<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1128" inparalogs="2351"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ajellomyces capsulata " NCBITaxId="447093">
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    </database>
    <notes>
      <additionalInformation abbreviation="A.capsulata" link="http://www.uniprot.org/taxonomy/447093"/>
    </notes>
  </species>
  <species name="Rhodotorula glutinis" NCBITaxId="1001064">
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        <gene id="1887" protId="G0T1M7" geneId="RTG_03043"/>
        <gene id="1889" protId="G0T069" geneId="RTG_02346"/>
        <gene id="1891" protId="G0SZP9" geneId="RTG_02218"/>
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        <gene id="1895" protId="G0T0N6" geneId="RTG_02628"/>
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        <gene id="1899" protId="G0SVD1" geneId="RTG_00435"/>
        <gene id="1901" protId="G0SWD3" geneId="RTG_00879"/>
        <gene id="1903" protId="G0SXV2" geneId="RTG_01368"/>
        <gene id="1905" protId="G0SZE1" geneId="RTG_02100"/>
        <gene id="1907" protId="G0SYS8" geneId="RTG_01893"/>
        <gene id="1909" protId="G0SVP1" geneId="RTG_00565"/>
        <gene id="1911" protId="G0SWV5" geneId="RTG_00778"/>
        <gene id="1913" protId="G0SVY1" geneId="RTG_00677"/>
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        <gene id="1917" protId="G0SZ42" geneId="RTG_01869"/>
        <gene id="1919" protId="G0SVC0" geneId="RTG_00424"/>
        <gene id="1921" protId="G0SW18" geneId="RTG_00740"/>
        <gene id="1923" protId="G0T0H9" geneId="RTG_02563"/>
        <gene id="1925" protId="G0T0P7" geneId="RTG_02639"/>
        <gene id="1927" protId="G0SVF8" geneId="RTG_00463"/>
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        <gene id="1933" protId="G0SWL1" geneId="RTG_00976"/>
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        <gene id="1937" protId="G0SWM1" geneId="RTG_00986"/>
        <gene id="1939" protId="G0SWW4" geneId="RTG_01072"/>
        <gene id="1941" protId="G0T1L0" geneId="RTG_03025"/>
        <gene id="1943" protId="G0T154" geneId="RTG_02844"/>
        <gene id="1945" protId="G0SX26" geneId="RTG_01151"/>
        <gene id="1947" protId="G0T119" geneId="RTG_02790"/>
        <gene id="1952" protId="G0SYJ2" geneId="RTG_01764"/>
        <gene id="1954" protId="G0T0S7" geneId="RTG_02676"/>
        <gene id="1956" protId="G0T0Z5" geneId="RTG_02766"/>
        <gene id="1958" protId="G0SYE7" geneId="RTG_01694"/>
        <gene id="1960" protId="G0T1E8" geneId="RTG_02958"/>
        <gene id="1962" protId="G0SYD7" geneId="RTG_01683"/>
        <gene id="1964" protId="G0SYZ5" geneId="RTG_01962"/>
        <gene id="1967" protId="G0SZ50" geneId="RTG_02005"/>
        <gene id="1969" protId="G0SWY7" geneId="RTG_01095"/>
        <gene id="1971" protId="G0SZV8" geneId="RTG_02481"/>
        <gene id="1974" protId="G0SVN7" geneId="RTG_00561"/>
        <gene id="1976" protId="G0SX13" geneId="RTG_01136"/>
        <gene id="1978" protId="G0SWL6" geneId="RTG_00981"/>
        <gene id="1980" protId="G0T1B7" geneId="RTG_02926"/>
        <gene id="1982" protId="G0T067" geneId="RTG_02344"/>
        <gene id="1984" protId="G0SYM8" geneId="RTG_01806"/>
        <gene id="1986" protId="G0SZD8" geneId="RTG_02097"/>
        <gene id="1988" protId="G0SY68" geneId="RTG_01613"/>
        <gene id="1990" protId="G0T277" geneId="RTG_03306"/>
        <gene id="1992" protId="G0SUJ0" geneId="RTG_00098"/>
        <gene id="1994" protId="G0SV77" geneId="RTG_00380"/>
        <gene id="1996" protId="G0SXP0" geneId="RTG_01539"/>
        <gene id="1998" protId="G0T0E5" geneId="RTG_02433"/>
        <gene id="2000" protId="G0T0N3" geneId="RTG_02625"/>
        <gene id="2002" protId="G0SXI2" geneId="RTG_01479"/>
        <gene id="2004" protId="G0SVC1" geneId="RTG_00425"/>
        <gene id="2006" protId="G0SVK4" geneId="RTG_00518"/>
        <gene id="2008" protId="G0SV53" geneId="RTG_00355"/>
        <gene id="2010" protId="G0SVL9" geneId="RTG_00543"/>
        <gene id="2012" protId="G0T0C8" geneId="RTG_02415"/>
        <gene id="2014" protId="G0SXK7" geneId="RTG_01504"/>
        <gene id="2016" protId="G0T2D2" geneId="RTG_03376"/>
        <gene id="2018" protId="G0T1X9" geneId="RTG_03162"/>
        <gene id="2023" protId="G0SVL6" geneId="RTG_00540"/>
        <gene id="2024" protId="G0T0A8" geneId="RTG_02395"/>
        <gene id="2028" protId="G0SYV1" geneId="RTG_01916"/>
        <gene id="2030" protId="G0SVE5" geneId="RTG_00449"/>
        <gene id="2032" protId="G0SUF5" geneId="RTG_00062"/>
        <gene id="2034" protId="G0SW91" geneId="RTG_00833"/>
        <gene id="2036" protId="G0SXI5" geneId="RTG_01482"/>
        <gene id="2038" protId="G0SUC2" geneId="RTG_00022"/>
        <gene id="2040" protId="G0T1C3" geneId="RTG_02932"/>
        <gene id="2042" protId="G0SYD0" geneId="RTG_01676"/>
        <gene id="2044" protId="G0SX32" geneId="RTG_01157"/>
        <gene id="2046" protId="G0SXM2" geneId="RTG_01519"/>
        <gene id="2048" protId="G0T158" geneId="RTG_02848"/>
        <gene id="2050" protId="G0T028" geneId="RTG_02300"/>
        <gene id="2052" protId="G0T0S3" geneId="RTG_02672"/>
        <gene id="2054" protId="G0T1J5" geneId="RTG_03009"/>
        <gene id="2056" protId="G0SXS1" geneId="RTG_01331"/>
        <gene id="2058" protId="G0T267" geneId="RTG_03295"/>
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        <gene id="2150" protId="G0T0A6" geneId="RTG_02393"/>
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        <gene id="2199" protId="G0T0G4" geneId="RTG_02548"/>
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        <gene id="2215" protId="G0T0Q3" geneId="RTG_02652"/>
        <gene id="2217" protId="G0SVE1" geneId="RTG_00445"/>
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        <gene id="2223" protId="G0T0C9" geneId="RTG_02416"/>
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        <gene id="2227" protId="G0SZG6" geneId="RTG_02125"/>
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        <gene id="2231" protId="G0SX20" geneId="RTG_01145"/>
        <gene id="2234" protId="G0SW87" geneId="RTG_00829"/>
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        <gene id="2238" protId="G0SXG4" geneId="RTG_01305"/>
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        <gene id="2246" protId="G0SXG9" geneId="RTG_01310"/>
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        <gene id="2249" protId="G0SWD2" geneId="RTG_00878"/>
        <gene id="2251" protId="G0SVS7" geneId="RTG_00620"/>
        <gene id="2253" protId="G0T2C4" geneId="RTG_03368"/>
        <gene id="2255" protId="G0SVD2" geneId="RTG_00436"/>
        <gene id="2257" protId="G0T121" geneId="RTG_02792"/>
        <gene id="2259" protId="G0T1I5" geneId="RTG_02995"/>
        <gene id="2261" protId="G0T148" geneId="RTG_02838"/>
        <gene id="2263" protId="G0SXI3" geneId="RTG_01480"/>
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        <gene id="2267" protId="G0SZ25" geneId="RTG_01844"/>
        <gene id="2269" protId="G0SXB1" geneId="RTG_01240"/>
        <gene id="2271" protId="G0T165" geneId="RTG_02863"/>
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        <gene id="2276" protId="G0SUW5" geneId="RTG_00245"/>
        <gene id="2278" protId="G0SV95" geneId="RTG_00398"/>
        <gene id="2280" protId="G0T0N2" geneId="RTG_02624"/>
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        <gene id="2284" protId="G0SV28" geneId="RTG_00318"/>
        <gene id="2286" protId="G0SZ01" geneId="RTG_01968"/>
        <gene id="2288" protId="G0SXC7" geneId="RTG_01260"/>
        <gene id="2290" protId="G0SUC0" geneId="RTG_00020"/>
        <gene id="2292" protId="G0T1R7" geneId="RTG_03084"/>
        <gene id="2294" protId="G0T0X9" geneId="RTG_02746"/>
        <gene id="2296" protId="G0SVR4" geneId="RTG_00607"/>
        <gene id="2298" protId="G0SWU6" geneId="RTG_00768"/>
        <gene id="2300" protId="G0SVA2" geneId="RTG_00405"/>
        <gene id="2302" protId="G0T1K5" geneId="RTG_03019"/>
        <gene id="2304" protId="G0T1F8" geneId="RTG_02968"/>
        <gene id="2306" protId="G0SUE3" geneId="RTG_00050"/>
        <gene id="2308" protId="G0SUE0" geneId="RTG_00047"/>
        <gene id="2310" protId="G0T125" geneId="RTG_02796"/>
        <gene id="2312" protId="G0T0A0" geneId="RTG_02387"/>
        <gene id="2314" protId="G0T270" geneId="RTG_03298"/>
        <gene id="2316" protId="G0SUP3" geneId="RTG_00159"/>
        <gene id="2319" protId="G0SXN1" geneId="RTG_01530"/>
        <gene id="2321" protId="G0SX62" geneId="RTG_01187"/>
        <gene id="2323" protId="G0T0E0" geneId="RTG_02428"/>
        <gene id="2325" protId="G0SUB0" geneId="RTG_00010"/>
        <gene id="2327" protId="G0SZJ6" geneId="RTG_02155"/>
        <gene id="2329" protId="G0SXR7" geneId="RTG_01580"/>
        <gene id="2331" protId="G0SVV7" geneId="RTG_00653"/>
        <gene id="2333" protId="G0SUI4" geneId="RTG_00091"/>
        <gene id="2335" protId="G0SZ31" geneId="RTG_01858"/>
        <gene id="2337" protId="G0T0R2" geneId="RTG_02661"/>
        <gene id="2339" protId="G0SVC9" geneId="RTG_00433"/>
        <gene id="2341" protId="G0SZZ8" geneId="RTG_02525"/>
        <gene id="2342" protId="G0SZZ6" geneId="RTG_02523"/>
        <gene id="2345" protId="G0SXT3" geneId="RTG_01346"/>
        <gene id="2347" protId="G0T1A6" geneId="RTG_02913"/>
        <gene id="2349" protId="G0SX78" geneId="RTG_01203"/>
        <gene id="2351" protId="G0SVT7" geneId="RTG_00630"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="R.glutinis" link="http://www.uniprot.org/taxonomy/1001064"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="2812"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2275"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="2018"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="1512"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1493"/>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="1446"/>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="1440"/>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="1409"/>
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        <score id="inparalog" value="1"/>
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      <geneRef id="18">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="1399"/>
      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="1383"/>
      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="22">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="12">
      <score id="bit" value="1369"/>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
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      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="13">
      <score id="bit" value="1344"/>
      <geneRef id="25">
        <score id="inparalog" value="1"/>
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      <geneRef id="26">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="14">
      <score id="bit" value="1333"/>
      <geneRef id="27">
        <score id="inparalog" value="1"/>
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      </geneRef>
      <geneRef id="28">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="15">
      <score id="bit" value="1302"/>
      <geneRef id="29">
        <score id="inparalog" value="1"/>
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      </geneRef>
      <geneRef id="30">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="16">
      <score id="bit" value="1282"/>
      <geneRef id="31">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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      <geneRef id="32">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="17">
      <score id="bit" value="1213"/>
      <geneRef id="33">
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      <geneRef id="34">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="18">
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      <geneRef id="35">
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      <geneRef id="36">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="19">
      <score id="bit" value="1196"/>
      <geneRef id="37">
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      <geneRef id="38">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="20">
      <score id="bit" value="1195"/>
      <geneRef id="39">
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      <geneRef id="40">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="21">
      <score id="bit" value="1169"/>
      <geneRef id="41">
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        <score id="bootstrap" value="1"/>
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      <geneRef id="42">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="22">
      <score id="bit" value="1166"/>
      <geneRef id="43">
        <score id="inparalog" value="1"/>
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      <geneRef id="44">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="23">
      <score id="bit" value="1157"/>
      <geneRef id="45">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="46">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="24">
      <score id="bit" value="1146"/>
      <geneRef id="47">
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      <geneRef id="48">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="25">
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      <geneRef id="49">
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        <score id="bootstrap" value="1"/>
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