<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="2110" inparalogs="5157"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Ajellomyces capsulata " NCBITaxId="447093">
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    <notes>
      <additionalInformation abbreviation="A.capsulata" link="http://www.uniprot.org/taxonomy/447093"/>
    </notes>
  </species>
  <species name="Drosophila virilis " NCBITaxId="7244">
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        <gene id="5143" protId="B4M2R7" geneId="DvirGJ18598"/>
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        <gene id="5147" protId="B4M3R1" geneId="DvirGJ18904"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="D.virilis" link="http://www.uniprot.org/taxonomy/7244"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <geneRef id="1">
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3597"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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