###################################
201 groups of orthologs
246 in-paralogs from Synechocystis.sp.
238 in-paralogs from T.annulata
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 864 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:864 T.annulata:864

P74361              	100.00%		Q4UAC3              	100.00%
P74459              	29.87%		
Bootstrap support for P74361 as seed ortholog is 100%.
Bootstrap support for Q4UAC3 as seed ortholog is 100%.

Group of orthologs #2. Best score 696 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:71 T.annulata:171

P22358              	100.00%		Q4UFA6              	100.00%
P73098              	13.41%		
Bootstrap support for P22358 as seed ortholog is 97%.
Bootstrap support for Q4UFA6 as seed ortholog is 99%.

Group of orthologs #3. Best score 659 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:659 T.annulata:659

Q55756              	100.00%		Q4UD12              	100.00%
Bootstrap support for Q55756 as seed ortholog is 100%.
Bootstrap support for Q4UD12 as seed ortholog is 100%.

Group of orthologs #4. Best score 650 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:650 T.annulata:650

Q55662              	100.00%		Q4U8P5              	100.00%
Bootstrap support for Q55662 as seed ortholog is 100%.
Bootstrap support for Q4U8P5 as seed ortholog is 100%.

Group of orthologs #5. Best score 626 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:333 T.annulata:120

P74228              	100.00%		Q4UGL7              	100.00%
P28371              	8.55%		
Bootstrap support for P74228 as seed ortholog is 100%.
Bootstrap support for Q4UGL7 as seed ortholog is 98%.

Group of orthologs #6. Best score 610 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:610 T.annulata:610

Q55404              	100.00%		Q4UA86              	100.00%
Bootstrap support for Q55404 as seed ortholog is 100%.
Bootstrap support for Q4UA86 as seed ortholog is 100%.

Group of orthologs #7. Best score 594 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:594 T.annulata:475

P26527              	100.00%		Q4UGW6              	100.00%
Bootstrap support for P26527 as seed ortholog is 100%.
Bootstrap support for Q4UGW6 as seed ortholog is 100%.

Group of orthologs #8. Best score 572 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:572 T.annulata:463

P27179              	100.00%		Q4UBG5              	100.00%
Bootstrap support for P27179 as seed ortholog is 100%.
Bootstrap support for Q4UBG5 as seed ortholog is 100%.

Group of orthologs #9. Best score 552 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:552 T.annulata:433

Q55522              	100.00%		Q4U8V3              	100.00%
Bootstrap support for Q55522 as seed ortholog is 100%.
Bootstrap support for Q4U8V3 as seed ortholog is 100%.

Group of orthologs #10. Best score 524 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:433 T.annulata:524

P74751              	100.00%		Q4UIN6              	100.00%
Bootstrap support for P74751 as seed ortholog is 100%.
Bootstrap support for Q4UIN6 as seed ortholog is 100%.

Group of orthologs #11. Best score 507 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:326 T.annulata:73

Q59999              	100.00%		Q4UEM8              	100.00%
P74062              	37.75%		
Bootstrap support for Q59999 as seed ortholog is 100%.
Bootstrap support for Q4UEM8 as seed ortholog is 84%.

Group of orthologs #12. Best score 464 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:464 T.annulata:303

P74227              	100.00%		Q4UB84              	100.00%
Bootstrap support for P74227 as seed ortholog is 100%.
Bootstrap support for Q4UB84 as seed ortholog is 100%.

Group of orthologs #13. Best score 448 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:448 T.annulata:38

Q05972              	100.00%		Q4UAL9              	100.00%
P22034              	36.25%		
Bootstrap support for Q05972 as seed ortholog is 100%.
Bootstrap support for Q4UAL9 as seed ortholog is 82%.

Group of orthologs #14. Best score 445 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:445 T.annulata:445

P74208              	100.00%		Q4UFH6              	100.00%
Bootstrap support for P74208 as seed ortholog is 100%.
Bootstrap support for Q4UFH6 as seed ortholog is 100%.

Group of orthologs #15. Best score 431 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:431 T.annulata:431

P74423              	100.00%		Q4UIJ4              	100.00%
Bootstrap support for P74423 as seed ortholog is 100%.
Bootstrap support for Q4UIJ4 as seed ortholog is 100%.

Group of orthologs #16. Best score 429 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:429 T.annulata:238

P52276              	100.00%		Q4UFA0              	100.00%
Bootstrap support for P52276 as seed ortholog is 100%.
Bootstrap support for Q4UFA0 as seed ortholog is 99%.

Group of orthologs #17. Best score 411 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:411 T.annulata:411

P77966              	100.00%		Q4UIX0              	100.00%
Bootstrap support for P77966 as seed ortholog is 100%.
Bootstrap support for Q4UIX0 as seed ortholog is 100%.

Group of orthologs #18. Best score 404 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:404 T.annulata:32

P73437              	100.00%		Q4UED3              	100.00%
P72991              	17.38%		
P73179              	14.08%		
Q55700              	14.08%		
Bootstrap support for P73437 as seed ortholog is 100%.
Bootstrap support for Q4UED3 as seed ortholog is 78%.

Group of orthologs #19. Best score 400 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:400 T.annulata:400

P77972              	100.00%		Q4U8Y7              	100.00%
Bootstrap support for P77972 as seed ortholog is 100%.
Bootstrap support for Q4U8Y7 as seed ortholog is 100%.

Group of orthologs #20. Best score 400 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:400 T.annulata:211

Q55486              	100.00%		Q4U9S4              	100.00%
Bootstrap support for Q55486 as seed ortholog is 100%.
Bootstrap support for Q4U9S4 as seed ortholog is 99%.

Group of orthologs #21. Best score 388 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:388 T.annulata:388

Q55694              	100.00%		Q4UAG1              	100.00%
Bootstrap support for Q55694 as seed ortholog is 100%.
Bootstrap support for Q4UAG1 as seed ortholog is 100%.

Group of orthologs #22. Best score 377 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:206 T.annulata:377

P73479              	100.00%		Q4UCK6              	100.00%
Bootstrap support for P73479 as seed ortholog is 99%.
Bootstrap support for Q4UCK6 as seed ortholog is 100%.

Group of orthologs #23. Best score 367 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:367 T.annulata:367

P74421              	100.00%		Q4UIF9              	100.00%
Bootstrap support for P74421 as seed ortholog is 100%.
Bootstrap support for Q4UIF9 as seed ortholog is 100%.

Group of orthologs #24. Best score 360 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:360 T.annulata:360

Q55806              	100.00%		Q4UIF0              	100.00%
Bootstrap support for Q55806 as seed ortholog is 100%.
Bootstrap support for Q4UIF0 as seed ortholog is 100%.

Group of orthologs #25. Best score 357 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:357 T.annulata:357

P77962              	100.00%		Q4UGW7              	100.00%
Bootstrap support for P77962 as seed ortholog is 100%.
Bootstrap support for Q4UGW7 as seed ortholog is 100%.

Group of orthologs #26. Best score 354 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:80 T.annulata:354

P49433              	100.00%		Q4U9T0              	100.00%
                    	       		Q4UFJ5              	28.09%
Bootstrap support for P49433 as seed ortholog is 98%.
Bootstrap support for Q4U9T0 as seed ortholog is 100%.

Group of orthologs #27. Best score 351 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:351 T.annulata:190

P72749              	100.00%		Q4UCF8              	100.00%
Bootstrap support for P72749 as seed ortholog is 100%.
Bootstrap support for Q4UCF8 as seed ortholog is 99%.

Group of orthologs #28. Best score 347 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:237 T.annulata:116

P73443              	100.00%		Q4UC52              	100.00%
Bootstrap support for P73443 as seed ortholog is 100%.
Bootstrap support for Q4UC52 as seed ortholog is 99%.

Group of orthologs #29. Best score 346 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:346 T.annulata:346

P49057              	100.00%		Q4UI52              	100.00%
Bootstrap support for P49057 as seed ortholog is 100%.
Bootstrap support for Q4UI52 as seed ortholog is 100%.

Group of orthologs #30. Best score 337 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:337 T.annulata:337

Q55738              	100.00%		Q4UFW1              	100.00%
P73077              	22.54%		
Bootstrap support for Q55738 as seed ortholog is 100%.
Bootstrap support for Q4UFW1 as seed ortholog is 100%.

Group of orthologs #31. Best score 337 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:337 T.annulata:337

P72871              	100.00%		Q4U8G4              	100.00%
Bootstrap support for P72871 as seed ortholog is 100%.
Bootstrap support for Q4U8G4 as seed ortholog is 100%.

Group of orthologs #32. Best score 326 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:326 T.annulata:326

P74686              	100.00%		Q4UEM0              	100.00%
                    	       		Q4U9U7              	8.83%
Bootstrap support for P74686 as seed ortholog is 100%.
Bootstrap support for Q4UEM0 as seed ortholog is 100%.

Group of orthologs #33. Best score 315 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:315 T.annulata:315

P73067              	100.00%		Q4UH63              	100.00%
Bootstrap support for P73067 as seed ortholog is 100%.
Bootstrap support for Q4UH63 as seed ortholog is 100%.

Group of orthologs #34. Best score 312 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:312 T.annulata:137

P73534              	100.00%		Q4U977              	100.00%
Q55863              	8.27%		
Bootstrap support for P73534 as seed ortholog is 100%.
Bootstrap support for Q4U977 as seed ortholog is 99%.

Group of orthologs #35. Best score 312 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:312 T.annulata:312

Q06473              	100.00%		Q4UJ69              	100.00%
Bootstrap support for Q06473 as seed ortholog is 100%.
Bootstrap support for Q4UJ69 as seed ortholog is 100%.

Group of orthologs #36. Best score 309 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:309 T.annulata:20

P73505              	100.00%		Q4UE11              	100.00%
Bootstrap support for P73505 as seed ortholog is 100%.
Bootstrap support for Q4UE11 as seed ortholog is 76%.

Group of orthologs #37. Best score 300 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:300 T.annulata:300

P73274              	100.00%		Q4UC26              	100.00%
Bootstrap support for P73274 as seed ortholog is 100%.
Bootstrap support for Q4UC26 as seed ortholog is 100%.

Group of orthologs #38. Best score 297 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:297 T.annulata:297

P73290              	100.00%		Q4UAQ0              	100.00%
Bootstrap support for P73290 as seed ortholog is 100%.
Bootstrap support for Q4UAQ0 as seed ortholog is 100%.

Group of orthologs #39. Best score 280 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:199 T.annulata:280

Q55793              	100.00%		Q4UIT8              	100.00%
Bootstrap support for Q55793 as seed ortholog is 100%.
Bootstrap support for Q4UIT8 as seed ortholog is 100%.

Group of orthologs #40. Best score 279 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:279 T.annulata:279

P74240              	100.00%		Q4UBQ2              	100.00%
Bootstrap support for P74240 as seed ortholog is 100%.
Bootstrap support for Q4UBQ2 as seed ortholog is 100%.

Group of orthologs #41. Best score 277 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:277 T.annulata:277

P52208              	100.00%		Q4UGE1              	100.00%
Bootstrap support for P52208 as seed ortholog is 100%.
Bootstrap support for Q4UGE1 as seed ortholog is 100%.

Group of orthologs #42. Best score 276 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:276 T.annulata:276

Q55663              	100.00%		Q4UDD7              	100.00%
Bootstrap support for Q55663 as seed ortholog is 100%.
Bootstrap support for Q4UDD7 as seed ortholog is 100%.

Group of orthologs #43. Best score 275 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:275 T.annulata:275

Q55983              	100.00%		Q4UIR6              	100.00%
Bootstrap support for Q55983 as seed ortholog is 100%.
Bootstrap support for Q4UIR6 as seed ortholog is 100%.

Group of orthologs #44. Best score 263 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:213 T.annulata:4

Q55804              	100.00%		Q4UHV5              	100.00%
                    	       		Q4UDI3              	39.58%
Bootstrap support for Q55804 as seed ortholog is 100%.
Bootstrap support for Q4UHV5 as seed ortholog is 62%.
Alternative seed ortholog is Q4UBV5 (4 bits away from this cluster)

Group of orthologs #45. Best score 262 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:262 T.annulata:262

P73971              	100.00%		Q4U9B7              	100.00%
Bootstrap support for P73971 as seed ortholog is 100%.
Bootstrap support for Q4U9B7 as seed ortholog is 100%.

Group of orthologs #46. Best score 248 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:248 T.annulata:248

P74260              	100.00%		Q4UF80              	100.00%
Bootstrap support for P74260 as seed ortholog is 100%.
Bootstrap support for Q4UF80 as seed ortholog is 100%.

Group of orthologs #47. Best score 245 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:245 T.annulata:30

P73340              	100.00%		Q4UDH7              	100.00%
Bootstrap support for P73340 as seed ortholog is 100%.
Bootstrap support for Q4UDH7 as seed ortholog is 63%.
Alternative seed ortholog is Q4U9Q4 (30 bits away from this cluster)

Group of orthologs #48. Best score 244 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:89 T.annulata:100

P73278              	100.00%		Q4UF89              	100.00%
P73239              	100.00%		Q4UEG2              	100.00%
P73533              	9.30%		
P73400              	7.09%		
Bootstrap support for P73278 as seed ortholog is 99%.
Bootstrap support for P73239 as seed ortholog is 99%.
Bootstrap support for Q4UF89 as seed ortholog is 99%.
Bootstrap support for Q4UEG2 as seed ortholog is 95%.

Group of orthologs #49. Best score 242 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:242 T.annulata:87

P72931              	100.00%		Q4UGN9              	100.00%
Bootstrap support for P72931 as seed ortholog is 100%.
Bootstrap support for Q4UGN9 as seed ortholog is 99%.

Group of orthologs #50. Best score 240 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:240 T.annulata:240

P77965              	100.00%		Q4UB41              	100.00%
                    	       		Q4U9X1              	15.42%
                    	       		Q4U9X6              	5.65%
Bootstrap support for P77965 as seed ortholog is 100%.
Bootstrap support for Q4UB41 as seed ortholog is 100%.

Group of orthologs #51. Best score 240 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:240 T.annulata:240

P72872              	100.00%		Q4UFZ2              	100.00%
Bootstrap support for P72872 as seed ortholog is 100%.
Bootstrap support for Q4UFZ2 as seed ortholog is 100%.

Group of orthologs #52. Best score 239 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:239 T.annulata:124

Q55505              	100.00%		Q4UDF9              	100.00%
Bootstrap support for Q55505 as seed ortholog is 100%.
Bootstrap support for Q4UDF9 as seed ortholog is 99%.

Group of orthologs #53. Best score 237 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:186 T.annulata:83

P73789              	100.00%		Q4UGI5              	100.00%
Bootstrap support for P73789 as seed ortholog is 100%.
Bootstrap support for Q4UGI5 as seed ortholog is 99%.

Group of orthologs #54. Best score 237 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:104 T.annulata:237

P74214              	100.00%		Q4UI41              	100.00%
Bootstrap support for P74214 as seed ortholog is 99%.
Bootstrap support for Q4UI41 as seed ortholog is 100%.

Group of orthologs #55. Best score 235 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:235 T.annulata:235

P74702              	100.00%		Q4UHU0              	100.00%
                    	       		Q4UDU8              	8.10%
                    	       		Q4U942              	5.70%
Bootstrap support for P74702 as seed ortholog is 100%.
Bootstrap support for Q4UHU0 as seed ortholog is 100%.

Group of orthologs #56. Best score 235 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:235 T.annulata:235

P73886              	100.00%		Q4UBH7              	100.00%
Bootstrap support for P73886 as seed ortholog is 100%.
Bootstrap support for Q4UBH7 as seed ortholog is 100%.

Group of orthologs #57. Best score 221 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:221 T.annulata:221

P74120              	100.00%		Q4UBS9              	100.00%
Bootstrap support for P74120 as seed ortholog is 100%.
Bootstrap support for Q4UBS9 as seed ortholog is 100%.

Group of orthologs #58. Best score 218 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:218 T.annulata:218

P72720              	100.00%		Q4UFR7              	100.00%
Bootstrap support for P72720 as seed ortholog is 100%.
Bootstrap support for Q4UFR7 as seed ortholog is 100%.

Group of orthologs #59. Best score 213 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:213 T.annulata:5

P73769              	100.00%		Q4UGD4              	100.00%
Bootstrap support for P73769 as seed ortholog is 100%.
Bootstrap support for Q4UGD4 as seed ortholog is 73%.
Alternative seed ortholog is Q4UH10 (5 bits away from this cluster)

Group of orthologs #60. Best score 211 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:211 T.annulata:211

Q55383              	100.00%		Q4UJ29              	100.00%
Bootstrap support for Q55383 as seed ortholog is 100%.
Bootstrap support for Q4UJ29 as seed ortholog is 100%.

Group of orthologs #61. Best score 209 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:209 T.annulata:209

P74008              	100.00%		Q4UCR8              	100.00%
Bootstrap support for P74008 as seed ortholog is 100%.
Bootstrap support for Q4UCR8 as seed ortholog is 100%.

Group of orthologs #62. Best score 199 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:199 T.annulata:112

P73317              	100.00%		Q4UCG9              	100.00%
Bootstrap support for P73317 as seed ortholog is 100%.
Bootstrap support for Q4UCG9 as seed ortholog is 99%.

Group of orthologs #63. Best score 194 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:194 T.annulata:194

Q55721              	100.00%		Q4UC91              	100.00%
                    	       		Q4UC92              	100.00%
Bootstrap support for Q55721 as seed ortholog is 100%.
Bootstrap support for Q4UC91 as seed ortholog is 100%.
Bootstrap support for Q4UC92 as seed ortholog is 100%.

Group of orthologs #64. Best score 192 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:95 T.annulata:32

Q55624              	100.00%		Q4UAP7              	100.00%
Bootstrap support for Q55624 as seed ortholog is 99%.
Bootstrap support for Q4UAP7 as seed ortholog is 89%.

Group of orthologs #65. Best score 191 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:191 T.annulata:191

P74257              	100.00%		Q4UB62              	100.00%
Bootstrap support for P74257 as seed ortholog is 100%.
Bootstrap support for Q4UB62 as seed ortholog is 100%.

Group of orthologs #66. Best score 188 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:135 T.annulata:9

P53579              	100.00%		Q4UAM2              	100.00%
P53580              	44.48%		
Bootstrap support for P53579 as seed ortholog is 99%.
Bootstrap support for Q4UAM2 as seed ortholog is 61%.
Alternative seed ortholog is Q4U8S5 (9 bits away from this cluster)

Group of orthologs #67. Best score 187 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:187 T.annulata:187

P73405              	100.00%		Q4UIE9              	100.00%
Bootstrap support for P73405 as seed ortholog is 100%.
Bootstrap support for Q4UIE9 as seed ortholog is 100%.

Group of orthologs #68. Best score 187 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:187 T.annulata:187

Q55729              	100.00%		Q4UJ57              	100.00%
Bootstrap support for Q55729 as seed ortholog is 100%.
Bootstrap support for Q4UJ57 as seed ortholog is 100%.

Group of orthologs #69. Best score 186 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:186 T.annulata:186

P72606              	100.00%		Q4UGB1              	100.00%
Bootstrap support for P72606 as seed ortholog is 100%.
Bootstrap support for Q4UGB1 as seed ortholog is 100%.

Group of orthologs #70. Best score 185 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:138 T.annulata:37

P72740              	100.00%		Q4UCK8              	100.00%
Bootstrap support for P72740 as seed ortholog is 99%.
Bootstrap support for Q4UCK8 as seed ortholog is 78%.

Group of orthologs #71. Best score 185 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:185 T.annulata:185

P74438              	100.00%		Q4U8H2              	100.00%
Bootstrap support for P74438 as seed ortholog is 100%.
Bootstrap support for Q4U8H2 as seed ortholog is 100%.

Group of orthologs #72. Best score 183 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:183 T.annulata:27

P72689              	100.00%		Q4UA29              	100.00%
Bootstrap support for P72689 as seed ortholog is 100%.
Bootstrap support for Q4UA29 as seed ortholog is 71%.
Alternative seed ortholog is Q4UDN0 (27 bits away from this cluster)

Group of orthologs #73. Best score 182 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:182 T.annulata:1

P73201              	100.00%		Q4UCK4              	100.00%
Bootstrap support for P73201 as seed ortholog is 100%.
Bootstrap support for Q4UCK4 as seed ortholog is 48%.
Alternative seed ortholog is Q4UGB4 (1 bits away from this cluster)

Group of orthologs #74. Best score 179 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:75 T.annulata:74

P74467              	100.00%		Q4UIN3              	100.00%
Bootstrap support for P74467 as seed ortholog is 99%.
Bootstrap support for Q4UIN3 as seed ortholog is 99%.

Group of orthologs #75. Best score 178 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:178 T.annulata:178

P74782              	100.00%		Q4UDM3              	100.00%
Bootstrap support for P74782 as seed ortholog is 100%.
Bootstrap support for Q4UDM3 as seed ortholog is 100%.

Group of orthologs #76. Best score 178 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:178 T.annulata:178

Q55848              	100.00%		Q4UII4              	100.00%
Bootstrap support for Q55848 as seed ortholog is 100%.
Bootstrap support for Q4UII4 as seed ortholog is 100%.

Group of orthologs #77. Best score 176 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:176 T.annulata:176

P74476              	100.00%		Q4UA63              	100.00%
Bootstrap support for P74476 as seed ortholog is 100%.
Bootstrap support for Q4UA63 as seed ortholog is 100%.

Group of orthologs #78. Best score 176 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:176 T.annulata:176

P73460              	100.00%		Q4UG70              	100.00%
Bootstrap support for P73460 as seed ortholog is 100%.
Bootstrap support for Q4UG70 as seed ortholog is 100%.

Group of orthologs #79. Best score 175 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:175 T.annulata:34

P77968              	100.00%		Q4UIZ9              	100.00%
Bootstrap support for P77968 as seed ortholog is 100%.
Bootstrap support for Q4UIZ9 as seed ortholog is 86%.

Group of orthologs #80. Best score 166 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:166 T.annulata:166

Q55880              	100.00%		Q4U8P8              	100.00%
Bootstrap support for Q55880 as seed ortholog is 100%.
Bootstrap support for Q4U8P8 as seed ortholog is 100%.

Group of orthologs #81. Best score 165 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:165 T.annulata:165

Q55778              	100.00%		Q4UHR6              	100.00%
Bootstrap support for Q55778 as seed ortholog is 100%.
Bootstrap support for Q4UHR6 as seed ortholog is 100%.

Group of orthologs #82. Best score 162 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:53 T.annulata:81

P54416              	100.00%		Q4UAC9              	100.00%
Q59993              	56.64%		
Bootstrap support for P54416 as seed ortholog is 93%.
Bootstrap support for Q4UAC9 as seed ortholog is 99%.

Group of orthologs #83. Best score 160 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:160 T.annulata:160

P73127              	100.00%		Q4U994              	100.00%
Q55803              	7.64%		
Bootstrap support for P73127 as seed ortholog is 100%.
Bootstrap support for Q4U994 as seed ortholog is 100%.

Group of orthologs #84. Best score 160 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:160 T.annulata:160

P73411              	100.00%		Q4UBM4              	100.00%
Bootstrap support for P73411 as seed ortholog is 100%.
Bootstrap support for Q4UBM4 as seed ortholog is 100%.

Group of orthologs #85. Best score 160 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:160 T.annulata:160

P74494              	100.00%		Q4UEC7              	100.00%
Bootstrap support for P74494 as seed ortholog is 100%.
Bootstrap support for Q4UEC7 as seed ortholog is 100%.

Group of orthologs #86. Best score 155 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:155 T.annulata:72

P73758              	100.00%		Q4UIF4              	100.00%
P74317              	16.82%		
Bootstrap support for P73758 as seed ortholog is 100%.
Bootstrap support for Q4UIF4 as seed ortholog is 88%.

Group of orthologs #87. Best score 154 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:154 T.annulata:154

P73004              	100.00%		Q4UG75              	100.00%
                    	       		Q4UH68              	31.43%
                    	       		Q4UDG8              	17.51%
Bootstrap support for P73004 as seed ortholog is 100%.
Bootstrap support for Q4UG75 as seed ortholog is 100%.

Group of orthologs #88. Best score 145 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:145 T.annulata:145

P73655              	100.00%		Q4U8R8              	100.00%
Bootstrap support for P73655 as seed ortholog is 100%.
Bootstrap support for Q4U8R8 as seed ortholog is 100%.

Group of orthologs #89. Best score 144 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:144 T.annulata:10

P53383              	100.00%		Q4UAV7              	100.00%
Bootstrap support for P53383 as seed ortholog is 100%.
Bootstrap support for Q4UAV7 as seed ortholog is 61%.
Alternative seed ortholog is Q4UC14 (10 bits away from this cluster)

Group of orthologs #90. Best score 144 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:47 T.annulata:144

P74163              	100.00%		Q4UH27              	100.00%
Bootstrap support for P74163 as seed ortholog is 89%.
Bootstrap support for Q4UH27 as seed ortholog is 100%.

Group of orthologs #91. Best score 143 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:143 T.annulata:143

P73558              	100.00%		Q4U8G3              	100.00%
Bootstrap support for P73558 as seed ortholog is 100%.
Bootstrap support for Q4U8G3 as seed ortholog is 100%.

Group of orthologs #92. Best score 143 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:143 T.annulata:143

P73723              	100.00%		Q4UGF6              	100.00%
Bootstrap support for P73723 as seed ortholog is 100%.
Bootstrap support for Q4UGF6 as seed ortholog is 100%.

Group of orthologs #93. Best score 141 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:141 T.annulata:44

Q59994              	100.00%		Q4U9J9              	100.00%
Bootstrap support for Q59994 as seed ortholog is 100%.
Bootstrap support for Q4U9J9 as seed ortholog is 91%.

Group of orthologs #94. Best score 140 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:140 T.annulata:140

P73474              	100.00%		Q4UER1              	100.00%
Q55814              	6.18%		
Bootstrap support for P73474 as seed ortholog is 100%.
Bootstrap support for Q4UER1 as seed ortholog is 100%.

Group of orthologs #95. Best score 139 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:139 T.annulata:139

P52983              	100.00%		Q4UC94              	100.00%
Bootstrap support for P52983 as seed ortholog is 100%.
Bootstrap support for Q4UC94 as seed ortholog is 100%.

Group of orthologs #96. Best score 139 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:29 T.annulata:60

P73302              	100.00%		Q4UHG4              	100.00%
Bootstrap support for P73302 as seed ortholog is 82%.
Bootstrap support for Q4UHG4 as seed ortholog is 97%.

Group of orthologs #97. Best score 136 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:136 T.annulata:14

P72943              	100.00%		Q4UER5              	100.00%
Bootstrap support for P72943 as seed ortholog is 100%.
Bootstrap support for Q4UER5 as seed ortholog is 64%.
Alternative seed ortholog is Q4UDQ5 (14 bits away from this cluster)

Group of orthologs #98. Best score 135 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:23 T.annulata:135

P74285              	100.00%		Q4UEZ4              	100.00%
Bootstrap support for P74285 as seed ortholog is 73%.
Alternative seed ortholog is Q55689 (23 bits away from this cluster)
Bootstrap support for Q4UEZ4 as seed ortholog is 100%.

Group of orthologs #99. Best score 132 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:64 T.annulata:132

P72933              	100.00%		Q4UGN4              	100.00%
Bootstrap support for P72933 as seed ortholog is 96%.
Bootstrap support for Q4UGN4 as seed ortholog is 100%.

Group of orthologs #100. Best score 131 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:131 T.annulata:131

P73839              	100.00%		Q4UAQ7              	100.00%
Bootstrap support for P73839 as seed ortholog is 100%.
Bootstrap support for Q4UAQ7 as seed ortholog is 100%.

Group of orthologs #101. Best score 131 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:131 T.annulata:131

P17253              	100.00%		Q4UGE9              	100.00%
Bootstrap support for P17253 as seed ortholog is 100%.
Bootstrap support for Q4UGE9 as seed ortholog is 100%.

Group of orthologs #102. Best score 130 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:130 T.annulata:130

P74215              	100.00%		Q4UFZ5              	100.00%
Bootstrap support for P74215 as seed ortholog is 100%.
Bootstrap support for Q4UFZ5 as seed ortholog is 100%.

Group of orthologs #103. Best score 129 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:129 T.annulata:129

P27320              	100.00%		Q4UAN6              	100.00%
Bootstrap support for P27320 as seed ortholog is 100%.
Bootstrap support for Q4UAN6 as seed ortholog is 100%.

Group of orthologs #104. Best score 127 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:127 T.annulata:127

P73349              	100.00%		Q4UBT8              	100.00%
Bootstrap support for P73349 as seed ortholog is 100%.
Bootstrap support for Q4UBT8 as seed ortholog is 100%.

Group of orthologs #105. Best score 127 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:127 T.annulata:127

Q59977              	100.00%		Q4UF22              	100.00%
Bootstrap support for Q59977 as seed ortholog is 100%.
Bootstrap support for Q4UF22 as seed ortholog is 100%.

Group of orthologs #106. Best score 121 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:74 T.annulata:121

Q55159              	100.00%		Q4UGA3              	100.00%
P73670              	15.83%		
Bootstrap support for Q55159 as seed ortholog is 98%.
Bootstrap support for Q4UGA3 as seed ortholog is 100%.

Group of orthologs #107. Best score 120 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:120 T.annulata:120

P74286              	100.00%		Q4U924              	100.00%
Bootstrap support for P74286 as seed ortholog is 100%.
Bootstrap support for Q4U924 as seed ortholog is 100%.

Group of orthologs #108. Best score 120 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:120 T.annulata:120

P72648              	100.00%		Q4UET2              	100.00%
Bootstrap support for P72648 as seed ortholog is 100%.
Bootstrap support for Q4UET2 as seed ortholog is 100%.

Group of orthologs #109. Best score 119 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:119 T.annulata:3

P50027              	100.00%		Q4UEY1              	100.00%
P73097              	17.71%		Q4UHP2              	7.83%
Bootstrap support for P50027 as seed ortholog is 100%.
Bootstrap support for Q4UEY1 as seed ortholog is 65%.
Alternative seed ortholog is Q4UFZ8 (3 bits away from this cluster)

Group of orthologs #110. Best score 118 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:118 T.annulata:118

P74040              	100.00%		Q4UH07              	100.00%
Bootstrap support for P74040 as seed ortholog is 100%.
Bootstrap support for Q4UH07 as seed ortholog is 100%.

Group of orthologs #111. Best score 117 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:61 T.annulata:53

P73853              	100.00%		Q4UCL4              	100.00%
Bootstrap support for P73853 as seed ortholog is 92%.
Bootstrap support for Q4UCL4 as seed ortholog is 90%.

Group of orthologs #112. Best score 117 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:117 T.annulata:117

Q55766              	100.00%		Q4UBE3              	100.00%
Bootstrap support for Q55766 as seed ortholog is 100%.
Bootstrap support for Q4UBE3 as seed ortholog is 100%.

Group of orthologs #113. Best score 116 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:116 T.annulata:116

Q55500              	100.00%		Q4UAZ7              	100.00%
Bootstrap support for Q55500 as seed ortholog is 100%.
Bootstrap support for Q4UAZ7 as seed ortholog is 100%.

Group of orthologs #114. Best score 114 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:114 T.annulata:114

P74756              	100.00%		Q4UBJ8              	100.00%
Q55822              	6.93%		
Bootstrap support for P74756 as seed ortholog is 100%.
Bootstrap support for Q4UBJ8 as seed ortholog is 100%.

Group of orthologs #115. Best score 114 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:114 T.annulata:114

P73426              	100.00%		Q4UC75              	100.00%
Bootstrap support for P73426 as seed ortholog is 100%.
Bootstrap support for Q4UC75 as seed ortholog is 100%.

Group of orthologs #116. Best score 113 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:113 T.annulata:113

Q55884              	100.00%		Q4UG25              	100.00%
P73627              	27.67%		
P73121              	17.51%		
Q55680              	15.09%		
P73577              	5.33%		
Bootstrap support for Q55884 as seed ortholog is 100%.
Bootstrap support for Q4UG25 as seed ortholog is 100%.

Group of orthologs #117. Best score 111 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:111 T.annulata:111

P72666              	100.00%		Q4U9I9              	100.00%
Bootstrap support for P72666 as seed ortholog is 100%.
Bootstrap support for Q4U9I9 as seed ortholog is 100%.

Group of orthologs #118. Best score 108 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:108 T.annulata:108

Q55132              	100.00%		Q4UG73              	100.00%
Bootstrap support for Q55132 as seed ortholog is 100%.
Bootstrap support for Q4UG73 as seed ortholog is 100%.

Group of orthologs #119. Best score 107 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:107 T.annulata:107

P73320              	100.00%		Q4U8W0              	100.00%
Bootstrap support for P73320 as seed ortholog is 100%.
Bootstrap support for Q4U8W0 as seed ortholog is 100%.

Group of orthologs #120. Best score 107 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:107 T.annulata:107

P74510              	100.00%		Q4UGK1              	100.00%
Bootstrap support for P74510 as seed ortholog is 100%.
Bootstrap support for Q4UGK1 as seed ortholog is 100%.

Group of orthologs #121. Best score 103 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:35 T.annulata:16

P74598              	100.00%		Q4UA19              	100.00%
Bootstrap support for P74598 as seed ortholog is 80%.
Bootstrap support for Q4UA19 as seed ortholog is 68%.
Alternative seed ortholog is Q4U918 (16 bits away from this cluster)

Group of orthologs #122. Best score 102 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:102 T.annulata:102

P15729              	100.00%		Q4UCZ9              	100.00%
                    	       		Q4UD00              	100.00%
                    	       		Q4UIR3              	60.77%
Bootstrap support for P15729 as seed ortholog is 100%.
Bootstrap support for Q4UCZ9 as seed ortholog is 100%.
Bootstrap support for Q4UD00 as seed ortholog is 100%.

Group of orthologs #123. Best score 99 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:99 T.annulata:17

Q55187              	100.00%		Q4U964              	100.00%
Bootstrap support for Q55187 as seed ortholog is 100%.
Bootstrap support for Q4U964 as seed ortholog is 63%.
Alternative seed ortholog is Q4UDM1 (17 bits away from this cluster)

Group of orthologs #124. Best score 99 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:99 T.annulata:99

Q55482              	100.00%		Q4UC21              	100.00%
Bootstrap support for Q55482 as seed ortholog is 100%.
Bootstrap support for Q4UC21 as seed ortholog is 100%.

Group of orthologs #125. Best score 99 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:99 T.annulata:99

P73942              	100.00%		Q4UGB9              	100.00%
Bootstrap support for P73942 as seed ortholog is 100%.
Bootstrap support for Q4UGB9 as seed ortholog is 100%.

Group of orthologs #126. Best score 98 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:98 T.annulata:98

P74430              	100.00%		Q4UC74              	100.00%
Bootstrap support for P74430 as seed ortholog is 100%.
Bootstrap support for Q4UC74 as seed ortholog is 100%.

Group of orthologs #127. Best score 98 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:98 T.annulata:98

Q57038              	100.00%		Q4UJ67              	100.00%
Bootstrap support for Q57038 as seed ortholog is 100%.
Bootstrap support for Q4UJ67 as seed ortholog is 100%.

Group of orthologs #128. Best score 97 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:97 T.annulata:97

P74696              	100.00%		Q4UEL2              	100.00%
Bootstrap support for P74696 as seed ortholog is 100%.
Bootstrap support for Q4UEL2 as seed ortholog is 100%.

Group of orthologs #129. Best score 94 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:94 T.annulata:94

P72754              	100.00%		Q4UC35              	100.00%
                    	       		Q4UGD7              	35.09%
Bootstrap support for P72754 as seed ortholog is 100%.
Bootstrap support for Q4UC35 as seed ortholog is 100%.

Group of orthologs #130. Best score 93 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:45 T.annulata:93

P74336              	100.00%		Q4UF94              	100.00%
Bootstrap support for P74336 as seed ortholog is 63%.
Alternative seed ortholog is P72930 (45 bits away from this cluster)
Bootstrap support for Q4UF94 as seed ortholog is 100%.

Group of orthologs #131. Best score 92 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:92 T.annulata:92

P74034              	100.00%		Q4UA14              	100.00%
Bootstrap support for P74034 as seed ortholog is 100%.
Bootstrap support for Q4UA14 as seed ortholog is 100%.

Group of orthologs #132. Best score 91 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:91 T.annulata:91

P73507              	100.00%		Q4UC08              	100.00%
                    	       		Q4U9T3              	22.36%
                    	       		Q4UIH2              	14.97%
Bootstrap support for P73507 as seed ortholog is 100%.
Bootstrap support for Q4UC08 as seed ortholog is 100%.

Group of orthologs #133. Best score 91 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:91 T.annulata:91

Q79EF2              	100.00%		Q4UA41              	100.00%
Bootstrap support for Q79EF2 as seed ortholog is 100%.
Bootstrap support for Q4UA41 as seed ortholog is 100%.

Group of orthologs #134. Best score 91 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:91 T.annulata:91

Q55909              	100.00%		Q4UIR1              	100.00%
Bootstrap support for Q55909 as seed ortholog is 100%.
Bootstrap support for Q4UIR1 as seed ortholog is 100%.

Group of orthologs #135. Best score 87 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:87 T.annulata:12

Q55653              	100.00%		Q4UG95              	100.00%
Bootstrap support for Q55653 as seed ortholog is 100%.
Bootstrap support for Q4UG95 as seed ortholog is 56%.
Alternative seed ortholog is Q4UED8 (12 bits away from this cluster)

Group of orthologs #136. Best score 86 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:86 T.annulata:86

Q55174              	100.00%		Q4UAQ2              	100.00%
Q55589              	32.78%		Q4UI30              	43.56%
                    	       		Q4UFM6              	33.29%
                    	       		Q4UGM6              	30.54%
                    	       		Q4UAE5              	27.06%
                    	       		Q4UHP7              	26.92%
Bootstrap support for Q55174 as seed ortholog is 100%.
Bootstrap support for Q4UAQ2 as seed ortholog is 100%.

Group of orthologs #137. Best score 85 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:85 T.annulata:85

P54735              	100.00%		Q4UIH6              	100.00%
P74745              	19.95%		Q4UIR7              	36.66%
                    	       		Q4UEA3              	22.00%
                    	       		Q4UF53              	13.60%
                    	       		Q4UAH4              	6.06%
Bootstrap support for P54735 as seed ortholog is 100%.
Bootstrap support for Q4UIH6 as seed ortholog is 100%.

Group of orthologs #138. Best score 85 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:85 T.annulata:85

Q55794              	100.00%		Q4UCT5              	100.00%
P72799              	8.65%		
Bootstrap support for Q55794 as seed ortholog is 100%.
Bootstrap support for Q4UCT5 as seed ortholog is 100%.

Group of orthologs #139. Best score 84 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:84 T.annulata:84

Q55724              	100.00%		Q4UGK9              	100.00%
Bootstrap support for Q55724 as seed ortholog is 100%.
Bootstrap support for Q4UGK9 as seed ortholog is 100%.

Group of orthologs #140. Best score 83 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:83 T.annulata:83

P72702              	100.00%		Q4UDA7              	100.00%
Bootstrap support for P72702 as seed ortholog is 100%.
Bootstrap support for Q4UDA7 as seed ortholog is 100%.

Group of orthologs #141. Best score 83 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:83 T.annulata:83

P36237              	100.00%		Q4UHX9              	100.00%
Bootstrap support for P36237 as seed ortholog is 100%.
Bootstrap support for Q4UHX9 as seed ortholog is 100%.

Group of orthologs #142. Best score 82 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:82 T.annulata:82

P72818              	100.00%		Q4U8P0              	100.00%
Bootstrap support for P72818 as seed ortholog is 100%.
Bootstrap support for Q4U8P0 as seed ortholog is 100%.

Group of orthologs #143. Best score 82 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:82 T.annulata:82

Q55643              	100.00%		Q4UBA7              	100.00%
Bootstrap support for Q55643 as seed ortholog is 100%.
Bootstrap support for Q4UBA7 as seed ortholog is 100%.

Group of orthologs #144. Best score 82 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:82 T.annulata:82

P36236              	100.00%		Q4UIW5              	100.00%
Bootstrap support for P36236 as seed ortholog is 100%.
Bootstrap support for Q4UIW5 as seed ortholog is 100%.

Group of orthologs #145. Best score 81 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:38 T.annulata:81

Q55362              	100.00%		Q4UBI5              	100.00%
Bootstrap support for Q55362 as seed ortholog is 81%.
Bootstrap support for Q4UBI5 as seed ortholog is 100%.

Group of orthologs #146. Best score 81 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:81 T.annulata:81

P72927              	100.00%		Q4UHL1              	100.00%
Bootstrap support for P72927 as seed ortholog is 100%.
Bootstrap support for Q4UHL1 as seed ortholog is 100%.

Group of orthologs #147. Best score 80 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:80 T.annulata:24

P73310              	100.00%		Q4UE25              	100.00%
Bootstrap support for P73310 as seed ortholog is 100%.
Bootstrap support for Q4UE25 as seed ortholog is 83%.

Group of orthologs #148. Best score 79 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:79 T.annulata:79

P52056              	100.00%		Q4UES3              	100.00%
Bootstrap support for P52056 as seed ortholog is 100%.
Bootstrap support for Q4UES3 as seed ortholog is 100%.

Group of orthologs #149. Best score 79 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:79 T.annulata:79

Q55526              	100.00%		Q4U8Q7              	100.00%
Bootstrap support for Q55526 as seed ortholog is 100%.
Bootstrap support for Q4U8Q7 as seed ortholog is 100%.

Group of orthologs #150. Best score 78 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:78 T.annulata:78

P23349              	100.00%		Q4UCB5              	100.00%
Bootstrap support for P23349 as seed ortholog is 100%.
Bootstrap support for Q4UCB5 as seed ortholog is 100%.

Group of orthologs #151. Best score 78 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:78 T.annulata:78

P73033              	100.00%		Q4UGP1              	100.00%
Bootstrap support for P73033 as seed ortholog is 100%.
Bootstrap support for Q4UGP1 as seed ortholog is 100%.

Group of orthologs #152. Best score 76 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:76 T.annulata:76

P74490              	100.00%		Q4U8X2              	100.00%
Bootstrap support for P74490 as seed ortholog is 100%.
Bootstrap support for Q4U8X2 as seed ortholog is 100%.

Group of orthologs #153. Best score 76 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:76 T.annulata:76

Q9FAB3              	100.00%		Q4UDJ9              	100.00%
Bootstrap support for Q9FAB3 as seed ortholog is 100%.
Bootstrap support for Q4UDJ9 as seed ortholog is 100%.

Group of orthologs #154. Best score 75 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:75 T.annulata:35

P73296              	100.00%		Q4UD42              	100.00%
Bootstrap support for P73296 as seed ortholog is 100%.
Bootstrap support for Q4UD42 as seed ortholog is 96%.

Group of orthologs #155. Best score 73 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:73 T.annulata:73

P74732              	100.00%		Q4UHR4              	100.00%
                    	       		Q4UJ43              	7.20%
Bootstrap support for P74732 as seed ortholog is 100%.
Bootstrap support for Q4UHR4 as seed ortholog is 100%.

Group of orthologs #156. Best score 71 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:71 T.annulata:71

P73298              	100.00%		Q4UA32              	100.00%
Bootstrap support for P73298 as seed ortholog is 100%.
Bootstrap support for Q4UA32 as seed ortholog is 100%.

Group of orthologs #157. Best score 71 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:71 T.annulata:71

P74614              	100.00%		Q4UBP2              	100.00%
Bootstrap support for P74614 as seed ortholog is 100%.
Bootstrap support for Q4UBP2 as seed ortholog is 100%.

Group of orthologs #158. Best score 69 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:69 T.annulata:69

P74267              	100.00%		Q4UCK7              	100.00%
Bootstrap support for P74267 as seed ortholog is 100%.
Bootstrap support for Q4UCK7 as seed ortholog is 100%.

Group of orthologs #159. Best score 68 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:68 T.annulata:68

P74590              	100.00%		Q4UB31              	100.00%
Bootstrap support for P74590 as seed ortholog is 100%.
Bootstrap support for Q4UB31 as seed ortholog is 100%.

Group of orthologs #160. Best score 67 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:67 T.annulata:67

Q55156              	100.00%		Q4U8N8              	100.00%
Bootstrap support for Q55156 as seed ortholog is 100%.
Bootstrap support for Q4U8N8 as seed ortholog is 100%.

Group of orthologs #161. Best score 66 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:66 T.annulata:66

P74346              	100.00%		Q4UIK0              	100.00%
P72970              	7.54%		
Bootstrap support for P74346 as seed ortholog is 100%.
Bootstrap support for Q4UIK0 as seed ortholog is 100%.

Group of orthologs #162. Best score 66 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:66 T.annulata:66

P74297              	100.00%		Q4U906              	100.00%
Bootstrap support for P74297 as seed ortholog is 100%.
Bootstrap support for Q4U906 as seed ortholog is 100%.

Group of orthologs #163. Best score 65 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:14 T.annulata:65

P73574              	100.00%		Q4U979              	100.00%
Q6ZEQ1              	27.16%		Q4U978              	52.26%
P73826              	23.70%		
P73991              	11.36%		
Q55596              	10.62%		
Q55922              	10.12%		
P73684              	8.15%		
Bootstrap support for P73574 as seed ortholog is 61%.
Alternative seed ortholog is Q59987 (14 bits away from this cluster)
Bootstrap support for Q4U979 as seed ortholog is 100%.

Group of orthologs #164. Best score 64 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:64 T.annulata:64

P72731              	100.00%		Q4U951              	100.00%
P74596              	6.63%		
Bootstrap support for P72731 as seed ortholog is 100%.
Bootstrap support for Q4U951 as seed ortholog is 100%.

Group of orthologs #165. Best score 64 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:64 T.annulata:64

P48957              	100.00%		Q4UE96              	100.00%
Bootstrap support for P48957 as seed ortholog is 100%.
Bootstrap support for Q4UE96 as seed ortholog is 100%.

Group of orthologs #166. Best score 62 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:62 T.annulata:62

P27180              	100.00%		Q4UIC1              	100.00%
Bootstrap support for P27180 as seed ortholog is 100%.
Bootstrap support for Q4UIC1 as seed ortholog is 100%.

Group of orthologs #167. Best score 61 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:61 T.annulata:61

P72655              	100.00%		Q4UCP4              	100.00%
Bootstrap support for P72655 as seed ortholog is 100%.
Bootstrap support for Q4UCP4 as seed ortholog is 100%.

Group of orthologs #168. Best score 59 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:59 T.annulata:59

P73369              	100.00%		Q4U8T4              	100.00%
Bootstrap support for P73369 as seed ortholog is 100%.
Bootstrap support for Q4U8T4 as seed ortholog is 100%.

Group of orthologs #169. Best score 58 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:58 T.annulata:58

P73304              	100.00%		Q4UFV1              	100.00%
Bootstrap support for P73304 as seed ortholog is 100%.
Bootstrap support for Q4UFV1 as seed ortholog is 100%.

Group of orthologs #170. Best score 57 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:57 T.annulata:57

P74035              	100.00%		Q4U8U9              	100.00%
Bootstrap support for P74035 as seed ortholog is 100%.
Bootstrap support for Q4U8U9 as seed ortholog is 100%.

Group of orthologs #171. Best score 57 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:57 T.annulata:57

P74071              	100.00%		Q4U8U5              	100.00%
Bootstrap support for P74071 as seed ortholog is 100%.
Bootstrap support for Q4U8U5 as seed ortholog is 100%.

Group of orthologs #172. Best score 56 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:56 T.annulata:56

P52231              	100.00%		Q4UDA2              	100.00%
P52232              	22.22%		
P73263              	20.99%		
P72643              	5.56%		
Bootstrap support for P52231 as seed ortholog is 100%.
Bootstrap support for Q4UDA2 as seed ortholog is 100%.

Group of orthologs #173. Best score 56 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:56 T.annulata:56

P73557              	100.00%		Q4UBC5              	100.00%
Q57014              	72.57%		
Q55765              	6.19%		
Bootstrap support for P73557 as seed ortholog is 100%.
Bootstrap support for Q4UBC5 as seed ortholog is 100%.

Group of orthologs #174. Best score 56 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:56 T.annulata:56

P74078              	100.00%		Q4UER3              	100.00%
P74409              	100.00%		
Bootstrap support for P74078 as seed ortholog is 100%.
Bootstrap support for P74409 as seed ortholog is 100%.
Bootstrap support for Q4UER3 as seed ortholog is 100%.

Group of orthologs #175. Best score 56 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:56 T.annulata:56

P74432              	100.00%		Q4UB88              	100.00%
Bootstrap support for P74432 as seed ortholog is 100%.
Bootstrap support for Q4UB88 as seed ortholog is 100%.

Group of orthologs #176. Best score 54 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:54 T.annulata:54

P73316              	100.00%		Q4UAN5              	100.00%
Bootstrap support for P73316 as seed ortholog is 100%.
Bootstrap support for Q4UAN5 as seed ortholog is 100%.

Group of orthologs #177. Best score 54 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:54 T.annulata:54

P73141              	100.00%		Q4UHU8              	100.00%
Bootstrap support for P73141 as seed ortholog is 100%.
Bootstrap support for Q4UHU8 as seed ortholog is 100%.

Group of orthologs #178. Best score 54 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:54 T.annulata:54

Q55593              	100.00%		Q4UE21              	100.00%
Bootstrap support for Q55593 as seed ortholog is 100%.
Bootstrap support for Q4UE21 as seed ortholog is 100%.

Group of orthologs #179. Best score 53 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:53 T.annulata:53

P73469              	100.00%		Q4UF82              	100.00%
                    	       		Q4UE84              	17.29%
Bootstrap support for P73469 as seed ortholog is 100%.
Bootstrap support for Q4UF82 as seed ortholog is 100%.

Group of orthologs #180. Best score 52 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:52 T.annulata:52

P73335              	100.00%		Q4UF43              	100.00%
Bootstrap support for P73335 as seed ortholog is 100%.
Bootstrap support for Q4UF43 as seed ortholog is 100%.

Group of orthologs #181. Best score 52 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:52 T.annulata:52

Q55574              	100.00%		Q4UG33              	100.00%
Bootstrap support for Q55574 as seed ortholog is 100%.
Bootstrap support for Q4UG33 as seed ortholog is 100%.

Group of orthologs #182. Best score 51 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:51 T.annulata:51

P73293              	100.00%		Q4UB17              	100.00%
Bootstrap support for P73293 as seed ortholog is 100%.
Bootstrap support for Q4UB17 as seed ortholog is 100%.

Group of orthologs #183. Best score 51 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:51 T.annulata:51

P74226              	100.00%		Q4UAD7              	100.00%
Bootstrap support for P74226 as seed ortholog is 100%.
Bootstrap support for Q4UAD7 as seed ortholog is 100%.

Group of orthologs #184. Best score 51 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:51 T.annulata:51

P74229              	100.00%		Q4UAU2              	100.00%
Bootstrap support for P74229 as seed ortholog is 100%.
Bootstrap support for Q4UAU2 as seed ortholog is 100%.

Group of orthologs #185. Best score 51 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:51 T.annulata:51

P73307              	100.00%		Q4UJ49              	100.00%
Bootstrap support for P73307 as seed ortholog is 100%.
Bootstrap support for Q4UJ49 as seed ortholog is 100%.

Group of orthologs #186. Best score 50 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:50 T.annulata:50

P20804              	100.00%		Q4UF65              	100.00%
Bootstrap support for P20804 as seed ortholog is 100%.
Bootstrap support for Q4UF65 as seed ortholog is 100%.

Group of orthologs #187. Best score 50 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:50 T.annulata:50

P80507              	100.00%		Q4UDC6              	100.00%
Bootstrap support for P80507 as seed ortholog is 100%.
Bootstrap support for Q4UDC6 as seed ortholog is 100%.

Group of orthologs #188. Best score 49 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:49 T.annulata:49

P73055              	100.00%		Q4UA34              	100.00%
Bootstrap support for P73055 as seed ortholog is 100%.
Bootstrap support for Q4UA34 as seed ortholog is 100%.

Group of orthologs #189. Best score 49 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:49 T.annulata:49

P48958              	100.00%		Q4UG26              	100.00%
Bootstrap support for P48958 as seed ortholog is 100%.
Bootstrap support for Q4UG26 as seed ortholog is 100%.

Group of orthologs #190. Best score 48 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:48 T.annulata:48

P73717              	100.00%		Q4UB02              	100.00%
Q55162              	7.22%		
Bootstrap support for P73717 as seed ortholog is 100%.
Bootstrap support for Q4UB02 as seed ortholog is 100%.

Group of orthologs #191. Best score 47 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:47 T.annulata:47

P74331              	100.00%		Q4U8Y4              	100.00%
Bootstrap support for P74331 as seed ortholog is 100%.
Bootstrap support for Q4U8Y4 as seed ortholog is 100%.

Group of orthologs #192. Best score 47 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:47 T.annulata:47

P74230              	100.00%		Q4UB42              	100.00%
Bootstrap support for P74230 as seed ortholog is 100%.
Bootstrap support for Q4UB42 as seed ortholog is 100%.

Group of orthologs #193. Best score 47 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:47 T.annulata:47

P73161              	100.00%		Q4UGV7              	100.00%
Bootstrap support for P73161 as seed ortholog is 100%.
Bootstrap support for Q4UGV7 as seed ortholog is 100%.

Group of orthologs #194. Best score 47 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:47 T.annulata:47

P73308              	100.00%		Q4UGT4              	100.00%
Bootstrap support for P73308 as seed ortholog is 100%.
Bootstrap support for Q4UGT4 as seed ortholog is 100%.

Group of orthologs #195. Best score 43 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:43 T.annulata:43

P74365              	100.00%		Q4UI51              	100.00%
                    	       		Q4UIS4              	25.12%
                    	       		Q4UIR9              	24.96%
                    	       		Q4UIS0              	24.64%
                    	       		Q4UIR8              	22.40%
                    	       		Q4UIS6              	22.08%
                    	       		Q4UIS1              	18.08%
                    	       		Q4UIS5              	14.72%
                    	       		Q4UFK1              	9.60%
Bootstrap support for P74365 as seed ortholog is 100%.
Bootstrap support for Q4UI51 as seed ortholog is 100%.

Group of orthologs #196. Best score 43 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:43 T.annulata:2

P73056              	100.00%		Q4UGQ5              	100.00%
Bootstrap support for P73056 as seed ortholog is 100%.
Bootstrap support for Q4UGQ5 as seed ortholog is 52%.
Alternative seed ortholog is Q4UIN8 (2 bits away from this cluster)

Group of orthologs #197. Best score 42 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:42 T.annulata:42

P74335              	100.00%		Q4UIG4              	100.00%
P73634              	15.48%		
Bootstrap support for P74335 as seed ortholog is 100%.
Bootstrap support for Q4UIG4 as seed ortholog is 100%.

Group of orthologs #198. Best score 42 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:42 T.annulata:42

P73295              	100.00%		Q4UA31              	100.00%
Bootstrap support for P73295 as seed ortholog is 100%.
Bootstrap support for Q4UA31 as seed ortholog is 100%.

Group of orthologs #199. Best score 42 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:42 T.annulata:42

P73311              	100.00%		Q4UDZ8              	100.00%
Bootstrap support for P73311 as seed ortholog is 100%.
Bootstrap support for Q4UDZ8 as seed ortholog is 100%.

Group of orthologs #200. Best score 40 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:40 T.annulata:40

P72683              	100.00%		Q4UAU6              	100.00%
P72580              	12.43%		
Bootstrap support for P72683 as seed ortholog is 100%.
Bootstrap support for Q4UAU6 as seed ortholog is 100%.

Group of orthologs #201. Best score 40 bits
Score difference with first non-orthologous sequence - Synechocystis.sp.:40 T.annulata:40

P73313              	100.00%		Q4UAN8              	100.00%
Bootstrap support for P73313 as seed ortholog is 100%.
Bootstrap support for Q4UAN8 as seed ortholog is 100%.