###################################
340 groups of orthologs
401 in-paralogs from P.kodakaraensis
435 in-paralogs from S.stipitis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 846 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:846 S.stipitis:105

Q5JE32              	100.00%		A3GFG5              	100.00%
Bootstrap support for Q5JE32 as seed ortholog is 100%.
Bootstrap support for A3GFG5 as seed ortholog is 93%.

Group of orthologs #2. Best score 629 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:629 S.stipitis:181

Q5JE33              	100.00%		A3GEY3              	100.00%
                    	       		A3GID7              	6.32%
Bootstrap support for Q5JE33 as seed ortholog is 100%.
Bootstrap support for A3GEY3 as seed ortholog is 99%.

Group of orthologs #3. Best score 618 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:618 S.stipitis:172

Q5JE98              	100.00%		A3LQG9              	100.00%
Q9V2X2              	53.07%		
Bootstrap support for Q5JE98 as seed ortholog is 100%.
Bootstrap support for A3LQG9 as seed ortholog is 97%.

Group of orthologs #4. Best score 575 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:430 S.stipitis:419

Q5JIR2              	100.00%		A3LY21              	100.00%
Bootstrap support for Q5JIR2 as seed ortholog is 100%.
Bootstrap support for A3LY21 as seed ortholog is 100%.

Group of orthologs #5. Best score 561 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:561 S.stipitis:232

Q5JJ31              	100.00%		A3LTD7              	100.00%
Bootstrap support for Q5JJ31 as seed ortholog is 100%.
Bootstrap support for A3LTD7 as seed ortholog is 99%.

Group of orthologs #6. Best score 519 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:519 S.stipitis:519

Q5JGF1              	100.00%		A3LVS2              	100.00%
Bootstrap support for Q5JGF1 as seed ortholog is 100%.
Bootstrap support for A3LVS2 as seed ortholog is 100%.

Group of orthologs #7. Best score 473 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:473 S.stipitis:220

Q5JFZ4              	100.00%		A3LQC6              	100.00%
Bootstrap support for Q5JFZ4 as seed ortholog is 100%.
Bootstrap support for A3LQC6 as seed ortholog is 100%.

Group of orthologs #8. Best score 455 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:359 S.stipitis:455

Q5JEV6              	100.00%		A3LQD6              	100.00%
Bootstrap support for Q5JEV6 as seed ortholog is 100%.
Bootstrap support for A3LQD6 as seed ortholog is 100%.

Group of orthologs #9. Best score 424 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:275 S.stipitis:424

Q9YGB0              	100.00%		A3GH63              	100.00%
Bootstrap support for Q9YGB0 as seed ortholog is 100%.
Bootstrap support for A3GH63 as seed ortholog is 100%.

Group of orthologs #10. Best score 415 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:415 S.stipitis:415

Q5JIP3              	100.00%		A3LPZ7              	100.00%
Bootstrap support for Q5JIP3 as seed ortholog is 100%.
Bootstrap support for A3LPZ7 as seed ortholog is 100%.

Group of orthologs #11. Best score 408 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:408 S.stipitis:270

Q8NKR7              	100.00%		A3LV95              	100.00%
Bootstrap support for Q8NKR7 as seed ortholog is 100%.
Bootstrap support for A3LV95 as seed ortholog is 99%.

Group of orthologs #12. Best score 397 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:397 S.stipitis:6

Q52500              	100.00%		A3LNN0              	100.00%
P61111              	71.99%		
Bootstrap support for Q52500 as seed ortholog is 100%.
Bootstrap support for A3LNN0 as seed ortholog is 56%.
Alternative seed ortholog is A3LYE9 (6 bits away from this cluster)

Group of orthologs #13. Best score 393 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:393 S.stipitis:43

Q5JDF4              	100.00%		A3LVL5              	100.00%
Bootstrap support for Q5JDF4 as seed ortholog is 100%.
Bootstrap support for A3LVL5 as seed ortholog is 61%.
Alternative seed ortholog is A3LRS8 (43 bits away from this cluster)

Group of orthologs #14. Best score 392 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:392 S.stipitis:177

Q5JFZ3              	100.00%		A3LNB1              	100.00%
Bootstrap support for Q5JFZ3 as seed ortholog is 100%.
Bootstrap support for A3LNB1 as seed ortholog is 99%.

Group of orthologs #15. Best score 383 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:383 S.stipitis:252

Q5JDZ7              	100.00%		A3LNS2              	100.00%
Bootstrap support for Q5JDZ7 as seed ortholog is 100%.
Bootstrap support for A3LNS2 as seed ortholog is 99%.

Group of orthologs #16. Best score 372 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:372 S.stipitis:372

Q5JID8              	100.00%		A3GFY3              	100.00%
Bootstrap support for Q5JID8 as seed ortholog is 100%.
Bootstrap support for A3GFY3 as seed ortholog is 100%.

Group of orthologs #17. Best score 369 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:369 S.stipitis:4

Q5JGE5              	100.00%		A3LPC5              	100.00%
Bootstrap support for Q5JGE5 as seed ortholog is 100%.
Bootstrap support for A3LPC5 as seed ortholog is 51%.
Alternative seed ortholog is A3GEZ1 (4 bits away from this cluster)

Group of orthologs #18. Best score 366 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:366 S.stipitis:24

Q5JJA2              	100.00%		A3LU44              	100.00%
Bootstrap support for Q5JJA2 as seed ortholog is 100%.
Bootstrap support for A3LU44 as seed ortholog is 63%.
Alternative seed ortholog is A3M0D4 (24 bits away from this cluster)

Group of orthologs #19. Best score 364 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:254 S.stipitis:8

Q5JHS5              	100.00%		A3LTW6              	100.00%
Bootstrap support for Q5JHS5 as seed ortholog is 100%.
Bootstrap support for A3LTW6 as seed ortholog is 56%.
Alternative seed ortholog is A3M0A5 (8 bits away from this cluster)

Group of orthologs #20. Best score 346 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:346 S.stipitis:346

Q5JJC8              	100.00%		A3LXN7              	100.00%
Bootstrap support for Q5JJC8 as seed ortholog is 100%.
Bootstrap support for A3LXN7 as seed ortholog is 100%.

Group of orthologs #21. Best score 345 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:345 S.stipitis:201

Q5JDL3              	100.00%		A3LVE2              	100.00%
Bootstrap support for Q5JDL3 as seed ortholog is 100%.
Bootstrap support for A3LVE2 as seed ortholog is 100%.

Group of orthologs #22. Best score 343 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:343 S.stipitis:33

Q5JIT1              	100.00%		A3GHX5              	100.00%
Bootstrap support for Q5JIT1 as seed ortholog is 100%.
Bootstrap support for A3GHX5 as seed ortholog is 75%.

Group of orthologs #23. Best score 338 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:264 S.stipitis:338

Q5JH71              	100.00%		A3LUH0              	100.00%
Bootstrap support for Q5JH71 as seed ortholog is 100%.
Bootstrap support for A3LUH0 as seed ortholog is 100%.

Group of orthologs #24. Best score 325 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:325 S.stipitis:242

O93623              	100.00%		A3M042              	100.00%
Bootstrap support for O93623 as seed ortholog is 100%.
Bootstrap support for A3M042 as seed ortholog is 100%.

Group of orthologs #25. Best score 319 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:319 S.stipitis:319

Q5JEP3              	100.00%		A3GHY8              	100.00%
Bootstrap support for Q5JEP3 as seed ortholog is 100%.
Bootstrap support for A3GHY8 as seed ortholog is 100%.

Group of orthologs #26. Best score 319 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:319 S.stipitis:153

Q5JGN7              	100.00%		A3LVX8              	100.00%
Bootstrap support for Q5JGN7 as seed ortholog is 100%.
Bootstrap support for A3LVX8 as seed ortholog is 98%.

Group of orthologs #27. Best score 318 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:318 S.stipitis:318

Q5JFR1              	100.00%		A3LRB4              	100.00%
Bootstrap support for Q5JFR1 as seed ortholog is 100%.
Bootstrap support for A3LRB4 as seed ortholog is 100%.

Group of orthologs #28. Best score 316 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:316 S.stipitis:316

Q5JED2              	100.00%		A3LNU0              	100.00%
Bootstrap support for Q5JED2 as seed ortholog is 100%.
Bootstrap support for A3LNU0 as seed ortholog is 100%.

Group of orthologs #29. Best score 315 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:315 S.stipitis:315

Q5JIF8              	100.00%		A3LYM8              	100.00%
Bootstrap support for Q5JIF8 as seed ortholog is 100%.
Bootstrap support for A3LYM8 as seed ortholog is 100%.

Group of orthologs #30. Best score 314 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:314 S.stipitis:314

Q5JFM1              	100.00%		A3LQ84              	100.00%
Bootstrap support for Q5JFM1 as seed ortholog is 100%.
Bootstrap support for A3LQ84 as seed ortholog is 100%.

Group of orthologs #31. Best score 307 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:307 S.stipitis:307

Q5JIQ2              	100.00%		A3LU95              	100.00%
Bootstrap support for Q5JIQ2 as seed ortholog is 100%.
Bootstrap support for A3LU95 as seed ortholog is 100%.

Group of orthologs #32. Best score 280 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:280 S.stipitis:188

Q5JEW3              	100.00%		A3LS68              	100.00%
Bootstrap support for Q5JEW3 as seed ortholog is 100%.
Bootstrap support for A3LS68 as seed ortholog is 99%.

Group of orthologs #33. Best score 280 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:280 S.stipitis:199

Q5JF49              	100.00%		A3LY68              	100.00%
Bootstrap support for Q5JF49 as seed ortholog is 100%.
Bootstrap support for A3LY68 as seed ortholog is 100%.

Group of orthologs #34. Best score 279 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:279 S.stipitis:52

Q5JE75              	100.00%		A3LUE7              	100.00%
Bootstrap support for Q5JE75 as seed ortholog is 100%.
Bootstrap support for A3LUE7 as seed ortholog is 86%.

Group of orthologs #35. Best score 274 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:274 S.stipitis:125

Q5JJH1              	100.00%		A3GEU5              	100.00%
Bootstrap support for Q5JJH1 as seed ortholog is 100%.
Bootstrap support for A3GEU5 as seed ortholog is 99%.

Group of orthologs #36. Best score 274 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:274 S.stipitis:114

Q52428              	100.00%		A3LQU4              	100.00%
Bootstrap support for Q52428 as seed ortholog is 100%.
Bootstrap support for A3LQU4 as seed ortholog is 99%.

Group of orthologs #37. Best score 274 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:274 S.stipitis:89

Q5JHC1              	100.00%		A3LY69              	100.00%
Bootstrap support for Q5JHC1 as seed ortholog is 100%.
Bootstrap support for A3LY69 as seed ortholog is 97%.

Group of orthologs #38. Best score 273 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:273 S.stipitis:273

Q5JFK3              	100.00%		A3LWR7              	100.00%
Bootstrap support for Q5JFK3 as seed ortholog is 100%.
Bootstrap support for A3LWR7 as seed ortholog is 100%.

Group of orthologs #39. Best score 272 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:272 S.stipitis:272

Q5JJE8              	100.00%		A3GFP7              	100.00%
Bootstrap support for Q5JJE8 as seed ortholog is 100%.
Bootstrap support for A3GFP7 as seed ortholog is 100%.

Group of orthologs #40. Best score 271 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:271 S.stipitis:271

Q5JFM0              	100.00%		A3LW02              	100.00%
Bootstrap support for Q5JFM0 as seed ortholog is 100%.
Bootstrap support for A3LW02 as seed ortholog is 100%.

Group of orthologs #41. Best score 265 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:265 S.stipitis:265

Q5JIA4              	100.00%		A3M0L4              	100.00%
Bootstrap support for Q5JIA4 as seed ortholog is 100%.
Bootstrap support for A3M0L4 as seed ortholog is 100%.

Group of orthologs #42. Best score 264 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:264 S.stipitis:264

Q76I93              	100.00%		A3LUJ3              	100.00%
Bootstrap support for Q76I93 as seed ortholog is 100%.
Bootstrap support for A3LUJ3 as seed ortholog is 100%.

Group of orthologs #43. Best score 261 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:261 S.stipitis:23

Q5JFZ6              	100.00%		A3GFI4              	100.00%
                    	       		A3GFV3              	43.16%
                    	       		A3LWX3              	9.18%
                    	       		A3GH91              	5.08%
Bootstrap support for Q5JFZ6 as seed ortholog is 100%.
Bootstrap support for A3GFI4 as seed ortholog is 77%.

Group of orthologs #44. Best score 259 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:259 S.stipitis:259

Q5JEY0              	100.00%		A3LUH7              	100.00%
Bootstrap support for Q5JEY0 as seed ortholog is 100%.
Bootstrap support for A3LUH7 as seed ortholog is 100%.

Group of orthologs #45. Best score 256 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:256 S.stipitis:256

Q9HHC4              	100.00%		A3LP53              	100.00%
Bootstrap support for Q9HHC4 as seed ortholog is 100%.
Bootstrap support for A3LP53 as seed ortholog is 100%.

Group of orthologs #46. Best score 255 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:255 S.stipitis:108

Q5JGN0              	100.00%		A3M056              	100.00%
Bootstrap support for Q5JGN0 as seed ortholog is 100%.
Bootstrap support for A3M056 as seed ortholog is 99%.

Group of orthologs #47. Best score 252 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:252 S.stipitis:252

Q5JH16              	100.00%		A3LWA5              	100.00%
Bootstrap support for Q5JH16 as seed ortholog is 100%.
Bootstrap support for A3LWA5 as seed ortholog is 100%.

Group of orthologs #48. Best score 251 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:251 S.stipitis:251

Q5JGK6              	100.00%		A3GG50              	100.00%
Bootstrap support for Q5JGK6 as seed ortholog is 100%.
Bootstrap support for A3GG50 as seed ortholog is 100%.

Group of orthologs #49. Best score 250 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:78 S.stipitis:250

Q5JHX4              	100.00%		A3GGL3              	100.00%
Bootstrap support for Q5JHX4 as seed ortholog is 97%.
Bootstrap support for A3GGL3 as seed ortholog is 100%.

Group of orthologs #50. Best score 249 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:249 S.stipitis:249

Q5JJ43              	100.00%		A3LNA5              	100.00%
                    	       		A3LP83              	50.71%
Bootstrap support for Q5JJ43 as seed ortholog is 100%.
Bootstrap support for A3LNA5 as seed ortholog is 100%.

Group of orthologs #51. Best score 247 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:247 S.stipitis:247

Q5JHC6              	100.00%		A3M082              	100.00%
Bootstrap support for Q5JHC6 as seed ortholog is 100%.
Bootstrap support for A3M082 as seed ortholog is 100%.

Group of orthologs #52. Best score 240 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:240

Q5JDF6              	100.00%		A3GHI9              	100.00%
Bootstrap support for Q5JDF6 as seed ortholog is 99%.
Bootstrap support for A3GHI9 as seed ortholog is 100%.

Group of orthologs #53. Best score 239 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:239 S.stipitis:239

Q5JFN4              	100.00%		A3LWX2              	100.00%
Bootstrap support for Q5JFN4 as seed ortholog is 100%.
Bootstrap support for A3LWX2 as seed ortholog is 100%.

Group of orthologs #54. Best score 237 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:237 S.stipitis:140

Q5JJ98              	100.00%		A3GH78              	100.00%
Bootstrap support for Q5JJ98 as seed ortholog is 100%.
Bootstrap support for A3GH78 as seed ortholog is 99%.

Group of orthologs #55. Best score 234 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:234 S.stipitis:234

Q5JE24              	100.00%		A3GHH1              	100.00%
Bootstrap support for Q5JE24 as seed ortholog is 100%.
Bootstrap support for A3GHH1 as seed ortholog is 100%.

Group of orthologs #56. Best score 230 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:149 S.stipitis:230

Q5JI16              	100.00%		A3LTD1              	100.00%
Bootstrap support for Q5JI16 as seed ortholog is 100%.
Bootstrap support for A3LTD1 as seed ortholog is 100%.

Group of orthologs #57. Best score 228 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:228 S.stipitis:228

Q5JFT4              	100.00%		A3LYZ8              	100.00%
Bootstrap support for Q5JFT4 as seed ortholog is 100%.
Bootstrap support for A3LYZ8 as seed ortholog is 100%.

Group of orthologs #58. Best score 226 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:226 S.stipitis:147

Q5JD45              	100.00%		A3GHT7              	100.00%
Bootstrap support for Q5JD45 as seed ortholog is 100%.
Bootstrap support for A3GHT7 as seed ortholog is 100%.

Group of orthologs #59. Best score 224 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:224 S.stipitis:224

Q5JIL7              	100.00%		A3LRI3              	100.00%
Bootstrap support for Q5JIL7 as seed ortholog is 100%.
Bootstrap support for A3LRI3 as seed ortholog is 100%.

Group of orthologs #60. Best score 223 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:47 S.stipitis:15

Q5JFW3              	100.00%		A3GF49              	100.00%
Bootstrap support for Q5JFW3 as seed ortholog is 86%.
Bootstrap support for A3GF49 as seed ortholog is 65%.
Alternative seed ortholog is A3LSS9 (15 bits away from this cluster)

Group of orthologs #61. Best score 220 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:220 S.stipitis:158

Q5JGQ7              	100.00%		A3LNR3              	100.00%
                    	       		A3LPM3              	26.38%
Bootstrap support for Q5JGQ7 as seed ortholog is 100%.
Bootstrap support for A3LNR3 as seed ortholog is 99%.

Group of orthologs #62. Best score 219 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:219 S.stipitis:145

Q5JD92              	100.00%		A3LPS0              	100.00%
Bootstrap support for Q5JD92 as seed ortholog is 100%.
Bootstrap support for A3LPS0 as seed ortholog is 99%.

Group of orthologs #63. Best score 219 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:219 S.stipitis:219

Q76KA7              	100.00%		A3LV88              	100.00%
Bootstrap support for Q76KA7 as seed ortholog is 100%.
Bootstrap support for A3LV88 as seed ortholog is 100%.

Group of orthologs #64. Best score 217 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:105 S.stipitis:35

Q5JDD8              	100.00%		A3LMT1              	100.00%
Bootstrap support for Q5JDD8 as seed ortholog is 99%.
Bootstrap support for A3LMT1 as seed ortholog is 84%.

Group of orthologs #65. Best score 216 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:216 S.stipitis:87

Q9YGB3              	100.00%		A3M0I8              	100.00%
Bootstrap support for Q9YGB3 as seed ortholog is 100%.
Bootstrap support for A3M0I8 as seed ortholog is 96%.

Group of orthologs #66. Best score 215 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:215 S.stipitis:215

P77933              	100.00%		A3LYU1              	100.00%
Bootstrap support for P77933 as seed ortholog is 100%.
Bootstrap support for A3LYU1 as seed ortholog is 100%.

Group of orthologs #67. Best score 215 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:215 S.stipitis:8

Q5JHP3              	100.00%		A3LWQ1              	100.00%
Bootstrap support for Q5JHP3 as seed ortholog is 100%.
Bootstrap support for A3LWQ1 as seed ortholog is 56%.
Alternative seed ortholog is A3LV77 (8 bits away from this cluster)

Group of orthologs #68. Best score 212 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:212 S.stipitis:145

Q76KA8              	100.00%		A3LRA4              	100.00%
Bootstrap support for Q76KA8 as seed ortholog is 100%.
Bootstrap support for A3LRA4 as seed ortholog is 99%.

Group of orthologs #69. Best score 211 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:211 S.stipitis:161

Q5JDJ0              	100.00%		A3LU50              	100.00%
Bootstrap support for Q5JDJ0 as seed ortholog is 100%.
Bootstrap support for A3LU50 as seed ortholog is 100%.

Group of orthologs #70. Best score 208 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:89 S.stipitis:62

Q5JGC4              	100.00%		A3LPQ2              	100.00%
Q5JEZ2              	10.55%		
Bootstrap support for Q5JGC4 as seed ortholog is 99%.
Bootstrap support for A3LPQ2 as seed ortholog is 96%.

Group of orthologs #71. Best score 207 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:207 S.stipitis:207

Q5JGF4              	100.00%		A3LPZ4              	100.00%
Bootstrap support for Q5JGF4 as seed ortholog is 100%.
Bootstrap support for A3LPZ4 as seed ortholog is 100%.

Group of orthologs #72. Best score 206 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:206

Q5JGG2              	100.00%		A3LY35              	100.00%
Bootstrap support for Q5JGG2 as seed ortholog is 92%.
Bootstrap support for A3LY35 as seed ortholog is 100%.

Group of orthologs #73. Best score 204 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:204 S.stipitis:138

Q5JFN0              	100.00%		A3LUT0              	100.00%
                    	       		A3GGX7              	21.24%
Bootstrap support for Q5JFN0 as seed ortholog is 100%.
Bootstrap support for A3LUT0 as seed ortholog is 99%.

Group of orthologs #74. Best score 204 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:204 S.stipitis:123

Q5JDH2              	100.00%		A3GFN6              	100.00%
Bootstrap support for Q5JDH2 as seed ortholog is 100%.
Bootstrap support for A3GFN6 as seed ortholog is 99%.

Group of orthologs #75. Best score 203 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:203 S.stipitis:154

Q5JFV5              	100.00%		A3GGR1              	100.00%
                    	       		A3LUA5              	71.39%
Bootstrap support for Q5JFV5 as seed ortholog is 100%.
Bootstrap support for A3GGR1 as seed ortholog is 99%.

Group of orthologs #76. Best score 201 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:201 S.stipitis:201

Q5JFN1              	100.00%		A3GEZ8              	100.00%
Bootstrap support for Q5JFN1 as seed ortholog is 100%.
Bootstrap support for A3GEZ8 as seed ortholog is 100%.

Group of orthologs #77. Best score 199 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:199 S.stipitis:22

Q5JG59              	100.00%		A3LRD1              	100.00%
                    	       		A3LPT8              	37.77%
                    	       		A3LNE3              	13.17%
                    	       		A3M013              	11.04%
Bootstrap support for Q5JG59 as seed ortholog is 100%.
Bootstrap support for A3LRD1 as seed ortholog is 71%.
Alternative seed ortholog is A3GF71 (22 bits away from this cluster)

Group of orthologs #78. Best score 199 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:199 S.stipitis:199

Q5JH37              	100.00%		A3LUL1              	100.00%
Bootstrap support for Q5JH37 as seed ortholog is 100%.
Bootstrap support for A3LUL1 as seed ortholog is 100%.

Group of orthologs #79. Best score 199 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:199 S.stipitis:199

Q5JIG7              	100.00%		A3LUY2              	100.00%
Bootstrap support for Q5JIG7 as seed ortholog is 100%.
Bootstrap support for A3LUY2 as seed ortholog is 100%.

Group of orthologs #80. Best score 198 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:198 S.stipitis:198

Q5JCY6              	100.00%		A3GFD5              	100.00%
Bootstrap support for Q5JCY6 as seed ortholog is 100%.
Bootstrap support for A3GFD5 as seed ortholog is 100%.

Group of orthologs #81. Best score 198 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:198 S.stipitis:198

Q5JFE7              	100.00%		A3LVJ1              	100.00%
Bootstrap support for Q5JFE7 as seed ortholog is 100%.
Bootstrap support for A3LVJ1 as seed ortholog is 100%.

Group of orthologs #82. Best score 197 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:197 S.stipitis:197

Q5JGH7              	100.00%		A3GFH1              	100.00%
Bootstrap support for Q5JGH7 as seed ortholog is 100%.
Bootstrap support for A3GFH1 as seed ortholog is 100%.

Group of orthologs #83. Best score 197 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:197 S.stipitis:197

Q5JIE6              	100.00%		A3LYS9              	100.00%
Bootstrap support for Q5JIE6 as seed ortholog is 100%.
Bootstrap support for A3LYS9 as seed ortholog is 100%.

Group of orthologs #84. Best score 193 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:193 S.stipitis:22

Q5JIU9              	100.00%		A3LPU5              	100.00%
Bootstrap support for Q5JIU9 as seed ortholog is 100%.
Bootstrap support for A3LPU5 as seed ortholog is 76%.

Group of orthologs #85. Best score 191 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:191 S.stipitis:74

Q5JH48              	100.00%		A3LSH7              	100.00%
                    	       		A3LMX1              	8.38%
Bootstrap support for Q5JH48 as seed ortholog is 100%.
Bootstrap support for A3LSH7 as seed ortholog is 96%.

Group of orthologs #86. Best score 191 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:191 S.stipitis:21

Q5JFV8              	100.00%		A3M0H4              	100.00%
Bootstrap support for Q5JFV8 as seed ortholog is 100%.
Bootstrap support for A3M0H4 as seed ortholog is 68%.
Alternative seed ortholog is A3LNB3 (21 bits away from this cluster)

Group of orthologs #87. Best score 190 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:190 S.stipitis:118

Q5JF38              	100.00%		A3LXY7              	100.00%
Bootstrap support for Q5JF38 as seed ortholog is 100%.
Bootstrap support for A3LXY7 as seed ortholog is 99%.

Group of orthologs #88. Best score 186 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:186 S.stipitis:186

Q5JH24              	100.00%		A3LW19              	100.00%
Bootstrap support for Q5JH24 as seed ortholog is 100%.
Bootstrap support for A3LW19 as seed ortholog is 100%.

Group of orthologs #89. Best score 185 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:185 S.stipitis:185

Q5JIM2              	100.00%		A3LQP9              	100.00%
Bootstrap support for Q5JIM2 as seed ortholog is 100%.
Bootstrap support for A3LQP9 as seed ortholog is 100%.

Group of orthologs #90. Best score 184 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:184 S.stipitis:184

Q5JF13              	100.00%		A3LWQ5              	100.00%
Bootstrap support for Q5JF13 as seed ortholog is 100%.
Bootstrap support for A3LWQ5 as seed ortholog is 100%.

Group of orthologs #91. Best score 182 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:182 S.stipitis:182

Q5JFV6              	100.00%		A3LS85              	100.00%
Bootstrap support for Q5JFV6 as seed ortholog is 100%.
Bootstrap support for A3LS85 as seed ortholog is 100%.

Group of orthologs #92. Best score 180 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:180 S.stipitis:180

Q5JDI0              	100.00%		A3GGS9              	100.00%
Bootstrap support for Q5JDI0 as seed ortholog is 100%.
Bootstrap support for A3GGS9 as seed ortholog is 100%.

Group of orthologs #93. Best score 180 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:63 S.stipitis:80

Q5JI97              	100.00%		A3GET1              	100.00%
Bootstrap support for Q5JI97 as seed ortholog is 92%.
Bootstrap support for A3GET1 as seed ortholog is 95%.

Group of orthologs #94. Best score 180 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:180 S.stipitis:115

Q5JF43              	100.00%		A3LN21              	100.00%
Bootstrap support for Q5JF43 as seed ortholog is 100%.
Bootstrap support for A3LN21 as seed ortholog is 99%.

Group of orthologs #95. Best score 178 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:178 S.stipitis:178

Q5JF06              	100.00%		A3LRJ3              	100.00%
                    	       		A3LY87              	52.04%
Bootstrap support for Q5JF06 as seed ortholog is 100%.
Bootstrap support for A3LRJ3 as seed ortholog is 100%.

Group of orthologs #96. Best score 178 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:178 S.stipitis:178

Q5JDG3              	100.00%		A3LT77              	100.00%
Bootstrap support for Q5JDG3 as seed ortholog is 100%.
Bootstrap support for A3LT77 as seed ortholog is 100%.

Group of orthologs #97. Best score 177 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:177 S.stipitis:177

Q5JJF3              	100.00%		A3LQJ1              	100.00%
Bootstrap support for Q5JJF3 as seed ortholog is 100%.
Bootstrap support for A3LQJ1 as seed ortholog is 100%.

Group of orthologs #98. Best score 176 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:176 S.stipitis:112

Q5JGS4              	100.00%		A3LTY5              	100.00%
Bootstrap support for Q5JGS4 as seed ortholog is 100%.
Bootstrap support for A3LTY5 as seed ortholog is 99%.

Group of orthologs #99. Best score 176 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:176 S.stipitis:176

Q5JFP1              	100.00%		A3LWV7              	100.00%
Bootstrap support for Q5JFP1 as seed ortholog is 100%.
Bootstrap support for A3LWV7 as seed ortholog is 100%.

Group of orthologs #100. Best score 175 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:175 S.stipitis:80

Q5JG47              	100.00%		A3LRA1              	100.00%
Bootstrap support for Q5JG47 as seed ortholog is 100%.
Bootstrap support for A3LRA1 as seed ortholog is 97%.

Group of orthologs #101. Best score 173 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:173 S.stipitis:48

Q5JEP5              	100.00%		A3GGU8              	100.00%
Bootstrap support for Q5JEP5 as seed ortholog is 100%.
Bootstrap support for A3GGU8 as seed ortholog is 94%.

Group of orthologs #102. Best score 171 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:171 S.stipitis:171

Q5JF74              	100.00%		A3LNS4              	100.00%
Bootstrap support for Q5JF74 as seed ortholog is 100%.
Bootstrap support for A3LNS4 as seed ortholog is 100%.

Group of orthologs #103. Best score 171 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:125 S.stipitis:171

Q5JIK4              	100.00%		A3LVL9              	100.00%
Bootstrap support for Q5JIK4 as seed ortholog is 99%.
Bootstrap support for A3LVL9 as seed ortholog is 100%.

Group of orthologs #104. Best score 170 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:170 S.stipitis:170

Q5JH43              	100.00%		A3M095              	100.00%
Bootstrap support for Q5JH43 as seed ortholog is 100%.
Bootstrap support for A3M095 as seed ortholog is 100%.

Group of orthologs #105. Best score 168 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:168 S.stipitis:121

Q5JDV8              	100.00%		A3GGB3              	100.00%
Q5JIM8              	9.94%		
Bootstrap support for Q5JDV8 as seed ortholog is 100%.
Bootstrap support for A3GGB3 as seed ortholog is 99%.

Group of orthologs #106. Best score 168 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:168 S.stipitis:168

Q5JEQ6              	100.00%		A3LNX3              	100.00%
Q5JJB8              	22.34%		
Bootstrap support for Q5JEQ6 as seed ortholog is 100%.
Bootstrap support for A3LNX3 as seed ortholog is 100%.

Group of orthologs #107. Best score 168 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:168 S.stipitis:168

Q5JFG9              	100.00%		A3LYB2              	100.00%
                    	       		A3GHW1              	24.33%
Bootstrap support for Q5JFG9 as seed ortholog is 100%.
Bootstrap support for A3LYB2 as seed ortholog is 100%.

Group of orthologs #108. Best score 166 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:166 S.stipitis:166

Q5JJG8              	100.00%		A3GFH5              	100.00%
Bootstrap support for Q5JJG8 as seed ortholog is 100%.
Bootstrap support for A3GFH5 as seed ortholog is 100%.

Group of orthologs #109. Best score 166 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:166 S.stipitis:166

Q5JIB3              	100.00%		A3LXR8              	100.00%
Bootstrap support for Q5JIB3 as seed ortholog is 100%.
Bootstrap support for A3LXR8 as seed ortholog is 100%.

Group of orthologs #110. Best score 164 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:164 S.stipitis:110

Q5JF76              	100.00%		A3LTG7              	100.00%
Bootstrap support for Q5JF76 as seed ortholog is 100%.
Bootstrap support for A3LTG7 as seed ortholog is 99%.

Group of orthologs #111. Best score 163 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:163 S.stipitis:163

O59650              	100.00%		A3LS93              	100.00%
Bootstrap support for O59650 as seed ortholog is 100%.
Bootstrap support for A3LS93 as seed ortholog is 100%.

Group of orthologs #112. Best score 162 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:162 S.stipitis:31

Q5JFX8              	100.00%		A3GF06              	100.00%
Bootstrap support for Q5JFX8 as seed ortholog is 100%.
Bootstrap support for A3GF06 as seed ortholog is 65%.
Alternative seed ortholog is A3LT52 (31 bits away from this cluster)

Group of orthologs #113. Best score 161 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:161 S.stipitis:161

Q5JE20              	100.00%		A3LQK6              	100.00%
Bootstrap support for Q5JE20 as seed ortholog is 100%.
Bootstrap support for A3LQK6 as seed ortholog is 100%.

Group of orthologs #114. Best score 160 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:160 S.stipitis:82

Q5JJ82              	100.00%		A3LPY6              	100.00%
Bootstrap support for Q5JJ82 as seed ortholog is 100%.
Bootstrap support for A3LPY6 as seed ortholog is 97%.

Group of orthologs #115. Best score 159 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:159 S.stipitis:159

Q5JFU8              	100.00%		A3LSB3              	100.00%
Bootstrap support for Q5JFU8 as seed ortholog is 100%.
Bootstrap support for A3LSB3 as seed ortholog is 100%.

Group of orthologs #116. Best score 156 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:156 S.stipitis:156

Q5JIH2              	100.00%		A3LTE1              	100.00%
Bootstrap support for Q5JIH2 as seed ortholog is 100%.
Bootstrap support for A3LTE1 as seed ortholog is 100%.

Group of orthologs #117. Best score 156 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:156 S.stipitis:27

Q5JH68              	100.00%		A3LV51              	100.00%
Bootstrap support for Q5JH68 as seed ortholog is 100%.
Bootstrap support for A3LV51 as seed ortholog is 84%.

Group of orthologs #118. Best score 155 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:155 S.stipitis:155

Q5JJG1              	100.00%		A3LVZ0              	100.00%
Bootstrap support for Q5JJG1 as seed ortholog is 100%.
Bootstrap support for A3LVZ0 as seed ortholog is 100%.

Group of orthologs #119. Best score 154 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:154 S.stipitis:55

Q5JF51              	100.00%		A3LUM6              	100.00%
Q5JHU0              	30.98%		
Bootstrap support for Q5JF51 as seed ortholog is 100%.
Bootstrap support for A3LUM6 as seed ortholog is 90%.

Group of orthologs #120. Best score 154 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:154 S.stipitis:70

Q5JGD1              	100.00%		A3LTA9              	100.00%
Bootstrap support for Q5JGD1 as seed ortholog is 100%.
Bootstrap support for A3LTA9 as seed ortholog is 97%.

Group of orthologs #121. Best score 152 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:152 S.stipitis:152

Q5JJG0              	100.00%		A3LZ47              	100.00%
                    	       		A3GFG0              	98.93%
Bootstrap support for Q5JJG0 as seed ortholog is 100%.
Bootstrap support for A3LZ47 as seed ortholog is 100%.

Group of orthologs #122. Best score 152 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:152 S.stipitis:152

Q5JJD2              	100.00%		A3LRZ0              	100.00%
Bootstrap support for Q5JJD2 as seed ortholog is 100%.
Bootstrap support for A3LRZ0 as seed ortholog is 100%.

Group of orthologs #123. Best score 151 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:151 S.stipitis:151

Q5JEZ9              	100.00%		A3LR17              	100.00%
Q5JH45              	5.44%		A3LRF7              	23.34%
                    	       		A3LRL2              	6.22%
Bootstrap support for Q5JEZ9 as seed ortholog is 100%.
Bootstrap support for A3LR17 as seed ortholog is 100%.

Group of orthologs #124. Best score 151 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:151 S.stipitis:151

Q5JDV1              	100.00%		A3LR66              	100.00%
Bootstrap support for Q5JDV1 as seed ortholog is 100%.
Bootstrap support for A3LR66 as seed ortholog is 100%.

Group of orthologs #125. Best score 151 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:151 S.stipitis:151

Q5JH96              	100.00%		A3LN13              	100.00%
Bootstrap support for Q5JH96 as seed ortholog is 100%.
Bootstrap support for A3LN13 as seed ortholog is 100%.

Group of orthologs #126. Best score 151 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:151 S.stipitis:151

Q5JE04              	100.00%		A3LVE9              	100.00%
Bootstrap support for Q5JE04 as seed ortholog is 100%.
Bootstrap support for A3LVE9 as seed ortholog is 100%.

Group of orthologs #127. Best score 148 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:148 S.stipitis:148

Q5JGE1              	100.00%		A3GHZ7              	100.00%
                    	       		A3LQN4              	11.94%
Bootstrap support for Q5JGE1 as seed ortholog is 100%.
Bootstrap support for A3GHZ7 as seed ortholog is 100%.

Group of orthologs #128. Best score 148 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:148 S.stipitis:148

Q5JH26              	100.00%		A3LP13              	100.00%
Bootstrap support for Q5JH26 as seed ortholog is 100%.
Bootstrap support for A3LP13 as seed ortholog is 100%.

Group of orthologs #129. Best score 147 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:147 S.stipitis:147

Q5JGJ4              	100.00%		A3LUZ2              	100.00%
Bootstrap support for Q5JGJ4 as seed ortholog is 100%.
Bootstrap support for A3LUZ2 as seed ortholog is 100%.

Group of orthologs #130. Best score 146 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:92 S.stipitis:146

Q5JHS7              	100.00%		A3LZ16              	100.00%
Bootstrap support for Q5JHS7 as seed ortholog is 99%.
Bootstrap support for A3LZ16 as seed ortholog is 100%.

Group of orthologs #131. Best score 145 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:145 S.stipitis:63

Q5JF30              	100.00%		A3LR26              	100.00%
                    	       		A3LY33              	35.60%
Bootstrap support for Q5JF30 as seed ortholog is 100%.
Bootstrap support for A3LR26 as seed ortholog is 98%.

Group of orthologs #132. Best score 144 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:144 S.stipitis:28

Q5JFM8              	100.00%		A3GF91              	100.00%
                    	       		A3GGR2              	43.81%
                    	       		A3LMX7              	8.60%
Bootstrap support for Q5JFM8 as seed ortholog is 100%.
Bootstrap support for A3GF91 as seed ortholog is 75%.

Group of orthologs #133. Best score 144 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:144 S.stipitis:144

Q5JI54              	100.00%		A3GI57              	100.00%
Bootstrap support for Q5JI54 as seed ortholog is 100%.
Bootstrap support for A3GI57 as seed ortholog is 100%.

Group of orthologs #134. Best score 143 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:143 S.stipitis:68

Q5JE21              	100.00%		A3LPT6              	100.00%
Bootstrap support for Q5JE21 as seed ortholog is 100%.
Bootstrap support for A3LPT6 as seed ortholog is 92%.

Group of orthologs #135. Best score 142 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:142 S.stipitis:97

Q5JF63              	100.00%		A3GGK9              	100.00%
Bootstrap support for Q5JF63 as seed ortholog is 100%.
Bootstrap support for A3GGK9 as seed ortholog is 98%.

Group of orthologs #136. Best score 142 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:142 S.stipitis:142

Q5JD25              	100.00%		A3LZT6              	100.00%
Bootstrap support for Q5JD25 as seed ortholog is 100%.
Bootstrap support for A3LZT6 as seed ortholog is 100%.

Group of orthologs #137. Best score 141 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:141 S.stipitis:141

Q5JFR0              	100.00%		A3LWW1              	100.00%
Bootstrap support for Q5JFR0 as seed ortholog is 100%.
Bootstrap support for A3LWW1 as seed ortholog is 100%.

Group of orthologs #138. Best score 140 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:140 S.stipitis:28

Q5JEM6              	100.00%		A3LRJ9              	100.00%
Bootstrap support for Q5JEM6 as seed ortholog is 100%.
Bootstrap support for A3LRJ9 as seed ortholog is 80%.

Group of orthologs #139. Best score 139 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:139 S.stipitis:139

Q5JGG5              	100.00%		A3GF19              	100.00%
Bootstrap support for Q5JGG5 as seed ortholog is 100%.
Bootstrap support for A3GF19 as seed ortholog is 100%.

Group of orthologs #140. Best score 139 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:139 S.stipitis:139

Q5JDI4              	100.00%		A3LRL1              	100.00%
Bootstrap support for Q5JDI4 as seed ortholog is 100%.
Bootstrap support for A3LRL1 as seed ortholog is 100%.

Group of orthologs #141. Best score 137 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:137 S.stipitis:90

Q5JH36              	100.00%		A3LWF9              	100.00%
Bootstrap support for Q5JH36 as seed ortholog is 100%.
Bootstrap support for A3LWF9 as seed ortholog is 99%.

Group of orthologs #142. Best score 136 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:136 S.stipitis:136

Q5JGR7              	100.00%		A3LVN3              	100.00%
Bootstrap support for Q5JGR7 as seed ortholog is 100%.
Bootstrap support for A3LVN3 as seed ortholog is 100%.

Group of orthologs #143. Best score 135 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:135 S.stipitis:135

Q5JJG3              	100.00%		A3LQJ0              	100.00%
Bootstrap support for Q5JJG3 as seed ortholog is 100%.
Bootstrap support for A3LQJ0 as seed ortholog is 100%.

Group of orthologs #144. Best score 135 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:135 S.stipitis:74

Q5JCX7              	100.00%		A3LYB1              	100.00%
Bootstrap support for Q5JCX7 as seed ortholog is 100%.
Bootstrap support for A3LYB1 as seed ortholog is 98%.

Group of orthologs #145. Best score 135 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:135 S.stipitis:27

Q5JI69              	100.00%		P22144              	100.00%
Bootstrap support for Q5JI69 as seed ortholog is 100%.
Bootstrap support for P22144 as seed ortholog is 73%.
Alternative seed ortholog is A3LUQ0 (27 bits away from this cluster)

Group of orthologs #146. Best score 133 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:133 S.stipitis:133

Q5JJ50              	100.00%		A3LRG1              	100.00%
Bootstrap support for Q5JJ50 as seed ortholog is 100%.
Bootstrap support for A3LRG1 as seed ortholog is 100%.

Group of orthologs #147. Best score 133 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:133 S.stipitis:133

Q5JJG4              	100.00%		A3LZW4              	100.00%
Bootstrap support for Q5JJG4 as seed ortholog is 100%.
Bootstrap support for A3LZW4 as seed ortholog is 100%.

Group of orthologs #148. Best score 131 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:131 S.stipitis:131

Q5JDH5              	100.00%		A3LP59              	100.00%
Bootstrap support for Q5JDH5 as seed ortholog is 100%.
Bootstrap support for A3LP59 as seed ortholog is 100%.

Group of orthologs #149. Best score 130 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:130 S.stipitis:130

Q5JJG6              	100.00%		A3GHI8              	100.00%
Bootstrap support for Q5JJG6 as seed ortholog is 100%.
Bootstrap support for A3GHI8 as seed ortholog is 100%.

Group of orthologs #150. Best score 130 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:130 S.stipitis:130

Q5JDE9              	100.00%		A3LTC2              	100.00%
Bootstrap support for Q5JDE9 as seed ortholog is 100%.
Bootstrap support for A3LTC2 as seed ortholog is 100%.

Group of orthologs #151. Best score 130 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:130 S.stipitis:6

Q5JHN1              	100.00%		A3LQV2              	100.00%
Bootstrap support for Q5JHN1 as seed ortholog is 100%.
Bootstrap support for A3LQV2 as seed ortholog is 93%.

Group of orthologs #152. Best score 128 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:22 S.stipitis:128

Q5JES4              	100.00%		A3LQH4              	100.00%
Bootstrap support for Q5JES4 as seed ortholog is 72%.
Alternative seed ortholog is Q5JJ47 (22 bits away from this cluster)
Bootstrap support for A3LQH4 as seed ortholog is 100%.

Group of orthologs #153. Best score 127 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:127 S.stipitis:127

Q52366              	100.00%		A3GFP3              	100.00%
Bootstrap support for Q52366 as seed ortholog is 100%.
Bootstrap support for A3GFP3 as seed ortholog is 100%.

Group of orthologs #154. Best score 126 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:126 S.stipitis:126

Q5JE68              	100.00%		A3GFI1              	100.00%
Q5JHF7              	100.00%		A3M0D5              	100.00%
Bootstrap support for Q5JE68 as seed ortholog is 100%.
Bootstrap support for Q5JHF7 as seed ortholog is 100%.
Bootstrap support for A3GFI1 as seed ortholog is 100%.
Bootstrap support for A3M0D5 as seed ortholog is 100%.

Group of orthologs #155. Best score 126 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:126 S.stipitis:126

Q5JGT4              	100.00%		A3LYX3              	100.00%
Bootstrap support for Q5JGT4 as seed ortholog is 100%.
Bootstrap support for A3LYX3 as seed ortholog is 100%.

Group of orthologs #156. Best score 125 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:125 S.stipitis:125

Q5JIB9              	100.00%		A3LQV5              	100.00%
Bootstrap support for Q5JIB9 as seed ortholog is 100%.
Bootstrap support for A3LQV5 as seed ortholog is 100%.

Group of orthologs #157. Best score 124 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:124 S.stipitis:124

Q5JFU6              	100.00%		A3LSV4              	100.00%
Bootstrap support for Q5JFU6 as seed ortholog is 100%.
Bootstrap support for A3LSV4 as seed ortholog is 100%.

Group of orthologs #158. Best score 124 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:124 S.stipitis:124

Q5JJC6              	100.00%		A3LQ81              	100.00%
Bootstrap support for Q5JJC6 as seed ortholog is 100%.
Bootstrap support for A3LQ81 as seed ortholog is 100%.

Group of orthologs #159. Best score 123 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:123

Q5JGN1              	100.00%		A3LYP5              	100.00%
P58109              	62.20%		
Bootstrap support for Q5JGN1 as seed ortholog is 100%.
Bootstrap support for A3LYP5 as seed ortholog is 100%.

Group of orthologs #160. Best score 123 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:123

Q5JEK8              	100.00%		A3LR62              	100.00%
Bootstrap support for Q5JEK8 as seed ortholog is 100%.
Bootstrap support for A3LR62 as seed ortholog is 100%.

Group of orthologs #161. Best score 123 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:123

Q5JFR2              	100.00%		A3LRB3              	100.00%
Bootstrap support for Q5JFR2 as seed ortholog is 100%.
Bootstrap support for A3LRB3 as seed ortholog is 100%.

Group of orthologs #162. Best score 123 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:64

Q5JJ91              	100.00%		A3LNF2              	100.00%
Bootstrap support for Q5JJ91 as seed ortholog is 100%.
Bootstrap support for A3LNF2 as seed ortholog is 92%.

Group of orthologs #163. Best score 123 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:123

Q5JIA2              	100.00%		A3LTZ7              	100.00%
Bootstrap support for Q5JIA2 as seed ortholog is 100%.
Bootstrap support for A3LTZ7 as seed ortholog is 100%.

Group of orthologs #164. Best score 123 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:123 S.stipitis:54

Q5JJF8              	100.00%		A3LT69              	100.00%
Bootstrap support for Q5JJF8 as seed ortholog is 100%.
Bootstrap support for A3LT69 as seed ortholog is 99%.

Group of orthologs #165. Best score 121 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:121 S.stipitis:72

Q5JJF1              	100.00%		A3LWF6              	100.00%
Bootstrap support for Q5JJF1 as seed ortholog is 100%.
Bootstrap support for A3LWF6 as seed ortholog is 99%.

Group of orthologs #166. Best score 119 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:119 S.stipitis:60

Q5JFS0              	100.00%		A3LWL7              	100.00%
                    	       		A3LPU2              	13.19%
Bootstrap support for Q5JFS0 as seed ortholog is 100%.
Bootstrap support for A3LWL7 as seed ortholog is 91%.

Group of orthologs #167. Best score 119 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:119 S.stipitis:119

Q5JGZ7              	100.00%		A3LNM6              	100.00%
Bootstrap support for Q5JGZ7 as seed ortholog is 100%.
Bootstrap support for A3LNM6 as seed ortholog is 100%.

Group of orthologs #168. Best score 119 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:119 S.stipitis:119

Q5JDB6              	100.00%		A3LW69              	100.00%
Bootstrap support for Q5JDB6 as seed ortholog is 100%.
Bootstrap support for A3LW69 as seed ortholog is 100%.

Group of orthologs #169. Best score 118 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:39 S.stipitis:118

Q5JGT2              	100.00%		A3M0A1              	100.00%
Q5JI45              	39.21%		
Bootstrap support for Q5JGT2 as seed ortholog is 83%.
Bootstrap support for A3M0A1 as seed ortholog is 100%.

Group of orthologs #170. Best score 118 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:118 S.stipitis:118

Q5JHV7              	100.00%		A3LV39              	100.00%
Bootstrap support for Q5JHV7 as seed ortholog is 100%.
Bootstrap support for A3LV39 as seed ortholog is 100%.

Group of orthologs #171. Best score 118 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:118 S.stipitis:118

Q5JIF4              	100.00%		A3LX15              	100.00%
Bootstrap support for Q5JIF4 as seed ortholog is 100%.
Bootstrap support for A3LX15 as seed ortholog is 100%.

Group of orthologs #172. Best score 118 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:30 S.stipitis:23

Q5JIX4              	100.00%		A3LZU7              	100.00%
Bootstrap support for Q5JIX4 as seed ortholog is 80%.
Bootstrap support for A3LZU7 as seed ortholog is 40%.
Alternative seed ortholog is A3GF05 (23 bits away from this cluster)

Group of orthologs #173. Best score 117 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:117 S.stipitis:16

Q5JF69              	100.00%		A3LQ34              	100.00%
Bootstrap support for Q5JF69 as seed ortholog is 100%.
Bootstrap support for A3LQ34 as seed ortholog is 83%.

Group of orthologs #174. Best score 117 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:117 S.stipitis:117

Q5JIQ1              	100.00%		A3LMX0              	100.00%
Bootstrap support for Q5JIQ1 as seed ortholog is 100%.
Bootstrap support for A3LMX0 as seed ortholog is 100%.

Group of orthologs #175. Best score 117 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:117 S.stipitis:117

Q5JJE2              	100.00%		A3LX39              	100.00%
Bootstrap support for Q5JJE2 as seed ortholog is 100%.
Bootstrap support for A3LX39 as seed ortholog is 100%.

Group of orthologs #176. Best score 116 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:2 S.stipitis:116

Q5JGG0              	100.00%		A3GHN5              	100.00%
Bootstrap support for Q5JGG0 as seed ortholog is 45%.
Alternative seed ortholog is Q5JHU7 (2 bits away from this cluster)
Bootstrap support for A3GHN5 as seed ortholog is 100%.

Group of orthologs #177. Best score 116 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:116 S.stipitis:116

Q5JFL7              	100.00%		A3LP60              	100.00%
Bootstrap support for Q5JFL7 as seed ortholog is 100%.
Bootstrap support for A3LP60 as seed ortholog is 100%.

Group of orthologs #178. Best score 115 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:115 S.stipitis:46

Q5JJF2              	100.00%		A3LRQ6              	100.00%
Bootstrap support for Q5JJF2 as seed ortholog is 100%.
Bootstrap support for A3LRQ6 as seed ortholog is 97%.

Group of orthologs #179. Best score 114 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:114 S.stipitis:35

Q5JJ45              	100.00%		A3LPM6              	100.00%
                    	       		A3LSX4              	23.96%
Bootstrap support for Q5JJ45 as seed ortholog is 100%.
Bootstrap support for A3LPM6 as seed ortholog is 87%.

Group of orthologs #180. Best score 114 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:114 S.stipitis:29

Q5JIR6              	100.00%		A3GGM6              	100.00%
Bootstrap support for Q5JIR6 as seed ortholog is 100%.
Bootstrap support for A3GGM6 as seed ortholog is 83%.

Group of orthologs #181. Best score 113 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:113 S.stipitis:113

O52958              	100.00%		A3LVW1              	100.00%
                    	       		A3LTI2              	12.21%
                    	       		A3GG91              	11.05%
                    	       		A3LZG8              	5.53%
Bootstrap support for O52958 as seed ortholog is 100%.
Bootstrap support for A3LVW1 as seed ortholog is 100%.

Group of orthologs #182. Best score 113 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:113 S.stipitis:113

Q5JGC8              	100.00%		A3LWK8              	100.00%
                    	       		A3LX31              	20.51%
Bootstrap support for Q5JGC8 as seed ortholog is 100%.
Bootstrap support for A3LWK8 as seed ortholog is 100%.

Group of orthologs #183. Best score 113 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:113 S.stipitis:113

Q5JEZ6              	100.00%		A3LNT2              	100.00%
Bootstrap support for Q5JEZ6 as seed ortholog is 100%.
Bootstrap support for A3LNT2 as seed ortholog is 100%.

Group of orthologs #184. Best score 113 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:113 S.stipitis:113

Q5JJG7              	100.00%		A3LPI4              	100.00%
Bootstrap support for Q5JJG7 as seed ortholog is 100%.
Bootstrap support for A3LPI4 as seed ortholog is 100%.

Group of orthologs #185. Best score 111 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:111 S.stipitis:111

P58502              	100.00%		A3LTQ3              	100.00%
                    	       		A3LY46              	41.29%
                    	       		A3GH40              	13.38%
Bootstrap support for P58502 as seed ortholog is 100%.
Bootstrap support for A3LTQ3 as seed ortholog is 100%.

Group of orthologs #186. Best score 111 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:111 S.stipitis:111

Q5JIZ7              	100.00%		A3LRC4              	100.00%
                    	       		A3LWK4              	12.24%
                    	       		A3LRL7              	6.94%
Bootstrap support for Q5JIZ7 as seed ortholog is 100%.
Bootstrap support for A3LRC4 as seed ortholog is 100%.

Group of orthologs #187. Best score 111 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:111 S.stipitis:111

Q5JFJ9              	100.00%		A3GI53              	100.00%
Bootstrap support for Q5JFJ9 as seed ortholog is 100%.
Bootstrap support for A3GI53 as seed ortholog is 100%.

Group of orthologs #188. Best score 110 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:110 S.stipitis:110

Q5JDH3              	100.00%		A3GHH8              	100.00%
Bootstrap support for Q5JDH3 as seed ortholog is 100%.
Bootstrap support for A3GHH8 as seed ortholog is 100%.

Group of orthologs #189. Best score 110 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:110 S.stipitis:110

Q5JH18              	100.00%		A3LWF3              	100.00%
Bootstrap support for Q5JH18 as seed ortholog is 100%.
Bootstrap support for A3LWF3 as seed ortholog is 100%.

Group of orthologs #190. Best score 109 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:109 S.stipitis:62

Q5JIR7              	100.00%		A3LTY6              	100.00%
Bootstrap support for Q5JIR7 as seed ortholog is 100%.
Bootstrap support for A3LTY6 as seed ortholog is 96%.

Group of orthologs #191. Best score 108 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:108 S.stipitis:108

Q5JIQ8              	100.00%		A3GI00              	100.00%
Bootstrap support for Q5JIQ8 as seed ortholog is 100%.
Bootstrap support for A3GI00 as seed ortholog is 100%.

Group of orthologs #192. Best score 107 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:107 S.stipitis:107

Q5JDS2              	100.00%		A3GF60              	100.00%
                    	       		A3LUS8              	44.78%
Bootstrap support for Q5JDS2 as seed ortholog is 100%.
Bootstrap support for A3GF60 as seed ortholog is 100%.

Group of orthologs #193. Best score 106 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:106 S.stipitis:106

Q5JDI6              	100.00%		A3LR93              	100.00%
Bootstrap support for Q5JDI6 as seed ortholog is 100%.
Bootstrap support for A3LR93 as seed ortholog is 100%.

Group of orthologs #194. Best score 106 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:106 S.stipitis:29

Q76CZ2              	100.00%		A3GH30              	100.00%
Bootstrap support for Q76CZ2 as seed ortholog is 100%.
Bootstrap support for A3GH30 as seed ortholog is 74%.
Alternative seed ortholog is A3LVI9 (29 bits away from this cluster)

Group of orthologs #195. Best score 106 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:106 S.stipitis:106

Q5JH35              	100.00%		A3LTA4              	100.00%
Bootstrap support for Q5JH35 as seed ortholog is 100%.
Bootstrap support for A3LTA4 as seed ortholog is 100%.

Group of orthologs #196. Best score 105 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:105 S.stipitis:19

Q5JDJ9              	100.00%		A3LVY9              	100.00%
Q5JHL8              	22.57%		
Bootstrap support for Q5JDJ9 as seed ortholog is 100%.
Bootstrap support for A3LVY9 as seed ortholog is 78%.

Group of orthologs #197. Best score 105 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:105 S.stipitis:105

Q5JIT6              	100.00%		A3LY76              	100.00%
Bootstrap support for Q5JIT6 as seed ortholog is 100%.
Bootstrap support for A3LY76 as seed ortholog is 100%.

Group of orthologs #198. Best score 104 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:104 S.stipitis:104

Q5JGK8              	100.00%		A3LZU9              	100.00%
                    	       		A3LQR8              	29.84%
                    	       		A3LSD2              	27.67%
Bootstrap support for Q5JGK8 as seed ortholog is 100%.
Bootstrap support for A3LZU9 as seed ortholog is 100%.

Group of orthologs #199. Best score 102 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:102 S.stipitis:34

Q5JI09              	100.00%		A3LRU9              	100.00%
                    	       		A3LSD4              	59.43%
                    	       		A3LZK0              	36.42%
                    	       		A3LTU8              	19.25%
                    	       		P31867              	16.60%
                    	       		A3LTR2              	9.06%
                    	       		A3LX80              	8.30%
                    	       		A3LTR1              	8.11%
                    	       		A3LWN9              	6.79%
Bootstrap support for Q5JI09 as seed ortholog is 100%.
Bootstrap support for A3LRU9 as seed ortholog is 78%.

Group of orthologs #200. Best score 102 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:102 S.stipitis:102

Q5JDH4              	100.00%		A3LU90              	100.00%
Bootstrap support for Q5JDH4 as seed ortholog is 100%.
Bootstrap support for A3LU90 as seed ortholog is 100%.

Group of orthologs #201. Best score 101 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:101 S.stipitis:101

Q5JET7              	100.00%		A3LT38              	100.00%
Bootstrap support for Q5JET7 as seed ortholog is 100%.
Bootstrap support for A3LT38 as seed ortholog is 100%.

Group of orthologs #202. Best score 100 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:100 S.stipitis:100

Q5JD52              	100.00%		A3LN87              	100.00%
Bootstrap support for Q5JD52 as seed ortholog is 100%.
Bootstrap support for A3LN87 as seed ortholog is 100%.

Group of orthologs #203. Best score 100 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:100 S.stipitis:100

Q5JIR1              	100.00%		A3GF08              	100.00%
Bootstrap support for Q5JIR1 as seed ortholog is 100%.
Bootstrap support for A3GF08 as seed ortholog is 100%.

Group of orthologs #204. Best score 100 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:100 S.stipitis:100

Q5JI91              	100.00%		A3LR22              	100.00%
Bootstrap support for Q5JI91 as seed ortholog is 100%.
Bootstrap support for A3LR22 as seed ortholog is 100%.

Group of orthologs #205. Best score 99 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:99 S.stipitis:99

Q5JGQ5              	100.00%		A3LMV7              	100.00%
Q5JIE2              	100.00%		A3LSB0              	100.00%
Q5JGQ4              	54.64%		A3LX79              	100.00%
                    	       		A3GID3              	29.53%
Bootstrap support for Q5JGQ5 as seed ortholog is 100%.
Bootstrap support for Q5JIE2 as seed ortholog is 100%.
Bootstrap support for A3LMV7 as seed ortholog is 100%.
Bootstrap support for A3LSB0 as seed ortholog is 100%.
Bootstrap support for A3LX79 as seed ortholog is 100%.

Group of orthologs #206. Best score 99 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:99 S.stipitis:99

Q5JF32              	100.00%		A3GG94              	100.00%
Q5JFD3              	44.62%		
Bootstrap support for Q5JF32 as seed ortholog is 100%.
Bootstrap support for A3GG94 as seed ortholog is 100%.

Group of orthologs #207. Best score 99 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:99 S.stipitis:99

Q5JIS3              	100.00%		A3LRB1              	100.00%
Bootstrap support for Q5JIS3 as seed ortholog is 100%.
Bootstrap support for A3LRB1 as seed ortholog is 100%.

Group of orthologs #208. Best score 98 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:98 S.stipitis:98

Q5JIW4              	100.00%		A3GI76              	100.00%
Q5JI77              	16.06%		
Bootstrap support for Q5JIW4 as seed ortholog is 100%.
Bootstrap support for A3GI76 as seed ortholog is 100%.

Group of orthologs #209. Best score 98 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:98 S.stipitis:98

Q5JEW5              	100.00%		A3GHN0              	100.00%
Bootstrap support for Q5JEW5 as seed ortholog is 100%.
Bootstrap support for A3GHN0 as seed ortholog is 100%.

Group of orthologs #210. Best score 98 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:98 S.stipitis:98

Q5JD35              	100.00%		A3LQN1              	100.00%
Bootstrap support for Q5JD35 as seed ortholog is 100%.
Bootstrap support for A3LQN1 as seed ortholog is 100%.

Group of orthologs #211. Best score 96 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:96 S.stipitis:96

Q5JER0              	100.00%		A3LWE2              	100.00%
Q5JHB4              	19.24%		
Bootstrap support for Q5JER0 as seed ortholog is 100%.
Bootstrap support for A3LWE2 as seed ortholog is 100%.

Group of orthologs #212. Best score 96 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:96 S.stipitis:96

Q5JJF6              	100.00%		A3GFB5              	100.00%
Bootstrap support for Q5JJF6 as seed ortholog is 100%.
Bootstrap support for A3GFB5 as seed ortholog is 100%.

Group of orthologs #213. Best score 96 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:32 S.stipitis:96

Q5JCY5              	100.00%		A3LR09              	100.00%
Bootstrap support for Q5JCY5 as seed ortholog is 82%.
Bootstrap support for A3LR09 as seed ortholog is 100%.

Group of orthologs #214. Best score 96 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:96 S.stipitis:29

Q5JDW2              	100.00%		A3LXY3              	100.00%
Bootstrap support for Q5JDW2 as seed ortholog is 100%.
Bootstrap support for A3LXY3 as seed ortholog is 46%.
Alternative seed ortholog is A3GG11 (29 bits away from this cluster)

Group of orthologs #215. Best score 95 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:95 S.stipitis:31

Q5JIE4              	100.00%		A3LR65              	100.00%
Q5JJ05              	9.34%		
Bootstrap support for Q5JIE4 as seed ortholog is 100%.
Bootstrap support for A3LR65 as seed ortholog is 76%.

Group of orthologs #216. Best score 95 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:95 S.stipitis:95

Q5JI74              	100.00%		A3GFV6              	100.00%
Bootstrap support for Q5JI74 as seed ortholog is 100%.
Bootstrap support for A3GFV6 as seed ortholog is 100%.

Group of orthologs #217. Best score 94 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:94 S.stipitis:11

Q5JFM9              	100.00%		A3LWH5              	100.00%
Q5JDZ9              	7.65%		
Bootstrap support for Q5JFM9 as seed ortholog is 100%.
Bootstrap support for A3LWH5 as seed ortholog is 63%.
Alternative seed ortholog is A3LUJ0 (11 bits away from this cluster)

Group of orthologs #218. Best score 94 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:94 S.stipitis:16

Q5JIA1              	100.00%		A3LWI9              	100.00%
Bootstrap support for Q5JIA1 as seed ortholog is 100%.
Bootstrap support for A3LWI9 as seed ortholog is 69%.
Alternative seed ortholog is A3LVC9 (16 bits away from this cluster)

Group of orthologs #219. Best score 93 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:43 S.stipitis:93

Q5JFZ8              	100.00%		A3LYY5              	100.00%
Q5JGP4              	20.93%		A3GI90              	8.96%
Q5JJB9              	15.36%		A3LR48              	8.61%
Q5JHY2              	12.72%		
Bootstrap support for Q5JFZ8 as seed ortholog is 79%.
Bootstrap support for A3LYY5 as seed ortholog is 100%.

Group of orthologs #220. Best score 93 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:93 S.stipitis:93

Q5JFT0              	100.00%		Q9C1D4              	100.00%
Bootstrap support for Q5JFT0 as seed ortholog is 100%.
Bootstrap support for Q9C1D4 as seed ortholog is 100%.

Group of orthologs #221. Best score 92 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:92 S.stipitis:92

Q5JFJ1              	100.00%		A3LR95              	100.00%
Q5JF59              	41.81%		A3LY04              	9.62%
Q5JJ54              	30.60%		
Q5JEB0              	28.11%		
Q5JG78              	21.17%		
Q5JHD4              	7.83%		
Q5JEP9              	7.30%		
Q5JE43              	6.58%		
Q5JJ96              	5.69%		
Q5JEM4              	5.52%		
Bootstrap support for Q5JFJ1 as seed ortholog is 100%.
Bootstrap support for A3LR95 as seed ortholog is 100%.

Group of orthologs #222. Best score 92 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:92 S.stipitis:92

Q5JGM4              	100.00%		A3LUW5              	100.00%
                    	       		A3LX67              	100.00%
Bootstrap support for Q5JGM4 as seed ortholog is 100%.
Bootstrap support for A3LUW5 as seed ortholog is 100%.
Bootstrap support for A3LX67 as seed ortholog is 100%.

Group of orthologs #223. Best score 92 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:92 S.stipitis:92

Q5JEB7              	100.00%		A3LQW0              	100.00%
Bootstrap support for Q5JEB7 as seed ortholog is 100%.
Bootstrap support for A3LQW0 as seed ortholog is 100%.

Group of orthologs #224. Best score 92 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:92 S.stipitis:92

Q5JEX8              	100.00%		A3LVK6              	100.00%
Bootstrap support for Q5JEX8 as seed ortholog is 100%.
Bootstrap support for A3LVK6 as seed ortholog is 100%.

Group of orthologs #225. Best score 91 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:91 S.stipitis:91

Q5JI34              	100.00%		A3LR12              	100.00%
                    	       		A3GHK6              	13.16%
Bootstrap support for Q5JI34 as seed ortholog is 100%.
Bootstrap support for A3LR12 as seed ortholog is 100%.

Group of orthologs #226. Best score 91 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:91 S.stipitis:24

Q5JET2              	100.00%		A3LX69              	100.00%
Bootstrap support for Q5JET2 as seed ortholog is 100%.
Bootstrap support for A3LX69 as seed ortholog is 74%.
Alternative seed ortholog is A3GI03 (24 bits away from this cluster)

Group of orthologs #227. Best score 90 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:90 S.stipitis:21

Q5JIB6              	100.00%		A3LWP2              	100.00%
Q5JH42              	23.78%		
Bootstrap support for Q5JIB6 as seed ortholog is 100%.
Bootstrap support for A3LWP2 as seed ortholog is 69%.
Alternative seed ortholog is A3GEY7 (21 bits away from this cluster)

Group of orthologs #228. Best score 89 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:89 S.stipitis:46

Q5JGR3              	100.00%		A3GHK4              	100.00%
                    	       		A3M070              	100.00%
Bootstrap support for Q5JGR3 as seed ortholog is 100%.
Bootstrap support for A3GHK4 as seed ortholog is 99%.
Bootstrap support for A3M070 as seed ortholog is 99%.

Group of orthologs #229. Best score 89 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:89 S.stipitis:7

Q5JJF4              	100.00%		A3GF98              	100.00%
Bootstrap support for Q5JJF4 as seed ortholog is 100%.
Bootstrap support for A3GF98 as seed ortholog is 57%.
Alternative seed ortholog is A3GGP5 (7 bits away from this cluster)

Group of orthologs #230. Best score 88 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:88 S.stipitis:8

Q5JH34              	100.00%		A3GHB0              	100.00%
Bootstrap support for Q5JH34 as seed ortholog is 100%.
Bootstrap support for A3GHB0 as seed ortholog is 61%.
Alternative seed ortholog is A3LNL6 (8 bits away from this cluster)

Group of orthologs #231. Best score 87 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:87 S.stipitis:12

Q5JJE5              	100.00%		A3LPI1              	100.00%
                    	       		A3LZX3              	80.00%
                    	       		A3GHL5              	19.80%
Bootstrap support for Q5JJE5 as seed ortholog is 100%.
Bootstrap support for A3LPI1 as seed ortholog is 73%.
Alternative seed ortholog is A3GGB1 (12 bits away from this cluster)

Group of orthologs #232. Best score 87 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:5 S.stipitis:87

Q5JHJ1              	100.00%		A3GEW4              	100.00%
Bootstrap support for Q5JHJ1 as seed ortholog is 55%.
Alternative seed ortholog is Q5JFY9 (5 bits away from this cluster)
Bootstrap support for A3GEW4 as seed ortholog is 100%.

Group of orthologs #233. Best score 87 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:87 S.stipitis:87

Q5JJF9              	100.00%		A3LR81              	100.00%
Bootstrap support for Q5JJF9 as seed ortholog is 100%.
Bootstrap support for A3LR81 as seed ortholog is 100%.

Group of orthologs #234. Best score 87 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:87 S.stipitis:87

Q5JGC7              	100.00%		A3LV50              	100.00%
Bootstrap support for Q5JGC7 as seed ortholog is 100%.
Bootstrap support for A3LV50 as seed ortholog is 100%.

Group of orthologs #235. Best score 87 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:87 S.stipitis:87

Q5JFZ5              	100.00%		A3LZ30              	100.00%
Bootstrap support for Q5JFZ5 as seed ortholog is 100%.
Bootstrap support for A3LZ30 as seed ortholog is 100%.

Group of orthologs #236. Best score 86 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:86 S.stipitis:86

Q5JIT0              	100.00%		A3LPD5              	100.00%
Bootstrap support for Q5JIT0 as seed ortholog is 100%.
Bootstrap support for A3LPD5 as seed ortholog is 100%.

Group of orthologs #237. Best score 86 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:86 S.stipitis:86

Q5JGN5              	100.00%		A3LZU1              	100.00%
Bootstrap support for Q5JGN5 as seed ortholog is 100%.
Bootstrap support for A3LZU1 as seed ortholog is 100%.

Group of orthologs #238. Best score 85 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:37 S.stipitis:35

Q5JEU9              	100.00%		A3LRU7              	100.00%
                    	       		A3LY98              	8.54%
Bootstrap support for Q5JEU9 as seed ortholog is 83%.
Bootstrap support for A3LRU7 as seed ortholog is 82%.

Group of orthologs #239. Best score 84 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:84 S.stipitis:84

Q5JD31              	100.00%		A3GFV7              	100.00%
Bootstrap support for Q5JD31 as seed ortholog is 100%.
Bootstrap support for A3GFV7 as seed ortholog is 100%.

Group of orthologs #240. Best score 84 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:84 S.stipitis:84

O74035              	100.00%		A3LSC6              	100.00%
Bootstrap support for O74035 as seed ortholog is 100%.
Bootstrap support for A3LSC6 as seed ortholog is 100%.

Group of orthologs #241. Best score 83 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:83 S.stipitis:83

Q5JDH9              	100.00%		A3LR50              	100.00%
Bootstrap support for Q5JDH9 as seed ortholog is 100%.
Bootstrap support for A3LR50 as seed ortholog is 100%.

Group of orthologs #242. Best score 83 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:83 S.stipitis:83

Q5JFR6              	100.00%		A3LQN3              	100.00%
Bootstrap support for Q5JFR6 as seed ortholog is 100%.
Bootstrap support for A3LQN3 as seed ortholog is 100%.

Group of orthologs #243. Best score 82 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:82 S.stipitis:82

Q5JFI2              	100.00%		A3GHM9              	100.00%
                    	       		A3LR07              	70.68%
                    	       		A3LP41              	38.08%
                    	       		A3GH68              	9.18%
Bootstrap support for Q5JFI2 as seed ortholog is 100%.
Bootstrap support for A3GHM9 as seed ortholog is 100%.

Group of orthologs #244. Best score 82 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:82 S.stipitis:82

Q5JGS7              	100.00%		A3LYA6              	100.00%
Bootstrap support for Q5JGS7 as seed ortholog is 100%.
Bootstrap support for A3LYA6 as seed ortholog is 100%.

Group of orthologs #245. Best score 81 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:81 S.stipitis:81

Q5JJ59              	100.00%		A3LUP5              	100.00%
Q5JID9              	9.25%		A3LNM1              	85.71%
                    	       		A3LXA2              	81.04%
                    	       		A3LWN5              	75.83%
                    	       		A3GIC0              	67.57%
Bootstrap support for Q5JJ59 as seed ortholog is 100%.
Bootstrap support for A3LUP5 as seed ortholog is 100%.

Group of orthologs #246. Best score 81 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:81 S.stipitis:81

Q5JIV0              	100.00%		A3GGL0              	100.00%
Bootstrap support for Q5JIV0 as seed ortholog is 100%.
Bootstrap support for A3GGL0 as seed ortholog is 100%.

Group of orthologs #247. Best score 81 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:81 S.stipitis:81

Q5JHE8              	100.00%		A3LW57              	100.00%
Bootstrap support for Q5JHE8 as seed ortholog is 100%.
Bootstrap support for A3LW57 as seed ortholog is 100%.

Group of orthologs #248. Best score 80 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:80 S.stipitis:80

Q5JDH1              	100.00%		A3LV58              	100.00%
Bootstrap support for Q5JDH1 as seed ortholog is 100%.
Bootstrap support for A3LV58 as seed ortholog is 100%.

Group of orthologs #249. Best score 79 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:79 S.stipitis:79

Q5JFX3              	100.00%		A3LNG9              	100.00%
Bootstrap support for Q5JFX3 as seed ortholog is 100%.
Bootstrap support for A3LNG9 as seed ortholog is 100%.

Group of orthologs #250. Best score 79 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:79 S.stipitis:79

Q5JIB2              	100.00%		A3LPV1              	100.00%
Bootstrap support for Q5JIB2 as seed ortholog is 100%.
Bootstrap support for A3LPV1 as seed ortholog is 100%.

Group of orthologs #251. Best score 79 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:79 S.stipitis:79

Q5JDB8              	100.00%		A3M0I6              	100.00%
Bootstrap support for Q5JDB8 as seed ortholog is 100%.
Bootstrap support for A3M0I6 as seed ortholog is 100%.

Group of orthologs #252. Best score 79 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:79 S.stipitis:79

Q5JI92              	100.00%		A3LX03              	100.00%
Bootstrap support for Q5JI92 as seed ortholog is 100%.
Bootstrap support for A3LX03 as seed ortholog is 100%.

Group of orthologs #253. Best score 78 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:78 S.stipitis:78

Q5JDG9              	100.00%		A3GI10              	100.00%
Bootstrap support for Q5JDG9 as seed ortholog is 100%.
Bootstrap support for A3GI10 as seed ortholog is 100%.

Group of orthologs #254. Best score 78 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:78 S.stipitis:78

Q5JH52              	100.00%		A3GF89              	100.00%
Bootstrap support for Q5JH52 as seed ortholog is 100%.
Bootstrap support for A3GF89 as seed ortholog is 100%.

Group of orthologs #255. Best score 78 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:78 S.stipitis:78

Q5JI44              	100.00%		A3LNK3              	100.00%
Bootstrap support for Q5JI44 as seed ortholog is 100%.
Bootstrap support for A3LNK3 as seed ortholog is 100%.

Group of orthologs #256. Best score 78 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:78 S.stipitis:78

Q5JGQ6              	100.00%		A3LVF9              	100.00%
Bootstrap support for Q5JGQ6 as seed ortholog is 100%.
Bootstrap support for A3LVF9 as seed ortholog is 100%.

Group of orthologs #257. Best score 77 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:77 S.stipitis:77

Q5JE74              	100.00%		A3LQB2              	100.00%
Bootstrap support for Q5JE74 as seed ortholog is 100%.
Bootstrap support for A3LQB2 as seed ortholog is 100%.

Group of orthologs #258. Best score 77 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:77 S.stipitis:77

Q5JJG5              	100.00%		A3LV31              	100.00%
Bootstrap support for Q5JJG5 as seed ortholog is 100%.
Bootstrap support for A3LV31 as seed ortholog is 100%.

Group of orthologs #259. Best score 76 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:76 S.stipitis:76

Q5JG26              	100.00%		A3GFC5              	100.00%
Bootstrap support for Q5JG26 as seed ortholog is 100%.
Bootstrap support for A3GFC5 as seed ortholog is 100%.

Group of orthologs #260. Best score 76 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:76 S.stipitis:76

Q5JEE0              	100.00%		A3LND7              	100.00%
Bootstrap support for Q5JEE0 as seed ortholog is 100%.
Bootstrap support for A3LND7 as seed ortholog is 100%.

Group of orthologs #261. Best score 76 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:76 S.stipitis:27

Q5JHP6              	100.00%		A3GG95              	100.00%
Bootstrap support for Q5JHP6 as seed ortholog is 100%.
Bootstrap support for A3GG95 as seed ortholog is 85%.

Group of orthologs #262. Best score 76 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:76 S.stipitis:76

Q5JDM6              	100.00%		A3LVS4              	100.00%
Bootstrap support for Q5JDM6 as seed ortholog is 100%.
Bootstrap support for A3LVS4 as seed ortholog is 100%.

Group of orthologs #263. Best score 75 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:75 S.stipitis:75

Q5JHR7              	100.00%		A3LPT0              	100.00%
Bootstrap support for Q5JHR7 as seed ortholog is 100%.
Bootstrap support for A3LPT0 as seed ortholog is 100%.

Group of orthologs #264. Best score 74 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:74 S.stipitis:24

Q5JHS6              	100.00%		A3LSQ9              	100.00%
                    	       		A3LU62              	46.31%
                    	       		A3LT05              	44.20%
                    	       		A3LT06              	44.20%
                    	       		A3LV53              	33.64%
                    	       		A3GH19              	10.29%
Bootstrap support for Q5JHS6 as seed ortholog is 100%.
Bootstrap support for A3LSQ9 as seed ortholog is 67%.
Alternative seed ortholog is A3LPQ4 (24 bits away from this cluster)

Group of orthologs #265. Best score 74 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:74 S.stipitis:74

Q5JJ26              	100.00%		A3LRN4              	100.00%
Bootstrap support for Q5JJ26 as seed ortholog is 100%.
Bootstrap support for A3LRN4 as seed ortholog is 100%.

Group of orthologs #266. Best score 74 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:74 S.stipitis:74

Q5JIR5              	100.00%		A3LTN3              	100.00%
Bootstrap support for Q5JIR5 as seed ortholog is 100%.
Bootstrap support for A3LTN3 as seed ortholog is 100%.

Group of orthologs #267. Best score 74 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:74 S.stipitis:74

Q5JH53              	100.00%		A3LZ82              	100.00%
Bootstrap support for Q5JH53 as seed ortholog is 100%.
Bootstrap support for A3LZ82 as seed ortholog is 100%.

Group of orthologs #268. Best score 73 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:73 S.stipitis:30

Q68BJ6              	100.00%		A3LQX4              	100.00%
Q68BJ7              	34.06%		
Q6I7B6              	30.31%		
Bootstrap support for Q68BJ6 as seed ortholog is 100%.
Bootstrap support for A3LQX4 as seed ortholog is 70%.
Alternative seed ortholog is A3GI60 (30 bits away from this cluster)

Group of orthologs #269. Best score 73 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:73 S.stipitis:73

Q5JI29              	100.00%		A3LQ43              	100.00%
Bootstrap support for Q5JI29 as seed ortholog is 100%.
Bootstrap support for A3LQ43 as seed ortholog is 100%.

Group of orthologs #270. Best score 72 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:72 S.stipitis:72

Q5JFN5              	100.00%		A3LZN7              	100.00%
Q5JD27              	10.28%		
Bootstrap support for Q5JFN5 as seed ortholog is 100%.
Bootstrap support for A3LZN7 as seed ortholog is 100%.

Group of orthologs #271. Best score 72 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:72 S.stipitis:30

Q5JIE9              	100.00%		A3LRT0              	100.00%
Bootstrap support for Q5JIE9 as seed ortholog is 100%.
Bootstrap support for A3LRT0 as seed ortholog is 85%.

Group of orthologs #272. Best score 72 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:72 S.stipitis:72

Q5JI98              	100.00%		A3LSC0              	100.00%
Bootstrap support for Q5JI98 as seed ortholog is 100%.
Bootstrap support for A3LSC0 as seed ortholog is 100%.

Group of orthologs #273. Best score 71 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:71 S.stipitis:71

Q5JGR4              	100.00%		A3LWA3              	100.00%
                    	       		A3LQP4              	95.00%
Bootstrap support for Q5JGR4 as seed ortholog is 100%.
Bootstrap support for A3LWA3 as seed ortholog is 100%.

Group of orthologs #274. Best score 71 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:71 S.stipitis:71

Q5JGC2              	100.00%		A3LQL6              	100.00%
Bootstrap support for Q5JGC2 as seed ortholog is 100%.
Bootstrap support for A3LQL6 as seed ortholog is 100%.

Group of orthologs #275. Best score 70 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:70 S.stipitis:70

Q5JFW9              	100.00%		A3LYM2              	100.00%
Bootstrap support for Q5JFW9 as seed ortholog is 100%.
Bootstrap support for A3LYM2 as seed ortholog is 100%.

Group of orthologs #276. Best score 69 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:69 S.stipitis:69

Q5JIY3              	100.00%		A3LTU4              	100.00%
                    	       		A3LQ79              	40.80%
Bootstrap support for Q5JIY3 as seed ortholog is 100%.
Bootstrap support for A3LTU4 as seed ortholog is 100%.

Group of orthologs #277. Best score 68 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:24 S.stipitis:68

Q5JH77              	100.00%		A3LQD1              	100.00%
Q5JIG9              	10.69%		
Q5JG56              	10.47%		
Q5JDD9              	10.02%		
Q5JGV1              	9.58%		
Q5JIN8              	9.35%		
Q5JIB0              	8.91%		
Q5JDQ2              	8.69%		
Q5JIG1              	8.24%		
Q5JCX0              	7.80%		
Q5JHL7              	7.57%		
Q5JJ95              	6.90%		
Q5JDA7              	6.46%		
Q5JG06              	6.46%		
Q5JGD3              	6.46%		
Q5JDD3              	5.79%		
Q5JG38              	5.57%		
Q5JHJ6              	5.35%		
Bootstrap support for Q5JH77 as seed ortholog is 76%.
Bootstrap support for A3LQD1 as seed ortholog is 100%.

Group of orthologs #278. Best score 68 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:68 S.stipitis:68

Q5JHH1              	100.00%		A3LNA8              	100.00%
Bootstrap support for Q5JHH1 as seed ortholog is 100%.
Bootstrap support for A3LNA8 as seed ortholog is 100%.

Group of orthologs #279. Best score 68 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:68 S.stipitis:8

Q5JF34              	100.00%		A3LW94              	100.00%
Bootstrap support for Q5JF34 as seed ortholog is 100%.
Bootstrap support for A3LW94 as seed ortholog is 65%.
Alternative seed ortholog is A3LYD6 (8 bits away from this cluster)

Group of orthologs #280. Best score 67 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:67 S.stipitis:67

Q5JD36              	100.00%		A3GI07              	100.00%
Bootstrap support for Q5JD36 as seed ortholog is 100%.
Bootstrap support for A3GI07 as seed ortholog is 100%.

Group of orthologs #281. Best score 67 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:67 S.stipitis:67

Q5JE35              	100.00%		A3LS70              	100.00%
Bootstrap support for Q5JE35 as seed ortholog is 100%.
Bootstrap support for A3LS70 as seed ortholog is 100%.

Group of orthologs #282. Best score 66 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:24 S.stipitis:22

Q5JDZ1              	100.00%		A3LNI2              	100.00%
Bootstrap support for Q5JDZ1 as seed ortholog is 84%.
Bootstrap support for A3LNI2 as seed ortholog is 82%.

Group of orthologs #283. Best score 66 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:66 S.stipitis:66

Q5JI42              	100.00%		A3LV26              	100.00%
Bootstrap support for Q5JI42 as seed ortholog is 100%.
Bootstrap support for A3LV26 as seed ortholog is 100%.

Group of orthologs #284. Best score 66 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:66 S.stipitis:20

Q5JHF4              	100.00%		A3LYN3              	100.00%
Bootstrap support for Q5JHF4 as seed ortholog is 100%.
Bootstrap support for A3LYN3 as seed ortholog is 76%.

Group of orthologs #285. Best score 65 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:65 S.stipitis:65

Q5JDV0              	100.00%		A3LP70              	100.00%
                    	       		A3LV01              	17.03%
                    	       		A3LMY7              	12.20%
                    	       		A3LQL2              	10.36%
                    	       		A3M085              	9.32%
                    	       		A3LUR4              	8.06%
                    	       		A3LUR5              	7.59%
                    	       		A3M0J7              	6.67%
                    	       		A3GHD8              	6.21%
                    	       		A3LWM5              	6.21%
                    	       		A3M0B3              	5.75%
                    	       		A3LTP7              	5.64%
Bootstrap support for Q5JDV0 as seed ortholog is 100%.
Bootstrap support for A3LP70 as seed ortholog is 100%.

Group of orthologs #286. Best score 65 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:65 S.stipitis:65

Q5JJC9              	100.00%		A3GGI8              	100.00%
Bootstrap support for Q5JJC9 as seed ortholog is 100%.
Bootstrap support for A3GGI8 as seed ortholog is 100%.

Group of orthologs #287. Best score 65 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:65 S.stipitis:65

Q5JDG1              	100.00%		A3LXS1              	100.00%
Bootstrap support for Q5JDG1 as seed ortholog is 100%.
Bootstrap support for A3LXS1 as seed ortholog is 100%.

Group of orthologs #288. Best score 64 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:64 S.stipitis:64

Q5JDE4              	100.00%		A3LS27              	100.00%
                    	       		A3LS28              	36.44%
                    	       		A3LQU9              	35.50%
                    	       		A3LS26              	33.84%
Bootstrap support for Q5JDE4 as seed ortholog is 100%.
Bootstrap support for A3LS27 as seed ortholog is 100%.

Group of orthologs #289. Best score 64 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:64 S.stipitis:64

Q5JHM0              	100.00%		A3LW23              	100.00%
Q5JJC2              	17.57%		
Bootstrap support for Q5JHM0 as seed ortholog is 100%.
Bootstrap support for A3LW23 as seed ortholog is 100%.

Group of orthologs #290. Best score 64 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:64 S.stipitis:64

Q5JFT1              	100.00%		A3LRU4              	100.00%
Bootstrap support for Q5JFT1 as seed ortholog is 100%.
Bootstrap support for A3LRU4 as seed ortholog is 100%.

Group of orthologs #291. Best score 64 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:64 S.stipitis:64

Q5JGH2              	100.00%		A3LVG3              	100.00%
Bootstrap support for Q5JGH2 as seed ortholog is 100%.
Bootstrap support for A3LVG3 as seed ortholog is 100%.

Group of orthologs #292. Best score 64 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:64 S.stipitis:64

Q5JJC3              	100.00%		A3LWQ7              	100.00%
Bootstrap support for Q5JJC3 as seed ortholog is 100%.
Bootstrap support for A3LWQ7 as seed ortholog is 100%.

Group of orthologs #293. Best score 62 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:62 S.stipitis:62

Q5JJG9              	100.00%		A3GFU4              	100.00%
                    	       		A3LXY8              	11.92%
Bootstrap support for Q5JJG9 as seed ortholog is 100%.
Bootstrap support for A3GFU4 as seed ortholog is 100%.

Group of orthologs #294. Best score 62 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:62 S.stipitis:12

Q5JI19              	100.00%		A3LQ09              	100.00%
Q5JIU7              	17.38%		
Bootstrap support for Q5JI19 as seed ortholog is 100%.
Bootstrap support for A3LQ09 as seed ortholog is 68%.
Alternative seed ortholog is A3LQG8 (12 bits away from this cluster)

Group of orthologs #295. Best score 62 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:62 S.stipitis:62

Q5JIX8              	100.00%		A3GHC5              	100.00%
Bootstrap support for Q5JIX8 as seed ortholog is 100%.
Bootstrap support for A3GHC5 as seed ortholog is 100%.

Group of orthologs #296. Best score 61 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:61

Q5JFK1              	100.00%		A3LUB4              	100.00%
                    	       		A3LPT7              	59.17%
                    	       		A3LMS9              	20.14%
                    	       		A3LZQ3              	14.34%
Bootstrap support for Q5JFK1 as seed ortholog is 100%.
Bootstrap support for A3LUB4 as seed ortholog is 100%.

Group of orthologs #297. Best score 61 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:61

Q8NKS4              	100.00%		A3LTP3              	100.00%
Q5JJ90              	10.85%		A3GF86              	26.99%
                    	       		A3LT66              	19.04%
Bootstrap support for Q8NKS4 as seed ortholog is 100%.
Bootstrap support for A3LTP3 as seed ortholog is 100%.

Group of orthologs #298. Best score 61 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:61

Q5JH21              	100.00%		A3GHQ3              	100.00%
Bootstrap support for Q5JH21 as seed ortholog is 100%.
Bootstrap support for A3GHQ3 as seed ortholog is 100%.

Group of orthologs #299. Best score 61 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:17

Q5JIY4              	100.00%		A3GFY9              	100.00%
Bootstrap support for Q5JIY4 as seed ortholog is 100%.
Bootstrap support for A3GFY9 as seed ortholog is 74%.
Alternative seed ortholog is A3GFG7 (17 bits away from this cluster)

Group of orthologs #300. Best score 61 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:61

Q5JJH0              	100.00%		A3LQV9              	100.00%
Bootstrap support for Q5JJH0 as seed ortholog is 100%.
Bootstrap support for A3LQV9 as seed ortholog is 100%.

Group of orthologs #301. Best score 61 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:61 S.stipitis:13

Q5JIE0              	100.00%		A3LYZ0              	100.00%
Bootstrap support for Q5JIE0 as seed ortholog is 100%.
Bootstrap support for A3LYZ0 as seed ortholog is 75%.

Group of orthologs #302. Best score 60 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:60 S.stipitis:60

Q5JGN3              	100.00%		A3LXT7              	100.00%
Bootstrap support for Q5JGN3 as seed ortholog is 100%.
Bootstrap support for A3LXT7 as seed ortholog is 100%.

Group of orthologs #303. Best score 59 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:59 S.stipitis:59

Q5JJG2              	100.00%		A3LSG4              	100.00%
Bootstrap support for Q5JJG2 as seed ortholog is 100%.
Bootstrap support for A3LSG4 as seed ortholog is 100%.

Group of orthologs #304. Best score 59 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:59 S.stipitis:59

Q5JIQ0              	100.00%		A3LYF2              	100.00%
Bootstrap support for Q5JIQ0 as seed ortholog is 100%.
Bootstrap support for A3LYF2 as seed ortholog is 100%.

Group of orthologs #305. Best score 58 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:58 S.stipitis:58

Q5JFK6              	100.00%		A3LQU5              	100.00%
Q5JES6              	26.92%		
Bootstrap support for Q5JFK6 as seed ortholog is 100%.
Bootstrap support for A3LQU5 as seed ortholog is 100%.

Group of orthologs #306. Best score 58 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:58 S.stipitis:58

Q5JII8              	100.00%		A3LVE6              	100.00%
Q5JHY3              	33.29%		
Bootstrap support for Q5JII8 as seed ortholog is 100%.
Bootstrap support for A3LVE6 as seed ortholog is 100%.

Group of orthologs #307. Best score 58 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:58 S.stipitis:58

Q5JJ42              	100.00%		A3LND1              	100.00%
Bootstrap support for Q5JJ42 as seed ortholog is 100%.
Bootstrap support for A3LND1 as seed ortholog is 100%.

Group of orthologs #308. Best score 57 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:57 S.stipitis:57

Q5JFY8              	100.00%		A3LU64              	100.00%
Bootstrap support for Q5JFY8 as seed ortholog is 100%.
Bootstrap support for A3LU64 as seed ortholog is 100%.

Group of orthologs #309. Best score 56 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:56 S.stipitis:56

Q5JHM7              	100.00%		A3LXJ4              	100.00%
Q5JEC0              	34.40%		
Bootstrap support for Q5JHM7 as seed ortholog is 100%.
Bootstrap support for A3LXJ4 as seed ortholog is 100%.

Group of orthologs #310. Best score 56 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:56 S.stipitis:56

Q5JHT3              	100.00%		A3GH77              	100.00%
Bootstrap support for Q5JHT3 as seed ortholog is 100%.
Bootstrap support for A3GH77 as seed ortholog is 100%.

Group of orthologs #311. Best score 56 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:56 S.stipitis:56

Q5JE51              	100.00%		A3LQA4              	100.00%
Bootstrap support for Q5JE51 as seed ortholog is 100%.
Bootstrap support for A3LQA4 as seed ortholog is 100%.

Group of orthologs #312. Best score 56 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:56 S.stipitis:56

Q5JJB4              	100.00%		A3LRI4              	100.00%
Bootstrap support for Q5JJB4 as seed ortholog is 100%.
Bootstrap support for A3LRI4 as seed ortholog is 100%.

Group of orthologs #313. Best score 55 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:55 S.stipitis:55

Q5JEN3              	100.00%		A3GHV4              	100.00%
                    	       		A3LPE9              	31.51%
Bootstrap support for Q5JEN3 as seed ortholog is 100%.
Bootstrap support for A3GHV4 as seed ortholog is 100%.

Group of orthologs #314. Best score 55 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:55 S.stipitis:55

Q5JHQ2              	100.00%		A3M025              	100.00%
Q5JGN8              	6.47%		
Bootstrap support for Q5JHQ2 as seed ortholog is 100%.
Bootstrap support for A3M025 as seed ortholog is 100%.

Group of orthologs #315. Best score 55 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:55 S.stipitis:55

Q5JHT1              	100.00%		A3LS72              	100.00%
Bootstrap support for Q5JHT1 as seed ortholog is 100%.
Bootstrap support for A3LS72 as seed ortholog is 100%.

Group of orthologs #316. Best score 54 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:54 S.stipitis:54

Q5JH94              	100.00%		A3GHA3              	100.00%
Bootstrap support for Q5JH94 as seed ortholog is 100%.
Bootstrap support for A3GHA3 as seed ortholog is 100%.

Group of orthologs #317. Best score 54 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:54 S.stipitis:54

Q5JH80              	100.00%		A3GI99              	100.00%
Bootstrap support for Q5JH80 as seed ortholog is 100%.
Bootstrap support for A3GI99 as seed ortholog is 100%.

Group of orthologs #318. Best score 54 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:54 S.stipitis:54

Q5JIE1              	100.00%		A3LNK5              	100.00%
Bootstrap support for Q5JIE1 as seed ortholog is 100%.
Bootstrap support for A3LNK5 as seed ortholog is 100%.

Group of orthologs #319. Best score 54 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:54 S.stipitis:54

Q5JGT6              	100.00%		A3LQI9              	100.00%
Bootstrap support for Q5JGT6 as seed ortholog is 100%.
Bootstrap support for A3LQI9 as seed ortholog is 100%.

Group of orthologs #320. Best score 54 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:54 S.stipitis:54

Q5JH78              	100.00%		A3LW99              	100.00%
Bootstrap support for Q5JH78 as seed ortholog is 100%.
Bootstrap support for A3LW99 as seed ortholog is 100%.

Group of orthologs #321. Best score 52 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:52 S.stipitis:52

Q5JIY8              	100.00%		A3LNE4              	100.00%
Bootstrap support for Q5JIY8 as seed ortholog is 100%.
Bootstrap support for A3LNE4 as seed ortholog is 100%.

Group of orthologs #322. Best score 51 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:51 S.stipitis:51

Q5JE50              	100.00%		A3LZ02              	100.00%
                    	       		A3GFX8              	90.16%
Bootstrap support for Q5JE50 as seed ortholog is 100%.
Bootstrap support for A3LZ02 as seed ortholog is 100%.

Group of orthologs #323. Best score 51 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:51 S.stipitis:51

Q5JIJ0              	100.00%		A3M0E3              	100.00%
                    	       		A3LX34              	49.87%
Bootstrap support for Q5JIJ0 as seed ortholog is 100%.
Bootstrap support for A3M0E3 as seed ortholog is 100%.

Group of orthologs #324. Best score 50 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:50 S.stipitis:50

Q5JDF3              	100.00%		A3LUN7              	100.00%
                    	       		A3GG43              	34.91%
                    	       		A3GI91              	11.32%
Bootstrap support for Q5JDF3 as seed ortholog is 100%.
Bootstrap support for A3LUN7 as seed ortholog is 100%.

Group of orthologs #325. Best score 50 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:50 S.stipitis:50

Q9YGB1              	100.00%		A3GFA8              	100.00%
Bootstrap support for Q9YGB1 as seed ortholog is 100%.
Bootstrap support for A3GFA8 as seed ortholog is 100%.

Group of orthologs #326. Best score 50 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:50 S.stipitis:50

Q5JIP5              	100.00%		A3LS90              	100.00%
Bootstrap support for Q5JIP5 as seed ortholog is 100%.
Bootstrap support for A3LS90 as seed ortholog is 100%.

Group of orthologs #327. Best score 49 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:49 S.stipitis:49

Q5JHG3              	100.00%		A3LZL0              	100.00%
Bootstrap support for Q5JHG3 as seed ortholog is 100%.
Bootstrap support for A3LZL0 as seed ortholog is 100%.

Group of orthologs #328. Best score 49 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:49 S.stipitis:49

Q5JJF5              	100.00%		A3LZT9              	100.00%
Bootstrap support for Q5JJF5 as seed ortholog is 100%.
Bootstrap support for A3LZT9 as seed ortholog is 100%.

Group of orthologs #329. Best score 48 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:48 S.stipitis:48

Q5JHR1              	100.00%		A3GFD9              	100.00%
Q5JFH5              	10.68%		
Bootstrap support for Q5JHR1 as seed ortholog is 100%.
Bootstrap support for A3GFD9 as seed ortholog is 100%.

Group of orthologs #330. Best score 48 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:48 S.stipitis:48

Q5JFK7              	100.00%		A3LMS7              	100.00%
Bootstrap support for Q5JFK7 as seed ortholog is 100%.
Bootstrap support for A3LMS7 as seed ortholog is 100%.

Group of orthologs #331. Best score 48 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:48 S.stipitis:48

Q5JJF7              	100.00%		A3GFL2              	100.00%
Bootstrap support for Q5JJF7 as seed ortholog is 100%.
Bootstrap support for A3GFL2 as seed ortholog is 100%.

Group of orthologs #332. Best score 48 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:48 S.stipitis:48

Q5JFK8              	100.00%		A3LQ32              	100.00%
Bootstrap support for Q5JFK8 as seed ortholog is 100%.
Bootstrap support for A3LQ32 as seed ortholog is 100%.

Group of orthologs #333. Best score 46 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:46 S.stipitis:2

Q5JFQ4              	100.00%		A3GH50              	100.00%
Bootstrap support for Q5JFQ4 as seed ortholog is 100%.
Bootstrap support for A3GH50 as seed ortholog is 53%.
Alternative seed ortholog is A3LR67 (2 bits away from this cluster)

Group of orthologs #334. Best score 46 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:46 S.stipitis:46

Q5JH23              	100.00%		A3GIA5              	100.00%
Bootstrap support for Q5JH23 as seed ortholog is 100%.
Bootstrap support for A3GIA5 as seed ortholog is 100%.

Group of orthologs #335. Best score 45 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:45 S.stipitis:45

Q5JEA3              	100.00%		A3LPP3              	100.00%
Bootstrap support for Q5JEA3 as seed ortholog is 100%.
Bootstrap support for A3LPP3 as seed ortholog is 100%.

Group of orthologs #336. Best score 44 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:44 S.stipitis:44

Q5JFL6              	100.00%		A3LS47              	100.00%
Bootstrap support for Q5JFL6 as seed ortholog is 100%.
Bootstrap support for A3LS47 as seed ortholog is 100%.

Group of orthologs #337. Best score 44 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:44 S.stipitis:44

Q5JDL4              	100.00%		A3LVK2              	100.00%
Bootstrap support for Q5JDL4 as seed ortholog is 100%.
Bootstrap support for A3LVK2 as seed ortholog is 100%.

Group of orthologs #338. Best score 42 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:42 S.stipitis:42

Q5JE88              	100.00%		A3LX93              	100.00%
                    	       		A3LQW8              	8.82%
Bootstrap support for Q5JE88 as seed ortholog is 100%.
Bootstrap support for A3LX93 as seed ortholog is 100%.

Group of orthologs #339. Best score 41 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:41 S.stipitis:41

Q5JIB4              	100.00%		A3LT51              	100.00%
Bootstrap support for Q5JIB4 as seed ortholog is 100%.
Bootstrap support for A3LT51 as seed ortholog is 100%.

Group of orthologs #340. Best score 40 bits
Score difference with first non-orthologous sequence - P.kodakaraensis:40 S.stipitis:40

Q5JFM4              	100.00%		A3LW45              	100.00%
Q9YGB2              	18.18%		
Bootstrap support for Q5JFM4 as seed ortholog is 100%.
Bootstrap support for A3LW45 as seed ortholog is 100%.