###################################
761 groups of orthologs
812 in-paralogs from P.jiroveci
779 in-paralogs from T.annulata
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3157 bits
Score difference with first non-orthologous sequence - P.jiroveci:3157 T.annulata:3157

L0PCQ0              	100.00%		Q4UCE6              	100.00%
Bootstrap support for L0PCQ0 as seed ortholog is 100%.
Bootstrap support for Q4UCE6 as seed ortholog is 100%.

Group of orthologs #2. Best score 1478 bits
Score difference with first non-orthologous sequence - P.jiroveci:1088 T.annulata:890

L0PB90              	100.00%		Q4UCP5              	100.00%
Bootstrap support for L0PB90 as seed ortholog is 100%.
Bootstrap support for Q4UCP5 as seed ortholog is 100%.

Group of orthologs #3. Best score 1227 bits
Score difference with first non-orthologous sequence - P.jiroveci:1227 T.annulata:1227

L0PHB1              	100.00%		Q4UB40              	100.00%
Bootstrap support for L0PHB1 as seed ortholog is 100%.
Bootstrap support for Q4UB40 as seed ortholog is 100%.

Group of orthologs #4. Best score 1134 bits
Score difference with first non-orthologous sequence - P.jiroveci:1134 T.annulata:1134

L0PG53              	100.00%		Q4UCL9              	100.00%
Bootstrap support for L0PG53 as seed ortholog is 100%.
Bootstrap support for Q4UCL9 as seed ortholog is 100%.

Group of orthologs #5. Best score 1081 bits
Score difference with first non-orthologous sequence - P.jiroveci:1081 T.annulata:1081

L0P818              	100.00%		Q4UEG9              	100.00%
Bootstrap support for L0P818 as seed ortholog is 100%.
Bootstrap support for Q4UEG9 as seed ortholog is 100%.

Group of orthologs #6. Best score 1049 bits
Score difference with first non-orthologous sequence - P.jiroveci:1049 T.annulata:389

L0PG77              	100.00%		Q4UB41              	100.00%
Bootstrap support for L0PG77 as seed ortholog is 100%.
Bootstrap support for Q4UB41 as seed ortholog is 100%.

Group of orthologs #7. Best score 1035 bits
Score difference with first non-orthologous sequence - P.jiroveci:631 T.annulata:539

L0PB43              	100.00%		Q4U940              	100.00%
Bootstrap support for L0PB43 as seed ortholog is 100%.
Bootstrap support for Q4U940 as seed ortholog is 100%.

Group of orthologs #8. Best score 993 bits
Score difference with first non-orthologous sequence - P.jiroveci:993 T.annulata:993

L0PBY6              	100.00%		Q4UBQ2              	100.00%
Bootstrap support for L0PBY6 as seed ortholog is 100%.
Bootstrap support for Q4UBQ2 as seed ortholog is 100%.

Group of orthologs #9. Best score 962 bits
Score difference with first non-orthologous sequence - P.jiroveci:962 T.annulata:962

L0P7C3              	100.00%		Q4UD12              	100.00%
Bootstrap support for L0P7C3 as seed ortholog is 100%.
Bootstrap support for Q4UD12 as seed ortholog is 100%.

Group of orthologs #10. Best score 883 bits
Score difference with first non-orthologous sequence - P.jiroveci:883 T.annulata:436

L0PAW9              	100.00%		Q4UDU8              	100.00%
L0PBZ0              	71.31%		
Bootstrap support for L0PAW9 as seed ortholog is 100%.
Bootstrap support for Q4UDU8 as seed ortholog is 100%.

Group of orthologs #11. Best score 862 bits
Score difference with first non-orthologous sequence - P.jiroveci:862 T.annulata:862

L0PD06              	100.00%		Q4UHC2              	100.00%
Bootstrap support for L0PD06 as seed ortholog is 100%.
Bootstrap support for Q4UHC2 as seed ortholog is 100%.

Group of orthologs #12. Best score 847 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 T.annulata:184

L0PEK6              	100.00%		P16019              	100.00%
Bootstrap support for L0PEK6 as seed ortholog is 99%.
Bootstrap support for P16019 as seed ortholog is 99%.

Group of orthologs #13. Best score 810 bits
Score difference with first non-orthologous sequence - P.jiroveci:810 T.annulata:810

L0PDK3              	100.00%		Q4UI92              	100.00%
Bootstrap support for L0PDK3 as seed ortholog is 100%.
Bootstrap support for Q4UI92 as seed ortholog is 100%.

Group of orthologs #14. Best score 800 bits
Score difference with first non-orthologous sequence - P.jiroveci:248 T.annulata:278

L0PFS2              	100.00%		Q4UFA6              	100.00%
Bootstrap support for L0PFS2 as seed ortholog is 100%.
Bootstrap support for Q4UFA6 as seed ortholog is 100%.

Group of orthologs #15. Best score 790 bits
Score difference with first non-orthologous sequence - P.jiroveci:790 T.annulata:790

L0PGJ4              	100.00%		Q4U8N2              	100.00%
Bootstrap support for L0PGJ4 as seed ortholog is 100%.
Bootstrap support for Q4U8N2 as seed ortholog is 100%.

Group of orthologs #16. Best score 787 bits
Score difference with first non-orthologous sequence - P.jiroveci:787 T.annulata:787

L0PDF1              	100.00%		Q4U8J4              	100.00%
Bootstrap support for L0PDF1 as seed ortholog is 100%.
Bootstrap support for Q4U8J4 as seed ortholog is 100%.

Group of orthologs #17. Best score 746 bits
Score difference with first non-orthologous sequence - P.jiroveci:239 T.annulata:154

L0PFC8              	100.00%		Q4UIK9              	100.00%
Bootstrap support for L0PFC8 as seed ortholog is 100%.
Bootstrap support for Q4UIK9 as seed ortholog is 99%.

Group of orthologs #18. Best score 740 bits
Score difference with first non-orthologous sequence - P.jiroveci:221 T.annulata:86

L0PAJ7              	100.00%		Q4UHH1              	100.00%
Bootstrap support for L0PAJ7 as seed ortholog is 100%.
Bootstrap support for Q4UHH1 as seed ortholog is 99%.

Group of orthologs #19. Best score 737 bits
Score difference with first non-orthologous sequence - P.jiroveci:737 T.annulata:249

L0PEW0              	100.00%		Q4UEM0              	100.00%
Bootstrap support for L0PEW0 as seed ortholog is 100%.
Bootstrap support for Q4UEM0 as seed ortholog is 99%.

Group of orthologs #20. Best score 723 bits
Score difference with first non-orthologous sequence - P.jiroveci:213 T.annulata:611

L0PDB3              	100.00%		Q4U8V3              	100.00%
Bootstrap support for L0PDB3 as seed ortholog is 99%.
Bootstrap support for Q4U8V3 as seed ortholog is 100%.

Group of orthologs #21. Best score 710 bits
Score difference with first non-orthologous sequence - P.jiroveci:230 T.annulata:194

L0PB13              	100.00%		Q4UC45              	100.00%
Bootstrap support for L0PB13 as seed ortholog is 99%.
Bootstrap support for Q4UC45 as seed ortholog is 99%.

Group of orthologs #22. Best score 704 bits
Score difference with first non-orthologous sequence - P.jiroveci:704 T.annulata:378

L0PBR4              	100.00%		Q4UEG7              	100.00%
Bootstrap support for L0PBR4 as seed ortholog is 100%.
Bootstrap support for Q4UEG7 as seed ortholog is 100%.

Group of orthologs #23. Best score 701 bits
Score difference with first non-orthologous sequence - P.jiroveci:255 T.annulata:701

L0P833              	100.00%		Q4UBG5              	100.00%
Bootstrap support for L0P833 as seed ortholog is 100%.
Bootstrap support for Q4UBG5 as seed ortholog is 100%.

Group of orthologs #24. Best score 681 bits
Score difference with first non-orthologous sequence - P.jiroveci:681 T.annulata:681

L0PH89              	100.00%		Q4U8X7              	100.00%
Bootstrap support for L0PH89 as seed ortholog is 100%.
Bootstrap support for Q4U8X7 as seed ortholog is 100%.

Group of orthologs #25. Best score 677 bits
Score difference with first non-orthologous sequence - P.jiroveci:677 T.annulata:677

L0PEL4              	100.00%		Q4UBI9              	100.00%
Bootstrap support for L0PEL4 as seed ortholog is 100%.
Bootstrap support for Q4UBI9 as seed ortholog is 100%.

Group of orthologs #26. Best score 669 bits
Score difference with first non-orthologous sequence - P.jiroveci:327 T.annulata:285

L0PCW9              	100.00%		Q4UEM8              	100.00%
Bootstrap support for L0PCW9 as seed ortholog is 99%.
Bootstrap support for Q4UEM8 as seed ortholog is 99%.

Group of orthologs #27. Best score 661 bits
Score difference with first non-orthologous sequence - P.jiroveci:548 T.annulata:661

L0P915              	100.00%		Q4U991              	100.00%
Bootstrap support for L0P915 as seed ortholog is 100%.
Bootstrap support for Q4U991 as seed ortholog is 100%.

Group of orthologs #28. Best score 659 bits
Score difference with first non-orthologous sequence - P.jiroveci:364 T.annulata:659

L0PBA5              	100.00%		Q4UHR5              	100.00%
Bootstrap support for L0PBA5 as seed ortholog is 100%.
Bootstrap support for Q4UHR5 as seed ortholog is 100%.

Group of orthologs #29. Best score 654 bits
Score difference with first non-orthologous sequence - P.jiroveci:654 T.annulata:287

L0P9P7              	100.00%		Q4U9X6              	100.00%
Bootstrap support for L0P9P7 as seed ortholog is 100%.
Bootstrap support for Q4U9X6 as seed ortholog is 99%.

Group of orthologs #30. Best score 643 bits
Score difference with first non-orthologous sequence - P.jiroveci:643 T.annulata:351

L0PBE4              	100.00%		Q4UAD2              	100.00%
Bootstrap support for L0PBE4 as seed ortholog is 100%.
Bootstrap support for Q4UAD2 as seed ortholog is 100%.

Group of orthologs #31. Best score 643 bits
Score difference with first non-orthologous sequence - P.jiroveci:218 T.annulata:304

L0PG21              	100.00%		Q4UIC8              	100.00%
Bootstrap support for L0PG21 as seed ortholog is 99%.
Bootstrap support for Q4UIC8 as seed ortholog is 100%.

Group of orthologs #32. Best score 636 bits
Score difference with first non-orthologous sequence - P.jiroveci:552 T.annulata:636

L0PCG8              	100.00%		Q4UAB5              	100.00%
Bootstrap support for L0PCG8 as seed ortholog is 100%.
Bootstrap support for Q4UAB5 as seed ortholog is 100%.

Group of orthologs #33. Best score 633 bits
Score difference with first non-orthologous sequence - P.jiroveci:589 T.annulata:546

L0PEP7              	100.00%		Q4UDN0              	100.00%
Bootstrap support for L0PEP7 as seed ortholog is 100%.
Bootstrap support for Q4UDN0 as seed ortholog is 100%.

Group of orthologs #34. Best score 630 bits
Score difference with first non-orthologous sequence - P.jiroveci:630 T.annulata:630

L0PBF5              	100.00%		Q4UBV3              	100.00%
Bootstrap support for L0PBF5 as seed ortholog is 100%.
Bootstrap support for Q4UBV3 as seed ortholog is 100%.

Group of orthologs #35. Best score 629 bits
Score difference with first non-orthologous sequence - P.jiroveci:378 T.annulata:163

L0PBP8              	100.00%		Q4UAY6              	100.00%
Bootstrap support for L0PBP8 as seed ortholog is 100%.
Bootstrap support for Q4UAY6 as seed ortholog is 99%.

Group of orthologs #36. Best score 613 bits
Score difference with first non-orthologous sequence - P.jiroveci:613 T.annulata:613

L0PCC4              	100.00%		Q4U9P2              	100.00%
Bootstrap support for L0PCC4 as seed ortholog is 100%.
Bootstrap support for Q4U9P2 as seed ortholog is 100%.

Group of orthologs #37. Best score 610 bits
Score difference with first non-orthologous sequence - P.jiroveci:610 T.annulata:440

L0PD55              	100.00%		Q4UGA8              	100.00%
Bootstrap support for L0PD55 as seed ortholog is 100%.
Bootstrap support for Q4UGA8 as seed ortholog is 100%.

Group of orthologs #38. Best score 605 bits
Score difference with first non-orthologous sequence - P.jiroveci:236 T.annulata:311

L0PA91              	100.00%		Q4UFN5              	100.00%
Bootstrap support for L0PA91 as seed ortholog is 100%.
Bootstrap support for Q4UFN5 as seed ortholog is 100%.

Group of orthologs #39. Best score 602 bits
Score difference with first non-orthologous sequence - P.jiroveci:394 T.annulata:384

L0P8E7              	100.00%		Q4U8M6              	100.00%
Bootstrap support for L0P8E7 as seed ortholog is 100%.
Bootstrap support for Q4U8M6 as seed ortholog is 100%.

Group of orthologs #40. Best score 600 bits
Score difference with first non-orthologous sequence - P.jiroveci:600 T.annulata:600

L0P9C7              	100.00%		Q4UAC3              	100.00%
Bootstrap support for L0P9C7 as seed ortholog is 100%.
Bootstrap support for Q4UAC3 as seed ortholog is 100%.

Group of orthologs #41. Best score 599 bits
Score difference with first non-orthologous sequence - P.jiroveci:599 T.annulata:599

L0P7X5              	100.00%		Q4UDK4              	100.00%
Bootstrap support for L0P7X5 as seed ortholog is 100%.
Bootstrap support for Q4UDK4 as seed ortholog is 100%.

Group of orthologs #42. Best score 599 bits
Score difference with first non-orthologous sequence - P.jiroveci:599 T.annulata:599

L0PAN4              	100.00%		Q4UHY6              	100.00%
Bootstrap support for L0PAN4 as seed ortholog is 100%.
Bootstrap support for Q4UHY6 as seed ortholog is 100%.

Group of orthologs #43. Best score 598 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 T.annulata:418

L0PB83              	100.00%		Q4UIX6              	100.00%
Bootstrap support for L0PB83 as seed ortholog is 99%.
Bootstrap support for Q4UIX6 as seed ortholog is 100%.

Group of orthologs #44. Best score 596 bits
Score difference with first non-orthologous sequence - P.jiroveci:226 T.annulata:596

L0P9U5              	100.00%		Q4UIF0              	100.00%
Bootstrap support for L0P9U5 as seed ortholog is 99%.
Bootstrap support for Q4UIF0 as seed ortholog is 100%.

Group of orthologs #45. Best score 588 bits
Score difference with first non-orthologous sequence - P.jiroveci:471 T.annulata:502

L0P8C8              	100.00%		Q4UH76              	100.00%
Bootstrap support for L0P8C8 as seed ortholog is 100%.
Bootstrap support for Q4UH76 as seed ortholog is 100%.

Group of orthologs #46. Best score 583 bits
Score difference with first non-orthologous sequence - P.jiroveci:583 T.annulata:583

L0PDQ4              	100.00%		Q4UIJ4              	100.00%
Bootstrap support for L0PDQ4 as seed ortholog is 100%.
Bootstrap support for Q4UIJ4 as seed ortholog is 100%.

Group of orthologs #47. Best score 576 bits
Score difference with first non-orthologous sequence - P.jiroveci:415 T.annulata:327

L0P853              	100.00%		Q4UEX3              	100.00%
L0P8M8              	57.24%		
Bootstrap support for L0P853 as seed ortholog is 100%.
Bootstrap support for Q4UEX3 as seed ortholog is 100%.

Group of orthologs #48. Best score 574 bits
Score difference with first non-orthologous sequence - P.jiroveci:574 T.annulata:391

L0PG45              	100.00%		Q4UCM0              	100.00%
Bootstrap support for L0PG45 as seed ortholog is 100%.
Bootstrap support for Q4UCM0 as seed ortholog is 100%.

Group of orthologs #49. Best score 574 bits
Score difference with first non-orthologous sequence - P.jiroveci:574 T.annulata:389

L0PGA5              	100.00%		Q4UDZ0              	100.00%
Bootstrap support for L0PGA5 as seed ortholog is 100%.
Bootstrap support for Q4UDZ0 as seed ortholog is 100%.

Group of orthologs #50. Best score 568 bits
Score difference with first non-orthologous sequence - P.jiroveci:568 T.annulata:408

L0PER6              	100.00%		Q4UB55              	100.00%
Bootstrap support for L0PER6 as seed ortholog is 100%.
Bootstrap support for Q4UB55 as seed ortholog is 100%.

Group of orthologs #51. Best score 567 bits
Score difference with first non-orthologous sequence - P.jiroveci:567 T.annulata:567

L0PFU4              	100.00%		Q4UDM6              	100.00%
Bootstrap support for L0PFU4 as seed ortholog is 100%.
Bootstrap support for Q4UDM6 as seed ortholog is 100%.

Group of orthologs #52. Best score 566 bits
Score difference with first non-orthologous sequence - P.jiroveci:566 T.annulata:406

L0PCK0              	100.00%		Q4UF46              	100.00%
L0P7U1              	99.28%		
Bootstrap support for L0PCK0 as seed ortholog is 100%.
Bootstrap support for Q4UF46 as seed ortholog is 100%.

Group of orthologs #53. Best score 564 bits
Score difference with first non-orthologous sequence - P.jiroveci:564 T.annulata:564

L0PAK7              	100.00%		Q4UGH0              	100.00%
L0P8F2              	68.47%		
Bootstrap support for L0PAK7 as seed ortholog is 100%.
Bootstrap support for Q4UGH0 as seed ortholog is 100%.

Group of orthologs #54. Best score 550 bits
Score difference with first non-orthologous sequence - P.jiroveci:550 T.annulata:192

L0PDM6              	100.00%		Q4UAL9              	100.00%
Bootstrap support for L0PDM6 as seed ortholog is 100%.
Bootstrap support for Q4UAL9 as seed ortholog is 99%.

Group of orthologs #55. Best score 549 bits
Score difference with first non-orthologous sequence - P.jiroveci:549 T.annulata:549

L0PGR4              	100.00%		Q4UCU9              	100.00%
L0PFQ2              	93.80%		
Bootstrap support for L0PGR4 as seed ortholog is 100%.
Bootstrap support for Q4UCU9 as seed ortholog is 100%.

Group of orthologs #56. Best score 546 bits
Score difference with first non-orthologous sequence - P.jiroveci:404 T.annulata:546

L0PBQ6              	100.00%		Q4UE11              	100.00%
Bootstrap support for L0PBQ6 as seed ortholog is 100%.
Bootstrap support for Q4UE11 as seed ortholog is 100%.

Group of orthologs #57. Best score 544 bits
Score difference with first non-orthologous sequence - P.jiroveci:544 T.annulata:336

L0P945              	100.00%		Q4UCP7              	100.00%
Bootstrap support for L0P945 as seed ortholog is 100%.
Bootstrap support for Q4UCP7 as seed ortholog is 100%.

Group of orthologs #58. Best score 539 bits
Score difference with first non-orthologous sequence - P.jiroveci:539 T.annulata:539

L0PB85              	100.00%		Q4UI59              	100.00%
Bootstrap support for L0PB85 as seed ortholog is 100%.
Bootstrap support for Q4UI59 as seed ortholog is 100%.

Group of orthologs #59. Best score 538 bits
Score difference with first non-orthologous sequence - P.jiroveci:154 T.annulata:538

L0PBH4              	100.00%		Q4UE52              	100.00%
Bootstrap support for L0PBH4 as seed ortholog is 100%.
Bootstrap support for Q4UE52 as seed ortholog is 100%.

Group of orthologs #60. Best score 533 bits
Score difference with first non-orthologous sequence - P.jiroveci:533 T.annulata:533

L0P8W6              	100.00%		Q4UEL2              	100.00%
Bootstrap support for L0P8W6 as seed ortholog is 100%.
Bootstrap support for Q4UEL2 as seed ortholog is 100%.

Group of orthologs #61. Best score 532 bits
Score difference with first non-orthologous sequence - P.jiroveci:336 T.annulata:272

L0PBL6              	100.00%		Q4UDH7              	100.00%
Bootstrap support for L0PBL6 as seed ortholog is 100%.
Bootstrap support for Q4UDH7 as seed ortholog is 99%.

Group of orthologs #62. Best score 530 bits
Score difference with first non-orthologous sequence - P.jiroveci:530 T.annulata:530

L0PBJ8              	100.00%		Q4U8H1              	100.00%
Bootstrap support for L0PBJ8 as seed ortholog is 100%.
Bootstrap support for Q4U8H1 as seed ortholog is 100%.

Group of orthologs #63. Best score 529 bits
Score difference with first non-orthologous sequence - P.jiroveci:529 T.annulata:529

L0P7L0              	100.00%		Q4UBP8              	100.00%
L0PCI7              	46.77%		
Bootstrap support for L0P7L0 as seed ortholog is 100%.
Bootstrap support for Q4UBP8 as seed ortholog is 100%.

Group of orthologs #64. Best score 526 bits
Score difference with first non-orthologous sequence - P.jiroveci:526 T.annulata:336

L0P976              	100.00%		Q4UAK0              	100.00%
Bootstrap support for L0P976 as seed ortholog is 100%.
Bootstrap support for Q4UAK0 as seed ortholog is 100%.

Group of orthologs #65. Best score 523 bits
Score difference with first non-orthologous sequence - P.jiroveci:523 T.annulata:523

L0PAC9              	100.00%		Q4UBV4              	100.00%
L0PG61              	6.86%		
Bootstrap support for L0PAC9 as seed ortholog is 100%.
Bootstrap support for Q4UBV4 as seed ortholog is 100%.

Group of orthologs #66. Best score 518 bits
Score difference with first non-orthologous sequence - P.jiroveci:456 T.annulata:518

L0P7V1              	100.00%		Q4UEH9              	100.00%
Bootstrap support for L0P7V1 as seed ortholog is 100%.
Bootstrap support for Q4UEH9 as seed ortholog is 100%.

Group of orthologs #67. Best score 515 bits
Score difference with first non-orthologous sequence - P.jiroveci:276 T.annulata:309

L0PGL8              	100.00%		Q4U9Q4              	100.00%
Bootstrap support for L0PGL8 as seed ortholog is 99%.
Bootstrap support for Q4U9Q4 as seed ortholog is 99%.

Group of orthologs #68. Best score 512 bits
Score difference with first non-orthologous sequence - P.jiroveci:512 T.annulata:512

L0PH85              	100.00%		Q4UIP5              	100.00%
Bootstrap support for L0PH85 as seed ortholog is 100%.
Bootstrap support for Q4UIP5 as seed ortholog is 100%.

Group of orthologs #69. Best score 511 bits
Score difference with first non-orthologous sequence - P.jiroveci:511 T.annulata:511

L0PA45              	100.00%		Q4UH14              	100.00%
Bootstrap support for L0PA45 as seed ortholog is 100%.
Bootstrap support for Q4UH14 as seed ortholog is 100%.

Group of orthologs #70. Best score 508 bits
Score difference with first non-orthologous sequence - P.jiroveci:508 T.annulata:292

L0PCT0              	100.00%		Q4UA43              	100.00%
Bootstrap support for L0PCT0 as seed ortholog is 100%.
Bootstrap support for Q4UA43 as seed ortholog is 100%.

Group of orthologs #71. Best score 503 bits
Score difference with first non-orthologous sequence - P.jiroveci:503 T.annulata:503

L0PFF6              	100.00%		Q4UH39              	100.00%
Bootstrap support for L0PFF6 as seed ortholog is 100%.
Bootstrap support for Q4UH39 as seed ortholog is 100%.

Group of orthologs #72. Best score 502 bits
Score difference with first non-orthologous sequence - P.jiroveci:502 T.annulata:502

L0PCV7              	100.00%		Q4UDV2              	100.00%
Bootstrap support for L0PCV7 as seed ortholog is 100%.
Bootstrap support for Q4UDV2 as seed ortholog is 100%.

Group of orthologs #73. Best score 500 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 T.annulata:287

L0PE26              	100.00%		Q4UHZ3              	100.00%
Bootstrap support for L0PE26 as seed ortholog is 98%.
Bootstrap support for Q4UHZ3 as seed ortholog is 100%.

Group of orthologs #74. Best score 498 bits
Score difference with first non-orthologous sequence - P.jiroveci:498 T.annulata:498

L0PCR2              	100.00%		Q4UDL6              	100.00%
Bootstrap support for L0PCR2 as seed ortholog is 100%.
Bootstrap support for Q4UDL6 as seed ortholog is 100%.

Group of orthologs #75. Best score 495 bits
Score difference with first non-orthologous sequence - P.jiroveci:404 T.annulata:495

L0PAG9              	100.00%		Q4UFW2              	100.00%
Bootstrap support for L0PAG9 as seed ortholog is 100%.
Bootstrap support for Q4UFW2 as seed ortholog is 100%.

Group of orthologs #76. Best score 491 bits
Score difference with first non-orthologous sequence - P.jiroveci:491 T.annulata:491

L0PEK9              	100.00%		Q4UE63              	100.00%
Bootstrap support for L0PEK9 as seed ortholog is 100%.
Bootstrap support for Q4UE63 as seed ortholog is 100%.

Group of orthologs #77. Best score 490 bits
Score difference with first non-orthologous sequence - P.jiroveci:490 T.annulata:490

L0PGR1              	100.00%		Q4UI21              	100.00%
Bootstrap support for L0PGR1 as seed ortholog is 100%.
Bootstrap support for Q4UI21 as seed ortholog is 100%.

Group of orthologs #78. Best score 488 bits
Score difference with first non-orthologous sequence - P.jiroveci:488 T.annulata:331

L0PGS4              	100.00%		Q4UFR9              	100.00%
Bootstrap support for L0PGS4 as seed ortholog is 100%.
Bootstrap support for Q4UFR9 as seed ortholog is 100%.

Group of orthologs #79. Best score 482 bits
Score difference with first non-orthologous sequence - P.jiroveci:482 T.annulata:482

L0PC65              	100.00%		Q4UFH6              	100.00%
Bootstrap support for L0PC65 as seed ortholog is 100%.
Bootstrap support for Q4UFH6 as seed ortholog is 100%.

Group of orthologs #80. Best score 482 bits
Score difference with first non-orthologous sequence - P.jiroveci:482 T.annulata:186

L0PF72              	100.00%		Q4UDK3              	100.00%
Bootstrap support for L0PF72 as seed ortholog is 100%.
Bootstrap support for Q4UDK3 as seed ortholog is 99%.

Group of orthologs #81. Best score 480 bits
Score difference with first non-orthologous sequence - P.jiroveci:326 T.annulata:260

L0P7V6              	100.00%		Q4UDI3              	100.00%
Bootstrap support for L0P7V6 as seed ortholog is 100%.
Bootstrap support for Q4UDI3 as seed ortholog is 100%.

Group of orthologs #82. Best score 480 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 T.annulata:305

L0PFG7              	100.00%		Q4UC52              	100.00%
Bootstrap support for L0PFG7 as seed ortholog is 100%.
Bootstrap support for Q4UC52 as seed ortholog is 100%.

Group of orthologs #83. Best score 478 bits
Score difference with first non-orthologous sequence - P.jiroveci:342 T.annulata:166

L0PDY0              	100.00%		Q4UBV5              	100.00%
Bootstrap support for L0PDY0 as seed ortholog is 100%.
Bootstrap support for Q4UBV5 as seed ortholog is 99%.

Group of orthologs #84. Best score 477 bits
Score difference with first non-orthologous sequence - P.jiroveci:415 T.annulata:477

L0PBF3              	100.00%		Q4U9I1              	100.00%
Bootstrap support for L0PBF3 as seed ortholog is 100%.
Bootstrap support for Q4U9I1 as seed ortholog is 100%.

Group of orthologs #85. Best score 475 bits
Score difference with first non-orthologous sequence - P.jiroveci:303 T.annulata:248

L0PC64              	100.00%		Q4UHV5              	100.00%
Bootstrap support for L0PC64 as seed ortholog is 100%.
Bootstrap support for Q4UHV5 as seed ortholog is 100%.

Group of orthologs #86. Best score 470 bits
Score difference with first non-orthologous sequence - P.jiroveci:470 T.annulata:470

L0P7V0              	100.00%		Q4UGX0              	100.00%
Bootstrap support for L0P7V0 as seed ortholog is 100%.
Bootstrap support for Q4UGX0 as seed ortholog is 100%.

Group of orthologs #87. Best score 462 bits
Score difference with first non-orthologous sequence - P.jiroveci:462 T.annulata:462

L0PBJ1              	100.00%		Q4UJ48              	100.00%
Bootstrap support for L0PBJ1 as seed ortholog is 100%.
Bootstrap support for Q4UJ48 as seed ortholog is 100%.

Group of orthologs #88. Best score 461 bits
Score difference with first non-orthologous sequence - P.jiroveci:461 T.annulata:461

L0P710              	100.00%		Q4UDL9              	100.00%
Bootstrap support for L0P710 as seed ortholog is 100%.
Bootstrap support for Q4UDL9 as seed ortholog is 100%.

Group of orthologs #89. Best score 458 bits
Score difference with first non-orthologous sequence - P.jiroveci:458 T.annulata:458

L0PCP1              	100.00%		Q4UAG1              	100.00%
Bootstrap support for L0PCP1 as seed ortholog is 100%.
Bootstrap support for Q4UAG1 as seed ortholog is 100%.

Group of orthologs #90. Best score 456 bits
Score difference with first non-orthologous sequence - P.jiroveci:316 T.annulata:327

L0PE30              	100.00%		Q4U925              	100.00%
Bootstrap support for L0PE30 as seed ortholog is 100%.
Bootstrap support for Q4U925 as seed ortholog is 100%.

Group of orthologs #91. Best score 448 bits
Score difference with first non-orthologous sequence - P.jiroveci:149 T.annulata:448

L0PCK5              	100.00%		Q4UDA7              	100.00%
L0PGY9              	14.38%		
Bootstrap support for L0PCK5 as seed ortholog is 99%.
Bootstrap support for Q4UDA7 as seed ortholog is 100%.

Group of orthologs #92. Best score 448 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 T.annulata:448

L0PFW2              	100.00%		Q4UDB0              	100.00%
Bootstrap support for L0PFW2 as seed ortholog is 93%.
Bootstrap support for Q4UDB0 as seed ortholog is 100%.

Group of orthologs #93. Best score 446 bits
Score difference with first non-orthologous sequence - P.jiroveci:446 T.annulata:446

L0PA62              	100.00%		Q4UEN3              	100.00%
Bootstrap support for L0PA62 as seed ortholog is 100%.
Bootstrap support for Q4UEN3 as seed ortholog is 100%.

Group of orthologs #94. Best score 445 bits
Score difference with first non-orthologous sequence - P.jiroveci:445 T.annulata:445

L0PDC9              	100.00%		Q4UGW6              	100.00%
Bootstrap support for L0PDC9 as seed ortholog is 100%.
Bootstrap support for Q4UGW6 as seed ortholog is 100%.

Group of orthologs #95. Best score 443 bits
Score difference with first non-orthologous sequence - P.jiroveci:443 T.annulata:443

L0PDK6              	100.00%		Q4U9Z4              	100.00%
Bootstrap support for L0PDK6 as seed ortholog is 100%.
Bootstrap support for Q4U9Z4 as seed ortholog is 100%.

Group of orthologs #96. Best score 440 bits
Score difference with first non-orthologous sequence - P.jiroveci:112 T.annulata:440

L0P890              	100.00%		Q4UCC5              	100.00%
Bootstrap support for L0P890 as seed ortholog is 99%.
Bootstrap support for Q4UCC5 as seed ortholog is 100%.

Group of orthologs #97. Best score 438 bits
Score difference with first non-orthologous sequence - P.jiroveci:438 T.annulata:438

L0PCX1              	100.00%		Q4UGW7              	100.00%
Bootstrap support for L0PCX1 as seed ortholog is 100%.
Bootstrap support for Q4UGW7 as seed ortholog is 100%.

Group of orthologs #98. Best score 434 bits
Score difference with first non-orthologous sequence - P.jiroveci:434 T.annulata:434

L0PG32              	100.00%		Q4UHR0              	100.00%
Bootstrap support for L0PG32 as seed ortholog is 100%.
Bootstrap support for Q4UHR0 as seed ortholog is 100%.

Group of orthologs #99. Best score 432 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 T.annulata:432

L0P7D9              	100.00%		Q4UFJ2              	100.00%
Bootstrap support for L0P7D9 as seed ortholog is 99%.
Bootstrap support for Q4UFJ2 as seed ortholog is 100%.

Group of orthologs #100. Best score 431 bits
Score difference with first non-orthologous sequence - P.jiroveci:300 T.annulata:431

L0PDG5              	100.00%		Q4U918              	100.00%
Bootstrap support for L0PDG5 as seed ortholog is 100%.
Bootstrap support for Q4U918 as seed ortholog is 100%.

Group of orthologs #101. Best score 428 bits
Score difference with first non-orthologous sequence - P.jiroveci:357 T.annulata:428

L0PBW1              	100.00%		Q4U8E7              	100.00%
Bootstrap support for L0PBW1 as seed ortholog is 100%.
Bootstrap support for Q4U8E7 as seed ortholog is 100%.

Group of orthologs #102. Best score 428 bits
Score difference with first non-orthologous sequence - P.jiroveci:428 T.annulata:428

L0P7N3              	100.00%		Q4UCL4              	100.00%
Bootstrap support for L0P7N3 as seed ortholog is 100%.
Bootstrap support for Q4UCL4 as seed ortholog is 100%.

Group of orthologs #103. Best score 425 bits
Score difference with first non-orthologous sequence - P.jiroveci:425 T.annulata:425

L0P9G2              	100.00%		Q4UB84              	100.00%
Bootstrap support for L0P9G2 as seed ortholog is 100%.
Bootstrap support for Q4UB84 as seed ortholog is 100%.

Group of orthologs #104. Best score 425 bits
Score difference with first non-orthologous sequence - P.jiroveci:425 T.annulata:425

L0PC37              	100.00%		Q4UH40              	100.00%
Bootstrap support for L0PC37 as seed ortholog is 100%.
Bootstrap support for Q4UH40 as seed ortholog is 100%.

Group of orthologs #105. Best score 422 bits
Score difference with first non-orthologous sequence - P.jiroveci:282 T.annulata:343

L0P7R1              	100.00%		Q4UBU0              	100.00%
Bootstrap support for L0P7R1 as seed ortholog is 100%.
Bootstrap support for Q4UBU0 as seed ortholog is 100%.

Group of orthologs #106. Best score 422 bits
Score difference with first non-orthologous sequence - P.jiroveci:422 T.annulata:422

L0P9S1              	100.00%		Q4UB62              	100.00%
Bootstrap support for L0P9S1 as seed ortholog is 100%.
Bootstrap support for Q4UB62 as seed ortholog is 100%.

Group of orthologs #107. Best score 418 bits
Score difference with first non-orthologous sequence - P.jiroveci:418 T.annulata:418

L0PB35              	100.00%		Q4UGR9              	100.00%
Bootstrap support for L0PB35 as seed ortholog is 100%.
Bootstrap support for Q4UGR9 as seed ortholog is 100%.

Group of orthologs #108. Best score 409 bits
Score difference with first non-orthologous sequence - P.jiroveci:409 T.annulata:289

L0P9I8              	100.00%		Q4UE05              	100.00%
Bootstrap support for L0P9I8 as seed ortholog is 100%.
Bootstrap support for Q4UE05 as seed ortholog is 100%.

Group of orthologs #109. Best score 408 bits
Score difference with first non-orthologous sequence - P.jiroveci:408 T.annulata:408

L0PFN9              	100.00%		Q4UI41              	100.00%
L0PEF0              	9.63%		
Bootstrap support for L0PFN9 as seed ortholog is 100%.
Bootstrap support for Q4UI41 as seed ortholog is 100%.

Group of orthologs #110. Best score 406 bits
Score difference with first non-orthologous sequence - P.jiroveci:406 T.annulata:352

L0PB50              	100.00%		Q4UBJ1              	100.00%
Bootstrap support for L0PB50 as seed ortholog is 100%.
Bootstrap support for Q4UBJ1 as seed ortholog is 100%.

Group of orthologs #111. Best score 405 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 T.annulata:296

L0P7N1              	100.00%		Q4U9F7              	100.00%
Bootstrap support for L0P7N1 as seed ortholog is 99%.
Bootstrap support for Q4U9F7 as seed ortholog is 100%.

Group of orthologs #112. Best score 405 bits
Score difference with first non-orthologous sequence - P.jiroveci:405 T.annulata:263

L0P8N1              	100.00%		Q4UGI2              	100.00%
Bootstrap support for L0P8N1 as seed ortholog is 100%.
Bootstrap support for Q4UGI2 as seed ortholog is 100%.

Group of orthologs #113. Best score 404 bits
Score difference with first non-orthologous sequence - P.jiroveci:135 T.annulata:268

L0PA75              	100.00%		Q4UHP8              	100.00%
Bootstrap support for L0PA75 as seed ortholog is 99%.
Bootstrap support for Q4UHP8 as seed ortholog is 100%.

Group of orthologs #114. Best score 397 bits
Score difference with first non-orthologous sequence - P.jiroveci:315 T.annulata:397

L0PG55              	100.00%		Q4UB69              	100.00%
Bootstrap support for L0PG55 as seed ortholog is 100%.
Bootstrap support for Q4UB69 as seed ortholog is 100%.

Group of orthologs #115. Best score 395 bits
Score difference with first non-orthologous sequence - P.jiroveci:395 T.annulata:395

L0PBR9              	100.00%		Q4U8G4              	100.00%
Bootstrap support for L0PBR9 as seed ortholog is 100%.
Bootstrap support for Q4U8G4 as seed ortholog is 100%.

Group of orthologs #116. Best score 392 bits
Score difference with first non-orthologous sequence - P.jiroveci:392 T.annulata:392

L0PFQ5              	100.00%		Q4UBN2              	100.00%
Bootstrap support for L0PFQ5 as seed ortholog is 100%.
Bootstrap support for Q4UBN2 as seed ortholog is 100%.

Group of orthologs #117. Best score 389 bits
Score difference with first non-orthologous sequence - P.jiroveci:389 T.annulata:236

L0PG07              	100.00%		Q4UCK0              	100.00%
Bootstrap support for L0PG07 as seed ortholog is 100%.
Bootstrap support for Q4UCK0 as seed ortholog is 100%.

Group of orthologs #118. Best score 387 bits
Score difference with first non-orthologous sequence - P.jiroveci:387 T.annulata:51

L0PGU1              	100.00%		Q4UIV0              	100.00%
L0PH47              	5.23%		
Bootstrap support for L0PGU1 as seed ortholog is 100%.
Bootstrap support for Q4UIV0 as seed ortholog is 75%.

Group of orthologs #119. Best score 387 bits
Score difference with first non-orthologous sequence - P.jiroveci:325 T.annulata:315

L0P802              	100.00%		Q4UID9              	100.00%
Bootstrap support for L0P802 as seed ortholog is 100%.
Bootstrap support for Q4UID9 as seed ortholog is 100%.

Group of orthologs #120. Best score 387 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 T.annulata:148

L0PEK2              	100.00%		Q4UHN5              	100.00%
Bootstrap support for L0PEK2 as seed ortholog is 100%.
Bootstrap support for Q4UHN5 as seed ortholog is 66%.
Alternative seed ortholog is Q4UH89 (148 bits away from this cluster)

Group of orthologs #121. Best score 383 bits
Score difference with first non-orthologous sequence - P.jiroveci:383 T.annulata:383

L0PC54              	100.00%		Q4UDV5              	100.00%
Bootstrap support for L0PC54 as seed ortholog is 100%.
Bootstrap support for Q4UDV5 as seed ortholog is 100%.

Group of orthologs #122. Best score 380 bits
Score difference with first non-orthologous sequence - P.jiroveci:105 T.annulata:215

L0PDH7              	100.00%		Q4UA75              	100.00%
Bootstrap support for L0PDH7 as seed ortholog is 99%.
Bootstrap support for Q4UA75 as seed ortholog is 99%.

Group of orthologs #123. Best score 378 bits
Score difference with first non-orthologous sequence - P.jiroveci:378 T.annulata:378

L0P6X8              	100.00%		Q4UDH3              	100.00%
Bootstrap support for L0P6X8 as seed ortholog is 100%.
Bootstrap support for Q4UDH3 as seed ortholog is 100%.

Group of orthologs #124. Best score 378 bits
Score difference with first non-orthologous sequence - P.jiroveci:378 T.annulata:378

L0P7T0              	100.00%		Q4UDP8              	100.00%
Bootstrap support for L0P7T0 as seed ortholog is 100%.
Bootstrap support for Q4UDP8 as seed ortholog is 100%.

Group of orthologs #125. Best score 377 bits
Score difference with first non-orthologous sequence - P.jiroveci:208 T.annulata:377

L0PAU1              	100.00%		Q4UCK4              	100.00%
Bootstrap support for L0PAU1 as seed ortholog is 100%.
Bootstrap support for Q4UCK4 as seed ortholog is 100%.

Group of orthologs #126. Best score 376 bits
Score difference with first non-orthologous sequence - P.jiroveci:376 T.annulata:376

L0P9J7              	100.00%		Q4UDC3              	100.00%
Bootstrap support for L0P9J7 as seed ortholog is 100%.
Bootstrap support for Q4UDC3 as seed ortholog is 100%.

Group of orthologs #127. Best score 376 bits
Score difference with first non-orthologous sequence - P.jiroveci:376 T.annulata:280

L0PE96              	100.00%		Q4UCT3              	100.00%
Bootstrap support for L0PE96 as seed ortholog is 100%.
Bootstrap support for Q4UCT3 as seed ortholog is 100%.

Group of orthologs #128. Best score 374 bits
Score difference with first non-orthologous sequence - P.jiroveci:374 T.annulata:232

L0P7Y5              	100.00%		Q4UCK8              	100.00%
Bootstrap support for L0P7Y5 as seed ortholog is 100%.
Bootstrap support for Q4UCK8 as seed ortholog is 99%.

Group of orthologs #129. Best score 374 bits
Score difference with first non-orthologous sequence - P.jiroveci:374 T.annulata:272

L0P921              	100.00%		Q4UER5              	100.00%
Bootstrap support for L0P921 as seed ortholog is 100%.
Bootstrap support for Q4UER5 as seed ortholog is 100%.

Group of orthologs #130. Best score 374 bits
Score difference with first non-orthologous sequence - P.jiroveci:374 T.annulata:374

L0PCY5              	100.00%		Q4UG95              	100.00%
Bootstrap support for L0PCY5 as seed ortholog is 100%.
Bootstrap support for Q4UG95 as seed ortholog is 100%.

Group of orthologs #131. Best score 373 bits
Score difference with first non-orthologous sequence - P.jiroveci:373 T.annulata:373

L0PCB2              	100.00%		Q4UEY7              	100.00%
Bootstrap support for L0PCB2 as seed ortholog is 100%.
Bootstrap support for Q4UEY7 as seed ortholog is 100%.

Group of orthologs #132. Best score 371 bits
Score difference with first non-orthologous sequence - P.jiroveci:259 T.annulata:371

L0PCS3              	100.00%		Q4UF66              	100.00%
Bootstrap support for L0PCS3 as seed ortholog is 100%.
Bootstrap support for Q4UF66 as seed ortholog is 100%.

Group of orthologs #133. Best score 370 bits
Score difference with first non-orthologous sequence - P.jiroveci:370 T.annulata:188

L0PA85              	100.00%		Q4U9U2              	100.00%
Bootstrap support for L0PA85 as seed ortholog is 100%.
Bootstrap support for Q4U9U2 as seed ortholog is 99%.

Group of orthologs #134. Best score 370 bits
Score difference with first non-orthologous sequence - P.jiroveci:370 T.annulata:370

L0PAQ1              	100.00%		Q4UI52              	100.00%
Bootstrap support for L0PAQ1 as seed ortholog is 100%.
Bootstrap support for Q4UI52 as seed ortholog is 100%.

Group of orthologs #135. Best score 368 bits
Score difference with first non-orthologous sequence - P.jiroveci:368 T.annulata:368

L0P7P1              	100.00%		Q4UG78              	100.00%
Bootstrap support for L0P7P1 as seed ortholog is 100%.
Bootstrap support for Q4UG78 as seed ortholog is 100%.

Group of orthologs #136. Best score 368 bits
Score difference with first non-orthologous sequence - P.jiroveci:368 T.annulata:368

L0PC44              	100.00%		Q4UCZ7              	100.00%
Bootstrap support for L0PC44 as seed ortholog is 100%.
Bootstrap support for Q4UCZ7 as seed ortholog is 100%.

Group of orthologs #137. Best score 366 bits
Score difference with first non-orthologous sequence - P.jiroveci:366 T.annulata:366

L0PER3              	100.00%		Q4U964              	100.00%
Bootstrap support for L0PER3 as seed ortholog is 100%.
Bootstrap support for Q4U964 as seed ortholog is 100%.

Group of orthologs #138. Best score 366 bits
Score difference with first non-orthologous sequence - P.jiroveci:366 T.annulata:221

L0PBV5              	100.00%		Q4UH54              	100.00%
Bootstrap support for L0PBV5 as seed ortholog is 100%.
Bootstrap support for Q4UH54 as seed ortholog is 99%.

Group of orthologs #139. Best score 366 bits
Score difference with first non-orthologous sequence - P.jiroveci:366 T.annulata:253

L0PBG8              	100.00%		Q4UIN6              	100.00%
Bootstrap support for L0PBG8 as seed ortholog is 100%.
Bootstrap support for Q4UIN6 as seed ortholog is 100%.

Group of orthologs #140. Best score 366 bits
Score difference with first non-orthologous sequence - P.jiroveci:366 T.annulata:366

L0PID0              	100.00%		Q4UIP3              	100.00%
Bootstrap support for L0PID0 as seed ortholog is 100%.
Bootstrap support for Q4UIP3 as seed ortholog is 100%.

Group of orthologs #141. Best score 365 bits
Score difference with first non-orthologous sequence - P.jiroveci:365 T.annulata:365

L0P8P8              	100.00%		Q4UC94              	100.00%
Bootstrap support for L0P8P8 as seed ortholog is 100%.
Bootstrap support for Q4UC94 as seed ortholog is 100%.

Group of orthologs #142. Best score 365 bits
Score difference with first non-orthologous sequence - P.jiroveci:365 T.annulata:365

L0PDR3              	100.00%		Q4UF22              	100.00%
Bootstrap support for L0PDR3 as seed ortholog is 100%.
Bootstrap support for Q4UF22 as seed ortholog is 100%.

Group of orthologs #143. Best score 364 bits
Score difference with first non-orthologous sequence - P.jiroveci:364 T.annulata:364

L0PDU2              	100.00%		Q4UI04              	100.00%
Bootstrap support for L0PDU2 as seed ortholog is 100%.
Bootstrap support for Q4UI04 as seed ortholog is 100%.

Group of orthologs #144. Best score 363 bits
Score difference with first non-orthologous sequence - P.jiroveci:363 T.annulata:363

L0PG37              	100.00%		Q4UG43              	100.00%
Bootstrap support for L0PG37 as seed ortholog is 100%.
Bootstrap support for Q4UG43 as seed ortholog is 100%.

Group of orthologs #145. Best score 361 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 T.annulata:63

L0PHY6              	100.00%		Q4UHT6              	100.00%
Bootstrap support for L0PHY6 as seed ortholog is 100%.
Bootstrap support for Q4UHT6 as seed ortholog is 81%.

Group of orthologs #146. Best score 358 bits
Score difference with first non-orthologous sequence - P.jiroveci:358 T.annulata:358

L0PF23              	100.00%		Q4U8V5              	100.00%
Bootstrap support for L0PF23 as seed ortholog is 100%.
Bootstrap support for Q4U8V5 as seed ortholog is 100%.

Group of orthologs #147. Best score 357 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 T.annulata:224

L0P718              	100.00%		Q4UAK1              	100.00%
Bootstrap support for L0P718 as seed ortholog is 98%.
Bootstrap support for Q4UAK1 as seed ortholog is 99%.

Group of orthologs #148. Best score 356 bits
Score difference with first non-orthologous sequence - P.jiroveci:356 T.annulata:356

L0P7Z6              	100.00%		Q4UIR6              	100.00%
Bootstrap support for L0P7Z6 as seed ortholog is 100%.
Bootstrap support for Q4UIR6 as seed ortholog is 100%.

Group of orthologs #149. Best score 355 bits
Score difference with first non-orthologous sequence - P.jiroveci:43 T.annulata:203

L0P9A8              	100.00%		Q4UEG2              	100.00%
L0PHB9              	100.00%		Q4UF89              	100.00%
Bootstrap support for L0P9A8 as seed ortholog is 88%.
Bootstrap support for L0PHB9 as seed ortholog is 87%.
Bootstrap support for Q4UEG2 as seed ortholog is 100%.
Bootstrap support for Q4UF89 as seed ortholog is 100%.

Group of orthologs #150. Best score 353 bits
Score difference with first non-orthologous sequence - P.jiroveci:248 T.annulata:196

L0PFE7              	100.00%		Q4UGP2              	100.00%
Bootstrap support for L0PFE7 as seed ortholog is 100%.
Bootstrap support for Q4UGP2 as seed ortholog is 100%.

Group of orthologs #151. Best score 352 bits
Score difference with first non-orthologous sequence - P.jiroveci:294 T.annulata:352

L0P7M4              	100.00%		Q4U9M4              	100.00%
L0PH62              	59.67%		
Bootstrap support for L0P7M4 as seed ortholog is 100%.
Bootstrap support for Q4U9M4 as seed ortholog is 100%.

Group of orthologs #152. Best score 347 bits
Score difference with first non-orthologous sequence - P.jiroveci:36 T.annulata:129

L0PAY3              	100.00%		Q26671              	100.00%
Bootstrap support for L0PAY3 as seed ortholog is 86%.
Bootstrap support for Q26671 as seed ortholog is 99%.

Group of orthologs #153. Best score 346 bits
Score difference with first non-orthologous sequence - P.jiroveci:346 T.annulata:346

L0PC79              	100.00%		Q4U8W2              	100.00%
Bootstrap support for L0PC79 as seed ortholog is 100%.
Bootstrap support for Q4U8W2 as seed ortholog is 100%.

Group of orthologs #154. Best score 345 bits
Score difference with first non-orthologous sequence - P.jiroveci:345 T.annulata:345

L0PCN1              	100.00%		Q4UDQ1              	100.00%
Bootstrap support for L0PCN1 as seed ortholog is 100%.
Bootstrap support for Q4UDQ1 as seed ortholog is 100%.

Group of orthologs #155. Best score 344 bits
Score difference with first non-orthologous sequence - P.jiroveci:344 T.annulata:344

L0PAL8              	100.00%		Q4UBI5              	100.00%
Bootstrap support for L0PAL8 as seed ortholog is 100%.
Bootstrap support for Q4UBI5 as seed ortholog is 100%.

Group of orthologs #156. Best score 343 bits
Score difference with first non-orthologous sequence - P.jiroveci:343 T.annulata:113

L0PAR0              	100.00%		Q4UCK3              	100.00%
Bootstrap support for L0PAR0 as seed ortholog is 100%.
Bootstrap support for Q4UCK3 as seed ortholog is 98%.

Group of orthologs #157. Best score 342 bits
Score difference with first non-orthologous sequence - P.jiroveci:342 T.annulata:342

L0P8R6              	100.00%		Q4UB92              	100.00%
Bootstrap support for L0P8R6 as seed ortholog is 100%.
Bootstrap support for Q4UB92 as seed ortholog is 100%.

Group of orthologs #158. Best score 340 bits
Score difference with first non-orthologous sequence - P.jiroveci:340 T.annulata:340

L0PCR5              	100.00%		Q4UDC2              	100.00%
L0P9C2              	58.71%		
Bootstrap support for L0PCR5 as seed ortholog is 100%.
Bootstrap support for Q4UDC2 as seed ortholog is 100%.

Group of orthologs #159. Best score 336 bits
Score difference with first non-orthologous sequence - P.jiroveci:336 T.annulata:336

L0PGA8              	100.00%		Q4U924              	100.00%
Bootstrap support for L0PGA8 as seed ortholog is 100%.
Bootstrap support for Q4U924 as seed ortholog is 100%.

Group of orthologs #160. Best score 336 bits
Score difference with first non-orthologous sequence - P.jiroveci:336 T.annulata:336

L0PG27              	100.00%		Q4UCM8              	100.00%
Bootstrap support for L0PG27 as seed ortholog is 100%.
Bootstrap support for Q4UCM8 as seed ortholog is 100%.

Group of orthologs #161. Best score 334 bits
Score difference with first non-orthologous sequence - P.jiroveci:179 T.annulata:66

L0PEM1              	100.00%		Q4U8S0              	100.00%
Bootstrap support for L0PEM1 as seed ortholog is 99%.
Bootstrap support for Q4U8S0 as seed ortholog is 95%.

Group of orthologs #162. Best score 333 bits
Score difference with first non-orthologous sequence - P.jiroveci:333 T.annulata:333

L0PBA8              	100.00%		Q4UGL8              	100.00%
Bootstrap support for L0PBA8 as seed ortholog is 100%.
Bootstrap support for Q4UGL8 as seed ortholog is 100%.

Group of orthologs #163. Best score 331 bits
Score difference with first non-orthologous sequence - P.jiroveci:331 T.annulata:331

L0PC99              	100.00%		Q4UH10              	100.00%
Bootstrap support for L0PC99 as seed ortholog is 100%.
Bootstrap support for Q4UH10 as seed ortholog is 100%.

Group of orthologs #164. Best score 329 bits
Score difference with first non-orthologous sequence - P.jiroveci:329 T.annulata:156

L0PE19              	100.00%		Q4UC08              	100.00%
Bootstrap support for L0PE19 as seed ortholog is 100%.
Bootstrap support for Q4UC08 as seed ortholog is 99%.

Group of orthologs #165. Best score 329 bits
Score difference with first non-orthologous sequence - P.jiroveci:329 T.annulata:329

L0PGU0              	100.00%		Q4UBZ8              	100.00%
Bootstrap support for L0PGU0 as seed ortholog is 100%.
Bootstrap support for Q4UBZ8 as seed ortholog is 100%.

Group of orthologs #166. Best score 324 bits
Score difference with first non-orthologous sequence - P.jiroveci:324 T.annulata:324

L0PD31              	100.00%		Q4UAM8              	100.00%
Bootstrap support for L0PD31 as seed ortholog is 100%.
Bootstrap support for Q4UAM8 as seed ortholog is 100%.

Group of orthologs #167. Best score 323 bits
Score difference with first non-orthologous sequence - P.jiroveci:138 T.annulata:323

L0PEA7              	100.00%		Q4UFS6              	100.00%
Bootstrap support for L0PEA7 as seed ortholog is 99%.
Bootstrap support for Q4UFS6 as seed ortholog is 100%.

Group of orthologs #168. Best score 319 bits
Score difference with first non-orthologous sequence - P.jiroveci:319 T.annulata:319

L0PE98              	100.00%		Q4UG00              	100.00%
Bootstrap support for L0PE98 as seed ortholog is 100%.
Bootstrap support for Q4UG00 as seed ortholog is 100%.

Group of orthologs #169. Best score 318 bits
Score difference with first non-orthologous sequence - P.jiroveci:318 T.annulata:318

L0PED9              	100.00%		Q4UE24              	100.00%
Bootstrap support for L0PED9 as seed ortholog is 100%.
Bootstrap support for Q4UE24 as seed ortholog is 100%.

Group of orthologs #170. Best score 316 bits
Score difference with first non-orthologous sequence - P.jiroveci:167 T.annulata:237

L0PAL3              	100.00%		Q4U943              	100.00%
Bootstrap support for L0PAL3 as seed ortholog is 99%.
Bootstrap support for Q4U943 as seed ortholog is 100%.

Group of orthologs #171. Best score 314 bits
Score difference with first non-orthologous sequence - P.jiroveci:314 T.annulata:314

L0PET9              	100.00%		Q4UF80              	100.00%
Bootstrap support for L0PET9 as seed ortholog is 100%.
Bootstrap support for Q4UF80 as seed ortholog is 100%.

Group of orthologs #172. Best score 312 bits
Score difference with first non-orthologous sequence - P.jiroveci:312 T.annulata:312

L0PDM3              	100.00%		Q4UC05              	100.00%
Bootstrap support for L0PDM3 as seed ortholog is 100%.
Bootstrap support for Q4UC05 as seed ortholog is 100%.

Group of orthologs #173. Best score 310 bits
Score difference with first non-orthologous sequence - P.jiroveci:310 T.annulata:310

L0PFQ8              	100.00%		Q4U8Q0              	100.00%
Bootstrap support for L0PFQ8 as seed ortholog is 100%.
Bootstrap support for Q4U8Q0 as seed ortholog is 100%.

Group of orthologs #174. Best score 309 bits
Score difference with first non-orthologous sequence - P.jiroveci:309 T.annulata:309

L0PB24              	100.00%		Q4UDF2              	100.00%
Bootstrap support for L0PB24 as seed ortholog is 100%.
Bootstrap support for Q4UDF2 as seed ortholog is 100%.

Group of orthologs #175. Best score 309 bits
Score difference with first non-orthologous sequence - P.jiroveci:112 T.annulata:138

L0PGJ9              	100.00%		Q4UHP2              	100.00%
Bootstrap support for L0PGJ9 as seed ortholog is 98%.
Bootstrap support for Q4UHP2 as seed ortholog is 99%.

Group of orthologs #176. Best score 308 bits
Score difference with first non-orthologous sequence - P.jiroveci:308 T.annulata:308

L0PA65              	100.00%		Q4U9G5              	100.00%
Bootstrap support for L0PA65 as seed ortholog is 100%.
Bootstrap support for Q4U9G5 as seed ortholog is 100%.

Group of orthologs #177. Best score 308 bits
Score difference with first non-orthologous sequence - P.jiroveci:308 T.annulata:308

L0P861              	100.00%		Q4UGD7              	100.00%
Bootstrap support for L0P861 as seed ortholog is 100%.
Bootstrap support for Q4UGD7 as seed ortholog is 100%.

Group of orthologs #178. Best score 308 bits
Score difference with first non-orthologous sequence - P.jiroveci:308 T.annulata:308

L0PGF5              	100.00%		Q4UEG6              	100.00%
Bootstrap support for L0PGF5 as seed ortholog is 100%.
Bootstrap support for Q4UEG6 as seed ortholog is 100%.

Group of orthologs #179. Best score 307 bits
Score difference with first non-orthologous sequence - P.jiroveci:307 T.annulata:307

L0P6R7              	100.00%		Q4U8V4              	100.00%
Bootstrap support for L0P6R7 as seed ortholog is 100%.
Bootstrap support for Q4U8V4 as seed ortholog is 100%.

Group of orthologs #180. Best score 303 bits
Score difference with first non-orthologous sequence - P.jiroveci:303 T.annulata:303

L0P8M6              	100.00%		Q4UA11              	100.00%
Bootstrap support for L0P8M6 as seed ortholog is 100%.
Bootstrap support for Q4UA11 as seed ortholog is 100%.

Group of orthologs #181. Best score 302 bits
Score difference with first non-orthologous sequence - P.jiroveci:142 T.annulata:177

L0PC17              	100.00%		Q4UGK1              	100.00%
L0PD22              	54.13%		
Bootstrap support for L0PC17 as seed ortholog is 99%.
Bootstrap support for Q4UGK1 as seed ortholog is 99%.

Group of orthologs #182. Best score 302 bits
Score difference with first non-orthologous sequence - P.jiroveci:302 T.annulata:302

L0PDI6              	100.00%		Q4UG32              	100.00%
Bootstrap support for L0PDI6 as seed ortholog is 100%.
Bootstrap support for Q4UG32 as seed ortholog is 100%.

Group of orthologs #183. Best score 302 bits
Score difference with first non-orthologous sequence - P.jiroveci:163 T.annulata:302

L0PDG3              	100.00%		Q4UGM1              	100.00%
Bootstrap support for L0PDG3 as seed ortholog is 99%.
Bootstrap support for Q4UGM1 as seed ortholog is 100%.

Group of orthologs #184. Best score 301 bits
Score difference with first non-orthologous sequence - P.jiroveci:301 T.annulata:301

L0PA42              	100.00%		Q4UDE7              	100.00%
Bootstrap support for L0PA42 as seed ortholog is 100%.
Bootstrap support for Q4UDE7 as seed ortholog is 100%.

Group of orthologs #185. Best score 301 bits
Score difference with first non-orthologous sequence - P.jiroveci:301 T.annulata:145

L0PEE3              	100.00%		Q4U977              	100.00%
Bootstrap support for L0PEE3 as seed ortholog is 100%.
Bootstrap support for Q4U977 as seed ortholog is 99%.

Group of orthologs #186. Best score 301 bits
Score difference with first non-orthologous sequence - P.jiroveci:301 T.annulata:301

L0PFY1              	100.00%		Q4UAQ0              	100.00%
Bootstrap support for L0PFY1 as seed ortholog is 100%.
Bootstrap support for Q4UAQ0 as seed ortholog is 100%.

Group of orthologs #187. Best score 299 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 T.annulata:19

L0PAY5              	100.00%		Q4UE33              	100.00%
Bootstrap support for L0PAY5 as seed ortholog is 99%.
Bootstrap support for Q4UE33 as seed ortholog is 69%.
Alternative seed ortholog is Q4UF83 (19 bits away from this cluster)

Group of orthologs #188. Best score 299 bits
Score difference with first non-orthologous sequence - P.jiroveci:215 T.annulata:299

L0PBY2              	100.00%		Q4UGA3              	100.00%
Bootstrap support for L0PBY2 as seed ortholog is 99%.
Bootstrap support for Q4UGA3 as seed ortholog is 100%.

Group of orthologs #189. Best score 297 bits
Score difference with first non-orthologous sequence - P.jiroveci:297 T.annulata:297

L0PD02              	100.00%		Q4UGF6              	100.00%
Bootstrap support for L0PD02 as seed ortholog is 100%.
Bootstrap support for Q4UGF6 as seed ortholog is 100%.

Group of orthologs #190. Best score 296 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 T.annulata:94

L0PA26              	100.00%		Q4U9C6              	100.00%
Bootstrap support for L0PA26 as seed ortholog is 85%.
Bootstrap support for Q4U9C6 as seed ortholog is 99%.

Group of orthologs #191. Best score 296 bits
Score difference with first non-orthologous sequence - P.jiroveci:296 T.annulata:296

L0PAG0              	100.00%		Q4UDF6              	100.00%
Bootstrap support for L0PAG0 as seed ortholog is 100%.
Bootstrap support for Q4UDF6 as seed ortholog is 100%.

Group of orthologs #192. Best score 295 bits
Score difference with first non-orthologous sequence - P.jiroveci:295 T.annulata:295

L0PA13              	100.00%		Q4U9G9              	100.00%
Bootstrap support for L0PA13 as seed ortholog is 100%.
Bootstrap support for Q4U9G9 as seed ortholog is 100%.

Group of orthologs #193. Best score 295 bits
Score difference with first non-orthologous sequence - P.jiroveci:233 T.annulata:114

L0PC30              	100.00%		Q4UFA0              	100.00%
Bootstrap support for L0PC30 as seed ortholog is 100%.
Bootstrap support for Q4UFA0 as seed ortholog is 98%.

Group of orthologs #194. Best score 294 bits
Score difference with first non-orthologous sequence - P.jiroveci:294 T.annulata:87

L0P6W8              	100.00%		Q4UCN5              	100.00%
L0PH46              	100.00%		
Bootstrap support for L0P6W8 as seed ortholog is 100%.
Bootstrap support for L0PH46 as seed ortholog is 100%.
Bootstrap support for Q4UCN5 as seed ortholog is 97%.

Group of orthologs #195. Best score 293 bits
Score difference with first non-orthologous sequence - P.jiroveci:228 T.annulata:249

L0P9F6              	100.00%		Q4UDK1              	100.00%
Bootstrap support for L0P9F6 as seed ortholog is 100%.
Bootstrap support for Q4UDK1 as seed ortholog is 100%.

Group of orthologs #196. Best score 293 bits
Score difference with first non-orthologous sequence - P.jiroveci:293 T.annulata:293

L0PFI9              	100.00%		Q4UGH6              	100.00%
Bootstrap support for L0PFI9 as seed ortholog is 100%.
Bootstrap support for Q4UGH6 as seed ortholog is 100%.

Group of orthologs #197. Best score 291 bits
Score difference with first non-orthologous sequence - P.jiroveci:291 T.annulata:291

L0PEZ3              	100.00%		Q4UHT9              	100.00%
Bootstrap support for L0PEZ3 as seed ortholog is 100%.
Bootstrap support for Q4UHT9 as seed ortholog is 100%.

Group of orthologs #198. Best score 289 bits
Score difference with first non-orthologous sequence - P.jiroveci:289 T.annulata:289

L0PD03              	100.00%		Q4UC35              	100.00%
Bootstrap support for L0PD03 as seed ortholog is 100%.
Bootstrap support for Q4UC35 as seed ortholog is 100%.

Group of orthologs #199. Best score 289 bits
Score difference with first non-orthologous sequence - P.jiroveci:289 T.annulata:289

L0PFI2              	100.00%		Q4UI42              	100.00%
Bootstrap support for L0PFI2 as seed ortholog is 100%.
Bootstrap support for Q4UI42 as seed ortholog is 100%.

Group of orthologs #200. Best score 285 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 T.annulata:230

L0P8C2              	100.00%		Q4UA22              	100.00%
Bootstrap support for L0P8C2 as seed ortholog is 99%.
Bootstrap support for Q4UA22 as seed ortholog is 100%.

Group of orthologs #201. Best score 284 bits
Score difference with first non-orthologous sequence - P.jiroveci:284 T.annulata:284

L0PA93              	100.00%		Q4UDW3              	100.00%
                    	       		Q4UDW1              	38.98%
Bootstrap support for L0PA93 as seed ortholog is 100%.
Bootstrap support for Q4UDW3 as seed ortholog is 100%.

Group of orthologs #202. Best score 284 bits
Score difference with first non-orthologous sequence - P.jiroveci:284 T.annulata:284

L0P773              	100.00%		Q4UHP5              	100.00%
Bootstrap support for L0P773 as seed ortholog is 100%.
Bootstrap support for Q4UHP5 as seed ortholog is 100%.

Group of orthologs #203. Best score 283 bits
Score difference with first non-orthologous sequence - P.jiroveci:283 T.annulata:283

L0PBE9              	100.00%		Q4UEL5              	100.00%
Bootstrap support for L0PBE9 as seed ortholog is 100%.
Bootstrap support for Q4UEL5 as seed ortholog is 100%.

Group of orthologs #204. Best score 280 bits
Score difference with first non-orthologous sequence - P.jiroveci:280 T.annulata:31

L0PE41              	100.00%		Q4UBD0              	100.00%
Bootstrap support for L0PE41 as seed ortholog is 100%.
Bootstrap support for Q4UBD0 as seed ortholog is 41%.
Alternative seed ortholog is Q4U8R0 (31 bits away from this cluster)

Group of orthologs #205. Best score 280 bits
Score difference with first non-orthologous sequence - P.jiroveci:280 T.annulata:280

L0P8Z3              	100.00%		Q4UI16              	100.00%
Bootstrap support for L0P8Z3 as seed ortholog is 100%.
Bootstrap support for Q4UI16 as seed ortholog is 100%.

Group of orthologs #206. Best score 278 bits
Score difference with first non-orthologous sequence - P.jiroveci:278 T.annulata:278

L0PCG4              	100.00%		Q4U904              	100.00%
Bootstrap support for L0PCG4 as seed ortholog is 100%.
Bootstrap support for Q4U904 as seed ortholog is 100%.

Group of orthologs #207. Best score 278 bits
Score difference with first non-orthologous sequence - P.jiroveci:278 T.annulata:278

L0PF49              	100.00%		Q4U8T4              	100.00%
Bootstrap support for L0PF49 as seed ortholog is 100%.
Bootstrap support for Q4U8T4 as seed ortholog is 100%.

Group of orthologs #208. Best score 277 bits
Score difference with first non-orthologous sequence - P.jiroveci:277 T.annulata:277

L0P9U3              	100.00%		Q4UA40              	100.00%
Bootstrap support for L0P9U3 as seed ortholog is 100%.
Bootstrap support for Q4UA40 as seed ortholog is 100%.

Group of orthologs #209. Best score 277 bits
Score difference with first non-orthologous sequence - P.jiroveci:211 T.annulata:216

L0PEF5              	100.00%		Q4UHU4              	100.00%
Bootstrap support for L0PEF5 as seed ortholog is 100%.
Bootstrap support for Q4UHU4 as seed ortholog is 100%.

Group of orthologs #210. Best score 277 bits
Score difference with first non-orthologous sequence - P.jiroveci:138 T.annulata:2

L0PIF0              	100.00%		Q4UIB4              	100.00%
Bootstrap support for L0PIF0 as seed ortholog is 98%.
Bootstrap support for Q4UIB4 as seed ortholog is 56%.
Alternative seed ortholog is Q4UC66 (2 bits away from this cluster)

Group of orthologs #211. Best score 275 bits
Score difference with first non-orthologous sequence - P.jiroveci:275 T.annulata:275

L0PDJ1              	100.00%		Q4UCR8              	100.00%
Bootstrap support for L0PDJ1 as seed ortholog is 100%.
Bootstrap support for Q4UCR8 as seed ortholog is 100%.

Group of orthologs #212. Best score 274 bits
Score difference with first non-orthologous sequence - P.jiroveci:274 T.annulata:274

L0PBN2              	100.00%		Q4U8K0              	100.00%
Bootstrap support for L0PBN2 as seed ortholog is 100%.
Bootstrap support for Q4U8K0 as seed ortholog is 100%.

Group of orthologs #213. Best score 274 bits
Score difference with first non-orthologous sequence - P.jiroveci:274 T.annulata:274

L0PFY3              	100.00%		Q4UHT8              	100.00%
Bootstrap support for L0PFY3 as seed ortholog is 100%.
Bootstrap support for Q4UHT8 as seed ortholog is 100%.

Group of orthologs #214. Best score 273 bits
Score difference with first non-orthologous sequence - P.jiroveci:273 T.annulata:273

L0PFI8              	100.00%		Q4UAU2              	100.00%
Bootstrap support for L0PFI8 as seed ortholog is 100%.
Bootstrap support for Q4UAU2 as seed ortholog is 100%.

Group of orthologs #215. Best score 272 bits
Score difference with first non-orthologous sequence - P.jiroveci:272 T.annulata:272

L0PG82              	100.00%		Q4U965              	100.00%
Bootstrap support for L0PG82 as seed ortholog is 100%.
Bootstrap support for Q4U965 as seed ortholog is 100%.

Group of orthologs #216. Best score 269 bits
Score difference with first non-orthologous sequence - P.jiroveci:269 T.annulata:269

L0PBT8              	100.00%		Q4UA58              	100.00%
Bootstrap support for L0PBT8 as seed ortholog is 100%.
Bootstrap support for Q4UA58 as seed ortholog is 100%.

Group of orthologs #217. Best score 264 bits
Score difference with first non-orthologous sequence - P.jiroveci:264 T.annulata:264

L0PDW0              	100.00%		Q4UE66              	100.00%
Bootstrap support for L0PDW0 as seed ortholog is 100%.
Bootstrap support for Q4UE66 as seed ortholog is 100%.

Group of orthologs #218. Best score 263 bits
Score difference with first non-orthologous sequence - P.jiroveci:263 T.annulata:263

L0P865              	100.00%		Q4UEV2              	100.00%
Bootstrap support for L0P865 as seed ortholog is 100%.
Bootstrap support for Q4UEV2 as seed ortholog is 100%.

Group of orthologs #219. Best score 261 bits
Score difference with first non-orthologous sequence - P.jiroveci:261 T.annulata:261

L0PIR9              	100.00%		Q4UA14              	100.00%
Bootstrap support for L0PIR9 as seed ortholog is 100%.
Bootstrap support for Q4UA14 as seed ortholog is 100%.

Group of orthologs #220. Best score 259 bits
Score difference with first non-orthologous sequence - P.jiroveci:259 T.annulata:69

L0P891              	100.00%		Q4U9T3              	100.00%
Bootstrap support for L0P891 as seed ortholog is 100%.
Bootstrap support for Q4U9T3 as seed ortholog is 97%.

Group of orthologs #221. Best score 259 bits
Score difference with first non-orthologous sequence - P.jiroveci:259 T.annulata:259

L0PC90              	100.00%		Q4UI09              	100.00%
Bootstrap support for L0PC90 as seed ortholog is 100%.
Bootstrap support for Q4UI09 as seed ortholog is 100%.

Group of orthologs #222. Best score 258 bits
Score difference with first non-orthologous sequence - P.jiroveci:258 T.annulata:258

L0PF30              	100.00%		Q4UJ08              	100.00%
Bootstrap support for L0PF30 as seed ortholog is 100%.
Bootstrap support for Q4UJ08 as seed ortholog is 100%.

Group of orthologs #223. Best score 257 bits
Score difference with first non-orthologous sequence - P.jiroveci:257 T.annulata:209

L0PI36              	100.00%		Q4UA55              	100.00%
Bootstrap support for L0PI36 as seed ortholog is 100%.
Bootstrap support for Q4UA55 as seed ortholog is 100%.

Group of orthologs #224. Best score 255 bits
Score difference with first non-orthologous sequence - P.jiroveci:255 T.annulata:186

L0PFY2              	100.00%		Q4UEL3              	100.00%
Bootstrap support for L0PFY2 as seed ortholog is 100%.
Bootstrap support for Q4UEL3 as seed ortholog is 99%.

Group of orthologs #225. Best score 253 bits
Score difference with first non-orthologous sequence - P.jiroveci:253 T.annulata:253

L0PGT9              	100.00%		Q4UA92              	100.00%
Bootstrap support for L0PGT9 as seed ortholog is 100%.
Bootstrap support for Q4UA92 as seed ortholog is 100%.

Group of orthologs #226. Best score 252 bits
Score difference with first non-orthologous sequence - P.jiroveci:252 T.annulata:252

L0P8G8              	100.00%		Q4U9I9              	100.00%
Bootstrap support for L0P8G8 as seed ortholog is 100%.
Bootstrap support for Q4U9I9 as seed ortholog is 100%.

Group of orthologs #227. Best score 252 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 T.annulata:18

L0PBI1              	100.00%		Q4UDU7              	100.00%
Bootstrap support for L0PBI1 as seed ortholog is 95%.
Bootstrap support for Q4UDU7 as seed ortholog is 61%.
Alternative seed ortholog is Q4U901 (18 bits away from this cluster)

Group of orthologs #228. Best score 252 bits
Score difference with first non-orthologous sequence - P.jiroveci:252 T.annulata:252

L0PI19              	100.00%		Q4U8H2              	100.00%
Bootstrap support for L0PI19 as seed ortholog is 100%.
Bootstrap support for Q4U8H2 as seed ortholog is 100%.

Group of orthologs #229. Best score 251 bits
Score difference with first non-orthologous sequence - P.jiroveci:251 T.annulata:251

L0P9P0              	100.00%		Q4UBH7              	100.00%
Bootstrap support for L0P9P0 as seed ortholog is 100%.
Bootstrap support for Q4UBH7 as seed ortholog is 100%.

Group of orthologs #230. Best score 250 bits
Score difference with first non-orthologous sequence - P.jiroveci:250 T.annulata:250

L0PF21              	100.00%		Q4UDB3              	100.00%
L0P6T3              	16.67%		
Bootstrap support for L0PF21 as seed ortholog is 100%.
Bootstrap support for Q4UDB3 as seed ortholog is 100%.

Group of orthologs #231. Best score 250 bits
Score difference with first non-orthologous sequence - P.jiroveci:168 T.annulata:250

L0PBY3              	100.00%		Q4UG25              	100.00%
Bootstrap support for L0PBY3 as seed ortholog is 100%.
Bootstrap support for Q4UG25 as seed ortholog is 100%.

Group of orthologs #232. Best score 249 bits
Score difference with first non-orthologous sequence - P.jiroveci:249 T.annulata:122

L0PAS3              	100.00%		Q4UG55              	100.00%
Bootstrap support for L0PAS3 as seed ortholog is 100%.
Bootstrap support for Q4UG55 as seed ortholog is 98%.

Group of orthologs #233. Best score 249 bits
Score difference with first non-orthologous sequence - P.jiroveci:249 T.annulata:249

L0PFF9              	100.00%		Q4UDK6              	100.00%
Bootstrap support for L0PFF9 as seed ortholog is 100%.
Bootstrap support for Q4UDK6 as seed ortholog is 100%.

Group of orthologs #234. Best score 248 bits
Score difference with first non-orthologous sequence - P.jiroveci:248 T.annulata:248

L0PB98              	100.00%		Q4UD01              	100.00%
Bootstrap support for L0PB98 as seed ortholog is 100%.
Bootstrap support for Q4UD01 as seed ortholog is 100%.

Group of orthologs #235. Best score 245 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 T.annulata:245

L0PGR0              	100.00%		Q4UG75              	100.00%
                    	       		Q4UH68              	25.95%
                    	       		Q4UDG8              	10.91%
Bootstrap support for L0PGR0 as seed ortholog is 100%.
Bootstrap support for Q4UG75 as seed ortholog is 100%.

Group of orthologs #236. Best score 245 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 T.annulata:245

L0PG48              	100.00%		Q4UBM4              	100.00%
Bootstrap support for L0PG48 as seed ortholog is 100%.
Bootstrap support for Q4UBM4 as seed ortholog is 100%.

Group of orthologs #237. Best score 245 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 T.annulata:245

L0PEV9              	100.00%		Q4UE34              	100.00%
Bootstrap support for L0PEV9 as seed ortholog is 100%.
Bootstrap support for Q4UE34 as seed ortholog is 100%.

Group of orthologs #238. Best score 244 bits
Score difference with first non-orthologous sequence - P.jiroveci:244 T.annulata:244

L0P9I4              	100.00%		Q4UA76              	100.00%
Bootstrap support for L0P9I4 as seed ortholog is 100%.
Bootstrap support for Q4UA76 as seed ortholog is 100%.

Group of orthologs #239. Best score 244 bits
Score difference with first non-orthologous sequence - P.jiroveci:244 T.annulata:244

L0PCK3              	100.00%		Q4U921              	100.00%
Bootstrap support for L0PCK3 as seed ortholog is 100%.
Bootstrap support for Q4U921 as seed ortholog is 100%.

Group of orthologs #240. Best score 243 bits
Score difference with first non-orthologous sequence - P.jiroveci:243 T.annulata:243

L0PHB7              	100.00%		Q4UGE1              	100.00%
Bootstrap support for L0PHB7 as seed ortholog is 100%.
Bootstrap support for Q4UGE1 as seed ortholog is 100%.

Group of orthologs #241. Best score 242 bits
Score difference with first non-orthologous sequence - P.jiroveci:242 T.annulata:242

L0PAM2              	100.00%		Q4UGT4              	100.00%
Bootstrap support for L0PAM2 as seed ortholog is 100%.
Bootstrap support for Q4UGT4 as seed ortholog is 100%.

Group of orthologs #242. Best score 241 bits
Score difference with first non-orthologous sequence - P.jiroveci:241 T.annulata:241

L0P9X7              	100.00%		Q4U8I0              	100.00%
Bootstrap support for L0P9X7 as seed ortholog is 100%.
Bootstrap support for Q4U8I0 as seed ortholog is 100%.

Group of orthologs #243. Best score 241 bits
Score difference with first non-orthologous sequence - P.jiroveci:241 T.annulata:241

L0P9S5              	100.00%		Q4UEW2              	100.00%
Bootstrap support for L0P9S5 as seed ortholog is 100%.
Bootstrap support for Q4UEW2 as seed ortholog is 100%.

Group of orthologs #244. Best score 240 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 T.annulata:199

L0PD17              	100.00%		Q4U9T7              	100.00%
Bootstrap support for L0PD17 as seed ortholog is 100%.
Bootstrap support for Q4U9T7 as seed ortholog is 100%.

Group of orthologs #245. Best score 238 bits
Score difference with first non-orthologous sequence - P.jiroveci:238 T.annulata:158

L0PCG0              	100.00%		Q4UB43              	100.00%
Bootstrap support for L0PCG0 as seed ortholog is 100%.
Bootstrap support for Q4UB43 as seed ortholog is 100%.

Group of orthologs #246. Best score 238 bits
Score difference with first non-orthologous sequence - P.jiroveci:238 T.annulata:238

L0PDL9              	100.00%		Q4UA69              	100.00%
Bootstrap support for L0PDL9 as seed ortholog is 100%.
Bootstrap support for Q4UA69 as seed ortholog is 100%.

Group of orthologs #247. Best score 238 bits
Score difference with first non-orthologous sequence - P.jiroveci:238 T.annulata:238

L0PGJ5              	100.00%		Q4UBT8              	100.00%
Bootstrap support for L0PGJ5 as seed ortholog is 100%.
Bootstrap support for Q4UBT8 as seed ortholog is 100%.

Group of orthologs #248. Best score 238 bits
Score difference with first non-orthologous sequence - P.jiroveci:238 T.annulata:163

L0PGH8              	100.00%		Q4UFJ8              	100.00%
Bootstrap support for L0PGH8 as seed ortholog is 100%.
Bootstrap support for Q4UFJ8 as seed ortholog is 99%.

Group of orthologs #249. Best score 237 bits
Score difference with first non-orthologous sequence - P.jiroveci:237 T.annulata:237

L0PFU1              	100.00%		Q4U8M0              	100.00%
Bootstrap support for L0PFU1 as seed ortholog is 100%.
Bootstrap support for Q4U8M0 as seed ortholog is 100%.

Group of orthologs #250. Best score 236 bits
Score difference with first non-orthologous sequence - P.jiroveci:151 T.annulata:150

L0P8I7              	100.00%		Q4UBB3              	100.00%
Bootstrap support for L0P8I7 as seed ortholog is 100%.
Bootstrap support for Q4UBB3 as seed ortholog is 100%.

Group of orthologs #251. Best score 235 bits
Score difference with first non-orthologous sequence - P.jiroveci:235 T.annulata:235

L0PBC5              	100.00%		Q4U9N0              	100.00%
Bootstrap support for L0PBC5 as seed ortholog is 100%.
Bootstrap support for Q4U9N0 as seed ortholog is 100%.

Group of orthologs #252. Best score 233 bits
Score difference with first non-orthologous sequence - P.jiroveci:233 T.annulata:233

L0P7L7              	100.00%		Q4UFD2              	100.00%
Bootstrap support for L0P7L7 as seed ortholog is 100%.
Bootstrap support for Q4UFD2 as seed ortholog is 100%.

Group of orthologs #253. Best score 233 bits
Score difference with first non-orthologous sequence - P.jiroveci:185 T.annulata:233

L0P9B8              	100.00%		Q4UF26              	100.00%
Bootstrap support for L0P9B8 as seed ortholog is 100%.
Bootstrap support for Q4UF26 as seed ortholog is 100%.

Group of orthologs #254. Best score 233 bits
Score difference with first non-orthologous sequence - P.jiroveci:233 T.annulata:233

L0PHG7              	100.00%		Q4UGN6              	100.00%
Bootstrap support for L0PHG7 as seed ortholog is 100%.
Bootstrap support for Q4UGN6 as seed ortholog is 100%.

Group of orthologs #255. Best score 232 bits
Score difference with first non-orthologous sequence - P.jiroveci:232 T.annulata:183

L0PFS8              	100.00%		Q4UHB7              	100.00%
Bootstrap support for L0PFS8 as seed ortholog is 100%.
Bootstrap support for Q4UHB7 as seed ortholog is 100%.

Group of orthologs #256. Best score 232 bits
Score difference with first non-orthologous sequence - P.jiroveci:232 T.annulata:232

L0PFC2              	100.00%		Q4UHY4              	100.00%
Bootstrap support for L0PFC2 as seed ortholog is 100%.
Bootstrap support for Q4UHY4 as seed ortholog is 100%.

Group of orthologs #257. Best score 230 bits
Score difference with first non-orthologous sequence - P.jiroveci:230 T.annulata:230

L0P8L5              	100.00%		Q4UG02              	100.00%
Bootstrap support for L0P8L5 as seed ortholog is 100%.
Bootstrap support for Q4UG02 as seed ortholog is 100%.

Group of orthologs #258. Best score 230 bits
Score difference with first non-orthologous sequence - P.jiroveci:230 T.annulata:230

L0PBI2              	100.00%		Q4UEM9              	100.00%
Bootstrap support for L0PBI2 as seed ortholog is 100%.
Bootstrap support for Q4UEM9 as seed ortholog is 100%.

Group of orthologs #259. Best score 229 bits
Score difference with first non-orthologous sequence - P.jiroveci:229 T.annulata:229

L0PAH9              	100.00%		Q4UET6              	100.00%
L0PAZ7              	43.90%		
Bootstrap support for L0PAH9 as seed ortholog is 100%.
Bootstrap support for Q4UET6 as seed ortholog is 100%.

Group of orthologs #260. Best score 229 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 T.annulata:229

L0PD82              	100.00%		Q4UEZ4              	100.00%
L0P6Q8              	26.38%		
Bootstrap support for L0PD82 as seed ortholog is 97%.
Bootstrap support for Q4UEZ4 as seed ortholog is 100%.

Group of orthologs #261. Best score 229 bits
Score difference with first non-orthologous sequence - P.jiroveci:145 T.annulata:95

L0P876              	100.00%		Q4UBZ3              	100.00%
Bootstrap support for L0P876 as seed ortholog is 100%.
Bootstrap support for Q4UBZ3 as seed ortholog is 99%.

Group of orthologs #262. Best score 229 bits
Score difference with first non-orthologous sequence - P.jiroveci:229 T.annulata:73

L0P8A6              	100.00%		Q4UDF8              	100.00%
Bootstrap support for L0P8A6 as seed ortholog is 100%.
Bootstrap support for Q4UDF8 as seed ortholog is 94%.

Group of orthologs #263. Best score 229 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 T.annulata:229

L0PCD8              	100.00%		Q4UEP5              	100.00%
Bootstrap support for L0PCD8 as seed ortholog is 83%.
Bootstrap support for Q4UEP5 as seed ortholog is 100%.

Group of orthologs #264. Best score 228 bits
Score difference with first non-orthologous sequence - P.jiroveci:228 T.annulata:228

L0PBQ9              	100.00%		Q4UIU4              	100.00%
Bootstrap support for L0PBQ9 as seed ortholog is 100%.
Bootstrap support for Q4UIU4 as seed ortholog is 100%.

Group of orthologs #265. Best score 228 bits
Score difference with first non-orthologous sequence - P.jiroveci:228 T.annulata:178

L0PCJ2              	100.00%		Q4UI67              	100.00%
Bootstrap support for L0PCJ2 as seed ortholog is 100%.
Bootstrap support for Q4UI67 as seed ortholog is 100%.

Group of orthologs #266. Best score 227 bits
Score difference with first non-orthologous sequence - P.jiroveci:227 T.annulata:168

L0PET2              	100.00%		Q4UIA0              	100.00%
L0PAE5              	85.94%		
Bootstrap support for L0PET2 as seed ortholog is 100%.
Bootstrap support for Q4UIA0 as seed ortholog is 100%.

Group of orthologs #267. Best score 227 bits
Score difference with first non-orthologous sequence - P.jiroveci:227 T.annulata:136

L0P7P4              	100.00%		Q4UIQ4              	100.00%
Bootstrap support for L0P7P4 as seed ortholog is 100%.
Bootstrap support for Q4UIQ4 as seed ortholog is 99%.

Group of orthologs #268. Best score 227 bits
Score difference with first non-orthologous sequence - P.jiroveci:227 T.annulata:227

L0PBL0              	100.00%		Q4UIZ1              	100.00%
Bootstrap support for L0PBL0 as seed ortholog is 100%.
Bootstrap support for Q4UIZ1 as seed ortholog is 100%.

Group of orthologs #269. Best score 225 bits
Score difference with first non-orthologous sequence - P.jiroveci:225 T.annulata:225

L0PAF9              	100.00%		Q4UAH0              	100.00%
Bootstrap support for L0PAF9 as seed ortholog is 100%.
Bootstrap support for Q4UAH0 as seed ortholog is 100%.

Group of orthologs #270. Best score 225 bits
Score difference with first non-orthologous sequence - P.jiroveci:225 T.annulata:225

L0P9R9              	100.00%		Q4UHM1              	100.00%
Bootstrap support for L0P9R9 as seed ortholog is 100%.
Bootstrap support for Q4UHM1 as seed ortholog is 100%.

Group of orthologs #271. Best score 225 bits
Score difference with first non-orthologous sequence - P.jiroveci:225 T.annulata:225

L0PHJ3              	100.00%		Q4UE79              	100.00%
Bootstrap support for L0PHJ3 as seed ortholog is 100%.
Bootstrap support for Q4UE79 as seed ortholog is 100%.

Group of orthologs #272. Best score 224 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 T.annulata:131

L0PG24              	100.00%		Q4UA44              	100.00%
Bootstrap support for L0PG24 as seed ortholog is 99%.
Bootstrap support for Q4UA44 as seed ortholog is 99%.

Group of orthologs #273. Best score 223 bits
Score difference with first non-orthologous sequence - P.jiroveci:20 T.annulata:127

L0PC59              	100.00%		Q4UDU9              	100.00%
Bootstrap support for L0PC59 as seed ortholog is 79%.
Bootstrap support for Q4UDU9 as seed ortholog is 100%.

Group of orthologs #274. Best score 223 bits
Score difference with first non-orthologous sequence - P.jiroveci:223 T.annulata:223

L0PHL1              	100.00%		Q4UB42              	100.00%
Bootstrap support for L0PHL1 as seed ortholog is 100%.
Bootstrap support for Q4UB42 as seed ortholog is 100%.

Group of orthologs #275. Best score 222 bits
Score difference with first non-orthologous sequence - P.jiroveci:222 T.annulata:222

L0PDI7              	100.00%		Q4UEZ1              	100.00%
Bootstrap support for L0PDI7 as seed ortholog is 100%.
Bootstrap support for Q4UEZ1 as seed ortholog is 100%.

Group of orthologs #276. Best score 222 bits
Score difference with first non-orthologous sequence - P.jiroveci:222 T.annulata:145

L0PCY0              	100.00%		Q4UFQ9              	100.00%
Bootstrap support for L0PCY0 as seed ortholog is 100%.
Bootstrap support for Q4UFQ9 as seed ortholog is 99%.

Group of orthologs #277. Best score 221 bits
Score difference with first non-orthologous sequence - P.jiroveci:221 T.annulata:221

L0PB03              	100.00%		Q4U8L9              	100.00%
Bootstrap support for L0PB03 as seed ortholog is 100%.
Bootstrap support for Q4U8L9 as seed ortholog is 100%.

Group of orthologs #278. Best score 220 bits
Score difference with first non-orthologous sequence - P.jiroveci:220 T.annulata:220

L0PF98              	100.00%		Q4UEA5              	100.00%
Bootstrap support for L0PF98 as seed ortholog is 100%.
Bootstrap support for Q4UEA5 as seed ortholog is 100%.

Group of orthologs #279. Best score 219 bits
Score difference with first non-orthologous sequence - P.jiroveci:219 T.annulata:219

L0PBN4              	100.00%		Q4UBH5              	100.00%
Bootstrap support for L0PBN4 as seed ortholog is 100%.
Bootstrap support for Q4UBH5 as seed ortholog is 100%.

Group of orthologs #280. Best score 218 bits
Score difference with first non-orthologous sequence - P.jiroveci:218 T.annulata:218

L0PF20              	100.00%		Q4UCX9              	100.00%
L0P917              	97.04%		
Bootstrap support for L0PF20 as seed ortholog is 100%.
Bootstrap support for Q4UCX9 as seed ortholog is 100%.

Group of orthologs #281. Best score 218 bits
Score difference with first non-orthologous sequence - P.jiroveci:218 T.annulata:218

L0PED5              	100.00%		Q4UFH5              	100.00%
Bootstrap support for L0PED5 as seed ortholog is 100%.
Bootstrap support for Q4UFH5 as seed ortholog is 100%.

Group of orthologs #282. Best score 216 bits
Score difference with first non-orthologous sequence - P.jiroveci:216 T.annulata:216

L0PIP5              	100.00%		Q4UGD4              	100.00%
Bootstrap support for L0PIP5 as seed ortholog is 100%.
Bootstrap support for Q4UGD4 as seed ortholog is 100%.

Group of orthologs #283. Best score 215 bits
Score difference with first non-orthologous sequence - P.jiroveci:215 T.annulata:215

L0PBD7              	100.00%		Q4UA87              	100.00%
Bootstrap support for L0PBD7 as seed ortholog is 100%.
Bootstrap support for Q4UA87 as seed ortholog is 100%.

Group of orthologs #284. Best score 214 bits
Score difference with first non-orthologous sequence - P.jiroveci:214 T.annulata:214

L0P8V0              	100.00%		Q4UBP2              	100.00%
Bootstrap support for L0P8V0 as seed ortholog is 100%.
Bootstrap support for Q4UBP2 as seed ortholog is 100%.

Group of orthologs #285. Best score 214 bits
Score difference with first non-orthologous sequence - P.jiroveci:132 T.annulata:214

L0PA00              	100.00%		Q4UFP0              	100.00%
Bootstrap support for L0PA00 as seed ortholog is 99%.
Bootstrap support for Q4UFP0 as seed ortholog is 100%.

Group of orthologs #286. Best score 212 bits
Score difference with first non-orthologous sequence - P.jiroveci:212 T.annulata:212

L0PF46              	100.00%		Q4UCY7              	100.00%
Bootstrap support for L0PF46 as seed ortholog is 100%.
Bootstrap support for Q4UCY7 as seed ortholog is 100%.

Group of orthologs #287. Best score 211 bits
Score difference with first non-orthologous sequence - P.jiroveci:211 T.annulata:211

L0PAN7              	100.00%		Q4U8T2              	100.00%
Bootstrap support for L0PAN7 as seed ortholog is 100%.
Bootstrap support for Q4U8T2 as seed ortholog is 100%.

Group of orthologs #288. Best score 211 bits
Score difference with first non-orthologous sequence - P.jiroveci:211 T.annulata:211

L0PE17              	100.00%		Q4UFQ8              	100.00%
Bootstrap support for L0PE17 as seed ortholog is 100%.
Bootstrap support for Q4UFQ8 as seed ortholog is 100%.

Group of orthologs #289. Best score 210 bits
Score difference with first non-orthologous sequence - P.jiroveci:210 T.annulata:210

L0PBT9              	100.00%		Q4UE93              	100.00%
L0P9Y0              	48.88%		
Bootstrap support for L0PBT9 as seed ortholog is 100%.
Bootstrap support for Q4UE93 as seed ortholog is 100%.

Group of orthologs #290. Best score 210 bits
Score difference with first non-orthologous sequence - P.jiroveci:210 T.annulata:210

L0PEZ0              	100.00%		Q4UI96              	100.00%
Bootstrap support for L0PEZ0 as seed ortholog is 100%.
Bootstrap support for Q4UI96 as seed ortholog is 100%.

Group of orthologs #291. Best score 209 bits
Score difference with first non-orthologous sequence - P.jiroveci:123 T.annulata:65

L0PB10              	100.00%		Q4UIK6              	100.00%
Bootstrap support for L0PB10 as seed ortholog is 99%.
Bootstrap support for Q4UIK6 as seed ortholog is 98%.

Group of orthologs #292. Best score 208 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 T.annulata:92

L0P9F9              	100.00%		Q4UBP1              	100.00%
Bootstrap support for L0P9F9 as seed ortholog is 100%.
Bootstrap support for Q4UBP1 as seed ortholog is 99%.

Group of orthologs #293. Best score 208 bits
Score difference with first non-orthologous sequence - P.jiroveci:208 T.annulata:208

L0PHK5              	100.00%		Q4U9E9              	100.00%
Bootstrap support for L0PHK5 as seed ortholog is 100%.
Bootstrap support for Q4U9E9 as seed ortholog is 100%.

Group of orthologs #294. Best score 207 bits
Score difference with first non-orthologous sequence - P.jiroveci:207 T.annulata:207

L0PE52              	100.00%		Q4UBG2              	100.00%
L0PIN5              	54.58%		
Bootstrap support for L0PE52 as seed ortholog is 100%.
Bootstrap support for Q4UBG2 as seed ortholog is 100%.

Group of orthologs #295. Best score 207 bits
Score difference with first non-orthologous sequence - P.jiroveci:207 T.annulata:207

L0P9I6              	100.00%		Q4UE35              	100.00%
Bootstrap support for L0P9I6 as seed ortholog is 100%.
Bootstrap support for Q4UE35 as seed ortholog is 100%.

Group of orthologs #296. Best score 207 bits
Score difference with first non-orthologous sequence - P.jiroveci:207 T.annulata:207

L0PEB2              	100.00%		Q4UA66              	100.00%
Bootstrap support for L0PEB2 as seed ortholog is 100%.
Bootstrap support for Q4UA66 as seed ortholog is 100%.

Group of orthologs #297. Best score 207 bits
Score difference with first non-orthologous sequence - P.jiroveci:207 T.annulata:98

L0PF73              	100.00%		Q4U9J9              	100.00%
Bootstrap support for L0PF73 as seed ortholog is 100%.
Bootstrap support for Q4U9J9 as seed ortholog is 99%.

Group of orthologs #298. Best score 206 bits
Score difference with first non-orthologous sequence - P.jiroveci:206 T.annulata:206

L0PGV8              	100.00%		Q4UEC8              	100.00%
Bootstrap support for L0PGV8 as seed ortholog is 100%.
Bootstrap support for Q4UEC8 as seed ortholog is 100%.

Group of orthologs #299. Best score 205 bits
Score difference with first non-orthologous sequence - P.jiroveci:205 T.annulata:205

L0P7H2              	100.00%		Q4UB33              	100.00%
Bootstrap support for L0P7H2 as seed ortholog is 100%.
Bootstrap support for Q4UB33 as seed ortholog is 100%.

Group of orthologs #300. Best score 205 bits
Score difference with first non-orthologous sequence - P.jiroveci:205 T.annulata:205

L0PE58              	100.00%		Q4UGT3              	100.00%
Bootstrap support for L0PE58 as seed ortholog is 100%.
Bootstrap support for Q4UGT3 as seed ortholog is 100%.

Group of orthologs #301. Best score 204 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 T.annulata:161

L0PA57              	100.00%		Q4UH32              	100.00%
Bootstrap support for L0PA57 as seed ortholog is 99%.
Bootstrap support for Q4UH32 as seed ortholog is 99%.

Group of orthologs #302. Best score 204 bits
Score difference with first non-orthologous sequence - P.jiroveci:204 T.annulata:204

L0PAR8              	100.00%		Q4UHD1              	100.00%
Bootstrap support for L0PAR8 as seed ortholog is 100%.
Bootstrap support for Q4UHD1 as seed ortholog is 100%.

Group of orthologs #303. Best score 203 bits
Score difference with first non-orthologous sequence - P.jiroveci:203 T.annulata:203

L0P8X1              	100.00%		Q4UC65              	100.00%
Bootstrap support for L0P8X1 as seed ortholog is 100%.
Bootstrap support for Q4UC65 as seed ortholog is 100%.

Group of orthologs #304. Best score 203 bits
Score difference with first non-orthologous sequence - P.jiroveci:203 T.annulata:203

L0PB66              	100.00%		Q4UDC9              	100.00%
Bootstrap support for L0PB66 as seed ortholog is 100%.
Bootstrap support for Q4UDC9 as seed ortholog is 100%.

Group of orthologs #305. Best score 203 bits
Score difference with first non-orthologous sequence - P.jiroveci:203 T.annulata:203

L0PDA9              	100.00%		Q4UGI9              	100.00%
Bootstrap support for L0PDA9 as seed ortholog is 100%.
Bootstrap support for Q4UGI9 as seed ortholog is 100%.

Group of orthologs #306. Best score 202 bits
Score difference with first non-orthologous sequence - P.jiroveci:202 T.annulata:202

L0PB54              	100.00%		Q4UAN7              	100.00%
Bootstrap support for L0PB54 as seed ortholog is 100%.
Bootstrap support for Q4UAN7 as seed ortholog is 100%.

Group of orthologs #307. Best score 202 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 T.annulata:202

L0PFY7              	100.00%		Q4UA19              	100.00%
Bootstrap support for L0PFY7 as seed ortholog is 99%.
Bootstrap support for Q4UA19 as seed ortholog is 100%.

Group of orthologs #308. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 T.annulata:130

L0PGD7              	100.00%		Q4U8M3              	100.00%
L0PGQ0              	67.09%		
Bootstrap support for L0PGD7 as seed ortholog is 100%.
Bootstrap support for Q4U8M3 as seed ortholog is 100%.

Group of orthologs #309. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 T.annulata:201

L0PC62              	100.00%		Q4U9R8              	100.00%
Bootstrap support for L0PC62 as seed ortholog is 100%.
Bootstrap support for Q4U9R8 as seed ortholog is 100%.

Group of orthologs #310. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 T.annulata:201

L0PAJ2              	100.00%		Q4UD36              	100.00%
Bootstrap support for L0PAJ2 as seed ortholog is 100%.
Bootstrap support for Q4UD36 as seed ortholog is 100%.

Group of orthologs #311. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 T.annulata:201

L0PFX1              	100.00%		Q4UBS4              	100.00%
Bootstrap support for L0PFX1 as seed ortholog is 100%.
Bootstrap support for Q4UBS4 as seed ortholog is 100%.

Group of orthologs #312. Best score 200 bits
Score difference with first non-orthologous sequence - P.jiroveci:200 T.annulata:125

L0PIJ3              	100.00%		Q4UB93              	100.00%
L0PEP1              	84.01%		
Bootstrap support for L0PIJ3 as seed ortholog is 100%.
Bootstrap support for Q4UB93 as seed ortholog is 95%.

Group of orthologs #313. Best score 200 bits
Score difference with first non-orthologous sequence - P.jiroveci:200 T.annulata:200

L0PFQ3              	100.00%		Q4UF43              	100.00%
Bootstrap support for L0PFQ3 as seed ortholog is 100%.
Bootstrap support for Q4UF43 as seed ortholog is 100%.

Group of orthologs #314. Best score 199 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 T.annulata:199

L0PD35              	100.00%		Q4UDS3              	100.00%
Bootstrap support for L0PD35 as seed ortholog is 100%.
Bootstrap support for Q4UDS3 as seed ortholog is 100%.

Group of orthologs #315. Best score 199 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 T.annulata:199

L0PBS5              	100.00%		Q4UH48              	100.00%
Bootstrap support for L0PBS5 as seed ortholog is 100%.
Bootstrap support for Q4UH48 as seed ortholog is 100%.

Group of orthologs #316. Best score 198 bits
Score difference with first non-orthologous sequence - P.jiroveci:198 T.annulata:198

L0PEN7              	100.00%		Q4UE72              	100.00%
Bootstrap support for L0PEN7 as seed ortholog is 100%.
Bootstrap support for Q4UE72 as seed ortholog is 100%.

Group of orthologs #317. Best score 198 bits
Score difference with first non-orthologous sequence - P.jiroveci:198 T.annulata:198

L0PA88              	100.00%		Q4UJ57              	100.00%
Bootstrap support for L0PA88 as seed ortholog is 100%.
Bootstrap support for Q4UJ57 as seed ortholog is 100%.

Group of orthologs #318. Best score 198 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 T.annulata:91

L0PGP6              	100.00%		Q4UFD3              	100.00%
Bootstrap support for L0PGP6 as seed ortholog is 100%.
Bootstrap support for Q4UFD3 as seed ortholog is 99%.

Group of orthologs #319. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:197 T.annulata:197

L0PBZ7              	100.00%		Q4UCH9              	100.00%
Bootstrap support for L0PBZ7 as seed ortholog is 100%.
Bootstrap support for Q4UCH9 as seed ortholog is 100%.

Group of orthologs #320. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:197 T.annulata:197

L0PFL8              	100.00%		Q4UB86              	100.00%
Bootstrap support for L0PFL8 as seed ortholog is 100%.
Bootstrap support for Q4UB86 as seed ortholog is 100%.

Group of orthologs #321. Best score 196 bits
Score difference with first non-orthologous sequence - P.jiroveci:196 T.annulata:196

L0PCQ7              	100.00%		Q4UAX3              	100.00%
Bootstrap support for L0PCQ7 as seed ortholog is 100%.
Bootstrap support for Q4UAX3 as seed ortholog is 100%.

Group of orthologs #322. Best score 196 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 T.annulata:196

L0PB12              	100.00%		Q4UCQ8              	100.00%
Bootstrap support for L0PB12 as seed ortholog is 98%.
Bootstrap support for Q4UCQ8 as seed ortholog is 100%.

Group of orthologs #323. Best score 195 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 T.annulata:195

L0PAE8              	100.00%		Q4UAN5              	100.00%
Bootstrap support for L0PAE8 as seed ortholog is 100%.
Bootstrap support for Q4UAN5 as seed ortholog is 100%.

Group of orthologs #324. Best score 195 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 T.annulata:195

L0P8G2              	100.00%		Q4UCT1              	100.00%
Bootstrap support for L0P8G2 as seed ortholog is 100%.
Bootstrap support for Q4UCT1 as seed ortholog is 100%.

Group of orthologs #325. Best score 195 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 T.annulata:195

L0PH55              	100.00%		Q4UAY2              	100.00%
Bootstrap support for L0PH55 as seed ortholog is 100%.
Bootstrap support for Q4UAY2 as seed ortholog is 100%.

Group of orthologs #326. Best score 194 bits
Score difference with first non-orthologous sequence - P.jiroveci:194 T.annulata:194

L0PFN4              	100.00%		Q4UIP2              	100.00%
Bootstrap support for L0PFN4 as seed ortholog is 100%.
Bootstrap support for Q4UIP2 as seed ortholog is 100%.

Group of orthologs #327. Best score 193 bits
Score difference with first non-orthologous sequence - P.jiroveci:193 T.annulata:193

L0PCR8              	100.00%		Q4UG63              	100.00%
L0PH75              	91.87%		
Bootstrap support for L0PCR8 as seed ortholog is 100%.
Bootstrap support for Q4UG63 as seed ortholog is 100%.

Group of orthologs #328. Best score 193 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 T.annulata:68

L0PG51              	100.00%		Q4UDF9              	100.00%
Bootstrap support for L0PG51 as seed ortholog is 90%.
Bootstrap support for Q4UDF9 as seed ortholog is 96%.

Group of orthologs #329. Best score 193 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 T.annulata:131

L0PFE3              	100.00%		Q4UGA0              	100.00%
Bootstrap support for L0PFE3 as seed ortholog is 93%.
Bootstrap support for Q4UGA0 as seed ortholog is 99%.

Group of orthologs #330. Best score 192 bits
Score difference with first non-orthologous sequence - P.jiroveci:192 T.annulata:192

L0PBZ6              	100.00%		Q4UA26              	100.00%
Bootstrap support for L0PBZ6 as seed ortholog is 100%.
Bootstrap support for Q4UA26 as seed ortholog is 100%.

Group of orthologs #331. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 T.annulata:191

L0P8K8              	100.00%		Q4U9U3              	100.00%
Bootstrap support for L0P8K8 as seed ortholog is 100%.
Bootstrap support for Q4U9U3 as seed ortholog is 100%.

Group of orthologs #332. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 T.annulata:191

L0P9C1              	100.00%		Q4UBJ6              	100.00%
Bootstrap support for L0P9C1 as seed ortholog is 100%.
Bootstrap support for Q4UBJ6 as seed ortholog is 100%.

Group of orthologs #333. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 T.annulata:191

L0PAC7              	100.00%		Q4UGS6              	100.00%
Bootstrap support for L0PAC7 as seed ortholog is 100%.
Bootstrap support for Q4UGS6 as seed ortholog is 100%.

Group of orthologs #334. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 T.annulata:191

L0PGY0              	100.00%		Q4UF75              	100.00%
Bootstrap support for L0PGY0 as seed ortholog is 100%.
Bootstrap support for Q4UF75 as seed ortholog is 100%.

Group of orthologs #335. Best score 190 bits
Score difference with first non-orthologous sequence - P.jiroveci:190 T.annulata:190

L0P7R5              	100.00%		Q4UDM1              	100.00%
Bootstrap support for L0P7R5 as seed ortholog is 100%.
Bootstrap support for Q4UDM1 as seed ortholog is 100%.

Group of orthologs #336. Best score 190 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 T.annulata:190

L0PBN1              	100.00%		Q4UC26              	100.00%
Bootstrap support for L0PBN1 as seed ortholog is 99%.
Bootstrap support for Q4UC26 as seed ortholog is 100%.

Group of orthologs #337. Best score 190 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 T.annulata:120

L0PCV1              	100.00%		Q4UGK9              	100.00%
Bootstrap support for L0PCV1 as seed ortholog is 93%.
Bootstrap support for Q4UGK9 as seed ortholog is 99%.

Group of orthologs #338. Best score 189 bits
Score difference with first non-orthologous sequence - P.jiroveci:189 T.annulata:189

L0PD18              	100.00%		Q4UI72              	100.00%
Bootstrap support for L0PD18 as seed ortholog is 100%.
Bootstrap support for Q4UI72 as seed ortholog is 100%.

Group of orthologs #339. Best score 188 bits
Score difference with first non-orthologous sequence - P.jiroveci:188 T.annulata:188

L0P9T2              	100.00%		Q4UHX5              	100.00%
Bootstrap support for L0P9T2 as seed ortholog is 100%.
Bootstrap support for Q4UHX5 as seed ortholog is 100%.

Group of orthologs #340. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:13 T.annulata:121

L0PDN2              	100.00%		Q4UIR7              	100.00%
                    	       		Q4UEA3              	14.42%
Bootstrap support for L0PDN2 as seed ortholog is 64%.
Alternative seed ortholog is L0PGT4 (13 bits away from this cluster)
Bootstrap support for Q4UIR7 as seed ortholog is 99%.

Group of orthologs #341. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 T.annulata:187

L0PG22              	100.00%		Q4UHG5              	100.00%
L0PB04              	78.30%		
Bootstrap support for L0PG22 as seed ortholog is 100%.
Bootstrap support for Q4UHG5 as seed ortholog is 100%.

Group of orthologs #342. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 T.annulata:187

L0PBX0              	100.00%		Q4UBC0              	100.00%
Bootstrap support for L0PBX0 as seed ortholog is 100%.
Bootstrap support for Q4UBC0 as seed ortholog is 100%.

Group of orthologs #343. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 T.annulata:187

L0PCU0              	100.00%		Q4UI79              	100.00%
Bootstrap support for L0PCU0 as seed ortholog is 100%.
Bootstrap support for Q4UI79 as seed ortholog is 100%.

Group of orthologs #344. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 T.annulata:117

L0PEM3              	100.00%		Q4U8S7              	100.00%
Bootstrap support for L0PEM3 as seed ortholog is 100%.
Bootstrap support for Q4U8S7 as seed ortholog is 99%.

Group of orthologs #345. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 T.annulata:51

L0PBM6              	100.00%		Q4UG97              	100.00%
Bootstrap support for L0PBM6 as seed ortholog is 84%.
Bootstrap support for Q4UG97 as seed ortholog is 85%.

Group of orthologs #346. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 T.annulata:186

L0PCA7              	100.00%		Q4UGI3              	100.00%
Bootstrap support for L0PCA7 as seed ortholog is 100%.
Bootstrap support for Q4UGI3 as seed ortholog is 100%.

Group of orthologs #347. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 T.annulata:124

L0PAW4              	100.00%		Q4UIU3              	100.00%
Bootstrap support for L0PAW4 as seed ortholog is 100%.
Bootstrap support for Q4UIU3 as seed ortholog is 99%.

Group of orthologs #348. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 T.annulata:186

L0PEG2              	100.00%		Q4UFQ3              	100.00%
Bootstrap support for L0PEG2 as seed ortholog is 100%.
Bootstrap support for Q4UFQ3 as seed ortholog is 100%.

Group of orthologs #349. Best score 185 bits
Score difference with first non-orthologous sequence - P.jiroveci:113 T.annulata:185

L0P6V9              	100.00%		Q4UII4              	100.00%
L0PBF0              	14.66%		
Bootstrap support for L0P6V9 as seed ortholog is 99%.
Bootstrap support for Q4UII4 as seed ortholog is 100%.

Group of orthologs #350. Best score 185 bits
Score difference with first non-orthologous sequence - P.jiroveci:185 T.annulata:185

L0PFM4              	100.00%		Q4UC44              	100.00%
Bootstrap support for L0PFM4 as seed ortholog is 100%.
Bootstrap support for Q4UC44 as seed ortholog is 100%.

Group of orthologs #351. Best score 185 bits
Score difference with first non-orthologous sequence - P.jiroveci:185 T.annulata:185

L0PFJ5              	100.00%		Q4UHZ6              	100.00%
Bootstrap support for L0PFJ5 as seed ortholog is 100%.
Bootstrap support for Q4UHZ6 as seed ortholog is 100%.

Group of orthologs #352. Best score 184 bits
Score difference with first non-orthologous sequence - P.jiroveci:132 T.annulata:184

L0P8I1              	100.00%		Q4UF18              	100.00%
Bootstrap support for L0P8I1 as seed ortholog is 99%.
Bootstrap support for Q4UF18 as seed ortholog is 100%.

Group of orthologs #353. Best score 184 bits
Score difference with first non-orthologous sequence - P.jiroveci:184 T.annulata:184

L0PGX9              	100.00%		Q4UAZ2              	100.00%
Bootstrap support for L0PGX9 as seed ortholog is 100%.
Bootstrap support for Q4UAZ2 as seed ortholog is 100%.

Group of orthologs #354. Best score 184 bits
Score difference with first non-orthologous sequence - P.jiroveci:184 T.annulata:184

L0PD68              	100.00%		Q4UF94              	100.00%
Bootstrap support for L0PD68 as seed ortholog is 100%.
Bootstrap support for Q4UF94 as seed ortholog is 100%.

Group of orthologs #355. Best score 184 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 T.annulata:23

L0PDB8              	100.00%		Q4UIU6              	100.00%
Bootstrap support for L0PDB8 as seed ortholog is 99%.
Bootstrap support for Q4UIU6 as seed ortholog is 74%.
Alternative seed ortholog is Q4UGI5 (23 bits away from this cluster)

Group of orthologs #356. Best score 183 bits
Score difference with first non-orthologous sequence - P.jiroveci:183 T.annulata:183

L0P9G9              	100.00%		Q4UBW3              	100.00%
Bootstrap support for L0P9G9 as seed ortholog is 100%.
Bootstrap support for Q4UBW3 as seed ortholog is 100%.

Group of orthologs #357. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:182 T.annulata:182

L0PB97              	100.00%		Q4U9J0              	100.00%
Bootstrap support for L0PB97 as seed ortholog is 100%.
Bootstrap support for Q4U9J0 as seed ortholog is 100%.

Group of orthologs #358. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 T.annulata:182

L0PFK0              	100.00%		Q4UB51              	100.00%
Bootstrap support for L0PFK0 as seed ortholog is 99%.
Bootstrap support for Q4UB51 as seed ortholog is 100%.

Group of orthologs #359. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:90

L0PFN2              	100.00%		Q4UF72              	100.00%
Bootstrap support for L0PFN2 as seed ortholog is 99%.
Bootstrap support for Q4UF72 as seed ortholog is 100%.

Group of orthologs #360. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:182 T.annulata:182

L0PG96              	100.00%		Q4UHU3              	100.00%
Bootstrap support for L0PG96 as seed ortholog is 100%.
Bootstrap support for Q4UHU3 as seed ortholog is 100%.

Group of orthologs #361. Best score 180 bits
Score difference with first non-orthologous sequence - P.jiroveci:180 T.annulata:180

L0PGI4              	100.00%		Q4U9I8              	100.00%
Bootstrap support for L0PGI4 as seed ortholog is 100%.
Bootstrap support for Q4U9I8 as seed ortholog is 100%.

Group of orthologs #362. Best score 180 bits
Score difference with first non-orthologous sequence - P.jiroveci:180 T.annulata:180

L0PC53              	100.00%		Q4UFS9              	100.00%
Bootstrap support for L0PC53 as seed ortholog is 100%.
Bootstrap support for Q4UFS9 as seed ortholog is 100%.

Group of orthologs #363. Best score 180 bits
Score difference with first non-orthologous sequence - P.jiroveci:180 T.annulata:180

L0PD41              	100.00%		Q4UGY7              	100.00%
Bootstrap support for L0PD41 as seed ortholog is 100%.
Bootstrap support for Q4UGY7 as seed ortholog is 100%.

Group of orthologs #364. Best score 179 bits
Score difference with first non-orthologous sequence - P.jiroveci:179 T.annulata:179

L0PFZ0              	100.00%		Q4U8J8              	100.00%
Bootstrap support for L0PFZ0 as seed ortholog is 100%.
Bootstrap support for Q4U8J8 as seed ortholog is 100%.

Group of orthologs #365. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:178 T.annulata:178

L0PD32              	100.00%		Q4U9D5              	100.00%
L0PD26              	95.33%		
Bootstrap support for L0PD32 as seed ortholog is 100%.
Bootstrap support for Q4U9D5 as seed ortholog is 100%.

Group of orthologs #366. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:178 T.annulata:178

L0PB94              	100.00%		Q4U9K4              	100.00%
Bootstrap support for L0PB94 as seed ortholog is 100%.
Bootstrap support for Q4U9K4 as seed ortholog is 100%.

Group of orthologs #367. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:127 T.annulata:121

L0PAL2              	100.00%		Q4UIT4              	100.00%
Bootstrap support for L0PAL2 as seed ortholog is 99%.
Bootstrap support for Q4UIT4 as seed ortholog is 99%.

Group of orthologs #368. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:30 T.annulata:17

L0PAQ7              	100.00%		Q4UI73              	100.00%
Bootstrap support for L0PAQ7 as seed ortholog is 81%.
Bootstrap support for Q4UI73 as seed ortholog is 73%.
Alternative seed ortholog is Q4UEU0 (17 bits away from this cluster)

Group of orthologs #369. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:176 T.annulata:176

L0PG08              	100.00%		Q4UDM3              	100.00%
Bootstrap support for L0PG08 as seed ortholog is 100%.
Bootstrap support for Q4UDM3 as seed ortholog is 100%.

Group of orthologs #370. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:176 T.annulata:176

L0PE77              	100.00%		Q4UHH2              	100.00%
Bootstrap support for L0PE77 as seed ortholog is 100%.
Bootstrap support for Q4UHH2 as seed ortholog is 100%.

Group of orthologs #371. Best score 174 bits
Score difference with first non-orthologous sequence - P.jiroveci:174 T.annulata:174

L0PAP1              	100.00%		Q4UBC4              	100.00%
Bootstrap support for L0PAP1 as seed ortholog is 100%.
Bootstrap support for Q4UBC4 as seed ortholog is 100%.

Group of orthologs #372. Best score 174 bits
Score difference with first non-orthologous sequence - P.jiroveci:174 T.annulata:174

L0PEX1              	100.00%		Q4UHG4              	100.00%
Bootstrap support for L0PEX1 as seed ortholog is 100%.
Bootstrap support for Q4UHG4 as seed ortholog is 100%.

Group of orthologs #373. Best score 173 bits
Score difference with first non-orthologous sequence - P.jiroveci:34 T.annulata:46

L0PCN5              	100.00%		Q4UIH6              	100.00%
L0P7B6              	92.93%		
Bootstrap support for L0PCN5 as seed ortholog is 76%.
Bootstrap support for Q4UIH6 as seed ortholog is 89%.

Group of orthologs #374. Best score 173 bits
Score difference with first non-orthologous sequence - P.jiroveci:173 T.annulata:173

L0PFC9              	100.00%		Q4UAU6              	100.00%
Bootstrap support for L0PFC9 as seed ortholog is 100%.
Bootstrap support for Q4UAU6 as seed ortholog is 100%.

Group of orthologs #375. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 T.annulata:172

L0P6P2              	100.00%		Q4U8R2              	100.00%
Bootstrap support for L0P6P2 as seed ortholog is 100%.
Bootstrap support for Q4U8R2 as seed ortholog is 100%.

Group of orthologs #376. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 T.annulata:172

L0PAU5              	100.00%		Q4UG80              	100.00%
Bootstrap support for L0PAU5 as seed ortholog is 100%.
Bootstrap support for Q4UG80 as seed ortholog is 100%.

Group of orthologs #377. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 T.annulata:172

L0PDV1              	100.00%		Q4UHR6              	100.00%
Bootstrap support for L0PDV1 as seed ortholog is 100%.
Bootstrap support for Q4UHR6 as seed ortholog is 100%.

Group of orthologs #378. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:171 T.annulata:171

L0P9C9              	100.00%		Q4UFQ6              	100.00%
Bootstrap support for L0P9C9 as seed ortholog is 100%.
Bootstrap support for Q4UFQ6 as seed ortholog is 100%.

Group of orthologs #379. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:12 T.annulata:65

L0PB67              	100.00%		Q4UF82              	100.00%
Bootstrap support for L0PB67 as seed ortholog is 56%.
Alternative seed ortholog is L0PEF1 (12 bits away from this cluster)
Bootstrap support for Q4UF82 as seed ortholog is 93%.

Group of orthologs #380. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:171 T.annulata:171

L0PA36              	100.00%		Q4UIG2              	100.00%
Bootstrap support for L0PA36 as seed ortholog is 100%.
Bootstrap support for Q4UIG2 as seed ortholog is 100%.

Group of orthologs #381. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:170 T.annulata:170

L0P8N3              	100.00%		Q4U9M7              	100.00%
Bootstrap support for L0P8N3 as seed ortholog is 100%.
Bootstrap support for Q4U9M7 as seed ortholog is 100%.

Group of orthologs #382. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:170 T.annulata:170

L0P905              	100.00%		Q4UCR3              	100.00%
Bootstrap support for L0P905 as seed ortholog is 100%.
Bootstrap support for Q4UCR3 as seed ortholog is 100%.

Group of orthologs #383. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:170 T.annulata:170

L0PAC1              	100.00%		Q4UFD7              	100.00%
Bootstrap support for L0PAC1 as seed ortholog is 100%.
Bootstrap support for Q4UFD7 as seed ortholog is 100%.

Group of orthologs #384. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:170 T.annulata:170

L0PDH0              	100.00%		Q4UGS7              	100.00%
Bootstrap support for L0PDH0 as seed ortholog is 100%.
Bootstrap support for Q4UGS7 as seed ortholog is 100%.

Group of orthologs #385. Best score 169 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 T.annulata:122

L0PCS6              	100.00%		Q4UAG3              	100.00%
Bootstrap support for L0PCS6 as seed ortholog is 94%.
Bootstrap support for Q4UAG3 as seed ortholog is 99%.

Group of orthologs #386. Best score 169 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 T.annulata:64

L0PAS2              	100.00%		Q4UH55              	100.00%
Bootstrap support for L0PAS2 as seed ortholog is 100%.
Bootstrap support for Q4UH55 as seed ortholog is 99%.

Group of orthologs #387. Best score 169 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 T.annulata:84

L0PGT3              	100.00%		Q4UCV6              	100.00%
Bootstrap support for L0PGT3 as seed ortholog is 98%.
Bootstrap support for Q4UCV6 as seed ortholog is 99%.

Group of orthologs #388. Best score 169 bits
Score difference with first non-orthologous sequence - P.jiroveci:169 T.annulata:169

L0PD65              	100.00%		Q4UI77              	100.00%
Bootstrap support for L0PD65 as seed ortholog is 100%.
Bootstrap support for Q4UI77 as seed ortholog is 100%.

Group of orthologs #389. Best score 168 bits
Score difference with first non-orthologous sequence - P.jiroveci:168 T.annulata:168

L0PCH0              	100.00%		Q4UG06              	100.00%
                    	       		Q4UG08              	93.67%
Bootstrap support for L0PCH0 as seed ortholog is 100%.
Bootstrap support for Q4UG06 as seed ortholog is 100%.

Group of orthologs #390. Best score 168 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 T.annulata:41

L0PAY4              	100.00%		Q4U9Y5              	100.00%
Bootstrap support for L0PAY4 as seed ortholog is 100%.
Bootstrap support for Q4U9Y5 as seed ortholog is 99%.

Group of orthologs #391. Best score 167 bits
Score difference with first non-orthologous sequence - P.jiroveci:167 T.annulata:69

L0PDT8              	100.00%		Q4UBT1              	100.00%
L0P9R2              	91.98%		
Bootstrap support for L0PDT8 as seed ortholog is 100%.
Bootstrap support for Q4UBT1 as seed ortholog is 98%.

Group of orthologs #392. Best score 167 bits
Score difference with first non-orthologous sequence - P.jiroveci:167 T.annulata:167

L0P9I0              	100.00%		Q4UDZ8              	100.00%
Bootstrap support for L0P9I0 as seed ortholog is 100%.
Bootstrap support for Q4UDZ8 as seed ortholog is 100%.

Group of orthologs #393. Best score 167 bits
Score difference with first non-orthologous sequence - P.jiroveci:167 T.annulata:167

L0PDT0              	100.00%		Q4UIE9              	100.00%
Bootstrap support for L0PDT0 as seed ortholog is 100%.
Bootstrap support for Q4UIE9 as seed ortholog is 100%.

Group of orthologs #394. Best score 165 bits
Score difference with first non-orthologous sequence - P.jiroveci:165 T.annulata:86

L0PB84              	100.00%		Q4U969              	100.00%
Bootstrap support for L0PB84 as seed ortholog is 100%.
Bootstrap support for Q4U969 as seed ortholog is 99%.

Group of orthologs #395. Best score 165 bits
Score difference with first non-orthologous sequence - P.jiroveci:165 T.annulata:165

L0P9G7              	100.00%		Q4UB70              	100.00%
Bootstrap support for L0P9G7 as seed ortholog is 100%.
Bootstrap support for Q4UB70 as seed ortholog is 100%.

Group of orthologs #396. Best score 164 bits
Score difference with first non-orthologous sequence - P.jiroveci:164 T.annulata:164

L0PCA8              	100.00%		Q4UE25              	100.00%
Bootstrap support for L0PCA8 as seed ortholog is 100%.
Bootstrap support for Q4UE25 as seed ortholog is 100%.

Group of orthologs #397. Best score 163 bits
Score difference with first non-orthologous sequence - P.jiroveci:163 T.annulata:163

L0PEC6              	100.00%		Q4UIZ5              	100.00%
Bootstrap support for L0PEC6 as seed ortholog is 100%.
Bootstrap support for Q4UIZ5 as seed ortholog is 100%.

Group of orthologs #398. Best score 163 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 T.annulata:163

L0PHK8              	100.00%		Q4UG91              	100.00%
Bootstrap support for L0PHK8 as seed ortholog is 99%.
Bootstrap support for Q4UG91 as seed ortholog is 100%.

Group of orthologs #399. Best score 162 bits
Score difference with first non-orthologous sequence - P.jiroveci:162 T.annulata:162

L0PAS8              	100.00%		Q4UFR7              	100.00%
Bootstrap support for L0PAS8 as seed ortholog is 100%.
Bootstrap support for Q4UFR7 as seed ortholog is 100%.

Group of orthologs #400. Best score 162 bits
Score difference with first non-orthologous sequence - P.jiroveci:162 T.annulata:162

L0PEX0              	100.00%		Q4UDM9              	100.00%
Bootstrap support for L0PEX0 as seed ortholog is 100%.
Bootstrap support for Q4UDM9 as seed ortholog is 100%.

Group of orthologs #401. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:161 T.annulata:161

L0P9I3              	100.00%		Q4UA18              	100.00%
Bootstrap support for L0P9I3 as seed ortholog is 100%.
Bootstrap support for Q4UA18 as seed ortholog is 100%.

Group of orthologs #402. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:161 T.annulata:161

L0P9Y2              	100.00%		Q4U9S6              	100.00%
Bootstrap support for L0P9Y2 as seed ortholog is 100%.
Bootstrap support for Q4U9S6 as seed ortholog is 100%.

Group of orthologs #403. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:161 T.annulata:30

L0PBS9              	100.00%		Q4UAP8              	100.00%
Bootstrap support for L0PBS9 as seed ortholog is 100%.
Bootstrap support for Q4UAP8 as seed ortholog is 77%.

Group of orthologs #404. Best score 160 bits
Score difference with first non-orthologous sequence - P.jiroveci:160 T.annulata:160

L0P9G1              	100.00%		Q4UCE5              	100.00%
Bootstrap support for L0P9G1 as seed ortholog is 100%.
Bootstrap support for Q4UCE5 as seed ortholog is 100%.

Group of orthologs #405. Best score 160 bits
Score difference with first non-orthologous sequence - P.jiroveci:160 T.annulata:160

L0P784              	100.00%		Q4UEB8              	100.00%
Bootstrap support for L0P784 as seed ortholog is 100%.
Bootstrap support for Q4UEB8 as seed ortholog is 100%.

Group of orthologs #406. Best score 160 bits
Score difference with first non-orthologous sequence - P.jiroveci:160 T.annulata:160

L0P9S7              	100.00%		Q4UEH2              	100.00%
Bootstrap support for L0P9S7 as seed ortholog is 100%.
Bootstrap support for Q4UEH2 as seed ortholog is 100%.

Group of orthologs #407. Best score 159 bits
Score difference with first non-orthologous sequence - P.jiroveci:159 T.annulata:159

L0P896              	100.00%		Q4U8E1              	100.00%
Bootstrap support for L0P896 as seed ortholog is 100%.
Bootstrap support for Q4U8E1 as seed ortholog is 100%.

Group of orthologs #408. Best score 159 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:159

L0P863              	100.00%		Q4UDS4              	100.00%
Bootstrap support for L0P863 as seed ortholog is 88%.
Bootstrap support for Q4UDS4 as seed ortholog is 100%.

Group of orthologs #409. Best score 159 bits
Score difference with first non-orthologous sequence - P.jiroveci:159 T.annulata:159

L0PDB7              	100.00%		Q4UI18              	100.00%
Bootstrap support for L0PDB7 as seed ortholog is 100%.
Bootstrap support for Q4UI18 as seed ortholog is 100%.

Group of orthologs #410. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 T.annulata:158

L0P958              	100.00%		Q4U8H7              	100.00%
Bootstrap support for L0P958 as seed ortholog is 100%.
Bootstrap support for Q4U8H7 as seed ortholog is 100%.

Group of orthologs #411. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 T.annulata:158

L0P8F0              	100.00%		Q4UF34              	100.00%
Bootstrap support for L0P8F0 as seed ortholog is 100%.
Bootstrap support for Q4UF34 as seed ortholog is 100%.

Group of orthologs #412. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 T.annulata:158

L0PB81              	100.00%		Q4UE19              	100.00%
Bootstrap support for L0PB81 as seed ortholog is 100%.
Bootstrap support for Q4UE19 as seed ortholog is 100%.

Group of orthologs #413. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 T.annulata:158

L0PDH2              	100.00%		Q4UE78              	100.00%
Bootstrap support for L0PDH2 as seed ortholog is 100%.
Bootstrap support for Q4UE78 as seed ortholog is 100%.

Group of orthologs #414. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 T.annulata:67

L0PHW8              	100.00%		Q4UJ50              	100.00%
Bootstrap support for L0PHW8 as seed ortholog is 98%.
Bootstrap support for Q4UJ50 as seed ortholog is 99%.

Group of orthologs #415. Best score 157 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 T.annulata:157

L0PC18              	100.00%		Q4UCR5              	100.00%
Bootstrap support for L0PC18 as seed ortholog is 100%.
Bootstrap support for Q4UCR5 as seed ortholog is 100%.

Group of orthologs #416. Best score 156 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 T.annulata:41

L0PCJ7              	100.00%		Q4U8M8              	100.00%
Bootstrap support for L0PCJ7 as seed ortholog is 84%.
Bootstrap support for Q4U8M8 as seed ortholog is 82%.

Group of orthologs #417. Best score 156 bits
Score difference with first non-orthologous sequence - P.jiroveci:156 T.annulata:52

L0P992              	100.00%		Q4UHW1              	100.00%
Bootstrap support for L0P992 as seed ortholog is 100%.
Bootstrap support for Q4UHW1 as seed ortholog is 84%.

Group of orthologs #418. Best score 156 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 T.annulata:44

L0PAP9              	100.00%		Q4UHU1              	100.00%
Bootstrap support for L0PAP9 as seed ortholog is 99%.
Bootstrap support for Q4UHU1 as seed ortholog is 99%.

Group of orthologs #419. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 T.annulata:155

L0P8J2              	100.00%		Q4UE57              	100.00%
Bootstrap support for L0P8J2 as seed ortholog is 100%.
Bootstrap support for Q4UE57 as seed ortholog is 100%.

Group of orthologs #420. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 T.annulata:155

L0PAH1              	100.00%		Q4UE69              	100.00%
Bootstrap support for L0PAH1 as seed ortholog is 100%.
Bootstrap support for Q4UE69 as seed ortholog is 100%.

Group of orthologs #421. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 T.annulata:155

L0P8Q5              	100.00%		Q4UG81              	100.00%
Bootstrap support for L0P8Q5 as seed ortholog is 100%.
Bootstrap support for Q4UG81 as seed ortholog is 100%.

Group of orthologs #422. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 T.annulata:155

L0PBQ1              	100.00%		Q4UFV9              	100.00%
Bootstrap support for L0PBQ1 as seed ortholog is 100%.
Bootstrap support for Q4UFV9 as seed ortholog is 100%.

Group of orthologs #423. Best score 154 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 T.annulata:6

L0P7B1              	100.00%		Q4UDY9              	100.00%
Bootstrap support for L0P7B1 as seed ortholog is 99%.
Bootstrap support for Q4UDY9 as seed ortholog is 59%.
Alternative seed ortholog is Q4UCA9 (6 bits away from this cluster)

Group of orthologs #424. Best score 154 bits
Score difference with first non-orthologous sequence - P.jiroveci:154 T.annulata:87

L0PDZ2              	100.00%		Q4UIK7              	100.00%
Bootstrap support for L0PDZ2 as seed ortholog is 100%.
Bootstrap support for Q4UIK7 as seed ortholog is 98%.

Group of orthologs #425. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:153 T.annulata:153

L0PA92              	100.00%		Q4UC74              	100.00%
L0P8X8              	45.95%		
Bootstrap support for L0PA92 as seed ortholog is 100%.
Bootstrap support for Q4UC74 as seed ortholog is 100%.

Group of orthologs #426. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:22 T.annulata:153

L0P8E8              	100.00%		Q4UIU1              	100.00%
L0PEB0              	100.00%		
Bootstrap support for L0P8E8 as seed ortholog is 69%.
Alternative seed ortholog is L0PG34 (22 bits away from this cluster)
Bootstrap support for L0PEB0 as seed ortholog is 68%.
Alternative seed ortholog is L0PG34 (22 bits away from this cluster)
Bootstrap support for Q4UIU1 as seed ortholog is 100%.

Group of orthologs #427. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 T.annulata:53

L0PHH9              	100.00%		Q4U8F2              	100.00%
Bootstrap support for L0PHH9 as seed ortholog is 99%.
Bootstrap support for Q4U8F2 as seed ortholog is 96%.

Group of orthologs #428. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:153 T.annulata:153

L0PG43              	100.00%		Q4UAQ7              	100.00%
Bootstrap support for L0PG43 as seed ortholog is 100%.
Bootstrap support for Q4UAQ7 as seed ortholog is 100%.

Group of orthologs #429. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:153 T.annulata:153

L0PG10              	100.00%		Q4UC14              	100.00%
Bootstrap support for L0PG10 as seed ortholog is 100%.
Bootstrap support for Q4UC14 as seed ortholog is 100%.

Group of orthologs #430. Best score 152 bits
Score difference with first non-orthologous sequence - P.jiroveci:152 T.annulata:152

L0PDC7              	100.00%		Q4UDC6              	100.00%
Bootstrap support for L0PDC7 as seed ortholog is 100%.
Bootstrap support for Q4UDC6 as seed ortholog is 100%.

Group of orthologs #431. Best score 151 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 T.annulata:102

L0PGE3              	100.00%		Q4UIW6              	100.00%
L0PEY7              	56.03%		
Bootstrap support for L0PGE3 as seed ortholog is 98%.
Bootstrap support for Q4UIW6 as seed ortholog is 98%.

Group of orthologs #432. Best score 151 bits
Score difference with first non-orthologous sequence - P.jiroveci:151 T.annulata:36

L0PG89              	100.00%		Q4UD05              	100.00%
Bootstrap support for L0PG89 as seed ortholog is 100%.
Bootstrap support for Q4UD05 as seed ortholog is 79%.

Group of orthologs #433. Best score 150 bits
Score difference with first non-orthologous sequence - P.jiroveci:150 T.annulata:70

L0PCW8              	100.00%		Q4U9S4              	100.00%
Bootstrap support for L0PCW8 as seed ortholog is 100%.
Bootstrap support for Q4U9S4 as seed ortholog is 78%.

Group of orthologs #434. Best score 150 bits
Score difference with first non-orthologous sequence - P.jiroveci:150 T.annulata:150

L0PG23              	100.00%		Q4UDI9              	100.00%
Bootstrap support for L0PG23 as seed ortholog is 100%.
Bootstrap support for Q4UDI9 as seed ortholog is 100%.

Group of orthologs #435. Best score 149 bits
Score difference with first non-orthologous sequence - P.jiroveci:149 T.annulata:149

L0PA41              	100.00%		Q4UF90              	100.00%
Bootstrap support for L0PA41 as seed ortholog is 100%.
Bootstrap support for Q4UF90 as seed ortholog is 100%.

Group of orthologs #436. Best score 149 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 T.annulata:149

L0PG93              	100.00%		Q4UCL6              	100.00%
Bootstrap support for L0PG93 as seed ortholog is 98%.
Bootstrap support for Q4UCL6 as seed ortholog is 100%.

Group of orthologs #437. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 T.annulata:148

L0P8Q6              	100.00%		Q4UAD3              	100.00%
Bootstrap support for L0P8Q6 as seed ortholog is 95%.
Bootstrap support for Q4UAD3 as seed ortholog is 100%.

Group of orthologs #438. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:148 T.annulata:148

L0PB28              	100.00%		Q4UCT5              	100.00%
Bootstrap support for L0PB28 as seed ortholog is 100%.
Bootstrap support for Q4UCT5 as seed ortholog is 100%.

Group of orthologs #439. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:43 T.annulata:52

L0PFQ4              	100.00%		Q4UC89              	100.00%
Bootstrap support for L0PFQ4 as seed ortholog is 95%.
Bootstrap support for Q4UC89 as seed ortholog is 98%.

Group of orthologs #440. Best score 147 bits
Score difference with first non-orthologous sequence - P.jiroveci:41 T.annulata:147

L0PAI0              	100.00%		Q4U9H0              	100.00%
Bootstrap support for L0PAI0 as seed ortholog is 99%.
Bootstrap support for Q4U9H0 as seed ortholog is 100%.

Group of orthologs #441. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:15 T.annulata:6

L0PBR7              	100.00%		Q4UAL4              	100.00%
Bootstrap support for L0PBR7 as seed ortholog is 74%.
Alternative seed ortholog is L0PC11 (15 bits away from this cluster)
Bootstrap support for Q4UAL4 as seed ortholog is 69%.
Alternative seed ortholog is Q4U9Q8 (6 bits away from this cluster)

Group of orthologs #442. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:146 T.annulata:98

L0PBU7              	100.00%		Q4UGH9              	100.00%
Bootstrap support for L0PBU7 as seed ortholog is 100%.
Bootstrap support for Q4UGH9 as seed ortholog is 100%.

Group of orthologs #443. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 T.annulata:64

L0PCC3              	100.00%		Q4UHG9              	100.00%
Bootstrap support for L0PCC3 as seed ortholog is 97%.
Bootstrap support for Q4UHG9 as seed ortholog is 99%.

Group of orthologs #444. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:48 T.annulata:146

L0PCL8              	100.00%		Q4UHL2              	100.00%
Bootstrap support for L0PCL8 as seed ortholog is 83%.
Bootstrap support for Q4UHL2 as seed ortholog is 100%.

Group of orthologs #445. Best score 145 bits
Score difference with first non-orthologous sequence - P.jiroveci:145 T.annulata:145

L0PBV6              	100.00%		Q4U9U5              	100.00%
Bootstrap support for L0PBV6 as seed ortholog is 100%.
Bootstrap support for Q4U9U5 as seed ortholog is 100%.

Group of orthologs #446. Best score 145 bits
Score difference with first non-orthologous sequence - P.jiroveci:145 T.annulata:145

L0P800              	100.00%		Q4UIE5              	100.00%
Bootstrap support for L0P800 as seed ortholog is 100%.
Bootstrap support for Q4UIE5 as seed ortholog is 100%.

Group of orthologs #447. Best score 145 bits
Score difference with first non-orthologous sequence - P.jiroveci:145 T.annulata:145

L0PE85              	100.00%		Q4UCL0              	100.00%
Bootstrap support for L0PE85 as seed ortholog is 100%.
Bootstrap support for Q4UCL0 as seed ortholog is 100%.

Group of orthologs #448. Best score 145 bits
Score difference with first non-orthologous sequence - P.jiroveci:145 T.annulata:145

L0PDL6              	100.00%		Q4UJ09              	100.00%
Bootstrap support for L0PDL6 as seed ortholog is 100%.
Bootstrap support for Q4UJ09 as seed ortholog is 100%.

Group of orthologs #449. Best score 144 bits
Score difference with first non-orthologous sequence - P.jiroveci:144 T.annulata:144

L0PGD6              	100.00%		Q4UHP1              	100.00%
Bootstrap support for L0PGD6 as seed ortholog is 100%.
Bootstrap support for Q4UHP1 as seed ortholog is 100%.

Group of orthologs #450. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 T.annulata:143

L0PBM9              	100.00%		Q4U948              	100.00%
Bootstrap support for L0PBM9 as seed ortholog is 100%.
Bootstrap support for Q4U948 as seed ortholog is 100%.

Group of orthologs #451. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 T.annulata:143

L0P9B6              	100.00%		Q4UF45              	100.00%
Bootstrap support for L0P9B6 as seed ortholog is 100%.
Bootstrap support for Q4UF45 as seed ortholog is 100%.

Group of orthologs #452. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 T.annulata:143

L0PE02              	100.00%		Q4UE21              	100.00%
Bootstrap support for L0PE02 as seed ortholog is 100%.
Bootstrap support for Q4UE21 as seed ortholog is 100%.

Group of orthologs #453. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 T.annulata:143

L0PGZ5              	100.00%		Q4UGE8              	100.00%
Bootstrap support for L0PGZ5 as seed ortholog is 100%.
Bootstrap support for Q4UGE8 as seed ortholog is 100%.

Group of orthologs #454. Best score 142 bits
Score difference with first non-orthologous sequence - P.jiroveci:142 T.annulata:142

L0PBN7              	100.00%		Q4UGR5              	100.00%
Bootstrap support for L0PBN7 as seed ortholog is 100%.
Bootstrap support for Q4UGR5 as seed ortholog is 100%.

Group of orthologs #455. Best score 142 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 T.annulata:142

L0PAV2              	100.00%		Q4UI71              	100.00%
Bootstrap support for L0PAV2 as seed ortholog is 100%.
Bootstrap support for Q4UI71 as seed ortholog is 100%.

Group of orthologs #456. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 T.annulata:141

L0P957              	100.00%		Q4UAM2              	100.00%
                    	       		Q4UBX4              	11.63%
                    	       		Q4U8S5              	7.33%
Bootstrap support for L0P957 as seed ortholog is 100%.
Bootstrap support for Q4UAM2 as seed ortholog is 100%.

Group of orthologs #457. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 T.annulata:141

L0P7Q3              	100.00%		Q4UB74              	100.00%
Bootstrap support for L0P7Q3 as seed ortholog is 100%.
Bootstrap support for Q4UB74 as seed ortholog is 100%.

Group of orthologs #458. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 T.annulata:141

L0PDS0              	100.00%		Q4U9U1              	100.00%
Bootstrap support for L0PDS0 as seed ortholog is 100%.
Bootstrap support for Q4U9U1 as seed ortholog is 100%.

Group of orthologs #459. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 T.annulata:141

L0PGL6              	100.00%		Q4U9P8              	100.00%
Bootstrap support for L0PGL6 as seed ortholog is 100%.
Bootstrap support for Q4U9P8 as seed ortholog is 100%.

Group of orthologs #460. Best score 140 bits
Score difference with first non-orthologous sequence - P.jiroveci:31 T.annulata:38

L0P8M4              	100.00%		Q4UI69              	100.00%
                    	       		Q4UB16              	8.13%
Bootstrap support for L0P8M4 as seed ortholog is 89%.
Bootstrap support for Q4UI69 as seed ortholog is 91%.

Group of orthologs #461. Best score 140 bits
Score difference with first non-orthologous sequence - P.jiroveci:140 T.annulata:140

L0P9K2              	100.00%		Q4UEN1              	100.00%
Bootstrap support for L0P9K2 as seed ortholog is 100%.
Bootstrap support for Q4UEN1 as seed ortholog is 100%.

Group of orthologs #462. Best score 140 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 T.annulata:76

L0PEW5              	100.00%		Q4UIU5              	100.00%
Bootstrap support for L0PEW5 as seed ortholog is 90%.
Bootstrap support for Q4UIU5 as seed ortholog is 92%.

Group of orthologs #463. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 T.annulata:139

L0P6U6              	100.00%		Q4UIF4              	100.00%
L0PDF8              	5.34%		
Bootstrap support for L0P6U6 as seed ortholog is 100%.
Bootstrap support for Q4UIF4 as seed ortholog is 100%.

Group of orthologs #464. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 T.annulata:139

L0PA78              	100.00%		Q4UA81              	100.00%
Bootstrap support for L0PA78 as seed ortholog is 100%.
Bootstrap support for Q4UA81 as seed ortholog is 100%.

Group of orthologs #465. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 T.annulata:137

L0PBI9              	100.00%		Q4UE06              	100.00%
Bootstrap support for L0PBI9 as seed ortholog is 100%.
Bootstrap support for Q4UE06 as seed ortholog is 100%.

Group of orthologs #466. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 T.annulata:137

L0PCL4              	100.00%		Q4UD92              	100.00%
Bootstrap support for L0PCL4 as seed ortholog is 100%.
Bootstrap support for Q4UD92 as seed ortholog is 100%.

Group of orthologs #467. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 T.annulata:17

L0P8R8              	100.00%		Q4UHP3              	100.00%
Bootstrap support for L0P8R8 as seed ortholog is 100%.
Bootstrap support for Q4UHP3 as seed ortholog is 62%.
Alternative seed ortholog is Q4UED9 (17 bits away from this cluster)

Group of orthologs #468. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 T.annulata:137

L0PES3              	100.00%		Q4UJ58              	100.00%
Bootstrap support for L0PES3 as seed ortholog is 100%.
Bootstrap support for Q4UJ58 as seed ortholog is 100%.

Group of orthologs #469. Best score 136 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 T.annulata:136

L0PEZ4              	100.00%		Q4U8W0              	100.00%
Bootstrap support for L0PEZ4 as seed ortholog is 100%.
Bootstrap support for Q4U8W0 as seed ortholog is 100%.

Group of orthologs #470. Best score 136 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 T.annulata:136

L0PCB3              	100.00%		Q4UC41              	100.00%
Bootstrap support for L0PCB3 as seed ortholog is 100%.
Bootstrap support for Q4UC41 as seed ortholog is 100%.

Group of orthologs #471. Best score 136 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 T.annulata:136

L0P8C9              	100.00%		Q4UGE9              	100.00%
Bootstrap support for L0P8C9 as seed ortholog is 100%.
Bootstrap support for Q4UGE9 as seed ortholog is 100%.

Group of orthologs #472. Best score 136 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 T.annulata:136

L0PEA3              	100.00%		Q4UCG9              	100.00%
Bootstrap support for L0PEA3 as seed ortholog is 100%.
Bootstrap support for Q4UCG9 as seed ortholog is 100%.

Group of orthologs #473. Best score 135 bits
Score difference with first non-orthologous sequence - P.jiroveci:135 T.annulata:135

L0PD44              	100.00%		Q4UA41              	100.00%
Bootstrap support for L0PD44 as seed ortholog is 100%.
Bootstrap support for Q4UA41 as seed ortholog is 100%.

Group of orthologs #474. Best score 135 bits
Score difference with first non-orthologous sequence - P.jiroveci:135 T.annulata:135

L0PGE7              	100.00%		Q4UDE6              	100.00%
Bootstrap support for L0PGE7 as seed ortholog is 100%.
Bootstrap support for Q4UDE6 as seed ortholog is 100%.

Group of orthologs #475. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:134 T.annulata:134

L0PDN4              	100.00%		Q4U9K5              	100.00%
Bootstrap support for L0PDN4 as seed ortholog is 100%.
Bootstrap support for Q4U9K5 as seed ortholog is 100%.

Group of orthologs #476. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:134 T.annulata:134

L0PEG0              	100.00%		Q4UA42              	100.00%
Bootstrap support for L0PEG0 as seed ortholog is 100%.
Bootstrap support for Q4UA42 as seed ortholog is 100%.

Group of orthologs #477. Best score 133 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 T.annulata:133

L0PAG1              	100.00%		Q4UCJ6              	100.00%
Bootstrap support for L0PAG1 as seed ortholog is 100%.
Bootstrap support for Q4UCJ6 as seed ortholog is 100%.

Group of orthologs #478. Best score 133 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 T.annulata:133

L0P838              	100.00%		Q4UGN4              	100.00%
Bootstrap support for L0P838 as seed ortholog is 100%.
Bootstrap support for Q4UGN4 as seed ortholog is 100%.

Group of orthologs #479. Best score 132 bits
Score difference with first non-orthologous sequence - P.jiroveci:132 T.annulata:132

L0P9U1              	100.00%		Q4UA15              	100.00%
Bootstrap support for L0P9U1 as seed ortholog is 100%.
Bootstrap support for Q4UA15 as seed ortholog is 100%.

Group of orthologs #480. Best score 132 bits
Score difference with first non-orthologous sequence - P.jiroveci:132 T.annulata:132

L0PE37              	100.00%		Q4UAB6              	100.00%
Bootstrap support for L0PE37 as seed ortholog is 100%.
Bootstrap support for Q4UAB6 as seed ortholog is 100%.

Group of orthologs #481. Best score 132 bits
Score difference with first non-orthologous sequence - P.jiroveci:132 T.annulata:132

L0PF79              	100.00%		Q4U9X7              	100.00%
Bootstrap support for L0PF79 as seed ortholog is 100%.
Bootstrap support for Q4U9X7 as seed ortholog is 100%.

Group of orthologs #482. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 T.annulata:131

L0P9F2              	100.00%		Q4UGP7              	100.00%
Bootstrap support for L0P9F2 as seed ortholog is 100%.
Bootstrap support for Q4UGP7 as seed ortholog is 100%.

Group of orthologs #483. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 T.annulata:131

L0PFW7              	100.00%		Q4UCX7              	100.00%
Bootstrap support for L0PFW7 as seed ortholog is 100%.
Bootstrap support for Q4UCX7 as seed ortholog is 100%.

Group of orthologs #484. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 T.annulata:131

L0PCU6              	100.00%		Q4UG04              	100.00%
Bootstrap support for L0PCU6 as seed ortholog is 100%.
Bootstrap support for Q4UG04 as seed ortholog is 100%.

Group of orthologs #485. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 T.annulata:2

L0PEX6              	100.00%		Q4UGG9              	100.00%
Bootstrap support for L0PEX6 as seed ortholog is 97%.
Bootstrap support for Q4UGG9 as seed ortholog is 45%.
Alternative seed ortholog is Q4UD03 (2 bits away from this cluster)

Group of orthologs #486. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 T.annulata:131

L0PGK0              	100.00%		Q4UF20              	100.00%
Bootstrap support for L0PGK0 as seed ortholog is 100%.
Bootstrap support for Q4UF20 as seed ortholog is 100%.

Group of orthologs #487. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 T.annulata:131

L0PG69              	100.00%		Q4UFV3              	100.00%
Bootstrap support for L0PG69 as seed ortholog is 98%.
Bootstrap support for Q4UFV3 as seed ortholog is 100%.

Group of orthologs #488. Best score 130 bits
Score difference with first non-orthologous sequence - P.jiroveci:130 T.annulata:130

L0PBJ0              	100.00%		Q4UAP1              	100.00%
Bootstrap support for L0PBJ0 as seed ortholog is 100%.
Bootstrap support for Q4UAP1 as seed ortholog is 100%.

Group of orthologs #489. Best score 130 bits
Score difference with first non-orthologous sequence - P.jiroveci:130 T.annulata:130

L0PFS1              	100.00%		Q4UC21              	100.00%
Bootstrap support for L0PFS1 as seed ortholog is 100%.
Bootstrap support for Q4UC21 as seed ortholog is 100%.

Group of orthologs #490. Best score 130 bits
Score difference with first non-orthologous sequence - P.jiroveci:130 T.annulata:130

L0PGQ4              	100.00%		Q4UG74              	100.00%
Bootstrap support for L0PGQ4 as seed ortholog is 100%.
Bootstrap support for Q4UG74 as seed ortholog is 100%.

Group of orthologs #491. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:40 T.annulata:15

L0PDR6              	100.00%		Q4UDH1              	100.00%
Bootstrap support for L0PDR6 as seed ortholog is 82%.
Bootstrap support for Q4UDH1 as seed ortholog is 64%.
Alternative seed ortholog is Q4UE45 (15 bits away from this cluster)

Group of orthologs #492. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:129 T.annulata:129

L0PFE9              	100.00%		Q4UIB7              	100.00%
Bootstrap support for L0PFE9 as seed ortholog is 100%.
Bootstrap support for Q4UIB7 as seed ortholog is 100%.

Group of orthologs #493. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 T.annulata:128

L0P9I5              	100.00%		Q4U9J8              	100.00%
Bootstrap support for L0P9I5 as seed ortholog is 100%.
Bootstrap support for Q4U9J8 as seed ortholog is 100%.

Group of orthologs #494. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 T.annulata:128

L0P9N4              	100.00%		Q4UAD7              	100.00%
Bootstrap support for L0P9N4 as seed ortholog is 100%.
Bootstrap support for Q4UAD7 as seed ortholog is 100%.

Group of orthologs #495. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 T.annulata:128

L0PBD0              	100.00%		Q4U9F3              	100.00%
Bootstrap support for L0PBD0 as seed ortholog is 100%.
Bootstrap support for Q4U9F3 as seed ortholog is 100%.

Group of orthologs #496. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 T.annulata:71

L0P839              	100.00%		Q4UER7              	100.00%
Bootstrap support for L0P839 as seed ortholog is 100%.
Bootstrap support for Q4UER7 as seed ortholog is 98%.

Group of orthologs #497. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 T.annulata:128

L0PHR2              	100.00%		Q4UFC2              	100.00%
Bootstrap support for L0PHR2 as seed ortholog is 100%.
Bootstrap support for Q4UFC2 as seed ortholog is 100%.

Group of orthologs #498. Best score 127 bits
Score difference with first non-orthologous sequence - P.jiroveci:127 T.annulata:127

L0PAB8              	100.00%		Q4U8L5              	100.00%
Bootstrap support for L0PAB8 as seed ortholog is 100%.
Bootstrap support for Q4U8L5 as seed ortholog is 100%.

Group of orthologs #499. Best score 127 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 T.annulata:127

L0PFW4              	100.00%		Q4UC98              	100.00%
Bootstrap support for L0PFW4 as seed ortholog is 93%.
Bootstrap support for Q4UC98 as seed ortholog is 100%.

Group of orthologs #500. Best score 127 bits
Score difference with first non-orthologous sequence - P.jiroveci:127 T.annulata:127

L0PDL5              	100.00%		Q4UFG7              	100.00%
Bootstrap support for L0PDL5 as seed ortholog is 100%.
Bootstrap support for Q4UFG7 as seed ortholog is 100%.

Group of orthologs #501. Best score 126 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 T.annulata:126

L0PA60              	100.00%		Q4UBC9              	100.00%
Bootstrap support for L0PA60 as seed ortholog is 100%.
Bootstrap support for Q4UBC9 as seed ortholog is 100%.

Group of orthologs #502. Best score 126 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 T.annulata:126

L0PBY9              	100.00%		Q4UDA8              	100.00%
Bootstrap support for L0PBY9 as seed ortholog is 100%.
Bootstrap support for Q4UDA8 as seed ortholog is 100%.

Group of orthologs #503. Best score 126 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 T.annulata:126

L0PES4              	100.00%		Q4UAX5              	100.00%
Bootstrap support for L0PES4 as seed ortholog is 100%.
Bootstrap support for Q4UAX5 as seed ortholog is 100%.

Group of orthologs #504. Best score 125 bits
Score difference with first non-orthologous sequence - P.jiroveci:125 T.annulata:125

L0PEI9              	100.00%		Q4U9Y9              	100.00%
Bootstrap support for L0PEI9 as seed ortholog is 100%.
Bootstrap support for Q4U9Y9 as seed ortholog is 100%.

Group of orthologs #505. Best score 125 bits
Score difference with first non-orthologous sequence - P.jiroveci:4 T.annulata:33

L0PA33              	100.00%		Q4UFB7              	100.00%
Bootstrap support for L0PA33 as seed ortholog is 44%.
Alternative seed ortholog is L0PGP9 (4 bits away from this cluster)
Bootstrap support for Q4UFB7 as seed ortholog is 83%.

Group of orthologs #506. Best score 125 bits
Score difference with first non-orthologous sequence - P.jiroveci:125 T.annulata:46

L0PCZ4              	100.00%		Q4UI15              	100.00%
Bootstrap support for L0PCZ4 as seed ortholog is 100%.
Bootstrap support for Q4UI15 as seed ortholog is 91%.

Group of orthologs #507. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 T.annulata:55

L0P871              	100.00%		Q4UG76              	100.00%
L0PAC4              	99.46%		
Bootstrap support for L0P871 as seed ortholog is 100%.
Bootstrap support for Q4UG76 as seed ortholog is 88%.

Group of orthologs #508. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 T.annulata:124

L0PD43              	100.00%		Q4UHN2              	100.00%
L0PB48              	6.71%		
Bootstrap support for L0PD43 as seed ortholog is 100%.
Bootstrap support for Q4UHN2 as seed ortholog is 100%.

Group of orthologs #509. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 T.annulata:124

L0PA35              	100.00%		Q4UDP6              	100.00%
Bootstrap support for L0PA35 as seed ortholog is 100%.
Bootstrap support for Q4UDP6 as seed ortholog is 100%.

Group of orthologs #510. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 T.annulata:124

L0PFY9              	100.00%		Q4UAZ5              	100.00%
Bootstrap support for L0PFY9 as seed ortholog is 100%.
Bootstrap support for Q4UAZ5 as seed ortholog is 100%.

Group of orthologs #511. Best score 123 bits
Score difference with first non-orthologous sequence - P.jiroveci:123 T.annulata:123

L0PAR2              	100.00%		Q4UE08              	100.00%
Bootstrap support for L0PAR2 as seed ortholog is 100%.
Bootstrap support for Q4UE08 as seed ortholog is 100%.

Group of orthologs #512. Best score 123 bits
Score difference with first non-orthologous sequence - P.jiroveci:123 T.annulata:123

L0PCZ5              	100.00%		Q4UHX9              	100.00%
Bootstrap support for L0PCZ5 as seed ortholog is 100%.
Bootstrap support for Q4UHX9 as seed ortholog is 100%.

Group of orthologs #513. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 T.annulata:122

L0PAG8              	100.00%		Q4U8R8              	100.00%
Bootstrap support for L0PAG8 as seed ortholog is 100%.
Bootstrap support for Q4U8R8 as seed ortholog is 100%.

Group of orthologs #514. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 T.annulata:122

L0P967              	100.00%		Q4UF42              	100.00%
Bootstrap support for L0P967 as seed ortholog is 100%.
Bootstrap support for Q4UF42 as seed ortholog is 100%.

Group of orthologs #515. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 T.annulata:122

L0PFZ1              	100.00%		Q4UBZ4              	100.00%
Bootstrap support for L0PFZ1 as seed ortholog is 100%.
Bootstrap support for Q4UBZ4 as seed ortholog is 100%.

Group of orthologs #516. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 T.annulata:122

L0PCH8              	100.00%		Q4UFY3              	100.00%
Bootstrap support for L0PCH8 as seed ortholog is 100%.
Bootstrap support for Q4UFY3 as seed ortholog is 100%.

Group of orthologs #517. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 T.annulata:122

L0PC96              	100.00%		Q4UGE7              	100.00%
Bootstrap support for L0PC96 as seed ortholog is 100%.
Bootstrap support for Q4UGE7 as seed ortholog is 100%.

Group of orthologs #518. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 T.annulata:121

L0P7Y4              	100.00%		Q4U8L6              	100.00%
Bootstrap support for L0P7Y4 as seed ortholog is 100%.
Bootstrap support for Q4U8L6 as seed ortholog is 100%.

Group of orthologs #519. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 T.annulata:121

L0PAD3              	100.00%		Q4UAM6              	100.00%
Bootstrap support for L0PAD3 as seed ortholog is 100%.
Bootstrap support for Q4UAM6 as seed ortholog is 100%.

Group of orthologs #520. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 T.annulata:75

L0P7N9              	100.00%		Q4UHZ0              	100.00%
Bootstrap support for L0P7N9 as seed ortholog is 100%.
Bootstrap support for Q4UHZ0 as seed ortholog is 99%.

Group of orthologs #521. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 T.annulata:121

L0PAM3              	100.00%		Q4UGB3              	100.00%
Bootstrap support for L0PAM3 as seed ortholog is 100%.
Bootstrap support for Q4UGB3 as seed ortholog is 100%.

Group of orthologs #522. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 T.annulata:120

L0P8B2              	100.00%		Q4UC16              	100.00%
Bootstrap support for L0P8B2 as seed ortholog is 100%.
Bootstrap support for Q4UC16 as seed ortholog is 100%.

Group of orthologs #523. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:9 T.annulata:120

L0PAQ4              	100.00%		Q4UDJ9              	100.00%
Bootstrap support for L0PAQ4 as seed ortholog is 56%.
Alternative seed ortholog is L0PCW4 (9 bits away from this cluster)
Bootstrap support for Q4UDJ9 as seed ortholog is 100%.

Group of orthologs #524. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 T.annulata:120

L0PDJ6              	100.00%		Q4UIZ7              	100.00%
Bootstrap support for L0PDJ6 as seed ortholog is 100%.
Bootstrap support for Q4UIZ7 as seed ortholog is 100%.

Group of orthologs #525. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 T.annulata:119

L0PG87              	100.00%		Q4U8S3              	100.00%
Bootstrap support for L0PG87 as seed ortholog is 100%.
Bootstrap support for Q4U8S3 as seed ortholog is 100%.

Group of orthologs #526. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 T.annulata:19

L0PEQ4              	100.00%		Q4UFZ3              	100.00%
Bootstrap support for L0PEQ4 as seed ortholog is 100%.
Bootstrap support for Q4UFZ3 as seed ortholog is 73%.
Alternative seed ortholog is Q4UFV7 (19 bits away from this cluster)

Group of orthologs #527. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 T.annulata:118

L0P8T4              	100.00%		Q4UFK5              	100.00%
Bootstrap support for L0P8T4 as seed ortholog is 100%.
Bootstrap support for Q4UFK5 as seed ortholog is 100%.

Group of orthologs #528. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 T.annulata:118

L0P9X0              	100.00%		Q4UGL5              	100.00%
Bootstrap support for L0P9X0 as seed ortholog is 100%.
Bootstrap support for Q4UGL5 as seed ortholog is 100%.

Group of orthologs #529. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 T.annulata:118

L0P9R8              	100.00%		Q4UI24              	100.00%
Bootstrap support for L0P9R8 as seed ortholog is 100%.
Bootstrap support for Q4UI24 as seed ortholog is 100%.

Group of orthologs #530. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 T.annulata:118

L0PAE9              	100.00%		Q4UIW7              	100.00%
Bootstrap support for L0PAE9 as seed ortholog is 100%.
Bootstrap support for Q4UIW7 as seed ortholog is 100%.

Group of orthologs #531. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 T.annulata:118

L0PCM5              	100.00%		Q4UHG2              	100.00%
Bootstrap support for L0PCM5 as seed ortholog is 100%.
Bootstrap support for Q4UHG2 as seed ortholog is 100%.

Group of orthologs #532. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 T.annulata:116

L0P8F5              	100.00%		Q4U9W0              	100.00%
Bootstrap support for L0P8F5 as seed ortholog is 100%.
Bootstrap support for Q4U9W0 as seed ortholog is 100%.

Group of orthologs #533. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 T.annulata:116

L0P940              	100.00%		Q4UIB6              	100.00%
Bootstrap support for L0P940 as seed ortholog is 100%.
Bootstrap support for Q4UIB6 as seed ortholog is 100%.

Group of orthologs #534. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 T.annulata:37

L0PF53              	100.00%		Q4UCX8              	100.00%
Bootstrap support for L0PF53 as seed ortholog is 100%.
Bootstrap support for Q4UCX8 as seed ortholog is 87%.

Group of orthologs #535. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 T.annulata:116

L0PD86              	100.00%		Q4UGC5              	100.00%
Bootstrap support for L0PD86 as seed ortholog is 100%.
Bootstrap support for Q4UGC5 as seed ortholog is 100%.

Group of orthologs #536. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 T.annulata:115

L0PAA1              	100.00%		Q4U8I7              	100.00%
Bootstrap support for L0PAA1 as seed ortholog is 100%.
Bootstrap support for Q4U8I7 as seed ortholog is 100%.

Group of orthologs #537. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 T.annulata:115

L0PG54              	100.00%		Q4U9N7              	100.00%
Bootstrap support for L0PG54 as seed ortholog is 100%.
Bootstrap support for Q4U9N7 as seed ortholog is 100%.

Group of orthologs #538. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 T.annulata:115

L0PC68              	100.00%		Q4UGR4              	100.00%
Bootstrap support for L0PC68 as seed ortholog is 100%.
Bootstrap support for Q4UGR4 as seed ortholog is 100%.

Group of orthologs #539. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 T.annulata:114

L0P6S2              	100.00%		Q4UDG3              	100.00%
Bootstrap support for L0P6S2 as seed ortholog is 100%.
Bootstrap support for Q4UDG3 as seed ortholog is 100%.

Group of orthologs #540. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 T.annulata:19

L0PDE4              	100.00%		Q4UDI1              	100.00%
Bootstrap support for L0PDE4 as seed ortholog is 100%.
Bootstrap support for Q4UDI1 as seed ortholog is 72%.
Alternative seed ortholog is Q4U8T0 (19 bits away from this cluster)

Group of orthologs #541. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 T.annulata:114

L0PFD7              	100.00%		Q4UJ31              	100.00%
Bootstrap support for L0PFD7 as seed ortholog is 100%.
Bootstrap support for Q4UJ31 as seed ortholog is 100%.

Group of orthologs #542. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:18 T.annulata:113

L0PB86              	100.00%		Q4UDM7              	100.00%
Bootstrap support for L0PB86 as seed ortholog is 65%.
Alternative seed ortholog is L0PE81 (18 bits away from this cluster)
Bootstrap support for Q4UDM7 as seed ortholog is 100%.

Group of orthologs #543. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 T.annulata:59

L0PDE1              	100.00%		Q4UEF6              	100.00%
Bootstrap support for L0PDE1 as seed ortholog is 97%.
Bootstrap support for Q4UEF6 as seed ortholog is 96%.

Group of orthologs #544. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:113 T.annulata:113

L0PFY6              	100.00%		Q4UIX5              	100.00%
Bootstrap support for L0PFY6 as seed ortholog is 100%.
Bootstrap support for Q4UIX5 as seed ortholog is 100%.

Group of orthologs #545. Best score 112 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 T.annulata:112

L0PAG4              	100.00%		Q4UDZ1              	100.00%
Bootstrap support for L0PAG4 as seed ortholog is 98%.
Bootstrap support for Q4UDZ1 as seed ortholog is 100%.

Group of orthologs #546. Best score 112 bits
Score difference with first non-orthologous sequence - P.jiroveci:112 T.annulata:112

L0PFZ8              	100.00%		Q4U8P3              	100.00%
Bootstrap support for L0PFZ8 as seed ortholog is 100%.
Bootstrap support for Q4U8P3 as seed ortholog is 100%.

Group of orthologs #547. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0P9F7              	100.00%		Q4U9H7              	100.00%
L0PGP0              	100.00%		
Bootstrap support for L0P9F7 as seed ortholog is 100%.
Bootstrap support for L0PGP0 as seed ortholog is 100%.
Bootstrap support for Q4U9H7 as seed ortholog is 100%.

Group of orthologs #548. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0P9R7              	100.00%		Q4UAV7              	100.00%
Bootstrap support for L0P9R7 as seed ortholog is 100%.
Bootstrap support for Q4UAV7 as seed ortholog is 100%.

Group of orthologs #549. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0PB61              	100.00%		Q4U9R0              	100.00%
Bootstrap support for L0PB61 as seed ortholog is 100%.
Bootstrap support for Q4U9R0 as seed ortholog is 100%.

Group of orthologs #550. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0P8Y0              	100.00%		Q4UES3              	100.00%
Bootstrap support for L0P8Y0 as seed ortholog is 100%.
Bootstrap support for Q4UES3 as seed ortholog is 100%.

Group of orthologs #551. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0P9W6              	100.00%		Q4UF84              	100.00%
Bootstrap support for L0P9W6 as seed ortholog is 100%.
Bootstrap support for Q4UF84 as seed ortholog is 100%.

Group of orthologs #552. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0PFC0              	100.00%		Q4UDQ3              	100.00%
Bootstrap support for L0PFC0 as seed ortholog is 100%.
Bootstrap support for Q4UDQ3 as seed ortholog is 100%.

Group of orthologs #553. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 T.annulata:111

L0PEK8              	100.00%		Q4UEP7              	100.00%
Bootstrap support for L0PEK8 as seed ortholog is 100%.
Bootstrap support for Q4UEP7 as seed ortholog is 100%.

Group of orthologs #554. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 T.annulata:110

L0PD37              	100.00%		Q4UAG7              	100.00%
                    	       		Q4UAG9              	10.49%
                    	       		Q4UAG8              	8.63%
Bootstrap support for L0PD37 as seed ortholog is 100%.
Bootstrap support for Q4UAG7 as seed ortholog is 100%.

Group of orthologs #555. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 T.annulata:110

L0P7S0              	100.00%		Q4UDW7              	100.00%
Bootstrap support for L0P7S0 as seed ortholog is 100%.
Bootstrap support for Q4UDW7 as seed ortholog is 100%.

Group of orthologs #556. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 T.annulata:110

L0P9M3              	100.00%		Q4UCL2              	100.00%
Bootstrap support for L0P9M3 as seed ortholog is 100%.
Bootstrap support for Q4UCL2 as seed ortholog is 100%.

Group of orthologs #557. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 T.annulata:110

L0PCZ2              	100.00%		Q4U9R9              	100.00%
Bootstrap support for L0PCZ2 as seed ortholog is 100%.
Bootstrap support for Q4U9R9 as seed ortholog is 100%.

Group of orthologs #558. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 T.annulata:110

L0PE03              	100.00%		Q4UAM3              	100.00%
Bootstrap support for L0PE03 as seed ortholog is 100%.
Bootstrap support for Q4UAM3 as seed ortholog is 100%.

Group of orthologs #559. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 T.annulata:110

L0P7Z9              	100.00%		Q4UGG7              	100.00%
Bootstrap support for L0P7Z9 as seed ortholog is 100%.
Bootstrap support for Q4UGG7 as seed ortholog is 100%.

Group of orthologs #560. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 T.annulata:109

L0PDV0              	100.00%		Q4UBG4              	100.00%
Bootstrap support for L0PDV0 as seed ortholog is 100%.
Bootstrap support for Q4UBG4 as seed ortholog is 100%.

Group of orthologs #561. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 T.annulata:109

L0PDH1              	100.00%		Q4UDE2              	100.00%
Bootstrap support for L0PDH1 as seed ortholog is 100%.
Bootstrap support for Q4UDE2 as seed ortholog is 100%.

Group of orthologs #562. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 T.annulata:109

L0PG13              	100.00%		Q4UBK0              	100.00%
Bootstrap support for L0PG13 as seed ortholog is 100%.
Bootstrap support for Q4UBK0 as seed ortholog is 100%.

Group of orthologs #563. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:108 T.annulata:108

L0PEN4              	100.00%		Q4UCZ9              	100.00%
                    	       		Q4UD00              	92.73%
                    	       		Q4UIR3              	60.48%
Bootstrap support for L0PEN4 as seed ortholog is 100%.
Bootstrap support for Q4UCZ9 as seed ortholog is 100%.

Group of orthologs #564. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:108 T.annulata:17

L0PC06              	100.00%		Q4UAC9              	100.00%
                    	       		Q4UIN3              	100.00%
Bootstrap support for L0PC06 as seed ortholog is 100%.
Bootstrap support for Q4UAC9 as seed ortholog is 70%.
Alternative seed ortholog is Q4UBQ0 (17 bits away from this cluster)
Bootstrap support for Q4UIN3 as seed ortholog is 73%.
Alternative seed ortholog is Q4UBQ0 (17 bits away from this cluster)

Group of orthologs #565. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 T.annulata:107

L0PE97              	100.00%		Q4U9M1              	100.00%
Bootstrap support for L0PE97 as seed ortholog is 100%.
Bootstrap support for Q4U9M1 as seed ortholog is 100%.

Group of orthologs #566. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 T.annulata:107

L0PCC0              	100.00%		Q4UF87              	100.00%
Bootstrap support for L0PCC0 as seed ortholog is 100%.
Bootstrap support for Q4UF87 as seed ortholog is 100%.

Group of orthologs #567. Best score 106 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 T.annulata:106

L0PEI5              	100.00%		Q4UF50              	100.00%
L0P996              	5.50%		
Bootstrap support for L0PEI5 as seed ortholog is 100%.
Bootstrap support for Q4UF50 as seed ortholog is 100%.

Group of orthologs #568. Best score 105 bits
Score difference with first non-orthologous sequence - P.jiroveci:105 T.annulata:105

L0PDT4              	100.00%		Q4UFG6              	100.00%
Bootstrap support for L0PDT4 as seed ortholog is 100%.
Bootstrap support for Q4UFG6 as seed ortholog is 100%.

Group of orthologs #569. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 T.annulata:104

L0P8H6              	100.00%		Q4UB68              	100.00%
Bootstrap support for L0P8H6 as seed ortholog is 100%.
Bootstrap support for Q4UB68 as seed ortholog is 100%.

Group of orthologs #570. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 T.annulata:104

L0PE13              	100.00%		Q4UB99              	100.00%
Bootstrap support for L0PE13 as seed ortholog is 100%.
Bootstrap support for Q4UB99 as seed ortholog is 100%.

Group of orthologs #571. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 T.annulata:103

L0PAH2              	100.00%		Q4U9U4              	100.00%
Bootstrap support for L0PAH2 as seed ortholog is 100%.
Bootstrap support for Q4U9U4 as seed ortholog is 100%.

Group of orthologs #572. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 T.annulata:103

L0PHP6              	100.00%		Q4UG33              	100.00%
Bootstrap support for L0PHP6 as seed ortholog is 100%.
Bootstrap support for Q4UG33 as seed ortholog is 100%.

Group of orthologs #573. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 T.annulata:102

L0PFW9              	100.00%		Q4UE83              	100.00%
                    	       		Q4UD23              	5.83%
Bootstrap support for L0PFW9 as seed ortholog is 100%.
Bootstrap support for Q4UE83 as seed ortholog is 100%.

Group of orthologs #574. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 T.annulata:102

L0PDX2              	100.00%		Q4UB02              	100.00%
Bootstrap support for L0PDX2 as seed ortholog is 100%.
Bootstrap support for Q4UB02 as seed ortholog is 100%.

Group of orthologs #575. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 T.annulata:102

L0PFZ3              	100.00%		Q4UBE9              	100.00%
Bootstrap support for L0PFZ3 as seed ortholog is 100%.
Bootstrap support for Q4UBE9 as seed ortholog is 100%.

Group of orthologs #576. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 T.annulata:102

L0PA86              	100.00%		Q4UIU0              	100.00%
Bootstrap support for L0PA86 as seed ortholog is 100%.
Bootstrap support for Q4UIU0 as seed ortholog is 100%.

Group of orthologs #577. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 T.annulata:101

L0P8S1              	100.00%		Q4UB44              	100.00%
Bootstrap support for L0P8S1 as seed ortholog is 100%.
Bootstrap support for Q4UB44 as seed ortholog is 100%.

Group of orthologs #578. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 T.annulata:101

L0PEA1              	100.00%		Q4U8G3              	100.00%
Bootstrap support for L0PEA1 as seed ortholog is 100%.
Bootstrap support for Q4U8G3 as seed ortholog is 100%.

Group of orthologs #579. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 T.annulata:101

L0PBA3              	100.00%		Q4UC06              	100.00%
Bootstrap support for L0PBA3 as seed ortholog is 100%.
Bootstrap support for Q4UC06 as seed ortholog is 100%.

Group of orthologs #580. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:31 T.annulata:101

L0PF38              	100.00%		Q4U913              	100.00%
Bootstrap support for L0PF38 as seed ortholog is 86%.
Bootstrap support for Q4U913 as seed ortholog is 100%.

Group of orthologs #581. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 T.annulata:101

L0PCK8              	100.00%		Q4UIJ8              	100.00%
Bootstrap support for L0PCK8 as seed ortholog is 100%.
Bootstrap support for Q4UIJ8 as seed ortholog is 100%.

Group of orthologs #582. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 T.annulata:100

L0PAZ1              	100.00%		Q4U9K3              	100.00%
Bootstrap support for L0PAZ1 as seed ortholog is 100%.
Bootstrap support for Q4U9K3 as seed ortholog is 100%.

Group of orthologs #583. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 T.annulata:100

L0P7A1              	100.00%		Q4UI49              	100.00%
Bootstrap support for L0P7A1 as seed ortholog is 100%.
Bootstrap support for Q4UI49 as seed ortholog is 100%.

Group of orthologs #584. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 T.annulata:100

L0PEV4              	100.00%		Q4UB77              	100.00%
Bootstrap support for L0PEV4 as seed ortholog is 100%.
Bootstrap support for Q4UB77 as seed ortholog is 100%.

Group of orthologs #585. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 T.annulata:100

L0PBH8              	100.00%		Q4UIM1              	100.00%
Bootstrap support for L0PBH8 as seed ortholog is 88%.
Bootstrap support for Q4UIM1 as seed ortholog is 100%.

Group of orthologs #586. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 T.annulata:99

L0PCE9              	100.00%		Q4UBB6              	100.00%
L0PBP3              	12.52%		
L0PBN5              	11.96%		
Bootstrap support for L0PCE9 as seed ortholog is 100%.
Bootstrap support for Q4UBB6 as seed ortholog is 100%.

Group of orthologs #587. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 T.annulata:99

L0PBC7              	100.00%		Q4UCM7              	100.00%
Bootstrap support for L0PBC7 as seed ortholog is 100%.
Bootstrap support for Q4UCM7 as seed ortholog is 100%.

Group of orthologs #588. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 T.annulata:99

L0PI09              	100.00%		Q4UDD9              	100.00%
Bootstrap support for L0PI09 as seed ortholog is 100%.
Bootstrap support for Q4UDD9 as seed ortholog is 100%.

Group of orthologs #589. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 T.annulata:18

L0PD63              	100.00%		Q4UI29              	100.00%
Bootstrap support for L0PD63 as seed ortholog is 100%.
Bootstrap support for Q4UI29 as seed ortholog is 73%.
Alternative seed ortholog is Q4UCA9 (18 bits away from this cluster)

Group of orthologs #590. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 T.annulata:99

L0PG84              	100.00%		Q4UIL5              	100.00%
Bootstrap support for L0PG84 as seed ortholog is 100%.
Bootstrap support for Q4UIL5 as seed ortholog is 100%.

Group of orthologs #591. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:38 T.annulata:97

L0PA51              	100.00%		Q4UF21              	100.00%
Bootstrap support for L0PA51 as seed ortholog is 94%.
Bootstrap support for Q4UF21 as seed ortholog is 100%.

Group of orthologs #592. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 T.annulata:97

L0P8K4              	100.00%		Q4UIE1              	100.00%
Bootstrap support for L0P8K4 as seed ortholog is 100%.
Bootstrap support for Q4UIE1 as seed ortholog is 100%.

Group of orthologs #593. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 T.annulata:96

L0P7W4              	100.00%		Q4UGW5              	100.00%
Bootstrap support for L0P7W4 as seed ortholog is 100%.
Bootstrap support for Q4UGW5 as seed ortholog is 100%.

Group of orthologs #594. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:27 T.annulata:20

L0PDG6              	100.00%		Q4UC80              	100.00%
Bootstrap support for L0PDG6 as seed ortholog is 76%.
Bootstrap support for Q4UC80 as seed ortholog is 68%.
Alternative seed ortholog is Q4UEW0 (20 bits away from this cluster)

Group of orthologs #595. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 T.annulata:95

L0P7L9              	100.00%		Q4U8L0              	100.00%
Bootstrap support for L0P7L9 as seed ortholog is 100%.
Bootstrap support for Q4U8L0 as seed ortholog is 100%.

Group of orthologs #596. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 T.annulata:95

L0PAN5              	100.00%		Q4UET2              	100.00%
Bootstrap support for L0PAN5 as seed ortholog is 100%.
Bootstrap support for Q4UET2 as seed ortholog is 100%.

Group of orthologs #597. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 T.annulata:95

L0PH80              	100.00%		Q4UAV9              	100.00%
Bootstrap support for L0PH80 as seed ortholog is 100%.
Bootstrap support for Q4UAV9 as seed ortholog is 100%.

Group of orthologs #598. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 T.annulata:94

L0P7G9              	100.00%		Q4U9H6              	100.00%
Bootstrap support for L0P7G9 as seed ortholog is 100%.
Bootstrap support for Q4U9H6 as seed ortholog is 100%.

Group of orthologs #599. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 T.annulata:94

L0P9F1              	100.00%		Q4UA67              	100.00%
Bootstrap support for L0P9F1 as seed ortholog is 100%.
Bootstrap support for Q4UA67 as seed ortholog is 100%.

Group of orthologs #600. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 T.annulata:94

L0P9Z6              	100.00%		Q4UC53              	100.00%
Bootstrap support for L0P9Z6 as seed ortholog is 100%.
Bootstrap support for Q4UC53 as seed ortholog is 100%.

Group of orthologs #601. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 T.annulata:94

L0PBD5              	100.00%		Q4UHC9              	100.00%
Bootstrap support for L0PBD5 as seed ortholog is 100%.
Bootstrap support for Q4UHC9 as seed ortholog is 100%.

Group of orthologs #602. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 T.annulata:94

L0PH83              	100.00%		Q4UG71              	100.00%
Bootstrap support for L0PH83 as seed ortholog is 100%.
Bootstrap support for Q4UG71 as seed ortholog is 100%.

Group of orthologs #603. Best score 93 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 T.annulata:93

L0P6R0              	100.00%		Q4U8Z0              	100.00%
Bootstrap support for L0P6R0 as seed ortholog is 100%.
Bootstrap support for Q4U8Z0 as seed ortholog is 100%.

Group of orthologs #604. Best score 93 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 T.annulata:42

L0P9T6              	100.00%		Q4UGX4              	100.00%
Bootstrap support for L0P9T6 as seed ortholog is 100%.
Bootstrap support for Q4UGX4 as seed ortholog is 87%.

Group of orthologs #605. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 T.annulata:92

L0P939              	100.00%		Q4UEE7              	100.00%
L0PFG4              	89.33%		
Bootstrap support for L0P939 as seed ortholog is 100%.
Bootstrap support for Q4UEE7 as seed ortholog is 100%.

Group of orthologs #606. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 T.annulata:92

L0P9A7              	100.00%		Q4UDG7              	100.00%
Bootstrap support for L0P9A7 as seed ortholog is 100%.
Bootstrap support for Q4UDG7 as seed ortholog is 100%.

Group of orthologs #607. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:11 T.annulata:92

L0PA28              	100.00%		Q4UE13              	100.00%
Bootstrap support for L0PA28 as seed ortholog is 60%.
Alternative seed ortholog is L0PFR7 (11 bits away from this cluster)
Bootstrap support for Q4UE13 as seed ortholog is 100%.

Group of orthologs #608. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 T.annulata:92

L0PD96              	100.00%		Q4UEP2              	100.00%
Bootstrap support for L0PD96 as seed ortholog is 100%.
Bootstrap support for Q4UEP2 as seed ortholog is 100%.

Group of orthologs #609. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 T.annulata:91

L0PGV2              	100.00%		Q4UFZ5              	100.00%
L0PG40              	68.23%		
Bootstrap support for L0PGV2 as seed ortholog is 100%.
Bootstrap support for Q4UFZ5 as seed ortholog is 100%.

Group of orthologs #610. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 T.annulata:91

L0PDF2              	100.00%		Q4UCP4              	100.00%
Bootstrap support for L0PDF2 as seed ortholog is 100%.
Bootstrap support for Q4UCP4 as seed ortholog is 100%.

Group of orthologs #611. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 T.annulata:91

L0PG81              	100.00%		Q4UBV2              	100.00%
Bootstrap support for L0PG81 as seed ortholog is 100%.
Bootstrap support for Q4UBV2 as seed ortholog is 100%.

Group of orthologs #612. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:91

L0PC70              	100.00%		Q4UIF7              	100.00%
Bootstrap support for L0PC70 as seed ortholog is 98%.
Bootstrap support for Q4UIF7 as seed ortholog is 100%.

Group of orthologs #613. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:23 T.annulata:91

L0PD30              	100.00%		Q4UHZ2              	100.00%
Bootstrap support for L0PD30 as seed ortholog is 78%.
Bootstrap support for Q4UHZ2 as seed ortholog is 100%.

Group of orthologs #614. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:30 T.annulata:91

L0PFB0              	100.00%		Q4UIT2              	100.00%
Bootstrap support for L0PFB0 as seed ortholog is 76%.
Bootstrap support for Q4UIT2 as seed ortholog is 100%.

Group of orthologs #615. Best score 90 bits
Score difference with first non-orthologous sequence - P.jiroveci:90 T.annulata:90

L0P914              	100.00%		Q4UI88              	100.00%
Bootstrap support for L0P914 as seed ortholog is 100%.
Bootstrap support for Q4UI88 as seed ortholog is 100%.

Group of orthologs #616. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 T.annulata:40

L0P948              	100.00%		Q4U8K9              	100.00%
Bootstrap support for L0P948 as seed ortholog is 100%.
Bootstrap support for Q4U8K9 as seed ortholog is 76%.

Group of orthologs #617. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:32 T.annulata:0

L0PAF0              	100.00%		Q4U9C5              	100.00%
Bootstrap support for L0PAF0 as seed ortholog is 86%.
Bootstrap support for Q4U9C5 as seed ortholog is 50%.
Alternative seed ortholog is Q4UEW0 (0 bits away from this cluster)

Group of orthologs #618. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 T.annulata:89

L0P8R5              	100.00%		Q4UE81              	100.00%
Bootstrap support for L0P8R5 as seed ortholog is 100%.
Bootstrap support for Q4UE81 as seed ortholog is 100%.

Group of orthologs #619. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 T.annulata:89

L0P870              	100.00%		Q4UES0              	100.00%
Bootstrap support for L0P870 as seed ortholog is 100%.
Bootstrap support for Q4UES0 as seed ortholog is 100%.

Group of orthologs #620. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 T.annulata:89

L0PE43              	100.00%		Q4UBH6              	100.00%
Bootstrap support for L0PE43 as seed ortholog is 100%.
Bootstrap support for Q4UBH6 as seed ortholog is 100%.

Group of orthologs #621. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 T.annulata:88

L0PD00              	100.00%		Q4U8L1              	100.00%
Bootstrap support for L0PD00 as seed ortholog is 100%.
Bootstrap support for Q4U8L1 as seed ortholog is 100%.

Group of orthologs #622. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 T.annulata:88

L0PEP9              	100.00%		Q4UAG0              	100.00%
Bootstrap support for L0PEP9 as seed ortholog is 100%.
Bootstrap support for Q4UAG0 as seed ortholog is 100%.

Group of orthologs #623. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 T.annulata:88

L0PEV6              	100.00%		Q4UB96              	100.00%
Bootstrap support for L0PEV6 as seed ortholog is 100%.
Bootstrap support for Q4UB96 as seed ortholog is 100%.

Group of orthologs #624. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 T.annulata:87

L0P8G4              	100.00%		Q4UC12              	100.00%
Bootstrap support for L0P8G4 as seed ortholog is 100%.
Bootstrap support for Q4UC12 as seed ortholog is 100%.

Group of orthologs #625. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 T.annulata:87

L0P7E9              	100.00%		Q4UF48              	100.00%
Bootstrap support for L0P7E9 as seed ortholog is 100%.
Bootstrap support for Q4UF48 as seed ortholog is 100%.

Group of orthologs #626. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 T.annulata:87

L0P9T5              	100.00%		Q4UGK3              	100.00%
Bootstrap support for L0P9T5 as seed ortholog is 100%.
Bootstrap support for Q4UGK3 as seed ortholog is 100%.

Group of orthologs #627. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 T.annulata:87

L0PF71              	100.00%		Q4UCK5              	100.00%
Bootstrap support for L0PF71 as seed ortholog is 100%.
Bootstrap support for Q4UCK5 as seed ortholog is 100%.

Group of orthologs #628. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 T.annulata:87

L0P9B0              	100.00%		Q4UIM5              	100.00%
Bootstrap support for L0P9B0 as seed ortholog is 100%.
Bootstrap support for Q4UIM5 as seed ortholog is 100%.

Group of orthologs #629. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 T.annulata:86

L0PAB2              	100.00%		Q4U9B2              	100.00%
Bootstrap support for L0PAB2 as seed ortholog is 100%.
Bootstrap support for Q4U9B2 as seed ortholog is 100%.

Group of orthologs #630. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 T.annulata:86

L0PDX6              	100.00%		Q4U960              	100.00%
Bootstrap support for L0PDX6 as seed ortholog is 100%.
Bootstrap support for Q4U960 as seed ortholog is 100%.

Group of orthologs #631. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 T.annulata:86

L0P6Y2              	100.00%		Q4UIT8              	100.00%
Bootstrap support for L0P6Y2 as seed ortholog is 100%.
Bootstrap support for Q4UIT8 as seed ortholog is 100%.

Group of orthologs #632. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 T.annulata:86

L0PG38              	100.00%		Q4UE14              	100.00%
Bootstrap support for L0PG38 as seed ortholog is 100%.
Bootstrap support for Q4UE14 as seed ortholog is 100%.

Group of orthologs #633. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:20 T.annulata:30

L0PEH9              	100.00%		Q4UFY0              	100.00%
Bootstrap support for L0PEH9 as seed ortholog is 70%.
Alternative seed ortholog is L0PB17 (20 bits away from this cluster)
Bootstrap support for Q4UFY0 as seed ortholog is 75%.

Group of orthologs #634. Best score 85 bits
Score difference with first non-orthologous sequence - P.jiroveci:85 T.annulata:85

L0PA83              	100.00%		Q4UD10              	100.00%
Bootstrap support for L0PA83 as seed ortholog is 100%.
Bootstrap support for Q4UD10 as seed ortholog is 100%.

Group of orthologs #635. Best score 85 bits
Score difference with first non-orthologous sequence - P.jiroveci:85 T.annulata:31

L0P913              	100.00%		Q4UG24              	100.00%
Bootstrap support for L0P913 as seed ortholog is 100%.
Bootstrap support for Q4UG24 as seed ortholog is 74%.
Alternative seed ortholog is Q4U9Q3 (31 bits away from this cluster)

Group of orthologs #636. Best score 85 bits
Score difference with first non-orthologous sequence - P.jiroveci:85 T.annulata:85

L0PEB4              	100.00%		Q4UIE0              	100.00%
Bootstrap support for L0PEB4 as seed ortholog is 100%.
Bootstrap support for Q4UIE0 as seed ortholog is 100%.

Group of orthologs #637. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 T.annulata:84

L0PD60              	100.00%		Q4UGA9              	100.00%
Bootstrap support for L0PD60 as seed ortholog is 100%.
Bootstrap support for Q4UGA9 as seed ortholog is 100%.

Group of orthologs #638. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 T.annulata:83

L0P7D7              	100.00%		Q4UAU5              	100.00%
Bootstrap support for L0P7D7 as seed ortholog is 100%.
Bootstrap support for Q4UAU5 as seed ortholog is 100%.

Group of orthologs #639. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 T.annulata:38

L0PE14              	100.00%		Q4U9J3              	100.00%
Bootstrap support for L0PE14 as seed ortholog is 100%.
Bootstrap support for Q4U9J3 as seed ortholog is 98%.

Group of orthologs #640. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 T.annulata:83

L0PBR1              	100.00%		Q4UE75              	100.00%
Bootstrap support for L0PBR1 as seed ortholog is 100%.
Bootstrap support for Q4UE75 as seed ortholog is 100%.

Group of orthologs #641. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 T.annulata:83

L0PB42              	100.00%		Q4UIN2              	100.00%
Bootstrap support for L0PB42 as seed ortholog is 100%.
Bootstrap support for Q4UIN2 as seed ortholog is 100%.

Group of orthologs #642. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 T.annulata:19

L0P9W7              	100.00%		Q4UA88              	100.00%
Bootstrap support for L0P9W7 as seed ortholog is 100%.
Bootstrap support for Q4UA88 as seed ortholog is 80%.

Group of orthologs #643. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 T.annulata:82

L0P895              	100.00%		Q4UIH8              	100.00%
Bootstrap support for L0P895 as seed ortholog is 100%.
Bootstrap support for Q4UIH8 as seed ortholog is 100%.

Group of orthologs #644. Best score 81 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 T.annulata:81

L0PFZ7              	100.00%		Q4UDK9              	100.00%
Bootstrap support for L0PFZ7 as seed ortholog is 100%.
Bootstrap support for Q4UDK9 as seed ortholog is 100%.

Group of orthologs #645. Best score 81 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 T.annulata:37

L0PFA1              	100.00%		Q4UGV6              	100.00%
Bootstrap support for L0PFA1 as seed ortholog is 100%.
Bootstrap support for Q4UGV6 as seed ortholog is 99%.

Group of orthologs #646. Best score 80 bits
Score difference with first non-orthologous sequence - P.jiroveci:80 T.annulata:80

L0PEG7              	100.00%		Q4UJ39              	100.00%
Bootstrap support for L0PEG7 as seed ortholog is 100%.
Bootstrap support for Q4UJ39 as seed ortholog is 100%.

Group of orthologs #647. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 T.annulata:79

L0PBW9              	100.00%		Q4UAQ9              	100.00%
Bootstrap support for L0PBW9 as seed ortholog is 100%.
Bootstrap support for Q4UAQ9 as seed ortholog is 100%.

Group of orthologs #648. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 T.annulata:79

L0PBS7              	100.00%		Q4UB52              	100.00%
Bootstrap support for L0PBS7 as seed ortholog is 100%.
Bootstrap support for Q4UB52 as seed ortholog is 100%.

Group of orthologs #649. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 T.annulata:79

L0PB34              	100.00%		Q4UDF4              	100.00%
Bootstrap support for L0PB34 as seed ortholog is 100%.
Bootstrap support for Q4UDF4 as seed ortholog is 100%.

Group of orthologs #650. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 T.annulata:79

L0PEV3              	100.00%		Q4UA70              	100.00%
Bootstrap support for L0PEV3 as seed ortholog is 100%.
Bootstrap support for Q4UA70 as seed ortholog is 100%.

Group of orthologs #651. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 T.annulata:78

L0PCM4              	100.00%		Q4U9S0              	100.00%
Bootstrap support for L0PCM4 as seed ortholog is 100%.
Bootstrap support for Q4U9S0 as seed ortholog is 100%.

Group of orthologs #652. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 T.annulata:78

L0P9F5              	100.00%		Q4UD14              	100.00%
Bootstrap support for L0P9F5 as seed ortholog is 100%.
Bootstrap support for Q4UD14 as seed ortholog is 100%.

Group of orthologs #653. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 T.annulata:78

L0PCG3              	100.00%		Q4UAV0              	100.00%
Bootstrap support for L0PCG3 as seed ortholog is 100%.
Bootstrap support for Q4UAV0 as seed ortholog is 100%.

Group of orthologs #654. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 T.annulata:78

L0PBX6              	100.00%		Q4UD34              	100.00%
Bootstrap support for L0PBX6 as seed ortholog is 100%.
Bootstrap support for Q4UD34 as seed ortholog is 100%.

Group of orthologs #655. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 T.annulata:78

L0PFP3              	100.00%		Q4U9S8              	100.00%
Bootstrap support for L0PFP3 as seed ortholog is 100%.
Bootstrap support for Q4U9S8 as seed ortholog is 100%.

Group of orthologs #656. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 T.annulata:77

L0PCQ4              	100.00%		Q4UBU1              	100.00%
Bootstrap support for L0PCQ4 as seed ortholog is 100%.
Bootstrap support for Q4UBU1 as seed ortholog is 100%.

Group of orthologs #657. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 T.annulata:77

L0P9U0              	100.00%		Q4UHI1              	100.00%
Bootstrap support for L0P9U0 as seed ortholog is 100%.
Bootstrap support for Q4UHI1 as seed ortholog is 100%.

Group of orthologs #658. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 T.annulata:77

L0PDW9              	100.00%		Q4UGX1              	100.00%
Bootstrap support for L0PDW9 as seed ortholog is 100%.
Bootstrap support for Q4UGX1 as seed ortholog is 100%.

Group of orthologs #659. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 T.annulata:76

L0P9D9              	100.00%		Q4U9W1              	100.00%
Bootstrap support for L0P9D9 as seed ortholog is 100%.
Bootstrap support for Q4U9W1 as seed ortholog is 100%.

Group of orthologs #660. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 T.annulata:76

L0PCQ5              	100.00%		Q4UF56              	100.00%
Bootstrap support for L0PCQ5 as seed ortholog is 100%.
Bootstrap support for Q4UF56 as seed ortholog is 100%.

Group of orthologs #661. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 T.annulata:76

L0PFT3              	100.00%		Q4UED2              	100.00%
Bootstrap support for L0PFT3 as seed ortholog is 100%.
Bootstrap support for Q4UED2 as seed ortholog is 100%.

Group of orthologs #662. Best score 75 bits
Score difference with first non-orthologous sequence - P.jiroveci:75 T.annulata:75

L0P9H0              	100.00%		Q4U8Y0              	100.00%
Bootstrap support for L0P9H0 as seed ortholog is 100%.
Bootstrap support for Q4U8Y0 as seed ortholog is 100%.

Group of orthologs #663. Best score 75 bits
Score difference with first non-orthologous sequence - P.jiroveci:75 T.annulata:75

L0PA37              	100.00%		Q4UGQ5              	100.00%
Bootstrap support for L0PA37 as seed ortholog is 100%.
Bootstrap support for Q4UGQ5 as seed ortholog is 100%.

Group of orthologs #664. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:74

L0P9L0              	100.00%		Q4U9E5              	100.00%
Bootstrap support for L0P9L0 as seed ortholog is 100%.
Bootstrap support for Q4U9E5 as seed ortholog is 100%.

Group of orthologs #665. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:74

L0PB00              	100.00%		Q4U9U9              	100.00%
Bootstrap support for L0PB00 as seed ortholog is 100%.
Bootstrap support for Q4U9U9 as seed ortholog is 100%.

Group of orthologs #666. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:74

L0PD19              	100.00%		Q4UB53              	100.00%
Bootstrap support for L0PD19 as seed ortholog is 100%.
Bootstrap support for Q4UB53 as seed ortholog is 100%.

Group of orthologs #667. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:4

L0P9Z5              	100.00%		Q4UHR8              	100.00%
Bootstrap support for L0P9Z5 as seed ortholog is 100%.
Bootstrap support for Q4UHR8 as seed ortholog is 52%.
Alternative seed ortholog is Q4UBA4 (4 bits away from this cluster)

Group of orthologs #668. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:74

L0PAT4              	100.00%		Q4UHK3              	100.00%
Bootstrap support for L0PAT4 as seed ortholog is 100%.
Bootstrap support for Q4UHK3 as seed ortholog is 100%.

Group of orthologs #669. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:74

L0PEF7              	100.00%		Q4UHI2              	100.00%
Bootstrap support for L0PEF7 as seed ortholog is 100%.
Bootstrap support for Q4UHI2 as seed ortholog is 100%.

Group of orthologs #670. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 T.annulata:74

L0PFD0              	100.00%		Q4UJ14              	100.00%
Bootstrap support for L0PFD0 as seed ortholog is 100%.
Bootstrap support for Q4UJ14 as seed ortholog is 100%.

Group of orthologs #671. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 T.annulata:73

L0P8R9              	100.00%		Q4UGH4              	100.00%
Bootstrap support for L0P8R9 as seed ortholog is 100%.
Bootstrap support for Q4UGH4 as seed ortholog is 100%.

Group of orthologs #672. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 T.annulata:73

L0PHN0              	100.00%		Q4UBF6              	100.00%
Bootstrap support for L0PHN0 as seed ortholog is 100%.
Bootstrap support for Q4UBF6 as seed ortholog is 100%.

Group of orthologs #673. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 T.annulata:8

L0P7L2              	100.00%		Q4UC78              	100.00%
L0PFZ6              	98.62%		
Bootstrap support for L0P7L2 as seed ortholog is 100%.
Bootstrap support for Q4UC78 as seed ortholog is 54%.
Alternative seed ortholog is Q4UE56 (8 bits away from this cluster)

Group of orthologs #674. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 T.annulata:6

L0PHC2              	100.00%		Q4U8F3              	100.00%
L0P930              	69.10%		
Bootstrap support for L0PHC2 as seed ortholog is 100%.
Bootstrap support for Q4U8F3 as seed ortholog is 69%.
Alternative seed ortholog is Q4UEB5 (6 bits away from this cluster)

Group of orthologs #675. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 T.annulata:71

L0PFK7              	100.00%		Q4U9L6              	100.00%
Bootstrap support for L0PFK7 as seed ortholog is 100%.
Bootstrap support for Q4U9L6 as seed ortholog is 100%.

Group of orthologs #676. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 T.annulata:71

L0PFR9              	100.00%		Q4UBE3              	100.00%
Bootstrap support for L0PFR9 as seed ortholog is 100%.
Bootstrap support for Q4UBE3 as seed ortholog is 100%.

Group of orthologs #677. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 T.annulata:29

L0PC80              	100.00%		Q4UFQ4              	100.00%
Bootstrap support for L0PC80 as seed ortholog is 100%.
Bootstrap support for Q4UFQ4 as seed ortholog is 86%.

Group of orthologs #678. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 T.annulata:71

L0PGR9              	100.00%		Q4UEI4              	100.00%
Bootstrap support for L0PGR9 as seed ortholog is 100%.
Bootstrap support for Q4UEI4 as seed ortholog is 100%.

Group of orthologs #679. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 T.annulata:71

L0PD77              	100.00%		Q4UIZ9              	100.00%
Bootstrap support for L0PD77 as seed ortholog is 100%.
Bootstrap support for Q4UIZ9 as seed ortholog is 100%.

Group of orthologs #680. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:6

L0PDG4              	100.00%		Q4UAB9              	100.00%
Bootstrap support for L0PDG4 as seed ortholog is 100%.
Bootstrap support for Q4UAB9 as seed ortholog is 65%.
Alternative seed ortholog is Q4U8G5 (6 bits away from this cluster)

Group of orthologs #681. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:70

L0PFV9              	100.00%		Q4U8Q8              	100.00%
Bootstrap support for L0PFV9 as seed ortholog is 100%.
Bootstrap support for Q4U8Q8 as seed ortholog is 100%.

Group of orthologs #682. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:70

L0PG46              	100.00%		Q4U951              	100.00%
Bootstrap support for L0PG46 as seed ortholog is 100%.
Bootstrap support for Q4U951 as seed ortholog is 100%.

Group of orthologs #683. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:70

L0P9K1              	100.00%		Q4UHZ4              	100.00%
Bootstrap support for L0P9K1 as seed ortholog is 100%.
Bootstrap support for Q4UHZ4 as seed ortholog is 100%.

Group of orthologs #684. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:70

L0PGF4              	100.00%		Q4UGF9              	100.00%
Bootstrap support for L0PGF4 as seed ortholog is 100%.
Bootstrap support for Q4UGF9 as seed ortholog is 100%.

Group of orthologs #685. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:70

L0PE35              	100.00%		Q4UJ20              	100.00%
Bootstrap support for L0PE35 as seed ortholog is 100%.
Bootstrap support for Q4UJ20 as seed ortholog is 100%.

Group of orthologs #686. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 T.annulata:70

L0PG83              	100.00%		Q4UHS3              	100.00%
Bootstrap support for L0PG83 as seed ortholog is 100%.
Bootstrap support for Q4UHS3 as seed ortholog is 100%.

Group of orthologs #687. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 T.annulata:69

L0P848              	100.00%		Q4UHF5              	100.00%
L0P867              	91.99%		
Bootstrap support for L0P848 as seed ortholog is 100%.
Bootstrap support for Q4UHF5 as seed ortholog is 100%.

Group of orthologs #688. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 T.annulata:69

L0PGM7              	100.00%		Q4UEW8              	100.00%
L0PGY6              	95.23%		
Bootstrap support for L0PGM7 as seed ortholog is 100%.
Bootstrap support for Q4UEW8 as seed ortholog is 100%.

Group of orthologs #689. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 T.annulata:69

L0PIN1              	100.00%		Q4UJ37              	100.00%
L0PDW7              	49.17%		
Bootstrap support for L0PIN1 as seed ortholog is 100%.
Bootstrap support for Q4UJ37 as seed ortholog is 100%.

Group of orthologs #690. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 T.annulata:69

L0PCX6              	100.00%		Q4UHK9              	100.00%
Bootstrap support for L0PCX6 as seed ortholog is 100%.
Bootstrap support for Q4UHK9 as seed ortholog is 100%.

Group of orthologs #691. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 T.annulata:69

L0PDF0              	100.00%		Q4UJ42              	100.00%
Bootstrap support for L0PDF0 as seed ortholog is 100%.
Bootstrap support for Q4UJ42 as seed ortholog is 100%.

Group of orthologs #692. Best score 68 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 T.annulata:21

L0P9P5              	100.00%		Q4UEL8              	100.00%
                    	       		Q4UDS7              	9.12%
Bootstrap support for L0P9P5 as seed ortholog is 100%.
Bootstrap support for Q4UEL8 as seed ortholog is 78%.

Group of orthologs #693. Best score 68 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 T.annulata:68

L0P881              	100.00%		Q4UA34              	100.00%
Bootstrap support for L0P881 as seed ortholog is 100%.
Bootstrap support for Q4UA34 as seed ortholog is 100%.

Group of orthologs #694. Best score 68 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 T.annulata:68

L0PB99              	100.00%		Q4UG58              	100.00%
Bootstrap support for L0PB99 as seed ortholog is 100%.
Bootstrap support for Q4UG58 as seed ortholog is 100%.

Group of orthologs #695. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 T.annulata:67

L0PF86              	100.00%		Q4UF70              	100.00%
L0PC10              	87.59%		
Bootstrap support for L0PF86 as seed ortholog is 100%.
Bootstrap support for Q4UF70 as seed ortholog is 100%.

Group of orthologs #696. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 T.annulata:67

L0P8G7              	100.00%		Q4U9Y8              	100.00%
Bootstrap support for L0P8G7 as seed ortholog is 100%.
Bootstrap support for Q4U9Y8 as seed ortholog is 100%.

Group of orthologs #697. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 T.annulata:66

L0PDS3              	100.00%		Q4UEP8              	100.00%
L0P8A5              	19.23%		
L0PBK7              	18.78%		
Bootstrap support for L0PDS3 as seed ortholog is 100%.
Bootstrap support for Q4UEP8 as seed ortholog is 100%.

Group of orthologs #698. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 T.annulata:66

L0PBT0              	100.00%		Q4UBF1              	100.00%
Bootstrap support for L0PBT0 as seed ortholog is 100%.
Bootstrap support for Q4UBF1 as seed ortholog is 100%.

Group of orthologs #699. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 T.annulata:66

L0P9R5              	100.00%		Q4UDQ7              	100.00%
Bootstrap support for L0P9R5 as seed ortholog is 100%.
Bootstrap support for Q4UDQ7 as seed ortholog is 100%.

Group of orthologs #700. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 T.annulata:66

L0PFK1              	100.00%		Q4UE58              	100.00%
Bootstrap support for L0PFK1 as seed ortholog is 100%.
Bootstrap support for Q4UE58 as seed ortholog is 100%.

Group of orthologs #701. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 T.annulata:66

L0PEF8              	100.00%		Q4UG11              	100.00%
Bootstrap support for L0PEF8 as seed ortholog is 100%.
Bootstrap support for Q4UG11 as seed ortholog is 100%.

Group of orthologs #702. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 T.annulata:65

L0PBD3              	100.00%		Q4U9Y1              	100.00%
L0PCE5              	100.00%		Q4UEE8              	100.00%
Bootstrap support for L0PBD3 as seed ortholog is 100%.
Bootstrap support for L0PCE5 as seed ortholog is 100%.
Bootstrap support for Q4U9Y1 as seed ortholog is 100%.
Bootstrap support for Q4UEE8 as seed ortholog is 100%.

Group of orthologs #703. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:13 T.annulata:11

L0PDP9              	100.00%		Q4U962              	100.00%
Bootstrap support for L0PDP9 as seed ortholog is 69%.
Alternative seed ortholog is L0PEW9 (13 bits away from this cluster)
Bootstrap support for Q4U962 as seed ortholog is 63%.
Alternative seed ortholog is Q4UAD8 (11 bits away from this cluster)

Group of orthologs #704. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 T.annulata:65

L0P8U3              	100.00%		Q4UE99              	100.00%
Bootstrap support for L0P8U3 as seed ortholog is 100%.
Bootstrap support for Q4UE99 as seed ortholog is 100%.

Group of orthologs #705. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 T.annulata:65

L0PE32              	100.00%		Q4U9V3              	100.00%
Bootstrap support for L0PE32 as seed ortholog is 100%.
Bootstrap support for Q4U9V3 as seed ortholog is 100%.

Group of orthologs #706. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 T.annulata:64

L0PFQ6              	100.00%		Q4U8U5              	100.00%
Bootstrap support for L0PFQ6 as seed ortholog is 100%.
Bootstrap support for Q4U8U5 as seed ortholog is 100%.

Group of orthologs #707. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 T.annulata:64

L0PGW6              	100.00%		Q4UA63              	100.00%
Bootstrap support for L0PGW6 as seed ortholog is 100%.
Bootstrap support for Q4UA63 as seed ortholog is 100%.

Group of orthologs #708. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:24 T.annulata:64

L0PAT8              	100.00%		Q4UIG5              	100.00%
Bootstrap support for L0PAT8 as seed ortholog is 80%.
Bootstrap support for Q4UIG5 as seed ortholog is 100%.

Group of orthologs #709. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 T.annulata:63

L0P995              	100.00%		Q4UBS8              	100.00%
Bootstrap support for L0P995 as seed ortholog is 100%.
Bootstrap support for Q4UBS8 as seed ortholog is 100%.

Group of orthologs #710. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 T.annulata:63

L0PA43              	100.00%		Q4UE26              	100.00%
Bootstrap support for L0PA43 as seed ortholog is 100%.
Bootstrap support for Q4UE26 as seed ortholog is 100%.

Group of orthologs #711. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 T.annulata:63

L0PC24              	100.00%		Q4UDQ8              	100.00%
Bootstrap support for L0PC24 as seed ortholog is 100%.
Bootstrap support for Q4UDQ8 as seed ortholog is 100%.

Group of orthologs #712. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 T.annulata:62

L0PGF8              	100.00%		Q4U976              	100.00%
Bootstrap support for L0PGF8 as seed ortholog is 100%.
Bootstrap support for Q4U976 as seed ortholog is 100%.

Group of orthologs #713. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 T.annulata:62

L0PFN7              	100.00%		Q4UA37              	100.00%
Bootstrap support for L0PFN7 as seed ortholog is 100%.
Bootstrap support for Q4UA37 as seed ortholog is 100%.

Group of orthologs #714. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 T.annulata:62

L0PGL1              	100.00%		Q4UA86              	100.00%
Bootstrap support for L0PGL1 as seed ortholog is 100%.
Bootstrap support for Q4UA86 as seed ortholog is 100%.

Group of orthologs #715. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:4 T.annulata:5

L0P9X1              	100.00%		Q4U8R7              	100.00%
Bootstrap support for L0P9X1 as seed ortholog is 47%.
Alternative seed ortholog is L0PF99 (4 bits away from this cluster)
Bootstrap support for Q4U8R7 as seed ortholog is 44%.
Alternative seed ortholog is Q962B5 (5 bits away from this cluster)

Group of orthologs #716. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 T.annulata:61

L0P9A5              	100.00%		Q4U9J5              	100.00%
Bootstrap support for L0P9A5 as seed ortholog is 100%.
Bootstrap support for Q4U9J5 as seed ortholog is 100%.

Group of orthologs #717. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 T.annulata:61

L0P9A1              	100.00%		Q4UA02              	100.00%
Bootstrap support for L0P9A1 as seed ortholog is 100%.
Bootstrap support for Q4UA02 as seed ortholog is 100%.

Group of orthologs #718. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 T.annulata:61

L0PCA9              	100.00%		Q4UDD2              	100.00%
Bootstrap support for L0PCA9 as seed ortholog is 100%.
Bootstrap support for Q4UDD2 as seed ortholog is 100%.

Group of orthologs #719. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 T.annulata:60

L0PB39              	100.00%		Q4U8Q3              	100.00%
Bootstrap support for L0PB39 as seed ortholog is 100%.
Bootstrap support for Q4U8Q3 as seed ortholog is 100%.

Group of orthologs #720. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 T.annulata:60

L0PCY1              	100.00%		Q4U9D1              	100.00%
Bootstrap support for L0PCY1 as seed ortholog is 100%.
Bootstrap support for Q4U9D1 as seed ortholog is 100%.

Group of orthologs #721. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 T.annulata:60

L0PEB3              	100.00%		Q4UBA2              	100.00%
Bootstrap support for L0PEB3 as seed ortholog is 100%.
Bootstrap support for Q4UBA2 as seed ortholog is 100%.

Group of orthologs #722. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 T.annulata:59

L0P7C7              	100.00%		Q4UB72              	100.00%
Bootstrap support for L0P7C7 as seed ortholog is 100%.
Bootstrap support for Q4UB72 as seed ortholog is 100%.

Group of orthologs #723. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 T.annulata:59

L0PA07              	100.00%		Q4UC34              	100.00%
Bootstrap support for L0PA07 as seed ortholog is 100%.
Bootstrap support for Q4UC34 as seed ortholog is 100%.

Group of orthologs #724. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 T.annulata:59

L0P7V4              	100.00%		Q4UGG8              	100.00%
Bootstrap support for L0P7V4 as seed ortholog is 100%.
Bootstrap support for Q4UGG8 as seed ortholog is 100%.

Group of orthologs #725. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 T.annulata:59

L0PEY1              	100.00%		Q4UGE5              	100.00%
Bootstrap support for L0PEY1 as seed ortholog is 100%.
Bootstrap support for Q4UGE5 as seed ortholog is 100%.

Group of orthologs #726. Best score 58 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 T.annulata:58

L0P8J7              	100.00%		Q4UAZ3              	100.00%
Bootstrap support for L0P8J7 as seed ortholog is 100%.
Bootstrap support for Q4UAZ3 as seed ortholog is 100%.

Group of orthologs #727. Best score 58 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 T.annulata:58

L0P990              	100.00%		Q4UAF9              	100.00%
Bootstrap support for L0P990 as seed ortholog is 100%.
Bootstrap support for Q4UAF9 as seed ortholog is 100%.

Group of orthologs #728. Best score 58 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 T.annulata:58

L0PFM9              	100.00%		Q4UG27              	100.00%
Bootstrap support for L0PFM9 as seed ortholog is 100%.
Bootstrap support for Q4UG27 as seed ortholog is 100%.

Group of orthologs #729. Best score 57 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 T.annulata:57

L0P724              	100.00%		Q4UD42              	100.00%
Bootstrap support for L0P724 as seed ortholog is 100%.
Bootstrap support for Q4UD42 as seed ortholog is 100%.

Group of orthologs #730. Best score 57 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 T.annulata:57

L0PCX5              	100.00%		Q4UI93              	100.00%
Bootstrap support for L0PCX5 as seed ortholog is 100%.
Bootstrap support for Q4UI93 as seed ortholog is 100%.

Group of orthologs #731. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 T.annulata:56

L0P7K1              	100.00%		Q4UAJ0              	100.00%
Bootstrap support for L0P7K1 as seed ortholog is 100%.
Bootstrap support for Q4UAJ0 as seed ortholog is 100%.

Group of orthologs #732. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 T.annulata:56

L0P8J6              	100.00%		Q4UGP6              	100.00%
Bootstrap support for L0P8J6 as seed ortholog is 100%.
Bootstrap support for Q4UGP6 as seed ortholog is 100%.

Group of orthologs #733. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 T.annulata:56

L0PBK9              	100.00%		Q4UDV7              	100.00%
Bootstrap support for L0PBK9 as seed ortholog is 100%.
Bootstrap support for Q4UDV7 as seed ortholog is 100%.

Group of orthologs #734. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 T.annulata:56

L0PE61              	100.00%		Q4UJ29              	100.00%
Bootstrap support for L0PE61 as seed ortholog is 100%.
Bootstrap support for Q4UJ29 as seed ortholog is 100%.

Group of orthologs #735. Best score 55 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 T.annulata:55

L0PEQ9              	100.00%		Q4UEH1              	100.00%
Bootstrap support for L0PEQ9 as seed ortholog is 100%.
Bootstrap support for Q4UEH1 as seed ortholog is 100%.

Group of orthologs #736. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 T.annulata:54

L0PBQ7              	100.00%		Q4UDT3              	100.00%
Bootstrap support for L0PBQ7 as seed ortholog is 100%.
Bootstrap support for Q4UDT3 as seed ortholog is 100%.

Group of orthologs #737. Best score 53 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 T.annulata:53

L0PFC3              	100.00%		Q4U8M4              	100.00%
Bootstrap support for L0PFC3 as seed ortholog is 100%.
Bootstrap support for Q4U8M4 as seed ortholog is 100%.

Group of orthologs #738. Best score 52 bits
Score difference with first non-orthologous sequence - P.jiroveci:52 T.annulata:52

L0PB63              	100.00%		Q4UEZ3              	100.00%
Bootstrap support for L0PB63 as seed ortholog is 100%.
Bootstrap support for Q4UEZ3 as seed ortholog is 100%.

Group of orthologs #739. Best score 52 bits
Score difference with first non-orthologous sequence - P.jiroveci:52 T.annulata:52

L0PCX0              	100.00%		Q4UGD3              	100.00%
Bootstrap support for L0PCX0 as seed ortholog is 100%.
Bootstrap support for Q4UGD3 as seed ortholog is 100%.

Group of orthologs #740. Best score 51 bits
Score difference with first non-orthologous sequence - P.jiroveci:51 T.annulata:51

L0PBD2              	100.00%		Q4UG20              	100.00%
Bootstrap support for L0PBD2 as seed ortholog is 100%.
Bootstrap support for Q4UG20 as seed ortholog is 100%.

Group of orthologs #741. Best score 51 bits
Score difference with first non-orthologous sequence - P.jiroveci:51 T.annulata:1

L0PFM7              	100.00%		Q4UC69              	100.00%
Bootstrap support for L0PFM7 as seed ortholog is 100%.
Bootstrap support for Q4UC69 as seed ortholog is 50%.
Alternative seed ortholog is Q4UH26 (1 bits away from this cluster)

Group of orthologs #742. Best score 51 bits
Score difference with first non-orthologous sequence - P.jiroveci:51 T.annulata:51

L0PEE1              	100.00%		Q4UE82              	100.00%
Bootstrap support for L0PEE1 as seed ortholog is 100%.
Bootstrap support for Q4UE82 as seed ortholog is 100%.

Group of orthologs #743. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 T.annulata:50

L0PAJ4              	100.00%		Q4UBW1              	100.00%
Bootstrap support for L0PAJ4 as seed ortholog is 100%.
Bootstrap support for Q4UBW1 as seed ortholog is 100%.

Group of orthologs #744. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 T.annulata:50

L0PFP4              	100.00%		Q4UBJ8              	100.00%
Bootstrap support for L0PFP4 as seed ortholog is 100%.
Bootstrap support for Q4UBJ8 as seed ortholog is 100%.

Group of orthologs #745. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 T.annulata:50

L0PFJ1              	100.00%		Q4UE55              	100.00%
Bootstrap support for L0PFJ1 as seed ortholog is 100%.
Bootstrap support for Q4UE55 as seed ortholog is 100%.

Group of orthologs #746. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 T.annulata:50

L0PEC4              	100.00%		Q4UIA9              	100.00%
Bootstrap support for L0PEC4 as seed ortholog is 100%.
Bootstrap support for Q4UIA9 as seed ortholog is 100%.

Group of orthologs #747. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 T.annulata:50

L0PE48              	100.00%		Q4UII7              	100.00%
Bootstrap support for L0PE48 as seed ortholog is 100%.
Bootstrap support for Q4UII7 as seed ortholog is 100%.

Group of orthologs #748. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:49

L0P8G6              	100.00%		Q4U979              	100.00%
                    	       		Q4U978              	53.28%
Bootstrap support for L0P8G6 as seed ortholog is 100%.
Bootstrap support for Q4U979 as seed ortholog is 100%.

Group of orthologs #749. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:49

L0PAE2              	100.00%		Q4UC70              	100.00%
Bootstrap support for L0PAE2 as seed ortholog is 100%.
Bootstrap support for Q4UC70 as seed ortholog is 100%.

Group of orthologs #750. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:49

L0P883              	100.00%		Q4UE61              	100.00%
Bootstrap support for L0P883 as seed ortholog is 100%.
Bootstrap support for Q4UE61 as seed ortholog is 100%.

Group of orthologs #751. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:4

L0PB27              	100.00%		Q4UC24              	100.00%
Bootstrap support for L0PB27 as seed ortholog is 100%.
Bootstrap support for Q4UC24 as seed ortholog is 36%.
Alternative seed ortholog is Q4UID3 (4 bits away from this cluster)

Group of orthologs #752. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:49

L0PEZ7              	100.00%		Q4UE17              	100.00%
Bootstrap support for L0PEZ7 as seed ortholog is 100%.
Bootstrap support for Q4UE17 as seed ortholog is 100%.

Group of orthologs #753. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 T.annulata:49

L0PGA7              	100.00%		Q4UF25              	100.00%
Bootstrap support for L0PGA7 as seed ortholog is 100%.
Bootstrap support for Q4UF25 as seed ortholog is 100%.

Group of orthologs #754. Best score 47 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 T.annulata:47

L0P9T3              	100.00%		Q4UDB7              	100.00%
Bootstrap support for L0P9T3 as seed ortholog is 100%.
Bootstrap support for Q4UDB7 as seed ortholog is 100%.

Group of orthologs #755. Best score 47 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 T.annulata:47

L0PE69              	100.00%		Q4UDZ7              	100.00%
Bootstrap support for L0PE69 as seed ortholog is 100%.
Bootstrap support for Q4UDZ7 as seed ortholog is 100%.

Group of orthologs #756. Best score 47 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 T.annulata:47

L0PAD8              	100.00%		Q4UIC2              	100.00%
Bootstrap support for L0PAD8 as seed ortholog is 100%.
Bootstrap support for Q4UIC2 as seed ortholog is 100%.

Group of orthologs #757. Best score 46 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 T.annulata:46

L0P7T7              	100.00%		Q4UD22              	100.00%
Bootstrap support for L0P7T7 as seed ortholog is 100%.
Bootstrap support for Q4UD22 as seed ortholog is 100%.

Group of orthologs #758. Best score 45 bits
Score difference with first non-orthologous sequence - P.jiroveci:45 T.annulata:45

L0PAS9              	100.00%		Q4UF65              	100.00%
Bootstrap support for L0PAS9 as seed ortholog is 100%.
Bootstrap support for Q4UF65 as seed ortholog is 100%.

Group of orthologs #759. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 T.annulata:44

L0PBB9              	100.00%		Q4UF95              	100.00%
Bootstrap support for L0PBB9 as seed ortholog is 100%.
Bootstrap support for Q4UF95 as seed ortholog is 100%.

Group of orthologs #760. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 T.annulata:44

L0PFD5              	100.00%		Q4UFP3              	100.00%
Bootstrap support for L0PFD5 as seed ortholog is 100%.
Bootstrap support for Q4UFP3 as seed ortholog is 100%.

Group of orthologs #761. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 T.annulata:44

L0PD92              	100.00%		Q4UI94              	100.00%
Bootstrap support for L0PD92 as seed ortholog is 100%.
Bootstrap support for Q4UI94 as seed ortholog is 100%.