###################################
215 groups of orthologs
242 in-paralogs from P.jiroveci
263 in-paralogs from P.kodakaraensis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 781 bits
Score difference with first non-orthologous sequence - P.jiroveci:377 P.kodakaraensis:781

L0PG77              	100.00%		Q5JE32              	100.00%
Bootstrap support for L0PG77 as seed ortholog is 100%.
Bootstrap support for Q5JE32 as seed ortholog is 100%.

Group of orthologs #2. Best score 613 bits
Score difference with first non-orthologous sequence - P.jiroveci:613 P.kodakaraensis:613

L0PB43              	100.00%		Q5JE33              	100.00%
L0PB90              	6.99%		
Bootstrap support for L0PB43 as seed ortholog is 100%.
Bootstrap support for Q5JE33 as seed ortholog is 100%.

Group of orthologs #3. Best score 576 bits
Score difference with first non-orthologous sequence - P.jiroveci:469 P.kodakaraensis:576

L0PH89              	100.00%		Q5JIR3              	100.00%
Bootstrap support for L0PH89 as seed ortholog is 100%.
Bootstrap support for Q5JIR3 as seed ortholog is 100%.

Group of orthologs #4. Best score 537 bits
Score difference with first non-orthologous sequence - P.jiroveci:473 P.kodakaraensis:537

L0PDF1              	100.00%		Q5JDX6              	100.00%
Bootstrap support for L0PDF1 as seed ortholog is 100%.
Bootstrap support for Q5JDX6 as seed ortholog is 100%.

Group of orthologs #5. Best score 508 bits
Score difference with first non-orthologous sequence - P.jiroveci:508 P.kodakaraensis:508

L0PC65              	100.00%		Q5JGF1              	100.00%
Bootstrap support for L0PC65 as seed ortholog is 100%.
Bootstrap support for Q5JGF1 as seed ortholog is 100%.

Group of orthologs #6. Best score 457 bits
Score difference with first non-orthologous sequence - P.jiroveci:178 P.kodakaraensis:457

L0PBA5              	100.00%		Q5JFZ4              	100.00%
Bootstrap support for L0PBA5 as seed ortholog is 99%.
Bootstrap support for Q5JFZ4 as seed ortholog is 100%.

Group of orthologs #7. Best score 436 bits
Score difference with first non-orthologous sequence - P.jiroveci:350 P.kodakaraensis:436

L0P915              	100.00%		Q8NKR7              	100.00%
Bootstrap support for L0P915 as seed ortholog is 99%.
Bootstrap support for Q8NKR7 as seed ortholog is 100%.

Group of orthologs #8. Best score 418 bits
Score difference with first non-orthologous sequence - P.jiroveci:418 P.kodakaraensis:418

L0PET9              	100.00%		O93623              	100.00%
Bootstrap support for L0PET9 as seed ortholog is 100%.
Bootstrap support for O93623 as seed ortholog is 100%.

Group of orthologs #9. Best score 406 bits
Score difference with first non-orthologous sequence - P.jiroveci:406 P.kodakaraensis:406

L0PFF9              	100.00%		Q5JIP3              	100.00%
Bootstrap support for L0PFF9 as seed ortholog is 100%.
Bootstrap support for Q5JIP3 as seed ortholog is 100%.

Group of orthologs #10. Best score 397 bits
Score difference with first non-orthologous sequence - P.jiroveci:251 P.kodakaraensis:397

L0PGH3              	100.00%		Q5JDF4              	100.00%
Bootstrap support for L0PGH3 as seed ortholog is 99%.
Bootstrap support for Q5JDF4 as seed ortholog is 100%.

Group of orthologs #11. Best score 389 bits
Score difference with first non-orthologous sequence - P.jiroveci:20 P.kodakaraensis:389

L0P976              	100.00%		P61111              	100.00%
                    	       		Q52500              	71.12%
Bootstrap support for L0P976 as seed ortholog is 70%.
Alternative seed ortholog is L0P945 (20 bits away from this cluster)
Bootstrap support for P61111 as seed ortholog is 100%.

Group of orthologs #12. Best score 366 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.kodakaraensis:366

L0PBQ6              	100.00%		Q5JJ31              	100.00%
Bootstrap support for L0PBQ6 as seed ortholog is 49%.
Alternative seed ortholog is L0PCD8 (66 bits away from this cluster)
Bootstrap support for Q5JJ31 as seed ortholog is 100%.

Group of orthologs #13. Best score 361 bits
Score difference with first non-orthologous sequence - P.jiroveci:361 P.kodakaraensis:361

L0PA45              	100.00%		Q5JID8              	100.00%
Bootstrap support for L0PA45 as seed ortholog is 100%.
Bootstrap support for Q5JID8 as seed ortholog is 100%.

Group of orthologs #14. Best score 348 bits
Score difference with first non-orthologous sequence - P.jiroveci:43 P.kodakaraensis:348

L0PD31              	100.00%		Q5JIT1              	100.00%
Bootstrap support for L0PD31 as seed ortholog is 79%.
Bootstrap support for Q5JIT1 as seed ortholog is 100%.

Group of orthologs #15. Best score 334 bits
Score difference with first non-orthologous sequence - P.jiroveci:334 P.kodakaraensis:255

L0PAS8              	100.00%		Q5JH71              	100.00%
Bootstrap support for L0PAS8 as seed ortholog is 100%.
Bootstrap support for Q5JH71 as seed ortholog is 100%.

Group of orthologs #16. Best score 333 bits
Score difference with first non-orthologous sequence - P.jiroveci:333 P.kodakaraensis:175

L0PFN9              	100.00%		Q5JJC8              	100.00%
L0PEF0              	19.79%		
Bootstrap support for L0PFN9 as seed ortholog is 100%.
Bootstrap support for Q5JJC8 as seed ortholog is 100%.

Group of orthologs #17. Best score 330 bits
Score difference with first non-orthologous sequence - P.jiroveci:10 P.kodakaraensis:330

L0PGL8              	100.00%		Q5JJA2              	100.00%
Bootstrap support for L0PGL8 as seed ortholog is 66%.
Alternative seed ortholog is L0PBL6 (10 bits away from this cluster)
Bootstrap support for Q5JJA2 as seed ortholog is 100%.

Group of orthologs #18. Best score 314 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 P.kodakaraensis:314

L0P7M4              	100.00%		Q5JIR2              	100.00%
L0PH62              	64.20%		
Bootstrap support for L0P7M4 as seed ortholog is 100%.
Bootstrap support for Q5JIR2 as seed ortholog is 100%.

Group of orthologs #19. Best score 312 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 P.kodakaraensis:312

L0PDB3              	100.00%		Q5JGN7              	100.00%
L0PCU4              	13.38%		
Bootstrap support for L0PDB3 as seed ortholog is 97%.
Bootstrap support for Q5JGN7 as seed ortholog is 100%.

Group of orthologs #20. Best score 310 bits
Score difference with first non-orthologous sequence - P.jiroveci:310 P.kodakaraensis:310

L0PDJ1              	100.00%		Q5JED2              	100.00%
Bootstrap support for L0PDJ1 as seed ortholog is 100%.
Bootstrap support for Q5JED2 as seed ortholog is 100%.

Group of orthologs #21. Best score 291 bits
Score difference with first non-orthologous sequence - P.jiroveci:291 P.kodakaraensis:291

L0PAQ1              	100.00%		Q5JFM1              	100.00%
Bootstrap support for L0PAQ1 as seed ortholog is 100%.
Bootstrap support for Q5JFM1 as seed ortholog is 100%.

Group of orthologs #22. Best score 285 bits
Score difference with first non-orthologous sequence - P.jiroveci:285 P.kodakaraensis:285

L0P7N3              	100.00%		Q5JFM0              	100.00%
Bootstrap support for L0P7N3 as seed ortholog is 100%.
Bootstrap support for Q5JFM0 as seed ortholog is 100%.

Group of orthologs #23. Best score 281 bits
Score difference with first non-orthologous sequence - P.jiroveci:281 P.kodakaraensis:281

L0P971              	100.00%		Q5JIQ2              	100.00%
Bootstrap support for L0P971 as seed ortholog is 100%.
Bootstrap support for Q5JIQ2 as seed ortholog is 100%.

Group of orthologs #24. Best score 280 bits
Score difference with first non-orthologous sequence - P.jiroveci:280 P.kodakaraensis:280

L0P9J7              	100.00%		Q5JEY0              	100.00%
Bootstrap support for L0P9J7 as seed ortholog is 100%.
Bootstrap support for Q5JEY0 as seed ortholog is 100%.

Group of orthologs #25. Best score 273 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.kodakaraensis:273

L0PAU1              	100.00%		Q5JE75              	100.00%
Bootstrap support for L0PAU1 as seed ortholog is 88%.
Bootstrap support for Q5JE75 as seed ortholog is 100%.

Group of orthologs #26. Best score 269 bits
Score difference with first non-orthologous sequence - P.jiroveci:269 P.kodakaraensis:269

L0PFP2              	100.00%		Q5JET4              	100.00%
L0PDH7              	6.53%		
Bootstrap support for L0PFP2 as seed ortholog is 100%.
Bootstrap support for Q5JET4 as seed ortholog is 100%.

Group of orthologs #27. Best score 269 bits
Score difference with first non-orthologous sequence - P.jiroveci:169 P.kodakaraensis:269

L0P6Z0              	100.00%		Q5JJ98              	100.00%
Bootstrap support for L0P6Z0 as seed ortholog is 99%.
Bootstrap support for Q5JJ98 as seed ortholog is 100%.

Group of orthologs #28. Best score 265 bits
Score difference with first non-orthologous sequence - P.jiroveci:98 P.kodakaraensis:265

L0P7R1              	100.00%		Q52428              	100.00%
Bootstrap support for L0P7R1 as seed ortholog is 98%.
Bootstrap support for Q52428 as seed ortholog is 100%.

Group of orthologs #29. Best score 258 bits
Score difference with first non-orthologous sequence - P.jiroveci:258 P.kodakaraensis:258

L0P8W6              	100.00%		Q5JJE8              	100.00%
Bootstrap support for L0P8W6 as seed ortholog is 100%.
Bootstrap support for Q5JJE8 as seed ortholog is 100%.

Group of orthologs #30. Best score 255 bits
Score difference with first non-orthologous sequence - P.jiroveci:255 P.kodakaraensis:255

L0PAT1              	100.00%		Q5JIA4              	100.00%
Bootstrap support for L0PAT1 as seed ortholog is 100%.
Bootstrap support for Q5JIA4 as seed ortholog is 100%.

Group of orthologs #31. Best score 252 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 P.kodakaraensis:252

L0PEL0              	100.00%		Q5JHC1              	100.00%
Bootstrap support for L0PEL0 as seed ortholog is 92%.
Bootstrap support for Q5JHC1 as seed ortholog is 100%.

Group of orthologs #32. Best score 251 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 P.kodakaraensis:251

L0PB35              	100.00%		Q5JDL3              	100.00%
Bootstrap support for L0PB35 as seed ortholog is 99%.
Bootstrap support for Q5JDL3 as seed ortholog is 100%.

Group of orthologs #33. Best score 250 bits
Score difference with first non-orthologous sequence - P.jiroveci:190 P.kodakaraensis:250

L0PC44              	100.00%		Q5JD45              	100.00%
Bootstrap support for L0PC44 as seed ortholog is 100%.
Bootstrap support for Q5JD45 as seed ortholog is 100%.

Group of orthologs #34. Best score 248 bits
Score difference with first non-orthologous sequence - P.jiroveci:26 P.kodakaraensis:248

L0PC64              	100.00%		Q5JFZ6              	100.00%
L0P7V6              	34.13%		
Bootstrap support for L0PC64 as seed ortholog is 79%.
Bootstrap support for Q5JFZ6 as seed ortholog is 100%.

Group of orthologs #35. Best score 247 bits
Score difference with first non-orthologous sequence - P.jiroveci:34 P.kodakaraensis:247

L0PBE4              	100.00%		Q5JFZ3              	100.00%
Bootstrap support for L0PBE4 as seed ortholog is 56%.
Alternative seed ortholog is L0PBP8 (34 bits away from this cluster)
Bootstrap support for Q5JFZ3 as seed ortholog is 100%.

Group of orthologs #36. Best score 227 bits
Score difference with first non-orthologous sequence - P.jiroveci:227 P.kodakaraensis:227

L0PEE3              	100.00%		Q76I93              	100.00%
Bootstrap support for L0PEE3 as seed ortholog is 100%.
Bootstrap support for Q76I93 as seed ortholog is 100%.

Group of orthologs #37. Best score 225 bits
Score difference with first non-orthologous sequence - P.jiroveci:19 P.kodakaraensis:225

L0PBF6              	100.00%		Q5JHP3              	100.00%
Bootstrap support for L0PBF6 as seed ortholog is 65%.
Alternative seed ortholog is L0PAA4 (19 bits away from this cluster)
Bootstrap support for Q5JHP3 as seed ortholog is 100%.

Group of orthologs #38. Best score 225 bits
Score difference with first non-orthologous sequence - P.jiroveci:225 P.kodakaraensis:225

L0PER3              	100.00%		Q76KA8              	100.00%
Bootstrap support for L0PER3 as seed ortholog is 100%.
Bootstrap support for Q76KA8 as seed ortholog is 100%.

Group of orthologs #39. Best score 219 bits
Score difference with first non-orthologous sequence - P.jiroveci:219 P.kodakaraensis:219

L0P9D4              	100.00%		Q5JDJ0              	100.00%
Bootstrap support for L0P9D4 as seed ortholog is 100%.
Bootstrap support for Q5JDJ0 as seed ortholog is 100%.

Group of orthologs #40. Best score 217 bits
Score difference with first non-orthologous sequence - P.jiroveci:217 P.kodakaraensis:99

L0PDU5              	100.00%		Q5JDF6              	100.00%
Bootstrap support for L0PDU5 as seed ortholog is 100%.
Bootstrap support for Q5JDF6 as seed ortholog is 98%.

Group of orthologs #41. Best score 213 bits
Score difference with first non-orthologous sequence - P.jiroveci:149 P.kodakaraensis:213

L0PID0              	100.00%		Q5JDH2              	100.00%
Bootstrap support for L0PID0 as seed ortholog is 100%.
Bootstrap support for Q5JDH2 as seed ortholog is 100%.

Group of orthologs #42. Best score 212 bits
Score difference with first non-orthologous sequence - P.jiroveci:212 P.kodakaraensis:212

L0PA00              	100.00%		Q5JGN0              	100.00%
Bootstrap support for L0PA00 as seed ortholog is 100%.
Bootstrap support for Q5JGN0 as seed ortholog is 100%.

Group of orthologs #43. Best score 210 bits
Score difference with first non-orthologous sequence - P.jiroveci:210 P.kodakaraensis:66

L0PB96              	100.00%		Q5JGG2              	100.00%
Bootstrap support for L0PB96 as seed ortholog is 100%.
Bootstrap support for Q5JGG2 as seed ortholog is 94%.

Group of orthologs #44. Best score 207 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.kodakaraensis:207

L0PET5              	100.00%		Q5JDZ7              	100.00%
Bootstrap support for L0PET5 as seed ortholog is 92%.
Bootstrap support for Q5JDZ7 as seed ortholog is 100%.

Group of orthologs #45. Best score 203 bits
Score difference with first non-orthologous sequence - P.jiroveci:12 P.kodakaraensis:203

L0PH85              	100.00%		Q5JH16              	100.00%
Bootstrap support for L0PH85 as seed ortholog is 61%.
Alternative seed ortholog is L0PED9 (12 bits away from this cluster)
Bootstrap support for Q5JH16 as seed ortholog is 100%.

Group of orthologs #46. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 P.kodakaraensis:201

L0PC54              	100.00%		Q5JHC6              	100.00%
Bootstrap support for L0PC54 as seed ortholog is 100%.
Bootstrap support for Q5JHC6 as seed ortholog is 100%.

Group of orthologs #47. Best score 199 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 P.kodakaraensis:199

L0PA23              	100.00%		Q5JH48              	100.00%
Bootstrap support for L0PA23 as seed ortholog is 100%.
Bootstrap support for Q5JH48 as seed ortholog is 100%.

Group of orthologs #48. Best score 199 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 P.kodakaraensis:199

L0PBY6              	100.00%		Q5JJ43              	100.00%
Bootstrap support for L0PBY6 as seed ortholog is 100%.
Bootstrap support for Q5JJ43 as seed ortholog is 100%.

Group of orthologs #49. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:197 P.kodakaraensis:197

L0PCV7              	100.00%		Q5JGF4              	100.00%
Bootstrap support for L0PCV7 as seed ortholog is 100%.
Bootstrap support for Q5JGF4 as seed ortholog is 100%.

Group of orthologs #50. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:197 P.kodakaraensis:197

L0PE57              	100.00%		Q5JFP1              	100.00%
Bootstrap support for L0PE57 as seed ortholog is 100%.
Bootstrap support for Q5JFP1 as seed ortholog is 100%.

Group of orthologs #51. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:197 P.kodakaraensis:197

L0PFQ5              	100.00%		Q9HHC4              	100.00%
Bootstrap support for L0PFQ5 as seed ortholog is 100%.
Bootstrap support for Q9HHC4 as seed ortholog is 100%.

Group of orthologs #52. Best score 195 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 P.kodakaraensis:195

L0PFQ8              	100.00%		Q5JFN1              	100.00%
Bootstrap support for L0PFQ8 as seed ortholog is 100%.
Bootstrap support for Q5JFN1 as seed ortholog is 100%.

Group of orthologs #53. Best score 194 bits
Score difference with first non-orthologous sequence - P.jiroveci:194 P.kodakaraensis:28

L0P921              	100.00%		Q5JI15              	100.00%
Bootstrap support for L0P921 as seed ortholog is 100%.
Bootstrap support for Q5JI15 as seed ortholog is 75%.

Group of orthologs #54. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:16 P.kodakaraensis:191

L0PB03              	100.00%		Q5JIU9              	100.00%
Bootstrap support for L0PB03 as seed ortholog is 73%.
Alternative seed ortholog is L0PFU1 (16 bits away from this cluster)
Bootstrap support for Q5JIU9 as seed ortholog is 100%.

Group of orthologs #55. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:182 P.kodakaraensis:182

L0PCW8              	100.00%		Q5JGH7              	100.00%
Bootstrap support for L0PCW8 as seed ortholog is 100%.
Bootstrap support for Q5JGH7 as seed ortholog is 100%.

Group of orthologs #56. Best score 181 bits
Score difference with first non-orthologous sequence - P.jiroveci:181 P.kodakaraensis:181

L0PG22              	100.00%		Q5JFE7              	100.00%
L0PB04              	78.60%		
Bootstrap support for L0PG22 as seed ortholog is 100%.
Bootstrap support for Q5JFE7 as seed ortholog is 100%.

Group of orthologs #57. Best score 180 bits
Score difference with first non-orthologous sequence - P.jiroveci:180 P.kodakaraensis:180

L0P8R6              	100.00%		Q5JE24              	100.00%
                    	       		Q6F598              	5.62%
Bootstrap support for L0P8R6 as seed ortholog is 100%.
Bootstrap support for Q5JE24 as seed ortholog is 100%.

Group of orthologs #58. Best score 179 bits
Score difference with first non-orthologous sequence - P.jiroveci:179 P.kodakaraensis:179

L0PCQ8              	100.00%		Q5JFV8              	100.00%
L0PB68              	25.65%		
Bootstrap support for L0PCQ8 as seed ortholog is 100%.
Bootstrap support for Q5JFV8 as seed ortholog is 100%.

Group of orthologs #59. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:178 P.kodakaraensis:178

L0PDF2              	100.00%		Q5JGS4              	100.00%
Bootstrap support for L0PDF2 as seed ortholog is 100%.
Bootstrap support for Q5JGS4 as seed ortholog is 100%.

Group of orthologs #60. Best score 177 bits
Score difference with first non-orthologous sequence - P.jiroveci:177 P.kodakaraensis:177

L0PFT7              	100.00%		Q5JF38              	100.00%
Bootstrap support for L0PFT7 as seed ortholog is 100%.
Bootstrap support for Q5JF38 as seed ortholog is 100%.

Group of orthologs #61. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:176 P.kodakaraensis:176

L0PCX1              	100.00%		Q5JF06              	100.00%
Bootstrap support for L0PCX1 as seed ortholog is 100%.
Bootstrap support for Q5JF06 as seed ortholog is 100%.

Group of orthologs #62. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:176 P.kodakaraensis:176

L0PDQ4              	100.00%		Q5JIL7              	100.00%
Bootstrap support for L0PDQ4 as seed ortholog is 100%.
Bootstrap support for Q5JIL7 as seed ortholog is 100%.

Group of orthologs #63. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.kodakaraensis:176

L0PHY6              	100.00%		Q5JFN0              	100.00%
Bootstrap support for L0PHY6 as seed ortholog is 98%.
Bootstrap support for Q5JFN0 as seed ortholog is 100%.

Group of orthologs #64. Best score 175 bits
Score difference with first non-orthologous sequence - P.jiroveci:34 P.kodakaraensis:88

L0P9R7              	100.00%		Q5JDD8              	100.00%
Bootstrap support for L0P9R7 as seed ortholog is 83%.
Bootstrap support for Q5JDD8 as seed ortholog is 99%.

Group of orthologs #65. Best score 173 bits
Score difference with first non-orthologous sequence - P.jiroveci:173 P.kodakaraensis:173

L0PF83              	100.00%		Q5JDG3              	100.00%
Bootstrap support for L0PF83 as seed ortholog is 100%.
Bootstrap support for Q5JDG3 as seed ortholog is 100%.

Group of orthologs #66. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.kodakaraensis:172

L0PFS1              	100.00%		Q5JGE1              	100.00%
Bootstrap support for L0PFS1 as seed ortholog is 100%.
Bootstrap support for Q5JGE1 as seed ortholog is 100%.

Group of orthologs #67. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:117 P.kodakaraensis:171

L0PB50              	100.00%		Q5JGD1              	100.00%
Bootstrap support for L0PB50 as seed ortholog is 99%.
Bootstrap support for Q5JGD1 as seed ortholog is 100%.

Group of orthologs #68. Best score 165 bits
Score difference with first non-orthologous sequence - P.jiroveci:165 P.kodakaraensis:165

L0P7H2              	100.00%		Q5JH43              	100.00%
Bootstrap support for L0P7H2 as seed ortholog is 100%.
Bootstrap support for Q5JH43 as seed ortholog is 100%.

Group of orthologs #69. Best score 165 bits
Score difference with first non-orthologous sequence - P.jiroveci:165 P.kodakaraensis:165

L0PFY1              	100.00%		Q5JIE6              	100.00%
Bootstrap support for L0PFY1 as seed ortholog is 100%.
Bootstrap support for Q5JIE6 as seed ortholog is 100%.

Group of orthologs #70. Best score 164 bits
Score difference with first non-orthologous sequence - P.jiroveci:164 P.kodakaraensis:164

L0P7L7              	100.00%		Q5JDV8              	100.00%
                    	       		Q5JIM8              	10.66%
Bootstrap support for L0P7L7 as seed ortholog is 100%.
Bootstrap support for Q5JDV8 as seed ortholog is 100%.

Group of orthologs #71. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:161 P.kodakaraensis:161

L0P9G9              	100.00%		Q5JDJ5              	100.00%
Bootstrap support for L0P9G9 as seed ortholog is 100%.
Bootstrap support for Q5JDJ5 as seed ortholog is 100%.

Group of orthologs #72. Best score 159 bits
Score difference with first non-orthologous sequence - P.jiroveci:159 P.kodakaraensis:159

L0PAM2              	100.00%		Q5JJG1              	100.00%
Bootstrap support for L0PAM2 as seed ortholog is 100%.
Bootstrap support for Q5JJG1 as seed ortholog is 100%.

Group of orthologs #73. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.kodakaraensis:158

L0PHL1              	100.00%		Q5JE20              	100.00%
Bootstrap support for L0PHL1 as seed ortholog is 99%.
Bootstrap support for Q5JE20 as seed ortholog is 100%.

Group of orthologs #74. Best score 157 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 P.kodakaraensis:157

L0PD55              	100.00%		Q5JH96              	100.00%
Bootstrap support for L0PD55 as seed ortholog is 100%.
Bootstrap support for Q5JH96 as seed ortholog is 100%.

Group of orthologs #75. Best score 157 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 P.kodakaraensis:157

L0PCY5              	100.00%		Q5JIM2              	100.00%
Bootstrap support for L0PCY5 as seed ortholog is 100%.
Bootstrap support for Q5JIM2 as seed ortholog is 100%.

Group of orthologs #76. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:153 P.kodakaraensis:153

L0PBS5              	100.00%		Q5JGJ4              	100.00%
Bootstrap support for L0PBS5 as seed ortholog is 100%.
Bootstrap support for Q5JGJ4 as seed ortholog is 100%.

Group of orthologs #77. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:148 P.kodakaraensis:148

L0P8G8              	100.00%		Q5JI54              	100.00%
Bootstrap support for L0P8G8 as seed ortholog is 100%.
Bootstrap support for Q5JI54 as seed ortholog is 100%.

Group of orthologs #78. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:148 P.kodakaraensis:148

L0PFR9              	100.00%		Q5JH26              	100.00%
Bootstrap support for L0PFR9 as seed ortholog is 100%.
Bootstrap support for Q5JH26 as seed ortholog is 100%.

Group of orthologs #79. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 P.kodakaraensis:146

L0PFC0              	100.00%		Q5JGN1              	100.00%
                    	       		P58109              	60.23%
Bootstrap support for L0PFC0 as seed ortholog is 93%.
Bootstrap support for Q5JGN1 as seed ortholog is 100%.

Group of orthologs #80. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:146 P.kodakaraensis:146

L0PFI8              	100.00%		Q5JE04              	100.00%
Bootstrap support for L0PFI8 as seed ortholog is 100%.
Bootstrap support for Q5JE04 as seed ortholog is 100%.

Group of orthologs #81. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 P.kodakaraensis:139

L0PBL5              	100.00%		Q5JJ45              	100.00%
Bootstrap support for L0PBL5 as seed ortholog is 100%.
Bootstrap support for Q5JJ45 as seed ortholog is 100%.

Group of orthologs #82. Best score 138 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.kodakaraensis:26

L0PD68              	100.00%		Q5JES4              	100.00%
Bootstrap support for L0PD68 as seed ortholog is 99%.
Bootstrap support for Q5JES4 as seed ortholog is 81%.

Group of orthologs #83. Best score 138 bits
Score difference with first non-orthologous sequence - P.jiroveci:138 P.kodakaraensis:138

L0P9X7              	100.00%		Q76KA7              	100.00%
Bootstrap support for L0P9X7 as seed ortholog is 100%.
Bootstrap support for Q76KA7 as seed ortholog is 100%.

Group of orthologs #84. Best score 138 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.kodakaraensis:138

L0PEX1              	100.00%		Q5JH68              	100.00%
Bootstrap support for L0PEX1 as seed ortholog is 99%.
Bootstrap support for Q5JH68 as seed ortholog is 100%.

Group of orthologs #85. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 P.kodakaraensis:78

L0PBN2              	100.00%		Q5JHS7              	100.00%
Bootstrap support for L0PBN2 as seed ortholog is 100%.
Bootstrap support for Q5JHS7 as seed ortholog is 99%.

Group of orthologs #86. Best score 136 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 P.kodakaraensis:91

L0PBA8              	100.00%		Q5JGQ7              	100.00%
Bootstrap support for L0PBA8 as seed ortholog is 100%.
Bootstrap support for Q5JGQ7 as seed ortholog is 99%.

Group of orthologs #87. Best score 135 bits
Score difference with first non-orthologous sequence - P.jiroveci:135 P.kodakaraensis:135

L0PBI2              	100.00%		Q5JIB3              	100.00%
Bootstrap support for L0PBI2 as seed ortholog is 100%.
Bootstrap support for Q5JIB3 as seed ortholog is 100%.

Group of orthologs #88. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.kodakaraensis:44

L0PD82              	100.00%		Q5JI97              	100.00%
L0P6Q8              	40.04%		
Bootstrap support for L0PD82 as seed ortholog is 97%.
Bootstrap support for Q5JI97 as seed ortholog is 90%.

Group of orthologs #89. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:134 P.kodakaraensis:134

L0PFX9              	100.00%		Q5JFR0              	100.00%
Bootstrap support for L0PFX9 as seed ortholog is 100%.
Bootstrap support for Q5JFR0 as seed ortholog is 100%.

Group of orthologs #90. Best score 133 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 P.kodakaraensis:133

L0PDT2              	100.00%		Q5JGK6              	100.00%
Bootstrap support for L0PDT2 as seed ortholog is 100%.
Bootstrap support for Q5JGK6 as seed ortholog is 100%.

Group of orthologs #91. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.kodakaraensis:131

L0PAE8              	100.00%		Q5JDH3              	100.00%
Bootstrap support for L0PAE8 as seed ortholog is 100%.
Bootstrap support for Q5JDH3 as seed ortholog is 100%.

Group of orthologs #92. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:43 P.kodakaraensis:129

L0PCS3              	100.00%		Q5JEM6              	100.00%
Bootstrap support for L0PCS3 as seed ortholog is 87%.
Bootstrap support for Q5JEM6 as seed ortholog is 100%.

Group of orthologs #93. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.kodakaraensis:128

L0PB12              	100.00%		Q5JH24              	100.00%
Bootstrap support for L0PB12 as seed ortholog is 100%.
Bootstrap support for Q5JH24 as seed ortholog is 100%.

Group of orthologs #94. Best score 126 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 P.kodakaraensis:126

L0PB66              	100.00%		Q5JJG3              	100.00%
Bootstrap support for L0PB66 as seed ortholog is 100%.
Bootstrap support for Q5JJG3 as seed ortholog is 100%.

Group of orthologs #95. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 P.kodakaraensis:124

L0PBA9              	100.00%		Q5JE21              	100.00%
                    	       		Q5JF51              	17.92%
                    	       		Q5JHU0              	10.98%
Bootstrap support for L0PBA9 as seed ortholog is 100%.
Bootstrap support for Q5JE21 as seed ortholog is 100%.

Group of orthologs #96. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 P.kodakaraensis:124

L0P8J2              	100.00%		Q5JIB9              	100.00%
Bootstrap support for L0P8J2 as seed ortholog is 100%.
Bootstrap support for Q5JIB9 as seed ortholog is 100%.

Group of orthologs #97. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:35 P.kodakaraensis:124

L0P9T6              	100.00%		Q5JIR6              	100.00%
Bootstrap support for L0P9T6 as seed ortholog is 89%.
Bootstrap support for Q5JIR6 as seed ortholog is 100%.

Group of orthologs #98. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 P.kodakaraensis:124

L0PE58              	100.00%		Q5JJF1              	100.00%
Bootstrap support for L0PE58 as seed ortholog is 99%.
Bootstrap support for Q5JJF1 as seed ortholog is 100%.

Group of orthologs #99. Best score 123 bits
Score difference with first non-orthologous sequence - P.jiroveci:123 P.kodakaraensis:123

L0PF80              	100.00%		Q5JFL7              	100.00%
Bootstrap support for L0PF80 as seed ortholog is 100%.
Bootstrap support for Q5JFL7 as seed ortholog is 100%.

Group of orthologs #100. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 P.kodakaraensis:122

L0PC18              	100.00%		Q5JJG6              	100.00%
Bootstrap support for L0PC18 as seed ortholog is 100%.
Bootstrap support for Q5JJG6 as seed ortholog is 100%.

Group of orthologs #101. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 P.kodakaraensis:120

L0PBF0              	100.00%		O52958              	100.00%
L0P6V9              	24.37%		
Bootstrap support for L0PBF0 as seed ortholog is 97%.
Bootstrap support for O52958 as seed ortholog is 100%.

Group of orthologs #102. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 P.kodakaraensis:119

L0PFI2              	100.00%		Q5JE49              	100.00%
Bootstrap support for L0PFI2 as seed ortholog is 100%.
Bootstrap support for Q5JE49 as seed ortholog is 100%.

Group of orthologs #103. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.kodakaraensis:119

L0PHG7              	100.00%		Q5JH36              	100.00%
Bootstrap support for L0PHG7 as seed ortholog is 99%.
Bootstrap support for Q5JH36 as seed ortholog is 100%.

Group of orthologs #104. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:1 P.kodakaraensis:118

L0P834              	100.00%		Q5JFM9              	100.00%
                    	       		Q5JF43              	5.71%
Bootstrap support for L0P834 as seed ortholog is 47%.
Alternative seed ortholog is L0PC61 (1 bits away from this cluster)
Bootstrap support for Q5JFM9 as seed ortholog is 100%.

Group of orthologs #105. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 P.kodakaraensis:118

L0PAQ3              	100.00%		Q5JH18              	100.00%
Bootstrap support for L0PAQ3 as seed ortholog is 100%.
Bootstrap support for Q5JH18 as seed ortholog is 100%.

Group of orthologs #106. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 P.kodakaraensis:118

L0PCG4              	100.00%		Q5JJG0              	100.00%
Bootstrap support for L0PCG4 as seed ortholog is 100%.
Bootstrap support for Q5JJG0 as seed ortholog is 100%.

Group of orthologs #107. Best score 117 bits
Score difference with first non-orthologous sequence - P.jiroveci:117 P.kodakaraensis:117

L0PA42              	100.00%		Q5JJG7              	100.00%
Bootstrap support for L0PA42 as seed ortholog is 100%.
Bootstrap support for Q5JJG7 as seed ortholog is 100%.

Group of orthologs #108. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 P.kodakaraensis:45

L0PF49              	100.00%		Q5JGT2              	100.00%
                    	       		Q5JI45              	39.59%
Bootstrap support for L0PF49 as seed ortholog is 100%.
Bootstrap support for Q5JGT2 as seed ortholog is 87%.

Group of orthologs #109. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:17 P.kodakaraensis:113

L0PCJ2              	100.00%		Q5JDJ9              	100.00%
                    	       		Q5JHL8              	20.36%
Bootstrap support for L0PCJ2 as seed ortholog is 74%.
Alternative seed ortholog is L0PET2 (17 bits away from this cluster)
Bootstrap support for Q5JDJ9 as seed ortholog is 100%.

Group of orthologs #110. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.kodakaraensis:111

L0PHB9              	100.00%		Q5JEZ9              	100.00%
L0P9A8              	100.00%		Q5JH45              	100.00%
L0PBI4              	15.56%		
Bootstrap support for L0PHB9 as seed ortholog is 100%.
Bootstrap support for L0P9A8 as seed ortholog is 100%.
Bootstrap support for Q5JEZ9 as seed ortholog is 100%.
Bootstrap support for Q5JH45 as seed ortholog is 100%.

Group of orthologs #111. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.kodakaraensis:111

L0P905              	100.00%		Q5JF69              	100.00%
Bootstrap support for L0P905 as seed ortholog is 100%.
Bootstrap support for Q5JF69 as seed ortholog is 100%.

Group of orthologs #112. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.kodakaraensis:111

L0P9N5              	100.00%		Q5JJD2              	100.00%
Bootstrap support for L0P9N5 as seed ortholog is 99%.
Bootstrap support for Q5JJD2 as seed ortholog is 100%.

Group of orthologs #113. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 P.kodakaraensis:109

L0PG76              	100.00%		Q5JHT1              	100.00%
L0PE70              	59.46%		
Bootstrap support for L0PG76 as seed ortholog is 100%.
Bootstrap support for Q5JHT1 as seed ortholog is 100%.

Group of orthologs #114. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:108 P.kodakaraensis:108

L0P8H6              	100.00%		Q5JGN5              	100.00%
Bootstrap support for L0P8H6 as seed ortholog is 100%.
Bootstrap support for Q5JGN5 as seed ortholog is 100%.

Group of orthologs #115. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 P.kodakaraensis:108

L0PAG1              	100.00%		Q76CZ2              	100.00%
Bootstrap support for L0PAG1 as seed ortholog is 86%.
Bootstrap support for Q76CZ2 as seed ortholog is 100%.

Group of orthologs #116. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 P.kodakaraensis:107

L0P6Y2              	100.00%		Q5JIJ0              	100.00%
Bootstrap support for L0P6Y2 as seed ortholog is 100%.
Bootstrap support for Q5JIJ0 as seed ortholog is 100%.

Group of orthologs #117. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 P.kodakaraensis:62

L0PAH2              	100.00%		Q5JF63              	100.00%
Bootstrap support for L0PAH2 as seed ortholog is 100%.
Bootstrap support for Q5JF63 as seed ortholog is 92%.

Group of orthologs #118. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.kodakaraensis:103

L0PD75              	100.00%		P58502              	100.00%
Bootstrap support for L0PD75 as seed ortholog is 100%.
Bootstrap support for P58502 as seed ortholog is 100%.

Group of orthologs #119. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.kodakaraensis:102

L0PAG0              	100.00%		Q5JDI6              	100.00%
Bootstrap support for L0PAG0 as seed ortholog is 100%.
Bootstrap support for Q5JDI6 as seed ortholog is 100%.

Group of orthologs #120. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.kodakaraensis:102

L0PEQ4              	100.00%		Q5JJF4              	100.00%
Bootstrap support for L0PEQ4 as seed ortholog is 100%.
Bootstrap support for Q5JJF4 as seed ortholog is 100%.

Group of orthologs #121. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.kodakaraensis:101

L0PC79              	100.00%		Q5JDS2              	100.00%
Bootstrap support for L0PC79 as seed ortholog is 100%.
Bootstrap support for Q5JDS2 as seed ortholog is 100%.

Group of orthologs #122. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.kodakaraensis:101

L0PB60              	100.00%		Q5JGC8              	100.00%
Bootstrap support for L0PB60 as seed ortholog is 100%.
Bootstrap support for Q5JGC8 as seed ortholog is 100%.

Group of orthologs #123. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.kodakaraensis:101

L0PBL2              	100.00%		Q5JI98              	100.00%
Bootstrap support for L0PBL2 as seed ortholog is 100%.
Bootstrap support for Q5JI98 as seed ortholog is 100%.

Group of orthologs #124. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.kodakaraensis:101

L0PEV9              	100.00%		Q5JGT4              	100.00%
Bootstrap support for L0PEV9 as seed ortholog is 100%.
Bootstrap support for Q5JGT4 as seed ortholog is 100%.

Group of orthologs #125. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:10 P.kodakaraensis:101

L0PEH9              	100.00%		Q5JIR7              	100.00%
Bootstrap support for L0PEH9 as seed ortholog is 63%.
Alternative seed ortholog is L0PB17 (10 bits away from this cluster)
Bootstrap support for Q5JIR7 as seed ortholog is 100%.

Group of orthologs #126. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.kodakaraensis:96

L0PCA8              	100.00%		Q5JJF8              	100.00%
Bootstrap support for L0PCA8 as seed ortholog is 100%.
Bootstrap support for Q5JJF8 as seed ortholog is 100%.

Group of orthologs #127. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 P.kodakaraensis:94

L0P7A1              	100.00%		Q5JDB8              	100.00%
Bootstrap support for L0P7A1 as seed ortholog is 100%.
Bootstrap support for Q5JDB8 as seed ortholog is 100%.

Group of orthologs #128. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 P.kodakaraensis:94

L0PFG9              	100.00%		Q5JEB7              	100.00%
Bootstrap support for L0PFG9 as seed ortholog is 100%.
Bootstrap support for Q5JEB7 as seed ortholog is 100%.

Group of orthologs #129. Best score 93 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 P.kodakaraensis:93

L0P8J0              	100.00%		Q5JE74              	100.00%
Bootstrap support for L0P8J0 as seed ortholog is 100%.
Bootstrap support for Q5JE74 as seed ortholog is 100%.

Group of orthologs #130. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 P.kodakaraensis:92

L0PGE7              	100.00%		Q5JIR5              	100.00%
Bootstrap support for L0PGE7 as seed ortholog is 100%.
Bootstrap support for Q5JIR5 as seed ortholog is 100%.

Group of orthologs #131. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.kodakaraensis:91

L0PDW0              	100.00%		Q5JET7              	100.00%
Bootstrap support for L0PDW0 as seed ortholog is 100%.
Bootstrap support for Q5JET7 as seed ortholog is 100%.

Group of orthologs #132. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:18 P.kodakaraensis:91

L0PBZ6              	100.00%		Q5JH34              	100.00%
Bootstrap support for L0PBZ6 as seed ortholog is 78%.
Bootstrap support for Q5JH34 as seed ortholog is 100%.

Group of orthologs #133. Best score 90 bits
Score difference with first non-orthologous sequence - P.jiroveci:90 P.kodakaraensis:90

L0P7V4              	100.00%		Q5JH82              	100.00%
Bootstrap support for L0P7V4 as seed ortholog is 100%.
Bootstrap support for Q5JH82 as seed ortholog is 100%.

Group of orthologs #134. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 P.kodakaraensis:89

L0PBL4              	100.00%		Q5JD31              	100.00%
Bootstrap support for L0PBL4 as seed ortholog is 100%.
Bootstrap support for Q5JD31 as seed ortholog is 100%.

Group of orthologs #135. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:26 P.kodakaraensis:89

L0PFK9              	100.00%		Q5JG47              	100.00%
Bootstrap support for L0PFK9 as seed ortholog is 74%.
Alternative seed ortholog is L0PAA5 (26 bits away from this cluster)
Bootstrap support for Q5JG47 as seed ortholog is 100%.

Group of orthologs #136. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 P.kodakaraensis:89

L0PG87              	100.00%		Q5JJF9              	100.00%
Bootstrap support for L0PG87 as seed ortholog is 100%.
Bootstrap support for Q5JJF9 as seed ortholog is 100%.

Group of orthologs #137. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 P.kodakaraensis:88

L0P9N4              	100.00%		Q5JFZ5              	100.00%
Bootstrap support for L0P9N4 as seed ortholog is 100%.
Bootstrap support for Q5JFZ5 as seed ortholog is 100%.

Group of orthologs #138. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 P.kodakaraensis:88

L0PGY0              	100.00%		Q5JDH4              	100.00%
Bootstrap support for L0PGY0 as seed ortholog is 100%.
Bootstrap support for Q5JDH4 as seed ortholog is 100%.

Group of orthologs #139. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 P.kodakaraensis:86

L0PBT0              	100.00%		Q5JI44              	100.00%
Bootstrap support for L0PBT0 as seed ortholog is 100%.
Bootstrap support for Q5JI44 as seed ortholog is 100%.

Group of orthologs #140. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 P.kodakaraensis:86

L0PF71              	100.00%		Q5JIQ0              	100.00%
Bootstrap support for L0PF71 as seed ortholog is 100%.
Bootstrap support for Q5JIQ0 as seed ortholog is 100%.

Group of orthologs #141. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 P.kodakaraensis:84

L0P7Y5              	100.00%		Q5JIK4              	100.00%
                    	       		Q5JJB9              	100.00%
                    	       		Q5JFZ8              	15.90%
                    	       		Q5JGP4              	14.89%
                    	       		Q5JGT0              	6.26%
Bootstrap support for L0P7Y5 as seed ortholog is 100%.
Bootstrap support for Q5JIK4 as seed ortholog is 100%.
Bootstrap support for Q5JJB9 as seed ortholog is 100%.

Group of orthologs #142. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.kodakaraensis:83

L0PCK5              	100.00%		Q5JFI2              	100.00%
L0PGY9              	60.95%		
L0PA98              	36.21%		
L0P826              	22.35%		
Bootstrap support for L0PCK5 as seed ortholog is 100%.
Bootstrap support for Q5JFI2 as seed ortholog is 100%.

Group of orthologs #143. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 P.kodakaraensis:82

L0PGG1              	100.00%		Q5JG19              	100.00%
Bootstrap support for L0PGG1 as seed ortholog is 100%.
Bootstrap support for Q5JG19 as seed ortholog is 100%.

Group of orthologs #144. Best score 81 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 P.kodakaraensis:81

L0P9I0              	100.00%		Q5JDH9              	100.00%
Bootstrap support for L0P9I0 as seed ortholog is 100%.
Bootstrap support for Q5JDH9 as seed ortholog is 100%.

Group of orthologs #145. Best score 81 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 P.kodakaraensis:81

L0PE02              	100.00%		Q5JH21              	100.00%
Bootstrap support for L0PE02 as seed ortholog is 100%.
Bootstrap support for Q5JH21 as seed ortholog is 100%.

Group of orthologs #146. Best score 80 bits
Score difference with first non-orthologous sequence - P.jiroveci:80 P.kodakaraensis:80

L0PF44              	100.00%		Q5JIV0              	100.00%
Bootstrap support for L0PF44 as seed ortholog is 100%.
Bootstrap support for Q5JIV0 as seed ortholog is 100%.

Group of orthologs #147. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 P.kodakaraensis:79

L0PGV2              	100.00%		Q5JI74              	100.00%
L0PG40              	68.64%		
Bootstrap support for L0PGV2 as seed ortholog is 100%.
Bootstrap support for Q5JI74 as seed ortholog is 100%.

Group of orthologs #148. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 P.kodakaraensis:79

L0P9Y2              	100.00%		Q5JJF6              	100.00%
Bootstrap support for L0P9Y2 as seed ortholog is 100%.
Bootstrap support for Q5JJF6 as seed ortholog is 100%.

Group of orthologs #149. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.kodakaraensis:77

L0PBU8              	100.00%		Q5JIH2              	100.00%
                    	       		Q5JDW2              	5.71%
Bootstrap support for L0PBU8 as seed ortholog is 100%.
Bootstrap support for Q5JIH2 as seed ortholog is 100%.

Group of orthologs #150. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:34 P.kodakaraensis:77

L0PF23              	100.00%		Q5JIB6              	100.00%
                    	       		Q5JH42              	25.41%
Bootstrap support for L0PF23 as seed ortholog is 79%.
Bootstrap support for Q5JIB6 as seed ortholog is 100%.

Group of orthologs #151. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:21 P.kodakaraensis:77

L0PBL9              	100.00%		Q5JET2              	100.00%
Bootstrap support for L0PBL9 as seed ortholog is 69%.
Alternative seed ortholog is L0PC32 (21 bits away from this cluster)
Bootstrap support for Q5JET2 as seed ortholog is 100%.

Group of orthologs #152. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.kodakaraensis:77

L0PGZ5              	100.00%		Q5JJE2              	100.00%
Bootstrap support for L0PGZ5 as seed ortholog is 100%.
Bootstrap support for Q5JJE2 as seed ortholog is 100%.

Group of orthologs #153. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.kodakaraensis:76

L0P9L0              	100.00%		Q5JF34              	100.00%
Bootstrap support for L0P9L0 as seed ortholog is 100%.
Bootstrap support for Q5JF34 as seed ortholog is 100%.

Group of orthologs #154. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.kodakaraensis:76

L0P897              	100.00%		Q5JIB2              	100.00%
Bootstrap support for L0P897 as seed ortholog is 100%.
Bootstrap support for Q5JIB2 as seed ortholog is 100%.

Group of orthologs #155. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.kodakaraensis:76

L0PBQ9              	100.00%		Q5JIA1              	100.00%
Bootstrap support for L0PBQ9 as seed ortholog is 100%.
Bootstrap support for Q5JIA1 as seed ortholog is 100%.

Group of orthologs #156. Best score 75 bits
Score difference with first non-orthologous sequence - P.jiroveci:75 P.kodakaraensis:75

L0P949              	100.00%		Q5JI92              	100.00%
Bootstrap support for L0P949 as seed ortholog is 100%.
Bootstrap support for Q5JI92 as seed ortholog is 100%.

Group of orthologs #157. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.kodakaraensis:73

L0PBK0              	100.00%		Q5JJC9              	100.00%
Bootstrap support for L0PBK0 as seed ortholog is 100%.
Bootstrap support for Q5JJC9 as seed ortholog is 100%.

Group of orthologs #158. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.kodakaraensis:72

L0PFY9              	100.00%		Q5JDG1              	100.00%
Bootstrap support for L0PFY9 as seed ortholog is 100%.
Bootstrap support for Q5JDG1 as seed ortholog is 100%.

Group of orthologs #159. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:28 P.kodakaraensis:71

L0PEH1              	100.00%		Q5JEP9              	100.00%
L0PCR9              	9.62%		Q5JF59              	15.17%
                    	       		Q5JJ96              	14.94%
                    	       		Q5JFJ1              	14.25%
                    	       		Q5JJ54              	14.02%
                    	       		Q5JIG9              	13.33%
                    	       		Q5JHD4              	12.18%
                    	       		Q5JG78              	12.18%
                    	       		Q5JE43              	11.95%
                    	       		Q5JGD3              	11.95%
                    	       		Q5JEB0              	10.11%
                    	       		Q5JIG1              	9.89%
                    	       		Q5JJ95              	9.66%
                    	       		Q5JCX0              	6.90%
                    	       		Q5JHL7              	6.44%
                    	       		Q5JIN8              	6.21%
                    	       		Q5JDD9              	5.98%
                    	       		Q5JDD3              	5.75%
Bootstrap support for L0PEH1 as seed ortholog is 78%.
Bootstrap support for Q5JEP9 as seed ortholog is 100%.

Group of orthologs #160. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.kodakaraensis:71

L0P7Z6              	100.00%		Q5JHC0              	100.00%
                    	       		Q5JHG7              	6.31%
Bootstrap support for L0P7Z6 as seed ortholog is 100%.
Bootstrap support for Q5JHC0 as seed ortholog is 100%.

Group of orthologs #161. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.kodakaraensis:71

L0PBY9              	100.00%		Q5JF49              	100.00%
Bootstrap support for L0PBY9 as seed ortholog is 100%.
Bootstrap support for Q5JF49 as seed ortholog is 100%.

Group of orthologs #162. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.kodakaraensis:71

L0PB28              	100.00%		Q5JIF4              	100.00%
Bootstrap support for L0PB28 as seed ortholog is 100%.
Bootstrap support for Q5JIF4 as seed ortholog is 100%.

Group of orthologs #163. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.kodakaraensis:70

L0PFJ0              	100.00%		Q5JJ26              	100.00%
Bootstrap support for L0PFJ0 as seed ortholog is 100%.
Bootstrap support for Q5JJ26 as seed ortholog is 100%.

Group of orthologs #164. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.kodakaraensis:70

L0PHP6              	100.00%		Q5JHF4              	100.00%
Bootstrap support for L0PHP6 as seed ortholog is 100%.
Bootstrap support for Q5JHF4 as seed ortholog is 100%.

Group of orthologs #165. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 P.kodakaraensis:69

L0P903              	100.00%		Q5JIX4              	100.00%
                    	       		Q5JHE3              	9.35%
Bootstrap support for L0P903 as seed ortholog is 100%.
Bootstrap support for Q5JIX4 as seed ortholog is 100%.

Group of orthologs #166. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 P.kodakaraensis:69

L0PF35              	100.00%		Q5JES6              	100.00%
                    	       		Q5JFK6              	22.86%
Bootstrap support for L0PF35 as seed ortholog is 100%.
Bootstrap support for Q5JES6 as seed ortholog is 100%.

Group of orthologs #167. Best score 68 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 P.kodakaraensis:68

L0PCG0              	100.00%		Q5JJG9              	100.00%
Bootstrap support for L0PCG0 as seed ortholog is 100%.
Bootstrap support for Q5JJG9 as seed ortholog is 100%.

Group of orthologs #168. Best score 68 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 P.kodakaraensis:68

L0PFL8              	100.00%		Q5JGM4              	100.00%
Bootstrap support for L0PFL8 as seed ortholog is 100%.
Bootstrap support for Q5JGM4 as seed ortholog is 100%.

Group of orthologs #169. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 P.kodakaraensis:67

L0PAI4              	100.00%		Q5JI34              	100.00%
L0PEY0              	23.52%		
Bootstrap support for L0PAI4 as seed ortholog is 100%.
Bootstrap support for Q5JI34 as seed ortholog is 100%.

Group of orthologs #170. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 P.kodakaraensis:67

L0PFN8              	100.00%		Q5JFN5              	100.00%
                    	       		Q5JD27              	11.39%
Bootstrap support for L0PFN8 as seed ortholog is 100%.
Bootstrap support for Q5JFN5 as seed ortholog is 100%.

Group of orthologs #171. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.kodakaraensis:66

L0P8X8              	100.00%		Q5JEW5              	100.00%
L0PA92              	51.89%		
Bootstrap support for L0P8X8 as seed ortholog is 100%.
Bootstrap support for Q5JEW5 as seed ortholog is 100%.

Group of orthologs #172. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.kodakaraensis:66

L0PCU6              	100.00%		O74035              	100.00%
Bootstrap support for L0PCU6 as seed ortholog is 100%.
Bootstrap support for O74035 as seed ortholog is 100%.

Group of orthologs #173. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.kodakaraensis:66

L0PBA4              	100.00%		Q5JGG1              	100.00%
Bootstrap support for L0PBA4 as seed ortholog is 100%.
Bootstrap support for Q5JGG1 as seed ortholog is 100%.

Group of orthologs #174. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.kodakaraensis:65

L0PD65              	100.00%		Q5JI42              	100.00%
Bootstrap support for L0PD65 as seed ortholog is 100%.
Bootstrap support for Q5JI42 as seed ortholog is 100%.

Group of orthologs #175. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.kodakaraensis:64

L0P8J6              	100.00%		Q5JE86              	100.00%
Bootstrap support for L0P8J6 as seed ortholog is 100%.
Bootstrap support for Q5JE86 as seed ortholog is 100%.

Group of orthologs #176. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.kodakaraensis:64

L0PDC7              	100.00%		Q5JIY3              	100.00%
Bootstrap support for L0PDC7 as seed ortholog is 100%.
Bootstrap support for Q5JIY3 as seed ortholog is 100%.

Group of orthologs #177. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.kodakaraensis:64

L0PEG0              	100.00%		Q5JIY8              	100.00%
Bootstrap support for L0PEG0 as seed ortholog is 100%.
Bootstrap support for Q5JIY8 as seed ortholog is 100%.

Group of orthologs #178. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 P.kodakaraensis:63

L0PBC5              	100.00%		Q5JDR9              	100.00%
Bootstrap support for L0PBC5 as seed ortholog is 100%.
Bootstrap support for Q5JDR9 as seed ortholog is 100%.

Group of orthologs #179. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 P.kodakaraensis:63

L0PA09              	100.00%		Q5JFK1              	100.00%
Bootstrap support for L0PA09 as seed ortholog is 100%.
Bootstrap support for Q5JFK1 as seed ortholog is 100%.

Group of orthologs #180. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 P.kodakaraensis:63

L0PBI9              	100.00%		Q5JE35              	100.00%
Bootstrap support for L0PBI9 as seed ortholog is 100%.
Bootstrap support for Q5JE35 as seed ortholog is 100%.

Group of orthologs #181. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.kodakaraensis:62

L0PD03              	100.00%		Q5JCX7              	100.00%
L0P861              	39.29%		
Bootstrap support for L0PD03 as seed ortholog is 100%.
Bootstrap support for Q5JCX7 as seed ortholog is 100%.

Group of orthologs #182. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.kodakaraensis:62

L0PEE8              	100.00%		Q5JHE8              	100.00%
Bootstrap support for L0PEE8 as seed ortholog is 100%.
Bootstrap support for Q5JHE8 as seed ortholog is 100%.

Group of orthologs #183. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 P.kodakaraensis:61

L0PGA8              	100.00%		Q5JFH7              	100.00%
                    	       		Q5JEW2              	37.38%
                    	       		Q5JIA8              	37.14%
                    	       		Q5JEN7              	36.42%
                    	       		Q5JEY6              	36.42%
Bootstrap support for L0PGA8 as seed ortholog is 100%.
Bootstrap support for Q5JFH7 as seed ortholog is 100%.

Group of orthologs #184. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 P.kodakaraensis:60

L0PBS4              	100.00%		Q5JJF2              	100.00%
Bootstrap support for L0PBS4 as seed ortholog is 100%.
Bootstrap support for Q5JJF2 as seed ortholog is 100%.

Group of orthologs #185. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.kodakaraensis:59

L0P8G4              	100.00%		Q5JGR4              	100.00%
Bootstrap support for L0P8G4 as seed ortholog is 100%.
Bootstrap support for Q5JGR4 as seed ortholog is 100%.

Group of orthologs #186. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.kodakaraensis:59

L0PCK2              	100.00%		Q5JGE0              	100.00%
Bootstrap support for L0PCK2 as seed ortholog is 100%.
Bootstrap support for Q5JGE0 as seed ortholog is 100%.

Group of orthologs #187. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.kodakaraensis:59

L0PBJ0              	100.00%		Q5JHT3              	100.00%
Bootstrap support for L0PBJ0 as seed ortholog is 100%.
Bootstrap support for Q5JHT3 as seed ortholog is 100%.

Group of orthologs #188. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.kodakaraensis:59

L0PDT0              	100.00%		Q5JFW9              	100.00%
Bootstrap support for L0PDT0 as seed ortholog is 100%.
Bootstrap support for Q5JFW9 as seed ortholog is 100%.

Group of orthologs #189. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.kodakaraensis:59

L0PDP9              	100.00%		Q5JHP6              	100.00%
Bootstrap support for L0PDP9 as seed ortholog is 100%.
Bootstrap support for Q5JHP6 as seed ortholog is 100%.

Group of orthologs #190. Best score 58 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 P.kodakaraensis:58

L0P7D2              	100.00%		Q5JFY9              	100.00%
Bootstrap support for L0P7D2 as seed ortholog is 100%.
Bootstrap support for Q5JFY9 as seed ortholog is 100%.

Group of orthologs #191. Best score 57 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 P.kodakaraensis:57

L0PCU0              	100.00%		Q5JH80              	100.00%
Bootstrap support for L0PCU0 as seed ortholog is 100%.
Bootstrap support for Q5JH80 as seed ortholog is 100%.

Group of orthologs #192. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 P.kodakaraensis:56

L0PFQ3              	100.00%		Q5JG15              	100.00%
Bootstrap support for L0PFQ3 as seed ortholog is 100%.
Bootstrap support for Q5JG15 as seed ortholog is 100%.

Group of orthologs #193. Best score 55 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 P.kodakaraensis:55

L0PGQ4              	100.00%		Q5JHS3              	100.00%
Bootstrap support for L0PGQ4 as seed ortholog is 100%.
Bootstrap support for Q5JHS3 as seed ortholog is 100%.

Group of orthologs #194. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 P.kodakaraensis:54

L0PC85              	100.00%		Q5JEX2              	100.00%
Bootstrap support for L0PC85 as seed ortholog is 100%.
Bootstrap support for Q5JEX2 as seed ortholog is 100%.

Group of orthologs #195. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 P.kodakaraensis:54

L0PEG7              	100.00%		Q5JES5              	100.00%
Bootstrap support for L0PEG7 as seed ortholog is 100%.
Bootstrap support for Q5JES5 as seed ortholog is 100%.

Group of orthologs #196. Best score 53 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 P.kodakaraensis:53

L0P746              	100.00%		Q5JEU9              	100.00%
Bootstrap support for L0P746 as seed ortholog is 100%.
Bootstrap support for Q5JEU9 as seed ortholog is 100%.

Group of orthologs #197. Best score 52 bits
Score difference with first non-orthologous sequence - P.jiroveci:52 P.kodakaraensis:52

L0PDS3              	100.00%		Q8NKS4              	100.00%
L0PBK7              	100.00%		Q5JJ90              	100.00%
L0P8A5              	98.84%		
Bootstrap support for L0PDS3 as seed ortholog is 100%.
Bootstrap support for L0PBK7 as seed ortholog is 100%.
Bootstrap support for Q8NKS4 as seed ortholog is 100%.
Bootstrap support for Q5JJ90 as seed ortholog is 100%.

Group of orthologs #198. Best score 52 bits
Score difference with first non-orthologous sequence - P.jiroveci:52 P.kodakaraensis:52

L0PEE4              	100.00%		Q6I7B6              	100.00%
                    	       		Q68BJ7              	34.64%
                    	       		Q68BJ6              	32.27%
Bootstrap support for L0PEE4 as seed ortholog is 100%.
Bootstrap support for Q6I7B6 as seed ortholog is 100%.

Group of orthologs #199. Best score 52 bits
Score difference with first non-orthologous sequence - P.jiroveci:52 P.kodakaraensis:52

L0P9A7              	100.00%		Q5JIE0              	100.00%
Bootstrap support for L0P9A7 as seed ortholog is 100%.
Bootstrap support for Q5JIE0 as seed ortholog is 100%.

Group of orthologs #200. Best score 51 bits
Score difference with first non-orthologous sequence - P.jiroveci:51 P.kodakaraensis:51

L0PED5              	100.00%		Q5JJ72              	100.00%
Bootstrap support for L0PED5 as seed ortholog is 100%.
Bootstrap support for Q5JJ72 as seed ortholog is 100%.

Group of orthologs #201. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.kodakaraensis:50

L0P9S1              	100.00%		Q5JGZ7              	100.00%
                    	       		Q5JFG7              	6.05%
Bootstrap support for L0P9S1 as seed ortholog is 100%.
Bootstrap support for Q5JGZ7 as seed ortholog is 100%.

Group of orthologs #202. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.kodakaraensis:50

L0PB99              	100.00%		Q5JIE3              	100.00%
                    	       		Q5JE63              	5.29%
Bootstrap support for L0PB99 as seed ortholog is 100%.
Bootstrap support for Q5JIE3 as seed ortholog is 100%.

Group of orthologs #203. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.kodakaraensis:50

L0P7Z9              	100.00%		Q5JIY4              	100.00%
Bootstrap support for L0P7Z9 as seed ortholog is 100%.
Bootstrap support for Q5JIY4 as seed ortholog is 100%.

Group of orthologs #204. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 P.kodakaraensis:49

L0PC82              	100.00%		Q5JFL6              	100.00%
Bootstrap support for L0PC82 as seed ortholog is 100%.
Bootstrap support for Q5JFL6 as seed ortholog is 100%.

Group of orthologs #205. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 P.kodakaraensis:49

L0PHC9              	100.00%		Q5JIS0              	100.00%
Bootstrap support for L0PHC9 as seed ortholog is 100%.
Bootstrap support for Q5JIS0 as seed ortholog is 100%.

Group of orthologs #206. Best score 46 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 P.kodakaraensis:46

L0P9C7              	100.00%		Q5JE98              	100.00%
                    	       		Q9V2X2              	70.98%
Bootstrap support for L0P9C7 as seed ortholog is 100%.
Bootstrap support for Q5JE98 as seed ortholog is 100%.

Group of orthologs #207. Best score 45 bits
Score difference with first non-orthologous sequence - P.jiroveci:45 P.kodakaraensis:45

L0PA05              	100.00%		Q5JHR7              	100.00%
L0PCV1              	12.33%		
L0PDR1              	6.25%		
Bootstrap support for L0PA05 as seed ortholog is 100%.
Bootstrap support for Q5JHR7 as seed ortholog is 100%.

Group of orthologs #208. Best score 45 bits
Score difference with first non-orthologous sequence - P.jiroveci:45 P.kodakaraensis:45

L0PCQ4              	100.00%		Q5JJF7              	100.00%
Bootstrap support for L0PCQ4 as seed ortholog is 100%.
Bootstrap support for Q5JJF7 as seed ortholog is 100%.

Group of orthologs #209. Best score 45 bits
Score difference with first non-orthologous sequence - P.jiroveci:45 P.kodakaraensis:45

L0PI19              	100.00%		Q5JJ91              	100.00%
Bootstrap support for L0PI19 as seed ortholog is 100%.
Bootstrap support for Q5JJ91 as seed ortholog is 100%.

Group of orthologs #210. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 P.kodakaraensis:44

L0PFZ6              	100.00%		Q5JH23              	100.00%
L0P7L2              	97.05%		
Bootstrap support for L0PFZ6 as seed ortholog is 100%.
Bootstrap support for Q5JH23 as seed ortholog is 100%.

Group of orthologs #211. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 P.kodakaraensis:44

L0P8P0              	100.00%		Q5JIP5              	100.00%
Bootstrap support for L0P8P0 as seed ortholog is 100%.
Bootstrap support for Q5JIP5 as seed ortholog is 100%.

Group of orthologs #212. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 P.kodakaraensis:44

L0PCH1              	100.00%		Q5JFS1              	100.00%
Bootstrap support for L0PCH1 as seed ortholog is 100%.
Bootstrap support for Q5JFS1 as seed ortholog is 100%.

Group of orthologs #213. Best score 44 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 P.kodakaraensis:44

L0PG86              	100.00%		Q5JDG9              	100.00%
Bootstrap support for L0PG86 as seed ortholog is 100%.
Bootstrap support for Q5JDG9 as seed ortholog is 100%.

Group of orthologs #214. Best score 43 bits
Score difference with first non-orthologous sequence - P.jiroveci:43 P.kodakaraensis:43

L0P939              	100.00%		Q5JIR4              	100.00%
L0PFG4              	91.96%		
Bootstrap support for L0P939 as seed ortholog is 100%.
Bootstrap support for Q5JIR4 as seed ortholog is 100%.

Group of orthologs #215. Best score 40 bits
Score difference with first non-orthologous sequence - P.jiroveci:40 P.kodakaraensis:40

L0PAB2              	100.00%		Q5JIX8              	100.00%
                    	       		Q5JJF0              	9.68%
Bootstrap support for L0PAB2 as seed ortholog is 100%.
Bootstrap support for Q5JIX8 as seed ortholog is 100%.