###################################
807 groups of orthologs
857 in-paralogs from P.jiroveci
830 in-paralogs from P.knowlesi
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3189 bits
Score difference with first non-orthologous sequence - P.jiroveci:3189 P.knowlesi:3189

L0PCQ0              	100.00%		B3KZY4              	100.00%
Bootstrap support for L0PCQ0 as seed ortholog is 100%.
Bootstrap support for B3KZY4 as seed ortholog is 100%.

Group of orthologs #2. Best score 2331 bits
Score difference with first non-orthologous sequence - P.jiroveci:2331 P.knowlesi:1357

L0PGR1              	100.00%		B3KZT8              	100.00%
Bootstrap support for L0PGR1 as seed ortholog is 100%.
Bootstrap support for B3KZT8 as seed ortholog is 100%.

Group of orthologs #3. Best score 1569 bits
Score difference with first non-orthologous sequence - P.jiroveci:1569 P.knowlesi:1569

L0PB90              	100.00%		B3L428              	100.00%
Bootstrap support for L0PB90 as seed ortholog is 100%.
Bootstrap support for B3L428 as seed ortholog is 100%.

Group of orthologs #4. Best score 1223 bits
Score difference with first non-orthologous sequence - P.jiroveci:1223 P.knowlesi:1223

L0PHB1              	100.00%		B3L1P3              	100.00%
Bootstrap support for L0PHB1 as seed ortholog is 100%.
Bootstrap support for B3L1P3 as seed ortholog is 100%.

Group of orthologs #5. Best score 1207 bits
Score difference with first non-orthologous sequence - P.jiroveci:1207 P.knowlesi:803

L0PG77              	100.00%		B3LB54              	100.00%
Bootstrap support for L0PG77 as seed ortholog is 100%.
Bootstrap support for B3LB54 as seed ortholog is 100%.

Group of orthologs #6. Best score 1133 bits
Score difference with first non-orthologous sequence - P.jiroveci:1133 P.knowlesi:1133

L0PG53              	100.00%		B3L4A9              	100.00%
Bootstrap support for L0PG53 as seed ortholog is 100%.
Bootstrap support for B3L4A9 as seed ortholog is 100%.

Group of orthologs #7. Best score 1121 bits
Score difference with first non-orthologous sequence - P.jiroveci:1121 P.knowlesi:1121

L0P818              	100.00%		B3LBF9              	100.00%
Bootstrap support for L0P818 as seed ortholog is 100%.
Bootstrap support for B3LBF9 as seed ortholog is 100%.

Group of orthologs #8. Best score 1112 bits
Score difference with first non-orthologous sequence - P.jiroveci:1112 P.knowlesi:1112

L0P7C3              	100.00%		B3LBP4              	100.00%
Bootstrap support for L0P7C3 as seed ortholog is 100%.
Bootstrap support for B3LBP4 as seed ortholog is 100%.

Group of orthologs #9. Best score 1042 bits
Score difference with first non-orthologous sequence - P.jiroveci:1042 P.knowlesi:1042

L0PBY6              	100.00%		B3LBC1              	100.00%
Bootstrap support for L0PBY6 as seed ortholog is 100%.
Bootstrap support for B3LBC1 as seed ortholog is 100%.

Group of orthologs #10. Best score 1030 bits
Score difference with first non-orthologous sequence - P.jiroveci:1030 P.knowlesi:1030

L0PGI2              	100.00%		B3L960              	100.00%
Bootstrap support for L0PGI2 as seed ortholog is 100%.
Bootstrap support for B3L960 as seed ortholog is 100%.

Group of orthologs #11. Best score 997 bits
Score difference with first non-orthologous sequence - P.jiroveci:997 P.knowlesi:997

L0PEL4              	100.00%		B3LBE9              	100.00%
Bootstrap support for L0PEL4 as seed ortholog is 100%.
Bootstrap support for B3LBE9 as seed ortholog is 100%.

Group of orthologs #12. Best score 939 bits
Score difference with first non-orthologous sequence - P.jiroveci:939 P.knowlesi:939

L0PBF5              	100.00%		B3LCI5              	100.00%
Bootstrap support for L0PBF5 as seed ortholog is 100%.
Bootstrap support for B3LCI5 as seed ortholog is 100%.

Group of orthologs #13. Best score 928 bits
Score difference with first non-orthologous sequence - P.jiroveci:928 P.knowlesi:928

L0PCG8              	100.00%		B3LCZ1              	100.00%
Bootstrap support for L0PCG8 as seed ortholog is 100%.
Bootstrap support for B3LCZ1 as seed ortholog is 100%.

Group of orthologs #14. Best score 896 bits
Score difference with first non-orthologous sequence - P.jiroveci:896 P.knowlesi:896

L0PDK3              	100.00%		B3L1S9              	100.00%
Bootstrap support for L0PDK3 as seed ortholog is 100%.
Bootstrap support for B3L1S9 as seed ortholog is 100%.

Group of orthologs #15. Best score 896 bits
Score difference with first non-orthologous sequence - P.jiroveci:701 P.knowlesi:747

L0PEK6              	100.00%		B3L1A4              	100.00%
Bootstrap support for L0PEK6 as seed ortholog is 100%.
Bootstrap support for B3L1A4 as seed ortholog is 100%.

Group of orthologs #16. Best score 879 bits
Score difference with first non-orthologous sequence - P.jiroveci:879 P.knowlesi:879

L0PD06              	100.00%		B3LA26              	100.00%
Bootstrap support for L0PD06 as seed ortholog is 100%.
Bootstrap support for B3LA26 as seed ortholog is 100%.

Group of orthologs #17. Best score 875 bits
Score difference with first non-orthologous sequence - P.jiroveci:875 P.knowlesi:875

L0P928              	100.00%		B3L3I5              	100.00%
Bootstrap support for L0P928 as seed ortholog is 100%.
Bootstrap support for B3L3I5 as seed ortholog is 100%.

Group of orthologs #18. Best score 872 bits
Score difference with first non-orthologous sequence - P.jiroveci:872 P.knowlesi:872

L0PB43              	100.00%		B3L8U1              	100.00%
Bootstrap support for L0PB43 as seed ortholog is 100%.
Bootstrap support for B3L8U1 as seed ortholog is 100%.

Group of orthologs #19. Best score 816 bits
Score difference with first non-orthologous sequence - P.jiroveci:816 P.knowlesi:816

L0PGJ4              	100.00%		B3L7A0              	100.00%
Bootstrap support for L0PGJ4 as seed ortholog is 100%.
Bootstrap support for B3L7A0 as seed ortholog is 100%.

Group of orthologs #20. Best score 805 bits
Score difference with first non-orthologous sequence - P.jiroveci:805 P.knowlesi:521

L0PBE4              	100.00%		B3L3G9              	100.00%
Bootstrap support for L0PBE4 as seed ortholog is 100%.
Bootstrap support for B3L3G9 as seed ortholog is 100%.

Group of orthologs #21. Best score 791 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 P.knowlesi:314

L0PFC8              	100.00%		B3L2J4              	100.00%
Bootstrap support for L0PFC8 as seed ortholog is 99%.
Bootstrap support for B3L2J4 as seed ortholog is 100%.

Group of orthologs #22. Best score 771 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 P.knowlesi:633

L0PDB3              	100.00%		B3L9E5              	100.00%
Bootstrap support for L0PDB3 as seed ortholog is 99%.
Bootstrap support for B3L9E5 as seed ortholog is 100%.

Group of orthologs #23. Best score 769 bits
Score difference with first non-orthologous sequence - P.jiroveci:608 P.knowlesi:669

L0PFS2              	100.00%		B3L5E9              	100.00%
Bootstrap support for L0PFS2 as seed ortholog is 100%.
Bootstrap support for B3L5E9 as seed ortholog is 100%.

Group of orthologs #24. Best score 767 bits
Score difference with first non-orthologous sequence - P.jiroveci:767 P.knowlesi:767

L0P9H4              	100.00%		B3L2B2              	100.00%
Bootstrap support for L0P9H4 as seed ortholog is 100%.
Bootstrap support for B3L2B2 as seed ortholog is 100%.

Group of orthologs #25. Best score 757 bits
Score difference with first non-orthologous sequence - P.jiroveci:564 P.knowlesi:613

L0PFV0              	100.00%		B3L2J7              	100.00%
Bootstrap support for L0PFV0 as seed ortholog is 100%.
Bootstrap support for B3L2J7 as seed ortholog is 100%.

Group of orthologs #26. Best score 755 bits
Score difference with first non-orthologous sequence - P.jiroveci:173 P.knowlesi:330

L0PB13              	100.00%		B3L6X8              	100.00%
Bootstrap support for L0PB13 as seed ortholog is 99%.
Bootstrap support for B3L6X8 as seed ortholog is 100%.

Group of orthologs #27. Best score 754 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.knowlesi:754

L0P8X7              	100.00%		B3L263              	100.00%
Bootstrap support for L0P8X7 as seed ortholog is 87%.
Bootstrap support for B3L263 as seed ortholog is 100%.

Group of orthologs #28. Best score 750 bits
Score difference with first non-orthologous sequence - P.jiroveci:750 P.knowlesi:750

L0PCR2              	100.00%		B3L7Y9              	100.00%
Bootstrap support for L0PCR2 as seed ortholog is 100%.
Bootstrap support for B3L7Y9 as seed ortholog is 100%.

Group of orthologs #29. Best score 740 bits
Score difference with first non-orthologous sequence - P.jiroveci:740 P.knowlesi:270

L0PEW0              	100.00%		B3L842              	100.00%
Bootstrap support for L0PEW0 as seed ortholog is 100%.
Bootstrap support for B3L842 as seed ortholog is 99%.

Group of orthologs #30. Best score 735 bits
Score difference with first non-orthologous sequence - P.jiroveci:735 P.knowlesi:735

L0PGR4              	100.00%		B3L184              	100.00%
L0PFQ2              	92.83%		
Bootstrap support for L0PGR4 as seed ortholog is 100%.
Bootstrap support for B3L184 as seed ortholog is 100%.

Group of orthologs #31. Best score 733 bits
Score difference with first non-orthologous sequence - P.jiroveci:733 P.knowlesi:733

L0PDF1              	100.00%		B3L6T7              	100.00%
Bootstrap support for L0PDF1 as seed ortholog is 100%.
Bootstrap support for B3L6T7 as seed ortholog is 100%.

Group of orthologs #32. Best score 728 bits
Score difference with first non-orthologous sequence - P.jiroveci:562 P.knowlesi:728

L0PBQ6              	100.00%		B3L8Q4              	100.00%
Bootstrap support for L0PBQ6 as seed ortholog is 100%.
Bootstrap support for B3L8Q4 as seed ortholog is 100%.

Group of orthologs #33. Best score 722 bits
Score difference with first non-orthologous sequence - P.jiroveci:363 P.knowlesi:354

L0PCW9              	100.00%		B3KZL1              	100.00%
Bootstrap support for L0PCW9 as seed ortholog is 100%.
Bootstrap support for B3KZL1 as seed ortholog is 100%.

Group of orthologs #34. Best score 701 bits
Score difference with first non-orthologous sequence - P.jiroveci:701 P.knowlesi:358

L0PBR4              	100.00%		B3L3M0              	100.00%
Bootstrap support for L0PBR4 as seed ortholog is 100%.
Bootstrap support for B3L3M0 as seed ortholog is 100%.

Group of orthologs #35. Best score 701 bits
Score difference with first non-orthologous sequence - P.jiroveci:701 P.knowlesi:701

L0PH89              	100.00%		B3LBT4              	100.00%
Bootstrap support for L0PH89 as seed ortholog is 100%.
Bootstrap support for B3LBT4 as seed ortholog is 100%.

Group of orthologs #36. Best score 668 bits
Score difference with first non-orthologous sequence - P.jiroveci:668 P.knowlesi:473

L0PD55              	100.00%		B3L315              	100.00%
Bootstrap support for L0PD55 as seed ortholog is 100%.
Bootstrap support for B3L315 as seed ortholog is 100%.

Group of orthologs #37. Best score 658 bits
Score difference with first non-orthologous sequence - P.jiroveci:658 P.knowlesi:658

L0PDQ4              	100.00%		B3L6U2              	100.00%
Bootstrap support for L0PDQ4 as seed ortholog is 100%.
Bootstrap support for B3L6U2 as seed ortholog is 100%.

Group of orthologs #38. Best score 654 bits
Score difference with first non-orthologous sequence - P.jiroveci:343 P.knowlesi:654

L0PBA5              	100.00%		B3L753              	100.00%
Bootstrap support for L0PBA5 as seed ortholog is 100%.
Bootstrap support for B3L753 as seed ortholog is 100%.

Group of orthologs #39. Best score 653 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 P.knowlesi:527

L0PG21              	100.00%		B3L4J4              	100.00%
Bootstrap support for L0PG21 as seed ortholog is 100%.
Bootstrap support for B3L4J4 as seed ortholog is 100%.

Group of orthologs #40. Best score 638 bits
Score difference with first non-orthologous sequence - P.jiroveci:638 P.knowlesi:638

L0PCC4              	100.00%		B3L997              	100.00%
Bootstrap support for L0PCC4 as seed ortholog is 100%.
Bootstrap support for B3L997 as seed ortholog is 100%.

Group of orthologs #41. Best score 638 bits
Score difference with first non-orthologous sequence - P.jiroveci:581 P.knowlesi:638

L0PEP7              	100.00%		B3L7Y7              	100.00%
Bootstrap support for L0PEP7 as seed ortholog is 100%.
Bootstrap support for B3L7Y7 as seed ortholog is 100%.

Group of orthologs #42. Best score 635 bits
Score difference with first non-orthologous sequence - P.jiroveci:635 P.knowlesi:635

L0P9U5              	100.00%		B3L565              	100.00%
Bootstrap support for L0P9U5 as seed ortholog is 100%.
Bootstrap support for B3L565 as seed ortholog is 100%.

Group of orthologs #43. Best score 634 bits
Score difference with first non-orthologous sequence - P.jiroveci:634 P.knowlesi:141

L0P9C7              	100.00%		B3L1E0              	100.00%
Bootstrap support for L0P9C7 as seed ortholog is 100%.
Bootstrap support for B3L1E0 as seed ortholog is 99%.

Group of orthologs #44. Best score 623 bits
Score difference with first non-orthologous sequence - P.jiroveci:240 P.knowlesi:623

L0P833              	100.00%		B3L0I2              	100.00%
Bootstrap support for L0P833 as seed ortholog is 100%.
Bootstrap support for B3L0I2 as seed ortholog is 100%.

Group of orthologs #45. Best score 618 bits
Score difference with first non-orthologous sequence - P.jiroveci:618 P.knowlesi:618

L0P7V0              	100.00%		B3L369              	100.00%
Bootstrap support for L0P7V0 as seed ortholog is 100%.
Bootstrap support for B3L369 as seed ortholog is 100%.

Group of orthologs #46. Best score 615 bits
Score difference with first non-orthologous sequence - P.jiroveci:615 P.knowlesi:492

L0PGL8              	100.00%		B3LC00              	100.00%
Bootstrap support for L0PGL8 as seed ortholog is 100%.
Bootstrap support for B3LC00 as seed ortholog is 100%.

Group of orthologs #47. Best score 611 bits
Score difference with first non-orthologous sequence - P.jiroveci:230 P.knowlesi:212

L0PA91              	100.00%		B3LDA3              	100.00%
                    	       		B3LAP0              	12.67%
Bootstrap support for L0PA91 as seed ortholog is 100%.
Bootstrap support for B3LDA3 as seed ortholog is 100%.

Group of orthologs #48. Best score 610 bits
Score difference with first non-orthologous sequence - P.jiroveci:610 P.knowlesi:439

L0P945              	100.00%		B3L5D0              	100.00%
Bootstrap support for L0P945 as seed ortholog is 100%.
Bootstrap support for B3L5D0 as seed ortholog is 100%.

Group of orthologs #49. Best score 604 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 P.knowlesi:314

L0PB83              	100.00%		B3L193              	100.00%
Bootstrap support for L0PB83 as seed ortholog is 99%.
Bootstrap support for B3L193 as seed ortholog is 100%.

Group of orthologs #50. Best score 600 bits
Score difference with first non-orthologous sequence - P.jiroveci:476 P.knowlesi:600

L0P8C8              	100.00%		B3L9Q6              	100.00%
Bootstrap support for L0P8C8 as seed ortholog is 100%.
Bootstrap support for B3L9Q6 as seed ortholog is 100%.

Group of orthologs #51. Best score 597 bits
Score difference with first non-orthologous sequence - P.jiroveci:406 P.knowlesi:363

L0P853              	100.00%		B3L3Z3              	100.00%
L0P8M8              	55.04%		
Bootstrap support for L0P853 as seed ortholog is 100%.
Bootstrap support for B3L3Z3 as seed ortholog is 100%.

Group of orthologs #52. Best score 589 bits
Score difference with first non-orthologous sequence - P.jiroveci:589 P.knowlesi:409

L0PGA5              	100.00%		B3L402              	100.00%
Bootstrap support for L0PGA5 as seed ortholog is 100%.
Bootstrap support for B3L402 as seed ortholog is 100%.

Group of orthologs #53. Best score 589 bits
Score difference with first non-orthologous sequence - P.jiroveci:589 P.knowlesi:589

L0PF66              	100.00%		B3L7U8              	100.00%
Bootstrap support for L0PF66 as seed ortholog is 100%.
Bootstrap support for B3L7U8 as seed ortholog is 100%.

Group of orthologs #54. Best score 579 bits
Score difference with first non-orthologous sequence - P.jiroveci:579 P.knowlesi:579

L0PFF6              	100.00%		B3L8H1              	100.00%
Bootstrap support for L0PFF6 as seed ortholog is 100%.
Bootstrap support for B3L8H1 as seed ortholog is 100%.

Group of orthologs #55. Best score 577 bits
Score difference with first non-orthologous sequence - P.jiroveci:577 P.knowlesi:418

L0PER6              	100.00%		B3L4C8              	100.00%
Bootstrap support for L0PER6 as seed ortholog is 100%.
Bootstrap support for B3L4C8 as seed ortholog is 100%.

Group of orthologs #56. Best score 576 bits
Score difference with first non-orthologous sequence - P.jiroveci:576 P.knowlesi:576

L0P915              	100.00%		B3L7I1              	100.00%
Bootstrap support for L0P915 as seed ortholog is 100%.
Bootstrap support for B3L7I1 as seed ortholog is 100%.

Group of orthologs #57. Best score 574 bits
Score difference with first non-orthologous sequence - P.jiroveci:428 P.knowlesi:200

L0PAG9              	100.00%		B3LCM2              	100.00%
Bootstrap support for L0PAG9 as seed ortholog is 100%.
Bootstrap support for B3LCM2 as seed ortholog is 99%.

Group of orthologs #58. Best score 572 bits
Score difference with first non-orthologous sequence - P.jiroveci:572 P.knowlesi:402

L0PG45              	100.00%		B3L4B5              	100.00%
Bootstrap support for L0PG45 as seed ortholog is 100%.
Bootstrap support for B3L4B5 as seed ortholog is 100%.

Group of orthologs #59. Best score 571 bits
Score difference with first non-orthologous sequence - P.jiroveci:571 P.knowlesi:215

L0PDM6              	100.00%		B3L3U9              	100.00%
Bootstrap support for L0PDM6 as seed ortholog is 100%.
Bootstrap support for B3L3U9 as seed ortholog is 100%.

Group of orthologs #60. Best score 571 bits
Score difference with first non-orthologous sequence - P.jiroveci:571 P.knowlesi:390

L0P976              	100.00%		B3LCT4              	100.00%
Bootstrap support for L0P976 as seed ortholog is 100%.
Bootstrap support for B3LCT4 as seed ortholog is 100%.

Group of orthologs #61. Best score 564 bits
Score difference with first non-orthologous sequence - P.jiroveci:564 P.knowlesi:564

L0P9W2              	100.00%		B3L4J0              	100.00%
Bootstrap support for L0P9W2 as seed ortholog is 100%.
Bootstrap support for B3L4J0 as seed ortholog is 100%.

Group of orthologs #62. Best score 563 bits
Score difference with first non-orthologous sequence - P.jiroveci:563 P.knowlesi:273

L0PCK0              	100.00%		B3LCP8              	100.00%
L0P7U1              	99.28%		
Bootstrap support for L0PCK0 as seed ortholog is 100%.
Bootstrap support for B3LCP8 as seed ortholog is 99%.

Group of orthologs #63. Best score 562 bits
Score difference with first non-orthologous sequence - P.jiroveci:562 P.knowlesi:562

L0P7X5              	100.00%		B3L2D7              	100.00%
Bootstrap support for L0P7X5 as seed ortholog is 100%.
Bootstrap support for B3L2D7 as seed ortholog is 100%.

Group of orthologs #64. Best score 557 bits
Score difference with first non-orthologous sequence - P.jiroveci:305 P.knowlesi:125

L0PBP8              	100.00%		B3LCX4              	100.00%
Bootstrap support for L0PBP8 as seed ortholog is 100%.
Bootstrap support for B3LCX4 as seed ortholog is 98%.

Group of orthologs #65. Best score 553 bits
Score difference with first non-orthologous sequence - P.jiroveci:553 P.knowlesi:170

L0P9P7              	100.00%		B3L5F6              	100.00%
Bootstrap support for L0P9P7 as seed ortholog is 100%.
Bootstrap support for B3L5F6 as seed ortholog is 99%.

Group of orthologs #66. Best score 548 bits
Score difference with first non-orthologous sequence - P.jiroveci:170 P.knowlesi:281

L0PBH4              	100.00%		B3LAL6              	100.00%
Bootstrap support for L0PBH4 as seed ortholog is 100%.
Bootstrap support for B3LAL6 as seed ortholog is 100%.

Group of orthologs #67. Best score 530 bits
Score difference with first non-orthologous sequence - P.jiroveci:530 P.knowlesi:84

L0PAW9              	100.00%		B3LCL1              	100.00%
L0PBZ0              	83.25%		
Bootstrap support for L0PAW9 as seed ortholog is 100%.
Bootstrap support for B3LCL1 as seed ortholog is 93%.

Group of orthologs #68. Best score 527 bits
Score difference with first non-orthologous sequence - P.jiroveci:527 P.knowlesi:527

L0PEL5              	100.00%		B3L0J2              	100.00%
L0PGC2              	56.16%		
Bootstrap support for L0PEL5 as seed ortholog is 100%.
Bootstrap support for B3L0J2 as seed ortholog is 100%.

Group of orthologs #69. Best score 527 bits
Score difference with first non-orthologous sequence - P.jiroveci:470 P.knowlesi:527

L0P7V1              	100.00%		B3KZW6              	100.00%
Bootstrap support for L0P7V1 as seed ortholog is 100%.
Bootstrap support for B3KZW6 as seed ortholog is 100%.

Group of orthologs #70. Best score 526 bits
Score difference with first non-orthologous sequence - P.jiroveci:526 P.knowlesi:526

L0PAG2              	100.00%		B3LCD4              	100.00%
Bootstrap support for L0PAG2 as seed ortholog is 100%.
Bootstrap support for B3LCD4 as seed ortholog is 100%.

Group of orthologs #71. Best score 522 bits
Score difference with first non-orthologous sequence - P.jiroveci:223 P.knowlesi:522

L0PFG7              	100.00%		B3L892              	100.00%
Bootstrap support for L0PFG7 as seed ortholog is 100%.
Bootstrap support for B3L892 as seed ortholog is 100%.

Group of orthologs #72. Best score 521 bits
Score difference with first non-orthologous sequence - P.jiroveci:521 P.knowlesi:270

L0P9I8              	100.00%		B3L5Y2              	100.00%
Bootstrap support for L0P9I8 as seed ortholog is 100%.
Bootstrap support for B3L5Y2 as seed ortholog is 100%.

Group of orthologs #73. Best score 514 bits
Score difference with first non-orthologous sequence - P.jiroveci:267 P.knowlesi:318

L0P8E7              	100.00%		B3L794              	100.00%
Bootstrap support for L0P8E7 as seed ortholog is 100%.
Bootstrap support for B3L794 as seed ortholog is 100%.

Group of orthologs #74. Best score 511 bits
Score difference with first non-orthologous sequence - P.jiroveci:511 P.knowlesi:511

L0PFU4              	100.00%		B3L4H1              	100.00%
Bootstrap support for L0PFU4 as seed ortholog is 100%.
Bootstrap support for B3L4H1 as seed ortholog is 100%.

Group of orthologs #75. Best score 508 bits
Score difference with first non-orthologous sequence - P.jiroveci:508 P.knowlesi:508

L0PAP2              	100.00%		B3L6H5              	100.00%
Bootstrap support for L0PAP2 as seed ortholog is 100%.
Bootstrap support for B3L6H5 as seed ortholog is 100%.

Group of orthologs #76. Best score 498 bits
Score difference with first non-orthologous sequence - P.jiroveci:498 P.knowlesi:27

L0PG61              	100.00%		B3LCI6              	100.00%
L0PAC9              	8.45%		
Bootstrap support for L0PG61 as seed ortholog is 100%.
Bootstrap support for B3LCI6 as seed ortholog is 72%.
Alternative seed ortholog is B3L419 (27 bits away from this cluster)

Group of orthologs #77. Best score 498 bits
Score difference with first non-orthologous sequence - P.jiroveci:498 P.knowlesi:498

L0PFJ0              	100.00%		B3L4W9              	100.00%
Bootstrap support for L0PFJ0 as seed ortholog is 100%.
Bootstrap support for B3L4W9 as seed ortholog is 100%.

Group of orthologs #78. Best score 496 bits
Score difference with first non-orthologous sequence - P.jiroveci:267 P.knowlesi:241

L0PCT0              	100.00%		B3L682              	100.00%
Bootstrap support for L0PCT0 as seed ortholog is 100%.
Bootstrap support for B3L682 as seed ortholog is 99%.

Group of orthologs #79. Best score 495 bits
Score difference with first non-orthologous sequence - P.jiroveci:495 P.knowlesi:495

L0P9D4              	100.00%		B3L240              	100.00%
Bootstrap support for L0P9D4 as seed ortholog is 100%.
Bootstrap support for B3L240 as seed ortholog is 100%.

Group of orthologs #80. Best score 493 bits
Score difference with first non-orthologous sequence - P.jiroveci:493 P.knowlesi:493

L0P8W6              	100.00%		B3LAJ1              	100.00%
Bootstrap support for L0P8W6 as seed ortholog is 100%.
Bootstrap support for B3LAJ1 as seed ortholog is 100%.

Group of orthologs #81. Best score 493 bits
Score difference with first non-orthologous sequence - P.jiroveci:493 P.knowlesi:279

L0PGT9              	100.00%		B3L9L0              	100.00%
Bootstrap support for L0PGT9 as seed ortholog is 100%.
Bootstrap support for B3L9L0 as seed ortholog is 100%.

Group of orthologs #82. Best score 491 bits
Score difference with first non-orthologous sequence - P.jiroveci:491 P.knowlesi:273

L0PAR0              	100.00%		B3KZB0              	100.00%
Bootstrap support for L0PAR0 as seed ortholog is 100%.
Bootstrap support for B3KZB0 as seed ortholog is 100%.

Group of orthologs #83. Best score 489 bits
Score difference with first non-orthologous sequence - P.jiroveci:105 P.knowlesi:304

L0PE26              	100.00%		B3KZB3              	100.00%
Bootstrap support for L0PE26 as seed ortholog is 97%.
Bootstrap support for B3KZB3 as seed ortholog is 100%.

Group of orthologs #84. Best score 485 bits
Score difference with first non-orthologous sequence - P.jiroveci:485 P.knowlesi:485

L0PH85              	100.00%		B3L8A1              	100.00%
Bootstrap support for L0PH85 as seed ortholog is 100%.
Bootstrap support for B3L8A1 as seed ortholog is 100%.

Group of orthologs #85. Best score 484 bits
Score difference with first non-orthologous sequence - P.jiroveci:484 P.knowlesi:285

L0P7L0              	100.00%		B3L6I2              	100.00%
L0PCI7              	48.33%		
Bootstrap support for L0P7L0 as seed ortholog is 100%.
Bootstrap support for B3L6I2 as seed ortholog is 100%.

Group of orthologs #86. Best score 484 bits
Score difference with first non-orthologous sequence - P.jiroveci:484 P.knowlesi:484

L0PC65              	100.00%		B3LAR4              	100.00%
Bootstrap support for L0PC65 as seed ortholog is 100%.
Bootstrap support for B3LAR4 as seed ortholog is 100%.

Group of orthologs #87. Best score 479 bits
Score difference with first non-orthologous sequence - P.jiroveci:183 P.knowlesi:275

L0PA75              	100.00%		B3LBS6              	100.00%
Bootstrap support for L0PA75 as seed ortholog is 99%.
Bootstrap support for B3LBS6 as seed ortholog is 100%.

Group of orthologs #88. Best score 479 bits
Score difference with first non-orthologous sequence - P.jiroveci:479 P.knowlesi:479

L0PE96              	100.00%		B3L866              	100.00%
Bootstrap support for L0PE96 as seed ortholog is 100%.
Bootstrap support for B3L866 as seed ortholog is 100%.

Group of orthologs #89. Best score 476 bits
Score difference with first non-orthologous sequence - P.jiroveci:273 P.knowlesi:275

L0P7V6              	100.00%		B3L971              	100.00%
Bootstrap support for L0P7V6 as seed ortholog is 100%.
Bootstrap support for B3L971 as seed ortholog is 100%.

Group of orthologs #90. Best score 472 bits
Score difference with first non-orthologous sequence - P.jiroveci:472 P.knowlesi:472

L0PCP1              	100.00%		B3LD81              	100.00%
Bootstrap support for L0PCP1 as seed ortholog is 100%.
Bootstrap support for B3LD81 as seed ortholog is 100%.

Group of orthologs #91. Best score 471 bits
Score difference with first non-orthologous sequence - P.jiroveci:471 P.knowlesi:471

L0PDK6              	100.00%		B3L694              	100.00%
Bootstrap support for L0PDK6 as seed ortholog is 100%.
Bootstrap support for B3L694 as seed ortholog is 100%.

Group of orthologs #92. Best score 467 bits
Score difference with first non-orthologous sequence - P.jiroveci:467 P.knowlesi:467

L0PD31              	100.00%		B3LBY6              	100.00%
Bootstrap support for L0PD31 as seed ortholog is 100%.
Bootstrap support for B3LBY6 as seed ortholog is 100%.

Group of orthologs #93. Best score 466 bits
Score difference with first non-orthologous sequence - P.jiroveci:466 P.knowlesi:466

L0PA45              	100.00%		B3LAH4              	100.00%
Bootstrap support for L0PA45 as seed ortholog is 100%.
Bootstrap support for B3LAH4 as seed ortholog is 100%.

Group of orthologs #94. Best score 465 bits
Score difference with first non-orthologous sequence - P.jiroveci:465 P.knowlesi:465

L0PDC9              	100.00%		B3LD12              	100.00%
Bootstrap support for L0PDC9 as seed ortholog is 100%.
Bootstrap support for B3LD12 as seed ortholog is 100%.

Group of orthologs #95. Best score 463 bits
Score difference with first non-orthologous sequence - P.jiroveci:463 P.knowlesi:463

L0PBJ8              	100.00%		B3KZC7              	100.00%
Bootstrap support for L0PBJ8 as seed ortholog is 100%.
Bootstrap support for B3KZC7 as seed ortholog is 100%.

Group of orthologs #96. Best score 463 bits
Score difference with first non-orthologous sequence - P.jiroveci:329 P.knowlesi:346

L0PE30              	100.00%		B3L4N6              	100.00%
Bootstrap support for L0PE30 as seed ortholog is 100%.
Bootstrap support for B3L4N6 as seed ortholog is 100%.

Group of orthologs #97. Best score 461 bits
Score difference with first non-orthologous sequence - P.jiroveci:461 P.knowlesi:461

L0PFQ5              	100.00%		B3LBK2              	100.00%
Bootstrap support for L0PFQ5 as seed ortholog is 100%.
Bootstrap support for B3LBK2 as seed ortholog is 100%.

Group of orthologs #98. Best score 460 bits
Score difference with first non-orthologous sequence - P.jiroveci:460 P.knowlesi:460

L0P9G2              	100.00%		B3L8S5              	100.00%
Bootstrap support for L0P9G2 as seed ortholog is 100%.
Bootstrap support for B3L8S5 as seed ortholog is 100%.

Group of orthologs #99. Best score 458 bits
Score difference with first non-orthologous sequence - P.jiroveci:458 P.knowlesi:318

L0PGS4              	100.00%		B3L7W9              	100.00%
Bootstrap support for L0PGS4 as seed ortholog is 100%.
Bootstrap support for B3L7W9 as seed ortholog is 100%.

Group of orthologs #100. Best score 455 bits
Score difference with first non-orthologous sequence - P.jiroveci:455 P.knowlesi:455

L0P7P1              	100.00%		B3L613              	100.00%
Bootstrap support for L0P7P1 as seed ortholog is 100%.
Bootstrap support for B3L613 as seed ortholog is 100%.

Group of orthologs #101. Best score 451 bits
Score difference with first non-orthologous sequence - P.jiroveci:451 P.knowlesi:451

L0PDI4              	100.00%		B3L8U0              	100.00%
Bootstrap support for L0PDI4 as seed ortholog is 100%.
Bootstrap support for B3L8U0 as seed ortholog is 100%.

Group of orthologs #102. Best score 450 bits
Score difference with first non-orthologous sequence - P.jiroveci:150 P.knowlesi:450

L0PCK5              	100.00%		B3L2S3              	100.00%
L0PGY9              	13.82%		
Bootstrap support for L0PCK5 as seed ortholog is 99%.
Bootstrap support for B3L2S3 as seed ortholog is 100%.

Group of orthologs #103. Best score 446 bits
Score difference with first non-orthologous sequence - P.jiroveci:375 P.knowlesi:446

L0PBW1              	100.00%		B3LC85              	100.00%
Bootstrap support for L0PBW1 as seed ortholog is 100%.
Bootstrap support for B3LC85 as seed ortholog is 100%.

Group of orthologs #104. Best score 443 bits
Score difference with first non-orthologous sequence - P.jiroveci:443 P.knowlesi:443

L0P7N3              	100.00%		B3L2M5              	100.00%
Bootstrap support for L0P7N3 as seed ortholog is 100%.
Bootstrap support for B3L2M5 as seed ortholog is 100%.

Group of orthologs #105. Best score 441 bits
Score difference with first non-orthologous sequence - P.jiroveci:117 P.knowlesi:383

L0P890              	100.00%		B3L5H4              	100.00%
Bootstrap support for L0P890 as seed ortholog is 99%.
Bootstrap support for B3L5H4 as seed ortholog is 100%.

Group of orthologs #106. Best score 441 bits
Score difference with first non-orthologous sequence - P.jiroveci:179 P.knowlesi:441

L0PG07              	100.00%		B3KZ01              	100.00%
Bootstrap support for L0PG07 as seed ortholog is 99%.
Bootstrap support for B3KZ01 as seed ortholog is 100%.

Group of orthologs #107. Best score 438 bits
Score difference with first non-orthologous sequence - P.jiroveci:251 P.knowlesi:230

L0PC64              	100.00%		B3L1P5              	100.00%
Bootstrap support for L0PC64 as seed ortholog is 100%.
Bootstrap support for B3L1P5 as seed ortholog is 100%.

Group of orthologs #108. Best score 437 bits
Score difference with first non-orthologous sequence - P.jiroveci:437 P.knowlesi:437

L0P773              	100.00%		B3L0U2              	100.00%
Bootstrap support for L0P773 as seed ortholog is 100%.
Bootstrap support for B3L0U2 as seed ortholog is 100%.

Group of orthologs #109. Best score 437 bits
Score difference with first non-orthologous sequence - P.jiroveci:437 P.knowlesi:437

L0PBJ1              	100.00%		B3LD39              	100.00%
Bootstrap support for L0PBJ1 as seed ortholog is 100%.
Bootstrap support for B3LD39 as seed ortholog is 100%.

Group of orthologs #110. Best score 436 bits
Score difference with first non-orthologous sequence - P.jiroveci:436 P.knowlesi:436

L0PBV5              	100.00%		B3L5Z1              	100.00%
Bootstrap support for L0PBV5 as seed ortholog is 100%.
Bootstrap support for B3L5Z1 as seed ortholog is 100%.

Group of orthologs #111. Best score 433 bits
Score difference with first non-orthologous sequence - P.jiroveci:433 P.knowlesi:433

L0PCV7              	100.00%		B3L7S4              	100.00%
Bootstrap support for L0PCV7 as seed ortholog is 100%.
Bootstrap support for B3L7S4 as seed ortholog is 100%.

Group of orthologs #112. Best score 429 bits
Score difference with first non-orthologous sequence - P.jiroveci:429 P.knowlesi:429

L0PAQ1              	100.00%		B3L3R6              	100.00%
Bootstrap support for L0PAQ1 as seed ortholog is 100%.
Bootstrap support for B3L3R6 as seed ortholog is 100%.

Group of orthologs #113. Best score 427 bits
Score difference with first non-orthologous sequence - P.jiroveci:427 P.knowlesi:427

L0PBR9              	100.00%		B3L2N9              	100.00%
Bootstrap support for L0PBR9 as seed ortholog is 100%.
Bootstrap support for B3L2N9 as seed ortholog is 100%.

Group of orthologs #114. Best score 427 bits
Score difference with first non-orthologous sequence - P.jiroveci:427 P.knowlesi:427

L0PDJ1              	100.00%		B3L654              	100.00%
Bootstrap support for L0PDJ1 as seed ortholog is 100%.
Bootstrap support for B3L654 as seed ortholog is 100%.

Group of orthologs #115. Best score 426 bits
Score difference with first non-orthologous sequence - P.jiroveci:426 P.knowlesi:129

L0PDY0              	100.00%		B3LCA3              	100.00%
Bootstrap support for L0PDY0 as seed ortholog is 100%.
Bootstrap support for B3LCA3 as seed ortholog is 99%.

Group of orthologs #116. Best score 421 bits
Score difference with first non-orthologous sequence - P.jiroveci:421 P.knowlesi:74

L0PF72              	100.00%		B3L2D6              	100.00%
L0P9J9              	8.71%		
Bootstrap support for L0PF72 as seed ortholog is 100%.
Bootstrap support for B3L2D6 as seed ortholog is 90%.

Group of orthologs #117. Best score 421 bits
Score difference with first non-orthologous sequence - P.jiroveci:421 P.knowlesi:421

L0PB35              	100.00%		B3LAR0              	100.00%
Bootstrap support for L0PB35 as seed ortholog is 100%.
Bootstrap support for B3LAR0 as seed ortholog is 100%.

Group of orthologs #118. Best score 420 bits
Score difference with first non-orthologous sequence - P.jiroveci:420 P.knowlesi:420

L0P7T0              	100.00%		B3L6G4              	100.00%
Bootstrap support for L0P7T0 as seed ortholog is 100%.
Bootstrap support for B3L6G4 as seed ortholog is 100%.

Group of orthologs #119. Best score 417 bits
Score difference with first non-orthologous sequence - P.jiroveci:343 P.knowlesi:417

L0PG55              	100.00%		B3LD69              	100.00%
Bootstrap support for L0PG55 as seed ortholog is 100%.
Bootstrap support for B3LD69 as seed ortholog is 100%.

Group of orthologs #120. Best score 416 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.knowlesi:416

L0P7N1              	100.00%		B3L538              	100.00%
Bootstrap support for L0P7N1 as seed ortholog is 99%.
Bootstrap support for B3L538 as seed ortholog is 100%.

Group of orthologs #121. Best score 416 bits
Score difference with first non-orthologous sequence - P.jiroveci:416 P.knowlesi:416

L0P9S1              	100.00%		B3L4D2              	100.00%
Bootstrap support for L0P9S1 as seed ortholog is 100%.
Bootstrap support for B3L4D2 as seed ortholog is 100%.

Group of orthologs #122. Best score 414 bits
Score difference with first non-orthologous sequence - P.jiroveci:414 P.knowlesi:414

L0PFN9              	100.00%		B3L9R6              	100.00%
L0PEF0              	8.70%		
Bootstrap support for L0PFN9 as seed ortholog is 100%.
Bootstrap support for B3L9R6 as seed ortholog is 100%.

Group of orthologs #123. Best score 412 bits
Score difference with first non-orthologous sequence - P.jiroveci:412 P.knowlesi:412

L0P8R6              	100.00%		B3L8C2              	100.00%
Bootstrap support for L0P8R6 as seed ortholog is 100%.
Bootstrap support for B3L8C2 as seed ortholog is 100%.

Group of orthologs #124. Best score 410 bits
Score difference with first non-orthologous sequence - P.jiroveci:410 P.knowlesi:410

L0PC79              	100.00%		B3KZ79              	100.00%
Bootstrap support for L0PC79 as seed ortholog is 100%.
Bootstrap support for B3KZ79 as seed ortholog is 100%.

Group of orthologs #125. Best score 409 bits
Score difference with first non-orthologous sequence - P.jiroveci:409 P.knowlesi:107

L0PA85              	100.00%		B3L3A6              	100.00%
Bootstrap support for L0PA85 as seed ortholog is 100%.
Bootstrap support for B3L3A6 as seed ortholog is 98%.

Group of orthologs #126. Best score 409 bits
Score difference with first non-orthologous sequence - P.jiroveci:409 P.knowlesi:409

L0PDU2              	100.00%		B3L6G7              	100.00%
Bootstrap support for L0PDU2 as seed ortholog is 100%.
Bootstrap support for B3L6G7 as seed ortholog is 100%.

Group of orthologs #127. Best score 406 bits
Score difference with first non-orthologous sequence - P.jiroveci:406 P.knowlesi:346

L0PB50              	100.00%		B3LBE8              	100.00%
Bootstrap support for L0PB50 as seed ortholog is 100%.
Bootstrap support for B3LBE8 as seed ortholog is 100%.

Group of orthologs #128. Best score 406 bits
Score difference with first non-orthologous sequence - P.jiroveci:406 P.knowlesi:317

L0PCX1              	100.00%		B3LD11              	100.00%
Bootstrap support for L0PCX1 as seed ortholog is 100%.
Bootstrap support for B3LD11 as seed ortholog is 100%.

Group of orthologs #129. Best score 405 bits
Score difference with first non-orthologous sequence - P.jiroveci:405 P.knowlesi:32

L0PGU1              	100.00%		B3L5K9              	100.00%
Bootstrap support for L0PGU1 as seed ortholog is 100%.
Bootstrap support for B3L5K9 as seed ortholog is 57%.
Alternative seed ortholog is B3L8H3 (32 bits away from this cluster)

Group of orthologs #130. Best score 404 bits
Score difference with first non-orthologous sequence - P.jiroveci:253 P.knowlesi:404

L0P7R1              	100.00%		B3KZP7              	100.00%
Bootstrap support for L0P7R1 as seed ortholog is 100%.
Bootstrap support for B3KZP7 as seed ortholog is 100%.

Group of orthologs #131. Best score 404 bits
Score difference with first non-orthologous sequence - P.jiroveci:159 P.knowlesi:155

L0PG32              	100.00%		B3LBA5              	100.00%
Bootstrap support for L0PG32 as seed ortholog is 99%.
Bootstrap support for B3LBA5 as seed ortholog is 99%.

Group of orthologs #132. Best score 401 bits
Score difference with first non-orthologous sequence - P.jiroveci:401 P.knowlesi:401

L0PC37              	100.00%		B3L729              	100.00%
Bootstrap support for L0PC37 as seed ortholog is 100%.
Bootstrap support for B3L729 as seed ortholog is 100%.

Group of orthologs #133. Best score 400 bits
Score difference with first non-orthologous sequence - P.jiroveci:400 P.knowlesi:400

L0PBW7              	100.00%		B3L6B4              	100.00%
Bootstrap support for L0PBW7 as seed ortholog is 100%.
Bootstrap support for B3L6B4 as seed ortholog is 100%.

Group of orthologs #134. Best score 399 bits
Score difference with first non-orthologous sequence - P.jiroveci:399 P.knowlesi:399

L0PDH7              	100.00%		B3L4M7              	100.00%
Bootstrap support for L0PDH7 as seed ortholog is 100%.
Bootstrap support for B3L4M7 as seed ortholog is 100%.

Group of orthologs #135. Best score 398 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 P.knowlesi:91

L0PEK2              	100.00%		B3LBI8              	100.00%
Bootstrap support for L0PEK2 as seed ortholog is 99%.
Bootstrap support for B3LBI8 as seed ortholog is 85%.

Group of orthologs #136. Best score 394 bits
Score difference with first non-orthologous sequence - P.jiroveci:394 P.knowlesi:394

L0PF49              	100.00%		B3L287              	100.00%
Bootstrap support for L0PF49 as seed ortholog is 100%.
Bootstrap support for B3L287 as seed ortholog is 100%.

Group of orthologs #137. Best score 394 bits
Score difference with first non-orthologous sequence - P.jiroveci:394 P.knowlesi:394

L0PHB7              	100.00%		B3L9M2              	100.00%
Bootstrap support for L0PHB7 as seed ortholog is 100%.
Bootstrap support for B3L9M2 as seed ortholog is 100%.

Group of orthologs #138. Best score 392 bits
Score difference with first non-orthologous sequence - P.jiroveci:392 P.knowlesi:250

L0P8N1              	100.00%		B3L746              	100.00%
Bootstrap support for L0P8N1 as seed ortholog is 100%.
Bootstrap support for B3L746 as seed ortholog is 100%.

Group of orthologs #139. Best score 391 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:75

L0PFS3              	100.00%		B3L454              	100.00%
Bootstrap support for L0PFS3 as seed ortholog is 97%.
Bootstrap support for B3L454 as seed ortholog is 98%.

Group of orthologs #140. Best score 387 bits
Score difference with first non-orthologous sequence - P.jiroveci:387 P.knowlesi:387

L0P7M4              	100.00%		B3KZZ1              	100.00%
L0PH62              	54.34%		
Bootstrap support for L0P7M4 as seed ortholog is 100%.
Bootstrap support for B3KZZ1 as seed ortholog is 100%.

Group of orthologs #141. Best score 386 bits
Score difference with first non-orthologous sequence - P.jiroveci:305 P.knowlesi:317

L0PDG5              	100.00%		B3L4H6              	100.00%
Bootstrap support for L0PDG5 as seed ortholog is 100%.
Bootstrap support for B3L4H6 as seed ortholog is 100%.

Group of orthologs #142. Best score 381 bits
Score difference with first non-orthologous sequence - P.jiroveci:381 P.knowlesi:381

L0P6Y2              	100.00%		B3KZQ8              	100.00%
Bootstrap support for L0P6Y2 as seed ortholog is 100%.
Bootstrap support for B3KZQ8 as seed ortholog is 100%.

Group of orthologs #143. Best score 381 bits
Score difference with first non-orthologous sequence - P.jiroveci:381 P.knowlesi:381

L0PER3              	100.00%		B3KZH9              	100.00%
Bootstrap support for L0PER3 as seed ortholog is 100%.
Bootstrap support for B3KZH9 as seed ortholog is 100%.

Group of orthologs #144. Best score 379 bits
Score difference with first non-orthologous sequence - P.jiroveci:379 P.knowlesi:379

L0PET9              	100.00%		B3L878              	100.00%
Bootstrap support for L0PET9 as seed ortholog is 100%.
Bootstrap support for B3L878 as seed ortholog is 100%.

Group of orthologs #145. Best score 379 bits
Score difference with first non-orthologous sequence - P.jiroveci:379 P.knowlesi:379

L0PGU0              	100.00%		B3L6Z9              	100.00%
Bootstrap support for L0PGU0 as seed ortholog is 100%.
Bootstrap support for B3L6Z9 as seed ortholog is 100%.

Group of orthologs #146. Best score 372 bits
Score difference with first non-orthologous sequence - P.jiroveci:30 P.knowlesi:55

L0PFW2              	100.00%		B3L2U9              	100.00%
Bootstrap support for L0PFW2 as seed ortholog is 79%.
Bootstrap support for B3L2U9 as seed ortholog is 89%.

Group of orthologs #147. Best score 370 bits
Score difference with first non-orthologous sequence - P.jiroveci:370 P.knowlesi:253

L0PC93              	100.00%		B3L1F8              	100.00%
Bootstrap support for L0PC93 as seed ortholog is 100%.
Bootstrap support for B3L1F8 as seed ortholog is 83%.

Group of orthologs #148. Best score 365 bits
Score difference with first non-orthologous sequence - P.jiroveci:365 P.knowlesi:365

L0P6X8              	100.00%		B3L776              	100.00%
Bootstrap support for L0P6X8 as seed ortholog is 100%.
Bootstrap support for B3L776 as seed ortholog is 100%.

Group of orthologs #149. Best score 365 bits
Score difference with first non-orthologous sequence - P.jiroveci:365 P.knowlesi:365

L0PBD7              	100.00%		B3L7D0              	100.00%
Bootstrap support for L0PBD7 as seed ortholog is 100%.
Bootstrap support for B3L7D0 as seed ortholog is 100%.

Group of orthologs #150. Best score 364 bits
Score difference with first non-orthologous sequence - P.jiroveci:364 P.knowlesi:364

L0P8M6              	100.00%		B3L5Q6              	100.00%
Bootstrap support for L0P8M6 as seed ortholog is 100%.
Bootstrap support for B3L5Q6 as seed ortholog is 100%.

Group of orthologs #151. Best score 363 bits
Score difference with first non-orthologous sequence - P.jiroveci:275 P.knowlesi:363

L0PFE7              	100.00%		B3L4U7              	100.00%
Bootstrap support for L0PFE7 as seed ortholog is 100%.
Bootstrap support for B3L4U7 as seed ortholog is 100%.

Group of orthologs #152. Best score 359 bits
Score difference with first non-orthologous sequence - P.jiroveci:359 P.knowlesi:359

L0PC99              	100.00%		B3KZ15              	100.00%
                    	       		B3LAB7              	22.95%
Bootstrap support for L0PC99 as seed ortholog is 100%.
Bootstrap support for B3KZ15 as seed ortholog is 100%.

Group of orthologs #153. Best score 359 bits
Score difference with first non-orthologous sequence - P.jiroveci:359 P.knowlesi:359

L0PG27              	100.00%		B3L046              	100.00%
Bootstrap support for L0PG27 as seed ortholog is 100%.
Bootstrap support for B3L046 as seed ortholog is 100%.

Group of orthologs #154. Best score 359 bits
Score difference with first non-orthologous sequence - P.jiroveci:359 P.knowlesi:359

L0PDI6              	100.00%		B3LC55              	100.00%
Bootstrap support for L0PDI6 as seed ortholog is 100%.
Bootstrap support for B3LC55 as seed ortholog is 100%.

Group of orthologs #155. Best score 356 bits
Score difference with first non-orthologous sequence - P.jiroveci:224 P.knowlesi:356

L0PCS3              	100.00%		B3LAE9              	100.00%
Bootstrap support for L0PCS3 as seed ortholog is 100%.
Bootstrap support for B3LAE9 as seed ortholog is 100%.

Group of orthologs #156. Best score 354 bits
Score difference with first non-orthologous sequence - P.jiroveci:354 P.knowlesi:354

L0PB98              	100.00%		B3KZK7              	100.00%
Bootstrap support for L0PB98 as seed ortholog is 100%.
Bootstrap support for B3KZK7 as seed ortholog is 100%.

Group of orthologs #157. Best score 354 bits
Score difference with first non-orthologous sequence - P.jiroveci:40 P.knowlesi:171

L0PAS3              	100.00%		B3L711              	100.00%
Bootstrap support for L0PAS3 as seed ortholog is 72%.
Alternative seed ortholog is L0P9V7 (40 bits away from this cluster)
Bootstrap support for B3L711 as seed ortholog is 99%.

Group of orthologs #158. Best score 354 bits
Score difference with first non-orthologous sequence - P.jiroveci:354 P.knowlesi:154

L0P7Y5              	100.00%		B3LCW5              	100.00%
Bootstrap support for L0P7Y5 as seed ortholog is 100%.
Bootstrap support for B3LCW5 as seed ortholog is 99%.

Group of orthologs #159. Best score 354 bits
Score difference with first non-orthologous sequence - P.jiroveci:354 P.knowlesi:140

L0PEE3              	100.00%		B3L7D9              	100.00%
Bootstrap support for L0PEE3 as seed ortholog is 100%.
Bootstrap support for B3L7D9 as seed ortholog is 99%.

Group of orthologs #160. Best score 353 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 P.knowlesi:147

L0PAY3              	100.00%		B3L755              	100.00%
Bootstrap support for L0PAY3 as seed ortholog is 91%.
Bootstrap support for B3L755 as seed ortholog is 99%.

Group of orthologs #161. Best score 351 bits
Score difference with first non-orthologous sequence - P.jiroveci:351 P.knowlesi:351

L0PCR5              	100.00%		B3LAN7              	100.00%
L0P9C2              	58.06%		
Bootstrap support for L0PCR5 as seed ortholog is 100%.
Bootstrap support for B3LAN7 as seed ortholog is 100%.

Group of orthologs #162. Best score 351 bits
Score difference with first non-orthologous sequence - P.jiroveci:351 P.knowlesi:351

L0PC44              	100.00%		B3L3U5              	100.00%
Bootstrap support for L0PC44 as seed ortholog is 100%.
Bootstrap support for B3L3U5 as seed ortholog is 100%.

Group of orthologs #163. Best score 351 bits
Score difference with first non-orthologous sequence - P.jiroveci:351 P.knowlesi:351

L0PGA8              	100.00%		B3L4N7              	100.00%
Bootstrap support for L0PGA8 as seed ortholog is 100%.
Bootstrap support for B3L4N7 as seed ortholog is 100%.

Group of orthologs #164. Best score 351 bits
Score difference with first non-orthologous sequence - P.jiroveci:351 P.knowlesi:351

L0PID0              	100.00%		B3L699              	100.00%
Bootstrap support for L0PID0 as seed ortholog is 100%.
Bootstrap support for B3L699 as seed ortholog is 100%.

Group of orthologs #165. Best score 350 bits
Score difference with first non-orthologous sequence - P.jiroveci:350 P.knowlesi:350

L0PDR3              	100.00%		B3L1Y4              	100.00%
Bootstrap support for L0PDR3 as seed ortholog is 100%.
Bootstrap support for B3L1Y4 as seed ortholog is 100%.

Group of orthologs #166. Best score 350 bits
Score difference with first non-orthologous sequence - P.jiroveci:350 P.knowlesi:350

L0PCN1              	100.00%		B3L6T8              	100.00%
Bootstrap support for L0PCN1 as seed ortholog is 100%.
Bootstrap support for B3L6T8 as seed ortholog is 100%.

Group of orthologs #167. Best score 348 bits
Score difference with first non-orthologous sequence - P.jiroveci:183 P.knowlesi:200

L0PC17              	100.00%		B3LC21              	100.00%
L0PD22              	48.72%		
Bootstrap support for L0PC17 as seed ortholog is 99%.
Bootstrap support for B3LC21 as seed ortholog is 100%.

Group of orthologs #168. Best score 347 bits
Score difference with first non-orthologous sequence - P.jiroveci:347 P.knowlesi:347

L0PBA8              	100.00%		B3L619              	100.00%
                    	       		B3L733              	15.45%
Bootstrap support for L0PBA8 as seed ortholog is 100%.
Bootstrap support for B3L619 as seed ortholog is 100%.

Group of orthologs #169. Best score 347 bits
Score difference with first non-orthologous sequence - P.jiroveci:347 P.knowlesi:347

L0PBF3              	100.00%		B3KZC4              	100.00%
Bootstrap support for L0PBF3 as seed ortholog is 100%.
Bootstrap support for B3KZC4 as seed ortholog is 100%.

Group of orthologs #170. Best score 344 bits
Score difference with first non-orthologous sequence - P.jiroveci:344 P.knowlesi:344

L0P6R7              	100.00%		B3LB47              	100.00%
Bootstrap support for L0P6R7 as seed ortholog is 100%.
Bootstrap support for B3LB47 as seed ortholog is 100%.

Group of orthologs #171. Best score 344 bits
Score difference with first non-orthologous sequence - P.jiroveci:244 P.knowlesi:344

L0PDG3              	100.00%		B3L623              	100.00%
Bootstrap support for L0PDG3 as seed ortholog is 99%.
Bootstrap support for B3L623 as seed ortholog is 100%.

Group of orthologs #172. Best score 343 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 P.knowlesi:343

L0PF08              	100.00%		B3KZB9              	100.00%
Bootstrap support for L0PF08 as seed ortholog is 99%.
Bootstrap support for B3KZB9 as seed ortholog is 100%.

Group of orthologs #173. Best score 340 bits
Score difference with first non-orthologous sequence - P.jiroveci:340 P.knowlesi:255

L0PI36              	100.00%		B3L2A8              	100.00%
Bootstrap support for L0PI36 as seed ortholog is 100%.
Bootstrap support for B3L2A8 as seed ortholog is 100%.

Group of orthologs #174. Best score 340 bits
Score difference with first non-orthologous sequence - P.jiroveci:179 P.knowlesi:284

L0PCD8              	100.00%		B3LCP1              	100.00%
Bootstrap support for L0PCD8 as seed ortholog is 99%.
Bootstrap support for B3LCP1 as seed ortholog is 99%.

Group of orthologs #175. Best score 339 bits
Score difference with first non-orthologous sequence - P.jiroveci:339 P.knowlesi:339

L0PFP2              	100.00%		B3L1D8              	100.00%
Bootstrap support for L0PFP2 as seed ortholog is 100%.
Bootstrap support for B3L1D8 as seed ortholog is 100%.

Group of orthologs #176. Best score 337 bits
Score difference with first non-orthologous sequence - P.jiroveci:11 P.knowlesi:154

L0PCS2              	100.00%		B3KZR4              	100.00%
Bootstrap support for L0PCS2 as seed ortholog is 77%.
Bootstrap support for B3KZR4 as seed ortholog is 98%.

Group of orthologs #177. Best score 337 bits
Score difference with first non-orthologous sequence - P.jiroveci:337 P.knowlesi:337

L0PCB2              	100.00%		B3L0S1              	100.00%
Bootstrap support for L0PCB2 as seed ortholog is 100%.
Bootstrap support for B3L0S1 as seed ortholog is 100%.

Group of orthologs #178. Best score 336 bits
Score difference with first non-orthologous sequence - P.jiroveci:336 P.knowlesi:336

L0P9J7              	100.00%		B3LAN9              	100.00%
Bootstrap support for L0P9J7 as seed ortholog is 100%.
Bootstrap support for B3LAN9 as seed ortholog is 100%.

Group of orthologs #179. Best score 334 bits
Score difference with first non-orthologous sequence - P.jiroveci:334 P.knowlesi:256

L0PAL3              	100.00%		B3L4H5              	100.00%
Bootstrap support for L0PAL3 as seed ortholog is 100%.
Bootstrap support for B3L4H5 as seed ortholog is 100%.

Group of orthologs #180. Best score 333 bits
Score difference with first non-orthologous sequence - P.jiroveci:333 P.knowlesi:333

L0PFQ8              	100.00%		B3LAT9              	100.00%
Bootstrap support for L0PFQ8 as seed ortholog is 100%.
Bootstrap support for B3LAT9 as seed ortholog is 100%.

Group of orthologs #181. Best score 331 bits
Score difference with first non-orthologous sequence - P.jiroveci:331 P.knowlesi:331

L0PC54              	100.00%		B3L1W5              	100.00%
Bootstrap support for L0PC54 as seed ortholog is 100%.
Bootstrap support for B3L1W5 as seed ortholog is 100%.

Group of orthologs #182. Best score 330 bits
Score difference with first non-orthologous sequence - P.jiroveci:265 P.knowlesi:330

L0P9U3              	100.00%		B3L691              	100.00%
Bootstrap support for L0P9U3 as seed ortholog is 100%.
Bootstrap support for B3L691 as seed ortholog is 100%.

Group of orthologs #183. Best score 330 bits
Score difference with first non-orthologous sequence - P.jiroveci:330 P.knowlesi:330

L0P8P8              	100.00%		B3LBD4              	100.00%
Bootstrap support for L0P8P8 as seed ortholog is 100%.
Bootstrap support for B3LBD4 as seed ortholog is 100%.

Group of orthologs #184. Best score 329 bits
Score difference with first non-orthologous sequence - P.jiroveci:329 P.knowlesi:329

L0P917              	100.00%		B3L2K6              	100.00%
L0PF20              	89.34%		
Bootstrap support for L0P917 as seed ortholog is 100%.
Bootstrap support for B3L2K6 as seed ortholog is 100%.

Group of orthologs #185. Best score 323 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 P.knowlesi:18

L0PHY6              	100.00%		B3L4Y8              	100.00%
Bootstrap support for L0PHY6 as seed ortholog is 99%.
Bootstrap support for B3L4Y8 as seed ortholog is 56%.
Alternative seed ortholog is B3L3M4 (18 bits away from this cluster)

Group of orthologs #186. Best score 322 bits
Score difference with first non-orthologous sequence - P.jiroveci:322 P.knowlesi:221

L0PBL6              	100.00%		B3L6H8              	100.00%
Bootstrap support for L0PBL6 as seed ortholog is 100%.
Bootstrap support for B3L6H8 as seed ortholog is 99%.

Group of orthologs #187. Best score 322 bits
Score difference with first non-orthologous sequence - P.jiroveci:322 P.knowlesi:322

L0PFY1              	100.00%		B3L781              	100.00%
Bootstrap support for L0PFY1 as seed ortholog is 100%.
Bootstrap support for B3L781 as seed ortholog is 100%.

Group of orthologs #188. Best score 321 bits
Score difference with first non-orthologous sequence - P.jiroveci:321 P.knowlesi:321

L0PA41              	100.00%		B3L9T7              	100.00%
Bootstrap support for L0PA41 as seed ortholog is 100%.
Bootstrap support for B3L9T7 as seed ortholog is 100%.

Group of orthologs #189. Best score 319 bits
Score difference with first non-orthologous sequence - P.jiroveci:182 P.knowlesi:166

L0PAU1              	100.00%		B3L070              	100.00%
Bootstrap support for L0PAU1 as seed ortholog is 99%.
Bootstrap support for B3L070 as seed ortholog is 99%.

Group of orthologs #190. Best score 315 bits
Score difference with first non-orthologous sequence - P.jiroveci:315 P.knowlesi:315

L0PFI2              	100.00%		B3KZR6              	100.00%
Bootstrap support for L0PFI2 as seed ortholog is 100%.
Bootstrap support for B3KZR6 as seed ortholog is 100%.

Group of orthologs #191. Best score 315 bits
Score difference with first non-orthologous sequence - P.jiroveci:174 P.knowlesi:315

L0PH03              	100.00%		B3L828              	100.00%
Bootstrap support for L0PH03 as seed ortholog is 100%.
Bootstrap support for B3L828 as seed ortholog is 100%.

Group of orthologs #192. Best score 312 bits
Score difference with first non-orthologous sequence - P.jiroveci:312 P.knowlesi:312

L0PEK9              	100.00%		B3LAL1              	100.00%
Bootstrap support for L0PEK9 as seed ortholog is 100%.
Bootstrap support for B3LAL1 as seed ortholog is 100%.

Group of orthologs #193. Best score 311 bits
Score difference with first non-orthologous sequence - P.jiroveci:254 P.knowlesi:260

L0PBU6              	100.00%		B3LCJ0              	100.00%
Bootstrap support for L0PBU6 as seed ortholog is 99%.
Bootstrap support for B3LCJ0 as seed ortholog is 100%.

Group of orthologs #194. Best score 311 bits
Score difference with first non-orthologous sequence - P.jiroveci:311 P.knowlesi:311

L0PBF6              	100.00%		B3LDA2              	100.00%
Bootstrap support for L0PBF6 as seed ortholog is 100%.
Bootstrap support for B3LDA2 as seed ortholog is 100%.

Group of orthologs #195. Best score 309 bits
Score difference with first non-orthologous sequence - P.jiroveci:224 P.knowlesi:309

L0PBY2              	100.00%		B3L310              	100.00%
Bootstrap support for L0PBY2 as seed ortholog is 100%.
Bootstrap support for B3L310 as seed ortholog is 100%.

Group of orthologs #196. Best score 306 bits
Score difference with first non-orthologous sequence - P.jiroveci:306 P.knowlesi:145

L0P9A8              	100.00%		B3L873              	100.00%
L0PHB9              	100.00%		
Bootstrap support for L0P9A8 as seed ortholog is 100%.
Bootstrap support for L0PHB9 as seed ortholog is 100%.
Bootstrap support for B3L873 as seed ortholog is 99%.

Group of orthologs #197. Best score 306 bits
Score difference with first non-orthologous sequence - P.jiroveci:306 P.knowlesi:306

L0PEZ3              	100.00%		B3L4Y6              	100.00%
Bootstrap support for L0PEZ3 as seed ortholog is 100%.
Bootstrap support for B3L4Y6 as seed ortholog is 100%.

Group of orthologs #198. Best score 305 bits
Score difference with first non-orthologous sequence - P.jiroveci:233 P.knowlesi:305

L0PAL8              	100.00%		B3LBF1              	100.00%
Bootstrap support for L0PAL8 as seed ortholog is 100%.
Bootstrap support for B3LBF1 as seed ortholog is 100%.

Group of orthologs #199. Best score 305 bits
Score difference with first non-orthologous sequence - P.jiroveci:305 P.knowlesi:305

L0PED9              	100.00%		B3L8R5              	100.00%
Bootstrap support for L0PED9 as seed ortholog is 100%.
Bootstrap support for B3L8R5 as seed ortholog is 100%.

Group of orthologs #200. Best score 303 bits
Score difference with first non-orthologous sequence - P.jiroveci:303 P.knowlesi:303

L0PFI9              	100.00%		B3LCC3              	100.00%
Bootstrap support for L0PFI9 as seed ortholog is 100%.
Bootstrap support for B3LCC3 as seed ortholog is 100%.

Group of orthologs #201. Best score 302 bits
Score difference with first non-orthologous sequence - P.jiroveci:302 P.knowlesi:229

L0P7L7              	100.00%		B3L7S7              	100.00%
Bootstrap support for L0P7L7 as seed ortholog is 100%.
Bootstrap support for B3L7S7 as seed ortholog is 100%.

Group of orthologs #202. Best score 300 bits
Score difference with first non-orthologous sequence - P.jiroveci:300 P.knowlesi:98

L0PE19              	100.00%		B3L1L0              	100.00%
                    	       		B3L992              	100.00%
Bootstrap support for L0PE19 as seed ortholog is 100%.
Bootstrap support for B3L1L0 as seed ortholog is 99%.
Bootstrap support for B3L992 as seed ortholog is 99%.

Group of orthologs #203. Best score 300 bits
Score difference with first non-orthologous sequence - P.jiroveci:300 P.knowlesi:300

L0PB24              	100.00%		B3LAC9              	100.00%
Bootstrap support for L0PB24 as seed ortholog is 100%.
Bootstrap support for B3LAC9 as seed ortholog is 100%.

Group of orthologs #204. Best score 299 bits
Score difference with first non-orthologous sequence - P.jiroveci:299 P.knowlesi:299

L0P861              	100.00%		B3L3U0              	100.00%
Bootstrap support for L0P861 as seed ortholog is 100%.
Bootstrap support for B3L3U0 as seed ortholog is 100%.

Group of orthologs #205. Best score 299 bits
Score difference with first non-orthologous sequence - P.jiroveci:299 P.knowlesi:299

L0PEX5              	100.00%		B3L7E4              	100.00%
Bootstrap support for L0PEX5 as seed ortholog is 100%.
Bootstrap support for B3L7E4 as seed ortholog is 100%.

Group of orthologs #206. Best score 297 bits
Score difference with first non-orthologous sequence - P.jiroveci:297 P.knowlesi:297

L0PD02              	100.00%		B3LCC4              	100.00%
Bootstrap support for L0PD02 as seed ortholog is 100%.
Bootstrap support for B3LCC4 as seed ortholog is 100%.

Group of orthologs #207. Best score 295 bits
Score difference with first non-orthologous sequence - P.jiroveci:295 P.knowlesi:295

L0PE98              	100.00%		B3L7F1              	100.00%
Bootstrap support for L0PE98 as seed ortholog is 100%.
Bootstrap support for B3L7F1 as seed ortholog is 100%.

Group of orthologs #208. Best score 293 bits
Score difference with first non-orthologous sequence - P.jiroveci:293 P.knowlesi:293

L0PG96              	100.00%		B3L4Y1              	100.00%
Bootstrap support for L0PG96 as seed ortholog is 100%.
Bootstrap support for B3L4Y1 as seed ortholog is 100%.

Group of orthologs #209. Best score 292 bits
Score difference with first non-orthologous sequence - P.jiroveci:292 P.knowlesi:161

L0PBG8              	100.00%		B3L3C9              	100.00%
Bootstrap support for L0PBG8 as seed ortholog is 100%.
Bootstrap support for B3L3C9 as seed ortholog is 99%.

Group of orthologs #210. Best score 292 bits
Score difference with first non-orthologous sequence - P.jiroveci:292 P.knowlesi:292

L0PAG0              	100.00%		B3LAL7              	100.00%
Bootstrap support for L0PAG0 as seed ortholog is 100%.
Bootstrap support for B3LAL7 as seed ortholog is 100%.

Group of orthologs #211. Best score 291 bits
Score difference with first non-orthologous sequence - P.jiroveci:291 P.knowlesi:291

L0PG82              	100.00%		B3KZJ7              	100.00%
Bootstrap support for L0PG82 as seed ortholog is 100%.
Bootstrap support for B3KZJ7 as seed ortholog is 100%.

Group of orthologs #212. Best score 291 bits
Score difference with first non-orthologous sequence - P.jiroveci:291 P.knowlesi:291

L0PGJ5              	100.00%		B3KZP9              	100.00%
Bootstrap support for L0PGJ5 as seed ortholog is 100%.
Bootstrap support for B3KZP9 as seed ortholog is 100%.

Group of orthologs #213. Best score 290 bits
Score difference with first non-orthologous sequence - P.jiroveci:173 P.knowlesi:204

L0P9F6              	100.00%		B3L2D4              	100.00%
Bootstrap support for L0P9F6 as seed ortholog is 100%.
Bootstrap support for B3L2D4 as seed ortholog is 100%.

Group of orthologs #214. Best score 289 bits
Score difference with first non-orthologous sequence - P.jiroveci:207 P.knowlesi:9

L0PA88              	100.00%		B3L2B7              	100.00%
Bootstrap support for L0PA88 as seed ortholog is 100%.
Bootstrap support for B3L2B7 as seed ortholog is 63%.
Alternative seed ortholog is B3L3I0 (9 bits away from this cluster)

Group of orthologs #215. Best score 289 bits
Score difference with first non-orthologous sequence - P.jiroveci:289 P.knowlesi:146

L0PEA7              	100.00%		B3L769              	100.00%
Bootstrap support for L0PEA7 as seed ortholog is 100%.
Bootstrap support for B3L769 as seed ortholog is 99%.

Group of orthologs #216. Best score 288 bits
Score difference with first non-orthologous sequence - P.jiroveci:288 P.knowlesi:288

L0PAS8              	100.00%		B3L212              	100.00%
Bootstrap support for L0PAS8 as seed ortholog is 100%.
Bootstrap support for B3L212 as seed ortholog is 100%.

Group of orthologs #217. Best score 284 bits
Score difference with first non-orthologous sequence - P.jiroveci:284 P.knowlesi:284

L0PBN1              	100.00%		B3L108              	100.00%
Bootstrap support for L0PBN1 as seed ortholog is 100%.
Bootstrap support for B3L108 as seed ortholog is 100%.

Group of orthologs #218. Best score 284 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:100

L0PBP2              	100.00%		B3LDF3              	100.00%
Bootstrap support for L0PBP2 as seed ortholog is 99%.
Bootstrap support for B3LDF3 as seed ortholog is 99%.

Group of orthologs #219. Best score 283 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:283

L0PC30              	100.00%		B3L0N7              	100.00%
                    	       		B3L6H3              	5.62%
Bootstrap support for L0PC30 as seed ortholog is 95%.
Bootstrap support for B3L0N7 as seed ortholog is 100%.

Group of orthologs #220. Best score 281 bits
Score difference with first non-orthologous sequence - P.jiroveci:48 P.knowlesi:108

L0PA26              	100.00%		B3L1K2              	100.00%
Bootstrap support for L0PA26 as seed ortholog is 88%.
Bootstrap support for B3L1K2 as seed ortholog is 99%.

Group of orthologs #221. Best score 279 bits
Score difference with first non-orthologous sequence - P.jiroveci:279 P.knowlesi:174

L0P8G2              	100.00%		B3L7N3              	100.00%
Bootstrap support for L0P8G2 as seed ortholog is 100%.
Bootstrap support for B3L7N3 as seed ortholog is 99%.

Group of orthologs #222. Best score 279 bits
Score difference with first non-orthologous sequence - P.jiroveci:212 P.knowlesi:210

L0PEF5              	100.00%		B3L4Y0              	100.00%
Bootstrap support for L0PEF5 as seed ortholog is 100%.
Bootstrap support for B3L4Y0 as seed ortholog is 100%.

Group of orthologs #223. Best score 278 bits
Score difference with first non-orthologous sequence - P.jiroveci:278 P.knowlesi:278

L0PD03              	100.00%		B3L0Z7              	100.00%
Bootstrap support for L0PD03 as seed ortholog is 100%.
Bootstrap support for B3L0Z7 as seed ortholog is 100%.

Group of orthologs #224. Best score 277 bits
Score difference with first non-orthologous sequence - P.jiroveci:277 P.knowlesi:161

L0PE52              	100.00%		B3L0G0              	100.00%
L0PIN5              	52.81%		
Bootstrap support for L0PE52 as seed ortholog is 100%.
Bootstrap support for B3L0G0 as seed ortholog is 99%.

Group of orthologs #225. Best score 277 bits
Score difference with first non-orthologous sequence - P.jiroveci:277 P.knowlesi:277

L0PC62              	100.00%		B3L5A0              	100.00%
Bootstrap support for L0PC62 as seed ortholog is 100%.
Bootstrap support for B3L5A0 as seed ortholog is 100%.

Group of orthologs #226. Best score 276 bits
Score difference with first non-orthologous sequence - P.jiroveci:276 P.knowlesi:276

L0P921              	100.00%		B3L5A2              	100.00%
Bootstrap support for L0P921 as seed ortholog is 100%.
Bootstrap support for B3L5A2 as seed ortholog is 100%.

Group of orthologs #227. Best score 276 bits
Score difference with first non-orthologous sequence - P.jiroveci:276 P.knowlesi:192

L0PDW0              	100.00%		B3LAM7              	100.00%
Bootstrap support for L0PDW0 as seed ortholog is 100%.
Bootstrap support for B3LAM7 as seed ortholog is 99%.

Group of orthologs #228. Best score 275 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 P.knowlesi:136

L0PGR0              	100.00%		B3L611              	100.00%
                    	       		B3LCZ9              	5.02%
Bootstrap support for L0PGR0 as seed ortholog is 99%.
Bootstrap support for B3L611 as seed ortholog is 99%.

Group of orthologs #229. Best score 275 bits
Score difference with first non-orthologous sequence - P.jiroveci:275 P.knowlesi:275

L0PDF2              	100.00%		B3L430              	100.00%
Bootstrap support for L0PDF2 as seed ortholog is 100%.
Bootstrap support for B3L430 as seed ortholog is 100%.

Group of orthologs #230. Best score 274 bits
Score difference with first non-orthologous sequence - P.jiroveci:274 P.knowlesi:274

L0PD69              	100.00%		B3L7G3              	100.00%
Bootstrap support for L0PD69 as seed ortholog is 100%.
Bootstrap support for B3L7G3 as seed ortholog is 100%.

Group of orthologs #231. Best score 274 bits
Score difference with first non-orthologous sequence - P.jiroveci:220 P.knowlesi:215

L0PD17              	100.00%		B3L8A8              	100.00%
Bootstrap support for L0PD17 as seed ortholog is 100%.
Bootstrap support for B3L8A8 as seed ortholog is 100%.

Group of orthologs #232. Best score 274 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:104

L0PGJ9              	100.00%		B3LBB4              	100.00%
Bootstrap support for L0PGJ9 as seed ortholog is 95%.
Bootstrap support for B3LBB4 as seed ortholog is 99%.

Group of orthologs #233. Best score 271 bits
Score difference with first non-orthologous sequence - P.jiroveci:271 P.knowlesi:271

L0PF68              	100.00%		B3L2T6              	100.00%
Bootstrap support for L0PF68 as seed ortholog is 100%.
Bootstrap support for B3L2T6 as seed ortholog is 100%.

Group of orthologs #234. Best score 271 bits
Score difference with first non-orthologous sequence - P.jiroveci:271 P.knowlesi:271

L0PA42              	100.00%		B3LAE0              	100.00%
Bootstrap support for L0PA42 as seed ortholog is 100%.
Bootstrap support for B3LAE0 as seed ortholog is 100%.

Group of orthologs #235. Best score 270 bits
Score difference with first non-orthologous sequence - P.jiroveci:270 P.knowlesi:270

L0PAF9              	100.00%		B3LA03              	100.00%
Bootstrap support for L0PAF9 as seed ortholog is 100%.
Bootstrap support for B3LA03 as seed ortholog is 100%.

Group of orthologs #236. Best score 269 bits
Score difference with first non-orthologous sequence - P.jiroveci:269 P.knowlesi:269

L0PFI8              	100.00%		B3L0A6              	100.00%
Bootstrap support for L0PFI8 as seed ortholog is 100%.
Bootstrap support for B3L0A6 as seed ortholog is 100%.

Group of orthologs #237. Best score 269 bits
Score difference with first non-orthologous sequence - P.jiroveci:269 P.knowlesi:269

L0P9X4              	100.00%		B3L9A1              	100.00%
Bootstrap support for L0P9X4 as seed ortholog is 100%.
Bootstrap support for B3L9A1 as seed ortholog is 100%.

Group of orthologs #238. Best score 268 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 P.knowlesi:268

L0PCJ5              	100.00%		B3L228              	100.00%
Bootstrap support for L0PCJ5 as seed ortholog is 99%.
Bootstrap support for B3L228 as seed ortholog is 100%.

Group of orthologs #239. Best score 268 bits
Score difference with first non-orthologous sequence - P.jiroveci:268 P.knowlesi:268

L0PAJ2              	100.00%		B3L640              	100.00%
Bootstrap support for L0PAJ2 as seed ortholog is 100%.
Bootstrap support for B3L640 as seed ortholog is 100%.

Group of orthologs #240. Best score 267 bits
Score difference with first non-orthologous sequence - P.jiroveci:267 P.knowlesi:267

L0PFC2              	100.00%		B3L4Q7              	100.00%
Bootstrap support for L0PFC2 as seed ortholog is 100%.
Bootstrap support for B3L4Q7 as seed ortholog is 100%.

Group of orthologs #241. Best score 263 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 P.knowlesi:2

L0P8E8              	100.00%		B3L436              	100.00%
L0PEB0              	100.00%		
Bootstrap support for L0P8E8 as seed ortholog is 99%.
Bootstrap support for L0PEB0 as seed ortholog is 99%.
Bootstrap support for B3L436 as seed ortholog is 93%.

Group of orthologs #242. Best score 263 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 P.knowlesi:150

L0P8I7              	100.00%		B3L342              	100.00%
Bootstrap support for L0P8I7 as seed ortholog is 100%.
Bootstrap support for B3L342 as seed ortholog is 100%.

Group of orthologs #243. Best score 262 bits
Score difference with first non-orthologous sequence - P.jiroveci:262 P.knowlesi:262

L0PCG4              	100.00%		B3L4K6              	100.00%
Bootstrap support for L0PCG4 as seed ortholog is 100%.
Bootstrap support for B3L4K6 as seed ortholog is 100%.

Group of orthologs #244. Best score 262 bits
Score difference with first non-orthologous sequence - P.jiroveci:262 P.knowlesi:262

L0PDM3              	100.00%		B3L9E8              	100.00%
Bootstrap support for L0PDM3 as seed ortholog is 100%.
Bootstrap support for B3L9E8 as seed ortholog is 100%.

Group of orthologs #245. Best score 262 bits
Score difference with first non-orthologous sequence - P.jiroveci:262 P.knowlesi:40

L0PE41              	100.00%		B3L8Z0              	100.00%
Bootstrap support for L0PE41 as seed ortholog is 100%.
Bootstrap support for B3L8Z0 as seed ortholog is 68%.
Alternative seed ortholog is B3LAT1 (40 bits away from this cluster)

Group of orthologs #246. Best score 260 bits
Score difference with first non-orthologous sequence - P.jiroveci:260 P.knowlesi:64

L0P891              	100.00%		B3L9C8              	100.00%
Bootstrap support for L0P891 as seed ortholog is 100%.
Bootstrap support for B3L9C8 as seed ortholog is 95%.

Group of orthologs #247. Best score 260 bits
Score difference with first non-orthologous sequence - P.jiroveci:260 P.knowlesi:260

L0PGN1              	100.00%		B3L1X3              	100.00%
Bootstrap support for L0PGN1 as seed ortholog is 100%.
Bootstrap support for B3L1X3 as seed ortholog is 100%.

Group of orthologs #248. Best score 260 bits
Score difference with first non-orthologous sequence - P.jiroveci:260 P.knowlesi:260

L0PF98              	100.00%		B3L5C6              	100.00%
Bootstrap support for L0PF98 as seed ortholog is 100%.
Bootstrap support for B3L5C6 as seed ortholog is 100%.

Group of orthologs #249. Best score 258 bits
Score difference with first non-orthologous sequence - P.jiroveci:258 P.knowlesi:258

L0P9I4              	100.00%		B3L4N0              	100.00%
Bootstrap support for L0P9I4 as seed ortholog is 100%.
Bootstrap support for B3L4N0 as seed ortholog is 100%.

Group of orthologs #250. Best score 258 bits
Score difference with first non-orthologous sequence - P.jiroveci:258 P.knowlesi:258

L0PC90              	100.00%		B3L6H1              	100.00%
Bootstrap support for L0PC90 as seed ortholog is 100%.
Bootstrap support for B3L6H1 as seed ortholog is 100%.

Group of orthologs #251. Best score 258 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.knowlesi:1

L0PAY5              	100.00%		B3L8Q6              	100.00%
Bootstrap support for L0PAY5 as seed ortholog is 98%.
Bootstrap support for B3L8Q6 as seed ortholog is 49%.
Alternative seed ortholog is B3L0G9 (1 bits away from this cluster)

Group of orthologs #252. Best score 255 bits
Score difference with first non-orthologous sequence - P.jiroveci:255 P.knowlesi:193

L0PDV0              	100.00%		B3L0I9              	100.00%
Bootstrap support for L0PDV0 as seed ortholog is 100%.
Bootstrap support for B3L0I9 as seed ortholog is 99%.

Group of orthologs #253. Best score 255 bits
Score difference with first non-orthologous sequence - P.jiroveci:255 P.knowlesi:255

L0PBQ9              	100.00%		B3LB03              	100.00%
Bootstrap support for L0PBQ9 as seed ortholog is 100%.
Bootstrap support for B3LB03 as seed ortholog is 100%.

Group of orthologs #254. Best score 255 bits
Score difference with first non-orthologous sequence - P.jiroveci:255 P.knowlesi:255

L0PF23              	100.00%		B3L9M5              	100.00%
Bootstrap support for L0PF23 as seed ortholog is 100%.
Bootstrap support for B3L9M5 as seed ortholog is 100%.

Group of orthologs #255. Best score 253 bits
Score difference with first non-orthologous sequence - P.jiroveci:90 P.knowlesi:69

L0PBI1              	100.00%		B3KZ33              	100.00%
Bootstrap support for L0PBI1 as seed ortholog is 99%.
Bootstrap support for B3KZ33 as seed ortholog is 93%.

Group of orthologs #256. Best score 253 bits
Score difference with first non-orthologous sequence - P.jiroveci:253 P.knowlesi:253

L0P8G8              	100.00%		B3LAK2              	100.00%
Bootstrap support for L0P8G8 as seed ortholog is 100%.
Bootstrap support for B3LAK2 as seed ortholog is 100%.

Group of orthologs #257. Best score 252 bits
Score difference with first non-orthologous sequence - P.jiroveci:252 P.knowlesi:252

L0P8V0              	100.00%		B3L2G8              	100.00%
Bootstrap support for L0P8V0 as seed ortholog is 100%.
Bootstrap support for B3L2G8 as seed ortholog is 100%.

Group of orthologs #258. Best score 252 bits
Score difference with first non-orthologous sequence - P.jiroveci:252 P.knowlesi:158

L0PG24              	100.00%		B3L681              	100.00%
Bootstrap support for L0PG24 as seed ortholog is 100%.
Bootstrap support for B3L681 as seed ortholog is 99%.

Group of orthologs #259. Best score 251 bits
Score difference with first non-orthologous sequence - P.jiroveci:251 P.knowlesi:251

L0P8N3              	100.00%		B3L8L1              	100.00%
Bootstrap support for L0P8N3 as seed ortholog is 100%.
Bootstrap support for B3L8L1 as seed ortholog is 100%.

Group of orthologs #260. Best score 250 bits
Score difference with first non-orthologous sequence - P.jiroveci:250 P.knowlesi:250

L0PB54              	100.00%		B3LAR7              	100.00%
Bootstrap support for L0PB54 as seed ortholog is 100%.
Bootstrap support for B3LAR7 as seed ortholog is 100%.

Group of orthologs #261. Best score 249 bits
Score difference with first non-orthologous sequence - P.jiroveci:249 P.knowlesi:249

L0PF30              	100.00%		B3L7H2              	100.00%
Bootstrap support for L0PF30 as seed ortholog is 100%.
Bootstrap support for B3L7H2 as seed ortholog is 100%.

Group of orthologs #262. Best score 249 bits
Score difference with first non-orthologous sequence - P.jiroveci:37 P.knowlesi:249

L0PIP5              	100.00%		B3L6L5              	100.00%
Bootstrap support for L0PIP5 as seed ortholog is 89%.
Bootstrap support for B3L6L5 as seed ortholog is 100%.

Group of orthologs #263. Best score 248 bits
Score difference with first non-orthologous sequence - P.jiroveci:125 P.knowlesi:248

L0PD82              	100.00%		B3LAG9              	100.00%
L0P6Q8              	22.86%		
Bootstrap support for L0PD82 as seed ortholog is 99%.
Bootstrap support for B3LAG9 as seed ortholog is 100%.

Group of orthologs #264. Best score 248 bits
Score difference with first non-orthologous sequence - P.jiroveci:248 P.knowlesi:248

L0PFM4              	100.00%		B3L6T1              	100.00%
Bootstrap support for L0PFM4 as seed ortholog is 100%.
Bootstrap support for B3L6T1 as seed ortholog is 100%.

Group of orthologs #265. Best score 247 bits
Score difference with first non-orthologous sequence - P.jiroveci:247 P.knowlesi:247

L0PCK3              	100.00%		B3L4L2              	100.00%
                    	       		B3LCB2              	29.67%
Bootstrap support for L0PCK3 as seed ortholog is 100%.
Bootstrap support for B3L4L2 as seed ortholog is 100%.

Group of orthologs #266. Best score 246 bits
Score difference with first non-orthologous sequence - P.jiroveci:246 P.knowlesi:246

L0PDV1              	100.00%		B3L752              	100.00%
Bootstrap support for L0PDV1 as seed ortholog is 100%.
Bootstrap support for B3L752 as seed ortholog is 100%.

Group of orthologs #267. Best score 246 bits
Score difference with first non-orthologous sequence - P.jiroveci:246 P.knowlesi:246

L0PCH8              	100.00%		B3L9P8              	100.00%
Bootstrap support for L0PCH8 as seed ortholog is 100%.
Bootstrap support for B3L9P8 as seed ortholog is 100%.

Group of orthologs #268. Best score 246 bits
Score difference with first non-orthologous sequence - P.jiroveci:246 P.knowlesi:246

L0PED5              	100.00%		B3LA31              	100.00%
Bootstrap support for L0PED5 as seed ortholog is 100%.
Bootstrap support for B3LA31 as seed ortholog is 100%.

Group of orthologs #269. Best score 245 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 P.knowlesi:245

L0P6T3              	100.00%		B3L0V6              	100.00%
L0PF21              	18.31%		
Bootstrap support for L0P6T3 as seed ortholog is 100%.
Bootstrap support for B3L0V6 as seed ortholog is 100%.

Group of orthologs #270. Best score 245 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 P.knowlesi:245

L0PA93              	100.00%		B3L714              	100.00%
Bootstrap support for L0PA93 as seed ortholog is 100%.
Bootstrap support for B3L714 as seed ortholog is 100%.

Group of orthologs #271. Best score 245 bits
Score difference with first non-orthologous sequence - P.jiroveci:245 P.knowlesi:245

L0PHL5              	100.00%		B3L7H9              	100.00%
Bootstrap support for L0PHL5 as seed ortholog is 100%.
Bootstrap support for B3L7H9 as seed ortholog is 100%.

Group of orthologs #272. Best score 243 bits
Score difference with first non-orthologous sequence - P.jiroveci:142 P.knowlesi:62

L0P6V9              	100.00%		B3L8Y4              	100.00%
L0PBF0              	8.59%		
Bootstrap support for L0P6V9 as seed ortholog is 100%.
Bootstrap support for B3L8Y4 as seed ortholog is 97%.

Group of orthologs #273. Best score 243 bits
Score difference with first non-orthologous sequence - P.jiroveci:243 P.knowlesi:243

L0PG22              	100.00%		B3L3M9              	100.00%
L0PB04              	75.00%		
Bootstrap support for L0PG22 as seed ortholog is 100%.
Bootstrap support for B3L3M9 as seed ortholog is 100%.

Group of orthologs #274. Best score 243 bits
Score difference with first non-orthologous sequence - P.jiroveci:243 P.knowlesi:243

L0PHG7              	100.00%		B3L5A9              	100.00%
Bootstrap support for L0PHG7 as seed ortholog is 100%.
Bootstrap support for B3L5A9 as seed ortholog is 100%.

Group of orthologs #275. Best score 242 bits
Score difference with first non-orthologous sequence - P.jiroveci:242 P.knowlesi:242

L0P8X1              	100.00%		B3L9S4              	100.00%
Bootstrap support for L0P8X1 as seed ortholog is 100%.
Bootstrap support for B3L9S4 as seed ortholog is 100%.

Group of orthologs #276. Best score 241 bits
Score difference with first non-orthologous sequence - P.jiroveci:241 P.knowlesi:178

L0P9S5              	100.00%		B3L1B8              	100.00%
Bootstrap support for L0P9S5 as seed ortholog is 100%.
Bootstrap support for B3L1B8 as seed ortholog is 100%.

Group of orthologs #277. Best score 240 bits
Score difference with first non-orthologous sequence - P.jiroveci:240 P.knowlesi:240

L0PAM2              	100.00%		B3L086              	100.00%
Bootstrap support for L0PAM2 as seed ortholog is 100%.
Bootstrap support for B3L086 as seed ortholog is 100%.

Group of orthologs #278. Best score 240 bits
Score difference with first non-orthologous sequence - P.jiroveci:8 P.knowlesi:69

L0PC59              	100.00%		B3L1W8              	100.00%
Bootstrap support for L0PC59 as seed ortholog is 62%.
Alternative seed ortholog is L0P9E4 (8 bits away from this cluster)
Bootstrap support for B3L1W8 as seed ortholog is 99%.

Group of orthologs #279. Best score 240 bits
Score difference with first non-orthologous sequence - P.jiroveci:240 P.knowlesi:240

L0PIR9              	100.00%		B3L268              	100.00%
Bootstrap support for L0PIR9 as seed ortholog is 100%.
Bootstrap support for B3L268 as seed ortholog is 100%.

Group of orthologs #280. Best score 240 bits
Score difference with first non-orthologous sequence - P.jiroveci:240 P.knowlesi:240

L0PBC5              	100.00%		B3L9B3              	100.00%
Bootstrap support for L0PBC5 as seed ortholog is 100%.
Bootstrap support for B3L9B3 as seed ortholog is 100%.

Group of orthologs #281. Best score 240 bits
Score difference with first non-orthologous sequence - P.jiroveci:240 P.knowlesi:240

L0PAE9              	100.00%		B3LD49              	100.00%
Bootstrap support for L0PAE9 as seed ortholog is 100%.
Bootstrap support for B3LD49 as seed ortholog is 100%.

Group of orthologs #282. Best score 238 bits
Score difference with first non-orthologous sequence - P.jiroveci:238 P.knowlesi:238

L0P9P0              	100.00%		B3L0B3              	100.00%
Bootstrap support for L0P9P0 as seed ortholog is 100%.
Bootstrap support for B3L0B3 as seed ortholog is 100%.

Group of orthologs #283. Best score 237 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 P.knowlesi:237

L0PD68              	100.00%		B3L5M0              	100.00%
Bootstrap support for L0PD68 as seed ortholog is 100%.
Bootstrap support for B3L5M0 as seed ortholog is 100%.

Group of orthologs #284. Best score 237 bits
Score difference with first non-orthologous sequence - P.jiroveci:237 P.knowlesi:237

L0PFU1              	100.00%		B3L787              	100.00%
Bootstrap support for L0PFU1 as seed ortholog is 100%.
Bootstrap support for B3L787 as seed ortholog is 100%.

Group of orthologs #285. Best score 235 bits
Score difference with first non-orthologous sequence - P.jiroveci:235 P.knowlesi:235

L0PAN7              	100.00%		B3LAY5              	100.00%
Bootstrap support for L0PAN7 as seed ortholog is 100%.
Bootstrap support for B3LAY5 as seed ortholog is 100%.

Group of orthologs #286. Best score 235 bits
Score difference with first non-orthologous sequence - P.jiroveci:235 P.knowlesi:235

L0PEV9              	100.00%		B3L8Q5              	100.00%
Bootstrap support for L0PEV9 as seed ortholog is 100%.
Bootstrap support for B3L8Q5 as seed ortholog is 100%.

Group of orthologs #287. Best score 234 bits
Score difference with first non-orthologous sequence - P.jiroveci:234 P.knowlesi:234

L0PD18              	100.00%		B3LCV0              	100.00%
Bootstrap support for L0PD18 as seed ortholog is 100%.
Bootstrap support for B3LCV0 as seed ortholog is 100%.

Group of orthologs #288. Best score 233 bits
Score difference with first non-orthologous sequence - P.jiroveci:164 P.knowlesi:157

L0PET2              	100.00%		B3L8V3              	100.00%
L0PAE5              	85.67%		
Bootstrap support for L0PET2 as seed ortholog is 100%.
Bootstrap support for B3L8V3 as seed ortholog is 100%.

Group of orthologs #289. Best score 233 bits
Score difference with first non-orthologous sequence - P.jiroveci:127 P.knowlesi:108

L0P876              	100.00%		B3LB25              	100.00%
Bootstrap support for L0P876 as seed ortholog is 99%.
Bootstrap support for B3LB25 as seed ortholog is 99%.

Group of orthologs #290. Best score 232 bits
Score difference with first non-orthologous sequence - P.jiroveci:232 P.knowlesi:232

L0P7R5              	100.00%		B3L826              	100.00%
Bootstrap support for L0P7R5 as seed ortholog is 100%.
Bootstrap support for B3L826 as seed ortholog is 100%.

Group of orthologs #291. Best score 232 bits
Score difference with first non-orthologous sequence - P.jiroveci:232 P.knowlesi:232

L0PB03              	100.00%		B3L786              	100.00%
Bootstrap support for L0PB03 as seed ortholog is 100%.
Bootstrap support for B3L786 as seed ortholog is 100%.

Group of orthologs #292. Best score 231 bits
Score difference with first non-orthologous sequence - P.jiroveci:185 P.knowlesi:135

L0PFY2              	100.00%		B3L2K3              	100.00%
Bootstrap support for L0PFY2 as seed ortholog is 100%.
Bootstrap support for B3L2K3 as seed ortholog is 99%.

Group of orthologs #293. Best score 231 bits
Score difference with first non-orthologous sequence - P.jiroveci:231 P.knowlesi:231

L0PGV8              	100.00%		B3L6V4              	100.00%
Bootstrap support for L0PGV8 as seed ortholog is 100%.
Bootstrap support for B3L6V4 as seed ortholog is 100%.

Group of orthologs #294. Best score 230 bits
Score difference with first non-orthologous sequence - P.jiroveci:230 P.knowlesi:230

L0PBQ1              	100.00%		B3L1T8              	100.00%
Bootstrap support for L0PBQ1 as seed ortholog is 100%.
Bootstrap support for B3L1T8 as seed ortholog is 100%.

Group of orthologs #295. Best score 230 bits
Score difference with first non-orthologous sequence - P.jiroveci:230 P.knowlesi:230

L0PFS8              	100.00%		B3KZR0              	100.00%
Bootstrap support for L0PFS8 as seed ortholog is 100%.
Bootstrap support for B3KZR0 as seed ortholog is 100%.

Group of orthologs #296. Best score 228 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 P.knowlesi:145

L0P6U6              	100.00%		B3L520              	100.00%
Bootstrap support for L0P6U6 as seed ortholog is 73%.
Alternative seed ortholog is L0PDF8 (49 bits away from this cluster)
Bootstrap support for B3L520 as seed ortholog is 99%.

Group of orthologs #297. Best score 228 bits
Score difference with first non-orthologous sequence - P.jiroveci:228 P.knowlesi:228

L0PDL9              	100.00%		B3L3E0              	100.00%
Bootstrap support for L0PDL9 as seed ortholog is 100%.
Bootstrap support for B3L3E0 as seed ortholog is 100%.

Group of orthologs #298. Best score 227 bits
Score difference with first non-orthologous sequence - P.jiroveci:147 P.knowlesi:227

L0PB10              	100.00%		B3L2J5              	100.00%
Bootstrap support for L0PB10 as seed ortholog is 99%.
Bootstrap support for B3L2J5 as seed ortholog is 100%.

Group of orthologs #299. Best score 226 bits
Score difference with first non-orthologous sequence - P.jiroveci:226 P.knowlesi:226

L0PAC7              	100.00%		B3L739              	100.00%
Bootstrap support for L0PAC7 as seed ortholog is 100%.
Bootstrap support for B3L739 as seed ortholog is 100%.

Group of orthologs #300. Best score 226 bits
Score difference with first non-orthologous sequence - P.jiroveci:226 P.knowlesi:226

L0PI19              	100.00%		B3L928              	100.00%
Bootstrap support for L0PI19 as seed ortholog is 100%.
Bootstrap support for B3L928 as seed ortholog is 100%.

Group of orthologs #301. Best score 225 bits
Score difference with first non-orthologous sequence - P.jiroveci:225 P.knowlesi:225

L0PDA9              	100.00%		B3L0B9              	100.00%
Bootstrap support for L0PDA9 as seed ortholog is 100%.
Bootstrap support for B3L0B9 as seed ortholog is 100%.

Group of orthologs #302. Best score 224 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 P.knowlesi:150

L0P8C2              	100.00%		B3L5R4              	100.00%
Bootstrap support for L0P8C2 as seed ortholog is 98%.
Bootstrap support for B3L5R4 as seed ortholog is 99%.

Group of orthologs #303. Best score 224 bits
Score difference with first non-orthologous sequence - P.jiroveci:224 P.knowlesi:224

L0PFZ0              	100.00%		B3L7E0              	100.00%
Bootstrap support for L0PFZ0 as seed ortholog is 100%.
Bootstrap support for B3L7E0 as seed ortholog is 100%.

Group of orthologs #304. Best score 222 bits
Score difference with first non-orthologous sequence - P.jiroveci:222 P.knowlesi:222

L0PHL1              	100.00%		B3L4C7              	100.00%
Bootstrap support for L0PHL1 as seed ortholog is 100%.
Bootstrap support for B3L4C7 as seed ortholog is 100%.

Group of orthologs #305. Best score 219 bits
Score difference with first non-orthologous sequence - P.jiroveci:219 P.knowlesi:24

L0P7Z6              	100.00%		B3L067              	100.00%
Bootstrap support for L0P7Z6 as seed ortholog is 100%.
Bootstrap support for B3L067 as seed ortholog is 70%.
Alternative seed ortholog is B3LD63 (24 bits away from this cluster)

Group of orthologs #306. Best score 218 bits
Score difference with first non-orthologous sequence - P.jiroveci:218 P.knowlesi:218

L0PBT8              	100.00%		B3KZD2              	100.00%
Bootstrap support for L0PBT8 as seed ortholog is 100%.
Bootstrap support for B3KZD2 as seed ortholog is 100%.

Group of orthologs #307. Best score 216 bits
Score difference with first non-orthologous sequence - P.jiroveci:216 P.knowlesi:216

L0PBE9              	100.00%		B3L0G6              	100.00%
Bootstrap support for L0PBE9 as seed ortholog is 100%.
Bootstrap support for B3L0G6 as seed ortholog is 100%.

Group of orthologs #308. Best score 216 bits
Score difference with first non-orthologous sequence - P.jiroveci:216 P.knowlesi:99

L0PF73              	100.00%		B3LA18              	100.00%
Bootstrap support for L0PF73 as seed ortholog is 100%.
Bootstrap support for B3LA18 as seed ortholog is 99%.

Group of orthologs #309. Best score 215 bits
Score difference with first non-orthologous sequence - P.jiroveci:215 P.knowlesi:215

L0P7H2              	100.00%		B3L1H7              	100.00%
Bootstrap support for L0P7H2 as seed ortholog is 100%.
Bootstrap support for B3L1H7 as seed ortholog is 100%.

Group of orthologs #310. Best score 215 bits
Score difference with first non-orthologous sequence - P.jiroveci:215 P.knowlesi:150

L0PCG0              	100.00%		B3L4C5              	100.00%
Bootstrap support for L0PCG0 as seed ortholog is 100%.
Bootstrap support for B3L4C5 as seed ortholog is 100%.

Group of orthologs #311. Best score 215 bits
Score difference with first non-orthologous sequence - P.jiroveci:113 P.knowlesi:87

L0PGP6              	100.00%		B3L5Q4              	100.00%
Bootstrap support for L0PGP6 as seed ortholog is 100%.
Bootstrap support for B3L5Q4 as seed ortholog is 99%.

Group of orthologs #312. Best score 214 bits
Score difference with first non-orthologous sequence - P.jiroveci:214 P.knowlesi:214

L0P9T2              	100.00%		B3L1T3              	100.00%
Bootstrap support for L0P9T2 as seed ortholog is 100%.
Bootstrap support for B3L1T3 as seed ortholog is 100%.

Group of orthologs #313. Best score 214 bits
Score difference with first non-orthologous sequence - P.jiroveci:214 P.knowlesi:214

L0PF46              	100.00%		B3L2R4              	100.00%
Bootstrap support for L0PF46 as seed ortholog is 100%.
Bootstrap support for B3L2R4 as seed ortholog is 100%.

Group of orthologs #314. Best score 213 bits
Score difference with first non-orthologous sequence - P.jiroveci:213 P.knowlesi:213

L0P9R9              	100.00%		B3LA93              	100.00%
Bootstrap support for L0P9R9 as seed ortholog is 100%.
Bootstrap support for B3LA93 as seed ortholog is 100%.

Group of orthologs #315. Best score 213 bits
Score difference with first non-orthologous sequence - P.jiroveci:213 P.knowlesi:213

L0P6P2              	100.00%		B3LDE8              	100.00%
Bootstrap support for L0P6P2 as seed ortholog is 100%.
Bootstrap support for B3LDE8 as seed ortholog is 100%.

Group of orthologs #316. Best score 212 bits
Score difference with first non-orthologous sequence - P.jiroveci:5 P.knowlesi:41

L0P9Z0              	100.00%		B3L4U0              	100.00%
Bootstrap support for L0P9Z0 as seed ortholog is 44%.
Alternative seed ortholog is L0PG05 (5 bits away from this cluster)
Bootstrap support for B3L4U0 as seed ortholog is 83%.

Group of orthologs #317. Best score 212 bits
Score difference with first non-orthologous sequence - P.jiroveci:212 P.knowlesi:212

L0PFC9              	100.00%		B3L593              	100.00%
Bootstrap support for L0PFC9 as seed ortholog is 100%.
Bootstrap support for B3L593 as seed ortholog is 100%.

Group of orthologs #318. Best score 212 bits
Score difference with first non-orthologous sequence - P.jiroveci:212 P.knowlesi:212

L0PDI7              	100.00%		B3L7K8              	100.00%
Bootstrap support for L0PDI7 as seed ortholog is 100%.
Bootstrap support for B3L7K8 as seed ortholog is 100%.

Group of orthologs #319. Best score 212 bits
Score difference with first non-orthologous sequence - P.jiroveci:212 P.knowlesi:212

L0PHK5              	100.00%		B3LB97              	100.00%
Bootstrap support for L0PHK5 as seed ortholog is 100%.
Bootstrap support for B3LB97 as seed ortholog is 100%.

Group of orthologs #320. Best score 211 bits
Score difference with first non-orthologous sequence - P.jiroveci:85 P.knowlesi:142

L0PFY7              	100.00%		B3L122              	100.00%
Bootstrap support for L0PFY7 as seed ortholog is 99%.
Bootstrap support for B3L122 as seed ortholog is 100%.

Group of orthologs #321. Best score 210 bits
Score difference with first non-orthologous sequence - P.jiroveci:210 P.knowlesi:125

L0PGD7              	100.00%		B3L789              	100.00%
L0PGQ0              	65.78%		
Bootstrap support for L0PGD7 as seed ortholog is 100%.
Bootstrap support for B3L789 as seed ortholog is 99%.

Group of orthologs #322. Best score 210 bits
Score difference with first non-orthologous sequence - P.jiroveci:210 P.knowlesi:147

L0PIJ3              	100.00%		B3L918              	100.00%
L0PEP1              	83.79%		
Bootstrap support for L0PIJ3 as seed ortholog is 100%.
Bootstrap support for B3L918 as seed ortholog is 99%.

Group of orthologs #323. Best score 210 bits
Score difference with first non-orthologous sequence - P.jiroveci:210 P.knowlesi:210

L0PE58              	100.00%		B3L567              	100.00%
Bootstrap support for L0PE58 as seed ortholog is 100%.
Bootstrap support for B3L567 as seed ortholog is 100%.

Group of orthologs #324. Best score 209 bits
Score difference with first non-orthologous sequence - P.jiroveci:209 P.knowlesi:209

L0PCR8              	100.00%		B3L984              	100.00%
L0PH75              	91.54%		
Bootstrap support for L0PCR8 as seed ortholog is 100%.
Bootstrap support for B3L984 as seed ortholog is 100%.

Group of orthologs #325. Best score 209 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:125

L0P9F9              	100.00%		B3L2G9              	100.00%
Bootstrap support for L0P9F9 as seed ortholog is 100%.
Bootstrap support for B3L2G9 as seed ortholog is 100%.

Group of orthologs #326. Best score 208 bits
Score difference with first non-orthologous sequence - P.jiroveci:208 P.knowlesi:208

L0PBZ7              	100.00%		B3L2C8              	100.00%
Bootstrap support for L0PBZ7 as seed ortholog is 100%.
Bootstrap support for B3L2C8 as seed ortholog is 100%.

Group of orthologs #327. Best score 208 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:78

L0PG51              	100.00%		B3L024              	100.00%
Bootstrap support for L0PG51 as seed ortholog is 99%.
Bootstrap support for B3L024 as seed ortholog is 99%.

Group of orthologs #328. Best score 208 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 P.knowlesi:208

L0PCV1              	100.00%		B3LAS6              	100.00%
Bootstrap support for L0PCV1 as seed ortholog is 96%.
Bootstrap support for B3LAS6 as seed ortholog is 100%.

Group of orthologs #329. Best score 207 bits
Score difference with first non-orthologous sequence - P.jiroveci:207 P.knowlesi:207

L0P8T4              	100.00%		B3L5K2              	100.00%
Bootstrap support for L0P8T4 as seed ortholog is 100%.
Bootstrap support for B3L5K2 as seed ortholog is 100%.

Group of orthologs #330. Best score 206 bits
Score difference with first non-orthologous sequence - P.jiroveci:206 P.knowlesi:206

L0PB28              	100.00%		B3L1G8              	100.00%
Bootstrap support for L0PB28 as seed ortholog is 100%.
Bootstrap support for B3L1G8 as seed ortholog is 100%.

Group of orthologs #331. Best score 205 bits
Score difference with first non-orthologous sequence - P.jiroveci:205 P.knowlesi:205

L0PDI1              	100.00%		B3L4S8              	100.00%
Bootstrap support for L0PDI1 as seed ortholog is 100%.
Bootstrap support for B3L4S8 as seed ortholog is 100%.

Group of orthologs #332. Best score 205 bits
Score difference with first non-orthologous sequence - P.jiroveci:205 P.knowlesi:205

L0PE77              	100.00%		B3LCV6              	100.00%
Bootstrap support for L0PE77 as seed ortholog is 100%.
Bootstrap support for B3LCV6 as seed ortholog is 100%.

Group of orthologs #333. Best score 204 bits
Score difference with first non-orthologous sequence - P.jiroveci:204 P.knowlesi:112

L0PGH8              	100.00%		B3L5J3              	100.00%
Bootstrap support for L0PGH8 as seed ortholog is 100%.
Bootstrap support for B3L5J3 as seed ortholog is 99%.

Group of orthologs #334. Best score 203 bits
Score difference with first non-orthologous sequence - P.jiroveci:203 P.knowlesi:203

L0PCH0              	100.00%		B3L7G9              	100.00%
Bootstrap support for L0PCH0 as seed ortholog is 100%.
Bootstrap support for B3L7G9 as seed ortholog is 100%.

Group of orthologs #335. Best score 203 bits
Score difference with first non-orthologous sequence - P.jiroveci:203 P.knowlesi:203

L0PE17              	100.00%		B3LA43              	100.00%
Bootstrap support for L0PE17 as seed ortholog is 100%.
Bootstrap support for B3LA43 as seed ortholog is 100%.

Group of orthologs #336. Best score 202 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.knowlesi:144

L0PCJ2              	100.00%		B3L3Q4              	100.00%
Bootstrap support for L0PCJ2 as seed ortholog is 99%.
Bootstrap support for B3L3Q4 as seed ortholog is 100%.

Group of orthologs #337. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:119

L0PB67              	100.00%		B3L322              	100.00%
Bootstrap support for L0PB67 as seed ortholog is 93%.
Bootstrap support for B3L322 as seed ortholog is 99%.

Group of orthologs #338. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 P.knowlesi:201

L0PFQ3              	100.00%		B3KZF5              	100.00%
Bootstrap support for L0PFQ3 as seed ortholog is 100%.
Bootstrap support for B3KZF5 as seed ortholog is 100%.

Group of orthologs #339. Best score 201 bits
Score difference with first non-orthologous sequence - P.jiroveci:201 P.knowlesi:201

L0PF79              	100.00%		B3L5F7              	100.00%
Bootstrap support for L0PF79 as seed ortholog is 100%.
Bootstrap support for B3L5F7 as seed ortholog is 100%.

Group of orthologs #340. Best score 200 bits
Score difference with first non-orthologous sequence - P.jiroveci:200 P.knowlesi:30

L0PDB8              	100.00%		B3KZA2              	100.00%
Bootstrap support for L0PDB8 as seed ortholog is 100%.
Bootstrap support for B3KZA2 as seed ortholog is 83%.

Group of orthologs #341. Best score 199 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 P.knowlesi:199

L0P7Q3              	100.00%		B3L2G0              	100.00%
Bootstrap support for L0P7Q3 as seed ortholog is 100%.
Bootstrap support for B3L2G0 as seed ortholog is 100%.

Group of orthologs #342. Best score 199 bits
Score difference with first non-orthologous sequence - P.jiroveci:199 P.knowlesi:199

L0PF83              	100.00%		B3L6W6              	100.00%
Bootstrap support for L0PF83 as seed ortholog is 100%.
Bootstrap support for B3L6W6 as seed ortholog is 100%.

Group of orthologs #343. Best score 198 bits
Score difference with first non-orthologous sequence - P.jiroveci:198 P.knowlesi:198

L0PBM9              	100.00%		B3L325              	100.00%
Bootstrap support for L0PBM9 as seed ortholog is 100%.
Bootstrap support for B3L325 as seed ortholog is 100%.

Group of orthologs #344. Best score 198 bits
Score difference with first non-orthologous sequence - P.jiroveci:198 P.knowlesi:38

L0PBS9              	100.00%		B3L970              	100.00%
Bootstrap support for L0PBS9 as seed ortholog is 100%.
Bootstrap support for B3L970 as seed ortholog is 91%.

Group of orthologs #345. Best score 198 bits
Score difference with first non-orthologous sequence - P.jiroveci:198 P.knowlesi:198

L0PGL6              	100.00%		B3L9A7              	100.00%
Bootstrap support for L0PGL6 as seed ortholog is 100%.
Bootstrap support for B3L9A7 as seed ortholog is 100%.

Group of orthologs #346. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:197 P.knowlesi:197

L0P8J2              	100.00%		B3L0B0              	100.00%
Bootstrap support for L0P8J2 as seed ortholog is 100%.
Bootstrap support for B3L0B0 as seed ortholog is 100%.

Group of orthologs #347. Best score 197 bits
Score difference with first non-orthologous sequence - P.jiroveci:36 P.knowlesi:197

L0PD43              	100.00%		B3LA90              	100.00%
Bootstrap support for L0PD43 as seed ortholog is 88%.
Bootstrap support for B3LA90 as seed ortholog is 100%.

Group of orthologs #348. Best score 196 bits
Score difference with first non-orthologous sequence - P.jiroveci:196 P.knowlesi:196

L0PBZ6              	100.00%		B3L698              	100.00%
Bootstrap support for L0PBZ6 as seed ortholog is 100%.
Bootstrap support for B3L698 as seed ortholog is 100%.

Group of orthologs #349. Best score 196 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 P.knowlesi:95

L0PEX1              	100.00%		B3L3M8              	100.00%
Bootstrap support for L0PEX1 as seed ortholog is 99%.
Bootstrap support for B3L3M8 as seed ortholog is 99%.

Group of orthologs #350. Best score 196 bits
Score difference with first non-orthologous sequence - P.jiroveci:196 P.knowlesi:196

L0PBS5              	100.00%		B3L734              	100.00%
Bootstrap support for L0PBS5 as seed ortholog is 100%.
Bootstrap support for B3L734 as seed ortholog is 100%.

Group of orthologs #351. Best score 196 bits
Score difference with first non-orthologous sequence - P.jiroveci:196 P.knowlesi:196

L0PA09              	100.00%		B3L9Q8              	100.00%
Bootstrap support for L0PA09 as seed ortholog is 100%.
Bootstrap support for B3L9Q8 as seed ortholog is 100%.

Group of orthologs #352. Best score 195 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 P.knowlesi:195

L0PG33              	100.00%		B3L2P1              	100.00%
Bootstrap support for L0PG33 as seed ortholog is 100%.
Bootstrap support for B3L2P1 as seed ortholog is 100%.

Group of orthologs #353. Best score 195 bits
Score difference with first non-orthologous sequence - P.jiroveci:195 P.knowlesi:195

L0PAE8              	100.00%		B3LBZ3              	100.00%
Bootstrap support for L0PAE8 as seed ortholog is 100%.
Bootstrap support for B3LBZ3 as seed ortholog is 100%.

Group of orthologs #354. Best score 194 bits
Score difference with first non-orthologous sequence - P.jiroveci:194 P.knowlesi:194

L0PCU0              	100.00%		B3L963              	100.00%
Bootstrap support for L0PCU0 as seed ortholog is 100%.
Bootstrap support for B3L963 as seed ortholog is 100%.

Group of orthologs #355. Best score 194 bits
Score difference with first non-orthologous sequence - P.jiroveci:85 P.knowlesi:110

L0PFN2              	100.00%		B3LBF2              	100.00%
Bootstrap support for L0PFN2 as seed ortholog is 100%.
Bootstrap support for B3LBF2 as seed ortholog is 100%.

Group of orthologs #356. Best score 193 bits
Score difference with first non-orthologous sequence - P.jiroveci:193 P.knowlesi:193

L0PES3              	100.00%		B3L3I1              	100.00%
Bootstrap support for L0PES3 as seed ortholog is 100%.
Bootstrap support for B3L3I1 as seed ortholog is 100%.

Group of orthologs #357. Best score 192 bits
Score difference with first non-orthologous sequence - P.jiroveci:18 P.knowlesi:62

L0PDN2              	100.00%		B3L8L4              	100.00%
                    	       		B3L498              	21.19%
                    	       		B3L0H8              	15.76%
                    	       		B3L068              	13.67%
Bootstrap support for L0PDN2 as seed ortholog is 73%.
Alternative seed ortholog is L0PCN5 (18 bits away from this cluster)
Bootstrap support for B3L8L4 as seed ortholog is 92%.

Group of orthologs #358. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 P.knowlesi:65

L0PAP9              	100.00%		B3L4Y4              	100.00%
Bootstrap support for L0PAP9 as seed ortholog is 100%.
Bootstrap support for B3L4Y4 as seed ortholog is 99%.

Group of orthologs #359. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 P.knowlesi:31

L0PDT0              	100.00%		B3L9V4              	100.00%
Bootstrap support for L0PDT0 as seed ortholog is 100%.
Bootstrap support for B3L9V4 as seed ortholog is 80%.

Group of orthologs #360. Best score 191 bits
Score difference with first non-orthologous sequence - P.jiroveci:191 P.knowlesi:191

L0PG08              	100.00%		B3L830              	100.00%
Bootstrap support for L0PG08 as seed ortholog is 100%.
Bootstrap support for B3L830 as seed ortholog is 100%.

Group of orthologs #361. Best score 190 bits
Score difference with first non-orthologous sequence - P.jiroveci:190 P.knowlesi:190

L0PCE9              	100.00%		B3LC99              	100.00%
L0PBP3              	6.61%		
L0PBN5              	6.01%		
Bootstrap support for L0PCE9 as seed ortholog is 100%.
Bootstrap support for B3LC99 as seed ortholog is 100%.

Group of orthologs #362. Best score 190 bits
Score difference with first non-orthologous sequence - P.jiroveci:134 P.knowlesi:43

L0P992              	100.00%		B3KZH1              	100.00%
Bootstrap support for L0P992 as seed ortholog is 99%.
Bootstrap support for B3KZH1 as seed ortholog is 72%.
Alternative seed ortholog is B3L8T8 (43 bits away from this cluster)

Group of orthologs #363. Best score 189 bits
Score difference with first non-orthologous sequence - P.jiroveci:189 P.knowlesi:123

L0PBX0              	100.00%		B3L5G8              	100.00%
Bootstrap support for L0PBX0 as seed ortholog is 100%.
Bootstrap support for B3L5G8 as seed ortholog is 99%.

Group of orthologs #364. Best score 189 bits
Score difference with first non-orthologous sequence - P.jiroveci:189 P.knowlesi:189

L0PAP1              	100.00%		B3LAU8              	100.00%
Bootstrap support for L0PAP1 as seed ortholog is 100%.
Bootstrap support for B3LAU8 as seed ortholog is 100%.

Group of orthologs #365. Best score 188 bits
Score difference with first non-orthologous sequence - P.jiroveci:188 P.knowlesi:188

L0PDT8              	100.00%		B3L838              	100.00%
L0P9R2              	91.61%		
Bootstrap support for L0PDT8 as seed ortholog is 100%.
Bootstrap support for B3L838 as seed ortholog is 100%.

Group of orthologs #366. Best score 188 bits
Score difference with first non-orthologous sequence - P.jiroveci:188 P.knowlesi:188

L0PB66              	100.00%		B3L443              	100.00%
Bootstrap support for L0PB66 as seed ortholog is 100%.
Bootstrap support for B3L443 as seed ortholog is 100%.

Group of orthologs #367. Best score 188 bits
Score difference with first non-orthologous sequence - P.jiroveci:188 P.knowlesi:188

L0PH55              	100.00%		B3KZ23              	100.00%
Bootstrap support for L0PH55 as seed ortholog is 100%.
Bootstrap support for B3KZ23 as seed ortholog is 100%.

Group of orthologs #368. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 P.knowlesi:187

L0P9K4              	100.00%		B3L784              	100.00%
Bootstrap support for L0P9K4 as seed ortholog is 100%.
Bootstrap support for B3L784 as seed ortholog is 100%.

Group of orthologs #369. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:187 P.knowlesi:187

L0P896              	100.00%		B3LA23              	100.00%
Bootstrap support for L0P896 as seed ortholog is 100%.
Bootstrap support for B3LA23 as seed ortholog is 100%.

Group of orthologs #370. Best score 187 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.knowlesi:187

L0PAW4              	100.00%		B3LB10              	100.00%
Bootstrap support for L0PAW4 as seed ortholog is 99%.
Bootstrap support for B3LB10 as seed ortholog is 100%.

Group of orthologs #371. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 P.knowlesi:186

L0P8J0              	100.00%		B3L7Q6              	100.00%
Bootstrap support for L0P8J0 as seed ortholog is 100%.
Bootstrap support for B3L7Q6 as seed ortholog is 100%.

Group of orthologs #372. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 P.knowlesi:186

L0PD35              	100.00%		B3L635              	100.00%
Bootstrap support for L0PD35 as seed ortholog is 100%.
Bootstrap support for B3L635 as seed ortholog is 100%.

Group of orthologs #373. Best score 186 bits
Score difference with first non-orthologous sequence - P.jiroveci:186 P.knowlesi:186

L0PBL5              	100.00%		B3LC44              	100.00%
Bootstrap support for L0PBL5 as seed ortholog is 100%.
Bootstrap support for B3LC44 as seed ortholog is 100%.

Group of orthologs #374. Best score 185 bits
Score difference with first non-orthologous sequence - P.jiroveci:185 P.knowlesi:185

L0PFL8              	100.00%		B3L3W7              	100.00%
Bootstrap support for L0PFL8 as seed ortholog is 100%.
Bootstrap support for B3L3W7 as seed ortholog is 100%.

Group of orthologs #375. Best score 185 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 P.knowlesi:185

L0PHI3              	100.00%		B3LA78              	100.00%
Bootstrap support for L0PHI3 as seed ortholog is 99%.
Bootstrap support for B3LA78 as seed ortholog is 100%.

Group of orthologs #376. Best score 185 bits
Score difference with first non-orthologous sequence - P.jiroveci:123 P.knowlesi:185

L0PHJ3              	100.00%		B3LAH8              	100.00%
Bootstrap support for L0PHJ3 as seed ortholog is 99%.
Bootstrap support for B3LAH8 as seed ortholog is 100%.

Group of orthologs #377. Best score 184 bits
Score difference with first non-orthologous sequence - P.jiroveci:184 P.knowlesi:184

L0P9I0              	100.00%		B3L435              	100.00%
Bootstrap support for L0P9I0 as seed ortholog is 100%.
Bootstrap support for B3L435 as seed ortholog is 100%.

Group of orthologs #378. Best score 184 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:74

L0PHW8              	100.00%		B3LC19              	100.00%
Bootstrap support for L0PHW8 as seed ortholog is 99%.
Bootstrap support for B3LC19 as seed ortholog is 99%.

Group of orthologs #379. Best score 183 bits
Score difference with first non-orthologous sequence - P.jiroveci:183 P.knowlesi:27

L0P905              	100.00%		B3L633              	100.00%
Bootstrap support for L0P905 as seed ortholog is 100%.
Bootstrap support for B3L633 as seed ortholog is 56%.
Alternative seed ortholog is B3LCT1 (27 bits away from this cluster)

Group of orthologs #380. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:182 P.knowlesi:182

L0PAC4              	100.00%		B3L610              	100.00%
L0P871              	98.46%		
Bootstrap support for L0PAC4 as seed ortholog is 100%.
Bootstrap support for B3L610 as seed ortholog is 100%.

Group of orthologs #381. Best score 182 bits
Score difference with first non-orthologous sequence - P.jiroveci:182 P.knowlesi:182

L0P9X7              	100.00%		B3L4J2              	100.00%
Bootstrap support for L0P9X7 as seed ortholog is 100%.
Bootstrap support for B3L4J2 as seed ortholog is 100%.

Group of orthologs #382. Best score 180 bits
Score difference with first non-orthologous sequence - P.jiroveci:180 P.knowlesi:180

L0P9B6              	100.00%		B3LCP7              	100.00%
Bootstrap support for L0P9B6 as seed ortholog is 100%.
Bootstrap support for B3LCP7 as seed ortholog is 100%.

Group of orthologs #383. Best score 179 bits
Score difference with first non-orthologous sequence - P.jiroveci:179 P.knowlesi:179

L0PDH2              	100.00%		B3LAL0              	100.00%
Bootstrap support for L0PDH2 as seed ortholog is 100%.
Bootstrap support for B3LAL0 as seed ortholog is 100%.

Group of orthologs #384. Best score 179 bits
Score difference with first non-orthologous sequence - P.jiroveci:30 P.knowlesi:17

L0PC98              	100.00%		B3LD60              	100.00%
Bootstrap support for L0PC98 as seed ortholog is 91%.
Bootstrap support for B3LD60 as seed ortholog is 65%.
Alternative seed ortholog is B3L6M6 (17 bits away from this cluster)

Group of orthologs #385. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 P.knowlesi:178

L0PG93              	100.00%		B3L4B2              	100.00%
Bootstrap support for L0PG93 as seed ortholog is 89%.
Bootstrap support for B3L4B2 as seed ortholog is 100%.

Group of orthologs #386. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:178 P.knowlesi:178

L0PEM3              	100.00%		B3L5Y9              	100.00%
Bootstrap support for L0PEM3 as seed ortholog is 100%.
Bootstrap support for B3L5Y9 as seed ortholog is 100%.

Group of orthologs #387. Best score 178 bits
Score difference with first non-orthologous sequence - P.jiroveci:178 P.knowlesi:178

L0PBE8              	100.00%		B3LCI8              	100.00%
Bootstrap support for L0PBE8 as seed ortholog is 100%.
Bootstrap support for B3LCI8 as seed ortholog is 100%.

Group of orthologs #388. Best score 177 bits
Score difference with first non-orthologous sequence - P.jiroveci:177 P.knowlesi:177

L0PC53              	100.00%		B3LAS9              	100.00%
Bootstrap support for L0PC53 as seed ortholog is 100%.
Bootstrap support for B3LAS9 as seed ortholog is 100%.

Group of orthologs #389. Best score 177 bits
Score difference with first non-orthologous sequence - P.jiroveci:177 P.knowlesi:177

L0PD65              	100.00%		B3LB29              	100.00%
Bootstrap support for L0PD65 as seed ortholog is 100%.
Bootstrap support for B3LB29 as seed ortholog is 100%.

Group of orthologs #390. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:176 P.knowlesi:176

L0PC68              	100.00%		B3L1L3              	100.00%
Bootstrap support for L0PC68 as seed ortholog is 100%.
Bootstrap support for B3L1L3 as seed ortholog is 100%.

Group of orthologs #391. Best score 176 bits
Score difference with first non-orthologous sequence - P.jiroveci:176 P.knowlesi:76

L0PFQ4              	100.00%		B3L4W6              	100.00%
Bootstrap support for L0PFQ4 as seed ortholog is 100%.
Bootstrap support for B3L4W6 as seed ortholog is 99%.

Group of orthologs #392. Best score 175 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.knowlesi:50

L0PAY4              	100.00%		B3L7N0              	100.00%
Bootstrap support for L0PAY4 as seed ortholog is 100%.
Bootstrap support for B3L7N0 as seed ortholog is 99%.

Group of orthologs #393. Best score 175 bits
Score difference with first non-orthologous sequence - P.jiroveci:175 P.knowlesi:175

L0PCW8              	100.00%		B3LCI0              	100.00%
Bootstrap support for L0PCW8 as seed ortholog is 100%.
Bootstrap support for B3LCI0 as seed ortholog is 100%.

Group of orthologs #394. Best score 174 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:174

L0P863              	100.00%		B3L632              	100.00%
Bootstrap support for L0P863 as seed ortholog is 94%.
Bootstrap support for B3L632 as seed ortholog is 100%.

Group of orthologs #395. Best score 174 bits
Score difference with first non-orthologous sequence - P.jiroveci:174 P.knowlesi:174

L0PGQ4              	100.00%		B3L3Y9              	100.00%
Bootstrap support for L0PGQ4 as seed ortholog is 100%.
Bootstrap support for B3L3Y9 as seed ortholog is 100%.

Group of orthologs #396. Best score 173 bits
Score difference with first non-orthologous sequence - P.jiroveci:173 P.knowlesi:173

L0P9R8              	100.00%		B3L2P9              	100.00%
Bootstrap support for L0P9R8 as seed ortholog is 100%.
Bootstrap support for B3L2P9 as seed ortholog is 100%.

Group of orthologs #397. Best score 173 bits
Score difference with first non-orthologous sequence - P.jiroveci:173 P.knowlesi:173

L0P9Y2              	100.00%		B3L3H1              	100.00%
Bootstrap support for L0P9Y2 as seed ortholog is 100%.
Bootstrap support for B3L3H1 as seed ortholog is 100%.

Group of orthologs #398. Best score 173 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:69

L0PAS2              	100.00%		B3L5Z0              	100.00%
Bootstrap support for L0PAS2 as seed ortholog is 99%.
Bootstrap support for B3L5Z0 as seed ortholog is 99%.

Group of orthologs #399. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:172

L0PBV6              	100.00%		B3KZ72              	100.00%
Bootstrap support for L0PBV6 as seed ortholog is 100%.
Bootstrap support for B3KZ72 as seed ortholog is 100%.

Group of orthologs #400. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:172

L0PA36              	100.00%		B3L2I9              	100.00%
Bootstrap support for L0PA36 as seed ortholog is 100%.
Bootstrap support for B3L2I9 as seed ortholog is 100%.

Group of orthologs #401. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:77

L0P7P4              	100.00%		B3L4R3              	100.00%
Bootstrap support for L0P7P4 as seed ortholog is 100%.
Bootstrap support for B3L4R3 as seed ortholog is 98%.

Group of orthologs #402. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:172

L0PCV8              	100.00%		B3L3L2              	100.00%
Bootstrap support for L0PCV8 as seed ortholog is 100%.
Bootstrap support for B3L3L2 as seed ortholog is 100%.

Group of orthologs #403. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:172

L0PAC1              	100.00%		B3L8I6              	100.00%
Bootstrap support for L0PAC1 as seed ortholog is 100%.
Bootstrap support for B3L8I6 as seed ortholog is 100%.

Group of orthologs #404. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 P.knowlesi:77

L0P7B1              	100.00%		B3LC83              	100.00%
Bootstrap support for L0P7B1 as seed ortholog is 97%.
Bootstrap support for B3LC83 as seed ortholog is 99%.

Group of orthologs #405. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:172

L0PHG9              	100.00%		B3L7Y4              	100.00%
Bootstrap support for L0PHG9 as seed ortholog is 100%.
Bootstrap support for B3L7Y4 as seed ortholog is 100%.

Group of orthologs #406. Best score 172 bits
Score difference with first non-orthologous sequence - P.jiroveci:172 P.knowlesi:23

L0PG89              	100.00%		B3LAT3              	100.00%
Bootstrap support for L0PG89 as seed ortholog is 100%.
Bootstrap support for B3LAT3 as seed ortholog is 69%.
Alternative seed ortholog is B3L480 (23 bits away from this cluster)

Group of orthologs #407. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:171 P.knowlesi:171

L0PBT9              	100.00%		B3LA40              	100.00%
L0P9Y0              	51.52%		
Bootstrap support for L0PBT9 as seed ortholog is 100%.
Bootstrap support for B3LA40 as seed ortholog is 100%.

Group of orthologs #408. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:171 P.knowlesi:171

L0P865              	100.00%		B3LAE7              	100.00%
Bootstrap support for L0P865 as seed ortholog is 100%.
Bootstrap support for B3LAE7 as seed ortholog is 100%.

Group of orthologs #409. Best score 171 bits
Score difference with first non-orthologous sequence - P.jiroveci:171 P.knowlesi:171

L0PC18              	100.00%		B3L7Q9              	100.00%
Bootstrap support for L0PC18 as seed ortholog is 100%.
Bootstrap support for B3L7Q9 as seed ortholog is 100%.

Group of orthologs #410. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:170 P.knowlesi:71

L0P838              	100.00%		B3KZZ3              	100.00%
Bootstrap support for L0P838 as seed ortholog is 100%.
Bootstrap support for B3KZZ3 as seed ortholog is 98%.

Group of orthologs #411. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 P.knowlesi:170

L0PAL2              	100.00%		B3L059              	100.00%
Bootstrap support for L0PAL2 as seed ortholog is 99%.
Bootstrap support for B3L059 as seed ortholog is 100%.

Group of orthologs #412. Best score 170 bits
Score difference with first non-orthologous sequence - P.jiroveci:6 P.knowlesi:80

L0PHH9              	100.00%		B3L2M7              	100.00%
Bootstrap support for L0PHH9 as seed ortholog is 61%.
Alternative seed ortholog is L0PA17 (6 bits away from this cluster)
Bootstrap support for B3L2M7 as seed ortholog is 99%.

Group of orthologs #413. Best score 168 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 P.knowlesi:168

L0P9N5              	100.00%		B3L230              	100.00%
Bootstrap support for L0P9N5 as seed ortholog is 100%.
Bootstrap support for B3L230 as seed ortholog is 100%.

Group of orthologs #414. Best score 167 bits
Score difference with first non-orthologous sequence - P.jiroveci:167 P.knowlesi:123

L0P8L5              	100.00%		B3L1A5              	100.00%
Bootstrap support for L0P8L5 as seed ortholog is 100%.
Bootstrap support for B3L1A5 as seed ortholog is 99%.

Group of orthologs #415. Best score 166 bits
Score difference with first non-orthologous sequence - P.jiroveci:166 P.knowlesi:166

L0P9S7              	100.00%		B3L4B7              	100.00%
Bootstrap support for L0P9S7 as seed ortholog is 100%.
Bootstrap support for B3L4B7 as seed ortholog is 100%.

Group of orthologs #416. Best score 166 bits
Score difference with first non-orthologous sequence - P.jiroveci:166 P.knowlesi:166

L0PAA4              	100.00%		B3LAK3              	100.00%
Bootstrap support for L0PAA4 as seed ortholog is 100%.
Bootstrap support for B3LAK3 as seed ortholog is 100%.

Group of orthologs #417. Best score 165 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 P.knowlesi:100

L0PB84              	100.00%		B3KZJ5              	100.00%
Bootstrap support for L0PB84 as seed ortholog is 99%.
Bootstrap support for B3KZJ5 as seed ortholog is 99%.

Group of orthologs #418. Best score 164 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:33

L0PGT3              	100.00%		B3L9Z7              	100.00%
Bootstrap support for L0PGT3 as seed ortholog is 99%.
Bootstrap support for B3L9Z7 as seed ortholog is 80%.

Group of orthologs #419. Best score 163 bits
Score difference with first non-orthologous sequence - P.jiroveci:163 P.knowlesi:94

L0P9I3              	100.00%		B3L291              	100.00%
Bootstrap support for L0P9I3 as seed ortholog is 100%.
Bootstrap support for B3L291 as seed ortholog is 99%.

Group of orthologs #420. Best score 163 bits
Score difference with first non-orthologous sequence - P.jiroveci:163 P.knowlesi:43

L0PAA8              	100.00%		B3L5X6              	100.00%
Bootstrap support for L0PAA8 as seed ortholog is 100%.
Bootstrap support for B3L5X6 as seed ortholog is 93%.

Group of orthologs #421. Best score 163 bits
Score difference with first non-orthologous sequence - P.jiroveci:163 P.knowlesi:163

L0PGY0              	100.00%		B3L879              	100.00%
Bootstrap support for L0PGY0 as seed ortholog is 100%.
Bootstrap support for B3L879 as seed ortholog is 100%.

Group of orthologs #422. Best score 163 bits
Score difference with first non-orthologous sequence - P.jiroveci:163 P.knowlesi:163

L0PEJ3              	100.00%		B3LCD7              	100.00%
Bootstrap support for L0PEJ3 as seed ortholog is 100%.
Bootstrap support for B3LCD7 as seed ortholog is 100%.

Group of orthologs #423. Best score 162 bits
Score difference with first non-orthologous sequence - P.jiroveci:162 P.knowlesi:162

L0P9M9              	100.00%		B3L831              	100.00%
Bootstrap support for L0P9M9 as seed ortholog is 100%.
Bootstrap support for B3L831 as seed ortholog is 100%.

Group of orthologs #424. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 P.knowlesi:63

L0PEX6              	100.00%		B3L239              	100.00%
                    	       		B3KZK4              	27.98%
Bootstrap support for L0PEX6 as seed ortholog is 98%.
Bootstrap support for B3L239 as seed ortholog is 98%.

Group of orthologs #425. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:105 P.knowlesi:161

L0PBU7              	100.00%		B3L410              	100.00%
Bootstrap support for L0PBU7 as seed ortholog is 100%.
Bootstrap support for B3L410 as seed ortholog is 100%.

Group of orthologs #426. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:161 P.knowlesi:161

L0PEX0              	100.00%		B3L1U4              	100.00%
Bootstrap support for L0PEX0 as seed ortholog is 100%.
Bootstrap support for B3L1U4 as seed ortholog is 100%.

Group of orthologs #427. Best score 161 bits
Score difference with first non-orthologous sequence - P.jiroveci:31 P.knowlesi:54

L0P8M4              	100.00%		B3LCV2              	100.00%
Bootstrap support for L0P8M4 as seed ortholog is 89%.
Bootstrap support for B3LCV2 as seed ortholog is 97%.

Group of orthologs #428. Best score 160 bits
Score difference with first non-orthologous sequence - P.jiroveci:160 P.knowlesi:160

L0PCG1              	100.00%		B3L3I6              	100.00%
Bootstrap support for L0PCG1 as seed ortholog is 100%.
Bootstrap support for B3L3I6 as seed ortholog is 100%.

Group of orthologs #429. Best score 159 bits
Score difference with first non-orthologous sequence - P.jiroveci:159 P.knowlesi:35

L0PAQ7              	100.00%		B3L4I9              	100.00%
Bootstrap support for L0PAQ7 as seed ortholog is 100%.
Bootstrap support for B3L4I9 as seed ortholog is 89%.

Group of orthologs #430. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 P.knowlesi:158

L0PFD7              	100.00%		B3L2P4              	100.00%
Bootstrap support for L0PFD7 as seed ortholog is 100%.
Bootstrap support for B3L2P4 as seed ortholog is 100%.

Group of orthologs #431. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 P.knowlesi:158

L0PB81              	100.00%		B3L7M5              	100.00%
Bootstrap support for L0PB81 as seed ortholog is 100%.
Bootstrap support for B3L7M5 as seed ortholog is 100%.

Group of orthologs #432. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 P.knowlesi:158

L0PFE9              	100.00%		B3L6N7              	100.00%
Bootstrap support for L0PFE9 as seed ortholog is 100%.
Bootstrap support for B3L6N7 as seed ortholog is 100%.

Group of orthologs #433. Best score 158 bits
Score difference with first non-orthologous sequence - P.jiroveci:158 P.knowlesi:158

L0PFZ1              	100.00%		B3LB24              	100.00%
Bootstrap support for L0PFZ1 as seed ortholog is 100%.
Bootstrap support for B3LB24 as seed ortholog is 100%.

Group of orthologs #434. Best score 157 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 P.knowlesi:157

L0P8F0              	100.00%		B3L3P6              	100.00%
Bootstrap support for L0P8F0 as seed ortholog is 100%.
Bootstrap support for B3L3P6 as seed ortholog is 100%.

Group of orthologs #435. Best score 157 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 P.knowlesi:157

L0P9C9              	100.00%		B3L5A7              	100.00%
Bootstrap support for L0P9C9 as seed ortholog is 100%.
Bootstrap support for B3L5A7 as seed ortholog is 100%.

Group of orthologs #436. Best score 157 bits
Score difference with first non-orthologous sequence - P.jiroveci:157 P.knowlesi:157

L0PDL5              	100.00%		B3L6H9              	100.00%
Bootstrap support for L0PDL5 as seed ortholog is 100%.
Bootstrap support for B3L6H9 as seed ortholog is 100%.

Group of orthologs #437. Best score 156 bits
Score difference with first non-orthologous sequence - P.jiroveci:156 P.knowlesi:156

L0PBN7              	100.00%		B3L1K9              	100.00%
Bootstrap support for L0PBN7 as seed ortholog is 100%.
Bootstrap support for B3L1K9 as seed ortholog is 100%.

Group of orthologs #438. Best score 156 bits
Score difference with first non-orthologous sequence - P.jiroveci:156 P.knowlesi:156

L0PEA3              	100.00%		B3L5D5              	100.00%
Bootstrap support for L0PEA3 as seed ortholog is 100%.
Bootstrap support for B3L5D5 as seed ortholog is 100%.

Group of orthologs #439. Best score 156 bits
Score difference with first non-orthologous sequence - P.jiroveci:156 P.knowlesi:156

L0PE09              	100.00%		B3L9G8              	100.00%
Bootstrap support for L0PE09 as seed ortholog is 100%.
Bootstrap support for B3L9G8 as seed ortholog is 100%.

Group of orthologs #440. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 P.knowlesi:155

L0PBJ0              	100.00%		B3L5W9              	100.00%
Bootstrap support for L0PBJ0 as seed ortholog is 100%.
Bootstrap support for B3L5W9 as seed ortholog is 100%.

Group of orthologs #441. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 P.knowlesi:155

L0PFN4              	100.00%		B3L8H8              	100.00%
Bootstrap support for L0PFN4 as seed ortholog is 100%.
Bootstrap support for B3L8H8 as seed ortholog is 100%.

Group of orthologs #442. Best score 155 bits
Score difference with first non-orthologous sequence - P.jiroveci:155 P.knowlesi:155

L0PGD6              	100.00%		B3LBI7              	100.00%
Bootstrap support for L0PGD6 as seed ortholog is 100%.
Bootstrap support for B3LBI7 as seed ortholog is 100%.

Group of orthologs #443. Best score 153 bits
Score difference with first non-orthologous sequence - P.jiroveci:153 P.knowlesi:153

L0PAG1              	100.00%		B3L0X4              	100.00%
Bootstrap support for L0PAG1 as seed ortholog is 100%.
Bootstrap support for B3L0X4 as seed ortholog is 100%.

Group of orthologs #444. Best score 152 bits
Score difference with first non-orthologous sequence - P.jiroveci:152 P.knowlesi:152

L0PGE7              	100.00%		B3L032              	100.00%
Bootstrap support for L0PGE7 as seed ortholog is 100%.
Bootstrap support for B3L032 as seed ortholog is 100%.

Group of orthologs #445. Best score 151 bits
Score difference with first non-orthologous sequence - P.jiroveci:151 P.knowlesi:151

L0P8B2              	100.00%		B3L3C1              	100.00%
Bootstrap support for L0P8B2 as seed ortholog is 100%.
Bootstrap support for B3L3C1 as seed ortholog is 100%.

Group of orthologs #446. Best score 151 bits
Score difference with first non-orthologous sequence - P.jiroveci:151 P.knowlesi:151

L0P800              	100.00%		B3LBE7              	100.00%
Bootstrap support for L0P800 as seed ortholog is 100%.
Bootstrap support for B3LBE7 as seed ortholog is 100%.

Group of orthologs #447. Best score 151 bits
Score difference with first non-orthologous sequence - P.jiroveci:151 P.knowlesi:151

L0PD37              	100.00%		B3LA20              	100.00%
Bootstrap support for L0PD37 as seed ortholog is 100%.
Bootstrap support for B3LA20 as seed ortholog is 100%.

Group of orthologs #448. Best score 151 bits
Score difference with first non-orthologous sequence - P.jiroveci:151 P.knowlesi:151

L0PGX9              	100.00%		B3L7X1              	100.00%
Bootstrap support for L0PGX9 as seed ortholog is 100%.
Bootstrap support for B3L7X1 as seed ortholog is 100%.

Group of orthologs #449. Best score 150 bits
Score difference with first non-orthologous sequence - P.jiroveci:150 P.knowlesi:150

L0PDW5              	100.00%		B3L9M4              	100.00%
Bootstrap support for L0PDW5 as seed ortholog is 100%.
Bootstrap support for B3L9M4 as seed ortholog is 100%.

Group of orthologs #450. Best score 149 bits
Score difference with first non-orthologous sequence - P.jiroveci:149 P.knowlesi:149

L0PCU6              	100.00%		B3L7H0              	100.00%
Bootstrap support for L0PCU6 as seed ortholog is 100%.
Bootstrap support for B3L7H0 as seed ortholog is 100%.

Group of orthologs #451. Best score 149 bits
Score difference with first non-orthologous sequence - P.jiroveci:149 P.knowlesi:149

L0PG44              	100.00%		B3L9S0              	100.00%
Bootstrap support for L0PG44 as seed ortholog is 100%.
Bootstrap support for B3L9S0 as seed ortholog is 100%.

Group of orthologs #452. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 P.knowlesi:45

L0PCC3              	100.00%		B3KZK6              	100.00%
Bootstrap support for L0PCC3 as seed ortholog is 98%.
Bootstrap support for B3KZK6 as seed ortholog is 96%.

Group of orthologs #453. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:148 P.knowlesi:148

L0PEB2              	100.00%		B3L4P4              	100.00%
Bootstrap support for L0PEB2 as seed ortholog is 100%.
Bootstrap support for B3L4P4 as seed ortholog is 100%.

Group of orthologs #454. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:148 P.knowlesi:94

L0PCA8              	100.00%		B3L8R4              	100.00%
Bootstrap support for L0PCA8 as seed ortholog is 100%.
Bootstrap support for B3L8R4 as seed ortholog is 99%.

Group of orthologs #455. Best score 148 bits
Score difference with first non-orthologous sequence - P.jiroveci:148 P.knowlesi:40

L0PDN4              	100.00%		B3L910              	100.00%
Bootstrap support for L0PDN4 as seed ortholog is 100%.
Bootstrap support for B3L910 as seed ortholog is 84%.

Group of orthologs #456. Best score 147 bits
Score difference with first non-orthologous sequence - P.jiroveci:147 P.knowlesi:147

L0PD32              	100.00%		B3L303              	100.00%
L0PD26              	95.41%		
Bootstrap support for L0PD32 as seed ortholog is 100%.
Bootstrap support for B3L303 as seed ortholog is 100%.

Group of orthologs #457. Best score 147 bits
Score difference with first non-orthologous sequence - P.jiroveci:147 P.knowlesi:147

L0PA78              	100.00%		B3L0E1              	100.00%
Bootstrap support for L0PA78 as seed ortholog is 100%.
Bootstrap support for B3L0E1 as seed ortholog is 100%.

Group of orthologs #458. Best score 147 bits
Score difference with first non-orthologous sequence - P.jiroveci:147 P.knowlesi:147

L0P8Y0              	100.00%		B3L2L4              	100.00%
Bootstrap support for L0P8Y0 as seed ortholog is 100%.
Bootstrap support for B3L2L4 as seed ortholog is 100%.

Group of orthologs #459. Best score 147 bits
Score difference with first non-orthologous sequence - P.jiroveci:147 P.knowlesi:147

L0PGZ5              	100.00%		B3LC68              	100.00%
Bootstrap support for L0PGZ5 as seed ortholog is 100%.
Bootstrap support for B3LC68 as seed ortholog is 100%.

Group of orthologs #460. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:146 P.knowlesi:146

L0P848              	100.00%		B3L3R9              	100.00%
L0P867              	90.95%		
Bootstrap support for L0P848 as seed ortholog is 100%.
Bootstrap support for B3L3R9 as seed ortholog is 100%.

Group of orthologs #461. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:146 P.knowlesi:146

L0P9G1              	100.00%		B3L441              	100.00%
Bootstrap support for L0P9G1 as seed ortholog is 100%.
Bootstrap support for B3L441 as seed ortholog is 100%.

Group of orthologs #462. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:146 P.knowlesi:146

L0PFL0              	100.00%		B3L2R8              	100.00%
Bootstrap support for L0PFL0 as seed ortholog is 100%.
Bootstrap support for B3L2R8 as seed ortholog is 100%.

Group of orthologs #463. Best score 146 bits
Score difference with first non-orthologous sequence - P.jiroveci:146 P.knowlesi:146

L0PG81              	100.00%		B3LBW4              	100.00%
Bootstrap support for L0PG81 as seed ortholog is 100%.
Bootstrap support for B3LBW4 as seed ortholog is 100%.

Group of orthologs #464. Best score 145 bits
Score difference with first non-orthologous sequence - P.jiroveci:145 P.knowlesi:145

L0PH54              	100.00%		B3LB59              	100.00%
Bootstrap support for L0PH54 as seed ortholog is 100%.
Bootstrap support for B3LB59 as seed ortholog is 100%.

Group of orthologs #465. Best score 144 bits
Score difference with first non-orthologous sequence - P.jiroveci:144 P.knowlesi:144

L0PAI0              	100.00%		B3L542              	100.00%
Bootstrap support for L0PAI0 as seed ortholog is 100%.
Bootstrap support for B3L542 as seed ortholog is 100%.

Group of orthologs #466. Best score 144 bits
Score difference with first non-orthologous sequence - P.jiroveci:144 P.knowlesi:144

L0PD44              	100.00%		B3L672              	100.00%
Bootstrap support for L0PD44 as seed ortholog is 100%.
Bootstrap support for B3L672 as seed ortholog is 100%.

Group of orthologs #467. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 P.knowlesi:143

L0PD97              	100.00%		B3L1N7              	100.00%
Bootstrap support for L0PD97 as seed ortholog is 100%.
Bootstrap support for B3L1N7 as seed ortholog is 100%.

Group of orthologs #468. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 P.knowlesi:143

L0PCQ7              	100.00%		B3L7U7              	100.00%
Bootstrap support for L0PCQ7 as seed ortholog is 100%.
Bootstrap support for B3L7U7 as seed ortholog is 100%.

Group of orthologs #469. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 P.knowlesi:143

L0PDZ2              	100.00%		B3L6W7              	100.00%
Bootstrap support for L0PDZ2 as seed ortholog is 100%.
Bootstrap support for B3L6W7 as seed ortholog is 100%.

Group of orthologs #470. Best score 143 bits
Score difference with first non-orthologous sequence - P.jiroveci:143 P.knowlesi:143

L0P965              	100.00%		B3LD68              	100.00%
Bootstrap support for L0P965 as seed ortholog is 100%.
Bootstrap support for B3LD68 as seed ortholog is 100%.

Group of orthologs #471. Best score 142 bits
Score difference with first non-orthologous sequence - P.jiroveci:142 P.knowlesi:142

L0PEC6              	100.00%		B3L2Z8              	100.00%
Bootstrap support for L0PEC6 as seed ortholog is 100%.
Bootstrap support for B3L2Z8 as seed ortholog is 100%.

Group of orthologs #472. Best score 142 bits
Score difference with first non-orthologous sequence - P.jiroveci:142 P.knowlesi:142

L0PE02              	100.00%		B3LDF8              	100.00%
Bootstrap support for L0PE02 as seed ortholog is 100%.
Bootstrap support for B3LDF8 as seed ortholog is 100%.

Group of orthologs #473. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 P.knowlesi:141

L0PBR7              	100.00%		B3LC36              	100.00%
                    	       		B3L4K3              	8.00%
Bootstrap support for L0PBR7 as seed ortholog is 100%.
Bootstrap support for B3LC36 as seed ortholog is 100%.

Group of orthologs #474. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 P.knowlesi:86

L0P9B8              	100.00%		B3L1E6              	100.00%
Bootstrap support for L0P9B8 as seed ortholog is 100%.
Bootstrap support for B3L1E6 as seed ortholog is 99%.

Group of orthologs #475. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 P.knowlesi:141

L0P9N4              	100.00%		B3L3G6              	100.00%
Bootstrap support for L0P9N4 as seed ortholog is 100%.
Bootstrap support for B3L3G6 as seed ortholog is 100%.

Group of orthologs #476. Best score 141 bits
Score difference with first non-orthologous sequence - P.jiroveci:141 P.knowlesi:141

L0PE85              	100.00%		B3L6U9              	100.00%
Bootstrap support for L0PE85 as seed ortholog is 100%.
Bootstrap support for B3L6U9 as seed ortholog is 100%.

Group of orthologs #477. Best score 140 bits
Score difference with first non-orthologous sequence - P.jiroveci:140 P.knowlesi:140

L0P784              	100.00%		B3L5J4              	100.00%
Bootstrap support for L0P784 as seed ortholog is 100%.
Bootstrap support for B3L5J4 as seed ortholog is 100%.

Group of orthologs #478. Best score 140 bits
Score difference with first non-orthologous sequence - P.jiroveci:140 P.knowlesi:140

L0P7I8              	100.00%		B3L692              	100.00%
Bootstrap support for L0P7I8 as seed ortholog is 100%.
Bootstrap support for B3L692 as seed ortholog is 100%.

Group of orthologs #479. Best score 140 bits
Score difference with first non-orthologous sequence - P.jiroveci:140 P.knowlesi:140

L0PFH7              	100.00%		B3LBX3              	100.00%
Bootstrap support for L0PFH7 as seed ortholog is 100%.
Bootstrap support for B3LBX3 as seed ortholog is 100%.

Group of orthologs #480. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 P.knowlesi:139

L0P8X3              	100.00%		B3L434              	100.00%
Bootstrap support for L0P8X3 as seed ortholog is 100%.
Bootstrap support for B3L434 as seed ortholog is 100%.

Group of orthologs #481. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 P.knowlesi:139

L0P934              	100.00%		B3L4T4              	100.00%
Bootstrap support for L0P934 as seed ortholog is 100%.
Bootstrap support for B3L4T4 as seed ortholog is 100%.

Group of orthologs #482. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 P.knowlesi:139

L0PEW5              	100.00%		B3KZA4              	100.00%
Bootstrap support for L0PEW5 as seed ortholog is 100%.
Bootstrap support for B3KZA4 as seed ortholog is 100%.

Group of orthologs #483. Best score 139 bits
Score difference with first non-orthologous sequence - P.jiroveci:139 P.knowlesi:84

L0PDT4              	100.00%		B3LBY0              	100.00%
Bootstrap support for L0PDT4 as seed ortholog is 100%.
Bootstrap support for B3LBY0 as seed ortholog is 95%.

Group of orthologs #484. Best score 138 bits
Score difference with first non-orthologous sequence - P.jiroveci:138 P.knowlesi:138

L0P8A6              	100.00%		B3L358              	100.00%
Bootstrap support for L0P8A6 as seed ortholog is 100%.
Bootstrap support for B3L358 as seed ortholog is 100%.

Group of orthologs #485. Best score 138 bits
Score difference with first non-orthologous sequence - P.jiroveci:138 P.knowlesi:33

L0PEQ4              	100.00%		B3L2P7              	100.00%
Bootstrap support for L0PEQ4 as seed ortholog is 100%.
Bootstrap support for B3L2P7 as seed ortholog is 80%.

Group of orthologs #486. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 P.knowlesi:137

L0P9P8              	100.00%		B3L6C4              	100.00%
Bootstrap support for L0P9P8 as seed ortholog is 100%.
Bootstrap support for B3L6C4 as seed ortholog is 100%.

Group of orthologs #487. Best score 137 bits
Score difference with first non-orthologous sequence - P.jiroveci:137 P.knowlesi:137

L0PDS0              	100.00%		B3LAX8              	100.00%
Bootstrap support for L0PDS0 as seed ortholog is 100%.
Bootstrap support for B3LAX8 as seed ortholog is 100%.

Group of orthologs #488. Best score 136 bits
Score difference with first non-orthologous sequence - P.jiroveci:136 P.knowlesi:136

L0P8S1              	100.00%		B3L4C4              	100.00%
Bootstrap support for L0P8S1 as seed ortholog is 100%.
Bootstrap support for B3L4C4 as seed ortholog is 100%.

Group of orthologs #489. Best score 135 bits
Score difference with first non-orthologous sequence - P.jiroveci:135 P.knowlesi:135

L0PEV6              	100.00%		B3L8Z7              	100.00%
Bootstrap support for L0PEV6 as seed ortholog is 100%.
Bootstrap support for B3L8Z7 as seed ortholog is 100%.

Group of orthologs #490. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:134 P.knowlesi:134

L0PAH9              	100.00%		B3L2Y1              	100.00%
L0PAZ7              	49.62%		
Bootstrap support for L0PAH9 as seed ortholog is 100%.
Bootstrap support for B3L2Y1 as seed ortholog is 100%.

Group of orthologs #491. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:134 P.knowlesi:134

L0PAL6              	100.00%		B3L2S4              	100.00%
Bootstrap support for L0PAL6 as seed ortholog is 100%.
Bootstrap support for B3L2S4 as seed ortholog is 100%.

Group of orthologs #492. Best score 134 bits
Score difference with first non-orthologous sequence - P.jiroveci:13 P.knowlesi:43

L0PDB7              	100.00%		B3L398              	100.00%
Bootstrap support for L0PDB7 as seed ortholog is 68%.
Alternative seed ortholog is L0P8F5 (13 bits away from this cluster)
Bootstrap support for B3L398 as seed ortholog is 84%.

Group of orthologs #493. Best score 133 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 P.knowlesi:133

L0PBT0              	100.00%		B3L176              	100.00%
Bootstrap support for L0PBT0 as seed ortholog is 100%.
Bootstrap support for B3L176 as seed ortholog is 100%.

Group of orthologs #494. Best score 133 bits
Score difference with first non-orthologous sequence - P.jiroveci:133 P.knowlesi:133

L0PFJ8              	100.00%		B3LCB0              	100.00%
Bootstrap support for L0PFJ8 as seed ortholog is 100%.
Bootstrap support for B3LCB0 as seed ortholog is 100%.

Group of orthologs #495. Best score 132 bits
Score difference with first non-orthologous sequence - P.jiroveci:132 P.knowlesi:39

L0PF33              	100.00%		B3LDF0              	100.00%
Bootstrap support for L0PF33 as seed ortholog is 100%.
Bootstrap support for B3LDF0 as seed ortholog is 93%.

Group of orthologs #496. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.knowlesi:131

L0P9B3              	100.00%		B3L2R0              	100.00%
Bootstrap support for L0P9B3 as seed ortholog is 100%.
Bootstrap support for B3L2R0 as seed ortholog is 100%.

Group of orthologs #497. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.knowlesi:131

L0PAH1              	100.00%		B3L488              	100.00%
Bootstrap support for L0PAH1 as seed ortholog is 100%.
Bootstrap support for B3L488 as seed ortholog is 100%.

Group of orthologs #498. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.knowlesi:131

L0PEI9              	100.00%		B3L673              	100.00%
Bootstrap support for L0PEI9 as seed ortholog is 100%.
Bootstrap support for B3L673 as seed ortholog is 100%.

Group of orthologs #499. Best score 131 bits
Score difference with first non-orthologous sequence - P.jiroveci:131 P.knowlesi:131

L0PCX3              	100.00%		B3LDC2              	100.00%
Bootstrap support for L0PCX3 as seed ortholog is 100%.
Bootstrap support for B3LDC2 as seed ortholog is 100%.

Group of orthologs #500. Best score 130 bits
Score difference with first non-orthologous sequence - P.jiroveci:130 P.knowlesi:130

L0PC96              	100.00%		B3LC67              	100.00%
Bootstrap support for L0PC96 as seed ortholog is 100%.
Bootstrap support for B3LC67 as seed ortholog is 100%.

Group of orthologs #501. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:129 P.knowlesi:129

L0PCB3              	100.00%		B3L2N5              	100.00%
Bootstrap support for L0PCB3 as seed ortholog is 100%.
Bootstrap support for B3L2N5 as seed ortholog is 100%.

Group of orthologs #502. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:129 P.knowlesi:129

L0P8C9              	100.00%		B3LBS5              	100.00%
Bootstrap support for L0P8C9 as seed ortholog is 100%.
Bootstrap support for B3LBS5 as seed ortholog is 100%.

Group of orthologs #503. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:129 P.knowlesi:129

L0PG68              	100.00%		B3L712              	100.00%
Bootstrap support for L0PG68 as seed ortholog is 100%.
Bootstrap support for B3L712 as seed ortholog is 100%.

Group of orthologs #504. Best score 129 bits
Score difference with first non-orthologous sequence - P.jiroveci:129 P.knowlesi:129

L0PHN0              	100.00%		B3LD31              	100.00%
Bootstrap support for L0PHN0 as seed ortholog is 100%.
Bootstrap support for B3LD31 as seed ortholog is 100%.

Group of orthologs #505. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:128

L0P9F7              	100.00%		B3L8K9              	100.00%
L0PGP0              	85.69%		
Bootstrap support for L0P9F7 as seed ortholog is 100%.
Bootstrap support for B3L8K9 as seed ortholog is 100%.

Group of orthologs #506. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:128

L0PBI9              	100.00%		B3L1V2              	100.00%
Bootstrap support for L0PBI9 as seed ortholog is 100%.
Bootstrap support for B3L1V2 as seed ortholog is 100%.

Group of orthologs #507. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:128

L0PGK0              	100.00%		B3L1E5              	100.00%
Bootstrap support for L0PGK0 as seed ortholog is 100%.
Bootstrap support for B3L1E5 as seed ortholog is 100%.

Group of orthologs #508. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:128

L0PEH9              	100.00%		B3L6X6              	100.00%
Bootstrap support for L0PEH9 as seed ortholog is 100%.
Bootstrap support for B3L6X6 as seed ortholog is 100%.

Group of orthologs #509. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:128

L0PFY9              	100.00%		B3L8R9              	100.00%
Bootstrap support for L0PFY9 as seed ortholog is 100%.
Bootstrap support for B3L8R9 as seed ortholog is 100%.

Group of orthologs #510. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:128

L0PG54              	100.00%		B3L994              	100.00%
Bootstrap support for L0PG54 as seed ortholog is 100%.
Bootstrap support for B3L994 as seed ortholog is 100%.

Group of orthologs #511. Best score 128 bits
Score difference with first non-orthologous sequence - P.jiroveci:128 P.knowlesi:25

L0PFW9              	100.00%		B3LBN1              	100.00%
Bootstrap support for L0PFW9 as seed ortholog is 100%.
Bootstrap support for B3LBN1 as seed ortholog is 73%.
Alternative seed ortholog is B3L324 (25 bits away from this cluster)

Group of orthologs #512. Best score 127 bits
Score difference with first non-orthologous sequence - P.jiroveci:127 P.knowlesi:127

L0PAB8              	100.00%		B3L782              	100.00%
Bootstrap support for L0PAB8 as seed ortholog is 100%.
Bootstrap support for B3L782 as seed ortholog is 100%.

Group of orthologs #513. Best score 126 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 P.knowlesi:126

L0PAB3              	100.00%		B3LBX5              	100.00%
Bootstrap support for L0PAB3 as seed ortholog is 100%.
Bootstrap support for B3LBX5 as seed ortholog is 100%.

Group of orthologs #514. Best score 126 bits
Score difference with first non-orthologous sequence - P.jiroveci:126 P.knowlesi:126

L0PGP9              	100.00%		B3LB23              	100.00%
Bootstrap support for L0PGP9 as seed ortholog is 100%.
Bootstrap support for B3LB23 as seed ortholog is 100%.

Group of orthologs #515. Best score 125 bits
Score difference with first non-orthologous sequence - P.jiroveci:125 P.knowlesi:125

L0P8K4              	100.00%		B3L551              	100.00%
Bootstrap support for L0P8K4 as seed ortholog is 100%.
Bootstrap support for B3L551 as seed ortholog is 100%.

Group of orthologs #516. Best score 125 bits
Score difference with first non-orthologous sequence - P.jiroveci:125 P.knowlesi:125

L0PCN2              	100.00%		B3LBC8              	100.00%
Bootstrap support for L0PCN2 as seed ortholog is 100%.
Bootstrap support for B3LBC8 as seed ortholog is 100%.

Group of orthologs #517. Best score 125 bits
Score difference with first non-orthologous sequence - P.jiroveci:125 P.knowlesi:125

L0PD86              	100.00%		B3LCE1              	100.00%
Bootstrap support for L0PD86 as seed ortholog is 100%.
Bootstrap support for B3LCE1 as seed ortholog is 100%.

Group of orthologs #518. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 P.knowlesi:124

L0PGE3              	100.00%		B3LD51              	100.00%
L0PEY7              	57.60%		
Bootstrap support for L0PGE3 as seed ortholog is 100%.
Bootstrap support for B3LD51 as seed ortholog is 100%.

Group of orthologs #519. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 P.knowlesi:124

L0PBX2              	100.00%		B3L6Y7              	100.00%
Bootstrap support for L0PBX2 as seed ortholog is 100%.
Bootstrap support for B3L6Y7 as seed ortholog is 100%.

Group of orthologs #520. Best score 124 bits
Score difference with first non-orthologous sequence - P.jiroveci:124 P.knowlesi:124

L0PFR9              	100.00%		B3L6C0              	100.00%
Bootstrap support for L0PFR9 as seed ortholog is 100%.
Bootstrap support for B3L6C0 as seed ortholog is 100%.

Group of orthologs #521. Best score 123 bits
Score difference with first non-orthologous sequence - P.jiroveci:123 P.knowlesi:123

L0PE97              	100.00%		B3L2K1              	100.00%
Bootstrap support for L0PE97 as seed ortholog is 100%.
Bootstrap support for B3L2K1 as seed ortholog is 100%.

Group of orthologs #522. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 P.knowlesi:122

L0P9X0              	100.00%		B3L6G0              	100.00%
Bootstrap support for L0P9X0 as seed ortholog is 100%.
Bootstrap support for B3L6G0 as seed ortholog is 100%.

Group of orthologs #523. Best score 122 bits
Score difference with first non-orthologous sequence - P.jiroveci:122 P.knowlesi:122

L0PFS1              	100.00%		B3L125              	100.00%
Bootstrap support for L0PFS1 as seed ortholog is 100%.
Bootstrap support for B3L125 as seed ortholog is 100%.

Group of orthologs #524. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 P.knowlesi:121

L0P7Z9              	100.00%		B3L236              	100.00%
Bootstrap support for L0P7Z9 as seed ortholog is 100%.
Bootstrap support for B3L236 as seed ortholog is 100%.

Group of orthologs #525. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:34 P.knowlesi:121

L0PAF0              	100.00%		B3L004              	100.00%
Bootstrap support for L0PAF0 as seed ortholog is 47%.
Alternative seed ortholog is L0PDG6 (34 bits away from this cluster)
Bootstrap support for B3L004 as seed ortholog is 100%.

Group of orthologs #526. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:121

L0P903              	100.00%		B3L2P6              	100.00%
Bootstrap support for L0P903 as seed ortholog is 97%.
Bootstrap support for B3L2P6 as seed ortholog is 100%.

Group of orthologs #527. Best score 121 bits
Score difference with first non-orthologous sequence - P.jiroveci:121 P.knowlesi:121

L0PFW4              	100.00%		B3L8S6              	100.00%
Bootstrap support for L0PFW4 as seed ortholog is 100%.
Bootstrap support for B3L8S6 as seed ortholog is 100%.

Group of orthologs #528. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 P.knowlesi:120

L0P7C8              	100.00%		B3L211              	100.00%
Bootstrap support for L0P7C8 as seed ortholog is 100%.
Bootstrap support for B3L211 as seed ortholog is 100%.

Group of orthologs #529. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 P.knowlesi:120

L0P9U1              	100.00%		B3L267              	100.00%
Bootstrap support for L0P9U1 as seed ortholog is 100%.
Bootstrap support for B3L267 as seed ortholog is 100%.

Group of orthologs #530. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:40 P.knowlesi:71

L0PDE1              	100.00%		B3L152              	100.00%
Bootstrap support for L0PDE1 as seed ortholog is 87%.
Bootstrap support for B3L152 as seed ortholog is 98%.

Group of orthologs #531. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 P.knowlesi:120

L0PCM5              	100.00%		B3L3N3              	100.00%
Bootstrap support for L0PCM5 as seed ortholog is 100%.
Bootstrap support for B3L3N3 as seed ortholog is 100%.

Group of orthologs #532. Best score 120 bits
Score difference with first non-orthologous sequence - P.jiroveci:120 P.knowlesi:120

L0PEG0              	100.00%		B3L671              	100.00%
Bootstrap support for L0PEG0 as seed ortholog is 100%.
Bootstrap support for B3L671 as seed ortholog is 100%.

Group of orthologs #533. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 P.knowlesi:119

L0P9T5              	100.00%		B3KZ70              	100.00%
Bootstrap support for L0P9T5 as seed ortholog is 100%.
Bootstrap support for B3KZ70 as seed ortholog is 100%.

Group of orthologs #534. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 P.knowlesi:119

L0PAH2              	100.00%		B3KZ67              	100.00%
Bootstrap support for L0PAH2 as seed ortholog is 100%.
Bootstrap support for B3KZ67 as seed ortholog is 100%.

Group of orthologs #535. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 P.knowlesi:56

L0PBP9              	100.00%		B3LD50              	100.00%
Bootstrap support for L0PBP9 as seed ortholog is 100%.
Bootstrap support for B3LD50 as seed ortholog is 93%.

Group of orthologs #536. Best score 119 bits
Score difference with first non-orthologous sequence - P.jiroveci:119 P.knowlesi:119

L0PEG7              	100.00%		B3LBW0              	100.00%
Bootstrap support for L0PEG7 as seed ortholog is 100%.
Bootstrap support for B3LBW0 as seed ortholog is 100%.

Group of orthologs #537. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 P.knowlesi:118

L0PG10              	100.00%		B3L594              	100.00%
Bootstrap support for L0PG10 as seed ortholog is 100%.
Bootstrap support for B3L594 as seed ortholog is 100%.

Group of orthologs #538. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 P.knowlesi:118

L0PA33              	100.00%		B3LCN5              	100.00%
Bootstrap support for L0PA33 as seed ortholog is 100%.
Bootstrap support for B3LCN5 as seed ortholog is 100%.

Group of orthologs #539. Best score 118 bits
Score difference with first non-orthologous sequence - P.jiroveci:118 P.knowlesi:118

L0PD11              	100.00%		B3LA48              	100.00%
Bootstrap support for L0PD11 as seed ortholog is 100%.
Bootstrap support for B3LA48 as seed ortholog is 100%.

Group of orthologs #540. Best score 117 bits
Score difference with first non-orthologous sequence - P.jiroveci:117 P.knowlesi:117

L0PFI5              	100.00%		B3LAF4              	100.00%
Bootstrap support for L0PFI5 as seed ortholog is 100%.
Bootstrap support for B3LAF4 as seed ortholog is 100%.

Group of orthologs #541. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 P.knowlesi:26

L0PDE4              	100.00%		B3L973              	100.00%
Bootstrap support for L0PDE4 as seed ortholog is 100%.
Bootstrap support for B3L973 as seed ortholog is 80%.

Group of orthologs #542. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 P.knowlesi:116

L0PF71              	100.00%		B3L947              	100.00%
Bootstrap support for L0PF71 as seed ortholog is 100%.
Bootstrap support for B3L947 as seed ortholog is 100%.

Group of orthologs #543. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 P.knowlesi:49

L0PGW6              	100.00%		B3LAA5              	100.00%
Bootstrap support for L0PGW6 as seed ortholog is 100%.
Bootstrap support for B3LAA5 as seed ortholog is 96%.

Group of orthologs #544. Best score 116 bits
Score difference with first non-orthologous sequence - P.jiroveci:116 P.knowlesi:15

L0PEZ4              	100.00%		B3LD96              	100.00%
Bootstrap support for L0PEZ4 as seed ortholog is 100%.
Bootstrap support for B3LD96 as seed ortholog is 69%.
Alternative seed ortholog is B3L2K0 (15 bits away from this cluster)

Group of orthologs #545. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 P.knowlesi:115

L0PAD3              	100.00%		B3L3J9              	100.00%
Bootstrap support for L0PAD3 as seed ortholog is 100%.
Bootstrap support for B3L3J9 as seed ortholog is 100%.

Group of orthologs #546. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 P.knowlesi:115

L0P9M3              	100.00%		B3L6K9              	100.00%
Bootstrap support for L0P9M3 as seed ortholog is 100%.
Bootstrap support for B3L6K9 as seed ortholog is 100%.

Group of orthologs #547. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 P.knowlesi:115

L0PDX2              	100.00%		B3L899              	100.00%
Bootstrap support for L0PDX2 as seed ortholog is 100%.
Bootstrap support for B3L899 as seed ortholog is 100%.

Group of orthologs #548. Best score 115 bits
Score difference with first non-orthologous sequence - P.jiroveci:115 P.knowlesi:115

L0PBM3              	100.00%		B3LBM7              	100.00%
Bootstrap support for L0PBM3 as seed ortholog is 100%.
Bootstrap support for B3LBM7 as seed ortholog is 100%.

Group of orthologs #549. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 P.knowlesi:114

L0PEN4              	100.00%		B3L0V4              	100.00%
Bootstrap support for L0PEN4 as seed ortholog is 100%.
Bootstrap support for B3L0V4 as seed ortholog is 100%.

Group of orthologs #550. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 P.knowlesi:114

L0PG43              	100.00%		B3L1D4              	100.00%
Bootstrap support for L0PG43 as seed ortholog is 100%.
Bootstrap support for B3L1D4 as seed ortholog is 100%.

Group of orthologs #551. Best score 114 bits
Score difference with first non-orthologous sequence - P.jiroveci:114 P.knowlesi:114

L0PHP6              	100.00%		B3L6D8              	100.00%
Bootstrap support for L0PHP6 as seed ortholog is 100%.
Bootstrap support for B3L6D8 as seed ortholog is 100%.

Group of orthologs #552. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:7 P.knowlesi:22

L0P9H7              	100.00%		B3L603              	100.00%
L0PB47              	16.45%		B3L082              	11.09%
Bootstrap support for L0P9H7 as seed ortholog is 49%.
Alternative seed ortholog is L0PAQ4 (7 bits away from this cluster)
Bootstrap support for B3L603 as seed ortholog is 78%.

Group of orthologs #553. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:113 P.knowlesi:113

L0PCC0              	100.00%		B3L5Z9              	100.00%
Bootstrap support for L0PCC0 as seed ortholog is 100%.
Bootstrap support for B3L5Z9 as seed ortholog is 100%.

Group of orthologs #554. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:113 P.knowlesi:113

L0PFW7              	100.00%		B3L2Q6              	100.00%
Bootstrap support for L0PFW7 as seed ortholog is 100%.
Bootstrap support for B3L2Q6 as seed ortholog is 100%.

Group of orthologs #555. Best score 113 bits
Score difference with first non-orthologous sequence - P.jiroveci:113 P.knowlesi:25

L0PC80              	100.00%		B3L8Y8              	100.00%
Bootstrap support for L0PC80 as seed ortholog is 100%.
Bootstrap support for B3L8Y8 as seed ortholog is 80%.

Group of orthologs #556. Best score 112 bits
Score difference with first non-orthologous sequence - P.jiroveci:32 P.knowlesi:112

L0P944              	100.00%		B3L6G1              	100.00%
Bootstrap support for L0P944 as seed ortholog is 46%.
Alternative seed ortholog is L0P7Z7 (32 bits away from this cluster)
Bootstrap support for B3L6G1 as seed ortholog is 100%.

Group of orthologs #557. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0P9W6              	100.00%		B3L0G8              	100.00%
Bootstrap support for L0P9W6 as seed ortholog is 100%.
Bootstrap support for B3L0G8 as seed ortholog is 100%.

Group of orthologs #558. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0PFZ8              	100.00%		B3KYX5              	100.00%
Bootstrap support for L0PFZ8 as seed ortholog is 100%.
Bootstrap support for B3KYX5 as seed ortholog is 100%.

Group of orthologs #559. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0PCG3              	100.00%		B3L319              	100.00%
Bootstrap support for L0PCG3 as seed ortholog is 100%.
Bootstrap support for B3L319 as seed ortholog is 100%.

Group of orthologs #560. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0PE37              	100.00%		B3L1M2              	100.00%
Bootstrap support for L0PE37 as seed ortholog is 100%.
Bootstrap support for B3L1M2 as seed ortholog is 100%.

Group of orthologs #561. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0PFI7              	100.00%		B3L1T9              	100.00%
Bootstrap support for L0PFI7 as seed ortholog is 100%.
Bootstrap support for B3L1T9 as seed ortholog is 100%.

Group of orthologs #562. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0P6Z5              	100.00%		B3LC41              	100.00%
Bootstrap support for L0P6Z5 as seed ortholog is 100%.
Bootstrap support for B3LC41 as seed ortholog is 100%.

Group of orthologs #563. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0PEX7              	100.00%		B3LCM6              	100.00%
Bootstrap support for L0PEX7 as seed ortholog is 100%.
Bootstrap support for B3LCM6 as seed ortholog is 100%.

Group of orthologs #564. Best score 111 bits
Score difference with first non-orthologous sequence - P.jiroveci:111 P.knowlesi:111

L0PG39              	100.00%		B3LDF1              	100.00%
Bootstrap support for L0PG39 as seed ortholog is 100%.
Bootstrap support for B3LDF1 as seed ortholog is 100%.

Group of orthologs #565. Best score 110 bits
Score difference with first non-orthologous sequence - P.jiroveci:110 P.knowlesi:110

L0P8Q6              	100.00%		B3L3G8              	100.00%
Bootstrap support for L0P8Q6 as seed ortholog is 100%.
Bootstrap support for B3L3G8 as seed ortholog is 100%.

Group of orthologs #566. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:50

L0PDP9              	100.00%		B3KZI2              	100.00%
Bootstrap support for L0PDP9 as seed ortholog is 99%.
Bootstrap support for B3KZI2 as seed ortholog is 98%.

Group of orthologs #567. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 P.knowlesi:109

L0P957              	100.00%		B3L5Y8              	100.00%
Bootstrap support for L0P957 as seed ortholog is 100%.
Bootstrap support for B3L5Y8 as seed ortholog is 100%.

Group of orthologs #568. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 P.knowlesi:37

L0P9T6              	100.00%		B3LAB5              	100.00%
Bootstrap support for L0P9T6 as seed ortholog is 98%.
Bootstrap support for B3LAB5 as seed ortholog is 90%.

Group of orthologs #569. Best score 109 bits
Score difference with first non-orthologous sequence - P.jiroveci:109 P.knowlesi:109

L0PEY2              	100.00%		B3LA15              	100.00%
Bootstrap support for L0PEY2 as seed ortholog is 100%.
Bootstrap support for B3LA15 as seed ortholog is 100%.

Group of orthologs #570. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:11 P.knowlesi:11

L0PCW4              	100.00%		B3L807              	100.00%
L0PFK8              	23.92%		
Bootstrap support for L0PCW4 as seed ortholog is 57%.
Alternative seed ortholog is L0PCJ3 (11 bits away from this cluster)
Bootstrap support for B3L807 as seed ortholog is 65%.
Alternative seed ortholog is B3LD00 (11 bits away from this cluster)

Group of orthologs #571. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:108 P.knowlesi:108

L0P7Z1              	100.00%		B3LCA1              	100.00%
Bootstrap support for L0P7Z1 as seed ortholog is 100%.
Bootstrap support for B3LCA1 as seed ortholog is 100%.

Group of orthologs #572. Best score 108 bits
Score difference with first non-orthologous sequence - P.jiroveci:108 P.knowlesi:108

L0PDH1              	100.00%		B3L9F7              	100.00%
Bootstrap support for L0PDH1 as seed ortholog is 100%.
Bootstrap support for B3L9F7 as seed ortholog is 100%.

Group of orthologs #573. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 P.knowlesi:59

L0PAG4              	100.00%		B3L404              	100.00%
Bootstrap support for L0PAG4 as seed ortholog is 100%.
Bootstrap support for B3L404 as seed ortholog is 98%.

Group of orthologs #574. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 P.knowlesi:107

L0P9Y7              	100.00%		B3LB83              	100.00%
Bootstrap support for L0P9Y7 as seed ortholog is 100%.
Bootstrap support for B3LB83 as seed ortholog is 100%.

Group of orthologs #575. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 P.knowlesi:107

L0PG13              	100.00%		B3L5N0              	100.00%
Bootstrap support for L0PG13 as seed ortholog is 100%.
Bootstrap support for B3L5N0 as seed ortholog is 100%.

Group of orthologs #576. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 P.knowlesi:107

L0P9B4              	100.00%		B3LC88              	100.00%
Bootstrap support for L0P9B4 as seed ortholog is 100%.
Bootstrap support for B3LC88 as seed ortholog is 100%.

Group of orthologs #577. Best score 107 bits
Score difference with first non-orthologous sequence - P.jiroveci:107 P.knowlesi:107

L0PFZ3              	100.00%		B3LD34              	100.00%
Bootstrap support for L0PFZ3 as seed ortholog is 100%.
Bootstrap support for B3LD34 as seed ortholog is 100%.

Group of orthologs #578. Best score 106 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:106

L0P7X4              	100.00%		B3L5T1              	100.00%
L0P7L8              	9.16%		
Bootstrap support for L0P7X4 as seed ortholog is 100%.
Bootstrap support for B3L5T1 as seed ortholog is 100%.

Group of orthologs #579. Best score 106 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:106

L0P939              	100.00%		B3L5K5              	100.00%
L0PFG4              	88.24%		
Bootstrap support for L0P939 as seed ortholog is 100%.
Bootstrap support for B3L5K5 as seed ortholog is 100%.

Group of orthologs #580. Best score 106 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:106

L0PA30              	100.00%		B3L0T8              	100.00%
Bootstrap support for L0PA30 as seed ortholog is 100%.
Bootstrap support for B3L0T8 as seed ortholog is 100%.

Group of orthologs #581. Best score 106 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:29

L0P949              	100.00%		B3L399              	100.00%
Bootstrap support for L0P949 as seed ortholog is 100%.
Bootstrap support for B3L399 as seed ortholog is 97%.

Group of orthologs #582. Best score 106 bits
Score difference with first non-orthologous sequence - P.jiroveci:106 P.knowlesi:106

L0PG87              	100.00%		B3L470              	100.00%
Bootstrap support for L0PG87 as seed ortholog is 100%.
Bootstrap support for B3L470 as seed ortholog is 100%.

Group of orthologs #583. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 P.knowlesi:104

L0P870              	100.00%		B3L6J2              	100.00%
Bootstrap support for L0P870 as seed ortholog is 100%.
Bootstrap support for B3L6J2 as seed ortholog is 100%.

Group of orthologs #584. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 P.knowlesi:104

L0P7S0              	100.00%		B3L721              	100.00%
Bootstrap support for L0P7S0 as seed ortholog is 100%.
Bootstrap support for B3L721 as seed ortholog is 100%.

Group of orthologs #585. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 P.knowlesi:104

L0PE03              	100.00%		B3L4Z4              	100.00%
Bootstrap support for L0PE03 as seed ortholog is 100%.
Bootstrap support for B3L4Z4 as seed ortholog is 100%.

Group of orthologs #586. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 P.knowlesi:50

L0PCA7              	100.00%		B3L747              	100.00%
Bootstrap support for L0PCA7 as seed ortholog is 100%.
Bootstrap support for B3L747 as seed ortholog is 75%.

Group of orthologs #587. Best score 104 bits
Score difference with first non-orthologous sequence - P.jiroveci:104 P.knowlesi:104

L0PFV3              	100.00%		B3LB55              	100.00%
Bootstrap support for L0PFV3 as seed ortholog is 100%.
Bootstrap support for B3LB55 as seed ortholog is 100%.

Group of orthologs #588. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.knowlesi:103

L0P8R5              	100.00%		B3L5Y1              	100.00%
Bootstrap support for L0P8R5 as seed ortholog is 100%.
Bootstrap support for B3L5Y1 as seed ortholog is 100%.

Group of orthologs #589. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.knowlesi:103

L0PF38              	100.00%		B3L418              	100.00%
Bootstrap support for L0PF38 as seed ortholog is 100%.
Bootstrap support for B3L418 as seed ortholog is 100%.

Group of orthologs #590. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.knowlesi:103

L0PBD5              	100.00%		B3L8W9              	100.00%
Bootstrap support for L0PBD5 as seed ortholog is 100%.
Bootstrap support for B3L8W9 as seed ortholog is 100%.

Group of orthologs #591. Best score 103 bits
Score difference with first non-orthologous sequence - P.jiroveci:103 P.knowlesi:103

L0PAB2              	100.00%		B3LBJ2              	100.00%
Bootstrap support for L0PAB2 as seed ortholog is 100%.
Bootstrap support for B3LBJ2 as seed ortholog is 100%.

Group of orthologs #592. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.knowlesi:102

L0P8H6              	100.00%		B3L1P2              	100.00%
Bootstrap support for L0P8H6 as seed ortholog is 100%.
Bootstrap support for B3L1P2 as seed ortholog is 100%.

Group of orthologs #593. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.knowlesi:58

L0P938              	100.00%		B3L1H2              	100.00%
Bootstrap support for L0P938 as seed ortholog is 100%.
Bootstrap support for B3L1H2 as seed ortholog is 97%.

Group of orthologs #594. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.knowlesi:102

L0PDW9              	100.00%		B3L372              	100.00%
Bootstrap support for L0PDW9 as seed ortholog is 100%.
Bootstrap support for B3L372 as seed ortholog is 100%.

Group of orthologs #595. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.knowlesi:12

L0PF99              	100.00%		B3L532              	100.00%
Bootstrap support for L0PF99 as seed ortholog is 100%.
Bootstrap support for B3L532 as seed ortholog is 53%.
Alternative seed ortholog is B3L9W3 (12 bits away from this cluster)

Group of orthologs #596. Best score 102 bits
Score difference with first non-orthologous sequence - P.jiroveci:102 P.knowlesi:102

L0PEP9              	100.00%		B3LD77              	100.00%
Bootstrap support for L0PEP9 as seed ortholog is 100%.
Bootstrap support for B3LD77 as seed ortholog is 100%.

Group of orthologs #597. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.knowlesi:101

L0P9F5              	100.00%		B3L474              	100.00%
Bootstrap support for L0P9F5 as seed ortholog is 100%.
Bootstrap support for B3L474 as seed ortholog is 100%.

Group of orthologs #598. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.knowlesi:101

L0PEV4              	100.00%		B3L0W6              	100.00%
Bootstrap support for L0PEV4 as seed ortholog is 100%.
Bootstrap support for B3L0W6 as seed ortholog is 100%.

Group of orthologs #599. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.knowlesi:101

L0PA48              	100.00%		B3L7P4              	100.00%
Bootstrap support for L0PA48 as seed ortholog is 100%.
Bootstrap support for B3L7P4 as seed ortholog is 100%.

Group of orthologs #600. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.knowlesi:101

L0PFV4              	100.00%		B3L4F5              	100.00%
Bootstrap support for L0PFV4 as seed ortholog is 100%.
Bootstrap support for B3L4F5 as seed ortholog is 100%.

Group of orthologs #601. Best score 101 bits
Score difference with first non-orthologous sequence - P.jiroveci:101 P.knowlesi:1

L0PFK7              	100.00%		B3LAH2              	100.00%
Bootstrap support for L0PFK7 as seed ortholog is 100%.
Bootstrap support for B3LAH2 as seed ortholog is 50%.
Alternative seed ortholog is B3LBB9 (1 bits away from this cluster)

Group of orthologs #602. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 P.knowlesi:100

L0PA86              	100.00%		B3L3E3              	100.00%
Bootstrap support for L0PA86 as seed ortholog is 100%.
Bootstrap support for B3L3E3 as seed ortholog is 100%.

Group of orthologs #603. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 P.knowlesi:100

L0PAZ1              	100.00%		B3L4G7              	100.00%
Bootstrap support for L0PAZ1 as seed ortholog is 100%.
Bootstrap support for B3L4G7 as seed ortholog is 100%.

Group of orthologs #604. Best score 100 bits
Score difference with first non-orthologous sequence - P.jiroveci:100 P.knowlesi:100

L0PGY5              	100.00%		B3LAD9              	100.00%
Bootstrap support for L0PGY5 as seed ortholog is 100%.
Bootstrap support for B3LAD9 as seed ortholog is 100%.

Group of orthologs #605. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 P.knowlesi:99

L0P9Q8              	100.00%		B3L1K5              	100.00%
Bootstrap support for L0P9Q8 as seed ortholog is 100%.
Bootstrap support for B3L1K5 as seed ortholog is 100%.

Group of orthologs #606. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 P.knowlesi:99

L0PE13              	100.00%		B3L901              	100.00%
Bootstrap support for L0PE13 as seed ortholog is 100%.
Bootstrap support for B3L901 as seed ortholog is 100%.

Group of orthologs #607. Best score 99 bits
Score difference with first non-orthologous sequence - P.jiroveci:99 P.knowlesi:99

L0PG38              	100.00%		B3L8R0              	100.00%
Bootstrap support for L0PG38 as seed ortholog is 100%.
Bootstrap support for B3L8R0 as seed ortholog is 100%.

Group of orthologs #608. Best score 98 bits
Score difference with first non-orthologous sequence - P.jiroveci:98 P.knowlesi:98

L0P7T6              	100.00%		B3L3U3              	100.00%
L0PF25              	100.00%		
Bootstrap support for L0P7T6 as seed ortholog is 100%.
Bootstrap support for L0PF25 as seed ortholog is 100%.
Bootstrap support for B3L3U3 as seed ortholog is 100%.

Group of orthologs #609. Best score 98 bits
Score difference with first non-orthologous sequence - P.jiroveci:98 P.knowlesi:98

L0PCY9              	100.00%		B3L052              	100.00%
Bootstrap support for L0PCY9 as seed ortholog is 100%.
Bootstrap support for B3L052 as seed ortholog is 100%.

Group of orthologs #610. Best score 98 bits
Score difference with first non-orthologous sequence - P.jiroveci:98 P.knowlesi:98

L0PFC4              	100.00%		B3KZ84              	100.00%
Bootstrap support for L0PFC4 as seed ortholog is 100%.
Bootstrap support for B3KZ84 as seed ortholog is 100%.

Group of orthologs #611. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 P.knowlesi:97

L0PGB6              	100.00%		B3LD23              	100.00%
L0PG66              	86.10%		
Bootstrap support for L0PGB6 as seed ortholog is 100%.
Bootstrap support for B3LD23 as seed ortholog is 100%.

Group of orthologs #612. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 P.knowlesi:5

L0P9Z5              	100.00%		B3KZ61              	100.00%
Bootstrap support for L0P9Z5 as seed ortholog is 100%.
Bootstrap support for B3KZ61 as seed ortholog is 54%.
Alternative seed ortholog is B3L5I2 (5 bits away from this cluster)

Group of orthologs #613. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:30 P.knowlesi:34

L0PAZ8              	100.00%		B3KZB4              	100.00%
Bootstrap support for L0PAZ8 as seed ortholog is 85%.
Bootstrap support for B3KZB4 as seed ortholog is 88%.

Group of orthologs #614. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 P.knowlesi:97

L0P9A1              	100.00%		B3L662              	100.00%
Bootstrap support for L0P9A1 as seed ortholog is 100%.
Bootstrap support for B3L662 as seed ortholog is 100%.

Group of orthologs #615. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 P.knowlesi:97

L0PA27              	100.00%		B3L720              	100.00%
Bootstrap support for L0PA27 as seed ortholog is 100%.
Bootstrap support for B3L720 as seed ortholog is 100%.

Group of orthologs #616. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 P.knowlesi:97

L0P9Z6              	100.00%		B3L891              	100.00%
Bootstrap support for L0P9Z6 as seed ortholog is 100%.
Bootstrap support for B3L891 as seed ortholog is 100%.

Group of orthologs #617. Best score 97 bits
Score difference with first non-orthologous sequence - P.jiroveci:97 P.knowlesi:97

L0PFT5              	100.00%		B3LBN4              	100.00%
Bootstrap support for L0PFT5 as seed ortholog is 100%.
Bootstrap support for B3LBN4 as seed ortholog is 100%.

Group of orthologs #618. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.knowlesi:96

L0PFC0              	100.00%		B3KZH0              	100.00%
Bootstrap support for L0PFC0 as seed ortholog is 100%.
Bootstrap support for B3KZH0 as seed ortholog is 100%.

Group of orthologs #619. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.knowlesi:96

L0PBR1              	100.00%		B3L4A3              	100.00%
Bootstrap support for L0PBR1 as seed ortholog is 100%.
Bootstrap support for B3L4A3 as seed ortholog is 100%.

Group of orthologs #620. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.knowlesi:96

L0PD60              	100.00%		B3L321              	100.00%
Bootstrap support for L0PD60 as seed ortholog is 100%.
Bootstrap support for B3L321 as seed ortholog is 100%.

Group of orthologs #621. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.knowlesi:96

L0PCZ5              	100.00%		B3L4Q8              	100.00%
Bootstrap support for L0PCZ5 as seed ortholog is 100%.
Bootstrap support for B3L4Q8 as seed ortholog is 100%.

Group of orthologs #622. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.knowlesi:96

L0PAA1              	100.00%		B3L7J1              	100.00%
Bootstrap support for L0PAA1 as seed ortholog is 100%.
Bootstrap support for B3L7J1 as seed ortholog is 100%.

Group of orthologs #623. Best score 96 bits
Score difference with first non-orthologous sequence - P.jiroveci:96 P.knowlesi:96

L0PEZ8              	100.00%		B3L7C1              	100.00%
Bootstrap support for L0PEZ8 as seed ortholog is 100%.
Bootstrap support for B3L7C1 as seed ortholog is 100%.

Group of orthologs #624. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 P.knowlesi:13

L0P7V4              	100.00%		B3L238              	100.00%
Bootstrap support for L0P7V4 as seed ortholog is 100%.
Bootstrap support for B3L238 as seed ortholog is 66%.
Alternative seed ortholog is B3LCG5 (13 bits away from this cluster)

Group of orthologs #625. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 P.knowlesi:95

L0PCK2              	100.00%		B3L0C4              	100.00%
Bootstrap support for L0PCK2 as seed ortholog is 100%.
Bootstrap support for B3L0C4 as seed ortholog is 100%.

Group of orthologs #626. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 P.knowlesi:95

L0PCQ6              	100.00%		B3L6A1              	100.00%
Bootstrap support for L0PCQ6 as seed ortholog is 100%.
Bootstrap support for B3L6A1 as seed ortholog is 100%.

Group of orthologs #627. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:95 P.knowlesi:95

L0PD19              	100.00%		B3LB79              	100.00%
Bootstrap support for L0PD19 as seed ortholog is 100%.
Bootstrap support for B3LB79 as seed ortholog is 100%.

Group of orthologs #628. Best score 95 bits
Score difference with first non-orthologous sequence - P.jiroveci:33 P.knowlesi:18

L0PD63              	100.00%		B3LD95              	100.00%
Bootstrap support for L0PD63 as seed ortholog is 89%.
Bootstrap support for B3LD95 as seed ortholog is 77%.

Group of orthologs #629. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 P.knowlesi:94

L0P733              	100.00%		B3L0N9              	100.00%
Bootstrap support for L0P733 as seed ortholog is 100%.
Bootstrap support for B3L0N9 as seed ortholog is 100%.

Group of orthologs #630. Best score 94 bits
Score difference with first non-orthologous sequence - P.jiroveci:94 P.knowlesi:94

L0PBK0              	100.00%		B3KZ26              	100.00%
Bootstrap support for L0PBK0 as seed ortholog is 100%.
Bootstrap support for B3KZ26 as seed ortholog is 100%.

Group of orthologs #631. Best score 93 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 P.knowlesi:93

L0P7A1              	100.00%		B3L001              	100.00%
Bootstrap support for L0P7A1 as seed ortholog is 100%.
Bootstrap support for B3L001 as seed ortholog is 100%.

Group of orthologs #632. Best score 93 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 P.knowlesi:93

L0PAT8              	100.00%		B3LC17              	100.00%
Bootstrap support for L0PAT8 as seed ortholog is 100%.
Bootstrap support for B3LC17 as seed ortholog is 100%.

Group of orthologs #633. Best score 93 bits
Score difference with first non-orthologous sequence - P.jiroveci:93 P.knowlesi:93

L0PFP3              	100.00%		B3LD72              	100.00%
Bootstrap support for L0PFP3 as seed ortholog is 100%.
Bootstrap support for B3LD72 as seed ortholog is 100%.

Group of orthologs #634. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:30 P.knowlesi:92

L0PA51              	100.00%		B3L1E4              	100.00%
Bootstrap support for L0PA51 as seed ortholog is 90%.
Bootstrap support for B3L1E4 as seed ortholog is 100%.

Group of orthologs #635. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 P.knowlesi:92

L0PD00              	100.00%		B3L087              	100.00%
Bootstrap support for L0PD00 as seed ortholog is 100%.
Bootstrap support for B3L087 as seed ortholog is 100%.

Group of orthologs #636. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 P.knowlesi:92

L0PDX6              	100.00%		B3KZI5              	100.00%
Bootstrap support for L0PDX6 as seed ortholog is 100%.
Bootstrap support for B3KZI5 as seed ortholog is 100%.

Group of orthologs #637. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 P.knowlesi:92

L0PAN5              	100.00%		B3L2W0              	100.00%
Bootstrap support for L0PAN5 as seed ortholog is 100%.
Bootstrap support for B3L2W0 as seed ortholog is 100%.

Group of orthologs #638. Best score 92 bits
Score difference with first non-orthologous sequence - P.jiroveci:92 P.knowlesi:92

L0PGK7              	100.00%		B3L7N2              	100.00%
Bootstrap support for L0PGK7 as seed ortholog is 100%.
Bootstrap support for B3L7N2 as seed ortholog is 100%.

Group of orthologs #639. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:91

L0PC24              	100.00%		B3KZH5              	100.00%
Bootstrap support for L0PC24 as seed ortholog is 100%.
Bootstrap support for B3KZH5 as seed ortholog is 100%.

Group of orthologs #640. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:91

L0PE43              	100.00%		B3L0B4              	100.00%
Bootstrap support for L0PE43 as seed ortholog is 100%.
Bootstrap support for B3L0B4 as seed ortholog is 100%.

Group of orthologs #641. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:91

L0PB42              	100.00%		B3L6L2              	100.00%
Bootstrap support for L0PB42 as seed ortholog is 100%.
Bootstrap support for B3L6L2 as seed ortholog is 100%.

Group of orthologs #642. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:31

L0P9W7              	100.00%		B3L9J3              	100.00%
Bootstrap support for L0P9W7 as seed ortholog is 100%.
Bootstrap support for B3L9J3 as seed ortholog is 95%.

Group of orthologs #643. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:91

L0P7V8              	100.00%		B3LBK1              	100.00%
Bootstrap support for L0P7V8 as seed ortholog is 100%.
Bootstrap support for B3LBK1 as seed ortholog is 100%.

Group of orthologs #644. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:25

L0PBX9              	100.00%		B3LA85              	100.00%
Bootstrap support for L0PBX9 as seed ortholog is 100%.
Bootstrap support for B3LA85 as seed ortholog is 66%.
Alternative seed ortholog is B3L4E0 (25 bits away from this cluster)

Group of orthologs #645. Best score 91 bits
Score difference with first non-orthologous sequence - P.jiroveci:91 P.knowlesi:91

L0PCZ0              	100.00%		B3LBJ3              	100.00%
Bootstrap support for L0PCZ0 as seed ortholog is 100%.
Bootstrap support for B3LBJ3 as seed ortholog is 100%.

Group of orthologs #646. Best score 90 bits
Score difference with first non-orthologous sequence - P.jiroveci:90 P.knowlesi:90

L0PF58              	100.00%		B3L9U0              	100.00%
                    	       		B3LBA8              	85.52%
Bootstrap support for L0PF58 as seed ortholog is 100%.
Bootstrap support for B3L9U0 as seed ortholog is 100%.

Group of orthologs #647. Best score 90 bits
Score difference with first non-orthologous sequence - P.jiroveci:90 P.knowlesi:90

L0PDJ6              	100.00%		B3L5H7              	100.00%
Bootstrap support for L0PDJ6 as seed ortholog is 100%.
Bootstrap support for B3L5H7 as seed ortholog is 100%.

Group of orthologs #648. Best score 90 bits
Score difference with first non-orthologous sequence - P.jiroveci:90 P.knowlesi:90

L0PFZ7              	100.00%		B3L829              	100.00%
Bootstrap support for L0PFZ7 as seed ortholog is 100%.
Bootstrap support for B3L829 as seed ortholog is 100%.

Group of orthologs #649. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 P.knowlesi:89

L0PAJ0              	100.00%		B3L544              	100.00%
Bootstrap support for L0PAJ0 as seed ortholog is 100%.
Bootstrap support for B3L544 as seed ortholog is 100%.

Group of orthologs #650. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 P.knowlesi:89

L0P940              	100.00%		B3L6N2              	100.00%
Bootstrap support for L0P940 as seed ortholog is 100%.
Bootstrap support for B3L6N2 as seed ortholog is 100%.

Group of orthologs #651. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:44 P.knowlesi:23

L0P9Y3              	100.00%		B3LAK7              	100.00%
Bootstrap support for L0P9Y3 as seed ortholog is 95%.
Bootstrap support for B3LAK7 as seed ortholog is 78%.

Group of orthologs #652. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 P.knowlesi:89

L0PG04              	100.00%		B3L9H6              	100.00%
Bootstrap support for L0PG04 as seed ortholog is 100%.
Bootstrap support for B3L9H6 as seed ortholog is 100%.

Group of orthologs #653. Best score 89 bits
Score difference with first non-orthologous sequence - P.jiroveci:89 P.knowlesi:41

L0PD96              	100.00%		B3LCN8              	100.00%
Bootstrap support for L0PD96 as seed ortholog is 100%.
Bootstrap support for B3LCN8 as seed ortholog is 99%.

Group of orthologs #654. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:88 P.knowlesi:41

L0P9A7              	100.00%		B3L194              	100.00%
Bootstrap support for L0P9A7 as seed ortholog is 100%.
Bootstrap support for B3L194 as seed ortholog is 99%.

Group of orthologs #655. Best score 88 bits
Score difference with first non-orthologous sequence - P.jiroveci:17 P.knowlesi:88

L0PFG2              	100.00%		B3L9G0              	100.00%
Bootstrap support for L0PFG2 as seed ortholog is 75%.
Bootstrap support for B3L9G0 as seed ortholog is 100%.

Group of orthologs #656. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 P.knowlesi:10

L0PFZ6              	100.00%		B3L1B3              	100.00%
L0P7L2              	96.80%		
Bootstrap support for L0PFZ6 as seed ortholog is 100%.
Bootstrap support for B3L1B3 as seed ortholog is 56%.
Alternative seed ortholog is B3KZA0 (10 bits away from this cluster)

Group of orthologs #657. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 P.knowlesi:23

L0PDR6              	100.00%		B3L1F7              	100.00%
Bootstrap support for L0PDR6 as seed ortholog is 100%.
Bootstrap support for B3L1F7 as seed ortholog is 61%.
Alternative seed ortholog is B3KZW0 (23 bits away from this cluster)

Group of orthologs #658. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 P.knowlesi:35

L0PFA1              	100.00%		B3L576              	100.00%
Bootstrap support for L0PFA1 as seed ortholog is 100%.
Bootstrap support for B3L576 as seed ortholog is 99%.

Group of orthologs #659. Best score 87 bits
Score difference with first non-orthologous sequence - P.jiroveci:87 P.knowlesi:87

L0P9T3              	100.00%		B3LAP2              	100.00%
Bootstrap support for L0P9T3 as seed ortholog is 100%.
Bootstrap support for B3LAP2 as seed ortholog is 100%.

Group of orthologs #660. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 P.knowlesi:86

L0P8G3              	100.00%		B3KZA1              	100.00%
Bootstrap support for L0P8G3 as seed ortholog is 100%.
Bootstrap support for B3KZA1 as seed ortholog is 100%.

Group of orthologs #661. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 P.knowlesi:86

L0PA07              	100.00%		B3L106              	100.00%
Bootstrap support for L0PA07 as seed ortholog is 100%.
Bootstrap support for B3L106 as seed ortholog is 100%.

Group of orthologs #662. Best score 86 bits
Score difference with first non-orthologous sequence - P.jiroveci:86 P.knowlesi:86

L0PFF4              	100.00%		B3L198              	100.00%
Bootstrap support for L0PFF4 as seed ortholog is 100%.
Bootstrap support for B3L198 as seed ortholog is 100%.

Group of orthologs #663. Best score 85 bits
Score difference with first non-orthologous sequence - P.jiroveci:85 P.knowlesi:85

L0P8G4              	100.00%		B3L9F1              	100.00%
Bootstrap support for L0P8G4 as seed ortholog is 100%.
Bootstrap support for B3L9F1 as seed ortholog is 100%.

Group of orthologs #664. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 P.knowlesi:84

L0PDS3              	100.00%		B3L6U4              	100.00%
L0P8A5              	15.80%		
L0PBK7              	15.33%		
Bootstrap support for L0PDS3 as seed ortholog is 100%.
Bootstrap support for B3L6U4 as seed ortholog is 100%.

Group of orthologs #665. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 P.knowlesi:84

L0P8D6              	100.00%		B3L3L5              	100.00%
Bootstrap support for L0P8D6 as seed ortholog is 100%.
Bootstrap support for B3L3L5 as seed ortholog is 100%.

Group of orthologs #666. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 P.knowlesi:84

L0PCZ2              	100.00%		B3L174              	100.00%
Bootstrap support for L0PCZ2 as seed ortholog is 100%.
Bootstrap support for B3L174 as seed ortholog is 100%.

Group of orthologs #667. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 P.knowlesi:84

L0PAF2              	100.00%		B3L774              	100.00%
Bootstrap support for L0PAF2 as seed ortholog is 100%.
Bootstrap support for B3L774 as seed ortholog is 100%.

Group of orthologs #668. Best score 84 bits
Score difference with first non-orthologous sequence - P.jiroveci:84 P.knowlesi:84

L0PGR9              	100.00%		B3L766              	100.00%
Bootstrap support for L0PGR9 as seed ortholog is 100%.
Bootstrap support for B3L766 as seed ortholog is 100%.

Group of orthologs #669. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.knowlesi:83

L0P948              	100.00%		B3L1V8              	100.00%
Bootstrap support for L0P948 as seed ortholog is 100%.
Bootstrap support for B3L1V8 as seed ortholog is 100%.

Group of orthologs #670. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.knowlesi:83

L0P7U6              	100.00%		B3L3C2              	100.00%
Bootstrap support for L0P7U6 as seed ortholog is 100%.
Bootstrap support for B3L3C2 as seed ortholog is 100%.

Group of orthologs #671. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.knowlesi:83

L0PFK9              	100.00%		B3L8U3              	100.00%
Bootstrap support for L0PFK9 as seed ortholog is 100%.
Bootstrap support for B3L8U3 as seed ortholog is 100%.

Group of orthologs #672. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.knowlesi:83

L0PD77              	100.00%		B3LC58              	100.00%
Bootstrap support for L0PD77 as seed ortholog is 100%.
Bootstrap support for B3LC58 as seed ortholog is 100%.

Group of orthologs #673. Best score 83 bits
Score difference with first non-orthologous sequence - P.jiroveci:83 P.knowlesi:24

L0PH42              	100.00%		B3LBY5              	100.00%
Bootstrap support for L0PH42 as seed ortholog is 100%.
Bootstrap support for B3LBY5 as seed ortholog is 75%.

Group of orthologs #674. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 P.knowlesi:82

L0PBK8              	100.00%		B3L7P2              	100.00%
Bootstrap support for L0PBK8 as seed ortholog is 100%.
Bootstrap support for B3L7P2 as seed ortholog is 100%.

Group of orthologs #675. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 P.knowlesi:82

L0PBW9              	100.00%		B3L7H4              	100.00%
Bootstrap support for L0PBW9 as seed ortholog is 100%.
Bootstrap support for B3L7H4 as seed ortholog is 100%.

Group of orthologs #676. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 P.knowlesi:82

L0PB62              	100.00%		B3LCH0              	100.00%
Bootstrap support for L0PB62 as seed ortholog is 100%.
Bootstrap support for B3LCH0 as seed ortholog is 100%.

Group of orthologs #677. Best score 82 bits
Score difference with first non-orthologous sequence - P.jiroveci:82 P.knowlesi:82

L0PD91              	100.00%		B3LCE8              	100.00%
Bootstrap support for L0PD91 as seed ortholog is 100%.
Bootstrap support for B3LCE8 as seed ortholog is 100%.

Group of orthologs #678. Best score 81 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 P.knowlesi:81

L0P802              	100.00%		B3L728              	100.00%
                    	       		B3L159              	9.65%
Bootstrap support for L0P802 as seed ortholog is 100%.
Bootstrap support for B3L728 as seed ortholog is 100%.

Group of orthologs #679. Best score 81 bits
Score difference with first non-orthologous sequence - P.jiroveci:81 P.knowlesi:81

L0PGM1              	100.00%		B3LCF8              	100.00%
Bootstrap support for L0PGM1 as seed ortholog is 100%.
Bootstrap support for B3LCF8 as seed ortholog is 100%.

Group of orthologs #680. Best score 80 bits
Score difference with first non-orthologous sequence - P.jiroveci:80 P.knowlesi:80

L0P834              	100.00%		B3L105              	100.00%
Bootstrap support for L0P834 as seed ortholog is 100%.
Bootstrap support for B3L105 as seed ortholog is 100%.

Group of orthologs #681. Best score 80 bits
Score difference with first non-orthologous sequence - P.jiroveci:80 P.knowlesi:80

L0PG73              	100.00%		B3L4N3              	100.00%
Bootstrap support for L0PG73 as seed ortholog is 100%.
Bootstrap support for B3L4N3 as seed ortholog is 100%.

Group of orthologs #682. Best score 80 bits
Score difference with first non-orthologous sequence - P.jiroveci:80 P.knowlesi:9

L0P990              	100.00%		B3LD76              	100.00%
Bootstrap support for L0P990 as seed ortholog is 100%.
Bootstrap support for B3LD76 as seed ortholog is 72%.
Alternative seed ortholog is B3L9Z9 (9 bits away from this cluster)

Group of orthologs #683. Best score 80 bits
Score difference with first non-orthologous sequence - P.jiroveci:80 P.knowlesi:80

L0PG28              	100.00%		B3L7D3              	100.00%
Bootstrap support for L0PG28 as seed ortholog is 100%.
Bootstrap support for B3L7D3 as seed ortholog is 100%.

Group of orthologs #684. Best score 79 bits
Score difference with first non-orthologous sequence - P.jiroveci:79 P.knowlesi:79

L0PCE5              	100.00%		B3L5X9              	100.00%
L0PBD3              	5.40%		B3L241              	13.93%
                    	       		B3L7V6              	7.15%
Bootstrap support for L0PCE5 as seed ortholog is 100%.
Bootstrap support for B3L5X9 as seed ortholog is 100%.

Group of orthologs #685. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 P.knowlesi:78

L0PAM3              	100.00%		B3L233              	100.00%
Bootstrap support for L0PAM3 as seed ortholog is 100%.
Bootstrap support for B3L233 as seed ortholog is 100%.

Group of orthologs #686. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 P.knowlesi:78

L0P913              	100.00%		B3LCA4              	100.00%
Bootstrap support for L0P913 as seed ortholog is 100%.
Bootstrap support for B3LCA4 as seed ortholog is 100%.

Group of orthologs #687. Best score 78 bits
Score difference with first non-orthologous sequence - P.jiroveci:78 P.knowlesi:78

L0PDG0              	100.00%		B3LDB1              	100.00%
Bootstrap support for L0PDG0 as seed ortholog is 100%.
Bootstrap support for B3LDB1 as seed ortholog is 100%.

Group of orthologs #688. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.knowlesi:30

L0PEF8              	100.00%		B3L563              	100.00%
                    	       		B3LCD0              	8.68%
Bootstrap support for L0PEF8 as seed ortholog is 100%.
Bootstrap support for B3L563 as seed ortholog is 76%.

Group of orthologs #689. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.knowlesi:77

L0P7D7              	100.00%		B3L591              	100.00%
Bootstrap support for L0P7D7 as seed ortholog is 100%.
Bootstrap support for B3L591 as seed ortholog is 100%.

Group of orthologs #690. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.knowlesi:77

L0P8G7              	100.00%		B3L7V2              	100.00%
Bootstrap support for L0P8G7 as seed ortholog is 100%.
Bootstrap support for B3L7V2 as seed ortholog is 100%.

Group of orthologs #691. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.knowlesi:77

L0P9A3              	100.00%		B3L810              	100.00%
Bootstrap support for L0P9A3 as seed ortholog is 100%.
Bootstrap support for B3L810 as seed ortholog is 100%.

Group of orthologs #692. Best score 77 bits
Score difference with first non-orthologous sequence - P.jiroveci:77 P.knowlesi:77

L0PBB8              	100.00%		B3LCG3              	100.00%
Bootstrap support for L0PBB8 as seed ortholog is 100%.
Bootstrap support for B3LCG3 as seed ortholog is 100%.

Group of orthologs #693. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:76

L0PH67              	100.00%		B3L8S4              	100.00%
L0P9J6              	96.07%		
Bootstrap support for L0PH67 as seed ortholog is 100%.
Bootstrap support for B3L8S4 as seed ortholog is 100%.

Group of orthologs #694. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:76

L0PD07              	100.00%		B3L341              	100.00%
Bootstrap support for L0PD07 as seed ortholog is 100%.
Bootstrap support for B3L341 as seed ortholog is 100%.

Group of orthologs #695. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:76

L0PA97              	100.00%		B3L7G4              	100.00%
Bootstrap support for L0PA97 as seed ortholog is 100%.
Bootstrap support for B3L7G4 as seed ortholog is 100%.

Group of orthologs #696. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:76

L0P995              	100.00%		B3LCH2              	100.00%
Bootstrap support for L0P995 as seed ortholog is 100%.
Bootstrap support for B3LCH2 as seed ortholog is 100%.

Group of orthologs #697. Best score 76 bits
Score difference with first non-orthologous sequence - P.jiroveci:76 P.knowlesi:76

L0PA83              	100.00%		B3LBQ3              	100.00%
Bootstrap support for L0PA83 as seed ortholog is 100%.
Bootstrap support for B3LBQ3 as seed ortholog is 100%.

Group of orthologs #698. Best score 75 bits
Score difference with first non-orthologous sequence - P.jiroveci:75 P.knowlesi:75

L0PGM7              	100.00%		B3LCP3              	100.00%
L0PGY6              	95.17%		
Bootstrap support for L0PGM7 as seed ortholog is 100%.
Bootstrap support for B3LCP3 as seed ortholog is 100%.

Group of orthologs #699. Best score 75 bits
Score difference with first non-orthologous sequence - P.jiroveci:75 P.knowlesi:75

L0P8R9              	100.00%		B3LCD3              	100.00%
Bootstrap support for L0P8R9 as seed ortholog is 100%.
Bootstrap support for B3LCD3 as seed ortholog is 100%.

Group of orthologs #700. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 P.knowlesi:74

L0P9L0              	100.00%		B3L0T6              	100.00%
Bootstrap support for L0P9L0 as seed ortholog is 100%.
Bootstrap support for B3L0T6 as seed ortholog is 100%.

Group of orthologs #701. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 P.knowlesi:17

L0PAK0              	100.00%		B3L8I8              	100.00%
Bootstrap support for L0PAK0 as seed ortholog is 100%.
Bootstrap support for B3L8I8 as seed ortholog is 84%.

Group of orthologs #702. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:15 P.knowlesi:74

L0PCM4              	100.00%		B3L6N9              	100.00%
Bootstrap support for L0PCM4 as seed ortholog is 80%.
Bootstrap support for B3L6N9 as seed ortholog is 100%.

Group of orthologs #703. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 P.knowlesi:74

L0P9U0              	100.00%		B3LAG4              	100.00%
Bootstrap support for L0P9U0 as seed ortholog is 100%.
Bootstrap support for B3LAG4 as seed ortholog is 100%.

Group of orthologs #704. Best score 74 bits
Score difference with first non-orthologous sequence - P.jiroveci:74 P.knowlesi:74

L0PGC0              	100.00%		B3LDC6              	100.00%
Bootstrap support for L0PGC0 as seed ortholog is 100%.
Bootstrap support for B3LDC6 as seed ortholog is 100%.

Group of orthologs #705. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PF86              	100.00%		B3L882              	100.00%
L0PC10              	87.31%		
Bootstrap support for L0PF86 as seed ortholog is 100%.
Bootstrap support for B3L882 as seed ortholog is 100%.

Group of orthologs #706. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PC08              	100.00%		B3L433              	100.00%
Bootstrap support for L0PC08 as seed ortholog is 100%.
Bootstrap support for B3L433 as seed ortholog is 100%.

Group of orthologs #707. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PF16              	100.00%		B3L262              	100.00%
Bootstrap support for L0PF16 as seed ortholog is 100%.
Bootstrap support for B3L262 as seed ortholog is 100%.

Group of orthologs #708. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PEA9              	100.00%		B3L3K3              	100.00%
Bootstrap support for L0PEA9 as seed ortholog is 100%.
Bootstrap support for B3L3K3 as seed ortholog is 100%.

Group of orthologs #709. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PEF7              	100.00%		B3LAG6              	100.00%
Bootstrap support for L0PEF7 as seed ortholog is 100%.
Bootstrap support for B3LAG6 as seed ortholog is 100%.

Group of orthologs #710. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PFD1              	100.00%		B3LBX2              	100.00%
Bootstrap support for L0PFD1 as seed ortholog is 100%.
Bootstrap support for B3LBX2 as seed ortholog is 100%.

Group of orthologs #711. Best score 73 bits
Score difference with first non-orthologous sequence - P.jiroveci:73 P.knowlesi:73

L0PF53              	100.00%		B3LCW7              	100.00%
Bootstrap support for L0PF53 as seed ortholog is 100%.
Bootstrap support for B3LCW7 as seed ortholog is 100%.

Group of orthologs #712. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0PE61              	100.00%		B3L7M3              	100.00%
                    	       		B3L8Y6              	33.77%
                    	       		B3L8Y3              	30.61%
Bootstrap support for L0PE61 as seed ortholog is 100%.
Bootstrap support for B3L7M3 as seed ortholog is 100%.

Group of orthologs #713. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0PFK1              	100.00%		B3L0D3              	100.00%
Bootstrap support for L0PFK1 as seed ortholog is 100%.
Bootstrap support for B3L0D3 as seed ortholog is 100%.

Group of orthologs #714. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0PFY6              	100.00%		B3L191              	100.00%
Bootstrap support for L0PFY6 as seed ortholog is 100%.
Bootstrap support for B3L191 as seed ortholog is 100%.

Group of orthologs #715. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0P8U3              	100.00%		B3LAX3              	100.00%
Bootstrap support for L0P8U3 as seed ortholog is 100%.
Bootstrap support for B3LAX3 as seed ortholog is 100%.

Group of orthologs #716. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0PDJ4              	100.00%		B3L7J9              	100.00%
Bootstrap support for L0PDJ4 as seed ortholog is 100%.
Bootstrap support for B3L7J9 as seed ortholog is 100%.

Group of orthologs #717. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0PE76              	100.00%		B3L8R6              	100.00%
Bootstrap support for L0PE76 as seed ortholog is 100%.
Bootstrap support for B3L8R6 as seed ortholog is 100%.

Group of orthologs #718. Best score 72 bits
Score difference with first non-orthologous sequence - P.jiroveci:72 P.knowlesi:72

L0PCI9              	100.00%		B3LBR2              	100.00%
Bootstrap support for L0PCI9 as seed ortholog is 100%.
Bootstrap support for B3LBR2 as seed ortholog is 100%.

Group of orthologs #719. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0PCQ4              	100.00%		B3KZ52              	100.00%
Bootstrap support for L0PCQ4 as seed ortholog is 100%.
Bootstrap support for B3KZ52 as seed ortholog is 100%.

Group of orthologs #720. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0PBQ7              	100.00%		B3L0P7              	100.00%
Bootstrap support for L0PBQ7 as seed ortholog is 100%.
Bootstrap support for B3L0P7 as seed ortholog is 100%.

Group of orthologs #721. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0P724              	100.00%		B3L638              	100.00%
Bootstrap support for L0P724 as seed ortholog is 100%.
Bootstrap support for B3L638 as seed ortholog is 100%.

Group of orthologs #722. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0PCQ5              	100.00%		B3L168              	100.00%
Bootstrap support for L0PCQ5 as seed ortholog is 100%.
Bootstrap support for B3L168 as seed ortholog is 100%.

Group of orthologs #723. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0P9H0              	100.00%		B3L4I3              	100.00%
Bootstrap support for L0P9H0 as seed ortholog is 100%.
Bootstrap support for B3L4I3 as seed ortholog is 100%.

Group of orthologs #724. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0PGH5              	100.00%		B3L0G4              	100.00%
Bootstrap support for L0PGH5 as seed ortholog is 100%.
Bootstrap support for B3L0G4 as seed ortholog is 100%.

Group of orthologs #725. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0PEB8              	100.00%		B3L5Y6              	100.00%
Bootstrap support for L0PEB8 as seed ortholog is 100%.
Bootstrap support for B3L5Y6 as seed ortholog is 100%.

Group of orthologs #726. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:25

L0PDB2              	100.00%		B3L798              	100.00%
Bootstrap support for L0PDB2 as seed ortholog is 100%.
Bootstrap support for B3L798 as seed ortholog is 71%.
Alternative seed ortholog is B3L163 (25 bits away from this cluster)

Group of orthologs #727. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0P9U7              	100.00%		B3LBK8              	100.00%
Bootstrap support for L0P9U7 as seed ortholog is 100%.
Bootstrap support for B3LBK8 as seed ortholog is 100%.

Group of orthologs #728. Best score 71 bits
Score difference with first non-orthologous sequence - P.jiroveci:71 P.knowlesi:71

L0PBL2              	100.00%		B3LBV1              	100.00%
Bootstrap support for L0PBL2 as seed ortholog is 100%.
Bootstrap support for B3LBV1 as seed ortholog is 100%.

Group of orthologs #729. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.knowlesi:70

L0PCP9              	100.00%		B3L6E3              	100.00%
Bootstrap support for L0PCP9 as seed ortholog is 100%.
Bootstrap support for B3L6E3 as seed ortholog is 100%.

Group of orthologs #730. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.knowlesi:70

L0PCH6              	100.00%		B3L9C7              	100.00%
Bootstrap support for L0PCH6 as seed ortholog is 100%.
Bootstrap support for B3L9C7 as seed ortholog is 100%.

Group of orthologs #731. Best score 70 bits
Score difference with first non-orthologous sequence - P.jiroveci:70 P.knowlesi:23

L0PE14              	100.00%		B3LAK8              	100.00%
Bootstrap support for L0PE14 as seed ortholog is 100%.
Bootstrap support for B3LAK8 as seed ortholog is 91%.

Group of orthologs #732. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 P.knowlesi:69

L0PA37              	100.00%		B3L4D3              	100.00%
Bootstrap support for L0PA37 as seed ortholog is 100%.
Bootstrap support for B3L4D3 as seed ortholog is 100%.

Group of orthologs #733. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 P.knowlesi:69

L0PEB3              	100.00%		B3L917              	100.00%
Bootstrap support for L0PEB3 as seed ortholog is 100%.
Bootstrap support for B3L917 as seed ortholog is 100%.

Group of orthologs #734. Best score 69 bits
Score difference with first non-orthologous sequence - P.jiroveci:69 P.knowlesi:69

L0PEV3              	100.00%		B3L925              	100.00%
Bootstrap support for L0PEV3 as seed ortholog is 100%.
Bootstrap support for B3L925 as seed ortholog is 100%.

Group of orthologs #735. Best score 68 bits
Score difference with first non-orthologous sequence - P.jiroveci:68 P.knowlesi:68

L0PG84              	100.00%		B3L6U3              	100.00%
Bootstrap support for L0PG84 as seed ortholog is 100%.
Bootstrap support for B3L6U3 as seed ortholog is 100%.

Group of orthologs #736. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 P.knowlesi:67

L0PBQ3              	100.00%		B3L583              	100.00%
Bootstrap support for L0PBQ3 as seed ortholog is 100%.
Bootstrap support for B3L583 as seed ortholog is 100%.

Group of orthologs #737. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 P.knowlesi:67

L0PB34              	100.00%		B3LAD0              	100.00%
Bootstrap support for L0PB34 as seed ortholog is 100%.
Bootstrap support for B3LAD0 as seed ortholog is 100%.

Group of orthologs #738. Best score 67 bits
Score difference with first non-orthologous sequence - P.jiroveci:67 P.knowlesi:67

L0PFC3              	100.00%		B3L790              	100.00%
Bootstrap support for L0PFC3 as seed ortholog is 100%.
Bootstrap support for B3L790 as seed ortholog is 100%.

Group of orthologs #739. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.knowlesi:66

L0PBI4              	100.00%		B3LAN0              	100.00%
L0PCR9              	10.31%		
Bootstrap support for L0PBI4 as seed ortholog is 100%.
Bootstrap support for B3LAN0 as seed ortholog is 100%.

Group of orthologs #740. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:14 P.knowlesi:9

L0PBZ3              	100.00%		B3L0T1              	100.00%
Bootstrap support for L0PBZ3 as seed ortholog is 70%.
Alternative seed ortholog is L0PG46 (14 bits away from this cluster)
Bootstrap support for B3L0T1 as seed ortholog is 61%.
Alternative seed ortholog is B3L636 (9 bits away from this cluster)

Group of orthologs #741. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.knowlesi:66

L0PE48              	100.00%		B3L0W9              	100.00%
Bootstrap support for L0PE48 as seed ortholog is 100%.
Bootstrap support for B3L0W9 as seed ortholog is 100%.

Group of orthologs #742. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.knowlesi:66

L0P7G9              	100.00%		B3L8L0              	100.00%
Bootstrap support for L0P7G9 as seed ortholog is 100%.
Bootstrap support for B3L8L0 as seed ortholog is 100%.

Group of orthologs #743. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:26 P.knowlesi:22

L0P895              	100.00%		B3LD79              	100.00%
Bootstrap support for L0P895 as seed ortholog is 50%.
Alternative seed ortholog is L0PDA0 (26 bits away from this cluster)
Bootstrap support for B3LD79 as seed ortholog is 68%.
Alternative seed ortholog is B3L163 (22 bits away from this cluster)

Group of orthologs #744. Best score 66 bits
Score difference with first non-orthologous sequence - P.jiroveci:66 P.knowlesi:66

L0PG83              	100.00%		B3L762              	100.00%
Bootstrap support for L0PG83 as seed ortholog is 100%.
Bootstrap support for B3L762 as seed ortholog is 100%.

Group of orthologs #745. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:65

L0PED2              	100.00%		B3LAB6              	100.00%
                    	       		B3LBK3              	5.72%
Bootstrap support for L0PED2 as seed ortholog is 100%.
Bootstrap support for B3LAB6 as seed ortholog is 100%.

Group of orthologs #746. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:65

L0P8J6              	100.00%		B3L090              	100.00%
Bootstrap support for L0P8J6 as seed ortholog is 100%.
Bootstrap support for B3L090 as seed ortholog is 100%.

Group of orthologs #747. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:65

L0P9X6              	100.00%		B3L3A5              	100.00%
Bootstrap support for L0P9X6 as seed ortholog is 100%.
Bootstrap support for B3L3A5 as seed ortholog is 100%.

Group of orthologs #748. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:13

L0P9P5              	100.00%		B3L629              	100.00%
Bootstrap support for L0P9P5 as seed ortholog is 100%.
Bootstrap support for B3L629 as seed ortholog is 60%.
Alternative seed ortholog is B3KZU8 (13 bits away from this cluster)

Group of orthologs #749. Best score 65 bits
Score difference with first non-orthologous sequence - P.jiroveci:65 P.knowlesi:65

L0P893              	100.00%		B3LCE6              	100.00%
Bootstrap support for L0P893 as seed ortholog is 100%.
Bootstrap support for B3LCE6 as seed ortholog is 100%.

Group of orthologs #750. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.knowlesi:64

L0P7K1              	100.00%		B3L354              	100.00%
Bootstrap support for L0P7K1 as seed ortholog is 100%.
Bootstrap support for B3L354 as seed ortholog is 100%.

Group of orthologs #751. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.knowlesi:64

L0P9F1              	100.00%		B3L4P5              	100.00%
Bootstrap support for L0P9F1 as seed ortholog is 100%.
Bootstrap support for B3L4P5 as seed ortholog is 100%.

Group of orthologs #752. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.knowlesi:64

L0PCY1              	100.00%		B3L1I9              	100.00%
Bootstrap support for L0PCY1 as seed ortholog is 100%.
Bootstrap support for B3L1I9 as seed ortholog is 100%.

Group of orthologs #753. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:20 P.knowlesi:64

L0P881              	100.00%		B3L6A9              	100.00%
Bootstrap support for L0P881 as seed ortholog is 85%.
Bootstrap support for B3L6A9 as seed ortholog is 100%.

Group of orthologs #754. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.knowlesi:64

L0PCV9              	100.00%		B3LAR6              	100.00%
Bootstrap support for L0PCV9 as seed ortholog is 100%.
Bootstrap support for B3LAR6 as seed ortholog is 100%.

Group of orthologs #755. Best score 64 bits
Score difference with first non-orthologous sequence - P.jiroveci:64 P.knowlesi:64

L0PGP3              	100.00%		B3L8M6              	100.00%
Bootstrap support for L0PGP3 as seed ortholog is 100%.
Bootstrap support for B3L8M6 as seed ortholog is 100%.

Group of orthologs #756. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 P.knowlesi:63

L0PC94              	100.00%		B3KZM3              	100.00%
Bootstrap support for L0PC94 as seed ortholog is 100%.
Bootstrap support for B3KZM3 as seed ortholog is 100%.

Group of orthologs #757. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:1 P.knowlesi:63

L0PB17              	100.00%		B3L8J4              	100.00%
Bootstrap support for L0PB17 as seed ortholog is 45%.
Alternative seed ortholog is L0PD05 (1 bits away from this cluster)
Bootstrap support for B3L8J4 as seed ortholog is 100%.

Group of orthologs #758. Best score 63 bits
Score difference with first non-orthologous sequence - P.jiroveci:63 P.knowlesi:63

L0PGC4              	100.00%		B3L4W7              	100.00%
Bootstrap support for L0PGC4 as seed ortholog is 100%.
Bootstrap support for B3L4W7 as seed ortholog is 100%.

Group of orthologs #759. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:62

L0P8Q8              	100.00%		B3KZ63              	100.00%
Bootstrap support for L0P8Q8 as seed ortholog is 100%.
Bootstrap support for B3KZ63 as seed ortholog is 100%.

Group of orthologs #760. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:62

L0PAJ6              	100.00%		B3L2U1              	100.00%
Bootstrap support for L0PAJ6 as seed ortholog is 100%.
Bootstrap support for B3L2U1 as seed ortholog is 100%.

Group of orthologs #761. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:62

L0PDG4              	100.00%		B3L543              	100.00%
Bootstrap support for L0PDG4 as seed ortholog is 100%.
Bootstrap support for B3L543 as seed ortholog is 100%.

Group of orthologs #762. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:62

L0PCA9              	100.00%		B3L7P7              	100.00%
Bootstrap support for L0PCA9 as seed ortholog is 100%.
Bootstrap support for B3L7P7 as seed ortholog is 100%.

Group of orthologs #763. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:62

L0PFG0              	100.00%		B3L5X8              	100.00%
Bootstrap support for L0PFG0 as seed ortholog is 100%.
Bootstrap support for B3L5X8 as seed ortholog is 100%.

Group of orthologs #764. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:62 P.knowlesi:62

L0PC75              	100.00%		B3L9Q0              	100.00%
Bootstrap support for L0PC75 as seed ortholog is 100%.
Bootstrap support for B3L9Q0 as seed ortholog is 100%.

Group of orthologs #765. Best score 62 bits
Score difference with first non-orthologous sequence - P.jiroveci:8 P.knowlesi:62

L0PC81              	100.00%		B3LD56              	100.00%
Bootstrap support for L0PC81 as seed ortholog is 56%.
Alternative seed ortholog is L0PFZ5 (8 bits away from this cluster)
Bootstrap support for B3LD56 as seed ortholog is 100%.

Group of orthologs #766. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 P.knowlesi:16

L0P8Q3              	100.00%		B3L3P5              	100.00%
Bootstrap support for L0P8Q3 as seed ortholog is 100%.
Bootstrap support for B3L3P5 as seed ortholog is 80%.

Group of orthologs #767. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 P.knowlesi:61

L0PFT7              	100.00%		B3L0T5              	100.00%
Bootstrap support for L0PFT7 as seed ortholog is 100%.
Bootstrap support for B3L0T5 as seed ortholog is 100%.

Group of orthologs #768. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 P.knowlesi:61

L0P7T7              	100.00%		B3LBN2              	100.00%
Bootstrap support for L0P7T7 as seed ortholog is 100%.
Bootstrap support for B3LBN2 as seed ortholog is 100%.

Group of orthologs #769. Best score 61 bits
Score difference with first non-orthologous sequence - P.jiroveci:61 P.knowlesi:61

L0PG69              	100.00%		B3L7A4              	100.00%
Bootstrap support for L0PG69 as seed ortholog is 100%.
Bootstrap support for B3L7A4 as seed ortholog is 100%.

Group of orthologs #770. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 P.knowlesi:60

L0PD85              	100.00%		B3L3R0              	100.00%
L0PGV7              	63.80%		
Bootstrap support for L0PD85 as seed ortholog is 100%.
Bootstrap support for B3L3R0 as seed ortholog is 100%.

Group of orthologs #771. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 P.knowlesi:60

L0PAE2              	100.00%		B3L0Q3              	100.00%
Bootstrap support for L0PAE2 as seed ortholog is 100%.
Bootstrap support for B3L0Q3 as seed ortholog is 100%.

Group of orthologs #772. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:6 P.knowlesi:13

L0PB27              	100.00%		B3L0Z6              	100.00%
Bootstrap support for L0PB27 as seed ortholog is 68%.
Alternative seed ortholog is L0PGG4 (6 bits away from this cluster)
Bootstrap support for B3L0Z6 as seed ortholog is 89%.

Group of orthologs #773. Best score 60 bits
Score difference with first non-orthologous sequence - P.jiroveci:60 P.knowlesi:60

L0PAV4              	100.00%		B3LBE0              	100.00%
Bootstrap support for L0PAV4 as seed ortholog is 100%.
Bootstrap support for B3LBE0 as seed ortholog is 100%.

Group of orthologs #774. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.knowlesi:59

L0PAS9              	100.00%		B3L0R8              	100.00%
Bootstrap support for L0PAS9 as seed ortholog is 100%.
Bootstrap support for B3L0R8 as seed ortholog is 100%.

Group of orthologs #775. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.knowlesi:59

L0P7Y1              	100.00%		B3L9B6              	100.00%
Bootstrap support for L0P7Y1 as seed ortholog is 100%.
Bootstrap support for B3L9B6 as seed ortholog is 100%.

Group of orthologs #776. Best score 59 bits
Score difference with first non-orthologous sequence - P.jiroveci:59 P.knowlesi:59

L0PCX6              	100.00%		B3LA74              	100.00%
Bootstrap support for L0PCX6 as seed ortholog is 100%.
Bootstrap support for B3LA74 as seed ortholog is 100%.

Group of orthologs #777. Best score 58 bits
Score difference with first non-orthologous sequence - P.jiroveci:58 P.knowlesi:58

L0PFJ1              	100.00%		B3L4J6              	100.00%
Bootstrap support for L0PFJ1 as seed ortholog is 100%.
Bootstrap support for B3L4J6 as seed ortholog is 100%.

Group of orthologs #778. Best score 57 bits
Score difference with first non-orthologous sequence - P.jiroveci:57 P.knowlesi:57

L0P883              	100.00%		B3L0U6              	100.00%
Bootstrap support for L0P883 as seed ortholog is 100%.
Bootstrap support for B3L0U6 as seed ortholog is 100%.

Group of orthologs #779. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 P.knowlesi:56

L0PA03              	100.00%		B3L4L3              	100.00%
Bootstrap support for L0PA03 as seed ortholog is 100%.
Bootstrap support for B3L4L3 as seed ortholog is 100%.

Group of orthologs #780. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 P.knowlesi:56

L0PAP4              	100.00%		B3L4Z1              	100.00%
Bootstrap support for L0PAP4 as seed ortholog is 100%.
Bootstrap support for B3L4Z1 as seed ortholog is 100%.

Group of orthologs #781. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 P.knowlesi:56

L0P8Y9              	100.00%		B3LA19              	100.00%
Bootstrap support for L0P8Y9 as seed ortholog is 100%.
Bootstrap support for B3LA19 as seed ortholog is 100%.

Group of orthologs #782. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 P.knowlesi:56

L0P897              	100.00%		B3LCM5              	100.00%
Bootstrap support for L0P897 as seed ortholog is 100%.
Bootstrap support for B3LCM5 as seed ortholog is 100%.

Group of orthologs #783. Best score 56 bits
Score difference with first non-orthologous sequence - P.jiroveci:56 P.knowlesi:56

L0PEL9              	100.00%		B3L9C0              	100.00%
Bootstrap support for L0PEL9 as seed ortholog is 100%.
Bootstrap support for B3L9C0 as seed ortholog is 100%.

Group of orthologs #784. Best score 55 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 P.knowlesi:55

L0PAJ4              	100.00%		B3LB17              	100.00%
                    	       		B3L1C1              	37.58%
Bootstrap support for L0PAJ4 as seed ortholog is 100%.
Bootstrap support for B3LB17 as seed ortholog is 100%.

Group of orthologs #785. Best score 55 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 P.knowlesi:55

L0P7E6              	100.00%		B3L7T3              	100.00%
Bootstrap support for L0P7E6 as seed ortholog is 100%.
Bootstrap support for B3L7T3 as seed ortholog is 100%.

Group of orthologs #786. Best score 55 bits
Score difference with first non-orthologous sequence - P.jiroveci:55 P.knowlesi:55

L0PE35              	100.00%		B3L7C8              	100.00%
Bootstrap support for L0PE35 as seed ortholog is 100%.
Bootstrap support for B3L7C8 as seed ortholog is 100%.

Group of orthologs #787. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 P.knowlesi:54

L0PAP8              	100.00%		B3L4R5              	100.00%
Bootstrap support for L0PAP8 as seed ortholog is 100%.
Bootstrap support for B3L4R5 as seed ortholog is 100%.

Group of orthologs #788. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 P.knowlesi:54

L0PE66              	100.00%		B3L355              	100.00%
Bootstrap support for L0PE66 as seed ortholog is 100%.
Bootstrap support for B3L355 as seed ortholog is 100%.

Group of orthologs #789. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 P.knowlesi:54

L0PE38              	100.00%		B3L5Q8              	100.00%
Bootstrap support for L0PE38 as seed ortholog is 100%.
Bootstrap support for B3L5Q8 as seed ortholog is 100%.

Group of orthologs #790. Best score 54 bits
Score difference with first non-orthologous sequence - P.jiroveci:54 P.knowlesi:54

L0PE89              	100.00%		B3LCJ3              	100.00%
Bootstrap support for L0PE89 as seed ortholog is 100%.
Bootstrap support for B3LCJ3 as seed ortholog is 100%.

Group of orthologs #791. Best score 53 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 P.knowlesi:53

L0PAT4              	100.00%		B3L2U0              	100.00%
Bootstrap support for L0PAT4 as seed ortholog is 100%.
Bootstrap support for B3L2U0 as seed ortholog is 100%.

Group of orthologs #792. Best score 53 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 P.knowlesi:53

L0PGZ6              	100.00%		B3L0U7              	100.00%
Bootstrap support for L0PGZ6 as seed ortholog is 100%.
Bootstrap support for B3L0U7 as seed ortholog is 100%.

Group of orthologs #793. Best score 53 bits
Score difference with first non-orthologous sequence - P.jiroveci:53 P.knowlesi:53

L0PDF6              	100.00%		B3L730              	100.00%
Bootstrap support for L0PDF6 as seed ortholog is 100%.
Bootstrap support for B3L730 as seed ortholog is 100%.

Group of orthologs #794. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.knowlesi:50

L0PFU3              	100.00%		B3LAR8              	100.00%
                    	       		B3L713              	5.77%
Bootstrap support for L0PFU3 as seed ortholog is 100%.
Bootstrap support for B3LAR8 as seed ortholog is 100%.

Group of orthologs #795. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.knowlesi:50

L0PAI3              	100.00%		B3KZF6              	100.00%
Bootstrap support for L0PAI3 as seed ortholog is 100%.
Bootstrap support for B3KZF6 as seed ortholog is 100%.

Group of orthologs #796. Best score 50 bits
Score difference with first non-orthologous sequence - P.jiroveci:50 P.knowlesi:50

L0P7Q6              	100.00%		B3L9W2              	100.00%
Bootstrap support for L0P7Q6 as seed ortholog is 100%.
Bootstrap support for B3L9W2 as seed ortholog is 100%.

Group of orthologs #797. Best score 49 bits
Score difference with first non-orthologous sequence - P.jiroveci:49 P.knowlesi:49

L0PCI3              	100.00%		B3L6X2              	100.00%
Bootstrap support for L0PCI3 as seed ortholog is 100%.
Bootstrap support for B3L6X2 as seed ortholog is 100%.

Group of orthologs #798. Best score 48 bits
Score difference with first non-orthologous sequence - P.jiroveci:48 P.knowlesi:48

L0PG35              	100.00%		B3L6F0              	100.00%
Bootstrap support for L0PG35 as seed ortholog is 100%.
Bootstrap support for B3L6F0 as seed ortholog is 100%.

Group of orthologs #799. Best score 48 bits
Score difference with first non-orthologous sequence - P.jiroveci:48 P.knowlesi:48

L0PAG3              	100.00%		B3LCB4              	100.00%
Bootstrap support for L0PAG3 as seed ortholog is 100%.
Bootstrap support for B3LCB4 as seed ortholog is 100%.

Group of orthologs #800. Best score 47 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 P.knowlesi:47

L0PCZ4              	100.00%		B3L9M9              	100.00%
Bootstrap support for L0PCZ4 as seed ortholog is 100%.
Bootstrap support for B3L9M9 as seed ortholog is 100%.

Group of orthologs #801. Best score 47 bits
Score difference with first non-orthologous sequence - P.jiroveci:47 P.knowlesi:47

L0PF39              	100.00%		B3LAM5              	100.00%
Bootstrap support for L0PF39 as seed ortholog is 100%.
Bootstrap support for B3LAM5 as seed ortholog is 100%.

Group of orthologs #802. Best score 46 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 P.knowlesi:46

L0PFN1              	100.00%		B3L4Z5              	100.00%
Bootstrap support for L0PFN1 as seed ortholog is 100%.
Bootstrap support for B3L4Z5 as seed ortholog is 100%.

Group of orthologs #803. Best score 46 bits
Score difference with first non-orthologous sequence - P.jiroveci:46 P.knowlesi:46

L0PFM9              	100.00%		B3LCA9              	100.00%
Bootstrap support for L0PFM9 as seed ortholog is 100%.
Bootstrap support for B3LCA9 as seed ortholog is 100%.

Group of orthologs #804. Best score 45 bits
Score difference with first non-orthologous sequence - P.jiroveci:45 P.knowlesi:45

L0PD90              	100.00%		B3L379              	100.00%
Bootstrap support for L0PD90 as seed ortholog is 100%.
Bootstrap support for B3L379 as seed ortholog is 100%.

Group of orthologs #805. Best score 45 bits
Score difference with first non-orthologous sequence - P.jiroveci:45 P.knowlesi:45

L0PBS8              	100.00%		B3LB73              	100.00%
Bootstrap support for L0PBS8 as seed ortholog is 100%.
Bootstrap support for B3LB73 as seed ortholog is 100%.

Group of orthologs #806. Best score 43 bits
Score difference with first non-orthologous sequence - P.jiroveci:43 P.knowlesi:43

L0PE32              	100.00%		B3L4M2              	100.00%
Bootstrap support for L0PE32 as seed ortholog is 100%.
Bootstrap support for B3L4M2 as seed ortholog is 100%.

Group of orthologs #807. Best score 41 bits
Score difference with first non-orthologous sequence - P.jiroveci:41 P.knowlesi:41

L0PE69              	100.00%		B3L3P0              	100.00%
Bootstrap support for L0PE69 as seed ortholog is 100%.
Bootstrap support for B3L3P0 as seed ortholog is 100%.