###################################
871 groups of orthologs
992 in-paralogs from P.chabaudi
1070 in-paralogs from P.pallidum
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 1367 bits
Score difference with first non-orthologous sequence - P.chabaudi:1367 P.pallidum:1367

Q4Y4H6              	100.00%		D3BB35              	100.00%
Bootstrap support for Q4Y4H6 as seed ortholog is 100%.
Bootstrap support for D3BB35 as seed ortholog is 100%.

Group of orthologs #2. Best score 967 bits
Score difference with first non-orthologous sequence - P.chabaudi:967 P.pallidum:769

Q4XZM9              	100.00%		D3BM47              	100.00%
Bootstrap support for Q4XZM9 as seed ortholog is 100%.
Bootstrap support for D3BM47 as seed ortholog is 100%.

Group of orthologs #3. Best score 926 bits
Score difference with first non-orthologous sequence - P.chabaudi:926 P.pallidum:926

Q4XUB3              	100.00%		D3BVM0              	100.00%
                    	       		D3AVZ6              	13.06%
Bootstrap support for Q4XUB3 as seed ortholog is 100%.
Bootstrap support for D3BVM0 as seed ortholog is 100%.

Group of orthologs #4. Best score 800 bits
Score difference with first non-orthologous sequence - P.chabaudi:426 P.pallidum:172

Q4XZQ8              	100.00%		D3BEE3              	100.00%
Bootstrap support for Q4XZQ8 as seed ortholog is 100%.
Bootstrap support for D3BEE3 as seed ortholog is 99%.

Group of orthologs #5. Best score 770 bits
Score difference with first non-orthologous sequence - P.chabaudi:186 P.pallidum:77

Q4XZ91              	100.00%		D3BG38              	100.00%
Bootstrap support for Q4XZ91 as seed ortholog is 99%.
Bootstrap support for D3BG38 as seed ortholog is 93%.

Group of orthologs #6. Best score 736 bits
Score difference with first non-orthologous sequence - P.chabaudi:736 P.pallidum:736

Q4XE94              	100.00%		D3BPX3              	100.00%
Bootstrap support for Q4XE94 as seed ortholog is 100%.
Bootstrap support for D3BPX3 as seed ortholog is 100%.

Group of orthologs #7. Best score 713 bits
Score difference with first non-orthologous sequence - P.chabaudi:713 P.pallidum:590

Q4X2G0              	100.00%		D3B5K2              	100.00%
Bootstrap support for Q4X2G0 as seed ortholog is 100%.
Bootstrap support for D3B5K2 as seed ortholog is 100%.

Group of orthologs #8. Best score 656 bits
Score difference with first non-orthologous sequence - P.chabaudi:656 P.pallidum:315

Q4Y5M3              	100.00%		D3B6W7              	100.00%
Bootstrap support for Q4Y5M3 as seed ortholog is 100%.
Bootstrap support for D3B6W7 as seed ortholog is 100%.

Group of orthologs #9. Best score 651 bits
Score difference with first non-orthologous sequence - P.chabaudi:651 P.pallidum:651

Q4Y8Y8              	100.00%		D3B7U7              	100.00%
                    	       		D3BML1              	10.00%
Bootstrap support for Q4Y8Y8 as seed ortholog is 100%.
Bootstrap support for D3B7U7 as seed ortholog is 100%.

Group of orthologs #10. Best score 651 bits
Score difference with first non-orthologous sequence - P.chabaudi:306 P.pallidum:651

Q4Y1T5              	100.00%		D3B1K5              	100.00%
Bootstrap support for Q4Y1T5 as seed ortholog is 100%.
Bootstrap support for D3B1K5 as seed ortholog is 100%.

Group of orthologs #11. Best score 596 bits
Score difference with first non-orthologous sequence - P.chabaudi:596 P.pallidum:318

Q4Y279              	100.00%		D3BMZ2              	100.00%
Bootstrap support for Q4Y279 as seed ortholog is 100%.
Bootstrap support for D3BMZ2 as seed ortholog is 100%.

Group of orthologs #12. Best score 594 bits
Score difference with first non-orthologous sequence - P.chabaudi:431 P.pallidum:453

Q4Y6S3              	100.00%		D3BMN4              	100.00%
Bootstrap support for Q4Y6S3 as seed ortholog is 100%.
Bootstrap support for D3BMN4 as seed ortholog is 100%.

Group of orthologs #13. Best score 590 bits
Score difference with first non-orthologous sequence - P.chabaudi:518 P.pallidum:352

Q4X2J7              	100.00%		D3BPJ6              	100.00%
Bootstrap support for Q4X2J7 as seed ortholog is 100%.
Bootstrap support for D3BPJ6 as seed ortholog is 100%.

Group of orthologs #14. Best score 576 bits
Score difference with first non-orthologous sequence - P.chabaudi:576 P.pallidum:354

Q4XT93              	100.00%		D3B5E4              	100.00%
Bootstrap support for Q4XT93 as seed ortholog is 100%.
Bootstrap support for D3B5E4 as seed ortholog is 100%.

Group of orthologs #15. Best score 573 bits
Score difference with first non-orthologous sequence - P.chabaudi:573 P.pallidum:573

Q4XWB3              	100.00%		D3B015              	100.00%
Bootstrap support for Q4XWB3 as seed ortholog is 100%.
Bootstrap support for D3B015 as seed ortholog is 100%.

Group of orthologs #16. Best score 572 bits
Score difference with first non-orthologous sequence - P.chabaudi:572 P.pallidum:572

Q4XM47              	100.00%		D3AYV1              	100.00%
Bootstrap support for Q4XM47 as seed ortholog is 100%.
Bootstrap support for D3AYV1 as seed ortholog is 100%.

Group of orthologs #17. Best score 570 bits
Score difference with first non-orthologous sequence - P.chabaudi:570 P.pallidum:260

Q4XLC3              	100.00%		D3BPU8              	100.00%
Bootstrap support for Q4XLC3 as seed ortholog is 100%.
Bootstrap support for D3BPU8 as seed ortholog is 100%.

Group of orthologs #18. Best score 564 bits
Score difference with first non-orthologous sequence - P.chabaudi:564 P.pallidum:564

Q4XZ30              	100.00%		D3BSJ1              	100.00%
Bootstrap support for Q4XZ30 as seed ortholog is 100%.
Bootstrap support for D3BSJ1 as seed ortholog is 100%.

Group of orthologs #19. Best score 562 bits
Score difference with first non-orthologous sequence - P.chabaudi:562 P.pallidum:562

Q4XY88              	100.00%		D3BKQ8              	100.00%
Bootstrap support for Q4XY88 as seed ortholog is 100%.
Bootstrap support for D3BKQ8 as seed ortholog is 100%.

Group of orthologs #20. Best score 560 bits
Score difference with first non-orthologous sequence - P.chabaudi:560 P.pallidum:560

Q4XYQ6              	100.00%		D3BQY0              	100.00%
Bootstrap support for Q4XYQ6 as seed ortholog is 100%.
Bootstrap support for D3BQY0 as seed ortholog is 100%.

Group of orthologs #21. Best score 554 bits
Score difference with first non-orthologous sequence - P.chabaudi:388 P.pallidum:316

Q4Y1J6              	100.00%		D3BA83              	100.00%
Bootstrap support for Q4Y1J6 as seed ortholog is 100%.
Bootstrap support for D3BA83 as seed ortholog is 100%.

Group of orthologs #22. Best score 549 bits
Score difference with first non-orthologous sequence - P.chabaudi:433 P.pallidum:549

Q4XY83              	100.00%		D3BFQ1              	100.00%
Bootstrap support for Q4XY83 as seed ortholog is 100%.
Bootstrap support for D3BFQ1 as seed ortholog is 100%.

Group of orthologs #23. Best score 546 bits
Score difference with first non-orthologous sequence - P.chabaudi:546 P.pallidum:546

Q4XV32              	100.00%		D3BEZ7              	100.00%
Bootstrap support for Q4XV32 as seed ortholog is 100%.
Bootstrap support for D3BEZ7 as seed ortholog is 100%.

Group of orthologs #24. Best score 542 bits
Score difference with first non-orthologous sequence - P.chabaudi:542 P.pallidum:313

Q4Y155              	100.00%		D3B7Q7              	100.00%
Bootstrap support for Q4Y155 as seed ortholog is 100%.
Bootstrap support for D3B7Q7 as seed ortholog is 100%.

Group of orthologs #25. Best score 540 bits
Score difference with first non-orthologous sequence - P.chabaudi:540 P.pallidum:540

Q4X5R7              	100.00%		D3AZB7              	100.00%
Bootstrap support for Q4X5R7 as seed ortholog is 100%.
Bootstrap support for D3AZB7 as seed ortholog is 100%.

Group of orthologs #26. Best score 530 bits
Score difference with first non-orthologous sequence - P.chabaudi:530 P.pallidum:315

Q4XPC8              	100.00%		D3BFC6              	100.00%
Bootstrap support for Q4XPC8 as seed ortholog is 100%.
Bootstrap support for D3BFC6 as seed ortholog is 100%.

Group of orthologs #27. Best score 530 bits
Score difference with first non-orthologous sequence - P.chabaudi:530 P.pallidum:530

Q4Y880              	100.00%		D3BDZ2              	100.00%
Bootstrap support for Q4Y880 as seed ortholog is 100%.
Bootstrap support for D3BDZ2 as seed ortholog is 100%.

Group of orthologs #28. Best score 530 bits
Score difference with first non-orthologous sequence - P.chabaudi:530 P.pallidum:530

Q4Y0C3              	100.00%		D3BRS6              	100.00%
Bootstrap support for Q4Y0C3 as seed ortholog is 100%.
Bootstrap support for D3BRS6 as seed ortholog is 100%.

Group of orthologs #29. Best score 522 bits
Score difference with first non-orthologous sequence - P.chabaudi:522 P.pallidum:522

Q4Y1E6              	100.00%		D3B3X6              	100.00%
Bootstrap support for Q4Y1E6 as seed ortholog is 100%.
Bootstrap support for D3B3X6 as seed ortholog is 100%.

Group of orthologs #30. Best score 520 bits
Score difference with first non-orthologous sequence - P.chabaudi:520 P.pallidum:520

Q4XMG4              	100.00%		D3B474              	100.00%
Bootstrap support for Q4XMG4 as seed ortholog is 100%.
Bootstrap support for D3B474 as seed ortholog is 100%.

Group of orthologs #31. Best score 513 bits
Score difference with first non-orthologous sequence - P.chabaudi:238 P.pallidum:451

Q4XRU6              	100.00%		D3B3I9              	100.00%
Bootstrap support for Q4XRU6 as seed ortholog is 100%.
Bootstrap support for D3B3I9 as seed ortholog is 100%.

Group of orthologs #32. Best score 509 bits
Score difference with first non-orthologous sequence - P.chabaudi:509 P.pallidum:509

Q4Y4B0              	100.00%		D3BEQ3              	100.00%
                    	       		D3BK59              	11.50%
Bootstrap support for Q4Y4B0 as seed ortholog is 100%.
Bootstrap support for D3BEQ3 as seed ortholog is 100%.

Group of orthologs #33. Best score 506 bits
Score difference with first non-orthologous sequence - P.chabaudi:316 P.pallidum:173

Q4Y2D6              	100.00%		D3B3K7              	100.00%
Bootstrap support for Q4Y2D6 as seed ortholog is 100%.
Bootstrap support for D3B3K7 as seed ortholog is 100%.

Group of orthologs #34. Best score 505 bits
Score difference with first non-orthologous sequence - P.chabaudi:505 P.pallidum:307

Q4Y5M9              	100.00%		D3B0K9              	100.00%
Bootstrap support for Q4Y5M9 as seed ortholog is 100%.
Bootstrap support for D3B0K9 as seed ortholog is 100%.

Group of orthologs #35. Best score 500 bits
Score difference with first non-orthologous sequence - P.chabaudi:439 P.pallidum:146

Q4XQP7              	100.00%		D3AZ87              	100.00%
Bootstrap support for Q4XQP7 as seed ortholog is 100%.
Bootstrap support for D3AZ87 as seed ortholog is 99%.

Group of orthologs #36. Best score 496 bits
Score difference with first non-orthologous sequence - P.chabaudi:290 P.pallidum:264

Q4Y8N2              	100.00%		D3BEH4              	100.00%
Bootstrap support for Q4Y8N2 as seed ortholog is 100%.
Bootstrap support for D3BEH4 as seed ortholog is 100%.

Group of orthologs #37. Best score 495 bits
Score difference with first non-orthologous sequence - P.chabaudi:495 P.pallidum:141

Q4Y1K2              	100.00%		D3BQM3              	100.00%
Bootstrap support for Q4Y1K2 as seed ortholog is 100%.
Bootstrap support for D3BQM3 as seed ortholog is 99%.

Group of orthologs #38. Best score 492 bits
Score difference with first non-orthologous sequence - P.chabaudi:492 P.pallidum:424

Q4XW16              	100.00%		D3B6H8              	100.00%
Bootstrap support for Q4XW16 as seed ortholog is 100%.
Bootstrap support for D3B6H8 as seed ortholog is 100%.

Group of orthologs #39. Best score 489 bits
Score difference with first non-orthologous sequence - P.chabaudi:489 P.pallidum:30

Q4XYB8              	100.00%		D3BRU6              	100.00%
Q4X6S6              	10.12%		
Bootstrap support for Q4XYB8 as seed ortholog is 100%.
Bootstrap support for D3BRU6 as seed ortholog is 76%.

Group of orthologs #40. Best score 489 bits
Score difference with first non-orthologous sequence - P.chabaudi:489 P.pallidum:489

Q4XUX8              	100.00%		D3BMR9              	100.00%
Bootstrap support for Q4XUX8 as seed ortholog is 100%.
Bootstrap support for D3BMR9 as seed ortholog is 100%.

Group of orthologs #41. Best score 488 bits
Score difference with first non-orthologous sequence - P.chabaudi:330 P.pallidum:182

Q4XGH9              	100.00%		D3BIZ6              	100.00%
Bootstrap support for Q4XGH9 as seed ortholog is 100%.
Bootstrap support for D3BIZ6 as seed ortholog is 100%.

Group of orthologs #42. Best score 486 bits
Score difference with first non-orthologous sequence - P.chabaudi:279 P.pallidum:160

Q4XWN4              	100.00%		D3B6E1              	100.00%
Bootstrap support for Q4XWN4 as seed ortholog is 100%.
Bootstrap support for D3B6E1 as seed ortholog is 99%.

Group of orthologs #43. Best score 480 bits
Score difference with first non-orthologous sequence - P.chabaudi:480 P.pallidum:480

Q4X5F2              	100.00%		D3AZM1              	100.00%
Bootstrap support for Q4X5F2 as seed ortholog is 100%.
Bootstrap support for D3AZM1 as seed ortholog is 100%.

Group of orthologs #44. Best score 480 bits
Score difference with first non-orthologous sequence - P.chabaudi:304 P.pallidum:142

Q4XZH5              	100.00%		D3B6W8              	100.00%
Bootstrap support for Q4XZH5 as seed ortholog is 100%.
Bootstrap support for D3B6W8 as seed ortholog is 100%.

Group of orthologs #45. Best score 478 bits
Score difference with first non-orthologous sequence - P.chabaudi:478 P.pallidum:478

Q4Y192              	100.00%		D3BGD9              	100.00%
Bootstrap support for Q4Y192 as seed ortholog is 100%.
Bootstrap support for D3BGD9 as seed ortholog is 100%.

Group of orthologs #46. Best score 477 bits
Score difference with first non-orthologous sequence - P.chabaudi:477 P.pallidum:477

Q4XM14              	100.00%		D3BMT5              	100.00%
                    	       		D3AY33              	14.63%
Bootstrap support for Q4XM14 as seed ortholog is 100%.
Bootstrap support for D3BMT5 as seed ortholog is 100%.

Group of orthologs #47. Best score 469 bits
Score difference with first non-orthologous sequence - P.chabaudi:469 P.pallidum:469

Q4XW62              	100.00%		D3B3Y9              	100.00%
Q4XEU7              	37.19%		
Bootstrap support for Q4XW62 as seed ortholog is 100%.
Bootstrap support for D3B3Y9 as seed ortholog is 100%.

Group of orthologs #48. Best score 469 bits
Score difference with first non-orthologous sequence - P.chabaudi:469 P.pallidum:469

Q4X3C6              	100.00%		D3B427              	100.00%
Bootstrap support for Q4X3C6 as seed ortholog is 100%.
Bootstrap support for D3B427 as seed ortholog is 100%.

Group of orthologs #49. Best score 467 bits
Score difference with first non-orthologous sequence - P.chabaudi:467 P.pallidum:467

Q4XZU2              	100.00%		D3B9F6              	100.00%
Bootstrap support for Q4XZU2 as seed ortholog is 100%.
Bootstrap support for D3B9F6 as seed ortholog is 100%.

Group of orthologs #50. Best score 467 bits
Score difference with first non-orthologous sequence - P.chabaudi:467 P.pallidum:467

Q4XZN7              	100.00%		D3BQJ8              	100.00%
Bootstrap support for Q4XZN7 as seed ortholog is 100%.
Bootstrap support for D3BQJ8 as seed ortholog is 100%.

Group of orthologs #51. Best score 466 bits
Score difference with first non-orthologous sequence - P.chabaudi:466 P.pallidum:466

Q4Y8U6              	100.00%		D3BAK8              	100.00%
Bootstrap support for Q4Y8U6 as seed ortholog is 100%.
Bootstrap support for D3BAK8 as seed ortholog is 100%.

Group of orthologs #52. Best score 466 bits
Score difference with first non-orthologous sequence - P.chabaudi:466 P.pallidum:466

Q4Y881              	100.00%		D3BG39              	100.00%
Bootstrap support for Q4Y881 as seed ortholog is 100%.
Bootstrap support for D3BG39 as seed ortholog is 100%.

Group of orthologs #53. Best score 463 bits
Score difference with first non-orthologous sequence - P.chabaudi:463 P.pallidum:189

Q4Y517              	100.00%		D3B9H8              	100.00%
Bootstrap support for Q4Y517 as seed ortholog is 100%.
Bootstrap support for D3B9H8 as seed ortholog is 99%.

Group of orthologs #54. Best score 459 bits
Score difference with first non-orthologous sequence - P.chabaudi:459 P.pallidum:459

Q4XWN8              	100.00%		D3BPX4              	100.00%
                    	       		D3BBR2              	9.33%
Bootstrap support for Q4XWN8 as seed ortholog is 100%.
Bootstrap support for D3BPX4 as seed ortholog is 100%.

Group of orthologs #55. Best score 458 bits
Score difference with first non-orthologous sequence - P.chabaudi:458 P.pallidum:141

Q4XYW5              	100.00%		D3BBF7              	100.00%
Bootstrap support for Q4XYW5 as seed ortholog is 100%.
Bootstrap support for D3BBF7 as seed ortholog is 98%.

Group of orthologs #56. Best score 454 bits
Score difference with first non-orthologous sequence - P.chabaudi:454 P.pallidum:454

Q4Y492              	100.00%		D3BRX9              	100.00%
Bootstrap support for Q4Y492 as seed ortholog is 100%.
Bootstrap support for D3BRX9 as seed ortholog is 100%.

Group of orthologs #57. Best score 453 bits
Score difference with first non-orthologous sequence - P.chabaudi:453 P.pallidum:453

Q4XWY4              	100.00%		D3BIJ3              	100.00%
Bootstrap support for Q4XWY4 as seed ortholog is 100%.
Bootstrap support for D3BIJ3 as seed ortholog is 100%.

Group of orthologs #58. Best score 452 bits
Score difference with first non-orthologous sequence - P.chabaudi:452 P.pallidum:452

Q4XZ84              	100.00%		D3B3X9              	100.00%
Bootstrap support for Q4XZ84 as seed ortholog is 100%.
Bootstrap support for D3B3X9 as seed ortholog is 100%.

Group of orthologs #59. Best score 442 bits
Score difference with first non-orthologous sequence - P.chabaudi:442 P.pallidum:354

Q4X567              	100.00%		D3B7P5              	100.00%
Bootstrap support for Q4X567 as seed ortholog is 100%.
Bootstrap support for D3B7P5 as seed ortholog is 100%.

Group of orthologs #60. Best score 436 bits
Score difference with first non-orthologous sequence - P.chabaudi:319 P.pallidum:129

Q4XLW3              	100.00%		D3B127              	100.00%
Bootstrap support for Q4XLW3 as seed ortholog is 99%.
Bootstrap support for D3B127 as seed ortholog is 39%.
Alternative seed ortholog is D3B936 (129 bits away from this cluster)

Group of orthologs #61. Best score 434 bits
Score difference with first non-orthologous sequence - P.chabaudi:179 P.pallidum:18

Q4X3K2              	100.00%		D3B962              	100.00%
Bootstrap support for Q4X3K2 as seed ortholog is 100%.
Bootstrap support for D3B962 as seed ortholog is 70%.
Alternative seed ortholog is D3BSX0 (18 bits away from this cluster)

Group of orthologs #62. Best score 434 bits
Score difference with first non-orthologous sequence - P.chabaudi:434 P.pallidum:161

Q4XPJ8              	100.00%		D3B1P3              	100.00%
Bootstrap support for Q4XPJ8 as seed ortholog is 100%.
Bootstrap support for D3B1P3 as seed ortholog is 99%.

Group of orthologs #63. Best score 433 bits
Score difference with first non-orthologous sequence - P.chabaudi:433 P.pallidum:433

Q4XZZ5              	100.00%		D3BNY4              	100.00%
Bootstrap support for Q4XZZ5 as seed ortholog is 100%.
Bootstrap support for D3BNY4 as seed ortholog is 100%.

Group of orthologs #64. Best score 432 bits
Score difference with first non-orthologous sequence - P.chabaudi:432 P.pallidum:257

Q4XVZ3              	100.00%		D3B3N8              	100.00%
Bootstrap support for Q4XVZ3 as seed ortholog is 100%.
Bootstrap support for D3B3N8 as seed ortholog is 100%.

Group of orthologs #65. Best score 431 bits
Score difference with first non-orthologous sequence - P.chabaudi:431 P.pallidum:431

Q4X2E7              	100.00%		D3BLY9              	100.00%
Bootstrap support for Q4X2E7 as seed ortholog is 100%.
Bootstrap support for D3BLY9 as seed ortholog is 100%.

Group of orthologs #66. Best score 425 bits
Score difference with first non-orthologous sequence - P.chabaudi:269 P.pallidum:89

Q4Y4B1              	100.00%		D3BMU7              	100.00%
Bootstrap support for Q4Y4B1 as seed ortholog is 100%.
Bootstrap support for D3BMU7 as seed ortholog is 99%.

Group of orthologs #67. Best score 422 bits
Score difference with first non-orthologous sequence - P.chabaudi:263 P.pallidum:228

Q4Y248              	100.00%		D3AXU9              	100.00%
Bootstrap support for Q4Y248 as seed ortholog is 100%.
Bootstrap support for D3AXU9 as seed ortholog is 100%.

Group of orthologs #68. Best score 420 bits
Score difference with first non-orthologous sequence - P.chabaudi:327 P.pallidum:420

Q4XQK1              	100.00%		D3BUD7              	100.00%
                    	       		D3BKB8              	31.27%
Bootstrap support for Q4XQK1 as seed ortholog is 100%.
Bootstrap support for D3BUD7 as seed ortholog is 100%.

Group of orthologs #69. Best score 418 bits
Score difference with first non-orthologous sequence - P.chabaudi:418 P.pallidum:290

Q4XYN5              	100.00%		D3B0M9              	100.00%
Bootstrap support for Q4XYN5 as seed ortholog is 100%.
Bootstrap support for D3B0M9 as seed ortholog is 99%.

Group of orthologs #70. Best score 418 bits
Score difference with first non-orthologous sequence - P.chabaudi:418 P.pallidum:418

Q4Y1Q4              	100.00%		D3BAK5              	100.00%
Bootstrap support for Q4Y1Q4 as seed ortholog is 100%.
Bootstrap support for D3BAK5 as seed ortholog is 100%.

Group of orthologs #71. Best score 417 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.pallidum:166

Q4XEG0              	100.00%		D3B2M8              	100.00%
Bootstrap support for Q4XEG0 as seed ortholog is 99%.
Bootstrap support for D3B2M8 as seed ortholog is 100%.

Group of orthologs #72. Best score 415 bits
Score difference with first non-orthologous sequence - P.chabaudi:415 P.pallidum:415

Q4XT92              	100.00%		D3B8W3              	100.00%
Bootstrap support for Q4XT92 as seed ortholog is 100%.
Bootstrap support for D3B8W3 as seed ortholog is 100%.

Group of orthologs #73. Best score 414 bits
Score difference with first non-orthologous sequence - P.chabaudi:414 P.pallidum:414

Q4XYU6              	100.00%		D3B0M1              	100.00%
Bootstrap support for Q4XYU6 as seed ortholog is 100%.
Bootstrap support for D3B0M1 as seed ortholog is 100%.

Group of orthologs #74. Best score 414 bits
Score difference with first non-orthologous sequence - P.chabaudi:414 P.pallidum:414

Q4XU74              	100.00%		D3BVL5              	100.00%
Bootstrap support for Q4XU74 as seed ortholog is 100%.
Bootstrap support for D3BVL5 as seed ortholog is 100%.

Group of orthologs #75. Best score 411 bits
Score difference with first non-orthologous sequence - P.chabaudi:411 P.pallidum:213

Q4XWV5              	100.00%		D3B161              	100.00%
Bootstrap support for Q4XWV5 as seed ortholog is 100%.
Bootstrap support for D3B161 as seed ortholog is 100%.

Group of orthologs #76. Best score 411 bits
Score difference with first non-orthologous sequence - P.chabaudi:411 P.pallidum:411

Q4XQQ6              	100.00%		D3BUD8              	100.00%
Bootstrap support for Q4XQQ6 as seed ortholog is 100%.
Bootstrap support for D3BUD8 as seed ortholog is 100%.

Group of orthologs #77. Best score 410 bits
Score difference with first non-orthologous sequence - P.chabaudi:410 P.pallidum:410

Q4Y1X8              	100.00%		D3AZX3              	100.00%
Bootstrap support for Q4Y1X8 as seed ortholog is 100%.
Bootstrap support for D3AZX3 as seed ortholog is 100%.

Group of orthologs #78. Best score 410 bits
Score difference with first non-orthologous sequence - P.chabaudi:410 P.pallidum:410

Q4XXX5              	100.00%		D3BC39              	100.00%
Bootstrap support for Q4XXX5 as seed ortholog is 100%.
Bootstrap support for D3BC39 as seed ortholog is 100%.

Group of orthologs #79. Best score 405 bits
Score difference with first non-orthologous sequence - P.chabaudi:405 P.pallidum:190

Q4XLB7              	100.00%		D3AY64              	100.00%
Bootstrap support for Q4XLB7 as seed ortholog is 100%.
Bootstrap support for D3AY64 as seed ortholog is 100%.

Group of orthologs #80. Best score 405 bits
Score difference with first non-orthologous sequence - P.chabaudi:405 P.pallidum:339

Q4XLH2              	100.00%		D3B1F9              	100.00%
Bootstrap support for Q4XLH2 as seed ortholog is 100%.
Bootstrap support for D3B1F9 as seed ortholog is 100%.

Group of orthologs #81. Best score 405 bits
Score difference with first non-orthologous sequence - P.chabaudi:306 P.pallidum:177

Q4Y8F5              	100.00%		D3AZW1              	100.00%
Bootstrap support for Q4Y8F5 as seed ortholog is 100%.
Bootstrap support for D3AZW1 as seed ortholog is 100%.

Group of orthologs #82. Best score 403 bits
Score difference with first non-orthologous sequence - P.chabaudi:403 P.pallidum:403

Q4XW14              	100.00%		D3BKL2              	100.00%
Bootstrap support for Q4XW14 as seed ortholog is 100%.
Bootstrap support for D3BKL2 as seed ortholog is 100%.

Group of orthologs #83. Best score 402 bits
Score difference with first non-orthologous sequence - P.chabaudi:402 P.pallidum:336

Q4Y543              	100.00%		D3BFI2              	100.00%
Q4XF17              	30.98%		
Bootstrap support for Q4Y543 as seed ortholog is 100%.
Bootstrap support for D3BFI2 as seed ortholog is 100%.

Group of orthologs #84. Best score 398 bits
Score difference with first non-orthologous sequence - P.chabaudi:179 P.pallidum:192

Q4XYI1              	100.00%		D3BK58              	100.00%
Bootstrap support for Q4XYI1 as seed ortholog is 100%.
Bootstrap support for D3BK58 as seed ortholog is 100%.

Group of orthologs #85. Best score 397 bits
Score difference with first non-orthologous sequence - P.chabaudi:397 P.pallidum:397

Q4Y174              	100.00%		D3B6S4              	100.00%
Bootstrap support for Q4Y174 as seed ortholog is 100%.
Bootstrap support for D3B6S4 as seed ortholog is 100%.

Group of orthologs #86. Best score 393 bits
Score difference with first non-orthologous sequence - P.chabaudi:393 P.pallidum:393

Q4Y7S9              	100.00%		D3BP51              	100.00%
Bootstrap support for Q4Y7S9 as seed ortholog is 100%.
Bootstrap support for D3BP51 as seed ortholog is 100%.

Group of orthologs #87. Best score 392 bits
Score difference with first non-orthologous sequence - P.chabaudi:392 P.pallidum:23

Q4XVQ3              	100.00%		D3BAR8              	100.00%
Bootstrap support for Q4XVQ3 as seed ortholog is 100%.
Bootstrap support for D3BAR8 as seed ortholog is 68%.
Alternative seed ortholog is D3B4Y9 (23 bits away from this cluster)

Group of orthologs #88. Best score 391 bits
Score difference with first non-orthologous sequence - P.chabaudi:391 P.pallidum:391

Q4X751              	100.00%		D3BE82              	100.00%
                    	       		D3BMS6              	13.13%
Bootstrap support for Q4X751 as seed ortholog is 100%.
Bootstrap support for D3BE82 as seed ortholog is 100%.

Group of orthologs #89. Best score 387 bits
Score difference with first non-orthologous sequence - P.chabaudi:29 P.pallidum:387

Q4XWX7              	100.00%		D3BA71              	100.00%
Q4Y080              	8.08%		D3BK04              	24.11%
                    	       		D3BGI5              	20.19%
                    	       		D3BKB9              	18.21%
                    	       		D3BPD4              	16.62%
                    	       		D3B008              	12.59%
                    	       		D3BST1              	10.27%
Bootstrap support for Q4XWX7 as seed ortholog is 71%.
Alternative seed ortholog is Q4XU50 (29 bits away from this cluster)
Bootstrap support for D3BA71 as seed ortholog is 100%.

Group of orthologs #90. Best score 387 bits
Score difference with first non-orthologous sequence - P.chabaudi:387 P.pallidum:387

Q4XRL9              	100.00%		D3BPD1              	100.00%
Bootstrap support for Q4XRL9 as seed ortholog is 100%.
Bootstrap support for D3BPD1 as seed ortholog is 100%.

Group of orthologs #91. Best score 386 bits
Score difference with first non-orthologous sequence - P.chabaudi:212 P.pallidum:160

Q4Y3X7              	100.00%		D3BSG3              	100.00%
Bootstrap support for Q4Y3X7 as seed ortholog is 100%.
Bootstrap support for D3BSG3 as seed ortholog is 99%.

Group of orthologs #92. Best score 385 bits
Score difference with first non-orthologous sequence - P.chabaudi:385 P.pallidum:385

Q4XV03              	100.00%		D3BMV1              	100.00%
Bootstrap support for Q4XV03 as seed ortholog is 100%.
Bootstrap support for D3BMV1 as seed ortholog is 100%.

Group of orthologs #93. Best score 384 bits
Score difference with first non-orthologous sequence - P.chabaudi:155 P.pallidum:189

Q4XZI7              	100.00%		D3BNW4              	100.00%
Bootstrap support for Q4XZI7 as seed ortholog is 99%.
Bootstrap support for D3BNW4 as seed ortholog is 99%.

Group of orthologs #94. Best score 382 bits
Score difference with first non-orthologous sequence - P.chabaudi:382 P.pallidum:99

Q4XWL2              	100.00%		D3B2V3              	100.00%
Bootstrap support for Q4XWL2 as seed ortholog is 100%.
Bootstrap support for D3B2V3 as seed ortholog is 99%.

Group of orthologs #95. Best score 381 bits
Score difference with first non-orthologous sequence - P.chabaudi:381 P.pallidum:381

Q4X2S8              	100.00%		D3BTQ4              	100.00%
Bootstrap support for Q4X2S8 as seed ortholog is 100%.
Bootstrap support for D3BTQ4 as seed ortholog is 100%.

Group of orthologs #96. Best score 381 bits
Score difference with first non-orthologous sequence - P.chabaudi:381 P.pallidum:245

Q4XW78              	100.00%		D3B2K0              	100.00%
Bootstrap support for Q4XW78 as seed ortholog is 100%.
Bootstrap support for D3B2K0 as seed ortholog is 100%.

Group of orthologs #97. Best score 376 bits
Score difference with first non-orthologous sequence - P.chabaudi:376 P.pallidum:376

Q4XGH0              	100.00%		D3BQ08              	100.00%
Bootstrap support for Q4XGH0 as seed ortholog is 100%.
Bootstrap support for D3BQ08 as seed ortholog is 100%.

Group of orthologs #98. Best score 373 bits
Score difference with first non-orthologous sequence - P.chabaudi:202 P.pallidum:126

Q4Y8M5              	100.00%		D3B2D6              	100.00%
                    	       		D3AZ71              	8.81%
Bootstrap support for Q4Y8M5 as seed ortholog is 99%.
Bootstrap support for D3B2D6 as seed ortholog is 99%.

Group of orthologs #99. Best score 373 bits
Score difference with first non-orthologous sequence - P.chabaudi:18 P.pallidum:373

Q4XZ31              	100.00%		D3B0J2              	100.00%
Bootstrap support for Q4XZ31 as seed ortholog is 66%.
Alternative seed ortholog is Q4XX68 (18 bits away from this cluster)
Bootstrap support for D3B0J2 as seed ortholog is 100%.

Group of orthologs #100. Best score 372 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:197

Q4XRB1              	100.00%		D3BMB3              	100.00%
Bootstrap support for Q4XRB1 as seed ortholog is 99%.
Bootstrap support for D3BMB3 as seed ortholog is 100%.

Group of orthologs #101. Best score 371 bits
Score difference with first non-orthologous sequence - P.chabaudi:371 P.pallidum:371

Q4XT07              	100.00%		D3AY94              	100.00%
Bootstrap support for Q4XT07 as seed ortholog is 100%.
Bootstrap support for D3AY94 as seed ortholog is 100%.

Group of orthologs #102. Best score 368 bits
Score difference with first non-orthologous sequence - P.chabaudi:368 P.pallidum:368

Q4X2E2              	100.00%		D3B255              	100.00%
                    	       		D3B915              	23.92%
Bootstrap support for Q4X2E2 as seed ortholog is 100%.
Bootstrap support for D3B255 as seed ortholog is 100%.

Group of orthologs #103. Best score 367 bits
Score difference with first non-orthologous sequence - P.chabaudi:187 P.pallidum:289

Q4Y3A0              	100.00%		D3BI15              	100.00%
Bootstrap support for Q4Y3A0 as seed ortholog is 100%.
Bootstrap support for D3BI15 as seed ortholog is 100%.

Group of orthologs #104. Best score 366 bits
Score difference with first non-orthologous sequence - P.chabaudi:285 P.pallidum:366

Q4Y556              	100.00%		D3B2S5              	100.00%
                    	       		D3BUR5              	52.84%
Bootstrap support for Q4Y556 as seed ortholog is 100%.
Bootstrap support for D3B2S5 as seed ortholog is 100%.

Group of orthologs #105. Best score 364 bits
Score difference with first non-orthologous sequence - P.chabaudi:364 P.pallidum:293

Q4XMS7              	100.00%		D3AYY7              	100.00%
Bootstrap support for Q4XMS7 as seed ortholog is 100%.
Bootstrap support for D3AYY7 as seed ortholog is 100%.

Group of orthologs #106. Best score 364 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.pallidum:196

Q4XR25              	100.00%		D3BM62              	100.00%
Bootstrap support for Q4XR25 as seed ortholog is 100%.
Bootstrap support for D3BM62 as seed ortholog is 100%.

Group of orthologs #107. Best score 363 bits
Score difference with first non-orthologous sequence - P.chabaudi:363 P.pallidum:363

Q4Y6J7              	100.00%		D3BF15              	100.00%
Bootstrap support for Q4Y6J7 as seed ortholog is 100%.
Bootstrap support for D3BF15 as seed ortholog is 100%.

Group of orthologs #108. Best score 361 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.pallidum:186

Q4Y937              	100.00%		D3BIX9              	100.00%
                    	       		D3BKM7              	10.03%
                    	       		D3B9Y8              	9.05%
Bootstrap support for Q4Y937 as seed ortholog is 93%.
Bootstrap support for D3BIX9 as seed ortholog is 99%.

Group of orthologs #109. Best score 360 bits
Score difference with first non-orthologous sequence - P.chabaudi:360 P.pallidum:130

Q4XUF3              	100.00%		D3BPC8              	100.00%
Bootstrap support for Q4XUF3 as seed ortholog is 100%.
Bootstrap support for D3BPC8 as seed ortholog is 99%.

Group of orthologs #110. Best score 359 bits
Score difference with first non-orthologous sequence - P.chabaudi:359 P.pallidum:359

Q4XSW9              	100.00%		D3BCX3              	100.00%
Bootstrap support for Q4XSW9 as seed ortholog is 100%.
Bootstrap support for D3BCX3 as seed ortholog is 100%.

Group of orthologs #111. Best score 359 bits
Score difference with first non-orthologous sequence - P.chabaudi:125 P.pallidum:359

Q4XVK7              	100.00%		D3BNB9              	100.00%
Bootstrap support for Q4XVK7 as seed ortholog is 99%.
Bootstrap support for D3BNB9 as seed ortholog is 100%.

Group of orthologs #112. Best score 358 bits
Score difference with first non-orthologous sequence - P.chabaudi:30 P.pallidum:94

Q4Y1N6              	100.00%		D3BKP8              	100.00%
                    	       		D3BLI7              	14.33%
                    	       		D3B5H0              	8.53%
Bootstrap support for Q4Y1N6 as seed ortholog is 83%.
Bootstrap support for D3BKP8 as seed ortholog is 99%.

Group of orthologs #113. Best score 358 bits
Score difference with first non-orthologous sequence - P.chabaudi:358 P.pallidum:309

Q4XSB5              	100.00%		D3BG72              	100.00%
Bootstrap support for Q4XSB5 as seed ortholog is 100%.
Bootstrap support for D3BG72 as seed ortholog is 100%.

Group of orthologs #114. Best score 357 bits
Score difference with first non-orthologous sequence - P.chabaudi:357 P.pallidum:166

Q4Y991              	100.00%		D3BMP9              	100.00%
Bootstrap support for Q4Y991 as seed ortholog is 100%.
Bootstrap support for D3BMP9 as seed ortholog is 99%.

Group of orthologs #115. Best score 356 bits
Score difference with first non-orthologous sequence - P.chabaudi:356 P.pallidum:356

Q4Y7E4              	100.00%		D3BEC9              	100.00%
                    	       		D3B1Q4              	32.18%
Bootstrap support for Q4Y7E4 as seed ortholog is 100%.
Bootstrap support for D3BEC9 as seed ortholog is 100%.

Group of orthologs #116. Best score 354 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.pallidum:311

Q4XW83              	100.00%		D3B6H9              	100.00%
                    	       		D3B3G3              	25.79%
Bootstrap support for Q4XW83 as seed ortholog is 100%.
Bootstrap support for D3B6H9 as seed ortholog is 100%.

Group of orthologs #117. Best score 354 bits
Score difference with first non-orthologous sequence - P.chabaudi:354 P.pallidum:354

Q4Y0E2              	100.00%		D3BUL3              	100.00%
Q4X6R1              	22.44%		
Bootstrap support for Q4Y0E2 as seed ortholog is 100%.
Bootstrap support for D3BUL3 as seed ortholog is 100%.

Group of orthologs #118. Best score 354 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.pallidum:82

Q4XST8              	100.00%		D3BAL5              	100.00%
Bootstrap support for Q4XST8 as seed ortholog is 99%.
Bootstrap support for D3BAL5 as seed ortholog is 99%.

Group of orthologs #119. Best score 349 bits
Score difference with first non-orthologous sequence - P.chabaudi:349 P.pallidum:207

Q4Y570              	100.00%		D3B2T1              	100.00%
Bootstrap support for Q4Y570 as seed ortholog is 100%.
Bootstrap support for D3B2T1 as seed ortholog is 100%.

Group of orthologs #120. Best score 346 bits
Score difference with first non-orthologous sequence - P.chabaudi:140 P.pallidum:118

Q4Y1K1              	100.00%		D3AZS9              	100.00%
Bootstrap support for Q4Y1K1 as seed ortholog is 99%.
Bootstrap support for D3AZS9 as seed ortholog is 99%.

Group of orthologs #121. Best score 346 bits
Score difference with first non-orthologous sequence - P.chabaudi:270 P.pallidum:274

Q4Y7N7              	100.00%		D3BE83              	100.00%
Bootstrap support for Q4Y7N7 as seed ortholog is 100%.
Bootstrap support for D3BE83 as seed ortholog is 100%.

Group of orthologs #122. Best score 344 bits
Score difference with first non-orthologous sequence - P.chabaudi:344 P.pallidum:203

Q4X5E3              	100.00%		D3AZ75              	100.00%
Bootstrap support for Q4X5E3 as seed ortholog is 100%.
Bootstrap support for D3AZ75 as seed ortholog is 99%.

Group of orthologs #123. Best score 344 bits
Score difference with first non-orthologous sequence - P.chabaudi:344 P.pallidum:344

Q4XXD2              	100.00%		D3BBM5              	100.00%
Bootstrap support for Q4XXD2 as seed ortholog is 100%.
Bootstrap support for D3BBM5 as seed ortholog is 100%.

Group of orthologs #124. Best score 344 bits
Score difference with first non-orthologous sequence - P.chabaudi:344 P.pallidum:186

Q4XWC3              	100.00%		D3BFF8              	100.00%
Bootstrap support for Q4XWC3 as seed ortholog is 100%.
Bootstrap support for D3BFF8 as seed ortholog is 99%.

Group of orthologs #125. Best score 342 bits
Score difference with first non-orthologous sequence - P.chabaudi:342 P.pallidum:214

Q4Y443              	100.00%		D3BCV5              	100.00%
Q4XHL7              	15.22%		
Bootstrap support for Q4Y443 as seed ortholog is 100%.
Bootstrap support for D3BCV5 as seed ortholog is 100%.

Group of orthologs #126. Best score 342 bits
Score difference with first non-orthologous sequence - P.chabaudi:342 P.pallidum:342

Q4X4Y2              	100.00%		D3BPW8              	100.00%
Bootstrap support for Q4X4Y2 as seed ortholog is 100%.
Bootstrap support for D3BPW8 as seed ortholog is 100%.

Group of orthologs #127. Best score 342 bits
Score difference with first non-orthologous sequence - P.chabaudi:342 P.pallidum:342

Q4XWY1              	100.00%		D3BEX2              	100.00%
Bootstrap support for Q4XWY1 as seed ortholog is 100%.
Bootstrap support for D3BEX2 as seed ortholog is 100%.

Group of orthologs #128. Best score 337 bits
Score difference with first non-orthologous sequence - P.chabaudi:337 P.pallidum:337

Q4Y1Q7              	100.00%		D3BP70              	100.00%
Bootstrap support for Q4Y1Q7 as seed ortholog is 100%.
Bootstrap support for D3BP70 as seed ortholog is 100%.

Group of orthologs #129. Best score 336 bits
Score difference with first non-orthologous sequence - P.chabaudi:336 P.pallidum:142

Q4Y0L7              	100.00%		D3BNT7              	100.00%
Bootstrap support for Q4Y0L7 as seed ortholog is 100%.
Bootstrap support for D3BNT7 as seed ortholog is 99%.

Group of orthologs #130. Best score 335 bits
Score difference with first non-orthologous sequence - P.chabaudi:335 P.pallidum:285

Q4Y862              	100.00%		D3B0D6              	100.00%
Q4XHI1              	48.48%		
Bootstrap support for Q4Y862 as seed ortholog is 100%.
Bootstrap support for D3B0D6 as seed ortholog is 100%.

Group of orthologs #131. Best score 335 bits
Score difference with first non-orthologous sequence - P.chabaudi:229 P.pallidum:61

Q4XMV3              	100.00%		D3B9A5              	100.00%
Bootstrap support for Q4XMV3 as seed ortholog is 100%.
Bootstrap support for D3B9A5 as seed ortholog is 96%.

Group of orthologs #132. Best score 334 bits
Score difference with first non-orthologous sequence - P.chabaudi:334 P.pallidum:334

Q4XUM2              	100.00%		D3BJC7              	100.00%
Bootstrap support for Q4XUM2 as seed ortholog is 100%.
Bootstrap support for D3BJC7 as seed ortholog is 100%.

Group of orthologs #133. Best score 334 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.pallidum:258

Q4XZ78              	100.00%		D3BGX5              	100.00%
Bootstrap support for Q4XZ78 as seed ortholog is 100%.
Bootstrap support for D3BGX5 as seed ortholog is 100%.

Group of orthologs #134. Best score 334 bits
Score difference with first non-orthologous sequence - P.chabaudi:334 P.pallidum:334

Q4XXP8              	100.00%		D3BN56              	100.00%
Bootstrap support for Q4XXP8 as seed ortholog is 100%.
Bootstrap support for D3BN56 as seed ortholog is 100%.

Group of orthologs #135. Best score 332 bits
Score difference with first non-orthologous sequence - P.chabaudi:145 P.pallidum:100

Q4XLL6              	100.00%		D3BB29              	100.00%
Bootstrap support for Q4XLL6 as seed ortholog is 99%.
Bootstrap support for D3BB29 as seed ortholog is 98%.

Group of orthologs #136. Best score 331 bits
Score difference with first non-orthologous sequence - P.chabaudi:331 P.pallidum:331

Q4XTY0              	100.00%		D3BB83              	100.00%
                    	       		D3BI12              	6.45%
Bootstrap support for Q4XTY0 as seed ortholog is 100%.
Bootstrap support for D3BB83 as seed ortholog is 100%.

Group of orthologs #137. Best score 331 bits
Score difference with first non-orthologous sequence - P.chabaudi:331 P.pallidum:181

Q4Y1F9              	100.00%		D3BV44              	100.00%
Bootstrap support for Q4Y1F9 as seed ortholog is 100%.
Bootstrap support for D3BV44 as seed ortholog is 100%.

Group of orthologs #138. Best score 329 bits
Score difference with first non-orthologous sequence - P.chabaudi:329 P.pallidum:329

Q4XVH7              	100.00%		D3B350              	100.00%
Bootstrap support for Q4XVH7 as seed ortholog is 100%.
Bootstrap support for D3B350 as seed ortholog is 100%.

Group of orthologs #139. Best score 326 bits
Score difference with first non-orthologous sequence - P.chabaudi:172 P.pallidum:91

Q4Y5C0              	100.00%		D3BEH3              	100.00%
Bootstrap support for Q4Y5C0 as seed ortholog is 99%.
Bootstrap support for D3BEH3 as seed ortholog is 97%.

Group of orthologs #140. Best score 322 bits
Score difference with first non-orthologous sequence - P.chabaudi:322 P.pallidum:322

Q4XZM4              	100.00%		D3BAM6              	100.00%
Bootstrap support for Q4XZM4 as seed ortholog is 100%.
Bootstrap support for D3BAM6 as seed ortholog is 100%.

Group of orthologs #141. Best score 322 bits
Score difference with first non-orthologous sequence - P.chabaudi:322 P.pallidum:322

Q4XQ91              	100.00%		D3BQ86              	100.00%
Bootstrap support for Q4XQ91 as seed ortholog is 100%.
Bootstrap support for D3BQ86 as seed ortholog is 100%.

Group of orthologs #142. Best score 322 bits
Score difference with first non-orthologous sequence - P.chabaudi:322 P.pallidum:322

Q4XM21              	100.00%		D3BV45              	100.00%
Bootstrap support for Q4XM21 as seed ortholog is 100%.
Bootstrap support for D3BV45 as seed ortholog is 100%.

Group of orthologs #143. Best score 320 bits
Score difference with first non-orthologous sequence - P.chabaudi:320 P.pallidum:198

Q4Y2P2              	100.00%		D3B6D9              	100.00%
Bootstrap support for Q4Y2P2 as seed ortholog is 100%.
Bootstrap support for D3B6D9 as seed ortholog is 99%.

Group of orthologs #144. Best score 317 bits
Score difference with first non-orthologous sequence - P.chabaudi:317 P.pallidum:317

Q4Y535              	100.00%		D3BP87              	100.00%
                    	       		D3BH75              	62.50%
Bootstrap support for Q4Y535 as seed ortholog is 100%.
Bootstrap support for D3BP87 as seed ortholog is 100%.

Group of orthologs #145. Best score 317 bits
Score difference with first non-orthologous sequence - P.chabaudi:317 P.pallidum:171

Q4Y0Z2              	100.00%		D3B3V5              	100.00%
Bootstrap support for Q4Y0Z2 as seed ortholog is 100%.
Bootstrap support for D3B3V5 as seed ortholog is 99%.

Group of orthologs #146. Best score 317 bits
Score difference with first non-orthologous sequence - P.chabaudi:317 P.pallidum:131

Q4XXD5              	100.00%		D3BT28              	100.00%
Bootstrap support for Q4XXD5 as seed ortholog is 100%.
Bootstrap support for D3BT28 as seed ortholog is 99%.

Group of orthologs #147. Best score 316 bits
Score difference with first non-orthologous sequence - P.chabaudi:316 P.pallidum:90

Q4Y814              	100.00%		D3BEC2              	100.00%
Bootstrap support for Q4Y814 as seed ortholog is 100%.
Bootstrap support for D3BEC2 as seed ortholog is 98%.

Group of orthologs #148. Best score 314 bits
Score difference with first non-orthologous sequence - P.chabaudi:314 P.pallidum:314

Q4XLF8              	100.00%		D3BE62              	100.00%
Bootstrap support for Q4XLF8 as seed ortholog is 100%.
Bootstrap support for D3BE62 as seed ortholog is 100%.

Group of orthologs #149. Best score 314 bits
Score difference with first non-orthologous sequence - P.chabaudi:314 P.pallidum:71

Q4XUL7              	100.00%		D3B9P6              	100.00%
Bootstrap support for Q4XUL7 as seed ortholog is 100%.
Bootstrap support for D3B9P6 as seed ortholog is 96%.

Group of orthologs #150. Best score 313 bits
Score difference with first non-orthologous sequence - P.chabaudi:313 P.pallidum:267

Q4XV49              	100.00%		D3BT14              	100.00%
Bootstrap support for Q4XV49 as seed ortholog is 100%.
Bootstrap support for D3BT14 as seed ortholog is 100%.

Group of orthologs #151. Best score 311 bits
Score difference with first non-orthologous sequence - P.chabaudi:311 P.pallidum:311

Q4Y907              	100.00%		D3B7T8              	100.00%
Bootstrap support for Q4Y907 as seed ortholog is 100%.
Bootstrap support for D3B7T8 as seed ortholog is 100%.

Group of orthologs #152. Best score 310 bits
Score difference with first non-orthologous sequence - P.chabaudi:222 P.pallidum:233

Q4XLD5              	100.00%		D3BQG1              	100.00%
Bootstrap support for Q4XLD5 as seed ortholog is 99%.
Bootstrap support for D3BQG1 as seed ortholog is 99%.

Group of orthologs #153. Best score 310 bits
Score difference with first non-orthologous sequence - P.chabaudi:310 P.pallidum:310

Q4XX37              	100.00%		D3BMD5              	100.00%
Bootstrap support for Q4XX37 as seed ortholog is 100%.
Bootstrap support for D3BMD5 as seed ortholog is 100%.

Group of orthologs #154. Best score 309 bits
Score difference with first non-orthologous sequence - P.chabaudi:37 P.pallidum:309

Q4XRI6              	100.00%		D3AYA4              	100.00%
Bootstrap support for Q4XRI6 as seed ortholog is 52%.
Alternative seed ortholog is Q4XTV5 (37 bits away from this cluster)
Bootstrap support for D3AYA4 as seed ortholog is 100%.

Group of orthologs #155. Best score 308 bits
Score difference with first non-orthologous sequence - P.chabaudi:308 P.pallidum:308

Q4XXU4              	100.00%		D3BV25              	100.00%
Bootstrap support for Q4XXU4 as seed ortholog is 100%.
Bootstrap support for D3BV25 as seed ortholog is 100%.

Group of orthologs #156. Best score 307 bits
Score difference with first non-orthologous sequence - P.chabaudi:307 P.pallidum:307

Q4XX92              	100.00%		D3BKC5              	100.00%
Bootstrap support for Q4XX92 as seed ortholog is 100%.
Bootstrap support for D3BKC5 as seed ortholog is 100%.

Group of orthologs #157. Best score 306 bits
Score difference with first non-orthologous sequence - P.chabaudi:306 P.pallidum:245

Q4XY67              	100.00%		D3AWT2              	100.00%
Bootstrap support for Q4XY67 as seed ortholog is 100%.
Bootstrap support for D3AWT2 as seed ortholog is 100%.

Group of orthologs #158. Best score 306 bits
Score difference with first non-orthologous sequence - P.chabaudi:201 P.pallidum:190

Q4Y0J3              	100.00%		D3BE97              	100.00%
Bootstrap support for Q4Y0J3 as seed ortholog is 100%.
Bootstrap support for D3BE97 as seed ortholog is 100%.

Group of orthologs #159. Best score 305 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:83

Q4X5U3              	100.00%		D3AWF9              	100.00%
                    	       		D3BBD1              	5.70%
Bootstrap support for Q4X5U3 as seed ortholog is 99%.
Bootstrap support for D3AWF9 as seed ortholog is 97%.

Group of orthologs #160. Best score 303 bits
Score difference with first non-orthologous sequence - P.chabaudi:303 P.pallidum:303

Q4XZX2              	100.00%		D3AY61              	100.00%
Bootstrap support for Q4XZX2 as seed ortholog is 100%.
Bootstrap support for D3AY61 as seed ortholog is 100%.

Group of orthologs #161. Best score 302 bits
Score difference with first non-orthologous sequence - P.chabaudi:302 P.pallidum:302

Q4XYS3              	100.00%		D3AXJ0              	100.00%
Bootstrap support for Q4XYS3 as seed ortholog is 100%.
Bootstrap support for D3AXJ0 as seed ortholog is 100%.

Group of orthologs #162. Best score 300 bits
Score difference with first non-orthologous sequence - P.chabaudi:300 P.pallidum:36

Q4Y2P6              	100.00%		D3BII4              	100.00%
Bootstrap support for Q4Y2P6 as seed ortholog is 100%.
Bootstrap support for D3BII4 as seed ortholog is 91%.

Group of orthologs #163. Best score 298 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.pallidum:45

Q4XEG1              	100.00%		D3BG47              	100.00%
                    	       		D3BT92              	30.00%
                    	       		D3BF92              	28.44%
                    	       		D3BH58              	26.76%
                    	       		D3BBZ7              	24.51%
                    	       		D3BKJ0              	5.14%
Bootstrap support for Q4XEG1 as seed ortholog is 99%.
Bootstrap support for D3BG47 as seed ortholog is 78%.

Group of orthologs #164. Best score 297 bits
Score difference with first non-orthologous sequence - P.chabaudi:297 P.pallidum:297

Q4Y209              	100.00%		D3B684              	100.00%
Bootstrap support for Q4Y209 as seed ortholog is 100%.
Bootstrap support for D3B684 as seed ortholog is 100%.

Group of orthologs #165. Best score 297 bits
Score difference with first non-orthologous sequence - P.chabaudi:297 P.pallidum:297

Q4Y2L2              	100.00%		D3BMN8              	100.00%
Bootstrap support for Q4Y2L2 as seed ortholog is 100%.
Bootstrap support for D3BMN8 as seed ortholog is 100%.

Group of orthologs #166. Best score 296 bits
Score difference with first non-orthologous sequence - P.chabaudi:296 P.pallidum:296

Q4XST6              	100.00%		D3B3Z0              	100.00%
Bootstrap support for Q4XST6 as seed ortholog is 100%.
Bootstrap support for D3B3Z0 as seed ortholog is 100%.

Group of orthologs #167. Best score 295 bits
Score difference with first non-orthologous sequence - P.chabaudi:295 P.pallidum:295

Q4XDW8              	100.00%		D3AY16              	100.00%
Bootstrap support for Q4XDW8 as seed ortholog is 100%.
Bootstrap support for D3AY16 as seed ortholog is 100%.

Group of orthologs #168. Best score 295 bits
Score difference with first non-orthologous sequence - P.chabaudi:151 P.pallidum:129

Q4XSI9              	100.00%		D3B6C6              	100.00%
Bootstrap support for Q4XSI9 as seed ortholog is 99%.
Bootstrap support for D3B6C6 as seed ortholog is 99%.

Group of orthologs #169. Best score 294 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.pallidum:157

Q4Y754              	100.00%		D3B3W0              	100.00%
Q4XIX2              	27.98%		
Bootstrap support for Q4Y754 as seed ortholog is 100%.
Bootstrap support for D3B3W0 as seed ortholog is 100%.

Group of orthologs #170. Best score 294 bits
Score difference with first non-orthologous sequence - P.chabaudi:294 P.pallidum:294

Q4XWE5              	100.00%		D3BK65              	100.00%
Bootstrap support for Q4XWE5 as seed ortholog is 100%.
Bootstrap support for D3BK65 as seed ortholog is 100%.

Group of orthologs #171. Best score 293 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.pallidum:102

Q4Y965              	100.00%		D3BUD0              	100.00%
Bootstrap support for Q4Y965 as seed ortholog is 100%.
Bootstrap support for D3BUD0 as seed ortholog is 98%.

Group of orthologs #172. Best score 292 bits
Score difference with first non-orthologous sequence - P.chabaudi:180 P.pallidum:292

Q4Y3F8              	100.00%		D3AZG6              	100.00%
Bootstrap support for Q4Y3F8 as seed ortholog is 99%.
Bootstrap support for D3AZG6 as seed ortholog is 100%.

Group of orthologs #173. Best score 292 bits
Score difference with first non-orthologous sequence - P.chabaudi:223 P.pallidum:292

Q4XTM9              	100.00%		D3BRI9              	100.00%
Bootstrap support for Q4XTM9 as seed ortholog is 100%.
Bootstrap support for D3BRI9 as seed ortholog is 100%.

Group of orthologs #174. Best score 289 bits
Score difference with first non-orthologous sequence - P.chabaudi:289 P.pallidum:289

Q4Y4Z5              	100.00%		D3B6I9              	100.00%
                    	       		D3BMW0              	6.39%
Bootstrap support for Q4Y4Z5 as seed ortholog is 100%.
Bootstrap support for D3B6I9 as seed ortholog is 100%.

Group of orthologs #175. Best score 286 bits
Score difference with first non-orthologous sequence - P.chabaudi:286 P.pallidum:36

Q4XPF6              	100.00%		D3B892              	100.00%
Bootstrap support for Q4XPF6 as seed ortholog is 100%.
Bootstrap support for D3B892 as seed ortholog is 84%.

Group of orthologs #176. Best score 286 bits
Score difference with first non-orthologous sequence - P.chabaudi:192 P.pallidum:184

Q4XVG9              	100.00%		D3B725              	100.00%
Bootstrap support for Q4XVG9 as seed ortholog is 99%.
Bootstrap support for D3B725 as seed ortholog is 99%.

Group of orthologs #177. Best score 282 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.pallidum:282

Q4XZL6              	100.00%		D3BQW2              	100.00%
Q4X9G7              	35.25%		D3AWD2              	17.81%
                    	       		D3BGV6              	14.37%
Bootstrap support for Q4XZL6 as seed ortholog is 94%.
Bootstrap support for D3BQW2 as seed ortholog is 100%.

Group of orthologs #178. Best score 282 bits
Score difference with first non-orthologous sequence - P.chabaudi:282 P.pallidum:282

Q4XYI6              	100.00%		D3BBR7              	100.00%
Bootstrap support for Q4XYI6 as seed ortholog is 100%.
Bootstrap support for D3BBR7 as seed ortholog is 100%.

Group of orthologs #179. Best score 282 bits
Score difference with first non-orthologous sequence - P.chabaudi:282 P.pallidum:282

Q4Y4S9              	100.00%		D3BHT0              	100.00%
Bootstrap support for Q4Y4S9 as seed ortholog is 100%.
Bootstrap support for D3BHT0 as seed ortholog is 100%.

Group of orthologs #180. Best score 281 bits
Score difference with first non-orthologous sequence - P.chabaudi:222 P.pallidum:132

Q4XL93              	100.00%		D3AVX5              	100.00%
Bootstrap support for Q4XL93 as seed ortholog is 100%.
Bootstrap support for D3AVX5 as seed ortholog is 100%.

Group of orthologs #181. Best score 281 bits
Score difference with first non-orthologous sequence - P.chabaudi:281 P.pallidum:281

Q4XMG8              	100.00%		D3BKY4              	100.00%
Bootstrap support for Q4XMG8 as seed ortholog is 100%.
Bootstrap support for D3BKY4 as seed ortholog is 100%.

Group of orthologs #182. Best score 280 bits
Score difference with first non-orthologous sequence - P.chabaudi:280 P.pallidum:280

Q4XZC7              	100.00%		D3BQ29              	100.00%
Bootstrap support for Q4XZC7 as seed ortholog is 100%.
Bootstrap support for D3BQ29 as seed ortholog is 100%.

Group of orthologs #183. Best score 280 bits
Score difference with first non-orthologous sequence - P.chabaudi:280 P.pallidum:280

Q4Y7H8              	100.00%		D3BLP0              	100.00%
Bootstrap support for Q4Y7H8 as seed ortholog is 100%.
Bootstrap support for D3BLP0 as seed ortholog is 100%.

Group of orthologs #184. Best score 279 bits
Score difference with first non-orthologous sequence - P.chabaudi:279 P.pallidum:279

Q4X4K9              	100.00%		D3B2J9              	100.00%
Bootstrap support for Q4X4K9 as seed ortholog is 100%.
Bootstrap support for D3B2J9 as seed ortholog is 100%.

Group of orthologs #185. Best score 279 bits
Score difference with first non-orthologous sequence - P.chabaudi:279 P.pallidum:279

Q4Y3N5              	100.00%		D3AXY2              	100.00%
Bootstrap support for Q4Y3N5 as seed ortholog is 100%.
Bootstrap support for D3AXY2 as seed ortholog is 100%.

Group of orthologs #186. Best score 276 bits
Score difference with first non-orthologous sequence - P.chabaudi:276 P.pallidum:218

Q4Y1F8              	100.00%		D3BNF4              	100.00%
Q4Y7F2              	81.89%		
Bootstrap support for Q4Y1F8 as seed ortholog is 100%.
Bootstrap support for D3BNF4 as seed ortholog is 100%.

Group of orthologs #187. Best score 276 bits
Score difference with first non-orthologous sequence - P.chabaudi:173 P.pallidum:153

Q4Y626              	100.00%		D3B4Z6              	100.00%
Bootstrap support for Q4Y626 as seed ortholog is 99%.
Bootstrap support for D3B4Z6 as seed ortholog is 100%.

Group of orthologs #188. Best score 272 bits
Score difference with first non-orthologous sequence - P.chabaudi:125 P.pallidum:78

Q4XZ45              	100.00%		D3B5X2              	100.00%
Bootstrap support for Q4XZ45 as seed ortholog is 99%.
Bootstrap support for D3B5X2 as seed ortholog is 99%.

Group of orthologs #189. Best score 272 bits
Score difference with first non-orthologous sequence - P.chabaudi:272 P.pallidum:272

Q4Y162              	100.00%		D3BER0              	100.00%
Bootstrap support for Q4Y162 as seed ortholog is 100%.
Bootstrap support for D3BER0 as seed ortholog is 100%.

Group of orthologs #190. Best score 271 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:271

Q4Y164              	100.00%		D3B7I3              	100.00%
Bootstrap support for Q4Y164 as seed ortholog is 99%.
Bootstrap support for D3B7I3 as seed ortholog is 100%.

Group of orthologs #191. Best score 271 bits
Score difference with first non-orthologous sequence - P.chabaudi:16 P.pallidum:271

Q4XXM4              	100.00%		D3BD10              	100.00%
Bootstrap support for Q4XXM4 as seed ortholog is 70%.
Alternative seed ortholog is Q4XV18 (16 bits away from this cluster)
Bootstrap support for D3BD10 as seed ortholog is 100%.

Group of orthologs #192. Best score 271 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.pallidum:271

Q4Y131              	100.00%		D3BF27              	100.00%
Bootstrap support for Q4Y131 as seed ortholog is 96%.
Bootstrap support for D3BF27 as seed ortholog is 100%.

Group of orthologs #193. Best score 270 bits
Score difference with first non-orthologous sequence - P.chabaudi:270 P.pallidum:150

Q4Y0W9              	100.00%		D3BTG9              	100.00%
Bootstrap support for Q4Y0W9 as seed ortholog is 100%.
Bootstrap support for D3BTG9 as seed ortholog is 99%.

Group of orthologs #194. Best score 269 bits
Score difference with first non-orthologous sequence - P.chabaudi:179 P.pallidum:208

Q4XXT5              	100.00%		D3AVR8              	100.00%
Bootstrap support for Q4XXT5 as seed ortholog is 100%.
Bootstrap support for D3AVR8 as seed ortholog is 100%.

Group of orthologs #195. Best score 269 bits
Score difference with first non-orthologous sequence - P.chabaudi:269 P.pallidum:269

Q4Y7Z4              	100.00%		D3BK30              	100.00%
Bootstrap support for Q4Y7Z4 as seed ortholog is 100%.
Bootstrap support for D3BK30 as seed ortholog is 100%.

Group of orthologs #196. Best score 267 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:267

Q4Y6T8              	100.00%		D3BHD0              	100.00%
                    	       		D3BU68              	46.62%
                    	       		D3B1G6              	14.93%
                    	       		D3BFQ2              	13.72%
Bootstrap support for Q4Y6T8 as seed ortholog is 99%.
Bootstrap support for D3BHD0 as seed ortholog is 100%.

Group of orthologs #197. Best score 267 bits
Score difference with first non-orthologous sequence - P.chabaudi:198 P.pallidum:108

Q4Y2T8              	100.00%		D3B770              	100.00%
Bootstrap support for Q4Y2T8 as seed ortholog is 100%.
Bootstrap support for D3B770 as seed ortholog is 99%.

Group of orthologs #198. Best score 265 bits
Score difference with first non-orthologous sequence - P.chabaudi:265 P.pallidum:265

Q4XM98              	100.00%		D3AZB0              	100.00%
Bootstrap support for Q4XM98 as seed ortholog is 100%.
Bootstrap support for D3AZB0 as seed ortholog is 100%.

Group of orthologs #199. Best score 265 bits
Score difference with first non-orthologous sequence - P.chabaudi:265 P.pallidum:186

Q4XVZ7              	100.00%		D3BI40              	100.00%
Bootstrap support for Q4XVZ7 as seed ortholog is 100%.
Bootstrap support for D3BI40 as seed ortholog is 100%.

Group of orthologs #200. Best score 265 bits
Score difference with first non-orthologous sequence - P.chabaudi:265 P.pallidum:265

Q4Y3B8              	100.00%		D3BRX2              	100.00%
Bootstrap support for Q4Y3B8 as seed ortholog is 100%.
Bootstrap support for D3BRX2 as seed ortholog is 100%.

Group of orthologs #201. Best score 263 bits
Score difference with first non-orthologous sequence - P.chabaudi:176 P.pallidum:167

Q4Y1U9              	100.00%		D3B7P1              	100.00%
                    	       		D3BSF4              	17.51%
Bootstrap support for Q4Y1U9 as seed ortholog is 100%.
Bootstrap support for D3B7P1 as seed ortholog is 100%.

Group of orthologs #202. Best score 262 bits
Score difference with first non-orthologous sequence - P.chabaudi:262 P.pallidum:262

Q4XQ45              	100.00%		D3B3A5              	100.00%
Q4X8G9              	38.50%		
Bootstrap support for Q4XQ45 as seed ortholog is 100%.
Bootstrap support for D3B3A5 as seed ortholog is 100%.

Group of orthologs #203. Best score 261 bits
Score difference with first non-orthologous sequence - P.chabaudi:132 P.pallidum:25

Q4XE23              	100.00%		D3BGU2              	100.00%
Bootstrap support for Q4XE23 as seed ortholog is 99%.
Bootstrap support for D3BGU2 as seed ortholog is 79%.

Group of orthologs #204. Best score 260 bits
Score difference with first non-orthologous sequence - P.chabaudi:260 P.pallidum:260

Q4Y0Y3              	100.00%		D3BU07              	100.00%
Bootstrap support for Q4Y0Y3 as seed ortholog is 100%.
Bootstrap support for D3BU07 as seed ortholog is 100%.

Group of orthologs #205. Best score 259 bits
Score difference with first non-orthologous sequence - P.chabaudi:181 P.pallidum:207

Q4X7Q7              	100.00%		D3BBG6              	100.00%
Bootstrap support for Q4X7Q7 as seed ortholog is 100%.
Bootstrap support for D3BBG6 as seed ortholog is 100%.

Group of orthologs #206. Best score 259 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.pallidum:93

Q4X5A4              	100.00%		D3BEC0              	100.00%
Bootstrap support for Q4X5A4 as seed ortholog is 99%.
Bootstrap support for D3BEC0 as seed ortholog is 99%.

Group of orthologs #207. Best score 259 bits
Score difference with first non-orthologous sequence - P.chabaudi:217 P.pallidum:127

Q4XQH7              	100.00%		D3BBN6              	100.00%
Bootstrap support for Q4XQH7 as seed ortholog is 100%.
Bootstrap support for D3BBN6 as seed ortholog is 100%.

Group of orthologs #208. Best score 257 bits
Score difference with first non-orthologous sequence - P.chabaudi:257 P.pallidum:257

Q4XZN2              	100.00%		D3BRK4              	100.00%
Bootstrap support for Q4XZN2 as seed ortholog is 100%.
Bootstrap support for D3BRK4 as seed ortholog is 100%.

Group of orthologs #209. Best score 256 bits
Score difference with first non-orthologous sequence - P.chabaudi:256 P.pallidum:165

Q4XM73              	100.00%		D3B5T9              	100.00%
Bootstrap support for Q4XM73 as seed ortholog is 100%.
Bootstrap support for D3B5T9 as seed ortholog is 100%.

Group of orthologs #210. Best score 256 bits
Score difference with first non-orthologous sequence - P.chabaudi:137 P.pallidum:103

Q4XXN0              	100.00%		D3BBP5              	100.00%
Bootstrap support for Q4XXN0 as seed ortholog is 100%.
Bootstrap support for D3BBP5 as seed ortholog is 100%.

Group of orthologs #211. Best score 255 bits
Score difference with first non-orthologous sequence - P.chabaudi:255 P.pallidum:255

Q4Y1Z7              	100.00%		D3BAC7              	100.00%
Bootstrap support for Q4Y1Z7 as seed ortholog is 100%.
Bootstrap support for D3BAC7 as seed ortholog is 100%.

Group of orthologs #212. Best score 253 bits
Score difference with first non-orthologous sequence - P.chabaudi:253 P.pallidum:253

Q4Y1D0              	100.00%		D3AX31              	100.00%
Bootstrap support for Q4Y1D0 as seed ortholog is 100%.
Bootstrap support for D3AX31 as seed ortholog is 100%.

Group of orthologs #213. Best score 253 bits
Score difference with first non-orthologous sequence - P.chabaudi:75 P.pallidum:84

Q4XX91              	100.00%		D3B9E0              	100.00%
Bootstrap support for Q4XX91 as seed ortholog is 87%.
Bootstrap support for D3B9E0 as seed ortholog is 99%.

Group of orthologs #214. Best score 252 bits
Score difference with first non-orthologous sequence - P.chabaudi:252 P.pallidum:252

Q4XLQ4              	100.00%		D3B0H6              	100.00%
Bootstrap support for Q4XLQ4 as seed ortholog is 100%.
Bootstrap support for D3B0H6 as seed ortholog is 100%.

Group of orthologs #215. Best score 250 bits
Score difference with first non-orthologous sequence - P.chabaudi:250 P.pallidum:250

Q4XZ95              	100.00%		D3BKT3              	100.00%
Bootstrap support for Q4XZ95 as seed ortholog is 100%.
Bootstrap support for D3BKT3 as seed ortholog is 100%.

Group of orthologs #216. Best score 249 bits
Score difference with first non-orthologous sequence - P.chabaudi:249 P.pallidum:193

Q4XLN7              	100.00%		D3BMN0              	100.00%
Bootstrap support for Q4XLN7 as seed ortholog is 100%.
Bootstrap support for D3BMN0 as seed ortholog is 100%.

Group of orthologs #217. Best score 248 bits
Score difference with first non-orthologous sequence - P.chabaudi:248 P.pallidum:248

Q4XZD3              	100.00%		D3AXX5              	100.00%
Bootstrap support for Q4XZD3 as seed ortholog is 100%.
Bootstrap support for D3AXX5 as seed ortholog is 100%.

Group of orthologs #218. Best score 248 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.pallidum:248

Q4Y208              	100.00%		D3AVU4              	100.00%
Bootstrap support for Q4Y208 as seed ortholog is 99%.
Bootstrap support for D3AVU4 as seed ortholog is 100%.

Group of orthologs #219. Best score 248 bits
Score difference with first non-orthologous sequence - P.chabaudi:248 P.pallidum:248

Q4XYW9              	100.00%		D3B8D9              	100.00%
Bootstrap support for Q4XYW9 as seed ortholog is 100%.
Bootstrap support for D3B8D9 as seed ortholog is 100%.

Group of orthologs #220. Best score 248 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.pallidum:77

Q4XYX0              	100.00%		D3BJM0              	100.00%
Bootstrap support for Q4XYX0 as seed ortholog is 97%.
Bootstrap support for D3BJM0 as seed ortholog is 98%.

Group of orthologs #221. Best score 247 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.pallidum:86

Q4Y6R0              	100.00%		D3BGI7              	100.00%
Bootstrap support for Q4Y6R0 as seed ortholog is 100%.
Bootstrap support for D3BGI7 as seed ortholog is 100%.

Group of orthologs #222. Best score 246 bits
Score difference with first non-orthologous sequence - P.chabaudi:246 P.pallidum:246

Q4XMT5              	100.00%		D3AZF5              	100.00%
Bootstrap support for Q4XMT5 as seed ortholog is 100%.
Bootstrap support for D3AZF5 as seed ortholog is 100%.

Group of orthologs #223. Best score 245 bits
Score difference with first non-orthologous sequence - P.chabaudi:245 P.pallidum:245

Q4Y018              	100.00%		D3BE34              	100.00%
Bootstrap support for Q4Y018 as seed ortholog is 100%.
Bootstrap support for D3BE34 as seed ortholog is 100%.

Group of orthologs #224. Best score 244 bits
Score difference with first non-orthologous sequence - P.chabaudi:244 P.pallidum:244

Q4Y718              	100.00%		D3B3W9              	100.00%
Bootstrap support for Q4Y718 as seed ortholog is 100%.
Bootstrap support for D3B3W9 as seed ortholog is 100%.

Group of orthologs #225. Best score 243 bits
Score difference with first non-orthologous sequence - P.chabaudi:243 P.pallidum:243

Q4XXY9              	100.00%		D3B8R1              	100.00%
Bootstrap support for Q4XXY9 as seed ortholog is 100%.
Bootstrap support for D3B8R1 as seed ortholog is 100%.

Group of orthologs #226. Best score 242 bits
Score difference with first non-orthologous sequence - P.chabaudi:242 P.pallidum:242

Q4X290              	100.00%		D3BTV2              	100.00%
Bootstrap support for Q4X290 as seed ortholog is 100%.
Bootstrap support for D3BTV2 as seed ortholog is 100%.

Group of orthologs #227. Best score 242 bits
Score difference with first non-orthologous sequence - P.chabaudi:182 P.pallidum:242

Q4Y7S8              	100.00%		D3BU50              	100.00%
Bootstrap support for Q4Y7S8 as seed ortholog is 99%.
Bootstrap support for D3BU50 as seed ortholog is 100%.

Group of orthologs #228. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.pallidum:122

Q4XME4              	100.00%		D3B7N8              	100.00%
Bootstrap support for Q4XME4 as seed ortholog is 100%.
Bootstrap support for D3B7N8 as seed ortholog is 97%.

Group of orthologs #229. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.pallidum:240

Q4XY51              	100.00%		D3BBC2              	100.00%
Bootstrap support for Q4XY51 as seed ortholog is 100%.
Bootstrap support for D3BBC2 as seed ortholog is 100%.

Group of orthologs #230. Best score 238 bits
Score difference with first non-orthologous sequence - P.chabaudi:238 P.pallidum:238

Q4XYX2              	100.00%		D3B6E5              	100.00%
Bootstrap support for Q4XYX2 as seed ortholog is 100%.
Bootstrap support for D3B6E5 as seed ortholog is 100%.

Group of orthologs #231. Best score 237 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.pallidum:193

Q4XA45              	100.00%		D3B0N9              	100.00%
Bootstrap support for Q4XA45 as seed ortholog is 100%.
Bootstrap support for D3B0N9 as seed ortholog is 100%.

Group of orthologs #232. Best score 236 bits
Score difference with first non-orthologous sequence - P.chabaudi:110 P.pallidum:105

Q4Y2M1              	100.00%		D3BD39              	100.00%
                    	       		D3BD41              	80.33%
Bootstrap support for Q4Y2M1 as seed ortholog is 99%.
Bootstrap support for D3BD39 as seed ortholog is 99%.

Group of orthologs #233. Best score 236 bits
Score difference with first non-orthologous sequence - P.chabaudi:236 P.pallidum:236

Q4XLX9              	100.00%		D3B4H2              	100.00%
Bootstrap support for Q4XLX9 as seed ortholog is 100%.
Bootstrap support for D3B4H2 as seed ortholog is 100%.

Group of orthologs #234. Best score 236 bits
Score difference with first non-orthologous sequence - P.chabaudi:236 P.pallidum:236

Q4Y5I2              	100.00%		D3B2S4              	100.00%
Bootstrap support for Q4Y5I2 as seed ortholog is 100%.
Bootstrap support for D3B2S4 as seed ortholog is 100%.

Group of orthologs #235. Best score 235 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.pallidum:95

Q4XNS6              	100.00%		D3AZ82              	100.00%
Bootstrap support for Q4XNS6 as seed ortholog is 98%.
Bootstrap support for D3AZ82 as seed ortholog is 99%.

Group of orthologs #236. Best score 235 bits
Score difference with first non-orthologous sequence - P.chabaudi:235 P.pallidum:235

Q4XPN8              	100.00%		D3B298              	100.00%
Bootstrap support for Q4XPN8 as seed ortholog is 100%.
Bootstrap support for D3B298 as seed ortholog is 100%.

Group of orthologs #237. Best score 234 bits
Score difference with first non-orthologous sequence - P.chabaudi:234 P.pallidum:88

Q4XNP8              	100.00%		D3B3S8              	100.00%
Bootstrap support for Q4XNP8 as seed ortholog is 100%.
Bootstrap support for D3B3S8 as seed ortholog is 100%.

Group of orthologs #238. Best score 234 bits
Score difference with first non-orthologous sequence - P.chabaudi:174 P.pallidum:116

Q4Y142              	100.00%		D3BHC9              	100.00%
Bootstrap support for Q4Y142 as seed ortholog is 100%.
Bootstrap support for D3BHC9 as seed ortholog is 99%.

Group of orthologs #239. Best score 233 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:54

Q4X2H2              	100.00%		D3BBN0              	100.00%
Bootstrap support for Q4X2H2 as seed ortholog is 97%.
Bootstrap support for D3BBN0 as seed ortholog is 88%.

Group of orthologs #240. Best score 232 bits
Score difference with first non-orthologous sequence - P.chabaudi:232 P.pallidum:232

Q4XYL4              	100.00%		D3BCL2              	100.00%
                    	       		D3AY91              	20.20%
Bootstrap support for Q4XYL4 as seed ortholog is 100%.
Bootstrap support for D3BCL2 as seed ortholog is 100%.

Group of orthologs #241. Best score 232 bits
Score difference with first non-orthologous sequence - P.chabaudi:39 P.pallidum:44

Q4Y1S2              	100.00%		D3B755              	100.00%
Bootstrap support for Q4Y1S2 as seed ortholog is 84%.
Bootstrap support for D3B755 as seed ortholog is 56%.
Alternative seed ortholog is D3BAU8 (44 bits away from this cluster)

Group of orthologs #242. Best score 232 bits
Score difference with first non-orthologous sequence - P.chabaudi:232 P.pallidum:232

Q4Y575              	100.00%		D3BUZ2              	100.00%
Bootstrap support for Q4Y575 as seed ortholog is 100%.
Bootstrap support for D3BUZ2 as seed ortholog is 100%.

Group of orthologs #243. Best score 231 bits
Score difference with first non-orthologous sequence - P.chabaudi:231 P.pallidum:231

Q4X6J0              	100.00%		D3B6T4              	100.00%
Bootstrap support for Q4X6J0 as seed ortholog is 100%.
Bootstrap support for D3B6T4 as seed ortholog is 100%.

Group of orthologs #244. Best score 231 bits
Score difference with first non-orthologous sequence - P.chabaudi:231 P.pallidum:231

Q4X7J0              	100.00%		D3BPW9              	100.00%
Bootstrap support for Q4X7J0 as seed ortholog is 100%.
Bootstrap support for D3BPW9 as seed ortholog is 100%.

Group of orthologs #245. Best score 230 bits
Score difference with first non-orthologous sequence - P.chabaudi:230 P.pallidum:230

Q4Y3X5              	100.00%		D3AYQ3              	100.00%
Bootstrap support for Q4Y3X5 as seed ortholog is 100%.
Bootstrap support for D3AYQ3 as seed ortholog is 100%.

Group of orthologs #246. Best score 230 bits
Score difference with first non-orthologous sequence - P.chabaudi:230 P.pallidum:129

Q4Y3D2              	100.00%		D3B367              	100.00%
Bootstrap support for Q4Y3D2 as seed ortholog is 100%.
Bootstrap support for D3B367 as seed ortholog is 98%.

Group of orthologs #247. Best score 229 bits
Score difference with first non-orthologous sequence - P.chabaudi:229 P.pallidum:229

Q4Y225              	100.00%		D3B5K0              	100.00%
Bootstrap support for Q4Y225 as seed ortholog is 100%.
Bootstrap support for D3B5K0 as seed ortholog is 100%.

Group of orthologs #248. Best score 228 bits
Score difference with first non-orthologous sequence - P.chabaudi:228 P.pallidum:228

Q4XI43              	100.00%		D3B072              	100.00%
Bootstrap support for Q4XI43 as seed ortholog is 100%.
Bootstrap support for D3B072 as seed ortholog is 100%.

Group of orthologs #249. Best score 228 bits
Score difference with first non-orthologous sequence - P.chabaudi:228 P.pallidum:228

Q4Y903              	100.00%		D3BR69              	100.00%
Bootstrap support for Q4Y903 as seed ortholog is 100%.
Bootstrap support for D3BR69 as seed ortholog is 100%.

Group of orthologs #250. Best score 227 bits
Score difference with first non-orthologous sequence - P.chabaudi:227 P.pallidum:227

Q4XDA3              	100.00%		D3B3Z7              	100.00%
Bootstrap support for Q4XDA3 as seed ortholog is 100%.
Bootstrap support for D3B3Z7 as seed ortholog is 100%.

Group of orthologs #251. Best score 227 bits
Score difference with first non-orthologous sequence - P.chabaudi:99 P.pallidum:90

Q4XNV1              	100.00%		D3BJI2              	100.00%
Bootstrap support for Q4XNV1 as seed ortholog is 99%.
Bootstrap support for D3BJI2 as seed ortholog is 99%.

Group of orthologs #252. Best score 225 bits
Score difference with first non-orthologous sequence - P.chabaudi:225 P.pallidum:225

Q4Y127              	100.00%		D3BRG0              	100.00%
                    	       		D3BHW3              	21.60%
Bootstrap support for Q4Y127 as seed ortholog is 100%.
Bootstrap support for D3BRG0 as seed ortholog is 100%.

Group of orthologs #253. Best score 225 bits
Score difference with first non-orthologous sequence - P.chabaudi:225 P.pallidum:225

Q4X909              	100.00%		D3B4P1              	100.00%
Bootstrap support for Q4X909 as seed ortholog is 100%.
Bootstrap support for D3B4P1 as seed ortholog is 100%.

Group of orthologs #254. Best score 225 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.pallidum:112

Q4XDT7              	100.00%		D3BAW0              	100.00%
Bootstrap support for Q4XDT7 as seed ortholog is 99%.
Bootstrap support for D3BAW0 as seed ortholog is 99%.

Group of orthologs #255. Best score 225 bits
Score difference with first non-orthologous sequence - P.chabaudi:225 P.pallidum:225

Q4XR57              	100.00%		D3B6L9              	100.00%
Bootstrap support for Q4XR57 as seed ortholog is 100%.
Bootstrap support for D3B6L9 as seed ortholog is 100%.

Group of orthologs #256. Best score 225 bits
Score difference with first non-orthologous sequence - P.chabaudi:225 P.pallidum:225

Q4Y7G2              	100.00%		D3BB07              	100.00%
Bootstrap support for Q4Y7G2 as seed ortholog is 100%.
Bootstrap support for D3BB07 as seed ortholog is 100%.

Group of orthologs #257. Best score 224 bits
Score difference with first non-orthologous sequence - P.chabaudi:43 P.pallidum:48

Q4XMR4              	100.00%		D3B0N1              	100.00%
Bootstrap support for Q4XMR4 as seed ortholog is 98%.
Bootstrap support for D3B0N1 as seed ortholog is 99%.

Group of orthologs #258. Best score 224 bits
Score difference with first non-orthologous sequence - P.chabaudi:224 P.pallidum:224

Q4XDV6              	100.00%		D3BNE3              	100.00%
Bootstrap support for Q4XDV6 as seed ortholog is 100%.
Bootstrap support for D3BNE3 as seed ortholog is 100%.

Group of orthologs #259. Best score 224 bits
Score difference with first non-orthologous sequence - P.chabaudi:224 P.pallidum:224

Q4XR09              	100.00%		D3BBU3              	100.00%
Bootstrap support for Q4XR09 as seed ortholog is 100%.
Bootstrap support for D3BBU3 as seed ortholog is 100%.

Group of orthologs #260. Best score 224 bits
Score difference with first non-orthologous sequence - P.chabaudi:224 P.pallidum:224

Q4Y895              	100.00%		D3BEF1              	100.00%
Bootstrap support for Q4Y895 as seed ortholog is 100%.
Bootstrap support for D3BEF1 as seed ortholog is 100%.

Group of orthologs #261. Best score 223 bits
Score difference with first non-orthologous sequence - P.chabaudi:223 P.pallidum:223

Q4XPR3              	100.00%		D3BCZ8              	100.00%
Bootstrap support for Q4XPR3 as seed ortholog is 100%.
Bootstrap support for D3BCZ8 as seed ortholog is 100%.

Group of orthologs #262. Best score 222 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.pallidum:77

Q4XW47              	100.00%		D3B8N7              	100.00%
                    	       		D3B6H5              	7.14%
Bootstrap support for Q4XW47 as seed ortholog is 99%.
Bootstrap support for D3B8N7 as seed ortholog is 96%.

Group of orthologs #263. Best score 222 bits
Score difference with first non-orthologous sequence - P.chabaudi:165 P.pallidum:166

Q4XZT7              	100.00%		D3B210              	100.00%
Bootstrap support for Q4XZT7 as seed ortholog is 100%.
Bootstrap support for D3B210 as seed ortholog is 99%.

Group of orthologs #264. Best score 222 bits
Score difference with first non-orthologous sequence - P.chabaudi:166 P.pallidum:169

Q4XYE6              	100.00%		D3B6G7              	100.00%
Bootstrap support for Q4XYE6 as seed ortholog is 100%.
Bootstrap support for D3B6G7 as seed ortholog is 100%.

Group of orthologs #265. Best score 220 bits
Score difference with first non-orthologous sequence - P.chabaudi:2 P.pallidum:143

Q4XZK2              	100.00%		D3BMP0              	100.00%
                    	       		D3BF29              	38.96%
                    	       		D3B9B8              	25.49%
                    	       		D3B8D6              	11.17%
Bootstrap support for Q4XZK2 as seed ortholog is 46%.
Alternative seed ortholog is Q4X6K1 (2 bits away from this cluster)
Bootstrap support for D3BMP0 as seed ortholog is 99%.

Group of orthologs #266. Best score 220 bits
Score difference with first non-orthologous sequence - P.chabaudi:220 P.pallidum:45

Q4Y699              	100.00%		D3B8P9              	100.00%
Bootstrap support for Q4Y699 as seed ortholog is 100%.
Bootstrap support for D3B8P9 as seed ortholog is 83%.

Group of orthologs #267. Best score 219 bits
Score difference with first non-orthologous sequence - P.chabaudi:219 P.pallidum:219

Q4XE90              	100.00%		D3BBF0              	100.00%
Bootstrap support for Q4XE90 as seed ortholog is 100%.
Bootstrap support for D3BBF0 as seed ortholog is 100%.

Group of orthologs #268. Best score 219 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.pallidum:151

Q4XZ86              	100.00%		D3BJX9              	100.00%
Bootstrap support for Q4XZ86 as seed ortholog is 99%.
Bootstrap support for D3BJX9 as seed ortholog is 100%.

Group of orthologs #269. Best score 218 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:218

Q4XXL5              	100.00%		D3B280              	100.00%
                    	       		D3BV53              	16.22%
Bootstrap support for Q4XXL5 as seed ortholog is 99%.
Bootstrap support for D3B280 as seed ortholog is 100%.

Group of orthologs #270. Best score 218 bits
Score difference with first non-orthologous sequence - P.chabaudi:218 P.pallidum:218

Q4XWM9              	100.00%		D3AYC5              	100.00%
Bootstrap support for Q4XWM9 as seed ortholog is 100%.
Bootstrap support for D3AYC5 as seed ortholog is 100%.

Group of orthologs #271. Best score 217 bits
Score difference with first non-orthologous sequence - P.chabaudi:217 P.pallidum:217

Q4XYQ1              	100.00%		D3B913              	100.00%
Bootstrap support for Q4XYQ1 as seed ortholog is 100%.
Bootstrap support for D3B913 as seed ortholog is 100%.

Group of orthologs #272. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:215 P.pallidum:215

Q4XL47              	100.00%		D3B0J5              	100.00%
Q4Y1L3              	84.61%		
Q4Y7C9              	81.90%		
Q4XIZ4              	47.12%		
Bootstrap support for Q4XL47 as seed ortholog is 100%.
Bootstrap support for D3B0J5 as seed ortholog is 100%.

Group of orthologs #273. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:215 P.pallidum:215

Q4XWF4              	100.00%		D3BV90              	100.00%
Bootstrap support for Q4XWF4 as seed ortholog is 100%.
Bootstrap support for D3BV90 as seed ortholog is 100%.

Group of orthologs #274. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:215 P.pallidum:215

Q4Y740              	100.00%		D3BM72              	100.00%
Bootstrap support for Q4Y740 as seed ortholog is 100%.
Bootstrap support for D3BM72 as seed ortholog is 100%.

Group of orthologs #275. Best score 214 bits
Score difference with first non-orthologous sequence - P.chabaudi:214 P.pallidum:214

Q4XZ38              	100.00%		D3BFU2              	100.00%
Q4XFK5              	34.73%		
Bootstrap support for Q4XZ38 as seed ortholog is 100%.
Bootstrap support for D3BFU2 as seed ortholog is 100%.

Group of orthologs #276. Best score 213 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:52

Q4Y237              	100.00%		D3BLV3              	100.00%
Q4XEQ5              	51.44%		D3BP55              	38.81%
                    	       		D3BN54              	27.86%
                    	       		D3BL86              	12.44%
                    	       		D3BTQ5              	11.94%
Bootstrap support for Q4Y237 as seed ortholog is 99%.
Bootstrap support for D3BLV3 as seed ortholog is 97%.

Group of orthologs #277. Best score 213 bits
Score difference with first non-orthologous sequence - P.chabaudi:213 P.pallidum:213

Q4Y410              	100.00%		D3BBQ8              	100.00%
Bootstrap support for Q4Y410 as seed ortholog is 100%.
Bootstrap support for D3BBQ8 as seed ortholog is 100%.

Group of orthologs #278. Best score 212 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.pallidum:64

Q4Y8B5              	100.00%		D3BUX2              	100.00%
Bootstrap support for Q4Y8B5 as seed ortholog is 100%.
Bootstrap support for D3BUX2 as seed ortholog is 99%.

Group of orthologs #279. Best score 211 bits
Score difference with first non-orthologous sequence - P.chabaudi:211 P.pallidum:211

Q4Y1Z2              	100.00%		D3AXK7              	100.00%
Bootstrap support for Q4Y1Z2 as seed ortholog is 100%.
Bootstrap support for D3AXK7 as seed ortholog is 100%.

Group of orthologs #280. Best score 210 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.pallidum:147

Q4XTM5              	100.00%		D3BL30              	100.00%
                    	       		D3B4X1              	5.53%
Bootstrap support for Q4XTM5 as seed ortholog is 100%.
Bootstrap support for D3BL30 as seed ortholog is 100%.

Group of orthologs #281. Best score 210 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.pallidum:210

Q4X4Q9              	100.00%		D3B3B2              	100.00%
Bootstrap support for Q4X4Q9 as seed ortholog is 100%.
Bootstrap support for D3B3B2 as seed ortholog is 100%.

Group of orthologs #282. Best score 210 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.pallidum:210

Q4XWA1              	100.00%		D3B8K8              	100.00%
Bootstrap support for Q4XWA1 as seed ortholog is 100%.
Bootstrap support for D3B8K8 as seed ortholog is 100%.

Group of orthologs #283. Best score 210 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.pallidum:94

Q4XMM8              	100.00%		D3BM03              	100.00%
Bootstrap support for Q4XMM8 as seed ortholog is 100%.
Bootstrap support for D3BM03 as seed ortholog is 96%.

Group of orthologs #284. Best score 209 bits
Score difference with first non-orthologous sequence - P.chabaudi:209 P.pallidum:209

Q4XM50              	100.00%		D3BQ33              	100.00%
Bootstrap support for Q4XM50 as seed ortholog is 100%.
Bootstrap support for D3BQ33 as seed ortholog is 100%.

Group of orthologs #285. Best score 208 bits
Score difference with first non-orthologous sequence - P.chabaudi:208 P.pallidum:208

Q4X5E7              	100.00%		D3BC23              	100.00%
Q4X9Z9              	63.67%		D3B1K0              	31.35%
                    	       		D3B8P3              	23.84%
                    	       		D3B158              	8.12%
                    	       		D3BDA2              	7.71%
                    	       		D3BLC1              	7.30%
Bootstrap support for Q4X5E7 as seed ortholog is 100%.
Bootstrap support for D3BC23 as seed ortholog is 100%.

Group of orthologs #286. Best score 208 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.pallidum:142

Q4Y2D5              	100.00%		D3AVM8              	100.00%
Bootstrap support for Q4Y2D5 as seed ortholog is 99%.
Bootstrap support for D3AVM8 as seed ortholog is 99%.

Group of orthologs #287. Best score 208 bits
Score difference with first non-orthologous sequence - P.chabaudi:208 P.pallidum:87

Q4Y084              	100.00%		D3BAC1              	100.00%
Bootstrap support for Q4Y084 as seed ortholog is 100%.
Bootstrap support for D3BAC1 as seed ortholog is 98%.

Group of orthologs #288. Best score 207 bits
Score difference with first non-orthologous sequence - P.chabaudi:207 P.pallidum:207

Q4XN87              	100.00%		D3B454              	100.00%
Bootstrap support for Q4XN87 as seed ortholog is 100%.
Bootstrap support for D3B454 as seed ortholog is 100%.

Group of orthologs #289. Best score 207 bits
Score difference with first non-orthologous sequence - P.chabaudi:207 P.pallidum:207

Q4XY30              	100.00%		D3BHH0              	100.00%
Bootstrap support for Q4XY30 as seed ortholog is 100%.
Bootstrap support for D3BHH0 as seed ortholog is 100%.

Group of orthologs #290. Best score 206 bits
Score difference with first non-orthologous sequence - P.chabaudi:206 P.pallidum:160

Q4XQN0              	100.00%		D3AX76              	100.00%
Bootstrap support for Q4XQN0 as seed ortholog is 100%.
Bootstrap support for D3AX76 as seed ortholog is 100%.

Group of orthologs #291. Best score 206 bits
Score difference with first non-orthologous sequence - P.chabaudi:206 P.pallidum:206

Q4XK10              	100.00%		D3BHV4              	100.00%
Bootstrap support for Q4XK10 as seed ortholog is 100%.
Bootstrap support for D3BHV4 as seed ortholog is 100%.

Group of orthologs #292. Best score 206 bits
Score difference with first non-orthologous sequence - P.chabaudi:206 P.pallidum:206

Q4Y7V7              	100.00%		D3B0J0              	100.00%
Bootstrap support for Q4Y7V7 as seed ortholog is 100%.
Bootstrap support for D3B0J0 as seed ortholog is 100%.

Group of orthologs #293. Best score 206 bits
Score difference with first non-orthologous sequence - P.chabaudi:206 P.pallidum:206

Q4XWF3              	100.00%		D3BVG5              	100.00%
Bootstrap support for Q4XWF3 as seed ortholog is 100%.
Bootstrap support for D3BVG5 as seed ortholog is 100%.

Group of orthologs #294. Best score 205 bits
Score difference with first non-orthologous sequence - P.chabaudi:205 P.pallidum:205

Q4XNE9              	100.00%		D3B1K3              	100.00%
Bootstrap support for Q4XNE9 as seed ortholog is 100%.
Bootstrap support for D3B1K3 as seed ortholog is 100%.

Group of orthologs #295. Best score 205 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.pallidum:54

Q4Y613              	100.00%		D3AY59              	100.00%
Bootstrap support for Q4Y613 as seed ortholog is 99%.
Bootstrap support for D3AY59 as seed ortholog is 99%.

Group of orthologs #296. Best score 205 bits
Score difference with first non-orthologous sequence - P.chabaudi:205 P.pallidum:205

Q4XLH6              	100.00%		D3BSQ9              	100.00%
Bootstrap support for Q4XLH6 as seed ortholog is 100%.
Bootstrap support for D3BSQ9 as seed ortholog is 100%.

Group of orthologs #297. Best score 204 bits
Score difference with first non-orthologous sequence - P.chabaudi:204 P.pallidum:138

Q4XRP9              	100.00%		D3BM61              	100.00%
Bootstrap support for Q4XRP9 as seed ortholog is 100%.
Bootstrap support for D3BM61 as seed ortholog is 99%.

Group of orthologs #298. Best score 203 bits
Score difference with first non-orthologous sequence - P.chabaudi:203 P.pallidum:203

Q4XZH2              	100.00%		D3B3A4              	100.00%
Bootstrap support for Q4XZH2 as seed ortholog is 100%.
Bootstrap support for D3B3A4 as seed ortholog is 100%.

Group of orthologs #299. Best score 202 bits
Score difference with first non-orthologous sequence - P.chabaudi:202 P.pallidum:202

Q4XU41              	100.00%		D3BKB2              	100.00%
Bootstrap support for Q4XU41 as seed ortholog is 100%.
Bootstrap support for D3BKB2 as seed ortholog is 100%.

Group of orthologs #300. Best score 201 bits
Score difference with first non-orthologous sequence - P.chabaudi:122 P.pallidum:201

Q4XU30              	100.00%		D3B782              	100.00%
                    	       		D3AX99              	61.76%
Bootstrap support for Q4XU30 as seed ortholog is 100%.
Bootstrap support for D3B782 as seed ortholog is 100%.

Group of orthologs #301. Best score 201 bits
Score difference with first non-orthologous sequence - P.chabaudi:146 P.pallidum:201

Q4XX78              	100.00%		D3BQE6              	100.00%
                    	       		D3BRG2              	8.39%
Bootstrap support for Q4XX78 as seed ortholog is 100%.
Bootstrap support for D3BQE6 as seed ortholog is 100%.

Group of orthologs #302. Best score 200 bits
Score difference with first non-orthologous sequence - P.chabaudi:200 P.pallidum:200

Q4XYH3              	100.00%		D3BBS1              	100.00%
Q4XB44              	42.40%		
Bootstrap support for Q4XYH3 as seed ortholog is 100%.
Bootstrap support for D3BBS1 as seed ortholog is 100%.

Group of orthologs #303. Best score 200 bits
Score difference with first non-orthologous sequence - P.chabaudi:200 P.pallidum:200

Q4X2Q6              	100.00%		D3BCA4              	100.00%
Bootstrap support for Q4X2Q6 as seed ortholog is 100%.
Bootstrap support for D3BCA4 as seed ortholog is 100%.

Group of orthologs #304. Best score 200 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:200

Q4XWQ2              	100.00%		D3B7Z4              	100.00%
Bootstrap support for Q4XWQ2 as seed ortholog is 99%.
Bootstrap support for D3B7Z4 as seed ortholog is 100%.

Group of orthologs #305. Best score 200 bits
Score difference with first non-orthologous sequence - P.chabaudi:200 P.pallidum:200

Q4XPX4              	100.00%		D3BQU0              	100.00%
Bootstrap support for Q4XPX4 as seed ortholog is 100%.
Bootstrap support for D3BQU0 as seed ortholog is 100%.

Group of orthologs #306. Best score 198 bits
Score difference with first non-orthologous sequence - P.chabaudi:198 P.pallidum:1

Q4Y4R9              	100.00%		D3BV13              	100.00%
                    	       		D3B1M7              	6.07%
Bootstrap support for Q4Y4R9 as seed ortholog is 100%.
Bootstrap support for D3BV13 as seed ortholog is 86%.

Group of orthologs #307. Best score 198 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.pallidum:198

Q4XVL1              	100.00%		D3B6S2              	100.00%
Bootstrap support for Q4XVL1 as seed ortholog is 99%.
Bootstrap support for D3B6S2 as seed ortholog is 100%.

Group of orthologs #308. Best score 198 bits
Score difference with first non-orthologous sequence - P.chabaudi:13 P.pallidum:40

Q4XV45              	100.00%		D3BKT2              	100.00%
Bootstrap support for Q4XV45 as seed ortholog is 66%.
Alternative seed ortholog is Q4XX74 (13 bits away from this cluster)
Bootstrap support for D3BKT2 as seed ortholog is 89%.

Group of orthologs #309. Best score 198 bits
Score difference with first non-orthologous sequence - P.chabaudi:198 P.pallidum:198

Q4Y4V5              	100.00%		D3BN73              	100.00%
Bootstrap support for Q4Y4V5 as seed ortholog is 100%.
Bootstrap support for D3BN73 as seed ortholog is 100%.

Group of orthologs #310. Best score 197 bits
Score difference with first non-orthologous sequence - P.chabaudi:21 P.pallidum:49

Q4X653              	100.00%		D3B0H3              	100.00%
                    	       		D3AWN3              	14.23%
Bootstrap support for Q4X653 as seed ortholog is 77%.
Bootstrap support for D3B0H3 as seed ortholog is 96%.

Group of orthologs #311. Best score 197 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:131

Q4Y227              	100.00%		D3B9R3              	100.00%
Bootstrap support for Q4Y227 as seed ortholog is 93%.
Bootstrap support for D3B9R3 as seed ortholog is 99%.

Group of orthologs #312. Best score 197 bits
Score difference with first non-orthologous sequence - P.chabaudi:197 P.pallidum:197

Q4Y351              	100.00%		D3BD56              	100.00%
Bootstrap support for Q4Y351 as seed ortholog is 100%.
Bootstrap support for D3BD56 as seed ortholog is 100%.

Group of orthologs #313. Best score 197 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.pallidum:43

Q4XZQ6              	100.00%		D3BNT3              	100.00%
Bootstrap support for Q4XZQ6 as seed ortholog is 99%.
Bootstrap support for D3BNT3 as seed ortholog is 95%.

Group of orthologs #314. Best score 195 bits
Score difference with first non-orthologous sequence - P.chabaudi:195 P.pallidum:195

Q4XYI5              	100.00%		D3B5I1              	100.00%
Bootstrap support for Q4XYI5 as seed ortholog is 100%.
Bootstrap support for D3B5I1 as seed ortholog is 100%.

Group of orthologs #315. Best score 195 bits
Score difference with first non-orthologous sequence - P.chabaudi:195 P.pallidum:195

Q4XSS4              	100.00%		D3BMH8              	100.00%
Bootstrap support for Q4XSS4 as seed ortholog is 100%.
Bootstrap support for D3BMH8 as seed ortholog is 100%.

Group of orthologs #316. Best score 195 bits
Score difference with first non-orthologous sequence - P.chabaudi:195 P.pallidum:195

Q4Y052              	100.00%		D3BLD1              	100.00%
Bootstrap support for Q4Y052 as seed ortholog is 100%.
Bootstrap support for D3BLD1 as seed ortholog is 100%.

Group of orthologs #317. Best score 195 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.pallidum:108

Q4Y3H9              	100.00%		D3BP64              	100.00%
Bootstrap support for Q4Y3H9 as seed ortholog is 99%.
Bootstrap support for D3BP64 as seed ortholog is 100%.

Group of orthologs #318. Best score 194 bits
Score difference with first non-orthologous sequence - P.chabaudi:194 P.pallidum:194

Q4XEL0              	100.00%		D3BSG7              	100.00%
Bootstrap support for Q4XEL0 as seed ortholog is 100%.
Bootstrap support for D3BSG7 as seed ortholog is 100%.

Group of orthologs #319. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:127

Q4XFS7              	100.00%		D3BU79              	100.00%
Q4XNF8              	39.48%		
Q4Y012              	36.60%		
Bootstrap support for Q4XFS7 as seed ortholog is 99%.
Bootstrap support for D3BU79 as seed ortholog is 99%.

Group of orthologs #320. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:193 P.pallidum:193

Q4XR67              	100.00%		D3BIU0              	100.00%
                    	       		D3BKA7              	15.51%
Bootstrap support for Q4XR67 as seed ortholog is 100%.
Bootstrap support for D3BIU0 as seed ortholog is 100%.

Group of orthologs #321. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:193 P.pallidum:193

Q4XNZ2              	100.00%		D3B1Z3              	100.00%
Bootstrap support for Q4XNZ2 as seed ortholog is 100%.
Bootstrap support for D3B1Z3 as seed ortholog is 100%.

Group of orthologs #322. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:193 P.pallidum:193

Q4XQG1              	100.00%		D3BKU3              	100.00%
Bootstrap support for Q4XQG1 as seed ortholog is 100%.
Bootstrap support for D3BKU3 as seed ortholog is 100%.

Group of orthologs #323. Best score 192 bits
Score difference with first non-orthologous sequence - P.chabaudi:192 P.pallidum:192

Q4XN56              	100.00%		D3BBV3              	100.00%
Bootstrap support for Q4XN56 as seed ortholog is 100%.
Bootstrap support for D3BBV3 as seed ortholog is 100%.

Group of orthologs #324. Best score 192 bits
Score difference with first non-orthologous sequence - P.chabaudi:192 P.pallidum:192

Q4Y5T5              	100.00%		D3AW89              	100.00%
Bootstrap support for Q4Y5T5 as seed ortholog is 100%.
Bootstrap support for D3AW89 as seed ortholog is 100%.

Group of orthologs #325. Best score 192 bits
Score difference with first non-orthologous sequence - P.chabaudi:192 P.pallidum:192

Q4Y4I9              	100.00%		D3BPW6              	100.00%
Bootstrap support for Q4Y4I9 as seed ortholog is 100%.
Bootstrap support for D3BPW6 as seed ortholog is 100%.

Group of orthologs #326. Best score 191 bits
Score difference with first non-orthologous sequence - P.chabaudi:9 P.pallidum:37

Q4XSU7              	100.00%		D3B3T9              	100.00%
                    	       		D3BD61              	21.02%
                    	       		D3BGZ7              	19.89%
                    	       		D3B1U7              	19.89%
                    	       		D3BD62              	19.32%
                    	       		D3BH59              	17.61%
                    	       		D3B9Z5              	14.20%
                    	       		D3BD60              	13.64%
                    	       		D3B9Z3              	9.09%
Bootstrap support for Q4XSU7 as seed ortholog is 68%.
Alternative seed ortholog is Q4XJM8 (9 bits away from this cluster)
Bootstrap support for D3B3T9 as seed ortholog is 95%.

Group of orthologs #327. Best score 191 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.pallidum:13

Q4X4M9              	100.00%		D3B2S7              	100.00%
Q4X8E4              	64.02%		
Bootstrap support for Q4X4M9 as seed ortholog is 100%.
Bootstrap support for D3B2S7 as seed ortholog is 60%.
Alternative seed ortholog is D3B7E4 (13 bits away from this cluster)

Group of orthologs #328. Best score 191 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.pallidum:191

Q4X2I8              	100.00%		D3BJ52              	100.00%
Bootstrap support for Q4X2I8 as seed ortholog is 100%.
Bootstrap support for D3BJ52 as seed ortholog is 100%.

Group of orthologs #329. Best score 190 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.pallidum:190

Q4Y206              	100.00%		D3AY71              	100.00%
                    	       		D3BVG6              	34.98%
                    	       		D3BEG0              	7.08%
Bootstrap support for Q4Y206 as seed ortholog is 98%.
Bootstrap support for D3AY71 as seed ortholog is 100%.

Group of orthologs #330. Best score 190 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.pallidum:39

Q4X2R4              	100.00%		D3BAY1              	100.00%
Q4X6Q1              	8.29%		
Bootstrap support for Q4X2R4 as seed ortholog is 98%.
Bootstrap support for D3BAY1 as seed ortholog is 93%.

Group of orthologs #331. Best score 190 bits
Score difference with first non-orthologous sequence - P.chabaudi:190 P.pallidum:190

Q4XS28              	100.00%		D3B8S5              	100.00%
Bootstrap support for Q4XS28 as seed ortholog is 100%.
Bootstrap support for D3B8S5 as seed ortholog is 100%.

Group of orthologs #332. Best score 189 bits
Score difference with first non-orthologous sequence - P.chabaudi:189 P.pallidum:189

Q4Y4Y4              	100.00%		D3AY53              	100.00%
Bootstrap support for Q4Y4Y4 as seed ortholog is 100%.
Bootstrap support for D3AY53 as seed ortholog is 100%.

Group of orthologs #333. Best score 189 bits
Score difference with first non-orthologous sequence - P.chabaudi:189 P.pallidum:189

Q4XQ98              	100.00%		D3BH42              	100.00%
Bootstrap support for Q4XQ98 as seed ortholog is 100%.
Bootstrap support for D3BH42 as seed ortholog is 100%.

Group of orthologs #334. Best score 189 bits
Score difference with first non-orthologous sequence - P.chabaudi:189 P.pallidum:189

Q4XUL4              	100.00%		D3BG85              	100.00%
Bootstrap support for Q4XUL4 as seed ortholog is 100%.
Bootstrap support for D3BG85 as seed ortholog is 100%.

Group of orthologs #335. Best score 189 bits
Score difference with first non-orthologous sequence - P.chabaudi:189 P.pallidum:112

Q4XMS5              	100.00%		D3BU31              	100.00%
Bootstrap support for Q4XMS5 as seed ortholog is 100%.
Bootstrap support for D3BU31 as seed ortholog is 100%.

Group of orthologs #336. Best score 189 bits
Score difference with first non-orthologous sequence - P.chabaudi:189 P.pallidum:189

Q4Y4J0              	100.00%		D3BFD7              	100.00%
Bootstrap support for Q4Y4J0 as seed ortholog is 100%.
Bootstrap support for D3BFD7 as seed ortholog is 100%.

Group of orthologs #337. Best score 188 bits
Score difference with first non-orthologous sequence - P.chabaudi:188 P.pallidum:188

Q4XX95              	100.00%		D3B4A0              	100.00%
Bootstrap support for Q4XX95 as seed ortholog is 100%.
Bootstrap support for D3B4A0 as seed ortholog is 100%.

Group of orthologs #338. Best score 188 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:147

Q4Y3E2              	100.00%		D3B0F6              	100.00%
Bootstrap support for Q4Y3E2 as seed ortholog is 100%.
Bootstrap support for D3B0F6 as seed ortholog is 100%.

Group of orthologs #339. Best score 187 bits
Score difference with first non-orthologous sequence - P.chabaudi:187 P.pallidum:187

Q4XRY5              	100.00%		D3BGB9              	100.00%
Bootstrap support for Q4XRY5 as seed ortholog is 100%.
Bootstrap support for D3BGB9 as seed ortholog is 100%.

Group of orthologs #340. Best score 187 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:83

Q4XZR3              	100.00%		D3B9T8              	100.00%
Bootstrap support for Q4XZR3 as seed ortholog is 96%.
Bootstrap support for D3B9T8 as seed ortholog is 95%.

Group of orthologs #341. Best score 187 bits
Score difference with first non-orthologous sequence - P.chabaudi:187 P.pallidum:187

Q4Y7S4              	100.00%		D3BVN2              	100.00%
Bootstrap support for Q4Y7S4 as seed ortholog is 100%.
Bootstrap support for D3BVN2 as seed ortholog is 100%.

Group of orthologs #342. Best score 186 bits
Score difference with first non-orthologous sequence - P.chabaudi:186 P.pallidum:186

Q4XLH3              	100.00%		D3AXB8              	100.00%
Bootstrap support for Q4XLH3 as seed ortholog is 100%.
Bootstrap support for D3AXB8 as seed ortholog is 100%.

Group of orthologs #343. Best score 185 bits
Score difference with first non-orthologous sequence - P.chabaudi:185 P.pallidum:185

Q4XZR6              	100.00%		D3BCL5              	100.00%
Bootstrap support for Q4XZR6 as seed ortholog is 100%.
Bootstrap support for D3BCL5 as seed ortholog is 100%.

Group of orthologs #344. Best score 183 bits
Score difference with first non-orthologous sequence - P.chabaudi:183 P.pallidum:183

Q4XN40              	100.00%		D3BA80              	100.00%
Bootstrap support for Q4XN40 as seed ortholog is 100%.
Bootstrap support for D3BA80 as seed ortholog is 100%.

Group of orthologs #345. Best score 183 bits
Score difference with first non-orthologous sequence - P.chabaudi:183 P.pallidum:183

Q4Y1F6              	100.00%		D3BKN6              	100.00%
Bootstrap support for Q4Y1F6 as seed ortholog is 100%.
Bootstrap support for D3BKN6 as seed ortholog is 100%.

Group of orthologs #346. Best score 181 bits
Score difference with first non-orthologous sequence - P.chabaudi:138 P.pallidum:67

Q4XXZ4              	100.00%		D3B2M5              	100.00%
Bootstrap support for Q4XXZ4 as seed ortholog is 100%.
Bootstrap support for D3B2M5 as seed ortholog is 99%.

Group of orthologs #347. Best score 180 bits
Score difference with first non-orthologous sequence - P.chabaudi:180 P.pallidum:75

Q4XYD2              	100.00%		D3BVI8              	100.00%
Q4XS11              	60.67%		D3AW75              	13.35%
Q4XGA5              	60.02%		D3BBJ2              	10.16%
                    	       		D3BQP1              	8.53%
Bootstrap support for Q4XYD2 as seed ortholog is 100%.
Bootstrap support for D3BVI8 as seed ortholog is 98%.

Group of orthologs #348. Best score 180 bits
Score difference with first non-orthologous sequence - P.chabaudi:180 P.pallidum:180

Q4XSF0              	100.00%		D3BFN7              	100.00%
Bootstrap support for Q4XSF0 as seed ortholog is 100%.
Bootstrap support for D3BFN7 as seed ortholog is 100%.

Group of orthologs #349. Best score 179 bits
Score difference with first non-orthologous sequence - P.chabaudi:179 P.pallidum:59

Q4XPJ4              	100.00%		D3B0T3              	100.00%
Bootstrap support for Q4XPJ4 as seed ortholog is 100%.
Bootstrap support for D3B0T3 as seed ortholog is 98%.

Group of orthologs #350. Best score 179 bits
Score difference with first non-orthologous sequence - P.chabaudi:21 P.pallidum:70

Q4XFV5              	100.00%		D3BGZ5              	100.00%
Bootstrap support for Q4XFV5 as seed ortholog is 65%.
Alternative seed ortholog is Q4XFD2 (21 bits away from this cluster)
Bootstrap support for D3BGZ5 as seed ortholog is 98%.

Group of orthologs #351. Best score 178 bits
Score difference with first non-orthologous sequence - P.chabaudi:178 P.pallidum:178

Q4XR41              	100.00%		D3AXW3              	100.00%
Bootstrap support for Q4XR41 as seed ortholog is 100%.
Bootstrap support for D3AXW3 as seed ortholog is 100%.

Group of orthologs #352. Best score 178 bits
Score difference with first non-orthologous sequence - P.chabaudi:178 P.pallidum:178

Q4XZ46              	100.00%		D3AY97              	100.00%
Bootstrap support for Q4XZ46 as seed ortholog is 100%.
Bootstrap support for D3AY97 as seed ortholog is 100%.

Group of orthologs #353. Best score 178 bits
Score difference with first non-orthologous sequence - P.chabaudi:178 P.pallidum:178

Q4Y3Q4              	100.00%		D3BK61              	100.00%
Bootstrap support for Q4Y3Q4 as seed ortholog is 100%.
Bootstrap support for D3BK61 as seed ortholog is 100%.

Group of orthologs #354. Best score 177 bits
Score difference with first non-orthologous sequence - P.chabaudi:177 P.pallidum:56

Q4Y0C9              	100.00%		D3B6H6              	100.00%
Bootstrap support for Q4Y0C9 as seed ortholog is 100%.
Bootstrap support for D3B6H6 as seed ortholog is 99%.

Group of orthologs #355. Best score 176 bits
Score difference with first non-orthologous sequence - P.chabaudi:176 P.pallidum:176

Q4XLP0              	100.00%		D3B0C3              	100.00%
Q4XHL2              	45.00%		
Bootstrap support for Q4XLP0 as seed ortholog is 100%.
Bootstrap support for D3B0C3 as seed ortholog is 100%.

Group of orthologs #356. Best score 176 bits
Score difference with first non-orthologous sequence - P.chabaudi:176 P.pallidum:176

Q4Y906              	100.00%		D3B1N8              	100.00%
Bootstrap support for Q4Y906 as seed ortholog is 100%.
Bootstrap support for D3B1N8 as seed ortholog is 100%.

Group of orthologs #357. Best score 176 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:176

Q4XXF3              	100.00%		D3BSY5              	100.00%
Bootstrap support for Q4XXF3 as seed ortholog is 93%.
Bootstrap support for D3BSY5 as seed ortholog is 100%.

Group of orthologs #358. Best score 175 bits
Score difference with first non-orthologous sequence - P.chabaudi:175 P.pallidum:175

Q4XFJ9              	100.00%		D3BN51              	100.00%
Bootstrap support for Q4XFJ9 as seed ortholog is 100%.
Bootstrap support for D3BN51 as seed ortholog is 100%.

Group of orthologs #359. Best score 175 bits
Score difference with first non-orthologous sequence - P.chabaudi:175 P.pallidum:175

Q4XSD8              	100.00%		D3BC80              	100.00%
Bootstrap support for Q4XSD8 as seed ortholog is 100%.
Bootstrap support for D3BC80 as seed ortholog is 100%.

Group of orthologs #360. Best score 174 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.pallidum:84

Q4XZS5              	100.00%		D3BIA4              	100.00%
Bootstrap support for Q4XZS5 as seed ortholog is 100%.
Bootstrap support for D3BIA4 as seed ortholog is 98%.

Group of orthologs #361. Best score 173 bits
Score difference with first non-orthologous sequence - P.chabaudi:173 P.pallidum:173

Q4XSX2              	100.00%		D3B5J6              	100.00%
Q4X7Y2              	30.90%		
Bootstrap support for Q4XSX2 as seed ortholog is 100%.
Bootstrap support for D3B5J6 as seed ortholog is 100%.

Group of orthologs #362. Best score 173 bits
Score difference with first non-orthologous sequence - P.chabaudi:173 P.pallidum:173

Q4XM07              	100.00%		D3BNG5              	100.00%
Bootstrap support for Q4XM07 as seed ortholog is 100%.
Bootstrap support for D3BNG5 as seed ortholog is 100%.

Group of orthologs #363. Best score 173 bits
Score difference with first non-orthologous sequence - P.chabaudi:173 P.pallidum:124

Q4Y2R2              	100.00%		D3BL27              	100.00%
Bootstrap support for Q4Y2R2 as seed ortholog is 100%.
Bootstrap support for D3BL27 as seed ortholog is 100%.

Group of orthologs #364. Best score 172 bits
Score difference with first non-orthologous sequence - P.chabaudi:172 P.pallidum:172

Q4XQ77              	100.00%		D3AZ84              	100.00%
                    	       		D3BV70              	11.84%
Bootstrap support for Q4XQ77 as seed ortholog is 100%.
Bootstrap support for D3AZ84 as seed ortholog is 100%.

Group of orthologs #365. Best score 172 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.pallidum:3

Q4XQ36              	100.00%		D3BAM4              	100.00%
                    	       		D3BCH4              	5.88%
Bootstrap support for Q4XQ36 as seed ortholog is 85%.
Bootstrap support for D3BAM4 as seed ortholog is 67%.
Alternative seed ortholog is D3BMK5 (3 bits away from this cluster)

Group of orthologs #366. Best score 172 bits
Score difference with first non-orthologous sequence - P.chabaudi:172 P.pallidum:172

Q4Y163              	100.00%		D3BKX3              	100.00%
Bootstrap support for Q4Y163 as seed ortholog is 100%.
Bootstrap support for D3BKX3 as seed ortholog is 100%.

Group of orthologs #367. Best score 171 bits
Score difference with first non-orthologous sequence - P.chabaudi:171 P.pallidum:171

Q4XRL4              	100.00%		D3BL07              	100.00%
                    	       		D3B3C1              	12.47%
Bootstrap support for Q4XRL4 as seed ortholog is 100%.
Bootstrap support for D3BL07 as seed ortholog is 100%.

Group of orthologs #368. Best score 171 bits
Score difference with first non-orthologous sequence - P.chabaudi:171 P.pallidum:171

Q4XZB6              	100.00%		D3BD97              	100.00%
Bootstrap support for Q4XZB6 as seed ortholog is 100%.
Bootstrap support for D3BD97 as seed ortholog is 100%.

Group of orthologs #369. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.pallidum:170

Q4XSM0              	100.00%		D3AW40              	100.00%
                    	       		D3B7M2              	24.96%
Bootstrap support for Q4XSM0 as seed ortholog is 100%.
Bootstrap support for D3AW40 as seed ortholog is 100%.

Group of orthologs #370. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.pallidum:43

Q4Y245              	100.00%		D3B1Z1              	100.00%
Q4XFT1              	85.44%		
Bootstrap support for Q4Y245 as seed ortholog is 100%.
Bootstrap support for D3B1Z1 as seed ortholog is 86%.

Group of orthologs #371. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.pallidum:170

Q4X5Z8              	100.00%		D3AXB4              	100.00%
Bootstrap support for Q4X5Z8 as seed ortholog is 100%.
Bootstrap support for D3AXB4 as seed ortholog is 100%.

Group of orthologs #372. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.pallidum:170

Q4XY04              	100.00%		D3BCH5              	100.00%
Bootstrap support for Q4XY04 as seed ortholog is 100%.
Bootstrap support for D3BCH5 as seed ortholog is 100%.

Group of orthologs #373. Best score 169 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.pallidum:169

Q4XN37              	100.00%		D3B465              	100.00%
Bootstrap support for Q4XN37 as seed ortholog is 100%.
Bootstrap support for D3B465 as seed ortholog is 100%.

Group of orthologs #374. Best score 169 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.pallidum:169

Q4XYL8              	100.00%		D3BD59              	100.00%
Bootstrap support for Q4XYL8 as seed ortholog is 100%.
Bootstrap support for D3BD59 as seed ortholog is 100%.

Group of orthologs #375. Best score 169 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.pallidum:169

Q4XWC6              	100.00%		D3BTS0              	100.00%
Bootstrap support for Q4XWC6 as seed ortholog is 100%.
Bootstrap support for D3BTS0 as seed ortholog is 100%.

Group of orthologs #376. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.pallidum:168

Q4Y1T6              	100.00%		D3BCN3              	100.00%
Q4XJ63              	44.67%		
Bootstrap support for Q4Y1T6 as seed ortholog is 100%.
Bootstrap support for D3BCN3 as seed ortholog is 100%.

Group of orthologs #377. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.pallidum:168

Q4XN04              	100.00%		D3B0K6              	100.00%
Bootstrap support for Q4XN04 as seed ortholog is 100%.
Bootstrap support for D3B0K6 as seed ortholog is 100%.

Group of orthologs #378. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:65

Q4XLG8              	100.00%		D3BQS8              	100.00%
Bootstrap support for Q4XLG8 as seed ortholog is 100%.
Bootstrap support for D3BQS8 as seed ortholog is 99%.

Group of orthologs #379. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.pallidum:3

Q4XUY0              	100.00%		D3BIF6              	100.00%
Bootstrap support for Q4XUY0 as seed ortholog is 100%.
Bootstrap support for D3BIF6 as seed ortholog is 68%.
Alternative seed ortholog is D3B2G2 (3 bits away from this cluster)

Group of orthologs #380. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.pallidum:168

Q4Y559              	100.00%		D3BDY0              	100.00%
Bootstrap support for Q4Y559 as seed ortholog is 100%.
Bootstrap support for D3BDY0 as seed ortholog is 100%.

Group of orthologs #381. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.pallidum:168

Q4Y5D1              	100.00%		D3BPP6              	100.00%
Bootstrap support for Q4Y5D1 as seed ortholog is 100%.
Bootstrap support for D3BPP6 as seed ortholog is 100%.

Group of orthologs #382. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.pallidum:77

Q4Y922              	100.00%		D3BR25              	100.00%
Bootstrap support for Q4Y922 as seed ortholog is 100%.
Bootstrap support for D3BR25 as seed ortholog is 66%.
Alternative seed ortholog is D3BDG1 (77 bits away from this cluster)

Group of orthologs #383. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:166 P.pallidum:49

Q4XZE5              	100.00%		D3BUH9              	100.00%
                    	       		D3AWU2              	15.18%
                    	       		D3AYR9              	13.22%
                    	       		D3BKE2              	12.67%
Bootstrap support for Q4XZE5 as seed ortholog is 100%.
Bootstrap support for D3BUH9 as seed ortholog is 88%.

Group of orthologs #384. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:166 P.pallidum:166

Q4XSB6              	100.00%		D3BHJ3              	100.00%
Bootstrap support for Q4XSB6 as seed ortholog is 100%.
Bootstrap support for D3BHJ3 as seed ortholog is 100%.

Group of orthologs #385. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:166 P.pallidum:166

Q4XV58              	100.00%		D3BIN1              	100.00%
Bootstrap support for Q4XV58 as seed ortholog is 100%.
Bootstrap support for D3BIN1 as seed ortholog is 100%.

Group of orthologs #386. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:165 P.pallidum:165

Q4XL21              	100.00%		D3AYG6              	100.00%
Bootstrap support for Q4XL21 as seed ortholog is 100%.
Bootstrap support for D3AYG6 as seed ortholog is 100%.

Group of orthologs #387. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:165 P.pallidum:165

Q4XUN8              	100.00%		D3B6S6              	100.00%
Bootstrap support for Q4XUN8 as seed ortholog is 100%.
Bootstrap support for D3B6S6 as seed ortholog is 100%.

Group of orthologs #388. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:165 P.pallidum:165

Q4Y2N2              	100.00%		D3B1L8              	100.00%
Bootstrap support for Q4Y2N2 as seed ortholog is 100%.
Bootstrap support for D3B1L8 as seed ortholog is 100%.

Group of orthologs #389. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:164 P.pallidum:164

Q4XM05              	100.00%		D3BEH6              	100.00%
Q4XDY4              	39.92%		
Bootstrap support for Q4XM05 as seed ortholog is 100%.
Bootstrap support for D3BEH6 as seed ortholog is 100%.

Group of orthologs #390. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:164 P.pallidum:164

Q4Y341              	100.00%		D3B7M3              	100.00%
Q4X6A3              	83.14%		
Bootstrap support for Q4Y341 as seed ortholog is 100%.
Bootstrap support for D3B7M3 as seed ortholog is 100%.

Group of orthologs #391. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:164 P.pallidum:164

Q4Y0H5              	100.00%		D3BT90              	100.00%
                    	       		D3AXS4              	10.81%
Bootstrap support for Q4Y0H5 as seed ortholog is 100%.
Bootstrap support for D3BT90 as seed ortholog is 100%.

Group of orthologs #392. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.pallidum:164

Q4XZM0              	100.00%		D3AZF9              	100.00%
Bootstrap support for Q4XZM0 as seed ortholog is 99%.
Bootstrap support for D3AZF9 as seed ortholog is 100%.

Group of orthologs #393. Best score 163 bits
Score difference with first non-orthologous sequence - P.chabaudi:163 P.pallidum:163

Q4XUS6              	100.00%		D3B0C2              	100.00%
                    	       		D3AZN2              	52.04%
Bootstrap support for Q4XUS6 as seed ortholog is 100%.
Bootstrap support for D3B0C2 as seed ortholog is 100%.

Group of orthologs #394. Best score 163 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:163

Q4Y066              	100.00%		D3AWL9              	100.00%
Bootstrap support for Q4Y066 as seed ortholog is 94%.
Bootstrap support for D3AWL9 as seed ortholog is 100%.

Group of orthologs #395. Best score 163 bits
Score difference with first non-orthologous sequence - P.chabaudi:163 P.pallidum:163

Q4Y133              	100.00%		D3B7J9              	100.00%
Bootstrap support for Q4Y133 as seed ortholog is 100%.
Bootstrap support for D3B7J9 as seed ortholog is 100%.

Group of orthologs #396. Best score 163 bits
Score difference with first non-orthologous sequence - P.chabaudi:163 P.pallidum:163

Q4XYS2              	100.00%		D3BBM0              	100.00%
Bootstrap support for Q4XYS2 as seed ortholog is 100%.
Bootstrap support for D3BBM0 as seed ortholog is 100%.

Group of orthologs #397. Best score 163 bits
Score difference with first non-orthologous sequence - P.chabaudi:163 P.pallidum:163

Q4Y061              	100.00%		D3BMQ1              	100.00%
Bootstrap support for Q4Y061 as seed ortholog is 100%.
Bootstrap support for D3BMQ1 as seed ortholog is 100%.

Group of orthologs #398. Best score 163 bits
Score difference with first non-orthologous sequence - P.chabaudi:163 P.pallidum:163

Q4Y2C7              	100.00%		D3BRH9              	100.00%
Bootstrap support for Q4Y2C7 as seed ortholog is 100%.
Bootstrap support for D3BRH9 as seed ortholog is 100%.

Group of orthologs #399. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:162

Q4Y6X8              	100.00%		D3BUI9              	100.00%
                    	       		D3BCF4              	15.56%
Bootstrap support for Q4Y6X8 as seed ortholog is 97%.
Bootstrap support for D3BUI9 as seed ortholog is 100%.

Group of orthologs #400. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:60 P.pallidum:162

Q4X6M2              	100.00%		D3BPF6              	100.00%
Bootstrap support for Q4X6M2 as seed ortholog is 99%.
Bootstrap support for D3BPF6 as seed ortholog is 100%.

Group of orthologs #401. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:117 P.pallidum:91

Q4XMS8              	100.00%		D3BFK6              	100.00%
Bootstrap support for Q4XMS8 as seed ortholog is 99%.
Bootstrap support for D3BFK6 as seed ortholog is 87%.

Group of orthologs #402. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:162 P.pallidum:162

Q4Y440              	100.00%		D3B6L1              	100.00%
Bootstrap support for Q4Y440 as seed ortholog is 100%.
Bootstrap support for D3B6L1 as seed ortholog is 100%.

Group of orthologs #403. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:19 P.pallidum:162

Q4Y8C2              	100.00%		D3BTS5              	100.00%
Bootstrap support for Q4Y8C2 as seed ortholog is 72%.
Alternative seed ortholog is Q4XQD5 (19 bits away from this cluster)
Bootstrap support for D3BTS5 as seed ortholog is 100%.

Group of orthologs #404. Best score 161 bits
Score difference with first non-orthologous sequence - P.chabaudi:161 P.pallidum:161

Q4XF37              	100.00%		D3BSM2              	100.00%
Bootstrap support for Q4XF37 as seed ortholog is 100%.
Bootstrap support for D3BSM2 as seed ortholog is 100%.

Group of orthologs #405. Best score 161 bits
Score difference with first non-orthologous sequence - P.chabaudi:4 P.pallidum:161

Q4XTN5              	100.00%		D3BI96              	100.00%
Bootstrap support for Q4XTN5 as seed ortholog is 52%.
Alternative seed ortholog is Q4Y2T1 (4 bits away from this cluster)
Bootstrap support for D3BI96 as seed ortholog is 100%.

Group of orthologs #406. Best score 161 bits
Score difference with first non-orthologous sequence - P.chabaudi:161 P.pallidum:161

Q4Y0J4              	100.00%		D3BNZ1              	100.00%
Bootstrap support for Q4Y0J4 as seed ortholog is 100%.
Bootstrap support for D3BNZ1 as seed ortholog is 100%.

Group of orthologs #407. Best score 160 bits
Score difference with first non-orthologous sequence - P.chabaudi:160 P.pallidum:160

Q4XX42              	100.00%		D3B3R7              	100.00%
Bootstrap support for Q4XX42 as seed ortholog is 100%.
Bootstrap support for D3B3R7 as seed ortholog is 100%.

Group of orthologs #408. Best score 159 bits
Score difference with first non-orthologous sequence - P.chabaudi:159 P.pallidum:159

Q4Y658              	100.00%		D3BIR6              	100.00%
Bootstrap support for Q4Y658 as seed ortholog is 100%.
Bootstrap support for D3BIR6 as seed ortholog is 100%.

Group of orthologs #409. Best score 158 bits
Score difference with first non-orthologous sequence - P.chabaudi:158 P.pallidum:158

Q4Y385              	100.00%		D3AXH6              	100.00%
Q4XFZ3              	52.90%		
Bootstrap support for Q4Y385 as seed ortholog is 100%.
Bootstrap support for D3AXH6 as seed ortholog is 100%.

Group of orthologs #410. Best score 158 bits
Score difference with first non-orthologous sequence - P.chabaudi:158 P.pallidum:158

Q4XSH5              	100.00%		D3BI16              	100.00%
                    	       		D3BS67              	28.21%
Bootstrap support for Q4XSH5 as seed ortholog is 100%.
Bootstrap support for D3BI16 as seed ortholog is 100%.

Group of orthologs #411. Best score 158 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.pallidum:60

Q4Y7G6              	100.00%		D3B850              	100.00%
                    	       		D3AXD1              	39.46%
Bootstrap support for Q4Y7G6 as seed ortholog is 99%.
Bootstrap support for D3B850 as seed ortholog is 99%.

Group of orthologs #412. Best score 158 bits
Score difference with first non-orthologous sequence - P.chabaudi:158 P.pallidum:158

Q4X4J9              	100.00%		D3BBK8              	100.00%
Bootstrap support for Q4X4J9 as seed ortholog is 100%.
Bootstrap support for D3BBK8 as seed ortholog is 100%.

Group of orthologs #413. Best score 157 bits
Score difference with first non-orthologous sequence - P.chabaudi:6 P.pallidum:157

Q4Y529              	100.00%		D3BEU0              	100.00%
Bootstrap support for Q4Y529 as seed ortholog is 99%.
Bootstrap support for D3BEU0 as seed ortholog is 100%.

Group of orthologs #414. Best score 157 bits
Score difference with first non-orthologous sequence - P.chabaudi:157 P.pallidum:157

Q4XZD8              	100.00%		D3BLV1              	100.00%
Bootstrap support for Q4XZD8 as seed ortholog is 100%.
Bootstrap support for D3BLV1 as seed ortholog is 100%.

Group of orthologs #415. Best score 156 bits
Score difference with first non-orthologous sequence - P.chabaudi:156 P.pallidum:156

Q4XV54              	100.00%		D3B6Y3              	100.00%
Bootstrap support for Q4XV54 as seed ortholog is 100%.
Bootstrap support for D3B6Y3 as seed ortholog is 100%.

Group of orthologs #416. Best score 155 bits
Score difference with first non-orthologous sequence - P.chabaudi:155 P.pallidum:155

Q4XXP6              	100.00%		D3B972              	100.00%
Bootstrap support for Q4XXP6 as seed ortholog is 100%.
Bootstrap support for D3B972 as seed ortholog is 100%.

Group of orthologs #417. Best score 155 bits
Score difference with first non-orthologous sequence - P.chabaudi:155 P.pallidum:155

Q4Y1M6              	100.00%		D3BT09              	100.00%
Bootstrap support for Q4Y1M6 as seed ortholog is 100%.
Bootstrap support for D3BT09 as seed ortholog is 100%.

Group of orthologs #418. Best score 155 bits
Score difference with first non-orthologous sequence - P.chabaudi:155 P.pallidum:155

Q4Y1N5              	100.00%		D3BTM7              	100.00%
Bootstrap support for Q4Y1N5 as seed ortholog is 100%.
Bootstrap support for D3BTM7 as seed ortholog is 100%.

Group of orthologs #419. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:154 P.pallidum:154

Q4XEK5              	100.00%		D3BB37              	100.00%
Q4XWS1              	58.29%		
Bootstrap support for Q4XEK5 as seed ortholog is 100%.
Bootstrap support for D3BB37 as seed ortholog is 100%.

Group of orthologs #420. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:154 P.pallidum:154

Q4XVZ8              	100.00%		D3B5Y1              	100.00%
Bootstrap support for Q4XVZ8 as seed ortholog is 100%.
Bootstrap support for D3B5Y1 as seed ortholog is 100%.

Group of orthologs #421. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:154 P.pallidum:154

Q4XW09              	100.00%		D3BK44              	100.00%
Bootstrap support for Q4XW09 as seed ortholog is 100%.
Bootstrap support for D3BK44 as seed ortholog is 100%.

Group of orthologs #422. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:154 P.pallidum:98

Q4Y8C8              	100.00%		D3BEP4              	100.00%
Bootstrap support for Q4Y8C8 as seed ortholog is 100%.
Bootstrap support for D3BEP4 as seed ortholog is 99%.

Group of orthologs #423. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.pallidum:24

Q4XNQ1              	100.00%		D3BJ60              	100.00%
                    	       		D3AXL6              	36.60%
                    	       		D3BB03              	28.16%
                    	       		D3BL12              	27.14%
                    	       		D3BUN6              	26.91%
                    	       		D3BKJ7              	24.06%
                    	       		D3BB13              	22.46%
                    	       		D3BCE4              	10.83%
                    	       		D3B314              	7.64%
Bootstrap support for Q4XNQ1 as seed ortholog is 100%.
Bootstrap support for D3BJ60 as seed ortholog is 74%.
Alternative seed ortholog is D3B6N0 (24 bits away from this cluster)

Group of orthologs #424. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.pallidum:59

Q4XMU5              	100.00%		D3AYW2              	100.00%
Bootstrap support for Q4XMU5 as seed ortholog is 100%.
Bootstrap support for D3AYW2 as seed ortholog is 86%.

Group of orthologs #425. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.pallidum:153

Q4XT56              	100.00%		D3AVH8              	100.00%
Bootstrap support for Q4XT56 as seed ortholog is 100%.
Bootstrap support for D3AVH8 as seed ortholog is 100%.

Group of orthologs #426. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.pallidum:153

Q4Y487              	100.00%		D3AZD5              	100.00%
Bootstrap support for Q4Y487 as seed ortholog is 100%.
Bootstrap support for D3AZD5 as seed ortholog is 100%.

Group of orthologs #427. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.pallidum:153

Q4XMW2              	100.00%		D3BJY4              	100.00%
Bootstrap support for Q4XMW2 as seed ortholog is 100%.
Bootstrap support for D3BJY4 as seed ortholog is 100%.

Group of orthologs #428. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.pallidum:153

Q4Y874              	100.00%		D3BBL0              	100.00%
Bootstrap support for Q4Y874 as seed ortholog is 100%.
Bootstrap support for D3BBL0 as seed ortholog is 100%.

Group of orthologs #429. Best score 152 bits
Score difference with first non-orthologous sequence - P.chabaudi:152 P.pallidum:152

Q4Y335              	100.00%		D3AWC6              	100.00%
Bootstrap support for Q4Y335 as seed ortholog is 100%.
Bootstrap support for D3AWC6 as seed ortholog is 100%.

Group of orthologs #430. Best score 152 bits
Score difference with first non-orthologous sequence - P.chabaudi:152 P.pallidum:152

Q4XZ09              	100.00%		D3B227              	100.00%
Bootstrap support for Q4XZ09 as seed ortholog is 100%.
Bootstrap support for D3B227 as seed ortholog is 100%.

Group of orthologs #431. Best score 152 bits
Score difference with first non-orthologous sequence - P.chabaudi:152 P.pallidum:152

Q4Y873              	100.00%		D3AWV5              	100.00%
Bootstrap support for Q4Y873 as seed ortholog is 100%.
Bootstrap support for D3AWV5 as seed ortholog is 100%.

Group of orthologs #432. Best score 152 bits
Score difference with first non-orthologous sequence - P.chabaudi:152 P.pallidum:152

Q4Y7X1              	100.00%		D3B439              	100.00%
Bootstrap support for Q4Y7X1 as seed ortholog is 100%.
Bootstrap support for D3B439 as seed ortholog is 100%.

Group of orthologs #433. Best score 150 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.pallidum:150

Q4XT79              	100.00%		D3B061              	100.00%
Q4X2W2              	54.81%		
Bootstrap support for Q4XT79 as seed ortholog is 100%.
Bootstrap support for D3B061 as seed ortholog is 100%.

Group of orthologs #434. Best score 150 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.pallidum:150

Q4XPL9              	100.00%		D3BQX1              	100.00%
Bootstrap support for Q4XPL9 as seed ortholog is 100%.
Bootstrap support for D3BQX1 as seed ortholog is 100%.

Group of orthologs #435. Best score 150 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.pallidum:150

Q4XXD4              	100.00%		D3BQU5              	100.00%
Bootstrap support for Q4XXD4 as seed ortholog is 100%.
Bootstrap support for D3BQU5 as seed ortholog is 100%.

Group of orthologs #436. Best score 149 bits
Score difference with first non-orthologous sequence - P.chabaudi:149 P.pallidum:149

Q4XSM3              	100.00%		D3B437              	100.00%
Bootstrap support for Q4XSM3 as seed ortholog is 100%.
Bootstrap support for D3B437 as seed ortholog is 100%.

Group of orthologs #437. Best score 149 bits
Score difference with first non-orthologous sequence - P.chabaudi:149 P.pallidum:80

Q4XHZ1              	100.00%		D3BKA2              	100.00%
Bootstrap support for Q4XHZ1 as seed ortholog is 100%.
Bootstrap support for D3BKA2 as seed ortholog is 99%.

Group of orthologs #438. Best score 149 bits
Score difference with first non-orthologous sequence - P.chabaudi:149 P.pallidum:54

Q4Y0B2              	100.00%		D3B822              	100.00%
Bootstrap support for Q4Y0B2 as seed ortholog is 100%.
Bootstrap support for D3B822 as seed ortholog is 61%.
Alternative seed ortholog is D3B8Y2 (54 bits away from this cluster)

Group of orthologs #439. Best score 148 bits
Score difference with first non-orthologous sequence - P.chabaudi:148 P.pallidum:148

Q4Y366              	100.00%		D3BGI1              	100.00%
                    	       		D3BSZ1              	20.64%
                    	       		D3B8C9              	16.26%
Bootstrap support for Q4Y366 as seed ortholog is 100%.
Bootstrap support for D3BGI1 as seed ortholog is 100%.

Group of orthologs #440. Best score 148 bits
Score difference with first non-orthologous sequence - P.chabaudi:28 P.pallidum:38

Q4XHT8              	100.00%		D3AXZ9              	100.00%
Bootstrap support for Q4XHT8 as seed ortholog is 84%.
Bootstrap support for D3AXZ9 as seed ortholog is 80%.

Group of orthologs #441. Best score 148 bits
Score difference with first non-orthologous sequence - P.chabaudi:12 P.pallidum:17

Q4XWE0              	100.00%		D3AZF3              	100.00%
Bootstrap support for Q4XWE0 as seed ortholog is 64%.
Alternative seed ortholog is Q4XNR1 (12 bits away from this cluster)
Bootstrap support for D3AZF3 as seed ortholog is 65%.
Alternative seed ortholog is D3B8J0 (17 bits away from this cluster)

Group of orthologs #442. Best score 148 bits
Score difference with first non-orthologous sequence - P.chabaudi:148 P.pallidum:84

Q4XQB3              	100.00%		D3BLA0              	100.00%
Bootstrap support for Q4XQB3 as seed ortholog is 100%.
Bootstrap support for D3BLA0 as seed ortholog is 99%.

Group of orthologs #443. Best score 148 bits
Score difference with first non-orthologous sequence - P.chabaudi:148 P.pallidum:148

Q4XLW2              	100.00%		D3BTM5              	100.00%
Bootstrap support for Q4XLW2 as seed ortholog is 100%.
Bootstrap support for D3BTM5 as seed ortholog is 100%.

Group of orthologs #444. Best score 146 bits
Score difference with first non-orthologous sequence - P.chabaudi:146 P.pallidum:146

Q4XXU6              	100.00%		D3BAR1              	100.00%
Q4XAG5              	56.46%		
Bootstrap support for Q4XXU6 as seed ortholog is 100%.
Bootstrap support for D3BAR1 as seed ortholog is 100%.

Group of orthologs #445. Best score 146 bits
Score difference with first non-orthologous sequence - P.chabaudi:146 P.pallidum:146

Q4XI76              	100.00%		D3B206              	100.00%
Bootstrap support for Q4XI76 as seed ortholog is 100%.
Bootstrap support for D3B206 as seed ortholog is 100%.

Group of orthologs #446. Best score 146 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.pallidum:42

Q4Y0G5              	100.00%		D3B6C9              	100.00%
Bootstrap support for Q4Y0G5 as seed ortholog is 99%.
Bootstrap support for D3B6C9 as seed ortholog is 97%.

Group of orthologs #447. Best score 146 bits
Score difference with first non-orthologous sequence - P.chabaudi:146 P.pallidum:146

Q4Y5R0              	100.00%		D3BKA5              	100.00%
Bootstrap support for Q4Y5R0 as seed ortholog is 100%.
Bootstrap support for D3BKA5 as seed ortholog is 100%.

Group of orthologs #448. Best score 145 bits
Score difference with first non-orthologous sequence - P.chabaudi:145 P.pallidum:145

Q4XX80              	100.00%		D3B334              	100.00%
Bootstrap support for Q4XX80 as seed ortholog is 100%.
Bootstrap support for D3B334 as seed ortholog is 100%.

Group of orthologs #449. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4Y7U3              	100.00%		D3BRA7              	100.00%
                    	       		D3BA06              	9.83%
                    	       		D3BQ35              	9.03%
Bootstrap support for Q4Y7U3 as seed ortholog is 100%.
Bootstrap support for D3BRA7 as seed ortholog is 100%.

Group of orthologs #450. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4XP30              	100.00%		D3BDI3              	100.00%
                    	       		D3B568              	10.27%
Bootstrap support for Q4XP30 as seed ortholog is 100%.
Bootstrap support for D3BDI3 as seed ortholog is 100%.

Group of orthologs #451. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4XVK1              	100.00%		D3AVQ5              	100.00%
Bootstrap support for Q4XVK1 as seed ortholog is 100%.
Bootstrap support for D3AVQ5 as seed ortholog is 100%.

Group of orthologs #452. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4Y2J5              	100.00%		D3AWD3              	100.00%
Bootstrap support for Q4Y2J5 as seed ortholog is 100%.
Bootstrap support for D3AWD3 as seed ortholog is 100%.

Group of orthologs #453. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4XKX2              	100.00%		D3BN47              	100.00%
Bootstrap support for Q4XKX2 as seed ortholog is 100%.
Bootstrap support for D3BN47 as seed ortholog is 100%.

Group of orthologs #454. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4XZG4              	100.00%		D3BM11              	100.00%
Bootstrap support for Q4XZG4 as seed ortholog is 100%.
Bootstrap support for D3BM11 as seed ortholog is 100%.

Group of orthologs #455. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:26

Q4Y3R9              	100.00%		D3BK33              	100.00%
Bootstrap support for Q4Y3R9 as seed ortholog is 100%.
Bootstrap support for D3BK33 as seed ortholog is 90%.

Group of orthologs #456. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.pallidum:144

Q4Y3P8              	100.00%		D3BVK2              	100.00%
Bootstrap support for Q4Y3P8 as seed ortholog is 100%.
Bootstrap support for D3BVK2 as seed ortholog is 100%.

Group of orthologs #457. Best score 143 bits
Score difference with first non-orthologous sequence - P.chabaudi:143 P.pallidum:143

Q4X4Z0              	100.00%		D3BKS2              	100.00%
Bootstrap support for Q4X4Z0 as seed ortholog is 100%.
Bootstrap support for D3BKS2 as seed ortholog is 100%.

Group of orthologs #458. Best score 143 bits
Score difference with first non-orthologous sequence - P.chabaudi:143 P.pallidum:28

Q4Y5N1              	100.00%		D3B2B1              	100.00%
Bootstrap support for Q4Y5N1 as seed ortholog is 100%.
Bootstrap support for D3B2B1 as seed ortholog is 80%.

Group of orthologs #459. Best score 142 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.pallidum:142

Q4XW21              	100.00%		D3B5X8              	100.00%
                    	       		D3B4E5              	12.98%
Bootstrap support for Q4XW21 as seed ortholog is 100%.
Bootstrap support for D3B5X8 as seed ortholog is 100%.

Group of orthologs #460. Best score 142 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.pallidum:142

Q4Y564              	100.00%		D3AZ34              	100.00%
Bootstrap support for Q4Y564 as seed ortholog is 100%.
Bootstrap support for D3AZ34 as seed ortholog is 100%.

Group of orthologs #461. Best score 142 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.pallidum:142

Q4XM56              	100.00%		D3BS88              	100.00%
Bootstrap support for Q4XM56 as seed ortholog is 100%.
Bootstrap support for D3BS88 as seed ortholog is 100%.

Group of orthologs #462. Best score 142 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.pallidum:142

Q4Y1E8              	100.00%		D3BTD9              	100.00%
Bootstrap support for Q4Y1E8 as seed ortholog is 100%.
Bootstrap support for D3BTD9 as seed ortholog is 100%.

Group of orthologs #463. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:15 P.pallidum:47

Q4Y4F6              	100.00%		D3B9Q5              	100.00%
                    	       		D3B9Q6              	39.52%
                    	       		D3BE24              	19.54%
Bootstrap support for Q4Y4F6 as seed ortholog is 67%.
Alternative seed ortholog is Q4Y196 (15 bits away from this cluster)
Bootstrap support for D3B9Q5 as seed ortholog is 90%.

Group of orthologs #464. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:141 P.pallidum:141

Q4XZ68              	100.00%		D3BKB6              	100.00%
Q4X8B1              	30.92%		
Bootstrap support for Q4XZ68 as seed ortholog is 100%.
Bootstrap support for D3BKB6 as seed ortholog is 100%.

Group of orthologs #465. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:34

Q4X2E6              	100.00%		D3BU73              	100.00%
Bootstrap support for Q4X2E6 as seed ortholog is 99%.
Bootstrap support for D3BU73 as seed ortholog is 98%.

Group of orthologs #466. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:141 P.pallidum:141

Q4Y088              	100.00%		D3B586              	100.00%
Bootstrap support for Q4Y088 as seed ortholog is 100%.
Bootstrap support for D3B586 as seed ortholog is 100%.

Group of orthologs #467. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:141 P.pallidum:141

Q4Y7X0              	100.00%		D3B544              	100.00%
Bootstrap support for Q4Y7X0 as seed ortholog is 100%.
Bootstrap support for D3B544 as seed ortholog is 100%.

Group of orthologs #468. Best score 140 bits
Score difference with first non-orthologous sequence - P.chabaudi:140 P.pallidum:140

Q4XA32              	100.00%		D3B7U1              	100.00%
Bootstrap support for Q4XA32 as seed ortholog is 100%.
Bootstrap support for D3B7U1 as seed ortholog is 100%.

Group of orthologs #469. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.pallidum:139

Q4XXS7              	100.00%		D3BE43              	100.00%
                    	       		D3B545              	56.69%
                    	       		D3AVQ2              	56.07%
                    	       		D3AY31              	35.92%
                    	       		D3BKF0              	30.63%
                    	       		D3AVW9              	8.63%
                    	       		D3BQN8              	8.36%
Bootstrap support for Q4XXS7 as seed ortholog is 100%.
Bootstrap support for D3BE43 as seed ortholog is 100%.

Group of orthologs #470. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.pallidum:90

Q4XTR1              	100.00%		D3BDG0              	100.00%
Bootstrap support for Q4XTR1 as seed ortholog is 100%.
Bootstrap support for D3BDG0 as seed ortholog is 99%.

Group of orthologs #471. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.pallidum:139

Q4XF96              	100.00%		D3BTJ6              	100.00%
Bootstrap support for Q4XF96 as seed ortholog is 100%.
Bootstrap support for D3BTJ6 as seed ortholog is 100%.

Group of orthologs #472. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:20 P.pallidum:45

Q4XSX4              	100.00%		D3BG15              	100.00%
Bootstrap support for Q4XSX4 as seed ortholog is 79%.
Bootstrap support for D3BG15 as seed ortholog is 96%.

Group of orthologs #473. Best score 138 bits
Score difference with first non-orthologous sequence - P.chabaudi:138 P.pallidum:138

Q4XQ89              	100.00%		D3B7P9              	100.00%
Bootstrap support for Q4XQ89 as seed ortholog is 100%.
Bootstrap support for D3B7P9 as seed ortholog is 100%.

Group of orthologs #474. Best score 137 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:47

Q4Y5X6              	100.00%		D3BHB9              	100.00%
                    	       		D3BJ29              	12.90%
                    	       		D3B469              	8.06%
                    	       		D3B4D1              	7.26%
Bootstrap support for Q4Y5X6 as seed ortholog is 100%.
Bootstrap support for D3BHB9 as seed ortholog is 99%.

Group of orthologs #475. Best score 137 bits
Score difference with first non-orthologous sequence - P.chabaudi:137 P.pallidum:137

Q4XXE7              	100.00%		D3BIM4              	100.00%
Bootstrap support for Q4XXE7 as seed ortholog is 100%.
Bootstrap support for D3BIM4 as seed ortholog is 100%.

Group of orthologs #476. Best score 136 bits
Score difference with first non-orthologous sequence - P.chabaudi:136 P.pallidum:136

Q4XAC4              	100.00%		D3BHF9              	100.00%
Bootstrap support for Q4XAC4 as seed ortholog is 100%.
Bootstrap support for D3BHF9 as seed ortholog is 100%.

Group of orthologs #477. Best score 136 bits
Score difference with first non-orthologous sequence - P.chabaudi:136 P.pallidum:136

Q4XSV1              	100.00%		D3B8H0              	100.00%
Bootstrap support for Q4XSV1 as seed ortholog is 100%.
Bootstrap support for D3B8H0 as seed ortholog is 100%.

Group of orthologs #478. Best score 136 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:75

Q4Y589              	100.00%		D3BAG5              	100.00%
Bootstrap support for Q4Y589 as seed ortholog is 99%.
Bootstrap support for D3BAG5 as seed ortholog is 99%.

Group of orthologs #479. Best score 136 bits
Score difference with first non-orthologous sequence - P.chabaudi:136 P.pallidum:136

Q4Y3U2              	100.00%		D3BK89              	100.00%
Bootstrap support for Q4Y3U2 as seed ortholog is 100%.
Bootstrap support for D3BK89 as seed ortholog is 100%.

Group of orthologs #480. Best score 135 bits
Score difference with first non-orthologous sequence - P.chabaudi:135 P.pallidum:135

Q4XXZ1              	100.00%		D3B1R4              	100.00%
Q4XFB2              	66.15%		
Bootstrap support for Q4XXZ1 as seed ortholog is 100%.
Bootstrap support for D3B1R4 as seed ortholog is 100%.

Group of orthologs #481. Best score 135 bits
Score difference with first non-orthologous sequence - P.chabaudi:135 P.pallidum:72

Q4XSX6              	100.00%		D3B636              	100.00%
Bootstrap support for Q4XSX6 as seed ortholog is 100%.
Bootstrap support for D3B636 as seed ortholog is 99%.

Group of orthologs #482. Best score 135 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:135

Q4Y968              	100.00%		D3BHR8              	100.00%
Bootstrap support for Q4Y968 as seed ortholog is 99%.
Bootstrap support for D3BHR8 as seed ortholog is 100%.

Group of orthologs #483. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.pallidum:134

Q4XW95              	100.00%		D3B846              	100.00%
                    	       		D3BNT8              	15.57%
Bootstrap support for Q4XW95 as seed ortholog is 100%.
Bootstrap support for D3B846 as seed ortholog is 100%.

Group of orthologs #484. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.pallidum:134

Q4X4D3              	100.00%		D3AW01              	100.00%
Bootstrap support for Q4X4D3 as seed ortholog is 100%.
Bootstrap support for D3AW01 as seed ortholog is 100%.

Group of orthologs #485. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.pallidum:134

Q4XEE4              	100.00%		D3BGE0              	100.00%
Bootstrap support for Q4XEE4 as seed ortholog is 100%.
Bootstrap support for D3BGE0 as seed ortholog is 100%.

Group of orthologs #486. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:41 P.pallidum:48

Q4XTW7              	100.00%		D3B8K6              	100.00%
Bootstrap support for Q4XTW7 as seed ortholog is 98%.
Bootstrap support for D3B8K6 as seed ortholog is 91%.

Group of orthologs #487. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.pallidum:134

Q4XXL6              	100.00%		D3B9D0              	100.00%
Bootstrap support for Q4XXL6 as seed ortholog is 100%.
Bootstrap support for D3B9D0 as seed ortholog is 100%.

Group of orthologs #488. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.pallidum:134

Q4Y429              	100.00%		D3BGC7              	100.00%
Bootstrap support for Q4Y429 as seed ortholog is 100%.
Bootstrap support for D3BGC7 as seed ortholog is 100%.

Group of orthologs #489. Best score 133 bits
Score difference with first non-orthologous sequence - P.chabaudi:133 P.pallidum:133

Q4XMF1              	100.00%		D3BQE1              	100.00%
Q4XGS9              	75.87%		
Bootstrap support for Q4XMF1 as seed ortholog is 100%.
Bootstrap support for D3BQE1 as seed ortholog is 100%.

Group of orthologs #490. Best score 133 bits
Score difference with first non-orthologous sequence - P.chabaudi:133 P.pallidum:133

Q4XVN2              	100.00%		D3BGC0              	100.00%
Bootstrap support for Q4XVN2 as seed ortholog is 100%.
Bootstrap support for D3BGC0 as seed ortholog is 100%.

Group of orthologs #491. Best score 133 bits
Score difference with first non-orthologous sequence - P.chabaudi:133 P.pallidum:133

Q4XVE1              	100.00%		D3BTS9              	100.00%
Bootstrap support for Q4XVE1 as seed ortholog is 100%.
Bootstrap support for D3BTS9 as seed ortholog is 100%.

Group of orthologs #492. Best score 132 bits
Score difference with first non-orthologous sequence - P.chabaudi:132 P.pallidum:132

Q4XS92              	100.00%		D3BE16              	100.00%
Bootstrap support for Q4XS92 as seed ortholog is 100%.
Bootstrap support for D3BE16 as seed ortholog is 100%.

Group of orthologs #493. Best score 132 bits
Score difference with first non-orthologous sequence - P.chabaudi:132 P.pallidum:132

Q4XUS5              	100.00%		D3BC68              	100.00%
Bootstrap support for Q4XUS5 as seed ortholog is 100%.
Bootstrap support for D3BC68 as seed ortholog is 100%.

Group of orthologs #494. Best score 132 bits
Score difference with first non-orthologous sequence - P.chabaudi:132 P.pallidum:132

Q4Y963              	100.00%		D3B1P5              	100.00%
Bootstrap support for Q4Y963 as seed ortholog is 100%.
Bootstrap support for D3B1P5 as seed ortholog is 100%.

Group of orthologs #495. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.pallidum:131

Q4XNP6              	100.00%		D3B1M9              	100.00%
Q4X5V3              	43.88%		D3B7B4              	100.00%
Bootstrap support for Q4XNP6 as seed ortholog is 100%.
Bootstrap support for D3B1M9 as seed ortholog is 100%.
Bootstrap support for D3B7B4 as seed ortholog is 100%.

Group of orthologs #496. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:16 P.pallidum:23

Q4Y0M6              	100.00%		D3BN31              	100.00%
                    	       		D3BN32              	49.35%
                    	       		D3B294              	36.35%
Bootstrap support for Q4Y0M6 as seed ortholog is 67%.
Alternative seed ortholog is Q4Y5K4 (16 bits away from this cluster)
Bootstrap support for D3BN31 as seed ortholog is 71%.
Alternative seed ortholog is D3BRU8 (23 bits away from this cluster)

Group of orthologs #497. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.pallidum:29

Q4Y0C6              	100.00%		D3BLM4              	100.00%
Q4XJ40              	48.21%		
Bootstrap support for Q4Y0C6 as seed ortholog is 100%.
Bootstrap support for D3BLM4 as seed ortholog is 82%.

Group of orthologs #498. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.pallidum:131

Q4XIJ3              	100.00%		D3AZM6              	100.00%
Bootstrap support for Q4XIJ3 as seed ortholog is 100%.
Bootstrap support for D3AZM6 as seed ortholog is 100%.

Group of orthologs #499. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.pallidum:72

Q4Y8U5              	100.00%		D3B1A8              	100.00%
Bootstrap support for Q4Y8U5 as seed ortholog is 100%.
Bootstrap support for D3B1A8 as seed ortholog is 99%.

Group of orthologs #500. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.pallidum:131

Q4XWB6              	100.00%		D3BHP3              	100.00%
Bootstrap support for Q4XWB6 as seed ortholog is 100%.
Bootstrap support for D3BHP3 as seed ortholog is 100%.

Group of orthologs #501. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.pallidum:130

Q4XNG1              	100.00%		D3BBS3              	100.00%
Bootstrap support for Q4XNG1 as seed ortholog is 100%.
Bootstrap support for D3BBS3 as seed ortholog is 100%.

Group of orthologs #502. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.pallidum:46

Q4XNJ0              	100.00%		D3BJB1              	100.00%
Bootstrap support for Q4XNJ0 as seed ortholog is 100%.
Bootstrap support for D3BJB1 as seed ortholog is 99%.

Group of orthologs #503. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.pallidum:25

Q4Y478              	100.00%		D3B4B8              	100.00%
Bootstrap support for Q4Y478 as seed ortholog is 100%.
Bootstrap support for D3B4B8 as seed ortholog is 86%.

Group of orthologs #504. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.pallidum:130

Q4Y6P8              	100.00%		D3BBH0              	100.00%
Bootstrap support for Q4Y6P8 as seed ortholog is 100%.
Bootstrap support for D3BBH0 as seed ortholog is 100%.

Group of orthologs #505. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:35 P.pallidum:129

Q4XXH6              	100.00%		D3BMK7              	100.00%
Q4XGW2              	47.91%		D3B2D5              	46.33%
Bootstrap support for Q4XXH6 as seed ortholog is 82%.
Bootstrap support for D3BMK7 as seed ortholog is 100%.

Group of orthologs #506. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.pallidum:7

Q4XRR2              	100.00%		D3B8Q0              	100.00%
Q4XES1              	57.53%		
Bootstrap support for Q4XRR2 as seed ortholog is 98%.
Bootstrap support for D3B8Q0 as seed ortholog is 50%.
Alternative seed ortholog is D3BJ21 (7 bits away from this cluster)

Group of orthologs #507. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:20 P.pallidum:129

Q4XQK2              	100.00%		D3BSM1              	100.00%
                    	       		D3BE91              	8.60%
Bootstrap support for Q4XQK2 as seed ortholog is 99%.
Bootstrap support for D3BSM1 as seed ortholog is 100%.

Group of orthologs #508. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:129

Q4X9G8              	100.00%		D3BAT4              	100.00%
Bootstrap support for Q4X9G8 as seed ortholog is 100%.
Bootstrap support for D3BAT4 as seed ortholog is 100%.

Group of orthologs #509. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:129

Q4XW75              	100.00%		D3AVM9              	100.00%
Bootstrap support for Q4XW75 as seed ortholog is 100%.
Bootstrap support for D3AVM9 as seed ortholog is 100%.

Group of orthologs #510. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:129

Q4XVP8              	100.00%		D3AYN0              	100.00%
Bootstrap support for Q4XVP8 as seed ortholog is 100%.
Bootstrap support for D3AYN0 as seed ortholog is 100%.

Group of orthologs #511. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.pallidum:129

Q4X7B3              	100.00%		D3BMX5              	100.00%
Bootstrap support for Q4X7B3 as seed ortholog is 99%.
Bootstrap support for D3BMX5 as seed ortholog is 100%.

Group of orthologs #512. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:129

Q4X4T7              	100.00%		D3BQQ8              	100.00%
Bootstrap support for Q4X4T7 as seed ortholog is 100%.
Bootstrap support for D3BQQ8 as seed ortholog is 100%.

Group of orthologs #513. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.pallidum:129

Q4Y3S5              	100.00%		D3B9F1              	100.00%
Bootstrap support for Q4Y3S5 as seed ortholog is 100%.
Bootstrap support for D3B9F1 as seed ortholog is 100%.

Group of orthologs #514. Best score 128 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.pallidum:47

Q4XZR0              	100.00%		D3BCA6              	100.00%
Bootstrap support for Q4XZR0 as seed ortholog is 100%.
Bootstrap support for D3BCA6 as seed ortholog is 92%.

Group of orthologs #515. Best score 128 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.pallidum:128

Q4Y158              	100.00%		D3BB60              	100.00%
Bootstrap support for Q4Y158 as seed ortholog is 100%.
Bootstrap support for D3BB60 as seed ortholog is 100%.

Group of orthologs #516. Best score 127 bits
Score difference with first non-orthologous sequence - P.chabaudi:127 P.pallidum:127

Q4XKV6              	100.00%		D3B5V9              	100.00%
                    	       		D3B1S2              	24.48%
                    	       		D3AZX1              	20.32%
Bootstrap support for Q4XKV6 as seed ortholog is 100%.
Bootstrap support for D3B5V9 as seed ortholog is 100%.

Group of orthologs #517. Best score 127 bits
Score difference with first non-orthologous sequence - P.chabaudi:127 P.pallidum:127

Q4XP58              	100.00%		D3BMX0              	100.00%
Bootstrap support for Q4XP58 as seed ortholog is 100%.
Bootstrap support for D3BMX0 as seed ortholog is 100%.

Group of orthologs #518. Best score 127 bits
Score difference with first non-orthologous sequence - P.chabaudi:127 P.pallidum:127

Q4XQG2              	100.00%		D3BPG0              	100.00%
Bootstrap support for Q4XQG2 as seed ortholog is 100%.
Bootstrap support for D3BPG0 as seed ortholog is 100%.

Group of orthologs #519. Best score 127 bits
Score difference with first non-orthologous sequence - P.chabaudi:127 P.pallidum:127

Q4XYJ7              	100.00%		D3BTM3              	100.00%
Bootstrap support for Q4XYJ7 as seed ortholog is 100%.
Bootstrap support for D3BTM3 as seed ortholog is 100%.

Group of orthologs #520. Best score 126 bits
Score difference with first non-orthologous sequence - P.chabaudi:126 P.pallidum:126

Q4XDT5              	100.00%		D3BMI1              	100.00%
Bootstrap support for Q4XDT5 as seed ortholog is 100%.
Bootstrap support for D3BMI1 as seed ortholog is 100%.

Group of orthologs #521. Best score 126 bits
Score difference with first non-orthologous sequence - P.chabaudi:126 P.pallidum:126

Q4XXC8              	100.00%		D3BIL1              	100.00%
Bootstrap support for Q4XXC8 as seed ortholog is 100%.
Bootstrap support for D3BIL1 as seed ortholog is 100%.

Group of orthologs #522. Best score 125 bits
Score difference with first non-orthologous sequence - P.chabaudi:125 P.pallidum:125

Q4XIH5              	100.00%		D3BEI2              	100.00%
Bootstrap support for Q4XIH5 as seed ortholog is 100%.
Bootstrap support for D3BEI2 as seed ortholog is 100%.

Group of orthologs #523. Best score 125 bits
Score difference with first non-orthologous sequence - P.chabaudi:125 P.pallidum:125

Q4XRC1              	100.00%		D3B9R2              	100.00%
Bootstrap support for Q4XRC1 as seed ortholog is 100%.
Bootstrap support for D3B9R2 as seed ortholog is 100%.

Group of orthologs #524. Best score 125 bits
Score difference with first non-orthologous sequence - P.chabaudi:125 P.pallidum:125

Q4XY65              	100.00%		D3B6B2              	100.00%
Bootstrap support for Q4XY65 as seed ortholog is 100%.
Bootstrap support for D3B6B2 as seed ortholog is 100%.

Group of orthologs #525. Best score 125 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.pallidum:80

Q4Y4H9              	100.00%		D3BVF8              	100.00%
Bootstrap support for Q4Y4H9 as seed ortholog is 98%.
Bootstrap support for D3BVF8 as seed ortholog is 99%.

Group of orthologs #526. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:124

Q4X5R8              	100.00%		D3BH08              	100.00%
Bootstrap support for Q4X5R8 as seed ortholog is 100%.
Bootstrap support for D3BH08 as seed ortholog is 100%.

Group of orthologs #527. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:124

Q4Y785              	100.00%		D3BB72              	100.00%
Bootstrap support for Q4Y785 as seed ortholog is 100%.
Bootstrap support for D3BB72 as seed ortholog is 100%.

Group of orthologs #528. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:38

Q4Y7X9              	100.00%		D3BAR7              	100.00%
Bootstrap support for Q4Y7X9 as seed ortholog is 100%.
Bootstrap support for D3BAR7 as seed ortholog is 83%.

Group of orthologs #529. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:30 P.pallidum:81

Q4XQV9              	100.00%		D3BTD3              	100.00%
Bootstrap support for Q4XQV9 as seed ortholog is 74%.
Alternative seed ortholog is Q4XMR9 (30 bits away from this cluster)
Bootstrap support for D3BTD3 as seed ortholog is 99%.

Group of orthologs #530. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:124

Q4Y2N9              	100.00%		D3BN55              	100.00%
Bootstrap support for Q4Y2N9 as seed ortholog is 100%.
Bootstrap support for D3BN55 as seed ortholog is 100%.

Group of orthologs #531. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:124

Q4Y0A9              	100.00%		D3BS99              	100.00%
Bootstrap support for Q4Y0A9 as seed ortholog is 100%.
Bootstrap support for D3BS99 as seed ortholog is 100%.

Group of orthologs #532. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.pallidum:124

Q4Y2D4              	100.00%		D3BSK0              	100.00%
Bootstrap support for Q4Y2D4 as seed ortholog is 100%.
Bootstrap support for D3BSK0 as seed ortholog is 100%.

Group of orthologs #533. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.pallidum:123

Q4XWK1              	100.00%		D3BCG7              	100.00%
                    	       		D3BI78              	10.59%
Bootstrap support for Q4XWK1 as seed ortholog is 99%.
Bootstrap support for D3BCG7 as seed ortholog is 100%.

Group of orthologs #534. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.pallidum:123

Q4XR26              	100.00%		D3BUN5              	100.00%
Q4XAV6              	57.03%		
Bootstrap support for Q4XR26 as seed ortholog is 100%.
Bootstrap support for D3BUN5 as seed ortholog is 100%.

Group of orthologs #535. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.pallidum:22

Q4XTY7              	100.00%		D3B614              	100.00%
Bootstrap support for Q4XTY7 as seed ortholog is 100%.
Bootstrap support for D3B614 as seed ortholog is 69%.
Alternative seed ortholog is D3BGL7 (22 bits away from this cluster)

Group of orthologs #536. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.pallidum:123

Q4XRD0              	100.00%		D3BCB9              	100.00%
Bootstrap support for Q4XRD0 as seed ortholog is 100%.
Bootstrap support for D3BCB9 as seed ortholog is 100%.

Group of orthologs #537. Best score 122 bits
Score difference with first non-orthologous sequence - P.chabaudi:122 P.pallidum:122

Q4XLY1              	100.00%		D3B0E6              	100.00%
Bootstrap support for Q4XLY1 as seed ortholog is 100%.
Bootstrap support for D3B0E6 as seed ortholog is 100%.

Group of orthologs #538. Best score 122 bits
Score difference with first non-orthologous sequence - P.chabaudi:122 P.pallidum:78

Q4Y113              	100.00%		D3B233              	100.00%
Bootstrap support for Q4Y113 as seed ortholog is 100%.
Bootstrap support for D3B233 as seed ortholog is 99%.

Group of orthologs #539. Best score 122 bits
Score difference with first non-orthologous sequence - P.chabaudi:12 P.pallidum:122

Q4Y4R8              	100.00%		D3BCJ7              	100.00%
Bootstrap support for Q4Y4R8 as seed ortholog is 57%.
Alternative seed ortholog is Q4XC43 (12 bits away from this cluster)
Bootstrap support for D3BCJ7 as seed ortholog is 100%.

Group of orthologs #540. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:121

Q4XIF7              	100.00%		D3AXK2              	100.00%
Q4XWA6              	51.08%		
Bootstrap support for Q4XIF7 as seed ortholog is 100%.
Bootstrap support for D3AXK2 as seed ortholog is 100%.

Group of orthologs #541. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:121

Q4XMA9              	100.00%		D3AY36              	100.00%
Bootstrap support for Q4XMA9 as seed ortholog is 100%.
Bootstrap support for D3AY36 as seed ortholog is 100%.

Group of orthologs #542. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:121

Q4X2H4              	100.00%		D3BQD4              	100.00%
Bootstrap support for Q4X2H4 as seed ortholog is 100%.
Bootstrap support for D3BQD4 as seed ortholog is 100%.

Group of orthologs #543. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:121

Q4XXV5              	100.00%		D3AVZ9              	100.00%
Bootstrap support for Q4XXV5 as seed ortholog is 100%.
Bootstrap support for D3AVZ9 as seed ortholog is 100%.

Group of orthologs #544. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:121

Q4XUS8              	100.00%		D3B0P9              	100.00%
Bootstrap support for Q4XUS8 as seed ortholog is 100%.
Bootstrap support for D3B0P9 as seed ortholog is 100%.

Group of orthologs #545. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:50

Q4Y0L5              	100.00%		D3BIF0              	100.00%
Bootstrap support for Q4Y0L5 as seed ortholog is 100%.
Bootstrap support for D3BIF0 as seed ortholog is 91%.

Group of orthologs #546. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:52

Q4XX27              	100.00%		D3BUZ0              	100.00%
Bootstrap support for Q4XX27 as seed ortholog is 100%.
Bootstrap support for D3BUZ0 as seed ortholog is 97%.

Group of orthologs #547. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.pallidum:121

Q4Y161              	100.00%		D3BV19              	100.00%
Bootstrap support for Q4Y161 as seed ortholog is 100%.
Bootstrap support for D3BV19 as seed ortholog is 100%.

Group of orthologs #548. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.pallidum:120

Q4XGE9              	100.00%		D3BQ00              	100.00%
Q4Y0Z3              	79.89%		
Bootstrap support for Q4XGE9 as seed ortholog is 100%.
Bootstrap support for D3BQ00 as seed ortholog is 100%.

Group of orthologs #549. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.pallidum:120

Q4Y981              	100.00%		D3BVI7              	100.00%
Q4XJ94              	51.25%		
Bootstrap support for Q4Y981 as seed ortholog is 100%.
Bootstrap support for D3BVI7 as seed ortholog is 100%.

Group of orthologs #550. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:22 P.pallidum:24

Q4Y4T7              	100.00%		D3B0Q7              	100.00%
Bootstrap support for Q4Y4T7 as seed ortholog is 92%.
Bootstrap support for D3B0Q7 as seed ortholog is 73%.
Alternative seed ortholog is D3BT83 (24 bits away from this cluster)

Group of orthologs #551. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.pallidum:120

Q4XGE8              	100.00%		D3BPA6              	100.00%
Bootstrap support for Q4XGE8 as seed ortholog is 100%.
Bootstrap support for D3BPA6 as seed ortholog is 100%.

Group of orthologs #552. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.pallidum:120

Q4Y3E1              	100.00%		D3BF71              	100.00%
Bootstrap support for Q4Y3E1 as seed ortholog is 100%.
Bootstrap support for D3BF71 as seed ortholog is 100%.

Group of orthologs #553. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.pallidum:119

Q4XWU8              	100.00%		D3B633              	100.00%
                    	       		D3B6K9              	80.56%
                    	       		D3BUT3              	64.58%
                    	       		D3BPL9              	45.14%
Bootstrap support for Q4XWU8 as seed ortholog is 100%.
Bootstrap support for D3B633 as seed ortholog is 100%.

Group of orthologs #554. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.pallidum:119

Q4Y1X0              	100.00%		D3BH99              	100.00%
                    	       		D3B1C3              	17.19%
Bootstrap support for Q4Y1X0 as seed ortholog is 100%.
Bootstrap support for D3BH99 as seed ortholog is 100%.

Group of orthologs #555. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.pallidum:119

Q4XIU0              	100.00%		D3BBQ4              	100.00%
Bootstrap support for Q4XIU0 as seed ortholog is 100%.
Bootstrap support for D3BBQ4 as seed ortholog is 100%.

Group of orthologs #556. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.pallidum:119

Q4XWF2              	100.00%		D3BDZ0              	100.00%
Bootstrap support for Q4XWF2 as seed ortholog is 100%.
Bootstrap support for D3BDZ0 as seed ortholog is 100%.

Group of orthologs #557. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.pallidum:119

Q4Y855              	100.00%		D3B2R4              	100.00%
Bootstrap support for Q4Y855 as seed ortholog is 100%.
Bootstrap support for D3B2R4 as seed ortholog is 100%.

Group of orthologs #558. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.pallidum:119

Q4XZG0              	100.00%		D3BNY3              	100.00%
Bootstrap support for Q4XZG0 as seed ortholog is 100%.
Bootstrap support for D3BNY3 as seed ortholog is 100%.

Group of orthologs #559. Best score 118 bits
Score difference with first non-orthologous sequence - P.chabaudi:118 P.pallidum:118

Q4XJ15              	100.00%		D3BR67              	100.00%
Q4XLB6              	96.67%		
Bootstrap support for Q4XJ15 as seed ortholog is 100%.
Bootstrap support for D3BR67 as seed ortholog is 100%.

Group of orthologs #560. Best score 118 bits
Score difference with first non-orthologous sequence - P.chabaudi:118 P.pallidum:20

Q4XPT4              	100.00%		D3BUR4              	100.00%
Bootstrap support for Q4XPT4 as seed ortholog is 100%.
Bootstrap support for D3BUR4 as seed ortholog is 68%.
Alternative seed ortholog is D3B5I3 (20 bits away from this cluster)

Group of orthologs #561. Best score 117 bits
Score difference with first non-orthologous sequence - P.chabaudi:117 P.pallidum:75

Q4XPZ0              	100.00%		D3AWE0              	100.00%
Bootstrap support for Q4XPZ0 as seed ortholog is 100%.
Bootstrap support for D3AWE0 as seed ortholog is 99%.

Group of orthologs #562. Best score 117 bits
Score difference with first non-orthologous sequence - P.chabaudi:117 P.pallidum:117

Q4XMQ4              	100.00%		D3BKL0              	100.00%
Bootstrap support for Q4XMQ4 as seed ortholog is 100%.
Bootstrap support for D3BKL0 as seed ortholog is 100%.

Group of orthologs #563. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.pallidum:116

Q4XM41              	100.00%		D3AWF3              	100.00%
Bootstrap support for Q4XM41 as seed ortholog is 100%.
Bootstrap support for D3AWF3 as seed ortholog is 100%.

Group of orthologs #564. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.pallidum:54

Q4XVP9              	100.00%		D3AX98              	100.00%
Bootstrap support for Q4XVP9 as seed ortholog is 100%.
Bootstrap support for D3AX98 as seed ortholog is 99%.

Group of orthologs #565. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.pallidum:48

Q4XWR8              	100.00%		D3B645              	100.00%
Bootstrap support for Q4XWR8 as seed ortholog is 100%.
Bootstrap support for D3B645 as seed ortholog is 91%.

Group of orthologs #566. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:116

Q4Y2P4              	100.00%		D3BAF1              	100.00%
Bootstrap support for Q4Y2P4 as seed ortholog is 86%.
Bootstrap support for D3BAF1 as seed ortholog is 100%.

Group of orthologs #567. Best score 115 bits
Score difference with first non-orthologous sequence - P.chabaudi:115 P.pallidum:55

Q4X5A0              	100.00%		D3BR70              	100.00%
Bootstrap support for Q4X5A0 as seed ortholog is 100%.
Bootstrap support for D3BR70 as seed ortholog is 98%.

Group of orthologs #568. Best score 115 bits
Score difference with first non-orthologous sequence - P.chabaudi:115 P.pallidum:115

Q4Y1V4              	100.00%		D3B3B6              	100.00%
Bootstrap support for Q4Y1V4 as seed ortholog is 100%.
Bootstrap support for D3B3B6 as seed ortholog is 100%.

Group of orthologs #569. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:114 P.pallidum:61

Q4XDW5              	100.00%		D3BL06              	100.00%
                    	       		D3B1R8              	5.85%
                    	       		D3BU16              	5.73%
Bootstrap support for Q4XDW5 as seed ortholog is 100%.
Bootstrap support for D3BL06 as seed ortholog is 79%.

Group of orthologs #570. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:114 P.pallidum:114

Q4XXU9              	100.00%		D3B6N8              	100.00%
Q4XIT2              	48.08%		
Bootstrap support for Q4XXU9 as seed ortholog is 100%.
Bootstrap support for D3B6N8 as seed ortholog is 100%.

Group of orthologs #571. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:114 P.pallidum:114

Q4XTL1              	100.00%		D3BBS5              	100.00%
Q4XED7              	39.27%		
Bootstrap support for Q4XTL1 as seed ortholog is 100%.
Bootstrap support for D3BBS5 as seed ortholog is 100%.

Group of orthologs #572. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:114 P.pallidum:114

Q4Y1K6              	100.00%		D3B9Y5              	100.00%
Q4X6A7              	8.33%		
Bootstrap support for Q4Y1K6 as seed ortholog is 100%.
Bootstrap support for D3B9Y5 as seed ortholog is 100%.

Group of orthologs #573. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:114 P.pallidum:28

Q4XRG7              	100.00%		D3BKU0              	100.00%
Bootstrap support for Q4XRG7 as seed ortholog is 100%.
Bootstrap support for D3BKU0 as seed ortholog is 88%.

Group of orthologs #574. Best score 113 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.pallidum:113

Q4XC39              	100.00%		D3BEZ0              	100.00%
Bootstrap support for Q4XC39 as seed ortholog is 100%.
Bootstrap support for D3BEZ0 as seed ortholog is 100%.

Group of orthologs #575. Best score 113 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.pallidum:113

Q4XU68              	100.00%		D3AY37              	100.00%
Bootstrap support for Q4XU68 as seed ortholog is 100%.
Bootstrap support for D3AY37 as seed ortholog is 100%.

Group of orthologs #576. Best score 113 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.pallidum:113

Q4Y218              	100.00%		D3B615              	100.00%
Bootstrap support for Q4Y218 as seed ortholog is 100%.
Bootstrap support for D3B615 as seed ortholog is 100%.

Group of orthologs #577. Best score 113 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.pallidum:113

Q4Y339              	100.00%		D3BCE5              	100.00%
Bootstrap support for Q4Y339 as seed ortholog is 100%.
Bootstrap support for D3BCE5 as seed ortholog is 100%.

Group of orthologs #578. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4XNR6              	100.00%		D3B9S8              	100.00%
Q4Y3T3              	33.31%		
Q4X536              	32.63%		
Bootstrap support for Q4XNR6 as seed ortholog is 100%.
Bootstrap support for D3B9S8 as seed ortholog is 100%.

Group of orthologs #579. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:10

Q4Y5T0              	100.00%		D3BK86              	100.00%
Q4XEW4              	47.24%		D3BG73              	26.20%
Bootstrap support for Q4Y5T0 as seed ortholog is 100%.
Bootstrap support for D3BK86 as seed ortholog is 99%.

Group of orthologs #580. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:20

Q4Y016              	100.00%		D3BTN8              	100.00%
Q4XD69              	44.31%		
Bootstrap support for Q4Y016 as seed ortholog is 100%.
Bootstrap support for D3BTN8 as seed ortholog is 98%.

Group of orthologs #581. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4XQA5              	100.00%		D3BCX2              	100.00%
Bootstrap support for Q4XQA5 as seed ortholog is 100%.
Bootstrap support for D3BCX2 as seed ortholog is 100%.

Group of orthologs #582. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4XWF0              	100.00%		D3BD80              	100.00%
Bootstrap support for Q4XWF0 as seed ortholog is 100%.
Bootstrap support for D3BD80 as seed ortholog is 100%.

Group of orthologs #583. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4Y482              	100.00%		D3B8K1              	100.00%
Bootstrap support for Q4Y482 as seed ortholog is 100%.
Bootstrap support for D3B8K1 as seed ortholog is 100%.

Group of orthologs #584. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4Y8H1              	100.00%		D3B5S1              	100.00%
Bootstrap support for Q4Y8H1 as seed ortholog is 100%.
Bootstrap support for D3B5S1 as seed ortholog is 100%.

Group of orthologs #585. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4XRZ5              	100.00%		D3BMB1              	100.00%
Bootstrap support for Q4XRZ5 as seed ortholog is 100%.
Bootstrap support for D3BMB1 as seed ortholog is 100%.

Group of orthologs #586. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4XVX3              	100.00%		D3BM05              	100.00%
Bootstrap support for Q4XVX3 as seed ortholog is 100%.
Bootstrap support for D3BM05 as seed ortholog is 100%.

Group of orthologs #587. Best score 112 bits
Score difference with first non-orthologous sequence - P.chabaudi:112 P.pallidum:112

Q4XTM8              	100.00%		D3BU56              	100.00%
Bootstrap support for Q4XTM8 as seed ortholog is 100%.
Bootstrap support for D3BU56 as seed ortholog is 100%.

Group of orthologs #588. Best score 111 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.pallidum:111

Q4XED3              	100.00%		D3BQZ1              	100.00%
Q4XM75              	72.54%		
Bootstrap support for Q4XED3 as seed ortholog is 100%.
Bootstrap support for D3BQZ1 as seed ortholog is 100%.

Group of orthologs #589. Best score 111 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.pallidum:111

Q4Y7P3              	100.00%		D3BJM3              	100.00%
                    	       		D3BPM9              	16.07%
Bootstrap support for Q4Y7P3 as seed ortholog is 100%.
Bootstrap support for D3BJM3 as seed ortholog is 100%.

Group of orthologs #590. Best score 111 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.pallidum:111

Q4XRQ3              	100.00%		D3BE05              	100.00%
Bootstrap support for Q4XRQ3 as seed ortholog is 100%.
Bootstrap support for D3BE05 as seed ortholog is 100%.

Group of orthologs #591. Best score 111 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.pallidum:111

Q4XQ56              	100.00%		D3BNZ2              	100.00%
Bootstrap support for Q4XQ56 as seed ortholog is 100%.
Bootstrap support for D3BNZ2 as seed ortholog is 100%.

Group of orthologs #592. Best score 110 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.pallidum:110

Q4XPD9              	100.00%		D3B895              	100.00%
Bootstrap support for Q4XPD9 as seed ortholog is 87%.
Bootstrap support for D3B895 as seed ortholog is 100%.

Group of orthologs #593. Best score 110 bits
Score difference with first non-orthologous sequence - P.chabaudi:110 P.pallidum:110

Q4Y6D0              	100.00%		D3B760              	100.00%
Bootstrap support for Q4Y6D0 as seed ortholog is 100%.
Bootstrap support for D3B760 as seed ortholog is 100%.

Group of orthologs #594. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.pallidum:109

Q4XTD6              	100.00%		D3BFU9              	100.00%
                    	       		D3BFU8              	25.97%
Bootstrap support for Q4XTD6 as seed ortholog is 100%.
Bootstrap support for D3BFU9 as seed ortholog is 100%.

Group of orthologs #595. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:2 P.pallidum:109

Q4XS47              	100.00%		D3AVK6              	100.00%
Bootstrap support for Q4XS47 as seed ortholog is 81%.
Bootstrap support for D3AVK6 as seed ortholog is 100%.

Group of orthologs #596. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.pallidum:109

Q4XL75              	100.00%		D3BLU5              	100.00%
Bootstrap support for Q4XL75 as seed ortholog is 100%.
Bootstrap support for D3BLU5 as seed ortholog is 100%.

Group of orthologs #597. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.pallidum:109

Q4XNI6              	100.00%		D3BM86              	100.00%
Bootstrap support for Q4XNI6 as seed ortholog is 100%.
Bootstrap support for D3BM86 as seed ortholog is 100%.

Group of orthologs #598. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.pallidum:109

Q4XMS0              	100.00%		D3BV18              	100.00%
Bootstrap support for Q4XMS0 as seed ortholog is 100%.
Bootstrap support for D3BV18 as seed ortholog is 100%.

Group of orthologs #599. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.pallidum:109

Q4XUB1              	100.00%		D3BPL5              	100.00%
Bootstrap support for Q4XUB1 as seed ortholog is 100%.
Bootstrap support for D3BPL5 as seed ortholog is 100%.

Group of orthologs #600. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.pallidum:109

Q4XYU1              	100.00%		D3BM84              	100.00%
Bootstrap support for Q4XYU1 as seed ortholog is 100%.
Bootstrap support for D3BM84 as seed ortholog is 100%.

Group of orthologs #601. Best score 108 bits
Score difference with first non-orthologous sequence - P.chabaudi:108 P.pallidum:108

Q4Y3R0              	100.00%		D3B7E6              	100.00%
Q4Y064              	8.71%		D3B3H3              	12.03%
Bootstrap support for Q4Y3R0 as seed ortholog is 100%.
Bootstrap support for D3B7E6 as seed ortholog is 100%.

Group of orthologs #602. Best score 108 bits
Score difference with first non-orthologous sequence - P.chabaudi:108 P.pallidum:108

Q4XEL9              	100.00%		D3AZF8              	100.00%
Bootstrap support for Q4XEL9 as seed ortholog is 100%.
Bootstrap support for D3AZF8 as seed ortholog is 100%.

Group of orthologs #603. Best score 107 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.pallidum:47

Q4XFU1              	100.00%		D3BGC8              	100.00%
Bootstrap support for Q4XFU1 as seed ortholog is 80%.
Bootstrap support for D3BGC8 as seed ortholog is 83%.

Group of orthologs #604. Best score 107 bits
Score difference with first non-orthologous sequence - P.chabaudi:107 P.pallidum:107

Q4XBW5              	100.00%		D3BSW9              	100.00%
Bootstrap support for Q4XBW5 as seed ortholog is 100%.
Bootstrap support for D3BSW9 as seed ortholog is 100%.

Group of orthologs #605. Best score 107 bits
Score difference with first non-orthologous sequence - P.chabaudi:107 P.pallidum:107

Q4XF63              	100.00%		D3BTD4              	100.00%
Bootstrap support for Q4XF63 as seed ortholog is 100%.
Bootstrap support for D3BTD4 as seed ortholog is 100%.

Group of orthologs #606. Best score 106 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.pallidum:106

Q4Y0N7              	100.00%		D3BMU4              	100.00%
Q4X6T5              	67.64%		
Bootstrap support for Q4Y0N7 as seed ortholog is 100%.
Bootstrap support for D3BMU4 as seed ortholog is 100%.

Group of orthologs #607. Best score 106 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.pallidum:35

Q4XEN8              	100.00%		D3B6N1              	100.00%
Bootstrap support for Q4XEN8 as seed ortholog is 100%.
Bootstrap support for D3B6N1 as seed ortholog is 82%.

Group of orthologs #608. Best score 106 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.pallidum:106

Q4XV41              	100.00%		D3BHM0              	100.00%
Bootstrap support for Q4XV41 as seed ortholog is 100%.
Bootstrap support for D3BHM0 as seed ortholog is 100%.

Group of orthologs #609. Best score 105 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.pallidum:105

Q4XM88              	100.00%		D3AZY2              	100.00%
Bootstrap support for Q4XM88 as seed ortholog is 100%.
Bootstrap support for D3AZY2 as seed ortholog is 100%.

Group of orthologs #610. Best score 105 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.pallidum:105

Q4XMH3              	100.00%		D3B5L5              	100.00%
Bootstrap support for Q4XMH3 as seed ortholog is 100%.
Bootstrap support for D3B5L5 as seed ortholog is 100%.

Group of orthologs #611. Best score 105 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.pallidum:105

Q4Y938              	100.00%		D3BGU4              	100.00%
Bootstrap support for Q4Y938 as seed ortholog is 100%.
Bootstrap support for D3BGU4 as seed ortholog is 100%.

Group of orthologs #612. Best score 104 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.pallidum:104

Q4Y438              	100.00%		D3AZQ1              	100.00%
                    	       		D3BKC7              	19.25%
Bootstrap support for Q4Y438 as seed ortholog is 100%.
Bootstrap support for D3AZQ1 as seed ortholog is 100%.

Group of orthologs #613. Best score 104 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.pallidum:104

Q4XLJ2              	100.00%		D3BKF7              	100.00%
Bootstrap support for Q4XLJ2 as seed ortholog is 100%.
Bootstrap support for D3BKF7 as seed ortholog is 100%.

Group of orthologs #614. Best score 103 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.pallidum:103

Q4XKN6              	100.00%		D3BTV9              	100.00%
Bootstrap support for Q4XKN6 as seed ortholog is 100%.
Bootstrap support for D3BTV9 as seed ortholog is 100%.

Group of orthologs #615. Best score 103 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.pallidum:103

Q4XRF5              	100.00%		D3BQA1              	100.00%
Bootstrap support for Q4XRF5 as seed ortholog is 100%.
Bootstrap support for D3BQA1 as seed ortholog is 100%.

Group of orthologs #616. Best score 102 bits
Score difference with first non-orthologous sequence - P.chabaudi:102 P.pallidum:13

Q4XYJ2              	100.00%		D3BMN2              	100.00%
                    	       		D3BMV4              	5.88%
Bootstrap support for Q4XYJ2 as seed ortholog is 100%.
Bootstrap support for D3BMN2 as seed ortholog is 55%.
Alternative seed ortholog is D3B1I1 (13 bits away from this cluster)

Group of orthologs #617. Best score 102 bits
Score difference with first non-orthologous sequence - P.chabaudi:102 P.pallidum:102

Q4XE70              	100.00%		D3BSQ1              	100.00%
Bootstrap support for Q4XE70 as seed ortholog is 100%.
Bootstrap support for D3BSQ1 as seed ortholog is 100%.

Group of orthologs #618. Best score 101 bits
Score difference with first non-orthologous sequence - P.chabaudi:101 P.pallidum:101

Q4XUJ4              	100.00%		D3BUT5              	100.00%
Bootstrap support for Q4XUJ4 as seed ortholog is 100%.
Bootstrap support for D3BUT5 as seed ortholog is 100%.

Group of orthologs #619. Best score 100 bits
Score difference with first non-orthologous sequence - P.chabaudi:100 P.pallidum:100

Q4Y5X4              	100.00%		D3BQB2              	100.00%
                    	       		D3BQB6              	35.41%
                    	       		D3B4H8              	8.03%
                    	       		D3BG32              	7.58%
                    	       		D3BHC7              	7.13%
                    	       		D3BVF7              	6.22%
Bootstrap support for Q4Y5X4 as seed ortholog is 100%.
Bootstrap support for D3BQB2 as seed ortholog is 100%.

Group of orthologs #620. Best score 100 bits
Score difference with first non-orthologous sequence - P.chabaudi:100 P.pallidum:100

Q4XUC9              	100.00%		D3B4P6              	100.00%
Q4X8E8              	64.92%		
Bootstrap support for Q4XUC9 as seed ortholog is 100%.
Bootstrap support for D3B4P6 as seed ortholog is 100%.

Group of orthologs #621. Best score 100 bits
Score difference with first non-orthologous sequence - P.chabaudi:100 P.pallidum:100

Q4X6T2              	100.00%		D3BNU2              	100.00%
Bootstrap support for Q4X6T2 as seed ortholog is 100%.
Bootstrap support for D3BNU2 as seed ortholog is 100%.

Group of orthologs #622. Best score 100 bits
Score difference with first non-orthologous sequence - P.chabaudi:100 P.pallidum:13

Q4Y845              	100.00%		D3BAK7              	100.00%
Bootstrap support for Q4Y845 as seed ortholog is 100%.
Bootstrap support for D3BAK7 as seed ortholog is 57%.
Alternative seed ortholog is D3AY51 (13 bits away from this cluster)

Group of orthologs #623. Best score 99 bits
Score difference with first non-orthologous sequence - P.chabaudi:99 P.pallidum:99

Q4Y4J3              	100.00%		D3B1K7              	100.00%
Bootstrap support for Q4Y4J3 as seed ortholog is 100%.
Bootstrap support for D3B1K7 as seed ortholog is 100%.

Group of orthologs #624. Best score 99 bits
Score difference with first non-orthologous sequence - P.chabaudi:9 P.pallidum:99

Q4Y900              	100.00%		D3BRM0              	100.00%
Bootstrap support for Q4Y900 as seed ortholog is 81%.
Bootstrap support for D3BRM0 as seed ortholog is 100%.

Group of orthologs #625. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.pallidum:98

Q4X2C1              	100.00%		D3BFK2              	100.00%
                    	       		D3BML6              	5.12%
Bootstrap support for Q4X2C1 as seed ortholog is 100%.
Bootstrap support for D3BFK2 as seed ortholog is 100%.

Group of orthologs #626. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.pallidum:11

Q4X5F1              	100.00%		D3B0U5              	100.00%
Bootstrap support for Q4X5F1 as seed ortholog is 100%.
Bootstrap support for D3B0U5 as seed ortholog is 74%.
Alternative seed ortholog is D3BE00 (11 bits away from this cluster)

Group of orthologs #627. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.pallidum:98

Q4X2S3              	100.00%		D3B9X1              	100.00%
Bootstrap support for Q4X2S3 as seed ortholog is 100%.
Bootstrap support for D3B9X1 as seed ortholog is 100%.

Group of orthologs #628. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.pallidum:98

Q4XWI1              	100.00%		D3AZM5              	100.00%
Bootstrap support for Q4XWI1 as seed ortholog is 100%.
Bootstrap support for D3AZM5 as seed ortholog is 100%.

Group of orthologs #629. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.pallidum:98

Q4XLF9              	100.00%		D3BEA8              	100.00%
Bootstrap support for Q4XLF9 as seed ortholog is 100%.
Bootstrap support for D3BEA8 as seed ortholog is 100%.

Group of orthologs #630. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:26 P.pallidum:52

Q4Y4W2              	100.00%		D3AXI5              	100.00%
Bootstrap support for Q4Y4W2 as seed ortholog is 80%.
Bootstrap support for D3AXI5 as seed ortholog is 94%.

Group of orthologs #631. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:97 P.pallidum:97

Q4Y6E0              	100.00%		D3BCK2              	100.00%
Bootstrap support for Q4Y6E0 as seed ortholog is 100%.
Bootstrap support for D3BCK2 as seed ortholog is 100%.

Group of orthologs #632. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:97 P.pallidum:97

Q4Y1X1              	100.00%		D3BN80              	100.00%
Bootstrap support for Q4Y1X1 as seed ortholog is 100%.
Bootstrap support for D3BN80 as seed ortholog is 100%.

Group of orthologs #633. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:26 P.pallidum:97

Q4Y0R7              	100.00%		D3BV52              	100.00%
Bootstrap support for Q4Y0R7 as seed ortholog is 84%.
Bootstrap support for D3BV52 as seed ortholog is 100%.

Group of orthologs #634. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:96

Q4Y540              	100.00%		D3B4H6              	100.00%
Q4XFT0              	40.63%		
Bootstrap support for Q4Y540 as seed ortholog is 100%.
Bootstrap support for D3B4H6 as seed ortholog is 100%.

Group of orthologs #635. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:96

Q4XWQ4              	100.00%		D3AYE2              	100.00%
Bootstrap support for Q4XWQ4 as seed ortholog is 100%.
Bootstrap support for D3AYE2 as seed ortholog is 100%.

Group of orthologs #636. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:96

Q4XV17              	100.00%		D3B3G8              	100.00%
Bootstrap support for Q4XV17 as seed ortholog is 100%.
Bootstrap support for D3B3G8 as seed ortholog is 100%.

Group of orthologs #637. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:96

Q4Y079              	100.00%		D3AZB6              	100.00%
Bootstrap support for Q4Y079 as seed ortholog is 100%.
Bootstrap support for D3AZB6 as seed ortholog is 100%.

Group of orthologs #638. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:96

Q4XR15              	100.00%		D3BF17              	100.00%
Bootstrap support for Q4XR15 as seed ortholog is 100%.
Bootstrap support for D3BF17 as seed ortholog is 100%.

Group of orthologs #639. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:96

Q4XX86              	100.00%		D3B9G3              	100.00%
Bootstrap support for Q4XX86 as seed ortholog is 100%.
Bootstrap support for D3B9G3 as seed ortholog is 100%.

Group of orthologs #640. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.pallidum:15

Q4Y4W7              	100.00%		D3BSN8              	100.00%
Bootstrap support for Q4Y4W7 as seed ortholog is 100%.
Bootstrap support for D3BSN8 as seed ortholog is 35%.
Alternative seed ortholog is D3AWX6 (15 bits away from this cluster)

Group of orthologs #641. Best score 95 bits
Score difference with first non-orthologous sequence - P.chabaudi:95 P.pallidum:95

Q4Y4J4              	100.00%		D3BPE9              	100.00%
Bootstrap support for Q4Y4J4 as seed ortholog is 100%.
Bootstrap support for D3BPE9 as seed ortholog is 100%.

Group of orthologs #642. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.pallidum:28

Q4XT80              	100.00%		D3BA43              	100.00%
Q4XVL6              	75.73%		
Q4XRJ5              	66.60%		
Q4Y7J1              	66.18%		
Q4Y8E7              	63.07%		
Q4XPV9              	37.34%		
Q4X8F1              	31.12%		
Q4X9N7              	29.67%		
Q4X5U1              	16.60%		
Bootstrap support for Q4XT80 as seed ortholog is 100%.
Bootstrap support for D3BA43 as seed ortholog is 79%.

Group of orthologs #643. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.pallidum:94

Q4X4Q7              	100.00%		D3BKA3              	100.00%
Bootstrap support for Q4X4Q7 as seed ortholog is 100%.
Bootstrap support for D3BKA3 as seed ortholog is 100%.

Group of orthologs #644. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.pallidum:94

Q4XXC0              	100.00%		D3AXF9              	100.00%
Bootstrap support for Q4XXC0 as seed ortholog is 100%.
Bootstrap support for D3AXF9 as seed ortholog is 100%.

Group of orthologs #645. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:38 P.pallidum:53

Q4XVB6              	100.00%		D3B5D0              	100.00%
Bootstrap support for Q4XVB6 as seed ortholog is 79%.
Bootstrap support for D3B5D0 as seed ortholog is 87%.

Group of orthologs #646. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.pallidum:94

Q4Y452              	100.00%		D3B6L2              	100.00%
Bootstrap support for Q4Y452 as seed ortholog is 100%.
Bootstrap support for D3B6L2 as seed ortholog is 100%.

Group of orthologs #647. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.pallidum:94

Q4XYN9              	100.00%		D3BCF9              	100.00%
Bootstrap support for Q4XYN9 as seed ortholog is 100%.
Bootstrap support for D3BCF9 as seed ortholog is 100%.

Group of orthologs #648. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.pallidum:94

Q4Y3I2              	100.00%		D3BK99              	100.00%
Bootstrap support for Q4Y3I2 as seed ortholog is 100%.
Bootstrap support for D3BK99 as seed ortholog is 100%.

Group of orthologs #649. Best score 93 bits
Score difference with first non-orthologous sequence - P.chabaudi:93 P.pallidum:93

Q4XYQ9              	100.00%		D3B413              	100.00%
Bootstrap support for Q4XYQ9 as seed ortholog is 100%.
Bootstrap support for D3B413 as seed ortholog is 100%.

Group of orthologs #650. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:23 P.pallidum:92

Q4XGU5              	100.00%		D3AXK3              	100.00%
Q4XZK0              	100.00%		
Bootstrap support for Q4XGU5 as seed ortholog is 89%.
Bootstrap support for Q4XZK0 as seed ortholog is 88%.
Bootstrap support for D3AXK3 as seed ortholog is 100%.

Group of orthologs #651. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.pallidum:36

Q4X754              	100.00%		D3AYM4              	100.00%
Bootstrap support for Q4X754 as seed ortholog is 100%.
Bootstrap support for D3AYM4 as seed ortholog is 97%.

Group of orthologs #652. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:15 P.pallidum:92

Q4XHP3              	100.00%		D3AWM8              	100.00%
Bootstrap support for Q4XHP3 as seed ortholog is 72%.
Alternative seed ortholog is Q4Y2U2 (15 bits away from this cluster)
Bootstrap support for D3AWM8 as seed ortholog is 100%.

Group of orthologs #653. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.pallidum:92

Q4XGA6              	100.00%		D3AZW3              	100.00%
Bootstrap support for Q4XGA6 as seed ortholog is 100%.
Bootstrap support for D3AZW3 as seed ortholog is 100%.

Group of orthologs #654. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.pallidum:92

Q4XW88              	100.00%		D3AYL6              	100.00%
Bootstrap support for Q4XW88 as seed ortholog is 100%.
Bootstrap support for D3AYL6 as seed ortholog is 100%.

Group of orthologs #655. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.pallidum:92

Q4XXY3              	100.00%		D3BF91              	100.00%
Bootstrap support for Q4XXY3 as seed ortholog is 100%.
Bootstrap support for D3BF91 as seed ortholog is 100%.

Group of orthologs #656. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.pallidum:92

Q4Y1V5              	100.00%		D3BMU1              	100.00%
Bootstrap support for Q4Y1V5 as seed ortholog is 100%.
Bootstrap support for D3BMU1 as seed ortholog is 100%.

Group of orthologs #657. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.pallidum:92

Q4XYH8              	100.00%		D3BUE5              	100.00%
Bootstrap support for Q4XYH8 as seed ortholog is 100%.
Bootstrap support for D3BUE5 as seed ortholog is 100%.

Group of orthologs #658. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:91

Q4XXC9              	100.00%		D3B7G7              	100.00%
Q4XPR9              	5.14%		D3B7G4              	43.02%
                    	       		D3B7G5              	40.43%
                    	       		D3B7G6              	30.30%
Bootstrap support for Q4XXC9 as seed ortholog is 100%.
Bootstrap support for D3B7G7 as seed ortholog is 100%.

Group of orthologs #659. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:46

Q4XQ63              	100.00%		D3BDR5              	100.00%
                    	       		D3BV49              	100.00%
Bootstrap support for Q4XQ63 as seed ortholog is 100%.
Bootstrap support for D3BDR5 as seed ortholog is 97%.
Bootstrap support for D3BV49 as seed ortholog is 97%.

Group of orthologs #660. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:91

Q4Y8N1              	100.00%		D3BNT6              	100.00%
                    	       		D3BDZ6              	8.53%
Bootstrap support for Q4Y8N1 as seed ortholog is 100%.
Bootstrap support for D3BNT6 as seed ortholog is 100%.

Group of orthologs #661. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:91

Q4XE77              	100.00%		D3BB06              	100.00%
Bootstrap support for Q4XE77 as seed ortholog is 100%.
Bootstrap support for D3BB06 as seed ortholog is 100%.

Group of orthologs #662. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:91

Q4Y8I1              	100.00%		D3B7E2              	100.00%
Bootstrap support for Q4Y8I1 as seed ortholog is 100%.
Bootstrap support for D3B7E2 as seed ortholog is 100%.

Group of orthologs #663. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:91

Q4XP40              	100.00%		D3BUG2              	100.00%
Bootstrap support for Q4XP40 as seed ortholog is 100%.
Bootstrap support for D3BUG2 as seed ortholog is 100%.

Group of orthologs #664. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:91

Q4XS77              	100.00%		D3BV55              	100.00%
Bootstrap support for Q4XS77 as seed ortholog is 100%.
Bootstrap support for D3BV55 as seed ortholog is 100%.

Group of orthologs #665. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.pallidum:39

Q4XZX0              	100.00%		D3BRN9              	100.00%
Bootstrap support for Q4XZX0 as seed ortholog is 100%.
Bootstrap support for D3BRN9 as seed ortholog is 92%.

Group of orthologs #666. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:21 P.pallidum:44

Q4Y357              	100.00%		D3BJA5              	100.00%
                    	       		D3BEK7              	16.02%
                    	       		D3AXB2              	7.13%
                    	       		D3AXK1              	5.13%
Bootstrap support for Q4Y357 as seed ortholog is 63%.
Alternative seed ortholog is Q4XN28 (21 bits away from this cluster)
Bootstrap support for D3BJA5 as seed ortholog is 95%.

Group of orthologs #667. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.pallidum:90

Q4XLZ7              	100.00%		D3BL25              	100.00%
                    	       		D3B528              	14.66%
                    	       		D3BES8              	8.53%
Bootstrap support for Q4XLZ7 as seed ortholog is 100%.
Bootstrap support for D3BL25 as seed ortholog is 100%.

Group of orthologs #668. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.pallidum:11

Q4Y247              	100.00%		D3B3X7              	100.00%
Q4X8D1              	55.22%		
Bootstrap support for Q4Y247 as seed ortholog is 100%.
Bootstrap support for D3B3X7 as seed ortholog is 53%.
Alternative seed ortholog is D3B668 (11 bits away from this cluster)

Group of orthologs #669. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.pallidum:89

Q4X393              	100.00%		D3B9P1              	100.00%
Bootstrap support for Q4X393 as seed ortholog is 100%.
Bootstrap support for D3B9P1 as seed ortholog is 100%.

Group of orthologs #670. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:40 P.pallidum:40

Q4XZ96              	100.00%		D3B5L4              	100.00%
Bootstrap support for Q4XZ96 as seed ortholog is 85%.
Bootstrap support for D3B5L4 as seed ortholog is 75%.

Group of orthologs #671. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:22 P.pallidum:3

Q4Y0Q7              	100.00%		D3B7Y6              	100.00%
Bootstrap support for Q4Y0Q7 as seed ortholog is 45%.
Alternative seed ortholog is Q4XT24 (22 bits away from this cluster)
Bootstrap support for D3B7Y6 as seed ortholog is 67%.
Alternative seed ortholog is D3BCY5 (3 bits away from this cluster)

Group of orthologs #672. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.pallidum:89

Q4XUJ1              	100.00%		D3BEK8              	100.00%
Bootstrap support for Q4XUJ1 as seed ortholog is 100%.
Bootstrap support for D3BEK8 as seed ortholog is 100%.

Group of orthologs #673. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.pallidum:89

Q4Y8G3              	100.00%		D3BB09              	100.00%
Bootstrap support for Q4Y8G3 as seed ortholog is 100%.
Bootstrap support for D3BB09 as seed ortholog is 100%.

Group of orthologs #674. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.pallidum:89

Q4XXG1              	100.00%		D3BQV3              	100.00%
Bootstrap support for Q4XXG1 as seed ortholog is 100%.
Bootstrap support for D3BQV3 as seed ortholog is 100%.

Group of orthologs #675. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.pallidum:43

Q4Y4X1              	100.00%		D3BRR5              	100.00%
Bootstrap support for Q4Y4X1 as seed ortholog is 100%.
Bootstrap support for D3BRR5 as seed ortholog is 99%.

Group of orthologs #676. Best score 88 bits
Score difference with first non-orthologous sequence - P.chabaudi:88 P.pallidum:23

Q4XM13              	100.00%		D3B2S2              	100.00%
                    	       		D3AZ81              	7.93%
                    	       		D3BH37              	5.85%
Bootstrap support for Q4XM13 as seed ortholog is 100%.
Bootstrap support for D3B2S2 as seed ortholog is 56%.
Alternative seed ortholog is D3BB95 (23 bits away from this cluster)

Group of orthologs #677. Best score 88 bits
Score difference with first non-orthologous sequence - P.chabaudi:88 P.pallidum:88

Q4Y997              	100.00%		D3BU74              	100.00%
                    	       		D3B836              	5.12%
Bootstrap support for Q4Y997 as seed ortholog is 100%.
Bootstrap support for D3BU74 as seed ortholog is 100%.

Group of orthologs #678. Best score 88 bits
Score difference with first non-orthologous sequence - P.chabaudi:88 P.pallidum:88

Q4Y4J9              	100.00%		D3B8Y0              	100.00%
Bootstrap support for Q4Y4J9 as seed ortholog is 100%.
Bootstrap support for D3B8Y0 as seed ortholog is 100%.

Group of orthologs #679. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.pallidum:87

Q4Y128              	100.00%		D3BQ40              	100.00%
Q4XA57              	50.81%		
Bootstrap support for Q4Y128 as seed ortholog is 100%.
Bootstrap support for D3BQ40 as seed ortholog is 100%.

Group of orthologs #680. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.pallidum:87

Q4XTJ0              	100.00%		D3B165              	100.00%
Bootstrap support for Q4XTJ0 as seed ortholog is 100%.
Bootstrap support for D3B165 as seed ortholog is 100%.

Group of orthologs #681. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:45 P.pallidum:87

Q4XZ53              	100.00%		D3AZ74              	100.00%
Bootstrap support for Q4XZ53 as seed ortholog is 90%.
Bootstrap support for D3AZ74 as seed ortholog is 100%.

Group of orthologs #682. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.pallidum:87

Q4Y5L1              	100.00%		D3B5U7              	100.00%
Bootstrap support for Q4Y5L1 as seed ortholog is 100%.
Bootstrap support for D3B5U7 as seed ortholog is 100%.

Group of orthologs #683. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.pallidum:86

Q4XGW1              	100.00%		D3B963              	100.00%
Bootstrap support for Q4XGW1 as seed ortholog is 100%.
Bootstrap support for D3B963 as seed ortholog is 100%.

Group of orthologs #684. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.pallidum:86

Q4X848              	100.00%		D3BPR8              	100.00%
Bootstrap support for Q4X848 as seed ortholog is 100%.
Bootstrap support for D3BPR8 as seed ortholog is 100%.

Group of orthologs #685. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.pallidum:86

Q4XSA3              	100.00%		D3B9S7              	100.00%
Bootstrap support for Q4XSA3 as seed ortholog is 100%.
Bootstrap support for D3B9S7 as seed ortholog is 100%.

Group of orthologs #686. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.pallidum:33

Q4Y6W6              	100.00%		D3BR13              	100.00%
Bootstrap support for Q4Y6W6 as seed ortholog is 100%.
Bootstrap support for D3BR13 as seed ortholog is 95%.

Group of orthologs #687. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.pallidum:85

Q4Y638              	100.00%		D3BE02              	100.00%
Q4XNZ6              	64.07%		
Q4XXY1              	59.29%		
Q4XMX8              	55.19%		
Q4Y5U9              	52.32%		
Q4Y3D5              	45.77%		
Q4XSF9              	38.80%		
Q4Y2F5              	36.89%		
Q4XMY0              	31.01%		
Q4XB56              	28.14%		
Q4XFT8              	21.17%		
Q4X492              	21.04%		
Bootstrap support for Q4Y638 as seed ortholog is 100%.
Bootstrap support for D3BE02 as seed ortholog is 100%.

Group of orthologs #688. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.pallidum:85

Q4Y0N6              	100.00%		D3BK43              	100.00%
Q4X7M1              	74.70%		
Bootstrap support for Q4Y0N6 as seed ortholog is 100%.
Bootstrap support for D3BK43 as seed ortholog is 100%.

Group of orthologs #689. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.pallidum:85

Q4X638              	100.00%		D3BH46              	100.00%
Bootstrap support for Q4X638 as seed ortholog is 100%.
Bootstrap support for D3BH46 as seed ortholog is 100%.

Group of orthologs #690. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.pallidum:85

Q4XX52              	100.00%		D3AYP4              	100.00%
Bootstrap support for Q4XX52 as seed ortholog is 100%.
Bootstrap support for D3AYP4 as seed ortholog is 100%.

Group of orthologs #691. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.pallidum:85

Q4Y762              	100.00%		D3B180              	100.00%
Bootstrap support for Q4Y762 as seed ortholog is 100%.
Bootstrap support for D3B180 as seed ortholog is 100%.

Group of orthologs #692. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.pallidum:85

Q4Y3E5              	100.00%		D3BCC1              	100.00%
Bootstrap support for Q4Y3E5 as seed ortholog is 100%.
Bootstrap support for D3BCC1 as seed ortholog is 100%.

Group of orthologs #693. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:32 P.pallidum:6

Q4Y2A6              	100.00%		D3AVR4              	100.00%
Q4XH10              	51.69%		D3BN50              	9.56%
                    	       		D3BCK5              	6.85%
                    	       		D3AXA3              	5.41%
Bootstrap support for Q4Y2A6 as seed ortholog is 61%.
Alternative seed ortholog is Q4X4M7 (32 bits away from this cluster)
Bootstrap support for D3AVR4 as seed ortholog is 83%.

Group of orthologs #694. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XSB7              	100.00%		D3BFH7              	100.00%
                    	       		D3BQP4              	33.43%
                    	       		D3AVH5              	29.46%
                    	       		D3AVJ6              	12.37%
                    	       		D3BU41              	10.80%
Bootstrap support for Q4XSB7 as seed ortholog is 100%.
Bootstrap support for D3BFH7 as seed ortholog is 100%.

Group of orthologs #695. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XJC4              	100.00%		D3AVU2              	100.00%
                    	       		D3BDL0              	6.34%
                    	       		D3B101              	5.58%
Bootstrap support for Q4XJC4 as seed ortholog is 100%.
Bootstrap support for D3AVU2 as seed ortholog is 100%.

Group of orthologs #696. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XYW8              	100.00%		D3B571              	100.00%
                    	       		D3BV09              	22.03%
Bootstrap support for Q4XYW8 as seed ortholog is 100%.
Bootstrap support for D3B571 as seed ortholog is 100%.

Group of orthologs #697. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4X2I7              	100.00%		D3BLD3              	100.00%
Bootstrap support for Q4X2I7 as seed ortholog is 100%.
Bootstrap support for D3BLD3 as seed ortholog is 100%.

Group of orthologs #698. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XA41              	100.00%		D3BP72              	100.00%
Bootstrap support for Q4XA41 as seed ortholog is 100%.
Bootstrap support for D3BP72 as seed ortholog is 100%.

Group of orthologs #699. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XPW6              	100.00%		D3BCX0              	100.00%
Bootstrap support for Q4XPW6 as seed ortholog is 100%.
Bootstrap support for D3BCX0 as seed ortholog is 100%.

Group of orthologs #700. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4Y5F0              	100.00%		D3B6R3              	100.00%
Bootstrap support for Q4Y5F0 as seed ortholog is 100%.
Bootstrap support for D3B6R3 as seed ortholog is 100%.

Group of orthologs #701. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XLE8              	100.00%		D3BUX7              	100.00%
Bootstrap support for Q4XLE8 as seed ortholog is 100%.
Bootstrap support for D3BUX7 as seed ortholog is 100%.

Group of orthologs #702. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.pallidum:84

Q4XTM7              	100.00%		D3BTL0              	100.00%
Bootstrap support for Q4XTM7 as seed ortholog is 100%.
Bootstrap support for D3BTL0 as seed ortholog is 100%.

Group of orthologs #703. Best score 83 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:83

Q4XSD1              	100.00%		D3B4Y2              	100.00%
Q4XGZ3              	67.89%		
Bootstrap support for Q4XSD1 as seed ortholog is 100%.
Bootstrap support for D3B4Y2 as seed ortholog is 100%.

Group of orthologs #704. Best score 83 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:83

Q4XA05              	100.00%		D3B115              	100.00%
Bootstrap support for Q4XA05 as seed ortholog is 100%.
Bootstrap support for D3B115 as seed ortholog is 100%.

Group of orthologs #705. Best score 83 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:83

Q4XLK3              	100.00%		D3B081              	100.00%
Bootstrap support for Q4XLK3 as seed ortholog is 100%.
Bootstrap support for D3B081 as seed ortholog is 100%.

Group of orthologs #706. Best score 83 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:83

Q4XSS5              	100.00%		D3B0Y6              	100.00%
Bootstrap support for Q4XSS5 as seed ortholog is 100%.
Bootstrap support for D3B0Y6 as seed ortholog is 100%.

Group of orthologs #707. Best score 83 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.pallidum:83

Q4XZT6              	100.00%		D3B3D8              	100.00%
Bootstrap support for Q4XZT6 as seed ortholog is 100%.
Bootstrap support for D3B3D8 as seed ortholog is 100%.

Group of orthologs #708. Best score 83 bits
Score difference with first non-orthologous sequence - P.chabaudi:14 P.pallidum:36

Q4Y5S2              	100.00%		D3BQD0              	100.00%
Bootstrap support for Q4Y5S2 as seed ortholog is 98%.
Bootstrap support for D3BQD0 as seed ortholog is 99%.

Group of orthologs #709. Best score 82 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.pallidum:82

Q4Y2P1              	100.00%		D3B3R9              	100.00%
Bootstrap support for Q4Y2P1 as seed ortholog is 100%.
Bootstrap support for D3B3R9 as seed ortholog is 100%.

Group of orthologs #710. Best score 82 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.pallidum:82

Q4XVC3              	100.00%		D3BFL2              	100.00%
Bootstrap support for Q4XVC3 as seed ortholog is 100%.
Bootstrap support for D3BFL2 as seed ortholog is 100%.

Group of orthologs #711. Best score 81 bits
Score difference with first non-orthologous sequence - P.chabaudi:6 P.pallidum:81

Q4Y1Q6              	100.00%		D3BV74              	100.00%
Q4X9Q3              	79.10%		D3BIA3              	14.66%
                    	       		D3AZW2              	8.20%
                    	       		D3BAH0              	8.03%
                    	       		D3B5M9              	6.98%
                    	       		D3BS42              	5.24%
Bootstrap support for Q4Y1Q6 as seed ortholog is 50%.
Alternative seed ortholog is Q4XMZ1 (6 bits away from this cluster)
Bootstrap support for D3BV74 as seed ortholog is 100%.

Group of orthologs #712. Best score 81 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.pallidum:81

Q4XYA2              	100.00%		D3BC41              	100.00%
Bootstrap support for Q4XYA2 as seed ortholog is 100%.
Bootstrap support for D3BC41 as seed ortholog is 100%.

Group of orthologs #713. Best score 81 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.pallidum:81

Q4XZW7              	100.00%		D3BRR6              	100.00%
Bootstrap support for Q4XZW7 as seed ortholog is 100%.
Bootstrap support for D3BRR6 as seed ortholog is 100%.

Group of orthologs #714. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:80 P.pallidum:80

Q4XDS5              	100.00%		D3B6X9              	100.00%
Bootstrap support for Q4XDS5 as seed ortholog is 100%.
Bootstrap support for D3B6X9 as seed ortholog is 100%.

Group of orthologs #715. Best score 79 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:79

Q4XWQ6              	100.00%		D3BGS2              	100.00%
Q4XFB1              	53.20%		D3BQZ9              	10.26%
Bootstrap support for Q4XWQ6 as seed ortholog is 100%.
Bootstrap support for D3BGS2 as seed ortholog is 100%.

Group of orthologs #716. Best score 79 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:79

Q4XV39              	100.00%		D3BB02              	100.00%
Bootstrap support for Q4XV39 as seed ortholog is 100%.
Bootstrap support for D3BB02 as seed ortholog is 100%.

Group of orthologs #717. Best score 79 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.pallidum:6

Q4XR27              	100.00%		D3BR31              	100.00%
Bootstrap support for Q4XR27 as seed ortholog is 100%.
Bootstrap support for D3BR31 as seed ortholog is 57%.
Alternative seed ortholog is D3B3T0 (6 bits away from this cluster)

Group of orthologs #718. Best score 78 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.pallidum:78

Q4XKZ9              	100.00%		D3BM67              	100.00%
                    	       		D3BPH9              	10.73%
Bootstrap support for Q4XKZ9 as seed ortholog is 100%.
Bootstrap support for D3BM67 as seed ortholog is 100%.

Group of orthologs #719. Best score 78 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.pallidum:78

Q4XUG7              	100.00%		D3BAV8              	100.00%
Bootstrap support for Q4XUG7 as seed ortholog is 100%.
Bootstrap support for D3BAV8 as seed ortholog is 100%.

Group of orthologs #720. Best score 78 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.pallidum:78

Q4XZ61              	100.00%		D3BK63              	100.00%
Bootstrap support for Q4XZ61 as seed ortholog is 100%.
Bootstrap support for D3BK63 as seed ortholog is 100%.

Group of orthologs #721. Best score 78 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.pallidum:78

Q4XU61              	100.00%		D3BSC8              	100.00%
Bootstrap support for Q4XU61 as seed ortholog is 100%.
Bootstrap support for D3BSC8 as seed ortholog is 100%.

Group of orthologs #722. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:14 P.pallidum:8

Q4X6C2              	100.00%		D3BJW4              	100.00%
Bootstrap support for Q4X6C2 as seed ortholog is 83%.
Bootstrap support for D3BJW4 as seed ortholog is 55%.
Alternative seed ortholog is D3AXI6 (8 bits away from this cluster)

Group of orthologs #723. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.pallidum:77

Q4XQL2              	100.00%		D3B8P8              	100.00%
Bootstrap support for Q4XQL2 as seed ortholog is 100%.
Bootstrap support for D3B8P8 as seed ortholog is 100%.

Group of orthologs #724. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.pallidum:77

Q4XYC4              	100.00%		D3BJY7              	100.00%
Bootstrap support for Q4XYC4 as seed ortholog is 100%.
Bootstrap support for D3BJY7 as seed ortholog is 100%.

Group of orthologs #725. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.pallidum:77

Q4Y6U9              	100.00%		D3BDP9              	100.00%
Bootstrap support for Q4Y6U9 as seed ortholog is 100%.
Bootstrap support for D3BDP9 as seed ortholog is 100%.

Group of orthologs #726. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:27

Q4XEY7              	100.00%		D3AWW2              	100.00%
Q4XVW3              	51.09%		
Bootstrap support for Q4XEY7 as seed ortholog is 100%.
Bootstrap support for D3AWW2 as seed ortholog is 95%.

Group of orthologs #727. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:76

Q4XT30              	100.00%		D3B811              	100.00%
Q4X5D0              	28.03%		
Bootstrap support for Q4XT30 as seed ortholog is 100%.
Bootstrap support for D3B811 as seed ortholog is 100%.

Group of orthologs #728. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:76

Q4XQ57              	100.00%		D3B2K3              	100.00%
Bootstrap support for Q4XQ57 as seed ortholog is 100%.
Bootstrap support for D3B2K3 as seed ortholog is 100%.

Group of orthologs #729. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:76

Q4XN74              	100.00%		D3B7Y4              	100.00%
Bootstrap support for Q4XN74 as seed ortholog is 100%.
Bootstrap support for D3B7Y4 as seed ortholog is 100%.

Group of orthologs #730. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:5 P.pallidum:21

Q4XDZ8              	100.00%		D3BIG3              	100.00%
Bootstrap support for Q4XDZ8 as seed ortholog is 50%.
Alternative seed ortholog is Q4XWF8 (5 bits away from this cluster)
Bootstrap support for D3BIG3 as seed ortholog is 74%.
Alternative seed ortholog is D3B1S9 (21 bits away from this cluster)

Group of orthologs #731. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:76

Q4XYV1              	100.00%		D3B4F5              	100.00%
Bootstrap support for Q4XYV1 as seed ortholog is 100%.
Bootstrap support for D3B4F5 as seed ortholog is 100%.

Group of orthologs #732. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.pallidum:76

Q4XZJ4              	100.00%		D3B912              	100.00%
Bootstrap support for Q4XZJ4 as seed ortholog is 100%.
Bootstrap support for D3B912 as seed ortholog is 100%.

Group of orthologs #733. Best score 75 bits
Score difference with first non-orthologous sequence - P.chabaudi:75 P.pallidum:75

Q4XI97              	100.00%		D3B416              	100.00%
Q4XZF2              	100.00%		
Bootstrap support for Q4XI97 as seed ortholog is 100%.
Bootstrap support for Q4XZF2 as seed ortholog is 100%.
Bootstrap support for D3B416 as seed ortholog is 100%.

Group of orthologs #734. Best score 75 bits
Score difference with first non-orthologous sequence - P.chabaudi:75 P.pallidum:75

Q4X4X0              	100.00%		D3BQT7              	100.00%
Bootstrap support for Q4X4X0 as seed ortholog is 100%.
Bootstrap support for D3BQT7 as seed ortholog is 100%.

Group of orthologs #735. Best score 75 bits
Score difference with first non-orthologous sequence - P.chabaudi:75 P.pallidum:75

Q4XVD9              	100.00%		D3BN29              	100.00%
Bootstrap support for Q4XVD9 as seed ortholog is 100%.
Bootstrap support for D3BN29 as seed ortholog is 100%.

Group of orthologs #736. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:3 P.pallidum:74

Q4XYN2              	100.00%		D3BFU7              	100.00%
Q4X802              	46.33%		D3AWD8              	14.65%
Bootstrap support for Q4XYN2 as seed ortholog is 47%.
Alternative seed ortholog is Q4Y856 (3 bits away from this cluster)
Bootstrap support for D3BFU7 as seed ortholog is 100%.

Group of orthologs #737. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:25 P.pallidum:74

Q4Y5E1              	100.00%		D3BQ72              	100.00%
                    	       		D3B9K5              	39.43%
                    	       		D3BL18              	12.90%
Bootstrap support for Q4Y5E1 as seed ortholog is 83%.
Bootstrap support for D3BQ72 as seed ortholog is 100%.

Group of orthologs #738. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.pallidum:15

Q4XTQ7              	100.00%		D3BMA2              	100.00%
Q4XHB1              	47.49%		
Bootstrap support for Q4XTQ7 as seed ortholog is 100%.
Bootstrap support for D3BMA2 as seed ortholog is 71%.
Alternative seed ortholog is D3BAX8 (15 bits away from this cluster)

Group of orthologs #739. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.pallidum:74

Q4XS10              	100.00%		D3BSZ3              	100.00%
                    	       		D3BFK9              	36.94%
Bootstrap support for Q4XS10 as seed ortholog is 100%.
Bootstrap support for D3BSZ3 as seed ortholog is 100%.

Group of orthologs #740. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.pallidum:74

Q4XYR3              	100.00%		D3BUP0              	100.00%
Q4X9S3              	56.70%		
Bootstrap support for Q4XYR3 as seed ortholog is 100%.
Bootstrap support for D3BUP0 as seed ortholog is 100%.

Group of orthologs #741. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.pallidum:74

Q4XHS5              	100.00%		D3AXK4              	100.00%
Bootstrap support for Q4XHS5 as seed ortholog is 100%.
Bootstrap support for D3AXK4 as seed ortholog is 100%.

Group of orthologs #742. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.pallidum:74

Q4XQJ4              	100.00%		D3B1V3              	100.00%
Bootstrap support for Q4XQJ4 as seed ortholog is 100%.
Bootstrap support for D3B1V3 as seed ortholog is 100%.

Group of orthologs #743. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.pallidum:74

Q4XUJ0              	100.00%		D3BAU6              	100.00%
Bootstrap support for Q4XUJ0 as seed ortholog is 100%.
Bootstrap support for D3BAU6 as seed ortholog is 100%.

Group of orthologs #744. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:73 P.pallidum:24

Q4Y327              	100.00%		D3B3P3              	100.00%
                    	       		D3AVL3              	10.67%
                    	       		D3AVQ8              	9.90%
Bootstrap support for Q4Y327 as seed ortholog is 100%.
Bootstrap support for D3B3P3 as seed ortholog is 74%.
Alternative seed ortholog is D3B7V5 (24 bits away from this cluster)

Group of orthologs #745. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:73 P.pallidum:73

Q4XUE9              	100.00%		D3BN30              	100.00%
Bootstrap support for Q4XUE9 as seed ortholog is 100%.
Bootstrap support for D3BN30 as seed ortholog is 100%.

Group of orthologs #746. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:2 P.pallidum:73

Q4Y8R6              	100.00%		D3BCC3              	100.00%
Bootstrap support for Q4Y8R6 as seed ortholog is 52%.
Alternative seed ortholog is Q4XM95 (2 bits away from this cluster)
Bootstrap support for D3BCC3 as seed ortholog is 100%.

Group of orthologs #747. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:73 P.pallidum:73

Q4XVK2              	100.00%		D3BRL9              	100.00%
Bootstrap support for Q4XVK2 as seed ortholog is 100%.
Bootstrap support for D3BRL9 as seed ortholog is 100%.

Group of orthologs #748. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:73 P.pallidum:73

Q4Y1T4              	100.00%		D3BUQ1              	100.00%
Bootstrap support for Q4Y1T4 as seed ortholog is 100%.
Bootstrap support for D3BUQ1 as seed ortholog is 100%.

Group of orthologs #749. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.pallidum:72

Q4XTG6              	100.00%		D3AY14              	100.00%
Q4XUC2              	100.00%		
Bootstrap support for Q4XTG6 as seed ortholog is 100%.
Bootstrap support for Q4XUC2 as seed ortholog is 100%.
Bootstrap support for D3AY14 as seed ortholog is 100%.

Group of orthologs #750. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.pallidum:72

Q4X293              	100.00%		D3BKZ5              	100.00%
Bootstrap support for Q4X293 as seed ortholog is 100%.
Bootstrap support for D3BKZ5 as seed ortholog is 100%.

Group of orthologs #751. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.pallidum:72

Q4XML2              	100.00%		D3BHQ1              	100.00%
Bootstrap support for Q4XML2 as seed ortholog is 100%.
Bootstrap support for D3BHQ1 as seed ortholog is 100%.

Group of orthologs #752. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XNY4              	100.00%		D3AVN1              	100.00%
Q4XCK9              	70.55%		
Bootstrap support for Q4XNY4 as seed ortholog is 100%.
Bootstrap support for D3AVN1 as seed ortholog is 100%.

Group of orthologs #753. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4X5C5              	100.00%		D3AZM3              	100.00%
Bootstrap support for Q4X5C5 as seed ortholog is 100%.
Bootstrap support for D3AZM3 as seed ortholog is 100%.

Group of orthologs #754. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XBH3              	100.00%		D3B351              	100.00%
Bootstrap support for Q4XBH3 as seed ortholog is 100%.
Bootstrap support for D3B351 as seed ortholog is 100%.

Group of orthologs #755. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XG68              	100.00%		D3BAV5              	100.00%
Bootstrap support for Q4XG68 as seed ortholog is 100%.
Bootstrap support for D3BAV5 as seed ortholog is 100%.

Group of orthologs #756. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XWC9              	100.00%		D3AZR0              	100.00%
Bootstrap support for Q4XWC9 as seed ortholog is 100%.
Bootstrap support for D3AZR0 as seed ortholog is 100%.

Group of orthologs #757. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XRT6              	100.00%		D3B508              	100.00%
Bootstrap support for Q4XRT6 as seed ortholog is 100%.
Bootstrap support for D3B508 as seed ortholog is 100%.

Group of orthologs #758. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XY01              	100.00%		D3BE71              	100.00%
Bootstrap support for Q4XY01 as seed ortholog is 100%.
Bootstrap support for D3BE71 as seed ortholog is 100%.

Group of orthologs #759. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4XSW8              	100.00%		D3BQY5              	100.00%
Bootstrap support for Q4XSW8 as seed ortholog is 100%.
Bootstrap support for D3BQY5 as seed ortholog is 100%.

Group of orthologs #760. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.pallidum:71

Q4Y6D3              	100.00%		D3BFH1              	100.00%
Bootstrap support for Q4Y6D3 as seed ortholog is 100%.
Bootstrap support for D3BFH1 as seed ortholog is 100%.

Group of orthologs #761. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.pallidum:70

Q4Y1M5              	100.00%		D3BI35              	100.00%
                    	       		D3AVV7              	59.91%
                    	       		D3BAD3              	14.36%
Bootstrap support for Q4Y1M5 as seed ortholog is 100%.
Bootstrap support for D3BI35 as seed ortholog is 100%.

Group of orthologs #762. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.pallidum:70

Q4X2G6              	100.00%		D3AYJ3              	100.00%
Bootstrap support for Q4X2G6 as seed ortholog is 100%.
Bootstrap support for D3AYJ3 as seed ortholog is 100%.

Group of orthologs #763. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.pallidum:70

Q4X9A1              	100.00%		D3BIR0              	100.00%
Bootstrap support for Q4X9A1 as seed ortholog is 100%.
Bootstrap support for D3BIR0 as seed ortholog is 100%.

Group of orthologs #764. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.pallidum:70

Q4XT60              	100.00%		D3BJE1              	100.00%
Bootstrap support for Q4XT60 as seed ortholog is 100%.
Bootstrap support for D3BJE1 as seed ortholog is 100%.

Group of orthologs #765. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.pallidum:70

Q4Y2H9              	100.00%		D3BMN9              	100.00%
Bootstrap support for Q4Y2H9 as seed ortholog is 100%.
Bootstrap support for D3BMN9 as seed ortholog is 100%.

Group of orthologs #766. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.pallidum:69

Q4XKX4              	100.00%		D3BHT1              	100.00%
                    	       		D3B7Q5              	5.86%
Bootstrap support for Q4XKX4 as seed ortholog is 100%.
Bootstrap support for D3BHT1 as seed ortholog is 100%.

Group of orthologs #767. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.pallidum:69

Q4X5Z7              	100.00%		D3BKI9              	100.00%
Bootstrap support for Q4X5Z7 as seed ortholog is 100%.
Bootstrap support for D3BKI9 as seed ortholog is 100%.

Group of orthologs #768. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.pallidum:69

Q4XWP4              	100.00%		D3BNR4              	100.00%
Bootstrap support for Q4XWP4 as seed ortholog is 100%.
Bootstrap support for D3BNR4 as seed ortholog is 100%.

Group of orthologs #769. Best score 68 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.pallidum:26

Q4XLM5              	100.00%		D3BMT2              	100.00%
Q4X2P4              	100.00%		D3BF67              	100.00%
Q4Y8K7              	76.51%		
Q4XTT4              	66.87%		
Bootstrap support for Q4XLM5 as seed ortholog is 100%.
Bootstrap support for Q4X2P4 as seed ortholog is 100%.
Bootstrap support for D3BMT2 as seed ortholog is 91%.
Bootstrap support for D3BF67 as seed ortholog is 85%.

Group of orthologs #770. Best score 68 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.pallidum:68

Q4Y1U3              	100.00%		D3BGY8              	100.00%
Bootstrap support for Q4Y1U3 as seed ortholog is 100%.
Bootstrap support for D3BGY8 as seed ortholog is 100%.

Group of orthologs #771. Best score 68 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.pallidum:68

Q4Y7D5              	100.00%		D3BKH9              	100.00%
Bootstrap support for Q4Y7D5 as seed ortholog is 100%.
Bootstrap support for D3BKH9 as seed ortholog is 100%.

Group of orthologs #772. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.pallidum:67

Q4Y119              	100.00%		D3BRH7              	100.00%
Q4X5Z2              	57.14%		
Bootstrap support for Q4Y119 as seed ortholog is 100%.
Bootstrap support for D3BRH7 as seed ortholog is 100%.

Group of orthologs #773. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.pallidum:3

Q4XKV3              	100.00%		D3BAT7              	100.00%
Bootstrap support for Q4XKV3 as seed ortholog is 100%.
Bootstrap support for D3BAT7 as seed ortholog is 59%.
Alternative seed ortholog is D3B6I2 (3 bits away from this cluster)

Group of orthologs #774. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.pallidum:67

Q4XYK1              	100.00%		D3BAB3              	100.00%
Bootstrap support for Q4XYK1 as seed ortholog is 100%.
Bootstrap support for D3BAB3 as seed ortholog is 100%.

Group of orthologs #775. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:10 P.pallidum:67

Q4Y0J9              	100.00%		D3BVK7              	100.00%
Bootstrap support for Q4Y0J9 as seed ortholog is 68%.
Alternative seed ortholog is Q4XS21 (10 bits away from this cluster)
Bootstrap support for D3BVK7 as seed ortholog is 100%.

Group of orthologs #776. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.pallidum:66

Q4X4Q4              	100.00%		D3BU12              	100.00%
Q4XLP8              	58.30%		
Bootstrap support for Q4X4Q4 as seed ortholog is 100%.
Bootstrap support for D3BU12 as seed ortholog is 100%.

Group of orthologs #777. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.pallidum:66

Q4XT37              	100.00%		D3BP03              	100.00%
                    	       		D3BPL3              	65.71%
Bootstrap support for Q4XT37 as seed ortholog is 100%.
Bootstrap support for D3BP03 as seed ortholog is 100%.

Group of orthologs #778. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.pallidum:25

Q4XXW0              	100.00%		D3B129              	100.00%
Bootstrap support for Q4XXW0 as seed ortholog is 100%.
Bootstrap support for D3B129 as seed ortholog is 77%.

Group of orthologs #779. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.pallidum:66

Q4Y5R9              	100.00%		D3AW12              	100.00%
Bootstrap support for Q4Y5R9 as seed ortholog is 100%.
Bootstrap support for D3AW12 as seed ortholog is 100%.

Group of orthologs #780. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.pallidum:66

Q4XGH5              	100.00%		D3BME5              	100.00%
Bootstrap support for Q4XGH5 as seed ortholog is 100%.
Bootstrap support for D3BME5 as seed ortholog is 100%.

Group of orthologs #781. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.pallidum:66

Q4Y0E1              	100.00%		D3BBD7              	100.00%
Bootstrap support for Q4Y0E1 as seed ortholog is 100%.
Bootstrap support for D3BBD7 as seed ortholog is 100%.

Group of orthologs #782. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:65 P.pallidum:65

Q4Y8C0              	100.00%		D3B4F9              	100.00%
Q4Y3A5              	8.49%		
Bootstrap support for Q4Y8C0 as seed ortholog is 100%.
Bootstrap support for D3B4F9 as seed ortholog is 100%.

Group of orthologs #783. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:65 P.pallidum:65

Q4XN44              	100.00%		D3BAT8              	100.00%
Bootstrap support for Q4XN44 as seed ortholog is 100%.
Bootstrap support for D3BAT8 as seed ortholog is 100%.

Group of orthologs #784. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:65 P.pallidum:12

Q4XZC8              	100.00%		D3B0G5              	100.00%
Bootstrap support for Q4XZC8 as seed ortholog is 100%.
Bootstrap support for D3B0G5 as seed ortholog is 64%.
Alternative seed ortholog is D3B0G3 (12 bits away from this cluster)

Group of orthologs #785. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:65 P.pallidum:65

Q4XYE9              	100.00%		D3BNF6              	100.00%
Bootstrap support for Q4XYE9 as seed ortholog is 100%.
Bootstrap support for D3BNF6 as seed ortholog is 100%.

Group of orthologs #786. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:65 P.pallidum:65

Q4XYV2              	100.00%		D3BSQ2              	100.00%
Bootstrap support for Q4XYV2 as seed ortholog is 100%.
Bootstrap support for D3BSQ2 as seed ortholog is 100%.

Group of orthologs #787. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.pallidum:64

Q4X5N9              	100.00%		D3BJI9              	100.00%
Bootstrap support for Q4X5N9 as seed ortholog is 100%.
Bootstrap support for D3BJI9 as seed ortholog is 100%.

Group of orthologs #788. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.pallidum:64

Q4XZC0              	100.00%		D3BNN0              	100.00%
Bootstrap support for Q4XZC0 as seed ortholog is 100%.
Bootstrap support for D3BNN0 as seed ortholog is 100%.

Group of orthologs #789. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.pallidum:63

Q4X329              	100.00%		D3BR00              	100.00%
                    	       		D3BR01              	46.98%
Bootstrap support for Q4X329 as seed ortholog is 100%.
Bootstrap support for D3BR00 as seed ortholog is 100%.

Group of orthologs #790. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.pallidum:63

Q4X5G1              	100.00%		D3BPV7              	100.00%
Bootstrap support for Q4X5G1 as seed ortholog is 100%.
Bootstrap support for D3BPV7 as seed ortholog is 100%.

Group of orthologs #791. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.pallidum:63

Q4XT01              	100.00%		D3B406              	100.00%
Bootstrap support for Q4XT01 as seed ortholog is 100%.
Bootstrap support for D3B406 as seed ortholog is 100%.

Group of orthologs #792. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:23 P.pallidum:7

Q4Y0L6              	100.00%		D3B1P2              	100.00%
Bootstrap support for Q4Y0L6 as seed ortholog is 84%.
Bootstrap support for D3B1P2 as seed ortholog is 57%.
Alternative seed ortholog is D3BPQ0 (7 bits away from this cluster)

Group of orthologs #793. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.pallidum:63

Q4XMY5              	100.00%		D3BHV3              	100.00%
Bootstrap support for Q4XMY5 as seed ortholog is 100%.
Bootstrap support for D3BHV3 as seed ortholog is 100%.

Group of orthologs #794. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:15

Q4XVP2              	100.00%		D3B9X7              	100.00%
                    	       		D3B3S1              	7.31%
                    	       		D3B9V4              	5.44%
Bootstrap support for Q4XVP2 as seed ortholog is 100%.
Bootstrap support for D3B9X7 as seed ortholog is 60%.
Alternative seed ortholog is D3BJJ9 (15 bits away from this cluster)

Group of orthologs #795. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:62

Q4XM83              	100.00%		D3BDR2              	100.00%
Q4XH85              	47.20%		
Bootstrap support for Q4XM83 as seed ortholog is 100%.
Bootstrap support for D3BDR2 as seed ortholog is 100%.

Group of orthologs #796. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:62

Q4X9Y0              	100.00%		D3BHI4              	100.00%
Bootstrap support for Q4X9Y0 as seed ortholog is 100%.
Bootstrap support for D3BHI4 as seed ortholog is 100%.

Group of orthologs #797. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:62

Q4XYP2              	100.00%		D3B2B2              	100.00%
Bootstrap support for Q4XYP2 as seed ortholog is 100%.
Bootstrap support for D3B2B2 as seed ortholog is 100%.

Group of orthologs #798. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:62

Q4XX48              	100.00%		D3BJ38              	100.00%
Bootstrap support for Q4XX48 as seed ortholog is 100%.
Bootstrap support for D3BJ38 as seed ortholog is 100%.

Group of orthologs #799. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.pallidum:62

Q4Y5F9              	100.00%		D3BAZ9              	100.00%
Bootstrap support for Q4Y5F9 as seed ortholog is 100%.
Bootstrap support for D3BAZ9 as seed ortholog is 100%.

Group of orthologs #800. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.pallidum:61

Q4X5C0              	100.00%		D3B356              	100.00%
Bootstrap support for Q4X5C0 as seed ortholog is 100%.
Bootstrap support for D3B356 as seed ortholog is 100%.

Group of orthologs #801. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.pallidum:61

Q4XQU6              	100.00%		D3B763              	100.00%
Bootstrap support for Q4XQU6 as seed ortholog is 100%.
Bootstrap support for D3B763 as seed ortholog is 100%.

Group of orthologs #802. Best score 60 bits
Score difference with first non-orthologous sequence - P.chabaudi:60 P.pallidum:60

Q4X6L9              	100.00%		D3B9X2              	100.00%
                    	       		D3B410              	8.53%
Bootstrap support for Q4X6L9 as seed ortholog is 100%.
Bootstrap support for D3B9X2 as seed ortholog is 100%.

Group of orthologs #803. Best score 60 bits
Score difference with first non-orthologous sequence - P.chabaudi:3 P.pallidum:60

Q4XT72              	100.00%		D3B7X6              	100.00%
Bootstrap support for Q4XT72 as seed ortholog is 46%.
Alternative seed ortholog is Q4XWH7 (3 bits away from this cluster)
Bootstrap support for D3B7X6 as seed ortholog is 100%.

Group of orthologs #804. Best score 60 bits
Score difference with first non-orthologous sequence - P.chabaudi:60 P.pallidum:60

Q4Y8Z4              	100.00%		D3BAQ1              	100.00%
Bootstrap support for Q4Y8Z4 as seed ortholog is 100%.
Bootstrap support for D3BAQ1 as seed ortholog is 100%.

Group of orthologs #805. Best score 60 bits
Score difference with first non-orthologous sequence - P.chabaudi:60 P.pallidum:60

Q4Y4N3              	100.00%		D3BSK1              	100.00%
Bootstrap support for Q4Y4N3 as seed ortholog is 100%.
Bootstrap support for D3BSK1 as seed ortholog is 100%.

Group of orthologs #806. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:59

Q4XM52              	100.00%		D3BRT3              	100.00%
                    	       		D3BFR6              	53.18%
Bootstrap support for Q4XM52 as seed ortholog is 100%.
Bootstrap support for D3BRT3 as seed ortholog is 100%.

Group of orthologs #807. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:59

Q4XQR5              	100.00%		D3B0J7              	100.00%
Bootstrap support for Q4XQR5 as seed ortholog is 100%.
Bootstrap support for D3B0J7 as seed ortholog is 100%.

Group of orthologs #808. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:59

Q4Y282              	100.00%		D3B9L3              	100.00%
Bootstrap support for Q4Y282 as seed ortholog is 100%.
Bootstrap support for D3B9L3 as seed ortholog is 100%.

Group of orthologs #809. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:59

Q4XL10              	100.00%		D3BTW1              	100.00%
Bootstrap support for Q4XL10 as seed ortholog is 100%.
Bootstrap support for D3BTW1 as seed ortholog is 100%.

Group of orthologs #810. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:59

Q4Y4S3              	100.00%		D3BF90              	100.00%
Bootstrap support for Q4Y4S3 as seed ortholog is 100%.
Bootstrap support for D3BF90 as seed ortholog is 100%.

Group of orthologs #811. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.pallidum:59

Q4Y0M0              	100.00%		D3BPL1              	100.00%
Bootstrap support for Q4Y0M0 as seed ortholog is 100%.
Bootstrap support for D3BPL1 as seed ortholog is 100%.

Group of orthologs #812. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.pallidum:58

Q4XWX5              	100.00%		D3BDM9              	100.00%
Bootstrap support for Q4XWX5 as seed ortholog is 100%.
Bootstrap support for D3BDM9 as seed ortholog is 100%.

Group of orthologs #813. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.pallidum:58

Q4XZU9              	100.00%		D3BEI5              	100.00%
Bootstrap support for Q4XZU9 as seed ortholog is 100%.
Bootstrap support for D3BEI5 as seed ortholog is 100%.

Group of orthologs #814. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.pallidum:57

Q4X9X0              	100.00%		D3BFC5              	100.00%
Q4XU55              	6.42%		
Bootstrap support for Q4X9X0 as seed ortholog is 100%.
Bootstrap support for D3BFC5 as seed ortholog is 100%.

Group of orthologs #815. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.pallidum:57

Q4XQD2              	100.00%		D3BSC4              	100.00%
Q4XAY5              	50.00%		
Bootstrap support for Q4XQD2 as seed ortholog is 100%.
Bootstrap support for D3BSC4 as seed ortholog is 100%.

Group of orthologs #816. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.pallidum:57

Q4Y8N6              	100.00%		D3AY73              	100.00%
Bootstrap support for Q4Y8N6 as seed ortholog is 100%.
Bootstrap support for D3AY73 as seed ortholog is 100%.

Group of orthologs #817. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.pallidum:57

Q4Y757              	100.00%		D3BJ80              	100.00%
Bootstrap support for Q4Y757 as seed ortholog is 100%.
Bootstrap support for D3BJ80 as seed ortholog is 100%.

Group of orthologs #818. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.pallidum:56

Q4Y0K9              	100.00%		D3BVE2              	100.00%
Q4XSD3              	37.65%		D3BVE5              	29.93%
Q4XVC8              	18.90%		
Q4X817              	18.15%		
Q4XM16              	17.41%		
Bootstrap support for Q4Y0K9 as seed ortholog is 100%.
Bootstrap support for D3BVE2 as seed ortholog is 100%.

Group of orthologs #819. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.pallidum:56

Q4XIR5              	100.00%		D3B556              	100.00%
                    	       		D3BE69              	6.90%
Bootstrap support for Q4XIR5 as seed ortholog is 100%.
Bootstrap support for D3B556 as seed ortholog is 100%.

Group of orthologs #820. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.pallidum:56

Q4Y1S5              	100.00%		D3B646              	100.00%
Q4XB79              	57.54%		
Bootstrap support for Q4Y1S5 as seed ortholog is 100%.
Bootstrap support for D3B646 as seed ortholog is 100%.

Group of orthologs #821. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.pallidum:4

Q4X5G5              	100.00%		D3BFD9              	100.00%
Bootstrap support for Q4X5G5 as seed ortholog is 100%.
Bootstrap support for D3BFD9 as seed ortholog is 59%.
Alternative seed ortholog is D3BEB9 (4 bits away from this cluster)

Group of orthologs #822. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.pallidum:56

Q4X5B5              	100.00%		D3BNC8              	100.00%
Bootstrap support for Q4X5B5 as seed ortholog is 100%.
Bootstrap support for D3BNC8 as seed ortholog is 100%.

Group of orthologs #823. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.pallidum:55

Q4XDU9              	100.00%		D3B1P7              	100.00%
Q4XNM0              	100.00%		
Q4Y8T5              	12.56%		
Bootstrap support for Q4XDU9 as seed ortholog is 100%.
Bootstrap support for Q4XNM0 as seed ortholog is 100%.
Bootstrap support for D3B1P7 as seed ortholog is 100%.

Group of orthologs #824. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.pallidum:55

Q4X888              	100.00%		D3B2P0              	100.00%
Q4Y6S1              	96.65%		
Bootstrap support for Q4X888 as seed ortholog is 100%.
Bootstrap support for D3B2P0 as seed ortholog is 100%.

Group of orthologs #825. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.pallidum:55

Q4X566              	100.00%		D3BV20              	100.00%
                    	       		D3AZ65              	19.72%
Bootstrap support for Q4X566 as seed ortholog is 100%.
Bootstrap support for D3BV20 as seed ortholog is 100%.

Group of orthologs #826. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.pallidum:55

Q4XDX6              	100.00%		D3BJT6              	100.00%
Bootstrap support for Q4XDX6 as seed ortholog is 100%.
Bootstrap support for D3BJT6 as seed ortholog is 100%.

Group of orthologs #827. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.pallidum:55

Q4XW53              	100.00%		D3B6R0              	100.00%
Bootstrap support for Q4XW53 as seed ortholog is 100%.
Bootstrap support for D3B6R0 as seed ortholog is 100%.

Group of orthologs #828. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.pallidum:55

Q4Y5I5              	100.00%		D3BQ25              	100.00%
Bootstrap support for Q4Y5I5 as seed ortholog is 100%.
Bootstrap support for D3BQ25 as seed ortholog is 100%.

Group of orthologs #829. Best score 54 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.pallidum:54

Q4Y353              	100.00%		D3BEE9              	100.00%
Bootstrap support for Q4Y353 as seed ortholog is 100%.
Bootstrap support for D3BEE9 as seed ortholog is 100%.

Group of orthologs #830. Best score 53 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.pallidum:53

Q4XNY0              	100.00%		D3AVN0              	100.00%
Bootstrap support for Q4XNY0 as seed ortholog is 100%.
Bootstrap support for D3AVN0 as seed ortholog is 100%.

Group of orthologs #831. Best score 53 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.pallidum:53

Q4XW81              	100.00%		D3BCT9              	100.00%
Bootstrap support for Q4XW81 as seed ortholog is 100%.
Bootstrap support for D3BCT9 as seed ortholog is 100%.

Group of orthologs #832. Best score 53 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.pallidum:53

Q4XYI0              	100.00%		D3BUE2              	100.00%
Bootstrap support for Q4XYI0 as seed ortholog is 100%.
Bootstrap support for D3BUE2 as seed ortholog is 100%.

Group of orthologs #833. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:52

Q4X569              	100.00%		D3B723              	100.00%
Bootstrap support for Q4X569 as seed ortholog is 100%.
Bootstrap support for D3B723 as seed ortholog is 100%.

Group of orthologs #834. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:0 P.pallidum:52

Q4XEL1              	100.00%		D3B8P5              	100.00%
Bootstrap support for Q4XEL1 as seed ortholog is 47%.
Alternative seed ortholog is Q4XWG1 (0 bits away from this cluster)
Bootstrap support for D3B8P5 as seed ortholog is 100%.

Group of orthologs #835. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:52

Q4XS93              	100.00%		D3B5K9              	100.00%
Bootstrap support for Q4XS93 as seed ortholog is 100%.
Bootstrap support for D3B5K9 as seed ortholog is 100%.

Group of orthologs #836. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:52

Q4XK14              	100.00%		D3BEA7              	100.00%
Bootstrap support for Q4XK14 as seed ortholog is 100%.
Bootstrap support for D3BEA7 as seed ortholog is 100%.

Group of orthologs #837. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:7

Q4Y289              	100.00%		D3AXL9              	100.00%
Bootstrap support for Q4Y289 as seed ortholog is 100%.
Bootstrap support for D3AXL9 as seed ortholog is 68%.
Alternative seed ortholog is D3AZA5 (7 bits away from this cluster)

Group of orthologs #838. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:5

Q4XXT6              	100.00%		D3BKV9              	100.00%
Bootstrap support for Q4XXT6 as seed ortholog is 100%.
Bootstrap support for D3BKV9 as seed ortholog is 57%.
Alternative seed ortholog is D3BVR5 (5 bits away from this cluster)

Group of orthologs #839. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.pallidum:52

Q4Y8S3              	100.00%		D3BEI4              	100.00%
Bootstrap support for Q4Y8S3 as seed ortholog is 100%.
Bootstrap support for D3BEI4 as seed ortholog is 100%.

Group of orthologs #840. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.pallidum:51

Q4Y0Y0              	100.00%		D3AVJ2              	100.00%
Bootstrap support for Q4Y0Y0 as seed ortholog is 100%.
Bootstrap support for D3AVJ2 as seed ortholog is 100%.

Group of orthologs #841. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.pallidum:51

Q4Y719              	100.00%		D3BIU2              	100.00%
Bootstrap support for Q4Y719 as seed ortholog is 100%.
Bootstrap support for D3BIU2 as seed ortholog is 100%.

Group of orthologs #842. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.pallidum:51

Q4Y1N8              	100.00%		D3BT20              	100.00%
Bootstrap support for Q4Y1N8 as seed ortholog is 100%.
Bootstrap support for D3BT20 as seed ortholog is 100%.

Group of orthologs #843. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:50

Q4XYM3              	100.00%		D3BB70              	100.00%
Q4X628              	58.97%		
Bootstrap support for Q4XYM3 as seed ortholog is 100%.
Bootstrap support for D3BB70 as seed ortholog is 100%.

Group of orthologs #844. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:50

Q4XS30              	100.00%		D3BNS7              	100.00%
                    	       		D3B5T3              	9.07%
Bootstrap support for Q4XS30 as seed ortholog is 100%.
Bootstrap support for D3BNS7 as seed ortholog is 100%.

Group of orthologs #845. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:50

Q4XYY7              	100.00%		D3BJR3              	100.00%
Q4XYY8              	97.79%		
Bootstrap support for Q4XYY7 as seed ortholog is 100%.
Bootstrap support for D3BJR3 as seed ortholog is 100%.

Group of orthologs #846. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:50

Q4X2G3              	100.00%		D3BK25              	100.00%
Bootstrap support for Q4X2G3 as seed ortholog is 100%.
Bootstrap support for D3BK25 as seed ortholog is 100%.

Group of orthologs #847. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:50

Q4XQE4              	100.00%		D3BJ55              	100.00%
Bootstrap support for Q4XQE4 as seed ortholog is 100%.
Bootstrap support for D3BJ55 as seed ortholog is 100%.

Group of orthologs #848. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:2

Q4XP54              	100.00%		D3BL88              	100.00%
Bootstrap support for Q4XP54 as seed ortholog is 100%.
Bootstrap support for D3BL88 as seed ortholog is 49%.
Alternative seed ortholog is D3BA99 (2 bits away from this cluster)

Group of orthologs #849. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.pallidum:50

Q4Y8Z0              	100.00%		D3BJI3              	100.00%
Bootstrap support for Q4Y8Z0 as seed ortholog is 100%.
Bootstrap support for D3BJI3 as seed ortholog is 100%.

Group of orthologs #850. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.pallidum:49

Q4XN23              	100.00%		D3BFK4              	100.00%
Bootstrap support for Q4XN23 as seed ortholog is 100%.
Bootstrap support for D3BFK4 as seed ortholog is 100%.

Group of orthologs #851. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.pallidum:49

Q4Y471              	100.00%		D3BCL9              	100.00%
Bootstrap support for Q4Y471 as seed ortholog is 100%.
Bootstrap support for D3BCL9 as seed ortholog is 100%.

Group of orthologs #852. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.pallidum:48

Q4X6W0              	100.00%		D3B7L8              	100.00%
Q4XTG3              	39.37%		D3BQC7              	47.80%
Q4XW35              	28.92%		D3BR71              	47.47%
Bootstrap support for Q4X6W0 as seed ortholog is 100%.
Bootstrap support for D3B7L8 as seed ortholog is 100%.

Group of orthologs #853. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.pallidum:48

Q4XZX9              	100.00%		D3B498              	100.00%
                    	       		D3BFW6              	14.70%
Bootstrap support for Q4XZX9 as seed ortholog is 100%.
Bootstrap support for D3B498 as seed ortholog is 100%.

Group of orthologs #854. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.pallidum:8

Q4XNK9              	100.00%		D3BKZ3              	100.00%
                    	       		D3BHC0              	5.05%
Bootstrap support for Q4XNK9 as seed ortholog is 100%.
Bootstrap support for D3BKZ3 as seed ortholog is 62%.
Alternative seed ortholog is D3AYP2 (8 bits away from this cluster)

Group of orthologs #855. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.pallidum:48

Q4XX09              	100.00%		D3B0T5              	100.00%
Bootstrap support for Q4XX09 as seed ortholog is 100%.
Bootstrap support for D3B0T5 as seed ortholog is 100%.

Group of orthologs #856. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.pallidum:48

Q4Y516              	100.00%		D3AY40              	100.00%
Bootstrap support for Q4Y516 as seed ortholog is 100%.
Bootstrap support for D3AY40 as seed ortholog is 100%.

Group of orthologs #857. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:1 P.pallidum:47

Q4XRT4              	100.00%		D3BF08              	100.00%
Q4XQX9              	13.99%		
Bootstrap support for Q4XRT4 as seed ortholog is 53%.
Alternative seed ortholog is Q4XFX6 (1 bits away from this cluster)
Bootstrap support for D3BF08 as seed ortholog is 100%.

Group of orthologs #858. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.pallidum:47

Q4Y5X8              	100.00%		D3AWT5              	100.00%
Bootstrap support for Q4Y5X8 as seed ortholog is 100%.
Bootstrap support for D3AWT5 as seed ortholog is 100%.

Group of orthologs #859. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.pallidum:47

Q4XQE5              	100.00%		D3BDZ5              	100.00%
Bootstrap support for Q4XQE5 as seed ortholog is 100%.
Bootstrap support for D3BDZ5 as seed ortholog is 100%.

Group of orthologs #860. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.pallidum:46

Q4Y2K0              	100.00%		D3B5D3              	100.00%
Q4X5R3              	6.12%		D3BKC0              	7.06%
Bootstrap support for Q4Y2K0 as seed ortholog is 100%.
Bootstrap support for D3B5D3 as seed ortholog is 100%.

Group of orthologs #861. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.pallidum:46

Q4XC32              	100.00%		D3BHG7              	100.00%
Bootstrap support for Q4XC32 as seed ortholog is 100%.
Bootstrap support for D3BHG7 as seed ortholog is 100%.

Group of orthologs #862. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.pallidum:46

Q4XF82              	100.00%		D3BKA6              	100.00%
Bootstrap support for Q4XF82 as seed ortholog is 100%.
Bootstrap support for D3BKA6 as seed ortholog is 100%.

Group of orthologs #863. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.pallidum:46

Q4Y5T7              	100.00%		D3BLX9              	100.00%
Bootstrap support for Q4Y5T7 as seed ortholog is 100%.
Bootstrap support for D3BLX9 as seed ortholog is 100%.

Group of orthologs #864. Best score 45 bits
Score difference with first non-orthologous sequence - P.chabaudi:45 P.pallidum:45

Q4Y4B6              	100.00%		D3BBP7              	100.00%
                    	       		D3BP85              	11.25%
                    	       		D3BTM6              	7.40%
                    	       		D3BBN9              	6.96%
                    	       		D3B589              	6.74%
                    	       		D3AZJ0              	6.51%
                    	       		D3BCQ2              	5.85%
                    	       		D3BD64              	5.11%
Bootstrap support for Q4Y4B6 as seed ortholog is 100%.
Bootstrap support for D3BBP7 as seed ortholog is 100%.

Group of orthologs #865. Best score 45 bits
Score difference with first non-orthologous sequence - P.chabaudi:45 P.pallidum:45

Q4XX99              	100.00%		D3BEM8              	100.00%
Bootstrap support for Q4XX99 as seed ortholog is 100%.
Bootstrap support for D3BEM8 as seed ortholog is 100%.

Group of orthologs #866. Best score 45 bits
Score difference with first non-orthologous sequence - P.chabaudi:45 P.pallidum:45

Q4Y768              	100.00%		D3BVD4              	100.00%
Bootstrap support for Q4Y768 as seed ortholog is 100%.
Bootstrap support for D3BVD4 as seed ortholog is 100%.

Group of orthologs #867. Best score 43 bits
Score difference with first non-orthologous sequence - P.chabaudi:43 P.pallidum:1

Q4X6V2              	100.00%		D3BUW6              	100.00%
Q4XPI9              	63.94%		
Q4XW37              	10.78%		
Bootstrap support for Q4X6V2 as seed ortholog is 100%.
Bootstrap support for D3BUW6 as seed ortholog is 50%.
Alternative seed ortholog is D3BCP0 (1 bits away from this cluster)

Group of orthologs #868. Best score 43 bits
Score difference with first non-orthologous sequence - P.chabaudi:43 P.pallidum:43

Q4XQK5              	100.00%		D3BHP4              	100.00%
Q4X6G9              	60.12%		
Bootstrap support for Q4XQK5 as seed ortholog is 100%.
Bootstrap support for D3BHP4 as seed ortholog is 100%.

Group of orthologs #869. Best score 43 bits
Score difference with first non-orthologous sequence - P.chabaudi:43 P.pallidum:43

Q4XRY3              	100.00%		D3BG34              	100.00%
Bootstrap support for Q4XRY3 as seed ortholog is 100%.
Bootstrap support for D3BG34 as seed ortholog is 100%.

Group of orthologs #870. Best score 42 bits
Score difference with first non-orthologous sequence - P.chabaudi:42 P.pallidum:42

Q4X5R4              	100.00%		D3B644              	100.00%
Q4XCD9              	8.66%		
Bootstrap support for Q4X5R4 as seed ortholog is 100%.
Bootstrap support for D3B644 as seed ortholog is 100%.

Group of orthologs #871. Best score 40 bits
Score difference with first non-orthologous sequence - P.chabaudi:40 P.pallidum:40

Q4XGP2              	100.00%		D3BU78              	100.00%
Bootstrap support for Q4XGP2 as seed ortholog is 100%.
Bootstrap support for D3BU78 as seed ortholog is 100%.