###################################
667 groups of orthologs
752 in-paralogs from P.chabaudi
717 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 1114 bits
Score difference with first non-orthologous sequence - P.chabaudi:1114 P.jiroveci:1114

Q4Y4H6              	100.00%		L0P7C3              	100.00%
Bootstrap support for Q4Y4H6 as seed ortholog is 100%.
Bootstrap support for L0P7C3 as seed ortholog is 100%.

Group of orthologs #2. Best score 896 bits
Score difference with first non-orthologous sequence - P.chabaudi:896 P.jiroveci:896

Q4XUB3              	100.00%		L0PHB1              	100.00%
Bootstrap support for Q4XUB3 as seed ortholog is 100%.
Bootstrap support for L0PHB1 as seed ortholog is 100%.

Group of orthologs #3. Best score 795 bits
Score difference with first non-orthologous sequence - P.chabaudi:392 P.jiroveci:171

Q4XZQ8              	100.00%		L0PFC8              	100.00%
Bootstrap support for Q4XZQ8 as seed ortholog is 100%.
Bootstrap support for L0PFC8 as seed ortholog is 99%.

Group of orthologs #4. Best score 754 bits
Score difference with first non-orthologous sequence - P.chabaudi:754 P.jiroveci:754

Q4Y395              	100.00%		L0PG53              	100.00%
Bootstrap support for Q4Y395 as seed ortholog is 100%.
Bootstrap support for L0PG53 as seed ortholog is 100%.

Group of orthologs #5. Best score 716 bits
Score difference with first non-orthologous sequence - P.chabaudi:716 P.jiroveci:716

Q4XFG0              	100.00%		L0PDK3              	100.00%
Bootstrap support for Q4XFG0 as seed ortholog is 100%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #6. Best score 699 bits
Score difference with first non-orthologous sequence - P.chabaudi:576 P.jiroveci:175

Q4XE94              	100.00%		L0PDB3              	100.00%
Bootstrap support for Q4XE94 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 99%.

Group of orthologs #7. Best score 684 bits
Score difference with first non-orthologous sequence - P.chabaudi:684 P.jiroveci:684

Q4Y8Y8              	100.00%		L0P818              	100.00%
Bootstrap support for Q4Y8Y8 as seed ortholog is 100%.
Bootstrap support for L0P818 as seed ortholog is 100%.

Group of orthologs #8. Best score 628 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:628

Q4XZ91              	100.00%		L0P9C7              	100.00%
Bootstrap support for Q4XZ91 as seed ortholog is 99%.
Bootstrap support for L0P9C7 as seed ortholog is 100%.

Group of orthologs #9. Best score 623 bits
Score difference with first non-orthologous sequence - P.chabaudi:567 P.jiroveci:623

Q4XY83              	100.00%		L0PEP7              	100.00%
Bootstrap support for Q4XY83 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #10. Best score 617 bits
Score difference with first non-orthologous sequence - P.chabaudi:617 P.jiroveci:617

Q4XYQ6              	100.00%		L0PCC4              	100.00%
Bootstrap support for Q4XYQ6 as seed ortholog is 100%.
Bootstrap support for L0PCC4 as seed ortholog is 100%.

Group of orthologs #11. Best score 604 bits
Score difference with first non-orthologous sequence - P.chabaudi:604 P.jiroveci:604

Q4XWB3              	100.00%		L0P915              	100.00%
Bootstrap support for Q4XWB3 as seed ortholog is 100%.
Bootstrap support for L0P915 as seed ortholog is 100%.

Group of orthologs #12. Best score 597 bits
Score difference with first non-orthologous sequence - P.chabaudi:406 P.jiroveci:405

Q4XU36              	100.00%		L0P853              	100.00%
                    	       		L0P8M8              	55.04%
Bootstrap support for Q4XU36 as seed ortholog is 100%.
Bootstrap support for L0P853 as seed ortholog is 100%.

Group of orthologs #13. Best score 593 bits
Score difference with first non-orthologous sequence - P.chabaudi:593 P.jiroveci:593

Q4XQQ6              	100.00%		L0PF66              	100.00%
Bootstrap support for Q4XQQ6 as seed ortholog is 100%.
Bootstrap support for L0PF66 as seed ortholog is 100%.

Group of orthologs #14. Best score 573 bits
Score difference with first non-orthologous sequence - P.chabaudi:405 P.jiroveci:392

Q4X2J7              	100.00%		L0PG45              	100.00%
Bootstrap support for Q4X2J7 as seed ortholog is 100%.
Bootstrap support for L0PG45 as seed ortholog is 100%.

Group of orthologs #15. Best score 573 bits
Score difference with first non-orthologous sequence - P.chabaudi:573 P.jiroveci:573

Q4XZ30              	100.00%		L0P7X5              	100.00%
Bootstrap support for Q4XZ30 as seed ortholog is 100%.
Bootstrap support for L0P7X5 as seed ortholog is 100%.

Group of orthologs #16. Best score 570 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.jiroveci:319

Q4Y6S3              	100.00%		L0PBP8              	100.00%
Bootstrap support for Q4Y6S3 as seed ortholog is 99%.
Bootstrap support for L0PBP8 as seed ortholog is 100%.

Group of orthologs #17. Best score 565 bits
Score difference with first non-orthologous sequence - P.chabaudi:402 P.jiroveci:394

Q4XT93              	100.00%		L0PER6              	100.00%
Bootstrap support for Q4XT93 as seed ortholog is 100%.
Bootstrap support for L0PER6 as seed ortholog is 100%.

Group of orthologs #18. Best score 554 bits
Score difference with first non-orthologous sequence - P.chabaudi:554 P.jiroveci:554

Q4XYV8              	100.00%		L0PGI2              	100.00%
Bootstrap support for Q4XYV8 as seed ortholog is 100%.
Bootstrap support for L0PGI2 as seed ortholog is 100%.

Group of orthologs #19. Best score 539 bits
Score difference with first non-orthologous sequence - P.chabaudi:539 P.jiroveci:163

Q4X5R7              	100.00%		L0PDF1              	100.00%
Bootstrap support for Q4X5R7 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #20. Best score 527 bits
Score difference with first non-orthologous sequence - P.chabaudi:337 P.jiroveci:351

Q4XPC8              	100.00%		L0PGA5              	100.00%
Bootstrap support for Q4XPC8 as seed ortholog is 100%.
Bootstrap support for L0PGA5 as seed ortholog is 100%.

Group of orthologs #21. Best score 527 bits
Score difference with first non-orthologous sequence - P.chabaudi:527 P.jiroveci:233

Q4XYB8              	100.00%		L0PFG7              	100.00%
Bootstrap support for Q4XYB8 as seed ortholog is 100%.
Bootstrap support for L0PFG7 as seed ortholog is 99%.

Group of orthologs #22. Best score 525 bits
Score difference with first non-orthologous sequence - P.chabaudi:525 P.jiroveci:109

Q4XPJ8              	100.00%		L0PEL5              	100.00%
                    	       		L0PGC2              	56.21%
Bootstrap support for Q4XPJ8 as seed ortholog is 100%.
Bootstrap support for L0PEL5 as seed ortholog is 96%.

Group of orthologs #23. Best score 515 bits
Score difference with first non-orthologous sequence - P.chabaudi:515 P.jiroveci:166

Q4Y279              	100.00%		L0PB85              	100.00%
Bootstrap support for Q4Y279 as seed ortholog is 100%.
Bootstrap support for L0PB85 as seed ortholog is 99%.

Group of orthologs #24. Best score 515 bits
Score difference with first non-orthologous sequence - P.chabaudi:515 P.jiroveci:515

Q4Y155              	100.00%		L0PDQ4              	100.00%
Bootstrap support for Q4Y155 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #25. Best score 514 bits
Score difference with first non-orthologous sequence - P.chabaudi:514 P.jiroveci:363

Q4Y0Z2              	100.00%		L0PCR2              	100.00%
Bootstrap support for Q4Y0Z2 as seed ortholog is 100%.
Bootstrap support for L0PCR2 as seed ortholog is 100%.

Group of orthologs #26. Best score 512 bits
Score difference with first non-orthologous sequence - P.chabaudi:512 P.jiroveci:458

Q4XLH2              	100.00%		L0P7V1              	100.00%
Bootstrap support for Q4XLH2 as seed ortholog is 100%.
Bootstrap support for L0P7V1 as seed ortholog is 100%.

Group of orthologs #27. Best score 509 bits
Score difference with first non-orthologous sequence - P.chabaudi:303 P.jiroveci:306

Q4XWN4              	100.00%		L0P8E7              	100.00%
Bootstrap support for Q4XWN4 as seed ortholog is 100%.
Bootstrap support for L0P8E7 as seed ortholog is 100%.

Group of orthologs #28. Best score 509 bits
Score difference with first non-orthologous sequence - P.chabaudi:317 P.jiroveci:316

Q4Y5M9              	100.00%		L0P976              	100.00%
Bootstrap support for Q4Y5M9 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 100%.

Group of orthologs #29. Best score 490 bits
Score difference with first non-orthologous sequence - P.chabaudi:325 P.jiroveci:231

Q4XZL6              	100.00%		L0PAR0              	100.00%
Bootstrap support for Q4XZL6 as seed ortholog is 100%.
Bootstrap support for L0PAR0 as seed ortholog is 100%.

Group of orthologs #30. Best score 490 bits
Score difference with first non-orthologous sequence - P.chabaudi:236 P.jiroveci:300

Q4Y8N2              	100.00%		L0PCT0              	100.00%
Bootstrap support for Q4Y8N2 as seed ortholog is 99%.
Bootstrap support for L0PCT0 as seed ortholog is 100%.

Group of orthologs #31. Best score 488 bits
Score difference with first non-orthologous sequence - P.chabaudi:221 P.jiroveci:417

Q4XRU6              	100.00%		L0PDM6              	100.00%
Bootstrap support for Q4XRU6 as seed ortholog is 100%.
Bootstrap support for L0PDM6 as seed ortholog is 100%.

Group of orthologs #32. Best score 483 bits
Score difference with first non-orthologous sequence - P.chabaudi:270 P.jiroveci:187

Q4Y2D6              	100.00%		L0PA75              	100.00%
Bootstrap support for Q4Y2D6 as seed ortholog is 100%.
Bootstrap support for L0PA75 as seed ortholog is 99%.

Group of orthologs #33. Best score 478 bits
Score difference with first non-orthologous sequence - P.chabaudi:399 P.jiroveci:283

Q4Y7S9              	100.00%		L0PBA5              	100.00%
Bootstrap support for Q4Y7S9 as seed ortholog is 100%.
Bootstrap support for L0PBA5 as seed ortholog is 100%.

Group of orthologs #34. Best score 477 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.jiroveci:477

Q4Y4B0              	100.00%		L0PAW9              	100.00%
                    	       		L0PBZ0              	100.00%
Bootstrap support for Q4Y4B0 as seed ortholog is 99%.
Bootstrap support for L0PAW9 as seed ortholog is 100%.
Bootstrap support for L0PBZ0 as seed ortholog is 100%.

Group of orthologs #35. Best score 467 bits
Score difference with first non-orthologous sequence - P.chabaudi:467 P.jiroveci:467

Q4Y1F8              	100.00%		L0PCV7              	100.00%
Q4Y7F2              	77.91%		
Bootstrap support for Q4Y1F8 as seed ortholog is 100%.
Bootstrap support for L0PCV7 as seed ortholog is 100%.

Group of orthologs #36. Best score 467 bits
Score difference with first non-orthologous sequence - P.chabaudi:467 P.jiroveci:263

Q4Y517              	100.00%		L0PH85              	100.00%
Bootstrap support for Q4Y517 as seed ortholog is 100%.
Bootstrap support for L0PH85 as seed ortholog is 100%.

Group of orthologs #37. Best score 462 bits
Score difference with first non-orthologous sequence - P.chabaudi:462 P.jiroveci:180

Q4XUX8              	100.00%		L0PA62              	100.00%
Bootstrap support for Q4XUX8 as seed ortholog is 100%.
Bootstrap support for L0PA62 as seed ortholog is 99%.

Group of orthologs #38. Best score 461 bits
Score difference with first non-orthologous sequence - P.chabaudi:461 P.jiroveci:320

Q4XU41              	100.00%		L0P8C8              	100.00%
Bootstrap support for Q4XU41 as seed ortholog is 100%.
Bootstrap support for L0P8C8 as seed ortholog is 100%.

Group of orthologs #39. Best score 460 bits
Score difference with first non-orthologous sequence - P.chabaudi:460 P.jiroveci:460

Q4XZN7              	100.00%		L0P7N3              	100.00%
Bootstrap support for Q4XZN7 as seed ortholog is 100%.
Bootstrap support for L0P7N3 as seed ortholog is 100%.

Group of orthologs #40. Best score 457 bits
Score difference with first non-orthologous sequence - P.chabaudi:348 P.jiroveci:309

Q4X567              	100.00%		L0P9G2              	100.00%
Bootstrap support for Q4X567 as seed ortholog is 100%.
Bootstrap support for L0P9G2 as seed ortholog is 100%.

Group of orthologs #41. Best score 457 bits
Score difference with first non-orthologous sequence - P.chabaudi:457 P.jiroveci:372

Q4XW16              	100.00%		L0PBJ1              	100.00%
Bootstrap support for Q4XW16 as seed ortholog is 100%.
Bootstrap support for L0PBJ1 as seed ortholog is 100%.

Group of orthologs #42. Best score 451 bits
Score difference with first non-orthologous sequence - P.chabaudi:214 P.jiroveci:451

Q4Y3W8              	100.00%		L0P9I8              	100.00%
Bootstrap support for Q4Y3W8 as seed ortholog is 100%.
Bootstrap support for L0P9I8 as seed ortholog is 100%.

Group of orthologs #43. Best score 450 bits
Score difference with first non-orthologous sequence - P.chabaudi:450 P.jiroveci:152

Q4X5F2              	100.00%		L0PCK5              	100.00%
                    	       		L0PGY9              	13.82%
Bootstrap support for Q4X5F2 as seed ortholog is 100%.
Bootstrap support for L0PCK5 as seed ortholog is 99%.

Group of orthologs #44. Best score 450 bits
Score difference with first non-orthologous sequence - P.chabaudi:450 P.jiroveci:450

Q4XWN8              	100.00%		L0P7U1              	100.00%
                    	       		L0PCK0              	100.00%
Bootstrap support for Q4XWN8 as seed ortholog is 100%.
Bootstrap support for L0P7U1 as seed ortholog is 100%.
Bootstrap support for L0PCK0 as seed ortholog is 100%.

Group of orthologs #45. Best score 445 bits
Score difference with first non-orthologous sequence - P.chabaudi:376 P.jiroveci:200

Q4XWL2              	100.00%		L0PE26              	100.00%
Bootstrap support for Q4XWL2 as seed ortholog is 100%.
Bootstrap support for L0PE26 as seed ortholog is 100%.

Group of orthologs #46. Best score 442 bits
Score difference with first non-orthologous sequence - P.chabaudi:442 P.jiroveci:374

Q4XQP7              	100.00%		L0PBW1              	100.00%
Bootstrap support for Q4XQP7 as seed ortholog is 100%.
Bootstrap support for L0PBW1 as seed ortholog is 100%.

Group of orthologs #47. Best score 442 bits
Score difference with first non-orthologous sequence - P.chabaudi:442 P.jiroveci:442

Q4Y492              	100.00%		L0P8R6              	100.00%
Bootstrap support for Q4Y492 as seed ortholog is 100%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #48. Best score 430 bits
Score difference with first non-orthologous sequence - P.chabaudi:254 P.jiroveci:298

Q4XRB1              	100.00%		L0P7V6              	100.00%
Bootstrap support for Q4XRB1 as seed ortholog is 100%.
Bootstrap support for L0P7V6 as seed ortholog is 100%.

Group of orthologs #49. Best score 430 bits
Score difference with first non-orthologous sequence - P.chabaudi:430 P.jiroveci:142

Q4XYN5              	100.00%		L0PBV5              	100.00%
Bootstrap support for Q4XYN5 as seed ortholog is 100%.
Bootstrap support for L0PBV5 as seed ortholog is 99%.

Group of orthologs #50. Best score 427 bits
Score difference with first non-orthologous sequence - P.chabaudi:298 P.jiroveci:139

Q4Y6T8              	100.00%		L0PBE4              	100.00%
Bootstrap support for Q4Y6T8 as seed ortholog is 100%.
Bootstrap support for L0PBE4 as seed ortholog is 99%.

Group of orthologs #51. Best score 422 bits
Score difference with first non-orthologous sequence - P.chabaudi:422 P.jiroveci:422

Q4XZZ5              	100.00%		L0PDJ1              	100.00%
Bootstrap support for Q4XZZ5 as seed ortholog is 100%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #52. Best score 421 bits
Score difference with first non-orthologous sequence - P.chabaudi:421 P.jiroveci:421

Q4XT92              	100.00%		L0P9S1              	100.00%
Bootstrap support for Q4XT92 as seed ortholog is 100%.
Bootstrap support for L0P9S1 as seed ortholog is 100%.

Group of orthologs #53. Best score 420 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.jiroveci:420

Q4XZ31              	100.00%		L0PF72              	100.00%
                    	       		L0P9J9              	8.81%
Bootstrap support for Q4XZ31 as seed ortholog is 92%.
Bootstrap support for L0PF72 as seed ortholog is 100%.

Group of orthologs #54. Best score 418 bits
Score difference with first non-orthologous sequence - P.chabaudi:418 P.jiroveci:418

Q4X3C6              	100.00%		L0PBR9              	100.00%
Bootstrap support for Q4X3C6 as seed ortholog is 100%.
Bootstrap support for L0PBR9 as seed ortholog is 100%.

Group of orthologs #55. Best score 418 bits
Score difference with first non-orthologous sequence - P.chabaudi:418 P.jiroveci:418

Q4XWY4              	100.00%		L0PFF6              	100.00%
Bootstrap support for Q4XWY4 as seed ortholog is 100%.
Bootstrap support for L0PFF6 as seed ortholog is 100%.

Group of orthologs #56. Best score 418 bits
Score difference with first non-orthologous sequence - P.chabaudi:418 P.jiroveci:418

Q4Y1Q4              	100.00%		L0PCP1              	100.00%
Bootstrap support for Q4Y1Q4 as seed ortholog is 100%.
Bootstrap support for L0PCP1 as seed ortholog is 100%.

Group of orthologs #57. Best score 417 bits
Score difference with first non-orthologous sequence - P.chabaudi:417 P.jiroveci:417

Q4XP95              	100.00%		L0P7P1              	100.00%
Bootstrap support for Q4XP95 as seed ortholog is 100%.
Bootstrap support for L0P7P1 as seed ortholog is 100%.

Group of orthologs #58. Best score 415 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.jiroveci:250

Q4Y3X7              	100.00%		L0PDY0              	100.00%
Bootstrap support for Q4Y3X7 as seed ortholog is 99%.
Bootstrap support for L0PDY0 as seed ortholog is 100%.

Group of orthologs #59. Best score 411 bits
Score difference with first non-orthologous sequence - P.chabaudi:411 P.jiroveci:411

Q4XY88              	100.00%		L0PD55              	100.00%
Bootstrap support for Q4XY88 as seed ortholog is 100%.
Bootstrap support for L0PD55 as seed ortholog is 100%.

Group of orthologs #60. Best score 410 bits
Score difference with first non-orthologous sequence - P.chabaudi:410 P.jiroveci:410

Q4XZ84              	100.00%		L0PAN4              	100.00%
Bootstrap support for Q4XZ84 as seed ortholog is 100%.
Bootstrap support for L0PAN4 as seed ortholog is 100%.

Group of orthologs #61. Best score 409 bits
Score difference with first non-orthologous sequence - P.chabaudi:409 P.jiroveci:409

Q4Y3G9              	100.00%		L0PFQ5              	100.00%
Bootstrap support for Q4Y3G9 as seed ortholog is 100%.
Bootstrap support for L0PFQ5 as seed ortholog is 100%.

Group of orthologs #62. Best score 405 bits
Score difference with first non-orthologous sequence - P.chabaudi:405 P.jiroveci:405

Q4Y209              	100.00%		L0P773              	100.00%
Bootstrap support for Q4Y209 as seed ortholog is 100%.
Bootstrap support for L0P773 as seed ortholog is 100%.

Group of orthologs #63. Best score 402 bits
Score difference with first non-orthologous sequence - P.chabaudi:83 P.jiroveci:24

Q4X3K2              	100.00%		L0PA91              	100.00%
Bootstrap support for Q4X3K2 as seed ortholog is 99%.
Bootstrap support for L0PA91 as seed ortholog is 76%.

Group of orthologs #64. Best score 397 bits
Score difference with first non-orthologous sequence - P.chabaudi:397 P.jiroveci:397

Q4XSW9              	100.00%		L0PER3              	100.00%
Bootstrap support for Q4XSW9 as seed ortholog is 100%.
Bootstrap support for L0PER3 as seed ortholog is 100%.

Group of orthologs #65. Best score 396 bits
Score difference with first non-orthologous sequence - P.chabaudi:396 P.jiroveci:396

Q4XUF3              	100.00%		L0PBW7              	100.00%
Bootstrap support for Q4XUF3 as seed ortholog is 100%.
Bootstrap support for L0PBW7 as seed ortholog is 100%.

Group of orthologs #66. Best score 394 bits
Score difference with first non-orthologous sequence - P.chabaudi:394 P.jiroveci:394

Q4Y174              	100.00%		L0PHB7              	100.00%
Bootstrap support for Q4Y174 as seed ortholog is 100%.
Bootstrap support for L0PHB7 as seed ortholog is 100%.

Group of orthologs #67. Best score 391 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.jiroveci:65

Q4XEG0              	100.00%		L0PFS3              	100.00%
Bootstrap support for Q4XEG0 as seed ortholog is 99%.
Bootstrap support for L0PFS3 as seed ortholog is 98%.

Group of orthologs #68. Best score 388 bits
Score difference with first non-orthologous sequence - P.chabaudi:316 P.jiroveci:271

Q4X2G0              	100.00%		L0P7M4              	100.00%
                    	       		L0PH62              	54.17%
Bootstrap support for Q4X2G0 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #69. Best score 377 bits
Score difference with first non-orthologous sequence - P.chabaudi:377 P.jiroveci:377

Q4Y881              	100.00%		L0PFU4              	100.00%
Bootstrap support for Q4Y881 as seed ortholog is 100%.
Bootstrap support for L0PFU4 as seed ortholog is 100%.

Group of orthologs #70. Best score 373 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.jiroveci:116

Q4Y3A0              	100.00%		L0PDH7              	100.00%
Bootstrap support for Q4Y3A0 as seed ortholog is 100%.
Bootstrap support for L0PDH7 as seed ortholog is 99%.

Group of orthologs #71. Best score 369 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.jiroveci:178

Q4X5U3              	100.00%		L0P7L0              	100.00%
                    	       		L0PCI7              	100.00%
Bootstrap support for Q4X5U3 as seed ortholog is 99%.
Bootstrap support for L0P7L0 as seed ortholog is 100%.
Bootstrap support for L0PCI7 as seed ortholog is 100%.

Group of orthologs #72. Best score 368 bits
Score difference with first non-orthologous sequence - P.chabaudi:368 P.jiroveci:92

Q4XEG1              	100.00%		L0PCW9              	100.00%
Bootstrap support for Q4XEG1 as seed ortholog is 100%.
Bootstrap support for L0PCW9 as seed ortholog is 99%.

Group of orthologs #73. Best score 368 bits
Score difference with first non-orthologous sequence - P.chabaudi:368 P.jiroveci:368

Q4XT07              	100.00%		L0PDU2              	100.00%
Bootstrap support for Q4XT07 as seed ortholog is 100%.
Bootstrap support for L0PDU2 as seed ortholog is 100%.

Group of orthologs #74. Best score 368 bits
Score difference with first non-orthologous sequence - P.chabaudi:368 P.jiroveci:368

Q4Y1K2              	100.00%		L0PC44              	100.00%
Bootstrap support for Q4Y1K2 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #75. Best score 367 bits
Score difference with first non-orthologous sequence - P.chabaudi:367 P.jiroveci:367

Q4Y1I7              	100.00%		L0P6Y2              	100.00%
Q4XEY5              	16.15%		
Bootstrap support for Q4Y1I7 as seed ortholog is 100%.
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #76. Best score 367 bits
Score difference with first non-orthologous sequence - P.chabaudi:367 P.jiroveci:367

Q4XXD2              	100.00%		L0P6R7              	100.00%
Bootstrap support for Q4XXD2 as seed ortholog is 100%.
Bootstrap support for L0P6R7 as seed ortholog is 100%.

Group of orthologs #77. Best score 367 bits
Score difference with first non-orthologous sequence - P.chabaudi:243 P.jiroveci:236

Q4Y5C0              	100.00%		L0P7R1              	100.00%
Bootstrap support for Q4Y5C0 as seed ortholog is 100%.
Bootstrap support for L0P7R1 as seed ortholog is 100%.

Group of orthologs #78. Best score 362 bits
Score difference with first non-orthologous sequence - P.chabaudi:362 P.jiroveci:362

Q4XLW3              	100.00%		L0P9P7              	100.00%
Bootstrap support for Q4XLW3 as seed ortholog is 100%.
Bootstrap support for L0P9P7 as seed ortholog is 100%.

Group of orthologs #79. Best score 358 bits
Score difference with first non-orthologous sequence - P.chabaudi:148 P.jiroveci:358

Q4XWX7              	100.00%		L0PGU1              	100.00%
Q4Y080              	10.19%		L0PH47              	6.72%
Bootstrap support for Q4XWX7 as seed ortholog is 99%.
Bootstrap support for L0PGU1 as seed ortholog is 100%.

Group of orthologs #80. Best score 358 bits
Score difference with first non-orthologous sequence - P.chabaudi:358 P.jiroveci:358

Q4X3L7              	100.00%		L0PFQ2              	100.00%
                    	       		L0PGR4              	94.32%
Bootstrap support for Q4X3L7 as seed ortholog is 100%.
Bootstrap support for L0PFQ2 as seed ortholog is 100%.

Group of orthologs #81. Best score 356 bits
Score difference with first non-orthologous sequence - P.chabaudi:356 P.jiroveci:356

Q4X574              	100.00%		L0PDM0              	100.00%
Bootstrap support for Q4X574 as seed ortholog is 100%.
Bootstrap support for L0PDM0 as seed ortholog is 100%.

Group of orthologs #82. Best score 355 bits
Score difference with first non-orthologous sequence - P.chabaudi:177 P.jiroveci:48

Q4Y4B1              	100.00%		L0PAY3              	100.00%
Bootstrap support for Q4Y4B1 as seed ortholog is 99%.
Bootstrap support for L0PAY3 as seed ortholog is 93%.

Group of orthologs #83. Best score 354 bits
Score difference with first non-orthologous sequence - P.chabaudi:354 P.jiroveci:354

Q4XM14              	100.00%		L0PB60              	100.00%
Bootstrap support for Q4XM14 as seed ortholog is 100%.
Bootstrap support for L0PB60 as seed ortholog is 100%.

Group of orthologs #84. Best score 354 bits
Score difference with first non-orthologous sequence - P.chabaudi:354 P.jiroveci:245

Q4XME4              	100.00%		L0PDG3              	100.00%
Bootstrap support for Q4XME4 as seed ortholog is 100%.
Bootstrap support for L0PDG3 as seed ortholog is 99%.

Group of orthologs #85. Best score 353 bits
Score difference with first non-orthologous sequence - P.chabaudi:32 P.jiroveci:56

Q4Y1N6              	100.00%		L0P7D9              	100.00%
                    	       		L0PFW2              	8.75%
Bootstrap support for Q4Y1N6 as seed ortholog is 81%.
Bootstrap support for L0P7D9 as seed ortholog is 93%.

Group of orthologs #86. Best score 352 bits
Score difference with first non-orthologous sequence - P.chabaudi:190 P.jiroveci:145

Q4Y248              	100.00%		L0PF08              	100.00%
Bootstrap support for Q4Y248 as seed ortholog is 99%.
Bootstrap support for L0PF08 as seed ortholog is 99%.

Group of orthologs #87. Best score 352 bits
Score difference with first non-orthologous sequence - P.chabaudi:352 P.jiroveci:352

Q4Y556              	100.00%		L0PCX1              	100.00%
Bootstrap support for Q4Y556 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #88. Best score 350 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.jiroveci:95

Q4XST8              	100.00%		L0P7A7              	100.00%
Bootstrap support for Q4XST8 as seed ortholog is 99%.
Bootstrap support for L0P7A7 as seed ortholog is 99%.

Group of orthologs #89. Best score 349 bits
Score difference with first non-orthologous sequence - P.chabaudi:349 P.jiroveci:349

Q4Y728              	100.00%		L0P833              	100.00%
                    	       		L0P765              	39.30%
Bootstrap support for Q4Y728 as seed ortholog is 100%.
Bootstrap support for L0P833 as seed ortholog is 100%.

Group of orthologs #90. Best score 348 bits
Score difference with first non-orthologous sequence - P.chabaudi:348 P.jiroveci:348

Q4XZC7              	100.00%		L0PCB2              	100.00%
Bootstrap support for Q4XZC7 as seed ortholog is 100%.
Bootstrap support for L0PCB2 as seed ortholog is 100%.

Group of orthologs #91. Best score 346 bits
Score difference with first non-orthologous sequence - P.chabaudi:346 P.jiroveci:208

Q4Y0L7              	100.00%		L0PCS3              	100.00%
Bootstrap support for Q4Y0L7 as seed ortholog is 100%.
Bootstrap support for L0PCS3 as seed ortholog is 100%.

Group of orthologs #92. Best score 345 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.jiroveci:206

Q4Y443              	100.00%		L0P945              	100.00%
Q4XHL7              	14.10%		
Bootstrap support for Q4Y443 as seed ortholog is 100%.
Bootstrap support for L0P945 as seed ortholog is 100%.

Group of orthologs #93. Best score 344 bits
Score difference with first non-orthologous sequence - P.chabaudi:196 P.jiroveci:183

Q4Y1F9              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	49.24%
Bootstrap support for Q4Y1F9 as seed ortholog is 100%.
Bootstrap support for L0PC17 as seed ortholog is 99%.

Group of orthologs #94. Best score 344 bits
Score difference with first non-orthologous sequence - P.chabaudi:228 P.jiroveci:344

Q4XYU6              	100.00%		L0PEE3              	100.00%
Bootstrap support for Q4XYU6 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #95. Best score 342 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.jiroveci:342

Q4Y4Z2              	100.00%		L0P7Y5              	100.00%
Bootstrap support for Q4Y4Z2 as seed ortholog is 99%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #96. Best score 341 bits
Score difference with first non-orthologous sequence - P.chabaudi:341 P.jiroveci:341

Q4X2E2              	100.00%		L0PB35              	100.00%
Bootstrap support for Q4X2E2 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 100%.

Group of orthologs #97. Best score 338 bits
Score difference with first non-orthologous sequence - P.chabaudi:338 P.jiroveci:338

Q4XRV0              	100.00%		L0PAP2              	100.00%
Bootstrap support for Q4XRV0 as seed ortholog is 100%.
Bootstrap support for L0PAP2 as seed ortholog is 100%.

Group of orthologs #98. Best score 338 bits
Score difference with first non-orthologous sequence - P.chabaudi:338 P.jiroveci:338

Q4XQ91              	100.00%		L0PDI6              	100.00%
Bootstrap support for Q4XQ91 as seed ortholog is 100%.
Bootstrap support for L0PDI6 as seed ortholog is 100%.

Group of orthologs #99. Best score 332 bits
Score difference with first non-orthologous sequence - P.chabaudi:332 P.jiroveci:332

Q4Y6J7              	100.00%		L0PF49              	100.00%
Bootstrap support for Q4Y6J7 as seed ortholog is 100%.
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #100. Best score 329 bits
Score difference with first non-orthologous sequence - P.chabaudi:329 P.jiroveci:240

Q4Y7N7              	100.00%		L0PA41              	100.00%
Bootstrap support for Q4Y7N7 as seed ortholog is 100%.
Bootstrap support for L0PA41 as seed ortholog is 99%.

Group of orthologs #101. Best score 325 bits
Score difference with first non-orthologous sequence - P.chabaudi:325 P.jiroveci:325

Q4XLD5              	100.00%		L0P9U3              	100.00%
Bootstrap support for Q4XLD5 as seed ortholog is 100%.
Bootstrap support for L0P9U3 as seed ortholog is 100%.

Group of orthologs #102. Best score 325 bits
Score difference with first non-orthologous sequence - P.chabaudi:239 P.jiroveci:43

Q4Y4R9              	100.00%		L0P718              	100.00%
Bootstrap support for Q4Y4R9 as seed ortholog is 100%.
Bootstrap support for L0P718 as seed ortholog is 96%.

Group of orthologs #103. Best score 325 bits
Score difference with first non-orthologous sequence - P.chabaudi:325 P.jiroveci:325

Q4Y907              	100.00%		L0PFQ8              	100.00%
Bootstrap support for Q4Y907 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #104. Best score 317 bits
Score difference with first non-orthologous sequence - P.chabaudi:317 P.jiroveci:317

Q4XMT5              	100.00%		L0PFI2              	100.00%
Bootstrap support for Q4XMT5 as seed ortholog is 100%.
Bootstrap support for L0PFI2 as seed ortholog is 100%.

Group of orthologs #105. Best score 314 bits
Score difference with first non-orthologous sequence - P.chabaudi:314 P.jiroveci:314

Q4XGH0              	100.00%		L0PCR5              	100.00%
                    	       		L0P9C2              	60.19%
Bootstrap support for Q4XGH0 as seed ortholog is 100%.
Bootstrap support for L0PCR5 as seed ortholog is 100%.

Group of orthologs #106. Best score 314 bits
Score difference with first non-orthologous sequence - P.chabaudi:314 P.jiroveci:314

Q4XZX2              	100.00%		L0PBD7              	100.00%
Bootstrap support for Q4XZX2 as seed ortholog is 100%.
Bootstrap support for L0PBD7 as seed ortholog is 100%.

Group of orthologs #107. Best score 314 bits
Score difference with first non-orthologous sequence - P.chabaudi:314 P.jiroveci:314

Q4Y5L1              	100.00%		L0PGL8              	100.00%
Bootstrap support for Q4Y5L1 as seed ortholog is 100%.
Bootstrap support for L0PGL8 as seed ortholog is 100%.

Group of orthologs #108. Best score 311 bits
Score difference with first non-orthologous sequence - P.chabaudi:311 P.jiroveci:311

Q4X2S8              	100.00%		L0PFY1              	100.00%
Bootstrap support for Q4X2S8 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #109. Best score 311 bits
Score difference with first non-orthologous sequence - P.chabaudi:311 P.jiroveci:242

Q4XY67              	100.00%		L0PAL8              	100.00%
Bootstrap support for Q4XY67 as seed ortholog is 100%.
Bootstrap support for L0PAL8 as seed ortholog is 100%.

Group of orthologs #110. Best score 309 bits
Score difference with first non-orthologous sequence - P.chabaudi:265 P.jiroveci:255

Q4XMS7              	100.00%		L0PBU6              	100.00%
Bootstrap support for Q4XMS7 as seed ortholog is 100%.
Bootstrap support for L0PBU6 as seed ortholog is 100%.

Group of orthologs #111. Best score 308 bits
Score difference with first non-orthologous sequence - P.chabaudi:308 P.jiroveci:165

Q4XWY1              	100.00%		L0PAU1              	100.00%
Bootstrap support for Q4XWY1 as seed ortholog is 100%.
Bootstrap support for L0PAU1 as seed ortholog is 99%.

Group of orthologs #112. Best score 305 bits
Score difference with first non-orthologous sequence - P.chabaudi:305 P.jiroveci:305

Q4XXU4              	100.00%		L0P6X8              	100.00%
Bootstrap support for Q4XXU4 as seed ortholog is 100%.
Bootstrap support for L0P6X8 as seed ortholog is 100%.

Group of orthologs #113. Best score 305 bits
Score difference with first non-orthologous sequence - P.chabaudi:28 P.jiroveci:130

Q4XSI9              	100.00%		L0PEM1              	100.00%
Bootstrap support for Q4XSI9 as seed ortholog is 73%.
Alternative seed ortholog is Q4XYI1 (28 bits away from this cluster)
Bootstrap support for L0PEM1 as seed ortholog is 99%.

Group of orthologs #114. Best score 303 bits
Score difference with first non-orthologous sequence - P.chabaudi:101 P.jiroveci:303

Q4XX92              	100.00%		L0PE19              	100.00%
Bootstrap support for Q4XX92 as seed ortholog is 99%.
Bootstrap support for L0PE19 as seed ortholog is 100%.

Group of orthologs #115. Best score 301 bits
Score difference with first non-orthologous sequence - P.chabaudi:195 P.jiroveci:181

Q4XVK7              	100.00%		L0PB21              	100.00%
Bootstrap support for Q4XVK7 as seed ortholog is 100%.
Bootstrap support for L0PB21 as seed ortholog is 100%.

Group of orthologs #116. Best score 300 bits
Score difference with first non-orthologous sequence - P.chabaudi:247 P.jiroveci:47

Q4Y8F5              	100.00%		L0PGT9              	100.00%
Bootstrap support for Q4Y8F5 as seed ortholog is 100%.
Bootstrap support for L0PGT9 as seed ortholog is 88%.

Group of orthologs #117. Best score 295 bits
Score difference with first non-orthologous sequence - P.chabaudi:295 P.jiroveci:295

Q4XVS9              	100.00%		L0PBJ8              	100.00%
Bootstrap support for Q4XVS9 as seed ortholog is 100%.
Bootstrap support for L0PBJ8 as seed ortholog is 100%.

Group of orthologs #118. Best score 295 bits
Score difference with first non-orthologous sequence - P.chabaudi:295 P.jiroveci:295

Q4XXZ2              	100.00%		L0PA65              	100.00%
Bootstrap support for Q4XXZ2 as seed ortholog is 100%.
Bootstrap support for L0PA65 as seed ortholog is 100%.

Group of orthologs #119. Best score 294 bits
Score difference with first non-orthologous sequence - P.chabaudi:294 P.jiroveci:294

Q4XLQ4              	100.00%		L0PD02              	100.00%
Bootstrap support for Q4XLQ4 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 100%.

Group of orthologs #120. Best score 291 bits
Score difference with first non-orthologous sequence - P.chabaudi:198 P.jiroveci:291

Q4XKZ8              	100.00%		L0PAL3              	100.00%
Bootstrap support for Q4XKZ8 as seed ortholog is 99%.
Bootstrap support for L0PAL3 as seed ortholog is 100%.

Group of orthologs #121. Best score 289 bits
Score difference with first non-orthologous sequence - P.chabaudi:289 P.jiroveci:289

Q4X7J0              	100.00%		L0P8P8              	100.00%
Bootstrap support for Q4X7J0 as seed ortholog is 100%.
Bootstrap support for L0P8P8 as seed ortholog is 100%.

Group of orthologs #122. Best score 289 bits
Score difference with first non-orthologous sequence - P.chabaudi:289 P.jiroveci:289

Q4XXD5              	100.00%		L0PET9              	100.00%
Bootstrap support for Q4XXD5 as seed ortholog is 100%.
Bootstrap support for L0PET9 as seed ortholog is 100%.

Group of orthologs #123. Best score 289 bits
Score difference with first non-orthologous sequence - P.chabaudi:289 P.jiroveci:210

Q4Y2P2              	100.00%		L0PBY2              	100.00%
Bootstrap support for Q4Y2P2 as seed ortholog is 100%.
Bootstrap support for L0PBY2 as seed ortholog is 99%.

Group of orthologs #124. Best score 287 bits
Score difference with first non-orthologous sequence - P.chabaudi:287 P.jiroveci:287

Q4Y7H8              	100.00%		L0PAG0              	100.00%
Bootstrap support for Q4Y7H8 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #125. Best score 285 bits
Score difference with first non-orthologous sequence - P.chabaudi:201 P.jiroveci:170

Q4Y570              	100.00%		L0P9F6              	100.00%
Bootstrap support for Q4Y570 as seed ortholog is 100%.
Bootstrap support for L0P9F6 as seed ortholog is 100%.

Group of orthologs #126. Best score 284 bits
Score difference with first non-orthologous sequence - P.chabaudi:284 P.jiroveci:86

Q4XNV1              	100.00%		L0P9H5              	100.00%
                    	       		L0P8S4              	57.50%
Bootstrap support for Q4XNV1 as seed ortholog is 100%.
Bootstrap support for L0P9H5 as seed ortholog is 99%.

Group of orthologs #127. Best score 284 bits
Score difference with first non-orthologous sequence - P.chabaudi:284 P.jiroveci:284

Q4Y814              	100.00%		L0PB12              	100.00%
Bootstrap support for Q4Y814 as seed ortholog is 100%.
Bootstrap support for L0PB12 as seed ortholog is 100%.

Group of orthologs #128. Best score 282 bits
Score difference with first non-orthologous sequence - P.chabaudi:201 P.jiroveci:215

Q4Y1U9              	100.00%		L0PEF5              	100.00%
Bootstrap support for Q4Y1U9 as seed ortholog is 100%.
Bootstrap support for L0PEF5 as seed ortholog is 100%.

Group of orthologs #129. Best score 282 bits
Score difference with first non-orthologous sequence - P.chabaudi:208 P.jiroveci:223

Q4Y5T8              	100.00%		L0PD17              	100.00%
Bootstrap support for Q4Y5T8 as seed ortholog is 100%.
Bootstrap support for L0PD17 as seed ortholog is 100%.

Group of orthologs #130. Best score 281 bits
Score difference with first non-orthologous sequence - P.chabaudi:281 P.jiroveci:170

Q4XPF6              	100.00%		L0PEZ3              	100.00%
Bootstrap support for Q4XPF6 as seed ortholog is 100%.
Bootstrap support for L0PEZ3 as seed ortholog is 99%.

Group of orthologs #131. Best score 281 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.jiroveci:211

Q4XZR3              	100.00%		L0PA88              	100.00%
Bootstrap support for Q4XZR3 as seed ortholog is 99%.
Bootstrap support for L0PA88 as seed ortholog is 100%.

Group of orthologs #132. Best score 280 bits
Score difference with first non-orthologous sequence - P.chabaudi:280 P.jiroveci:280

Q4XLN7              	100.00%		L0P921              	100.00%
Bootstrap support for Q4XLN7 as seed ortholog is 100%.
Bootstrap support for L0P921 as seed ortholog is 100%.

Group of orthologs #133. Best score 280 bits
Score difference with first non-orthologous sequence - P.chabaudi:184 P.jiroveci:222

Q4XMU5              	100.00%		L0PI36              	100.00%
Bootstrap support for Q4XMU5 as seed ortholog is 99%.
Bootstrap support for L0PI36 as seed ortholog is 100%.

Group of orthologs #134. Best score 280 bits
Score difference with first non-orthologous sequence - P.chabaudi:280 P.jiroveci:34

Q4Y2P6              	100.00%		L0PD03              	100.00%
Bootstrap support for Q4Y2P6 as seed ortholog is 100%.
Bootstrap support for L0PD03 as seed ortholog is 86%.

Group of orthologs #135. Best score 279 bits
Score difference with first non-orthologous sequence - P.chabaudi:125 P.jiroveci:279

Q4Y4Z5              	100.00%		L0PC37              	100.00%
Bootstrap support for Q4Y4Z5 as seed ortholog is 99%.
Bootstrap support for L0PC37 as seed ortholog is 100%.

Group of orthologs #136. Best score 277 bits
Score difference with first non-orthologous sequence - P.chabaudi:277 P.jiroveci:117

Q4Y754              	100.00%		L0PCJ5              	100.00%
Q4XIX2              	29.52%		
Bootstrap support for Q4Y754 as seed ortholog is 100%.
Bootstrap support for L0PCJ5 as seed ortholog is 99%.

Group of orthologs #137. Best score 275 bits
Score difference with first non-orthologous sequence - P.chabaudi:275 P.jiroveci:152

Q4XXP8              	100.00%		L0PA00              	100.00%
Bootstrap support for Q4XXP8 as seed ortholog is 100%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #138. Best score 275 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.jiroveci:211

Q4XXT5              	100.00%		L0PDG5              	100.00%
Bootstrap support for Q4XXT5 as seed ortholog is 100%.
Bootstrap support for L0PDG5 as seed ortholog is 100%.

Group of orthologs #139. Best score 272 bits
Score difference with first non-orthologous sequence - P.chabaudi:140 P.jiroveci:74

Q4Y965              	100.00%		L0PGJ9              	100.00%
Bootstrap support for Q4Y965 as seed ortholog is 99%.
Bootstrap support for L0PGJ9 as seed ortholog is 95%.

Group of orthologs #140. Best score 270 bits
Score difference with first non-orthologous sequence - P.chabaudi:270 P.jiroveci:270

Q4Y3X5              	100.00%		L0PFI8              	100.00%
Bootstrap support for Q4Y3X5 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #141. Best score 269 bits
Score difference with first non-orthologous sequence - P.chabaudi:269 P.jiroveci:269

Q4XE90              	100.00%		L0P9X4              	100.00%
Bootstrap support for Q4XE90 as seed ortholog is 100%.
Bootstrap support for L0P9X4 as seed ortholog is 100%.

Group of orthologs #142. Best score 269 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.jiroveci:106

Q4XVZ3              	100.00%		L0P8N1              	100.00%
Bootstrap support for Q4XVZ3 as seed ortholog is 99%.
Bootstrap support for L0P8N1 as seed ortholog is 99%.

Group of orthologs #143. Best score 268 bits
Score difference with first non-orthologous sequence - P.chabaudi:268 P.jiroveci:268

Q4Y162              	100.00%		L0PA42              	100.00%
Bootstrap support for Q4Y162 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #144. Best score 268 bits
Score difference with first non-orthologous sequence - P.chabaudi:268 P.jiroveci:268

Q4Y5W4              	100.00%		L0PG77              	100.00%
Bootstrap support for Q4Y5W4 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #145. Best score 265 bits
Score difference with first non-orthologous sequence - P.chabaudi:265 P.jiroveci:265

Q4XVN2              	100.00%		L0PFI9              	100.00%
Bootstrap support for Q4XVN2 as seed ortholog is 100%.
Bootstrap support for L0PFI9 as seed ortholog is 100%.

Group of orthologs #146. Best score 264 bits
Score difference with first non-orthologous sequence - P.chabaudi:264 P.jiroveci:264

Q4Y2L7              	100.00%		L0PB50              	100.00%
Q4X916              	49.47%		
Bootstrap support for Q4Y2L7 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #147. Best score 263 bits
Score difference with first non-orthologous sequence - P.chabaudi:263 P.jiroveci:263

Q4XXX5              	100.00%		L0P9R9              	100.00%
Bootstrap support for Q4XXX5 as seed ortholog is 100%.
Bootstrap support for L0P9R9 as seed ortholog is 100%.

Group of orthologs #148. Best score 262 bits
Score difference with first non-orthologous sequence - P.chabaudi:262 P.jiroveci:262

Q4X6C9              	100.00%		L0PFY3              	100.00%
Q4XXB4              	99.57%		
Bootstrap support for Q4X6C9 as seed ortholog is 100%.
Bootstrap support for L0PFY3 as seed ortholog is 100%.

Group of orthologs #149. Best score 261 bits
Score difference with first non-orthologous sequence - P.chabaudi:261 P.jiroveci:100

Q4XTV5              	100.00%		L0PC30              	100.00%
Bootstrap support for Q4XTV5 as seed ortholog is 100%.
Bootstrap support for L0PC30 as seed ortholog is 99%.

Group of orthologs #150. Best score 261 bits
Score difference with first non-orthologous sequence - P.chabaudi:261 P.jiroveci:261

Q4XYI6              	100.00%		L0P8M6              	100.00%
Bootstrap support for Q4XYI6 as seed ortholog is 100%.
Bootstrap support for L0P8M6 as seed ortholog is 100%.

Group of orthologs #151. Best score 261 bits
Score difference with first non-orthologous sequence - P.chabaudi:108 P.jiroveci:197

Q4Y8M5              	100.00%		L0PGR0              	100.00%
Bootstrap support for Q4Y8M5 as seed ortholog is 98%.
Bootstrap support for L0PGR0 as seed ortholog is 99%.

Group of orthologs #152. Best score 260 bits
Score difference with first non-orthologous sequence - P.chabaudi:260 P.jiroveci:260

Q4XLX9              	100.00%		L0PAJ2              	100.00%
Bootstrap support for Q4XLX9 as seed ortholog is 100%.
Bootstrap support for L0PAJ2 as seed ortholog is 100%.

Group of orthologs #153. Best score 260 bits
Score difference with first non-orthologous sequence - P.chabaudi:260 P.jiroveci:260

Q4XPR3              	100.00%		L0PCG4              	100.00%
Bootstrap support for Q4XPR3 as seed ortholog is 100%.
Bootstrap support for L0PCG4 as seed ortholog is 100%.

Group of orthologs #154. Best score 260 bits
Score difference with first non-orthologous sequence - P.chabaudi:260 P.jiroveci:62

Q4Y6J3              	100.00%		L0PC99              	100.00%
Bootstrap support for Q4Y6J3 as seed ortholog is 100%.
Bootstrap support for L0PC99 as seed ortholog is 96%.

Group of orthologs #155. Best score 259 bits
Score difference with first non-orthologous sequence - P.chabaudi:259 P.jiroveci:178

Q4Y3B8              	100.00%		L0PBY3              	100.00%
Bootstrap support for Q4Y3B8 as seed ortholog is 100%.
Bootstrap support for L0PBY3 as seed ortholog is 99%.

Group of orthologs #156. Best score 257 bits
Score difference with first non-orthologous sequence - P.chabaudi:44 P.jiroveci:257

Q4XQ45              	100.00%		L0P891              	100.00%
Q4X8G9              	39.29%		
Bootstrap support for Q4XQ45 as seed ortholog is 88%.
Bootstrap support for L0P891 as seed ortholog is 100%.

Group of orthologs #157. Best score 257 bits
Score difference with first non-orthologous sequence - P.chabaudi:257 P.jiroveci:257

Q4XVI2              	100.00%		L0PHL5              	100.00%
Q4X9S6              	42.35%		
Bootstrap support for Q4XVI2 as seed ortholog is 100%.
Bootstrap support for L0PHL5 as seed ortholog is 100%.

Group of orthologs #158. Best score 255 bits
Score difference with first non-orthologous sequence - P.chabaudi:255 P.jiroveci:255

Q4XM73              	100.00%		L0PC62              	100.00%
Bootstrap support for Q4XM73 as seed ortholog is 100%.
Bootstrap support for L0PC62 as seed ortholog is 100%.

Group of orthologs #159. Best score 254 bits
Score difference with first non-orthologous sequence - P.chabaudi:254 P.jiroveci:254

Q4XDW8              	100.00%		L0P917              	100.00%
                    	       		L0PF20              	90.07%
Bootstrap support for Q4XDW8 as seed ortholog is 100%.
Bootstrap support for L0P917 as seed ortholog is 100%.

Group of orthologs #160. Best score 253 bits
Score difference with first non-orthologous sequence - P.chabaudi:253 P.jiroveci:253

Q4XVZ7              	100.00%		L0P8G8              	100.00%
Bootstrap support for Q4XVZ7 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #161. Best score 251 bits
Score difference with first non-orthologous sequence - P.chabaudi:251 P.jiroveci:251

Q4Y225              	100.00%		L0PF68              	100.00%
Bootstrap support for Q4Y225 as seed ortholog is 100%.
Bootstrap support for L0PF68 as seed ortholog is 100%.

Group of orthologs #162. Best score 250 bits
Score difference with first non-orthologous sequence - P.chabaudi:250 P.jiroveci:250

Q4X751              	100.00%		L0PBA8              	100.00%
Bootstrap support for Q4X751 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #163. Best score 248 bits
Score difference with first non-orthologous sequence - P.chabaudi:248 P.jiroveci:98

Q4XYW9              	100.00%		L0PCD8              	100.00%
Bootstrap support for Q4XYW9 as seed ortholog is 100%.
Bootstrap support for L0PCD8 as seed ortholog is 93%.

Group of orthologs #164. Best score 247 bits
Score difference with first non-orthologous sequence - P.chabaudi:247 P.jiroveci:247

Q4XZE5              	100.00%		L0PC90              	100.00%
Bootstrap support for Q4XZE5 as seed ortholog is 100%.
Bootstrap support for L0PC90 as seed ortholog is 100%.

Group of orthologs #165. Best score 245 bits
Score difference with first non-orthologous sequence - P.chabaudi:245 P.jiroveci:245

Q4Y133              	100.00%		L0PE41              	100.00%
Bootstrap support for Q4Y133 as seed ortholog is 100%.
Bootstrap support for L0PE41 as seed ortholog is 100%.

Group of orthologs #166. Best score 244 bits
Score difference with first non-orthologous sequence - P.chabaudi:29 P.jiroveci:64

Q4XPW9              	100.00%		L0PA26              	100.00%
Bootstrap support for Q4XPW9 as seed ortholog is 91%.
Bootstrap support for L0PA26 as seed ortholog is 99%.

Group of orthologs #167. Best score 243 bits
Score difference with first non-orthologous sequence - P.chabaudi:243 P.jiroveci:243

Q4Y6P6              	100.00%		L0P8W6              	100.00%
Bootstrap support for Q4Y6P6 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #168. Best score 242 bits
Score difference with first non-orthologous sequence - P.chabaudi:242 P.jiroveci:2

Q4XYW5              	100.00%		L0PA63              	100.00%
Bootstrap support for Q4XYW5 as seed ortholog is 100%.
Bootstrap support for L0PA63 as seed ortholog is 57%.
Alternative seed ortholog is L0PIP5 (2 bits away from this cluster)

Group of orthologs #169. Best score 241 bits
Score difference with first non-orthologous sequence - P.chabaudi:241 P.jiroveci:241

Q4X290              	100.00%		L0PAM2              	100.00%
Bootstrap support for Q4X290 as seed ortholog is 100%.
Bootstrap support for L0PAM2 as seed ortholog is 100%.

Group of orthologs #170. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.jiroveci:240

Q4XL93              	100.00%		L0P9S5              	100.00%
Bootstrap support for Q4XL93 as seed ortholog is 100%.
Bootstrap support for L0P9S5 as seed ortholog is 100%.

Group of orthologs #171. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.jiroveci:240

Q4XZM4              	100.00%		L0PFC2              	100.00%
Bootstrap support for Q4XZM4 as seed ortholog is 100%.
Bootstrap support for L0PFC2 as seed ortholog is 100%.

Group of orthologs #172. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:181 P.jiroveci:240

Q4XYS3              	100.00%		L0PIR9              	100.00%
Bootstrap support for Q4XYS3 as seed ortholog is 99%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #173. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.jiroveci:240

Q4Y164              	100.00%		L0PF23              	100.00%
Bootstrap support for Q4Y164 as seed ortholog is 100%.
Bootstrap support for L0PF23 as seed ortholog is 100%.

Group of orthologs #174. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:187 P.jiroveci:240

Q4XZ86              	100.00%		L0PHJ3              	100.00%
Bootstrap support for Q4XZ86 as seed ortholog is 100%.
Bootstrap support for L0PHJ3 as seed ortholog is 100%.

Group of orthologs #175. Best score 240 bits
Score difference with first non-orthologous sequence - P.chabaudi:240 P.jiroveci:240

Q4Y5Y4              	100.00%		L0PI19              	100.00%
Bootstrap support for Q4Y5Y4 as seed ortholog is 100%.
Bootstrap support for L0PI19 as seed ortholog is 100%.

Group of orthologs #176. Best score 239 bits
Score difference with first non-orthologous sequence - P.chabaudi:239 P.jiroveci:239

Q4X4K9              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	75.27%
Bootstrap support for Q4X4K9 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #177. Best score 238 bits
Score difference with first non-orthologous sequence - P.chabaudi:238 P.jiroveci:238

Q4XMG8              	100.00%		L0PEV9              	100.00%
Bootstrap support for Q4XMG8 as seed ortholog is 100%.
Bootstrap support for L0PEV9 as seed ortholog is 100%.

Group of orthologs #178. Best score 237 bits
Score difference with first non-orthologous sequence - P.chabaudi:237 P.jiroveci:237

Q4XLF8              	100.00%		L0PBN1              	100.00%
Bootstrap support for Q4XLF8 as seed ortholog is 100%.
Bootstrap support for L0PBN1 as seed ortholog is 100%.

Group of orthologs #179. Best score 237 bits
Score difference with first non-orthologous sequence - P.chabaudi:237 P.jiroveci:237

Q4XTN8              	100.00%		L0PG82              	100.00%
Bootstrap support for Q4XTN8 as seed ortholog is 100%.
Bootstrap support for L0PG82 as seed ortholog is 100%.

Group of orthologs #180. Best score 236 bits
Score difference with first non-orthologous sequence - P.chabaudi:236 P.jiroveci:236

Q4XYL4              	100.00%		L0PHY6              	100.00%
Bootstrap support for Q4XYL4 as seed ortholog is 100%.
Bootstrap support for L0PHY6 as seed ortholog is 100%.

Group of orthologs #181. Best score 235 bits
Score difference with first non-orthologous sequence - P.chabaudi:21 P.jiroveci:70

Q4XR25              	100.00%		L0P9Z0              	100.00%
Bootstrap support for Q4XR25 as seed ortholog is 73%.
Alternative seed ortholog is Q4X2H2 (21 bits away from this cluster)
Bootstrap support for L0P9Z0 as seed ortholog is 98%.

Group of orthologs #182. Best score 233 bits
Score difference with first non-orthologous sequence - P.chabaudi:176 P.jiroveci:233

Q4Y7S8              	100.00%		L0PDV1              	100.00%
Bootstrap support for Q4Y7S8 as seed ortholog is 99%.
Bootstrap support for L0PDV1 as seed ortholog is 100%.

Group of orthologs #183. Best score 232 bits
Score difference with first non-orthologous sequence - P.chabaudi:135 P.jiroveci:115

Q4Y6R0              	100.00%		L0P876              	100.00%
Bootstrap support for Q4Y6R0 as seed ortholog is 100%.
Bootstrap support for L0P876 as seed ortholog is 100%.

Group of orthologs #184. Best score 231 bits
Score difference with first non-orthologous sequence - P.chabaudi:231 P.jiroveci:231

Q4Y666              	100.00%		L0P8X1              	100.00%
Bootstrap support for Q4Y666 as seed ortholog is 100%.
Bootstrap support for L0P8X1 as seed ortholog is 100%.

Group of orthologs #185. Best score 229 bits
Score difference with first non-orthologous sequence - P.chabaudi:229 P.jiroveci:229

Q4XY51              	100.00%		L0P9V7              	100.00%
                    	       		L0PAS3              	5.10%
Bootstrap support for Q4XY51 as seed ortholog is 100%.
Bootstrap support for L0P9V7 as seed ortholog is 100%.

Group of orthologs #186. Best score 229 bits
Score difference with first non-orthologous sequence - P.chabaudi:158 P.jiroveci:229

Q4XXX4              	100.00%		L0PFY2              	100.00%
Bootstrap support for Q4XXX4 as seed ortholog is 100%.
Bootstrap support for L0PFY2 as seed ortholog is 100%.

Group of orthologs #187. Best score 228 bits
Score difference with first non-orthologous sequence - P.chabaudi:110 P.jiroveci:85

Q4XTM5              	100.00%		L0PBI4              	100.00%
                    	       		L0P9A8              	14.75%
                    	       		L0PHB9              	14.75%
Bootstrap support for Q4XTM5 as seed ortholog is 99%.
Bootstrap support for L0PBI4 as seed ortholog is 99%.

Group of orthologs #188. Best score 228 bits
Score difference with first non-orthologous sequence - P.chabaudi:228 P.jiroveci:228

Q4XW80              	100.00%		L0PG33              	100.00%
Q4XF75              	59.18%		
Bootstrap support for Q4XW80 as seed ortholog is 100%.
Bootstrap support for L0PG33 as seed ortholog is 100%.

Group of orthologs #189. Best score 228 bits
Score difference with first non-orthologous sequence - P.chabaudi:228 P.jiroveci:228

Q4Y1Q7              	100.00%		L0PGV8              	100.00%
Bootstrap support for Q4Y1Q7 as seed ortholog is 100%.
Bootstrap support for L0PGV8 as seed ortholog is 100%.

Group of orthologs #190. Best score 228 bits
Score difference with first non-orthologous sequence - P.chabaudi:228 P.jiroveci:228

Q4Y8I1              	100.00%		L0PDF2              	100.00%
Bootstrap support for Q4Y8I1 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #191. Best score 227 bits
Score difference with first non-orthologous sequence - P.chabaudi:227 P.jiroveci:227

Q4XMK5              	100.00%		L0P7T0              	100.00%
Bootstrap support for Q4XMK5 as seed ortholog is 100%.
Bootstrap support for L0P7T0 as seed ortholog is 100%.

Group of orthologs #192. Best score 225 bits
Score difference with first non-orthologous sequence - P.chabaudi:178 P.jiroveci:97

Q4XQH7              	100.00%		L0PFS8              	100.00%
Bootstrap support for Q4XQH7 as seed ortholog is 100%.
Bootstrap support for L0PFS8 as seed ortholog is 99%.

Group of orthologs #193. Best score 221 bits
Score difference with first non-orthologous sequence - P.chabaudi:221 P.jiroveci:221

Q4XU74              	100.00%		L0P9G9              	100.00%
Bootstrap support for Q4XU74 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #194. Best score 221 bits
Score difference with first non-orthologous sequence - P.chabaudi:221 P.jiroveci:221

Q4XWF4              	100.00%		L0PHL1              	100.00%
Bootstrap support for Q4XWF4 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #195. Best score 220 bits
Score difference with first non-orthologous sequence - P.chabaudi:220 P.jiroveci:220

Q4XFK4              	100.00%		L0PF30              	100.00%
Q4XKZ4              	63.73%		
Bootstrap support for Q4XFK4 as seed ortholog is 100%.
Bootstrap support for L0PF30 as seed ortholog is 100%.

Group of orthologs #196. Best score 218 bits
Score difference with first non-orthologous sequence - P.chabaudi:218 P.jiroveci:218

Q4XWF3              	100.00%		L0PCG0              	100.00%
Bootstrap support for Q4XWF3 as seed ortholog is 100%.
Bootstrap support for L0PCG0 as seed ortholog is 100%.

Group of orthologs #197. Best score 217 bits
Score difference with first non-orthologous sequence - P.chabaudi:217 P.jiroveci:217

Q4XR67              	100.00%		L0P8V0              	100.00%
Bootstrap support for Q4XR67 as seed ortholog is 100%.
Bootstrap support for L0P8V0 as seed ortholog is 100%.

Group of orthologs #198. Best score 217 bits
Score difference with first non-orthologous sequence - P.chabaudi:217 P.jiroveci:217

Q4XZY3              	100.00%		L0PGI4              	100.00%
Bootstrap support for Q4XZY3 as seed ortholog is 100%.
Bootstrap support for L0PGI4 as seed ortholog is 100%.

Group of orthologs #199. Best score 216 bits
Score difference with first non-orthologous sequence - P.chabaudi:216 P.jiroveci:216

Q4XLB7              	100.00%		L0P9P0              	100.00%
Bootstrap support for Q4XLB7 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #200. Best score 216 bits
Score difference with first non-orthologous sequence - P.chabaudi:216 P.jiroveci:101

Q4XTW7              	100.00%		L0P8F5              	100.00%
Bootstrap support for Q4XTW7 as seed ortholog is 100%.
Bootstrap support for L0P8F5 as seed ortholog is 99%.

Group of orthologs #201. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:215 P.jiroveci:215

Q4XMS0              	100.00%		L0PBM9              	100.00%
Bootstrap support for Q4XMS0 as seed ortholog is 100%.
Bootstrap support for L0PBM9 as seed ortholog is 100%.

Group of orthologs #202. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:215 P.jiroveci:31

Q4XRU7              	100.00%		L0PBP2              	100.00%
Bootstrap support for Q4XRU7 as seed ortholog is 100%.
Bootstrap support for L0PBP2 as seed ortholog is 75%.

Group of orthologs #203. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:20 P.jiroveci:215

Q4Y3N5              	100.00%		L0P7Z6              	100.00%
Bootstrap support for Q4Y3N5 as seed ortholog is 67%.
Alternative seed ortholog is Q4Y018 (20 bits away from this cluster)
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #204. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:215 P.jiroveci:215

Q4XWC3              	100.00%		L0PGJ5              	100.00%
Bootstrap support for Q4XWC3 as seed ortholog is 100%.
Bootstrap support for L0PGJ5 as seed ortholog is 100%.

Group of orthologs #205. Best score 215 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.jiroveci:215

Q4Y626              	100.00%		L0PDW0              	100.00%
Bootstrap support for Q4Y626 as seed ortholog is 99%.
Bootstrap support for L0PDW0 as seed ortholog is 100%.

Group of orthologs #206. Best score 214 bits
Score difference with first non-orthologous sequence - P.chabaudi:214 P.jiroveci:214

Q4Y1D0              	100.00%		L0P8J2              	100.00%
Bootstrap support for Q4Y1D0 as seed ortholog is 100%.
Bootstrap support for L0P8J2 as seed ortholog is 100%.

Group of orthologs #207. Best score 214 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.jiroveci:105

Q4Y160              	100.00%		L0PGP6              	100.00%
Bootstrap support for Q4Y160 as seed ortholog is 99%.
Bootstrap support for L0PGP6 as seed ortholog is 99%.

Group of orthologs #208. Best score 213 bits
Score difference with first non-orthologous sequence - P.chabaudi:213 P.jiroveci:213

Q4XLH6              	100.00%		L0PDI7              	100.00%
Bootstrap support for Q4XLH6 as seed ortholog is 100%.
Bootstrap support for L0PDI7 as seed ortholog is 100%.

Group of orthologs #209. Best score 213 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:79

Q4XX91              	100.00%		L0PC98              	100.00%
Bootstrap support for Q4XX91 as seed ortholog is 88%.
Bootstrap support for L0PC98 as seed ortholog is 95%.

Group of orthologs #210. Best score 213 bits
Score difference with first non-orthologous sequence - P.chabaudi:213 P.jiroveci:213

Q4Y283              	100.00%		L0PFX1              	100.00%
Bootstrap support for Q4Y283 as seed ortholog is 100%.
Bootstrap support for L0PFX1 as seed ortholog is 100%.

Group of orthologs #211. Best score 212 bits
Score difference with first non-orthologous sequence - P.chabaudi:212 P.jiroveci:212

Q4XDV6              	100.00%		L0PCR8              	100.00%
                    	       		L0PH75              	91.48%
Bootstrap support for Q4XDV6 as seed ortholog is 100%.
Bootstrap support for L0PCR8 as seed ortholog is 100%.

Group of orthologs #212. Best score 212 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.jiroveci:212

Q4XU30              	100.00%		L0PF73              	100.00%
Bootstrap support for Q4XU30 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #213. Best score 212 bits
Score difference with first non-orthologous sequence - P.chabaudi:158 P.jiroveci:109

Q4Y0J3              	100.00%		L0PFY7              	100.00%
Bootstrap support for Q4Y0J3 as seed ortholog is 100%.
Bootstrap support for L0PFY7 as seed ortholog is 99%.

Group of orthologs #214. Best score 210 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.jiroveci:210

Q4XPL9              	100.00%		L0PBF3              	100.00%
Bootstrap support for Q4XPL9 as seed ortholog is 100%.
Bootstrap support for L0PBF3 as seed ortholog is 100%.

Group of orthologs #215. Best score 210 bits
Score difference with first non-orthologous sequence - P.chabaudi:210 P.jiroveci:210

Q4XNE9              	100.00%		L0PE58              	100.00%
Bootstrap support for Q4XNE9 as seed ortholog is 100%.
Bootstrap support for L0PE58 as seed ortholog is 100%.

Group of orthologs #216. Best score 209 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.jiroveci:104

Q4X5A4              	100.00%		L0PG51              	100.00%
Bootstrap support for Q4X5A4 as seed ortholog is 99%.
Bootstrap support for L0PG51 as seed ortholog is 99%.

Group of orthologs #217. Best score 208 bits
Score difference with first non-orthologous sequence - P.chabaudi:208 P.jiroveci:208

Q4Y068              	100.00%		L0P7H2              	100.00%
Bootstrap support for Q4Y068 as seed ortholog is 100%.
Bootstrap support for L0P7H2 as seed ortholog is 100%.

Group of orthologs #218. Best score 208 bits
Score difference with first non-orthologous sequence - P.chabaudi:208 P.jiroveci:111

Q4XWC7              	100.00%		L0PGH3              	100.00%
Bootstrap support for Q4XWC7 as seed ortholog is 100%.
Bootstrap support for L0PGH3 as seed ortholog is 99%.

Group of orthologs #219. Best score 206 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.jiroveci:206

Q4XZQ6              	100.00%		L0PB10              	100.00%
Bootstrap support for Q4XZQ6 as seed ortholog is 99%.
Bootstrap support for L0PB10 as seed ortholog is 100%.

Group of orthologs #220. Best score 206 bits
Score difference with first non-orthologous sequence - P.chabaudi:206 P.jiroveci:206

Q4Y1I1              	100.00%		L0PA72              	100.00%
Bootstrap support for Q4Y1I1 as seed ortholog is 100%.
Bootstrap support for L0PA72 as seed ortholog is 100%.

Group of orthologs #221. Best score 205 bits
Score difference with first non-orthologous sequence - P.chabaudi:205 P.jiroveci:205

Q4Y862              	100.00%		L0P6P2              	100.00%
Q4XHI1              	65.48%		
Bootstrap support for Q4Y862 as seed ortholog is 100%.
Bootstrap support for L0P6P2 as seed ortholog is 100%.

Group of orthologs #222. Best score 205 bits
Score difference with first non-orthologous sequence - P.chabaudi:205 P.jiroveci:205

Q4X909              	100.00%		L0PDR3              	100.00%
Bootstrap support for Q4X909 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #223. Best score 205 bits
Score difference with first non-orthologous sequence - P.chabaudi:205 P.jiroveci:105

Q4Y7S4              	100.00%		L0PHI3              	100.00%
Bootstrap support for Q4Y7S4 as seed ortholog is 100%.
Bootstrap support for L0PHI3 as seed ortholog is 99%.

Group of orthologs #224. Best score 204 bits
Score difference with first non-orthologous sequence - P.chabaudi:204 P.jiroveci:204

Q4X6J0              	100.00%		L0PE77              	100.00%
Bootstrap support for Q4X6J0 as seed ortholog is 100%.
Bootstrap support for L0PE77 as seed ortholog is 100%.

Group of orthologs #225. Best score 203 bits
Score difference with first non-orthologous sequence - P.chabaudi:203 P.jiroveci:203

Q4XM50              	100.00%		L0P8J0              	100.00%
Bootstrap support for Q4XM50 as seed ortholog is 100%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #226. Best score 203 bits
Score difference with first non-orthologous sequence - P.chabaudi:203 P.jiroveci:203

Q4XST6              	100.00%		L0PB28              	100.00%
Bootstrap support for Q4XST6 as seed ortholog is 100%.
Bootstrap support for L0PB28 as seed ortholog is 100%.

Group of orthologs #227. Best score 203 bits
Score difference with first non-orthologous sequence - P.chabaudi:203 P.jiroveci:48

Q4Y088              	100.00%		L0PD43              	100.00%
Bootstrap support for Q4Y088 as seed ortholog is 100%.
Bootstrap support for L0PD43 as seed ortholog is 93%.

Group of orthologs #228. Best score 203 bits
Score difference with first non-orthologous sequence - P.chabaudi:203 P.jiroveci:203

Q4Y7V7              	100.00%		L0PF83              	100.00%
Bootstrap support for Q4Y7V7 as seed ortholog is 100%.
Bootstrap support for L0PF83 as seed ortholog is 100%.

Group of orthologs #229. Best score 202 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.jiroveci:68

Q4XMV3              	100.00%		L0PB67              	100.00%
Bootstrap support for Q4XMV3 as seed ortholog is 95%.
Bootstrap support for L0PB67 as seed ortholog is 89%.

Group of orthologs #230. Best score 201 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.jiroveci:116

Q4XZ96              	100.00%		L0P992              	100.00%
Bootstrap support for Q4XZ96 as seed ortholog is 85%.
Bootstrap support for L0P992 as seed ortholog is 99%.

Group of orthologs #231. Best score 201 bits
Score difference with first non-orthologous sequence - P.chabaudi:201 P.jiroveci:201

Q4Y7G2              	100.00%		L0PG48              	100.00%
Bootstrap support for Q4Y7G2 as seed ortholog is 100%.
Bootstrap support for L0PG48 as seed ortholog is 100%.

Group of orthologs #232. Best score 200 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.jiroveci:200

Q4XA45              	100.00%		L0PET2              	100.00%
                    	       		L0PAE5              	87.06%
Bootstrap support for Q4XA45 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 100%.

Group of orthologs #233. Best score 199 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.jiroveci:199

Q4XTY0              	100.00%		L0PDR7              	100.00%
Bootstrap support for Q4XTY0 as seed ortholog is 99%.
Bootstrap support for L0PDR7 as seed ortholog is 100%.

Group of orthologs #234. Best score 198 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.jiroveci:115

Q4Y8B5              	100.00%		L0P8I7              	100.00%
Bootstrap support for Q4Y8B5 as seed ortholog is 99%.
Bootstrap support for L0P8I7 as seed ortholog is 100%.

Group of orthologs #235. Best score 197 bits
Score difference with first non-orthologous sequence - P.chabaudi:197 P.jiroveci:197

Q4XN56              	100.00%		L0PFN9              	100.00%
                    	       		L0PEF0              	33.37%
Bootstrap support for Q4XN56 as seed ortholog is 100%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #236. Best score 195 bits
Score difference with first non-orthologous sequence - P.chabaudi:195 P.jiroveci:195

Q4X3M7              	100.00%		L0PEK9              	100.00%
Bootstrap support for Q4X3M7 as seed ortholog is 100%.
Bootstrap support for L0PEK9 as seed ortholog is 100%.

Group of orthologs #237. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:193 P.jiroveci:193

Q4XP00              	100.00%		L0P896              	100.00%
Bootstrap support for Q4XP00 as seed ortholog is 100%.
Bootstrap support for L0P896 as seed ortholog is 100%.

Group of orthologs #238. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:134 P.jiroveci:193

Q4XYE6              	100.00%		L0PCJ2              	100.00%
Bootstrap support for Q4XYE6 as seed ortholog is 100%.
Bootstrap support for L0PCJ2 as seed ortholog is 100%.

Group of orthologs #239. Best score 193 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:84

Q4XXN0              	100.00%		L0PFN2              	100.00%
Bootstrap support for Q4XXN0 as seed ortholog is 100%.
Bootstrap support for L0PFN2 as seed ortholog is 99%.

Group of orthologs #240. Best score 191 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.jiroveci:191

Q4XSJ4              	100.00%		L0PAS1              	100.00%
Q4XI61              	49.61%		
Bootstrap support for Q4XSJ4 as seed ortholog is 100%.
Bootstrap support for L0PAS1 as seed ortholog is 100%.

Group of orthologs #241. Best score 191 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.jiroveci:191

Q4XV49              	100.00%		L0PAS8              	100.00%
Bootstrap support for Q4XV49 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #242. Best score 191 bits
Score difference with first non-orthologous sequence - P.chabaudi:191 P.jiroveci:86

Q4Y142              	100.00%		L0PE17              	100.00%
Bootstrap support for Q4Y142 as seed ortholog is 100%.
Bootstrap support for L0PE17 as seed ortholog is 99%.

Group of orthologs #243. Best score 189 bits
Score difference with first non-orthologous sequence - P.chabaudi:189 P.jiroveci:101

Q4XVG9              	100.00%		L0PG93              	100.00%
Bootstrap support for Q4XVG9 as seed ortholog is 100%.
Bootstrap support for L0PG93 as seed ortholog is 99%.

Group of orthologs #244. Best score 188 bits
Score difference with first non-orthologous sequence - P.chabaudi:188 P.jiroveci:188

Q4XD44              	100.00%		L0PB66              	100.00%
Bootstrap support for Q4XD44 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #245. Best score 188 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.jiroveci:188

Q4XDT7              	100.00%		L0PBS9              	100.00%
Bootstrap support for Q4XDT7 as seed ortholog is 85%.
Bootstrap support for L0PBS9 as seed ortholog is 100%.

Group of orthologs #246. Best score 188 bits
Score difference with first non-orthologous sequence - P.chabaudi:188 P.jiroveci:188

Q4XSM3              	100.00%		L0PAE8              	100.00%
Bootstrap support for Q4XSM3 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #247. Best score 188 bits
Score difference with first non-orthologous sequence - P.chabaudi:188 P.jiroveci:188

Q4XVH7              	100.00%		L0PB98              	100.00%
Bootstrap support for Q4XVH7 as seed ortholog is 100%.
Bootstrap support for L0PB98 as seed ortholog is 100%.

Group of orthologs #248. Best score 186 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.jiroveci:73

Q4X653              	100.00%		L0PHW8              	100.00%
Bootstrap support for Q4X653 as seed ortholog is 99%.
Bootstrap support for L0PHW8 as seed ortholog is 99%.

Group of orthologs #249. Best score 186 bits
Score difference with first non-orthologous sequence - P.chabaudi:15 P.jiroveci:186

Q4XXR9              	100.00%		L0PCK3              	100.00%
Bootstrap support for Q4XXR9 as seed ortholog is 71%.
Alternative seed ortholog is Q4XQE6 (15 bits away from this cluster)
Bootstrap support for L0PCK3 as seed ortholog is 100%.

Group of orthologs #250. Best score 186 bits
Score difference with first non-orthologous sequence - P.chabaudi:186 P.jiroveci:186

Q4Y4I9              	100.00%		L0PBZ6              	100.00%
Bootstrap support for Q4Y4I9 as seed ortholog is 100%.
Bootstrap support for L0PBZ6 as seed ortholog is 100%.

Group of orthologs #251. Best score 185 bits
Score difference with first non-orthologous sequence - P.chabaudi:185 P.jiroveci:126

Q4XZR6              	100.00%		L0PD82              	100.00%
                    	       		L0P6Q8              	33.41%
Bootstrap support for Q4XZR6 as seed ortholog is 100%.
Bootstrap support for L0PD82 as seed ortholog is 99%.

Group of orthologs #252. Best score 184 bits
Score difference with first non-orthologous sequence - P.chabaudi:184 P.jiroveci:184

Q4XUL6              	100.00%		L0PG08              	100.00%
Bootstrap support for Q4XUL6 as seed ortholog is 100%.
Bootstrap support for L0PG08 as seed ortholog is 100%.

Group of orthologs #253. Best score 183 bits
Score difference with first non-orthologous sequence - P.chabaudi:183 P.jiroveci:135

Q4XMS8              	100.00%		L0PIJ3              	100.00%
                    	       		L0PEP1              	84.35%
Bootstrap support for Q4XMS8 as seed ortholog is 100%.
Bootstrap support for L0PIJ3 as seed ortholog is 100%.

Group of orthologs #254. Best score 182 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.jiroveci:182

Q4XW09              	100.00%		L0P7P4              	100.00%
Bootstrap support for Q4XW09 as seed ortholog is 98%.
Bootstrap support for L0P7P4 as seed ortholog is 100%.

Group of orthologs #255. Best score 180 bits
Score difference with first non-orthologous sequence - P.chabaudi:180 P.jiroveci:180

Q4XYK2              	100.00%		L0PBL5              	100.00%
Q4X869              	47.24%		
Bootstrap support for Q4XYK2 as seed ortholog is 100%.
Bootstrap support for L0PBL5 as seed ortholog is 100%.

Group of orthologs #256. Best score 180 bits
Score difference with first non-orthologous sequence - P.chabaudi:180 P.jiroveci:180

Q4Y5T5              	100.00%		L0P9I0              	100.00%
Bootstrap support for Q4Y5T5 as seed ortholog is 100%.
Bootstrap support for L0P9I0 as seed ortholog is 100%.

Group of orthologs #257. Best score 178 bits
Score difference with first non-orthologous sequence - P.chabaudi:178 P.jiroveci:178

Q4Y385              	100.00%		L0PAF9              	100.00%
Q4XFZ3              	50.40%		
Bootstrap support for Q4Y385 as seed ortholog is 100%.
Bootstrap support for L0PAF9 as seed ortholog is 100%.

Group of orthologs #258. Best score 178 bits
Score difference with first non-orthologous sequence - P.chabaudi:178 P.jiroveci:178

Q4X5R8              	100.00%		L0PF13              	100.00%
Bootstrap support for Q4X5R8 as seed ortholog is 100%.
Bootstrap support for L0PF13 as seed ortholog is 100%.

Group of orthologs #259. Best score 177 bits
Score difference with first non-orthologous sequence - P.chabaudi:177 P.jiroveci:177

Q4XFJ9              	100.00%		L0PBE8              	100.00%
Bootstrap support for Q4XFJ9 as seed ortholog is 100%.
Bootstrap support for L0PBE8 as seed ortholog is 100%.

Group of orthologs #260. Best score 177 bits
Score difference with first non-orthologous sequence - P.chabaudi:177 P.jiroveci:177

Q4XEL0              	100.00%		L0PFQ4              	100.00%
Bootstrap support for Q4XEL0 as seed ortholog is 100%.
Bootstrap support for L0PFQ4 as seed ortholog is 100%.

Group of orthologs #261. Best score 177 bits
Score difference with first non-orthologous sequence - P.chabaudi:177 P.jiroveci:177

Q4Y4J0              	100.00%		L0PID0              	100.00%
Bootstrap support for Q4Y4J0 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 100%.

Group of orthologs #262. Best score 176 bits
Score difference with first non-orthologous sequence - P.chabaudi:176 P.jiroveci:176

Q4Y1F6              	100.00%		L0PEX5              	100.00%
Bootstrap support for Q4Y1F6 as seed ortholog is 100%.
Bootstrap support for L0PEX5 as seed ortholog is 100%.

Group of orthologs #263. Best score 175 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.jiroveci:175

Q4XF63              	100.00%		L0PDT8              	100.00%
                    	       		L0P9R2              	91.84%
Bootstrap support for Q4XF63 as seed ortholog is 94%.
Bootstrap support for L0PDT8 as seed ortholog is 100%.

Group of orthologs #264. Best score 174 bits
Score difference with first non-orthologous sequence - P.chabaudi:174 P.jiroveci:174

Q4Y5D1              	100.00%		L0PD65              	100.00%
Bootstrap support for Q4Y5D1 as seed ortholog is 100%.
Bootstrap support for L0PD65 as seed ortholog is 100%.

Group of orthologs #265. Best score 173 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.jiroveci:173

Q4XMV7              	100.00%		L0PCH8              	100.00%
Bootstrap support for Q4XMV7 as seed ortholog is 98%.
Bootstrap support for L0PCH8 as seed ortholog is 100%.

Group of orthologs #266. Best score 173 bits
Score difference with first non-orthologous sequence - P.chabaudi:173 P.jiroveci:173

Q4XQN0              	100.00%		L0PHG7              	100.00%
Bootstrap support for Q4XQN0 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 100%.

Group of orthologs #267. Best score 173 bits
Score difference with first non-orthologous sequence - P.chabaudi:173 P.jiroveci:173

Q4XUY5              	100.00%		L0PEG2              	100.00%
Bootstrap support for Q4XUY5 as seed ortholog is 100%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #268. Best score 172 bits
Score difference with first non-orthologous sequence - P.chabaudi:172 P.jiroveci:172

Q4Y4V5              	100.00%		L0PHG9              	100.00%
Bootstrap support for Q4Y4V5 as seed ortholog is 100%.
Bootstrap support for L0PHG9 as seed ortholog is 100%.

Group of orthologs #269. Best score 171 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.jiroveci:69

Q4X4M9              	100.00%		L0P863              	100.00%
Q4X8E4              	64.81%		
Bootstrap support for Q4X4M9 as seed ortholog is 99%.
Bootstrap support for L0P863 as seed ortholog is 94%.

Group of orthologs #270. Best score 171 bits
Score difference with first non-orthologous sequence - P.chabaudi:13 P.jiroveci:37

Q4XSU7              	100.00%		L0PC59              	100.00%
                    	       		L0P9E4              	12.30%
Bootstrap support for Q4XSU7 as seed ortholog is 77%.
Bootstrap support for L0PC59 as seed ortholog is 95%.

Group of orthologs #271. Best score 171 bits
Score difference with first non-orthologous sequence - P.chabaudi:171 P.jiroveci:171

Q4XN87              	100.00%		L0PDH2              	100.00%
Bootstrap support for Q4XN87 as seed ortholog is 100%.
Bootstrap support for L0PDH2 as seed ortholog is 100%.

Group of orthologs #272. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.jiroveci:69

Q4XMR4              	100.00%		L0P7B1              	100.00%
Bootstrap support for Q4XMR4 as seed ortholog is 99%.
Bootstrap support for L0P7B1 as seed ortholog is 99%.

Group of orthologs #273. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.jiroveci:170

Q4XUL7              	100.00%		L0P9M9              	100.00%
Bootstrap support for Q4XUL7 as seed ortholog is 100%.
Bootstrap support for L0P9M9 as seed ortholog is 100%.

Group of orthologs #274. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.jiroveci:170

Q4Y2J5              	100.00%		L0P8T4              	100.00%
Bootstrap support for Q4Y2J5 as seed ortholog is 100%.
Bootstrap support for L0P8T4 as seed ortholog is 100%.

Group of orthologs #275. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:46

Q4Y4R8              	100.00%		L0P8L5              	100.00%
Bootstrap support for Q4Y4R8 as seed ortholog is 99%.
Bootstrap support for L0P8L5 as seed ortholog is 99%.

Group of orthologs #276. Best score 170 bits
Score difference with first non-orthologous sequence - P.chabaudi:170 P.jiroveci:170

Q4Y410              	100.00%		L0PC18              	100.00%
Bootstrap support for Q4Y410 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #277. Best score 169 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.jiroveci:169

Q4Y1T6              	100.00%		L0P7R5              	100.00%
Q4XJ63              	44.59%		
Bootstrap support for Q4Y1T6 as seed ortholog is 100%.
Bootstrap support for L0P7R5 as seed ortholog is 100%.

Group of orthologs #278. Best score 169 bits
Score difference with first non-orthologous sequence - P.chabaudi:169 P.jiroveci:169

Q4XAC4              	100.00%		L0PEN7              	100.00%
Bootstrap support for Q4XAC4 as seed ortholog is 100%.
Bootstrap support for L0PEN7 as seed ortholog is 100%.

Group of orthologs #279. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.jiroveci:95

Q4XRI0              	100.00%		L0PG24              	100.00%
Bootstrap support for Q4XRI0 as seed ortholog is 98%.
Bootstrap support for L0PG24 as seed ortholog is 99%.

Group of orthologs #280. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:168 P.jiroveci:87

Q4XZS5              	100.00%		L0PBV6              	100.00%
Bootstrap support for Q4XZS5 as seed ortholog is 100%.
Bootstrap support for L0PBV6 as seed ortholog is 98%.

Group of orthologs #281. Best score 168 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.jiroveci:108

Q4Y613              	100.00%		L0PEX1              	100.00%
Bootstrap support for Q4Y613 as seed ortholog is 99%.
Bootstrap support for L0PEX1 as seed ortholog is 99%.

Group of orthologs #282. Best score 167 bits
Score difference with first non-orthologous sequence - P.chabaudi:167 P.jiroveci:167

Q4XLW2              	100.00%		L0PF79              	100.00%
Bootstrap support for Q4XLW2 as seed ortholog is 100%.
Bootstrap support for L0PF79 as seed ortholog is 100%.

Group of orthologs #283. Best score 167 bits
Score difference with first non-orthologous sequence - P.chabaudi:167 P.jiroveci:167

Q4XXD4              	100.00%		L0PGY0              	100.00%
Bootstrap support for Q4XXD4 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #284. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:39 P.jiroveci:22

Q4XV45              	100.00%		L0PCN5              	100.00%
Q4XW47              	19.00%		L0P7B6              	92.99%
Bootstrap support for Q4XV45 as seed ortholog is 90%.
Bootstrap support for L0PCN5 as seed ortholog is 69%.
Alternative seed ortholog is L0PGT4 (22 bits away from this cluster)

Group of orthologs #285. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:166 P.jiroveci:107

Q4XZN2              	100.00%		L0P9N5              	100.00%
Bootstrap support for Q4XZN2 as seed ortholog is 100%.
Bootstrap support for L0P9N5 as seed ortholog is 100%.

Group of orthologs #286. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:166 P.jiroveci:166

Q4Y3Q4              	100.00%		L0PC53              	100.00%
Bootstrap support for Q4Y3Q4 as seed ortholog is 100%.
Bootstrap support for L0PC53 as seed ortholog is 100%.

Group of orthologs #287. Best score 166 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:166

Q4Y4Y4              	100.00%		L0PBE9              	100.00%
Bootstrap support for Q4Y4Y4 as seed ortholog is 88%.
Bootstrap support for L0PBE9 as seed ortholog is 100%.

Group of orthologs #288. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:36 P.jiroveci:62

Q4Y0C9              	100.00%		L0P7X4              	100.00%
                    	       		L0P7L8              	6.30%
Bootstrap support for Q4Y0C9 as seed ortholog is 96%.
Bootstrap support for L0P7X4 as seed ortholog is 98%.

Group of orthologs #289. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:165 P.jiroveci:165

Q4XPX4              	100.00%		L0PFZ0              	100.00%
Bootstrap support for Q4XPX4 as seed ortholog is 100%.
Bootstrap support for L0PFZ0 as seed ortholog is 100%.

Group of orthologs #290. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:165 P.jiroveci:165

Q4XUN8              	100.00%		L0PDI1              	100.00%
Bootstrap support for Q4XUN8 as seed ortholog is 100%.
Bootstrap support for L0PDI1 as seed ortholog is 100%.

Group of orthologs #291. Best score 165 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.jiroveci:76

Q4Y7G6              	100.00%		L0P9F9              	100.00%
Bootstrap support for Q4Y7G6 as seed ortholog is 99%.
Bootstrap support for L0P9F9 as seed ortholog is 99%.

Group of orthologs #292. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.jiroveci:164

Q4XFS7              	100.00%		L0P838              	100.00%
Q4XNF8              	44.15%		
Q4Y012              	41.49%		
Bootstrap support for Q4XFS7 as seed ortholog is 96%.
Bootstrap support for L0P838 as seed ortholog is 100%.

Group of orthologs #293. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:164 P.jiroveci:164

Q4XQG1              	100.00%		L0PBN7              	100.00%
Bootstrap support for Q4XQG1 as seed ortholog is 100%.
Bootstrap support for L0PBN7 as seed ortholog is 100%.

Group of orthologs #294. Best score 164 bits
Score difference with first non-orthologous sequence - P.chabaudi:164 P.jiroveci:164

Q4XY04              	100.00%		L0PDT0              	100.00%
Bootstrap support for Q4XY04 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #295. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:162 P.jiroveci:162

Q4XYM3              	100.00%		L0PDV6              	100.00%
Q4X628              	52.26%		
Bootstrap support for Q4XYM3 as seed ortholog is 100%.
Bootstrap support for L0PDV6 as seed ortholog is 100%.

Group of orthologs #296. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:34 P.jiroveci:32

Q4XE23              	100.00%		L0P8M4              	100.00%
Bootstrap support for Q4XE23 as seed ortholog is 89%.
Bootstrap support for L0P8M4 as seed ortholog is 91%.

Group of orthologs #297. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:162 P.jiroveci:162

Q4XT56              	100.00%		L0PCC1              	100.00%
Bootstrap support for Q4XT56 as seed ortholog is 100%.
Bootstrap support for L0PCC1 as seed ortholog is 100%.

Group of orthologs #298. Best score 162 bits
Score difference with first non-orthologous sequence - P.chabaudi:162 P.jiroveci:162

Q4XX95              	100.00%		L0P9Y2              	100.00%
Bootstrap support for Q4XX95 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #299. Best score 161 bits
Score difference with first non-orthologous sequence - P.chabaudi:161 P.jiroveci:161

Q4XQA5              	100.00%		L0PEW5              	100.00%
Bootstrap support for Q4XQA5 as seed ortholog is 100%.
Bootstrap support for L0PEW5 as seed ortholog is 100%.

Group of orthologs #300. Best score 161 bits
Score difference with first non-orthologous sequence - P.chabaudi:25 P.jiroveci:161

Q4Y227              	100.00%		L0PG89              	100.00%
Bootstrap support for Q4Y227 as seed ortholog is 73%.
Alternative seed ortholog is Q4XNM3 (25 bits away from this cluster)
Bootstrap support for L0PG89 as seed ortholog is 100%.

Group of orthologs #301. Best score 160 bits
Score difference with first non-orthologous sequence - P.chabaudi:160 P.jiroveci:160

Q4XSX2              	100.00%		L0PAC1              	100.00%
Q4X7Y2              	35.60%		
Bootstrap support for Q4XSX2 as seed ortholog is 100%.
Bootstrap support for L0PAC1 as seed ortholog is 100%.

Group of orthologs #302. Best score 160 bits
Score difference with first non-orthologous sequence - P.chabaudi:160 P.jiroveci:160

Q4XM07              	100.00%		L0PDL5              	100.00%
Bootstrap support for Q4XM07 as seed ortholog is 100%.
Bootstrap support for L0PDL5 as seed ortholog is 100%.

Group of orthologs #303. Best score 159 bits
Score difference with first non-orthologous sequence - P.chabaudi:159 P.jiroveci:159

Q4XC20              	100.00%		L0PDA9              	100.00%
Bootstrap support for Q4XC20 as seed ortholog is 100%.
Bootstrap support for L0PDA9 as seed ortholog is 100%.

Group of orthologs #304. Best score 159 bits
Score difference with first non-orthologous sequence - P.chabaudi:159 P.jiroveci:159

Q4XQ98              	100.00%		L0PAA8              	100.00%
Bootstrap support for Q4XQ98 as seed ortholog is 100%.
Bootstrap support for L0PAA8 as seed ortholog is 100%.

Group of orthologs #305. Best score 159 bits
Score difference with first non-orthologous sequence - P.chabaudi:159 P.jiroveci:159

Q4XXL6              	100.00%		L0P8B2              	100.00%
Bootstrap support for Q4XXL6 as seed ortholog is 100%.
Bootstrap support for L0P8B2 as seed ortholog is 100%.

Group of orthologs #306. Best score 158 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.jiroveci:158

Q4Y4B4              	100.00%		L0PB84              	100.00%
Q4XF21              	39.53%		
Bootstrap support for Q4Y4B4 as seed ortholog is 99%.
Bootstrap support for L0PB84 as seed ortholog is 100%.

Group of orthologs #307. Best score 158 bits
Score difference with first non-orthologous sequence - P.chabaudi:158 P.jiroveci:27

Q4XVZ8              	100.00%		L0PAA4              	100.00%
Bootstrap support for Q4XVZ8 as seed ortholog is 100%.
Bootstrap support for L0PAA4 as seed ortholog is 73%.
Alternative seed ortholog is L0PBF6 (27 bits away from this cluster)

Group of orthologs #308. Best score 157 bits
Score difference with first non-orthologous sequence - P.chabaudi:157 P.jiroveci:157

Q4XZD8              	100.00%		L0PDZ2              	100.00%
Bootstrap support for Q4XZD8 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #309. Best score 156 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:156

Q4XQ56              	100.00%		L0PBT0              	100.00%
Bootstrap support for Q4XQ56 as seed ortholog is 99%.
Bootstrap support for L0PBT0 as seed ortholog is 100%.

Group of orthologs #310. Best score 155 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.jiroveci:71

Q4X2G4              	100.00%		L0PEX6              	100.00%
Q4XKW7              	21.48%		
Bootstrap support for Q4X2G4 as seed ortholog is 94%.
Bootstrap support for L0PEX6 as seed ortholog is 98%.

Group of orthologs #311. Best score 155 bits
Score difference with first non-orthologous sequence - P.chabaudi:155 P.jiroveci:155

Q4XKX2              	100.00%		L0PD35              	100.00%
Bootstrap support for Q4XKX2 as seed ortholog is 100%.
Bootstrap support for L0PD35 as seed ortholog is 100%.

Group of orthologs #312. Best score 155 bits
Score difference with first non-orthologous sequence - P.chabaudi:155 P.jiroveci:155

Q4Y3H9              	100.00%		L0PBU7              	100.00%
Bootstrap support for Q4Y3H9 as seed ortholog is 100%.
Bootstrap support for L0PBU7 as seed ortholog is 100%.

Group of orthologs #313. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.jiroveci:13

Q4Y2T8              	100.00%		L0PGX9              	100.00%
Q4XCJ8              	37.34%		
Bootstrap support for Q4Y2T8 as seed ortholog is 99%.
Bootstrap support for L0PGX9 as seed ortholog is 63%.
Alternative seed ortholog is L0PFU1 (13 bits away from this cluster)

Group of orthologs #314. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:154 P.jiroveci:154

Q4XBT4              	100.00%		L0P9M6              	100.00%
Bootstrap support for Q4XBT4 as seed ortholog is 100%.
Bootstrap support for L0P9M6 as seed ortholog is 100%.

Group of orthologs #315. Best score 154 bits
Score difference with first non-orthologous sequence - P.chabaudi:154 P.jiroveci:154

Q4Y699              	100.00%		L0PCW8              	100.00%
Bootstrap support for Q4Y699 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #316. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:9 P.jiroveci:153

Q4Y2T1              	100.00%		L0PAQ7              	100.00%
                    	       		L0PE93              	6.59%
Bootstrap support for Q4Y2T1 as seed ortholog is 61%.
Alternative seed ortholog is Q4XTN5 (9 bits away from this cluster)
Bootstrap support for L0PAQ7 as seed ortholog is 100%.

Group of orthologs #317. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:4 P.jiroveci:153

Q4XFA8              	100.00%		L0PH51              	100.00%
Bootstrap support for Q4XFA8 as seed ortholog is 56%.
Alternative seed ortholog is Q4X9U2 (4 bits away from this cluster)
Bootstrap support for L0PH51 as seed ortholog is 100%.

Group of orthologs #318. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.jiroveci:153

Q4XNZ2              	100.00%		L0PAE9              	100.00%
Bootstrap support for Q4XNZ2 as seed ortholog is 100%.
Bootstrap support for L0PAE9 as seed ortholog is 100%.

Group of orthologs #319. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:153

Q4XS93              	100.00%		L0PFZ1              	100.00%
Bootstrap support for Q4XS93 as seed ortholog is 99%.
Bootstrap support for L0PFZ1 as seed ortholog is 100%.

Group of orthologs #320. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.jiroveci:153

Q4XZG4              	100.00%		L0PH54              	100.00%
Bootstrap support for Q4XZG4 as seed ortholog is 100%.
Bootstrap support for L0PH54 as seed ortholog is 100%.

Group of orthologs #321. Best score 153 bits
Score difference with first non-orthologous sequence - P.chabaudi:153 P.jiroveci:153

Q4Y874              	100.00%		L0P8N3              	100.00%
Bootstrap support for Q4Y874 as seed ortholog is 100%.
Bootstrap support for L0P8N3 as seed ortholog is 100%.

Group of orthologs #322. Best score 152 bits
Score difference with first non-orthologous sequence - P.chabaudi:152 P.jiroveci:152

Q4Y6Z5              	100.00%		L0PFE9              	100.00%
Bootstrap support for Q4Y6Z5 as seed ortholog is 100%.
Bootstrap support for L0PFE9 as seed ortholog is 100%.

Group of orthologs #323. Best score 151 bits
Score difference with first non-orthologous sequence - P.chabaudi:151 P.jiroveci:151

Q4XEE4              	100.00%		L0P800              	100.00%
Bootstrap support for Q4XEE4 as seed ortholog is 100%.
Bootstrap support for L0P800 as seed ortholog is 100%.

Group of orthologs #324. Best score 151 bits
Score difference with first non-orthologous sequence - P.chabaudi:151 P.jiroveci:151

Q4XEJ4              	100.00%		L0PAT1              	100.00%
Bootstrap support for Q4XEJ4 as seed ortholog is 100%.
Bootstrap support for L0PAT1 as seed ortholog is 100%.

Group of orthologs #325. Best score 150 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.jiroveci:150

Q4XSA3              	100.00%		L0PA78              	100.00%
Bootstrap support for Q4XSA3 as seed ortholog is 100%.
Bootstrap support for L0PA78 as seed ortholog is 100%.

Group of orthologs #326. Best score 150 bits
Score difference with first non-orthologous sequence - P.chabaudi:150 P.jiroveci:150

Q4XRL4              	100.00%		L0PDC7              	100.00%
Bootstrap support for Q4XRL4 as seed ortholog is 100%.
Bootstrap support for L0PDC7 as seed ortholog is 100%.

Group of orthologs #327. Best score 149 bits
Score difference with first non-orthologous sequence - P.chabaudi:149 P.jiroveci:149

Q4Y163              	100.00%		L0PDW5              	100.00%
Bootstrap support for Q4Y163 as seed ortholog is 100%.
Bootstrap support for L0PDW5 as seed ortholog is 100%.

Group of orthologs #328. Best score 149 bits
Score difference with first non-orthologous sequence - P.chabaudi:149 P.jiroveci:149

Q4Y7U3              	100.00%		L0PGN1              	100.00%
Bootstrap support for Q4Y7U3 as seed ortholog is 100%.
Bootstrap support for L0PGN1 as seed ortholog is 100%.

Group of orthologs #329. Best score 148 bits
Score difference with first non-orthologous sequence - P.chabaudi:148 P.jiroveci:148

Q4XZM9              	100.00%		L0PFN4              	100.00%
Bootstrap support for Q4XZM9 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #330. Best score 147 bits
Score difference with first non-orthologous sequence - P.chabaudi:147 P.jiroveci:147

Q4XXS7              	100.00%		L0PFV0              	100.00%
                    	       		L0PEK6              	53.11%
                    	       		L0PFS2              	35.73%
                    	       		L0PBI1              	8.37%
Bootstrap support for Q4XXS7 as seed ortholog is 100%.
Bootstrap support for L0PFV0 as seed ortholog is 100%.

Group of orthologs #331. Best score 147 bits
Score difference with first non-orthologous sequence - P.chabaudi:93 P.jiroveci:147

Q4XX78              	100.00%		L0PDB8              	100.00%
Q4XWM9              	21.77%		
Bootstrap support for Q4XX78 as seed ortholog is 99%.
Bootstrap support for L0PDB8 as seed ortholog is 100%.

Group of orthologs #332. Best score 147 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.jiroveci:147

Q4Y175              	100.00%		L0PEH7              	100.00%
Bootstrap support for Q4Y175 as seed ortholog is 93%.
Bootstrap support for L0PEH7 as seed ortholog is 100%.

Group of orthologs #333. Best score 147 bits
Score difference with first non-orthologous sequence - P.chabaudi:147 P.jiroveci:147

Q4Y1N5              	100.00%		L0PFL0              	100.00%
Bootstrap support for Q4Y1N5 as seed ortholog is 100%.
Bootstrap support for L0PFL0 as seed ortholog is 100%.

Group of orthologs #334. Best score 147 bits
Score difference with first non-orthologous sequence - P.chabaudi:147 P.jiroveci:147

Q4Y8U5              	100.00%		L0P8K8              	100.00%
Bootstrap support for Q4Y8U5 as seed ortholog is 100%.
Bootstrap support for L0P8K8 as seed ortholog is 100%.

Group of orthologs #335. Best score 146 bits
Score difference with first non-orthologous sequence - P.chabaudi:146 P.jiroveci:146

Q4XI76              	100.00%		L0P9T2              	100.00%
Bootstrap support for Q4XI76 as seed ortholog is 100%.
Bootstrap support for L0P9T2 as seed ortholog is 100%.

Group of orthologs #336. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.jiroveci:144

Q4XEX1              	100.00%		L0PDT4              	100.00%
Q4XX40              	76.97%		
Bootstrap support for Q4XEX1 as seed ortholog is 100%.
Bootstrap support for L0PDT4 as seed ortholog is 100%.

Group of orthologs #337. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.jiroveci:144

Q4XQD5              	100.00%		L0P6V9              	100.00%
Bootstrap support for Q4XQD5 as seed ortholog is 100%.
Bootstrap support for L0P6V9 as seed ortholog is 100%.

Group of orthologs #338. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.jiroveci:144

Q4XUN1              	100.00%		L0PFR4              	100.00%
Bootstrap support for Q4XUN1 as seed ortholog is 100%.
Bootstrap support for L0PFR4 as seed ortholog is 100%.

Group of orthologs #339. Best score 144 bits
Score difference with first non-orthologous sequence - P.chabaudi:144 P.jiroveci:144

Q4Y895              	100.00%		L0PEC6              	100.00%
Bootstrap support for Q4Y895 as seed ortholog is 100%.
Bootstrap support for L0PEC6 as seed ortholog is 100%.

Group of orthologs #340. Best score 143 bits
Score difference with first non-orthologous sequence - P.chabaudi:143 P.jiroveci:143

Q4XNP6              	100.00%		L0PE85              	100.00%
Q4X5V3              	40.22%		
Bootstrap support for Q4XNP6 as seed ortholog is 100%.
Bootstrap support for L0PE85 as seed ortholog is 100%.

Group of orthologs #341. Best score 143 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.jiroveci:143

Q4X7B3              	100.00%		L0PCA8              	100.00%
Bootstrap support for Q4X7B3 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #342. Best score 143 bits
Score difference with first non-orthologous sequence - P.chabaudi:143 P.jiroveci:143

Q4XTR1              	100.00%		L0PGE7              	100.00%
Bootstrap support for Q4XTR1 as seed ortholog is 100%.
Bootstrap support for L0PGE7 as seed ortholog is 100%.

Group of orthologs #343. Best score 142 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.jiroveci:142

Q4XFT1              	100.00%		L0P934              	100.00%
Q4Y245              	100.00%		
Bootstrap support for Q4XFT1 as seed ortholog is 100%.
Bootstrap support for Q4Y245 as seed ortholog is 100%.
Bootstrap support for L0P934 as seed ortholog is 100%.

Group of orthologs #344. Best score 142 bits
Score difference with first non-orthologous sequence - P.chabaudi:142 P.jiroveci:142

Q4XF93              	100.00%		L0PFL8              	100.00%
Bootstrap support for Q4XF93 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #345. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:141 P.jiroveci:141

Q4X800              	100.00%		L0PBR7              	100.00%
Q4XQT3              	100.00%		
Q4XU65              	100.00%		
Bootstrap support for Q4X800 as seed ortholog is 100%.
Bootstrap support for Q4XQT3 as seed ortholog is 100%.
Bootstrap support for Q4XU65 as seed ortholog is 100%.
Bootstrap support for L0PBR7 as seed ortholog is 100%.

Group of orthologs #346. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:141 P.jiroveci:141

Q4XGB3              	100.00%		L0PG96              	100.00%
Bootstrap support for Q4XGB3 as seed ortholog is 100%.
Bootstrap support for L0PG96 as seed ortholog is 100%.

Group of orthologs #347. Best score 141 bits
Score difference with first non-orthologous sequence - P.chabaudi:141 P.jiroveci:141

Q4Y2G5              	100.00%		L0PEB2              	100.00%
Bootstrap support for Q4Y2G5 as seed ortholog is 100%.
Bootstrap support for L0PEB2 as seed ortholog is 100%.

Group of orthologs #348. Best score 140 bits
Score difference with first non-orthologous sequence - P.chabaudi:140 P.jiroveci:140

Q4XSB6              	100.00%		L0PGZ5              	100.00%
Bootstrap support for Q4XSB6 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #349. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:139

Q4XZ38              	100.00%		L0P9F7              	100.00%
Q4XFK5              	41.79%		L0PGP0              	85.47%
Bootstrap support for Q4XZ38 as seed ortholog is 100%.
Bootstrap support for L0P9F7 as seed ortholog is 100%.

Group of orthologs #350. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:139

Q4XL21              	100.00%		L0PCX3              	100.00%
Bootstrap support for Q4XL21 as seed ortholog is 100%.
Bootstrap support for L0PCX3 as seed ortholog is 100%.

Group of orthologs #351. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:139

Q4XWC9              	100.00%		L0P8A6              	100.00%
Bootstrap support for Q4XWC9 as seed ortholog is 100%.
Bootstrap support for L0P8A6 as seed ortholog is 100%.

Group of orthologs #352. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:37 P.jiroveci:139

Q4XR41              	100.00%		L0PEQ4              	100.00%
Bootstrap support for Q4XR41 as seed ortholog is 82%.
Bootstrap support for L0PEQ4 as seed ortholog is 100%.

Group of orthologs #353. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:139

Q4XY30              	100.00%		L0PBL6              	100.00%
Bootstrap support for Q4XY30 as seed ortholog is 100%.
Bootstrap support for L0PBL6 as seed ortholog is 100%.

Group of orthologs #354. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:39 P.jiroveci:139

Q4Y1V1              	100.00%		L0PBJ2              	100.00%
Bootstrap support for Q4Y1V1 as seed ortholog is 61%.
Alternative seed ortholog is Q4Y0Q5 (39 bits away from this cluster)
Bootstrap support for L0PBJ2 as seed ortholog is 100%.

Group of orthologs #355. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:139

Q4Y1Z2              	100.00%		L0PG81              	100.00%
Bootstrap support for Q4Y1Z2 as seed ortholog is 100%.
Bootstrap support for L0PG81 as seed ortholog is 100%.

Group of orthologs #356. Best score 139 bits
Score difference with first non-orthologous sequence - P.chabaudi:139 P.jiroveci:139

Q4Y3E5              	100.00%		L0PFC9              	100.00%
Bootstrap support for Q4Y3E5 as seed ortholog is 100%.
Bootstrap support for L0PFC9 as seed ortholog is 100%.

Group of orthologs #357. Best score 138 bits
Score difference with first non-orthologous sequence - P.chabaudi:138 P.jiroveci:138

Q4XR09              	100.00%		L0PF51              	100.00%
Bootstrap support for Q4XR09 as seed ortholog is 100%.
Bootstrap support for L0PF51 as seed ortholog is 100%.

Group of orthologs #358. Best score 138 bits
Score difference with first non-orthologous sequence - P.chabaudi:138 P.jiroveci:138

Q4Y1K6              	100.00%		L0P9N4              	100.00%
Bootstrap support for Q4Y1K6 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #359. Best score 137 bits
Score difference with first non-orthologous sequence - P.chabaudi:137 P.jiroveci:137

Q4Y0R8              	100.00%		L0P9I5              	100.00%
Bootstrap support for Q4Y0R8 as seed ortholog is 100%.
Bootstrap support for L0P9I5 as seed ortholog is 100%.

Group of orthologs #360. Best score 137 bits
Score difference with first non-orthologous sequence - P.chabaudi:137 P.jiroveci:137

Q4XXP6              	100.00%		L0PFQ3              	100.00%
Bootstrap support for Q4XXP6 as seed ortholog is 100%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #361. Best score 136 bits
Score difference with first non-orthologous sequence - P.chabaudi:136 P.jiroveci:136

Q4XYL8              	100.00%		L0PES4              	100.00%
Bootstrap support for Q4XYL8 as seed ortholog is 100%.
Bootstrap support for L0PES4 as seed ortholog is 100%.

Group of orthologs #362. Best score 136 bits
Score difference with first non-orthologous sequence - P.chabaudi:136 P.jiroveci:136

Q4Y871              	100.00%		L0PAJ5              	100.00%
Bootstrap support for Q4Y871 as seed ortholog is 100%.
Bootstrap support for L0PAJ5 as seed ortholog is 100%.

Group of orthologs #363. Best score 135 bits
Score difference with first non-orthologous sequence - P.chabaudi:135 P.jiroveci:135

Q4XV54              	100.00%		L0PFY9              	100.00%
Bootstrap support for Q4XV54 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #364. Best score 135 bits
Score difference with first non-orthologous sequence - P.chabaudi:135 P.jiroveci:135

Q4Y7F8              	100.00%		L0P9R7              	100.00%
Bootstrap support for Q4Y7F8 as seed ortholog is 100%.
Bootstrap support for L0P9R7 as seed ortholog is 100%.

Group of orthologs #365. Best score 134 bits
Score difference with first non-orthologous sequence - P.chabaudi:41 P.jiroveci:134

Q4XN90              	100.00%		L0PF33              	100.00%
Bootstrap support for Q4XN90 as seed ortholog is 93%.
Bootstrap support for L0PF33 as seed ortholog is 100%.

Group of orthologs #366. Best score 133 bits
Score difference with first non-orthologous sequence - P.chabaudi:133 P.jiroveci:133

Q4XQG2              	100.00%		L0PBX2              	100.00%
Bootstrap support for Q4XQG2 as seed ortholog is 100%.
Bootstrap support for L0PBX2 as seed ortholog is 100%.

Group of orthologs #367. Best score 132 bits
Score difference with first non-orthologous sequence - P.chabaudi:132 P.jiroveci:132

Q4XMQ4              	100.00%		L0PBC7              	100.00%
Bootstrap support for Q4XMQ4 as seed ortholog is 100%.
Bootstrap support for L0PBC7 as seed ortholog is 100%.

Group of orthologs #368. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.jiroveci:131

Q4XN40              	100.00%		L0PF71              	100.00%
Bootstrap support for Q4XN40 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #369. Best score 131 bits
Score difference with first non-orthologous sequence - P.chabaudi:131 P.jiroveci:131

Q4XUB1              	100.00%		L0PFH7              	100.00%
Bootstrap support for Q4XUB1 as seed ortholog is 100%.
Bootstrap support for L0PFH7 as seed ortholog is 100%.

Group of orthologs #370. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:25 P.jiroveci:15

Q4XWG1              	100.00%		L0PDA0              	100.00%
Q4XJR3              	38.89%		
Bootstrap support for Q4XWG1 as seed ortholog is 75%.
Bootstrap support for L0PDA0 as seed ortholog is 76%.

Group of orthologs #371. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:4 P.jiroveci:35

Q4X2E6              	100.00%		L0PAP9              	100.00%
Bootstrap support for Q4X2E6 as seed ortholog is 56%.
Alternative seed ortholog is Q4Y0G5 (4 bits away from this cluster)
Bootstrap support for L0PAP9 as seed ortholog is 99%.

Group of orthologs #372. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.jiroveci:130

Q4Y3U2              	100.00%		L0P723              	100.00%
Bootstrap support for Q4Y3U2 as seed ortholog is 100%.
Bootstrap support for L0P723 as seed ortholog is 100%.

Group of orthologs #373. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.jiroveci:82

Q4Y4H9              	100.00%		L0PAW4              	100.00%
Bootstrap support for Q4Y4H9 as seed ortholog is 100%.
Bootstrap support for L0PAW4 as seed ortholog is 99%.

Group of orthologs #374. Best score 130 bits
Score difference with first non-orthologous sequence - P.chabaudi:130 P.jiroveci:130

Q4Y5S2              	100.00%		L0PFW9              	100.00%
Bootstrap support for Q4Y5S2 as seed ortholog is 100%.
Bootstrap support for L0PFW9 as seed ortholog is 100%.

Group of orthologs #375. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.jiroveci:129

Q4XGR0              	100.00%		L0PHN0              	100.00%
Q4XV24              	33.01%		
Bootstrap support for Q4XGR0 as seed ortholog is 100%.
Bootstrap support for L0PHN0 as seed ortholog is 100%.

Group of orthologs #376. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:129 P.jiroveci:129

Q4XNI7              	100.00%		L0PD44              	100.00%
Q4X9L1              	53.14%		
Bootstrap support for Q4XNI7 as seed ortholog is 100%.
Bootstrap support for L0PD44 as seed ortholog is 100%.

Group of orthologs #377. Best score 129 bits
Score difference with first non-orthologous sequence - P.chabaudi:18 P.jiroveci:129

Q4X8W6              	100.00%		L0PD15              	100.00%
Bootstrap support for Q4X8W6 as seed ortholog is 73%.
Alternative seed ortholog is Q4XBZ1 (18 bits away from this cluster)
Bootstrap support for L0PD15 as seed ortholog is 100%.

Group of orthologs #378. Best score 128 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.jiroveci:128

Q4XIW8              	100.00%		L0PGI6              	100.00%
Q4XNH6              	19.69%		L0PCK1              	96.23%
Bootstrap support for Q4XIW8 as seed ortholog is 94%.
Bootstrap support for L0PGI6 as seed ortholog is 100%.

Group of orthologs #379. Best score 128 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.jiroveci:41

Q4XS92              	100.00%		L0PGP9              	100.00%
Bootstrap support for Q4XS92 as seed ortholog is 100%.
Bootstrap support for L0PGP9 as seed ortholog is 92%.

Group of orthologs #380. Best score 128 bits
Score difference with first non-orthologous sequence - P.chabaudi:128 P.jiroveci:128

Q4Y1G5              	100.00%		L0PEX7              	100.00%
Bootstrap support for Q4Y1G5 as seed ortholog is 100%.
Bootstrap support for L0PEX7 as seed ortholog is 100%.

Group of orthologs #381. Best score 127 bits
Score difference with first non-orthologous sequence - P.chabaudi:127 P.jiroveci:127

Q4XIJ3              	100.00%		L0PBI9              	100.00%
Bootstrap support for Q4XIJ3 as seed ortholog is 100%.
Bootstrap support for L0PBI9 as seed ortholog is 100%.

Group of orthologs #382. Best score 127 bits
Score difference with first non-orthologous sequence - P.chabaudi:127 P.jiroveci:127

Q4Y440              	100.00%		L0PEI9              	100.00%
Bootstrap support for Q4Y440 as seed ortholog is 100%.
Bootstrap support for L0PEI9 as seed ortholog is 100%.

Group of orthologs #383. Best score 126 bits
Score difference with first non-orthologous sequence - P.chabaudi:126 P.jiroveci:126

Q4X4D3              	100.00%		L0PC96              	100.00%
Bootstrap support for Q4X4D3 as seed ortholog is 100%.
Bootstrap support for L0PC96 as seed ortholog is 100%.

Group of orthologs #384. Best score 126 bits
Score difference with first non-orthologous sequence - P.chabaudi:126 P.jiroveci:126

Q4Y2D4              	100.00%		L0P8C9              	100.00%
Bootstrap support for Q4Y2D4 as seed ortholog is 100%.
Bootstrap support for L0P8C9 as seed ortholog is 100%.

Group of orthologs #385. Best score 126 bits
Score difference with first non-orthologous sequence - P.chabaudi:126 P.jiroveci:80

Q4XWR8              	100.00%		L0PE97              	100.00%
Bootstrap support for Q4XWR8 as seed ortholog is 100%.
Bootstrap support for L0PE97 as seed ortholog is 98%.

Group of orthologs #386. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.jiroveci:55

Q4XVP9              	100.00%		L0PA51              	100.00%
Bootstrap support for Q4XVP9 as seed ortholog is 100%.
Bootstrap support for L0PA51 as seed ortholog is 98%.

Group of orthologs #387. Best score 124 bits
Score difference with first non-orthologous sequence - P.chabaudi:124 P.jiroveci:124

Q4Y4B7              	100.00%		L0PF44              	100.00%
Bootstrap support for Q4Y4B7 as seed ortholog is 100%.
Bootstrap support for L0PF44 as seed ortholog is 100%.

Group of orthologs #388. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.jiroveci:123

Q4XWB7              	100.00%		L0P8T9              	100.00%
Q4XI79              	56.11%		
Bootstrap support for Q4XWB7 as seed ortholog is 100%.
Bootstrap support for L0P8T9 as seed ortholog is 100%.

Group of orthologs #389. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.jiroveci:123

Q4XDG5              	100.00%		L0P7Z9              	100.00%
Bootstrap support for Q4XDG5 as seed ortholog is 100%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #390. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.jiroveci:123

Q4XYS2              	100.00%		L0P9U1              	100.00%
Bootstrap support for Q4XYS2 as seed ortholog is 100%.
Bootstrap support for L0P9U1 as seed ortholog is 100%.

Group of orthologs #391. Best score 123 bits
Score difference with first non-orthologous sequence - P.chabaudi:123 P.jiroveci:123

Q4Y8H1              	100.00%		L0PFW7              	100.00%
Bootstrap support for Q4Y8H1 as seed ortholog is 100%.
Bootstrap support for L0PFW7 as seed ortholog is 100%.

Group of orthologs #392. Best score 122 bits
Score difference with first non-orthologous sequence - P.chabaudi:122 P.jiroveci:122

Q4Y8U6              	100.00%		L0PAH2              	100.00%
Bootstrap support for Q4Y8U6 as seed ortholog is 100%.
Bootstrap support for L0PAH2 as seed ortholog is 100%.

Group of orthologs #393. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:121 P.jiroveci:121

Q4XNI6              	100.00%		L0PEG0              	100.00%
Bootstrap support for Q4XNI6 as seed ortholog is 100%.
Bootstrap support for L0PEG0 as seed ortholog is 100%.

Group of orthologs #394. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.jiroveci:34

Q4XPT4              	100.00%		L0PDE1              	100.00%
Bootstrap support for Q4XPT4 as seed ortholog is 97%.
Bootstrap support for L0PDE1 as seed ortholog is 84%.

Group of orthologs #395. Best score 121 bits
Score difference with first non-orthologous sequence - P.chabaudi:41 P.jiroveci:121

Q4Y919              	100.00%		L0P949              	100.00%
Bootstrap support for Q4Y919 as seed ortholog is 93%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #396. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.jiroveci:120

Q4XF37              	100.00%		L0P9M3              	100.00%
Bootstrap support for Q4XF37 as seed ortholog is 100%.
Bootstrap support for L0P9M3 as seed ortholog is 100%.

Group of orthologs #397. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.jiroveci:120

Q4XPW6              	100.00%		L0P8R4              	100.00%
Bootstrap support for Q4XPW6 as seed ortholog is 100%.
Bootstrap support for L0P8R4 as seed ortholog is 100%.

Group of orthologs #398. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.jiroveci:120

Q4XMA9              	100.00%		L0PD86              	100.00%
Bootstrap support for Q4XMA9 as seed ortholog is 100%.
Bootstrap support for L0PD86 as seed ortholog is 100%.

Group of orthologs #399. Best score 120 bits
Score difference with first non-orthologous sequence - P.chabaudi:120 P.jiroveci:120

Q4XSH5              	100.00%		L0PAT7              	100.00%
Bootstrap support for Q4XSH5 as seed ortholog is 100%.
Bootstrap support for L0PAT7 as seed ortholog is 100%.

Group of orthologs #400. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.jiroveci:119

Q4XQI9              	100.00%		L0PBQ1              	100.00%
Bootstrap support for Q4XQI9 as seed ortholog is 100%.
Bootstrap support for L0PBQ1 as seed ortholog is 100%.

Group of orthologs #401. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.jiroveci:119

Q4XVP8              	100.00%		L0PGK0              	100.00%
Bootstrap support for Q4XVP8 as seed ortholog is 100%.
Bootstrap support for L0PGK0 as seed ortholog is 100%.

Group of orthologs #402. Best score 119 bits
Score difference with first non-orthologous sequence - P.chabaudi:119 P.jiroveci:119

Q4Y066              	100.00%		L0PHT7              	100.00%
Bootstrap support for Q4Y066 as seed ortholog is 100%.
Bootstrap support for L0PHT7 as seed ortholog is 100%.

Group of orthologs #403. Best score 118 bits
Score difference with first non-orthologous sequence - P.chabaudi:36 P.jiroveci:118

Q4XTU7              	100.00%		L0PHH9              	100.00%
                    	       		L0PA17              	17.87%
Bootstrap support for Q4XTU7 as seed ortholog is 93%.
Bootstrap support for L0PHH9 as seed ortholog is 100%.

Group of orthologs #404. Best score 118 bits
Score difference with first non-orthologous sequence - P.chabaudi:118 P.jiroveci:118

Q4X2I7              	100.00%		L0PE03              	100.00%
Bootstrap support for Q4X2I7 as seed ortholog is 100%.
Bootstrap support for L0PE03 as seed ortholog is 100%.

Group of orthologs #405. Best score 118 bits
Score difference with first non-orthologous sequence - P.chabaudi:118 P.jiroveci:118

Q4X8Q1              	100.00%		L0PBJ0              	100.00%
Bootstrap support for Q4X8Q1 as seed ortholog is 100%.
Bootstrap support for L0PBJ0 as seed ortholog is 100%.

Group of orthologs #406. Best score 118 bits
Score difference with first non-orthologous sequence - P.chabaudi:118 P.jiroveci:118

Q4XXC0              	100.00%		L0PDP9              	100.00%
Bootstrap support for Q4XXC0 as seed ortholog is 100%.
Bootstrap support for L0PDP9 as seed ortholog is 100%.

Group of orthologs #407. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.jiroveci:116

Q4XZ68              	100.00%		L0PFR9              	100.00%
Q4X8B1              	36.17%		
Bootstrap support for Q4XZ68 as seed ortholog is 100%.
Bootstrap support for L0PFR9 as seed ortholog is 100%.

Group of orthologs #408. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:116

Q4Y495              	100.00%		L0P839              	100.00%
Bootstrap support for Q4Y495 as seed ortholog is 92%.
Bootstrap support for L0P839 as seed ortholog is 100%.

Group of orthologs #409. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.jiroveci:116

Q4Y0B2              	100.00%		L0PEV6              	100.00%
Bootstrap support for Q4Y0B2 as seed ortholog is 100%.
Bootstrap support for L0PEV6 as seed ortholog is 100%.

Group of orthologs #410. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.jiroveci:116

Q4Y161              	100.00%		L0PGY5              	100.00%
Bootstrap support for Q4Y161 as seed ortholog is 100%.
Bootstrap support for L0PGY5 as seed ortholog is 100%.

Group of orthologs #411. Best score 116 bits
Score difference with first non-orthologous sequence - P.chabaudi:116 P.jiroveci:116

Q4Y724              	100.00%		L0PGD6              	100.00%
Bootstrap support for Q4Y724 as seed ortholog is 100%.
Bootstrap support for L0PGD6 as seed ortholog is 100%.

Group of orthologs #412. Best score 115 bits
Score difference with first non-orthologous sequence - P.chabaudi:115 P.jiroveci:115

Q4XFJ8              	100.00%		L0P9X0              	100.00%
Bootstrap support for Q4XFJ8 as seed ortholog is 100%.
Bootstrap support for L0P9X0 as seed ortholog is 100%.

Group of orthologs #413. Best score 115 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.jiroveci:23

Q4Y4W7              	100.00%		L0PDR6              	100.00%
Bootstrap support for Q4Y4W7 as seed ortholog is 92%.
Bootstrap support for L0PDR6 as seed ortholog is 71%.
Alternative seed ortholog is L0PCQ6 (23 bits away from this cluster)

Group of orthologs #414. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:114 P.jiroveci:114

Q4XME6              	100.00%		L0PD11              	100.00%
Bootstrap support for Q4XME6 as seed ortholog is 100%.
Bootstrap support for L0PD11 as seed ortholog is 100%.

Group of orthologs #415. Best score 114 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.jiroveci:114

Q4XQV9              	100.00%		L0PFK0              	100.00%
Bootstrap support for Q4XQV9 as seed ortholog is 96%.
Bootstrap support for L0PFK0 as seed ortholog is 100%.

Group of orthologs #416. Best score 113 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.jiroveci:55

Q4XHZ1              	100.00%		L0P9T6              	100.00%
Bootstrap support for Q4XHZ1 as seed ortholog is 100%.
Bootstrap support for L0P9T6 as seed ortholog is 99%.

Group of orthologs #417. Best score 113 bits
Score difference with first non-orthologous sequence - P.chabaudi:113 P.jiroveci:113

Q4Y7X0              	100.00%		L0PG43              	100.00%
Bootstrap support for Q4Y7X0 as seed ortholog is 100%.
Bootstrap support for L0PG43 as seed ortholog is 100%.

Group of orthologs #418. Best score 111 bits
Score difference with first non-orthologous sequence - P.chabaudi:111 P.jiroveci:49

Q4XTQ7              	100.00%		L0PC80              	100.00%
Q4XHB1              	42.11%		
Bootstrap support for Q4XTQ7 as seed ortholog is 100%.
Bootstrap support for L0PC80 as seed ortholog is 97%.

Group of orthologs #419. Best score 110 bits
Score difference with first non-orthologous sequence - P.chabaudi:110 P.jiroveci:110

Q4XJY3              	100.00%		L0PDL2              	100.00%
Q4XVL1              	100.00%		
Bootstrap support for Q4XJY3 as seed ortholog is 100%.
Bootstrap support for Q4XVL1 as seed ortholog is 100%.
Bootstrap support for L0PDL2 as seed ortholog is 100%.

Group of orthologs #420. Best score 110 bits
Score difference with first non-orthologous sequence - P.chabaudi:110 P.jiroveci:110

Q4XY65              	100.00%		L0PAB3              	100.00%
Bootstrap support for Q4XY65 as seed ortholog is 100%.
Bootstrap support for L0PAB3 as seed ortholog is 100%.

Group of orthologs #421. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.jiroveci:109

Q4XTG1              	100.00%		L0PA55              	100.00%
Bootstrap support for Q4XTG1 as seed ortholog is 100%.
Bootstrap support for L0PA55 as seed ortholog is 100%.

Group of orthologs #422. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.jiroveci:109

Q4XWB6              	100.00%		L0P9F5              	100.00%
Bootstrap support for Q4XWB6 as seed ortholog is 100%.
Bootstrap support for L0P9F5 as seed ortholog is 100%.

Group of orthologs #423. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.jiroveci:59

Q4XYI0              	100.00%		L0P9W6              	100.00%
Bootstrap support for Q4XYI0 as seed ortholog is 100%.
Bootstrap support for L0P9W6 as seed ortholog is 99%.

Group of orthologs #424. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.jiroveci:109

Q4XW75              	100.00%		L0PG87              	100.00%
Bootstrap support for Q4XW75 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #425. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.jiroveci:109

Q4Y366              	100.00%		L0PDN4              	100.00%
Bootstrap support for Q4Y366 as seed ortholog is 100%.
Bootstrap support for L0PDN4 as seed ortholog is 100%.

Group of orthologs #426. Best score 109 bits
Score difference with first non-orthologous sequence - P.chabaudi:109 P.jiroveci:109

Q4Y6B8              	100.00%		L0PAY4              	100.00%
Bootstrap support for Q4Y6B8 as seed ortholog is 100%.
Bootstrap support for L0PAY4 as seed ortholog is 100%.

Group of orthologs #427. Best score 108 bits
Score difference with first non-orthologous sequence - P.chabaudi:10 P.jiroveci:108

Q4XIF7              	100.00%		L0PEZ4              	100.00%
Q4XWA6              	52.73%		
Bootstrap support for Q4XIF7 as seed ortholog is 62%.
Alternative seed ortholog is Q4Y288 (10 bits away from this cluster)
Bootstrap support for L0PEZ4 as seed ortholog is 100%.

Group of orthologs #428. Best score 108 bits
Score difference with first non-orthologous sequence - P.chabaudi:37 P.jiroveci:38

Q4Y3H7              	100.00%		L0PD63              	100.00%
Bootstrap support for Q4Y3H7 as seed ortholog is 96%.
Bootstrap support for L0PD63 as seed ortholog is 98%.

Group of orthologs #429. Best score 107 bits
Score difference with first non-orthologous sequence - P.chabaudi:107 P.jiroveci:107

Q4X2V1              	100.00%		L0P7S0              	100.00%
Q4X6K7              	48.61%		
Bootstrap support for Q4X2V1 as seed ortholog is 100%.
Bootstrap support for L0P7S0 as seed ortholog is 100%.

Group of orthologs #430. Best score 107 bits
Score difference with first non-orthologous sequence - P.chabaudi:107 P.jiroveci:107

Q4XYW8              	100.00%		L0P9G7              	100.00%
Bootstrap support for Q4XYW8 as seed ortholog is 100%.
Bootstrap support for L0P9G7 as seed ortholog is 100%.

Group of orthologs #431. Best score 107 bits
Score difference with first non-orthologous sequence - P.chabaudi:107 P.jiroveci:107

Q4XYQ1              	100.00%		L0PFY6              	100.00%
Bootstrap support for Q4XYQ1 as seed ortholog is 100%.
Bootstrap support for L0PFY6 as seed ortholog is 100%.

Group of orthologs #432. Best score 106 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.jiroveci:106

Q4XGE9              	100.00%		L0PFD7              	100.00%
Q4Y0Z3              	80.65%		
Bootstrap support for Q4XGE9 as seed ortholog is 100%.
Bootstrap support for L0PFD7 as seed ortholog is 100%.

Group of orthologs #433. Best score 106 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.jiroveci:106

Q4XXA8              	100.00%		L0PAG8              	100.00%
Bootstrap support for Q4XXA8 as seed ortholog is 100%.
Bootstrap support for L0PAG8 as seed ortholog is 100%.

Group of orthologs #434. Best score 106 bits
Score difference with first non-orthologous sequence - P.chabaudi:106 P.jiroveci:106

Q4Y478              	100.00%		L0P903              	100.00%
Bootstrap support for Q4Y478 as seed ortholog is 100%.
Bootstrap support for L0P903 as seed ortholog is 100%.

Group of orthologs #435. Best score 105 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.jiroveci:105

Q4Y1I9              	100.00%		L0PA90              	100.00%
Bootstrap support for Q4Y1I9 as seed ortholog is 100%.
Bootstrap support for L0PA90 as seed ortholog is 100%.

Group of orthologs #436. Best score 105 bits
Score difference with first non-orthologous sequence - P.chabaudi:105 P.jiroveci:105

Q4Y487              	100.00%		L0PCG3              	100.00%
Bootstrap support for Q4Y487 as seed ortholog is 100%.
Bootstrap support for L0PCG3 as seed ortholog is 100%.

Group of orthologs #437. Best score 104 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.jiroveci:104

Q4XEK7              	100.00%		L0PAI2              	100.00%
Q4XCP3              	7.51%		
Bootstrap support for Q4XEK7 as seed ortholog is 100%.
Bootstrap support for L0PAI2 as seed ortholog is 100%.

Group of orthologs #438. Best score 104 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.jiroveci:104

Q4XDL9              	100.00%		L0PE37              	100.00%
Bootstrap support for Q4XDL9 as seed ortholog is 100%.
Bootstrap support for L0PE37 as seed ortholog is 100%.

Group of orthologs #439. Best score 104 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.jiroveci:104

Q4XLV6              	100.00%		L0P8R8              	100.00%
Bootstrap support for Q4XLV6 as seed ortholog is 100%.
Bootstrap support for L0P8R8 as seed ortholog is 100%.

Group of orthologs #440. Best score 104 bits
Score difference with first non-orthologous sequence - P.chabaudi:104 P.jiroveci:104

Q4XNN5              	100.00%		L0PHP6              	100.00%
Bootstrap support for Q4XNN5 as seed ortholog is 100%.
Bootstrap support for L0PHP6 as seed ortholog is 100%.

Group of orthologs #441. Best score 103 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.jiroveci:103

Q4X6T2              	100.00%		L0PCN2              	100.00%
Bootstrap support for Q4X6T2 as seed ortholog is 100%.
Bootstrap support for L0PCN2 as seed ortholog is 100%.

Group of orthologs #442. Best score 103 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.jiroveci:103

Q4XUJ4              	100.00%		L0PG13              	100.00%
Bootstrap support for Q4XUJ4 as seed ortholog is 100%.
Bootstrap support for L0PG13 as seed ortholog is 100%.

Group of orthologs #443. Best score 103 bits
Score difference with first non-orthologous sequence - P.chabaudi:103 P.jiroveci:103

Q4Y0U0              	100.00%		L0PC68              	100.00%
Bootstrap support for Q4Y0U0 as seed ortholog is 100%.
Bootstrap support for L0PC68 as seed ortholog is 100%.

Group of orthologs #444. Best score 103 bits
Score difference with first non-orthologous sequence - P.chabaudi:20 P.jiroveci:103

Q4XWH8              	100.00%		L0PGW6              	100.00%
Bootstrap support for Q4XWH8 as seed ortholog is 72%.
Alternative seed ortholog is Q4XEG7 (20 bits away from this cluster)
Bootstrap support for L0PGW6 as seed ortholog is 100%.

Group of orthologs #445. Best score 102 bits
Score difference with first non-orthologous sequence - P.chabaudi:102 P.jiroveci:102

Q4X4Q9              	100.00%		L0PCY9              	100.00%
Bootstrap support for Q4X4Q9 as seed ortholog is 100%.
Bootstrap support for L0PCY9 as seed ortholog is 100%.

Group of orthologs #446. Best score 102 bits
Score difference with first non-orthologous sequence - P.chabaudi:102 P.jiroveci:102

Q4XKN6              	100.00%		L0P8H6              	100.00%
Bootstrap support for Q4XKN6 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #447. Best score 102 bits
Score difference with first non-orthologous sequence - P.chabaudi:102 P.jiroveci:102

Q4XTH0              	100.00%		L0PDL1              	100.00%
Bootstrap support for Q4XTH0 as seed ortholog is 100%.
Bootstrap support for L0PDL1 as seed ortholog is 100%.

Group of orthologs #448. Best score 102 bits
Score difference with first non-orthologous sequence - P.chabaudi:102 P.jiroveci:102

Q4Y429              	100.00%		L0PF38              	100.00%
Bootstrap support for Q4Y429 as seed ortholog is 100%.
Bootstrap support for L0PF38 as seed ortholog is 100%.

Group of orthologs #449. Best score 101 bits
Score difference with first non-orthologous sequence - P.chabaudi:18 P.jiroveci:101

Q4XGU5              	100.00%		L0PFV4              	100.00%
Q4XZK0              	100.00%		
Bootstrap support for Q4XGU5 as seed ortholog is 83%.
Bootstrap support for Q4XZK0 as seed ortholog is 82%.
Bootstrap support for L0PFV4 as seed ortholog is 100%.

Group of orthologs #450. Best score 101 bits
Score difference with first non-orthologous sequence - P.chabaudi:101 P.jiroveci:101

Q4Y1S6              	100.00%		L0PAC4              	100.00%
                    	       		L0P871              	98.52%
Bootstrap support for Q4Y1S6 as seed ortholog is 100%.
Bootstrap support for L0PAC4 as seed ortholog is 100%.

Group of orthologs #451. Best score 101 bits
Score difference with first non-orthologous sequence - P.chabaudi:101 P.jiroveci:101

Q4XQ49              	100.00%		L0P870              	100.00%
Bootstrap support for Q4XQ49 as seed ortholog is 100%.
Bootstrap support for L0P870 as seed ortholog is 100%.

Group of orthologs #452. Best score 100 bits
Score difference with first non-orthologous sequence - P.chabaudi:100 P.jiroveci:100

Q4XUC9              	100.00%		L0PE13              	100.00%
Q4X8E8              	64.92%		
Bootstrap support for Q4XUC9 as seed ortholog is 100%.
Bootstrap support for L0PE13 as seed ortholog is 100%.

Group of orthologs #453. Best score 100 bits
Score difference with first non-orthologous sequence - P.chabaudi:100 P.jiroveci:100

Q4Y016              	100.00%		L0PBA3              	100.00%
Q4XD69              	45.29%		
Bootstrap support for Q4Y016 as seed ortholog is 100%.
Bootstrap support for L0PBA3 as seed ortholog is 100%.

Group of orthologs #454. Best score 99 bits
Score difference with first non-orthologous sequence - P.chabaudi:99 P.jiroveci:48

Q4X547              	100.00%		L0PAD3              	100.00%
Bootstrap support for Q4X547 as seed ortholog is 100%.
Bootstrap support for L0PAD3 as seed ortholog is 93%.

Group of orthologs #455. Best score 99 bits
Score difference with first non-orthologous sequence - P.chabaudi:99 P.jiroveci:99

Q4XZG0              	100.00%		L0PDW9              	100.00%
Bootstrap support for Q4XZG0 as seed ortholog is 100%.
Bootstrap support for L0PDW9 as seed ortholog is 100%.

Group of orthologs #456. Best score 99 bits
Score difference with first non-orthologous sequence - P.chabaudi:99 P.jiroveci:99

Q4Y564              	100.00%		L0P7Y4              	100.00%
Bootstrap support for Q4Y564 as seed ortholog is 100%.
Bootstrap support for L0P7Y4 as seed ortholog is 100%.

Group of orthologs #457. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.jiroveci:98

Q4XYQ9              	100.00%		L0PAZ1              	100.00%
Bootstrap support for Q4XYQ9 as seed ortholog is 100%.
Bootstrap support for L0PAZ1 as seed ortholog is 100%.

Group of orthologs #458. Best score 98 bits
Score difference with first non-orthologous sequence - P.chabaudi:98 P.jiroveci:98

Q4Y3R9              	100.00%		L0P8G3              	100.00%
Bootstrap support for Q4Y3R9 as seed ortholog is 100%.
Bootstrap support for L0P8G3 as seed ortholog is 100%.

Group of orthologs #459. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:97 P.jiroveci:97

Q4Y5T0              	100.00%		L0PAA3              	100.00%
Q4XEW4              	47.99%		
Bootstrap support for Q4Y5T0 as seed ortholog is 100%.
Bootstrap support for L0PAA3 as seed ortholog is 100%.

Group of orthologs #460. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:97 P.jiroveci:97

Q4X329              	100.00%		L0PF58              	100.00%
Bootstrap support for Q4X329 as seed ortholog is 100%.
Bootstrap support for L0PF58 as seed ortholog is 100%.

Group of orthologs #461. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:97 P.jiroveci:97

Q4XYC4              	100.00%		L0P9Z6              	100.00%
Bootstrap support for Q4XYC4 as seed ortholog is 100%.
Bootstrap support for L0P9Z6 as seed ortholog is 100%.

Group of orthologs #462. Best score 97 bits
Score difference with first non-orthologous sequence - P.chabaudi:97 P.jiroveci:97

Q4Y471              	100.00%		L0PG38              	100.00%
Bootstrap support for Q4Y471 as seed ortholog is 100%.
Bootstrap support for L0PG38 as seed ortholog is 100%.

Group of orthologs #463. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.jiroveci:96

Q4XPG6              	100.00%		L0P733              	100.00%
Bootstrap support for Q4XPG6 as seed ortholog is 100%.
Bootstrap support for L0P733 as seed ortholog is 100%.

Group of orthologs #464. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.jiroveci:96

Q4XVK1              	100.00%		L0P8R5              	100.00%
Bootstrap support for Q4XVK1 as seed ortholog is 100%.
Bootstrap support for L0P8R5 as seed ortholog is 100%.

Group of orthologs #465. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.jiroveci:96

Q4XRC1              	100.00%		L0PEM3              	100.00%
Bootstrap support for Q4XRC1 as seed ortholog is 100%.
Bootstrap support for L0PEM3 as seed ortholog is 100%.

Group of orthologs #466. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:30 P.jiroveci:96

Q4XWL1              	100.00%		L0PAZ8              	100.00%
Bootstrap support for Q4XWL1 as seed ortholog is 87%.
Bootstrap support for L0PAZ8 as seed ortholog is 100%.

Group of orthologs #467. Best score 96 bits
Score difference with first non-orthologous sequence - P.chabaudi:96 P.jiroveci:96

Q4XWF1              	100.00%		L0PC06              	100.00%
Bootstrap support for Q4XWF1 as seed ortholog is 100%.
Bootstrap support for L0PC06 as seed ortholog is 100%.

Group of orthologs #468. Best score 95 bits
Score difference with first non-orthologous sequence - P.chabaudi:95 P.jiroveci:95

Q4XK10              	100.00%		L0PEV4              	100.00%
Bootstrap support for Q4XK10 as seed ortholog is 100%.
Bootstrap support for L0PEV4 as seed ortholog is 100%.

Group of orthologs #469. Best score 95 bits
Score difference with first non-orthologous sequence - P.chabaudi:95 P.jiroveci:95

Q4Y2H8              	100.00%		L0PD00              	100.00%
Bootstrap support for Q4Y2H8 as seed ortholog is 100%.
Bootstrap support for L0PD00 as seed ortholog is 100%.

Group of orthologs #470. Best score 95 bits
Score difference with first non-orthologous sequence - P.chabaudi:3 P.jiroveci:52

Q4Y845              	100.00%		L0P9Z5              	100.00%
Bootstrap support for Q4Y845 as seed ortholog is 54%.
Alternative seed ortholog is Q4XPB6 (3 bits away from this cluster)
Bootstrap support for L0P9Z5 as seed ortholog is 88%.

Group of orthologs #471. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4XED3              	100.00%		L0PA27              	100.00%
Q4XM75              	74.09%		
Bootstrap support for Q4XED3 as seed ortholog is 100%.
Bootstrap support for L0PA27 as seed ortholog is 100%.

Group of orthologs #472. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4XN28              	100.00%		L0PAV2              	100.00%
Bootstrap support for Q4XN28 as seed ortholog is 100%.
Bootstrap support for L0PAV2 as seed ortholog is 100%.

Group of orthologs #473. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4XQ40              	100.00%		L0PAT8              	100.00%
Bootstrap support for Q4XQ40 as seed ortholog is 100%.
Bootstrap support for L0PAT8 as seed ortholog is 100%.

Group of orthologs #474. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4XZM3              	100.00%		L0PCZ5              	100.00%
Bootstrap support for Q4XZM3 as seed ortholog is 100%.
Bootstrap support for L0PCZ5 as seed ortholog is 100%.

Group of orthologs #475. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4Y0W9              	100.00%		L0PCY2              	100.00%
Bootstrap support for Q4Y0W9 as seed ortholog is 100%.
Bootstrap support for L0PCY2 as seed ortholog is 100%.

Group of orthologs #476. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:42

Q4Y4J4              	100.00%		L0P9F2              	100.00%
Bootstrap support for Q4Y4J4 as seed ortholog is 100%.
Bootstrap support for L0P9F2 as seed ortholog is 93%.

Group of orthologs #477. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4Y472              	100.00%		L0PA28              	100.00%
Bootstrap support for Q4Y472 as seed ortholog is 100%.
Bootstrap support for L0PA28 as seed ortholog is 100%.

Group of orthologs #478. Best score 94 bits
Score difference with first non-orthologous sequence - P.chabaudi:94 P.jiroveci:94

Q4Y339              	100.00%		L0PDX6              	100.00%
Bootstrap support for Q4Y339 as seed ortholog is 100%.
Bootstrap support for L0PDX6 as seed ortholog is 100%.

Group of orthologs #479. Best score 93 bits
Score difference with first non-orthologous sequence - P.chabaudi:93 P.jiroveci:93

Q4XS77              	100.00%		L0P7A1              	100.00%
Bootstrap support for Q4XS77 as seed ortholog is 100%.
Bootstrap support for L0P7A1 as seed ortholog is 100%.

Group of orthologs #480. Best score 93 bits
Score difference with first non-orthologous sequence - P.chabaudi:93 P.jiroveci:93

Q4XZ09              	100.00%		L0PFA7              	100.00%
Bootstrap support for Q4XZ09 as seed ortholog is 100%.
Bootstrap support for L0PFA7 as seed ortholog is 100%.

Group of orthologs #481. Best score 93 bits
Score difference with first non-orthologous sequence - P.chabaudi:93 P.jiroveci:93

Q4Y4W2              	100.00%		L0PCC0              	100.00%
Bootstrap support for Q4Y4W2 as seed ortholog is 100%.
Bootstrap support for L0PCC0 as seed ortholog is 100%.

Group of orthologs #482. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.jiroveci:92

Q4XIT5              	100.00%		L0PA73              	100.00%
Q4XZB0              	57.28%		
Bootstrap support for Q4XIT5 as seed ortholog is 100%.
Bootstrap support for L0PA73 as seed ortholog is 100%.

Group of orthologs #483. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.jiroveci:92

Q4XC39              	100.00%		L0PAN5              	100.00%
Bootstrap support for Q4XC39 as seed ortholog is 100%.
Bootstrap support for L0PAN5 as seed ortholog is 100%.

Group of orthologs #484. Best score 92 bits
Score difference with first non-orthologous sequence - P.chabaudi:92 P.jiroveci:92

Q4XQK0              	100.00%		L0PBK0              	100.00%
Bootstrap support for Q4XQK0 as seed ortholog is 100%.
Bootstrap support for L0PBK0 as seed ortholog is 100%.

Group of orthologs #485. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:91

Q4XLB6              	100.00%		L0PE43              	100.00%
Q4XJ15              	64.00%		
Bootstrap support for Q4XLB6 as seed ortholog is 100%.
Bootstrap support for L0PE43 as seed ortholog is 100%.

Group of orthologs #486. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:91

Q4X5A2              	100.00%		L0PBX9              	100.00%
Bootstrap support for Q4X5A2 as seed ortholog is 100%.
Bootstrap support for L0PBX9 as seed ortholog is 100%.

Group of orthologs #487. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:91

Q4XX80              	100.00%		L0PD37              	100.00%
Bootstrap support for Q4XX80 as seed ortholog is 100%.
Bootstrap support for L0PD37 as seed ortholog is 100%.

Group of orthologs #488. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:91

Q4XYB1              	100.00%		L0PCK8              	100.00%
Bootstrap support for Q4XYB1 as seed ortholog is 100%.
Bootstrap support for L0PCK8 as seed ortholog is 100%.

Group of orthologs #489. Best score 91 bits
Score difference with first non-orthologous sequence - P.chabaudi:91 P.jiroveci:91

Q4Y083              	100.00%		L0PDI9              	100.00%
Bootstrap support for Q4Y083 as seed ortholog is 100%.
Bootstrap support for L0PDI9 as seed ortholog is 100%.

Group of orthologs #490. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:1 P.jiroveci:5

Q4Y4F6              	100.00%		L0P9H7              	100.00%
Q4Y196              	6.67%		L0PB47              	20.37%
Bootstrap support for Q4Y4F6 as seed ortholog is 54%.
Alternative seed ortholog is Q4XFV5 (1 bits away from this cluster)
Bootstrap support for L0P9H7 as seed ortholog is 49%.
Alternative seed ortholog is L0P980 (5 bits away from this cluster)

Group of orthologs #491. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.jiroveci:90

Q4XEL9              	100.00%		L0P939              	100.00%
                    	       		L0PFG4              	89.47%
Bootstrap support for Q4XEL9 as seed ortholog is 100%.
Bootstrap support for L0P939 as seed ortholog is 100%.

Group of orthologs #492. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.jiroveci:90

Q4XFX0              	100.00%		L0PG73              	100.00%
Q4XY41              	55.19%		
Bootstrap support for Q4XFX0 as seed ortholog is 100%.
Bootstrap support for L0PG73 as seed ortholog is 100%.

Group of orthologs #493. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.jiroveci:90

Q4XQU7              	100.00%		L0P8S6              	100.00%
Q4XGH9              	7.87%		
Bootstrap support for Q4XQU7 as seed ortholog is 100%.
Bootstrap support for L0P8S6 as seed ortholog is 100%.

Group of orthologs #494. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.jiroveci:90

Q4XFL9              	100.00%		L0P8P7              	100.00%
Bootstrap support for Q4XFL9 as seed ortholog is 100%.
Bootstrap support for L0P8P7 as seed ortholog is 100%.

Group of orthologs #495. Best score 90 bits
Score difference with first non-orthologous sequence - P.chabaudi:90 P.jiroveci:9

Q4Y0L5              	100.00%		L0PFP6              	100.00%
Bootstrap support for Q4Y0L5 as seed ortholog is 100%.
Bootstrap support for L0PFP6 as seed ortholog is 75%.

Group of orthologs #496. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.jiroveci:32

Q4XIE7              	100.00%		L0P806              	100.00%
Bootstrap support for Q4XIE7 as seed ortholog is 100%.
Bootstrap support for L0P806 as seed ortholog is 99%.

Group of orthologs #497. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.jiroveci:89

Q4XSR6              	100.00%		L0PD74              	100.00%
Bootstrap support for Q4XSR6 as seed ortholog is 100%.
Bootstrap support for L0PD74 as seed ortholog is 100%.

Group of orthologs #498. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:89 P.jiroveci:89

Q4XVE1              	100.00%		L0PD96              	100.00%
Bootstrap support for Q4XVE1 as seed ortholog is 100%.
Bootstrap support for L0PD96 as seed ortholog is 100%.

Group of orthologs #499. Best score 89 bits
Score difference with first non-orthologous sequence - P.chabaudi:0 P.jiroveci:9

Q4Y7U5              	100.00%		L0PGL7              	100.00%
Bootstrap support for Q4Y7U5 as seed ortholog is 49%.
Alternative seed ortholog is Q4Y6E8 (0 bits away from this cluster)
Bootstrap support for L0PGL7 as seed ortholog is 61%.
Alternative seed ortholog is L0PCJ3 (9 bits away from this cluster)

Group of orthologs #500. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.jiroveci:87

Q4X9F3              	100.00%		L0P8A1              	100.00%
Q4Y0Y5              	100.00%		
Bootstrap support for Q4X9F3 as seed ortholog is 100%.
Bootstrap support for Q4Y0Y5 as seed ortholog is 100%.
Bootstrap support for L0P8A1 as seed ortholog is 100%.

Group of orthologs #501. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.jiroveci:87

Q4X2S3              	100.00%		L0PFC4              	100.00%
Bootstrap support for Q4X2S3 as seed ortholog is 100%.
Bootstrap support for L0PFC4 as seed ortholog is 100%.

Group of orthologs #502. Best score 87 bits
Score difference with first non-orthologous sequence - P.chabaudi:87 P.jiroveci:87

Q4XUN4              	100.00%		L0PFF8              	100.00%
Bootstrap support for Q4XUN4 as seed ortholog is 100%.
Bootstrap support for L0PFF8 as seed ortholog is 100%.

Group of orthologs #503. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.jiroveci:86

Q4XDY4              	100.00%		L0PDF7              	100.00%
Q4XM05              	93.09%		
Bootstrap support for Q4XDY4 as seed ortholog is 100%.
Bootstrap support for L0PDF7 as seed ortholog is 100%.

Group of orthologs #504. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.jiroveci:86

Q4Y8C2              	100.00%		L0PAU3              	100.00%
                    	       		L0PBF0              	22.58%
Bootstrap support for Q4Y8C2 as seed ortholog is 100%.
Bootstrap support for L0PAU3 as seed ortholog is 100%.

Group of orthologs #505. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:33 P.jiroveci:86

Q4XDU8              	100.00%		L0P948              	100.00%
Bootstrap support for Q4XDU8 as seed ortholog is 92%.
Bootstrap support for L0P948 as seed ortholog is 100%.

Group of orthologs #506. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.jiroveci:86

Q4XR15              	100.00%		L0P8G7              	100.00%
Bootstrap support for Q4XR15 as seed ortholog is 100%.
Bootstrap support for L0P8G7 as seed ortholog is 100%.

Group of orthologs #507. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.jiroveci:86

Q4XWQ4              	100.00%		L0PCZ2              	100.00%
Bootstrap support for Q4XWQ4 as seed ortholog is 100%.
Bootstrap support for L0PCZ2 as seed ortholog is 100%.

Group of orthologs #508. Best score 86 bits
Score difference with first non-orthologous sequence - P.chabaudi:86 P.jiroveci:86

Q4Y6N7              	100.00%		L0PF52              	100.00%
Bootstrap support for Q4Y6N7 as seed ortholog is 100%.
Bootstrap support for L0PF52 as seed ortholog is 100%.

Group of orthologs #509. Best score 85 bits
Score difference with first non-orthologous sequence - P.chabaudi:85 P.jiroveci:85

Q4XZW7              	100.00%		L0PBR1              	100.00%
Bootstrap support for Q4XZW7 as seed ortholog is 100%.
Bootstrap support for L0PBR1 as seed ortholog is 100%.

Group of orthologs #510. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:34 P.jiroveci:84

Q4XKV3              	100.00%		L0P9W7              	100.00%
Bootstrap support for Q4XKV3 as seed ortholog is 93%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #511. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.jiroveci:84

Q4XRN9              	100.00%		L0P8G4              	100.00%
Bootstrap support for Q4XRN9 as seed ortholog is 100%.
Bootstrap support for L0P8G4 as seed ortholog is 100%.

Group of orthologs #512. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.jiroveci:84

Q4XNG5              	100.00%		L0PG39              	100.00%
Bootstrap support for Q4XNG5 as seed ortholog is 100%.
Bootstrap support for L0PG39 as seed ortholog is 100%.

Group of orthologs #513. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.jiroveci:84

Q4XNK7              	100.00%		L0PG78              	100.00%
Bootstrap support for Q4XNK7 as seed ortholog is 100%.
Bootstrap support for L0PG78 as seed ortholog is 100%.

Group of orthologs #514. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.jiroveci:84

Q4XVD9              	100.00%		L0PAA1              	100.00%
Bootstrap support for Q4XVD9 as seed ortholog is 100%.
Bootstrap support for L0PAA1 as seed ortholog is 100%.

Group of orthologs #515. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.jiroveci:84

Q4XYK1              	100.00%		L0P6Z5              	100.00%
Bootstrap support for Q4XYK1 as seed ortholog is 100%.
Bootstrap support for L0P6Z5 as seed ortholog is 100%.

Group of orthologs #516. Best score 84 bits
Score difference with first non-orthologous sequence - P.chabaudi:84 P.jiroveci:84

Q4XYV2              	100.00%		L0PA07              	100.00%
Bootstrap support for Q4XYV2 as seed ortholog is 100%.
Bootstrap support for L0PA07 as seed ortholog is 100%.

Group of orthologs #517. Best score 82 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.jiroveci:82

Q4Y8R6              	100.00%		L0PFZ6              	100.00%
                    	       		L0P7L2              	96.83%
Bootstrap support for Q4Y8R6 as seed ortholog is 100%.
Bootstrap support for L0PFZ6 as seed ortholog is 100%.

Group of orthologs #518. Best score 82 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.jiroveci:82

Q4XRZ5              	100.00%		L0PGH8              	100.00%
Bootstrap support for Q4XRZ5 as seed ortholog is 100%.
Bootstrap support for L0PGH8 as seed ortholog is 100%.

Group of orthologs #519. Best score 82 bits
Score difference with first non-orthologous sequence - P.chabaudi:82 P.jiroveci:82

Q4Y079              	100.00%		L0P940              	100.00%
Bootstrap support for Q4Y079 as seed ortholog is 100%.
Bootstrap support for L0P940 as seed ortholog is 100%.

Group of orthologs #520. Best score 81 bits
Score difference with first non-orthologous sequence - P.chabaudi:81 P.jiroveci:81

Q4XYA2              	100.00%		L0PGR9              	100.00%
Bootstrap support for Q4XYA2 as seed ortholog is 100%.
Bootstrap support for L0PGR9 as seed ortholog is 100%.

Group of orthologs #521. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:80 P.jiroveci:9

Q4Y2M1              	100.00%		L0PD77              	100.00%
Q4X5K1              	23.56%		
Bootstrap support for Q4Y2M1 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 63%.
Alternative seed ortholog is L0PBW9 (9 bits away from this cluster)

Group of orthologs #522. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:80 P.jiroveci:80

Q4XHH5              	100.00%		L0PFT5              	100.00%
Bootstrap support for Q4XHH5 as seed ortholog is 100%.
Bootstrap support for L0PFT5 as seed ortholog is 100%.

Group of orthologs #523. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:80 P.jiroveci:80

Q4XM88              	100.00%		L0PBK8              	100.00%
Bootstrap support for Q4XM88 as seed ortholog is 100%.
Bootstrap support for L0PBK8 as seed ortholog is 100%.

Group of orthologs #524. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:80 P.jiroveci:80

Q4XR27              	100.00%		L0P938              	100.00%
Bootstrap support for Q4XR27 as seed ortholog is 100%.
Bootstrap support for L0P938 as seed ortholog is 100%.

Group of orthologs #525. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:80 P.jiroveci:80

Q4XWP4              	100.00%		L0P752              	100.00%
Bootstrap support for Q4XWP4 as seed ortholog is 100%.
Bootstrap support for L0P752 as seed ortholog is 100%.

Group of orthologs #526. Best score 80 bits
Score difference with first non-orthologous sequence - P.chabaudi:27 P.jiroveci:80

Q4XUC2              	100.00%		L0PFA1              	100.00%
Bootstrap support for Q4XUC2 as seed ortholog is 98%.
Bootstrap support for L0PFA1 as seed ortholog is 100%.

Group of orthologs #527. Best score 79 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.jiroveci:79

Q4XMC5              	100.00%		L0PGB6              	100.00%
                    	       		L0PG66              	86.90%
Bootstrap support for Q4XMC5 as seed ortholog is 100%.
Bootstrap support for L0PGB6 as seed ortholog is 100%.

Group of orthologs #528. Best score 79 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.jiroveci:79

Q4Y5P8              	100.00%		L0PD75              	100.00%
Q4XWG6              	5.17%		
Bootstrap support for Q4Y5P8 as seed ortholog is 100%.
Bootstrap support for L0PD75 as seed ortholog is 100%.

Group of orthologs #529. Best score 79 bits
Score difference with first non-orthologous sequence - P.chabaudi:79 P.jiroveci:79

Q4XQ64              	100.00%		L0PAB2              	100.00%
Bootstrap support for Q4XQ64 as seed ortholog is 100%.
Bootstrap support for L0PAB2 as seed ortholog is 100%.

Group of orthologs #530. Best score 78 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.jiroveci:78

Q4XRT6              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	68.68%
Bootstrap support for Q4XRT6 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #531. Best score 78 bits
Score difference with first non-orthologous sequence - P.chabaudi:78 P.jiroveci:78

Q4Y694              	100.00%		L0PCA7              	100.00%
Bootstrap support for Q4Y694 as seed ortholog is 100%.
Bootstrap support for L0PCA7 as seed ortholog is 100%.

Group of orthologs #532. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4XEE9              	100.00%		L0P6P6              	100.00%
Q4XP81              	33.62%		
Bootstrap support for Q4XEE9 as seed ortholog is 100%.
Bootstrap support for L0P6P6 as seed ortholog is 100%.

Group of orthologs #533. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4XG19              	100.00%		L0PCP9              	100.00%
Q4Y316              	92.71%		
Bootstrap support for Q4XG19 as seed ortholog is 100%.
Bootstrap support for L0PCP9 as seed ortholog is 100%.

Group of orthologs #534. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:20 P.jiroveci:15

Q4XM13              	100.00%		L0PEF8              	100.00%
Q4XL10              	11.40%		
Bootstrap support for Q4XM13 as seed ortholog is 73%.
Alternative seed ortholog is Q4XIR5 (20 bits away from this cluster)
Bootstrap support for L0PEF8 as seed ortholog is 62%.
Alternative seed ortholog is L0PDW2 (15 bits away from this cluster)

Group of orthologs #535. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4XGH5              	100.00%		L0PD60              	100.00%
Bootstrap support for Q4XGH5 as seed ortholog is 100%.
Bootstrap support for L0PD60 as seed ortholog is 100%.

Group of orthologs #536. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4XZ61              	100.00%		L0PA83              	100.00%
Bootstrap support for Q4XZ61 as seed ortholog is 100%.
Bootstrap support for L0PA83 as seed ortholog is 100%.

Group of orthologs #537. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4Y5I6              	100.00%		L0P7D7              	100.00%
Bootstrap support for Q4Y5I6 as seed ortholog is 100%.
Bootstrap support for L0P7D7 as seed ortholog is 100%.

Group of orthologs #538. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4XZC0              	100.00%		L0PF16              	100.00%
Bootstrap support for Q4XZC0 as seed ortholog is 100%.
Bootstrap support for L0PF16 as seed ortholog is 100%.

Group of orthologs #539. Best score 77 bits
Score difference with first non-orthologous sequence - P.chabaudi:77 P.jiroveci:77

Q4Y5X4              	100.00%		L0PEN4              	100.00%
Bootstrap support for Q4Y5X4 as seed ortholog is 100%.
Bootstrap support for L0PEN4 as seed ortholog is 100%.

Group of orthologs #540. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.jiroveci:76

Q4X2K5              	100.00%		L0PFF4              	100.00%
Bootstrap support for Q4X2K5 as seed ortholog is 100%.
Bootstrap support for L0PFF4 as seed ortholog is 100%.

Group of orthologs #541. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.jiroveci:76

Q4XMH3              	100.00%		L0P988              	100.00%
Bootstrap support for Q4XMH3 as seed ortholog is 100%.
Bootstrap support for L0P988 as seed ortholog is 100%.

Group of orthologs #542. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.jiroveci:76

Q4XPR5              	100.00%		L0PGC0              	100.00%
Bootstrap support for Q4XPR5 as seed ortholog is 100%.
Bootstrap support for L0PGC0 as seed ortholog is 100%.

Group of orthologs #543. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.jiroveci:76

Q4Y1V5              	100.00%		L0PFC0              	100.00%
Bootstrap support for Q4Y1V5 as seed ortholog is 100%.
Bootstrap support for L0PFC0 as seed ortholog is 100%.

Group of orthologs #544. Best score 76 bits
Score difference with first non-orthologous sequence - P.chabaudi:76 P.jiroveci:76

Q4Y6E0              	100.00%		L0PFK9              	100.00%
Bootstrap support for Q4Y6E0 as seed ortholog is 100%.
Bootstrap support for L0PFK9 as seed ortholog is 100%.

Group of orthologs #545. Best score 75 bits
Score difference with first non-orthologous sequence - P.chabaudi:75 P.jiroveci:75

Q4X848              	100.00%		L0PFF2              	100.00%
Bootstrap support for Q4X848 as seed ortholog is 100%.
Bootstrap support for L0PFF2 as seed ortholog is 100%.

Group of orthologs #546. Best score 75 bits
Score difference with first non-orthologous sequence - P.chabaudi:75 P.jiroveci:75

Q4XN23              	100.00%		L0PG28              	100.00%
Bootstrap support for Q4XN23 as seed ortholog is 100%.
Bootstrap support for L0PG28 as seed ortholog is 100%.

Group of orthologs #547. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4X393              	100.00%		L0PA97              	100.00%
Bootstrap support for Q4X393 as seed ortholog is 100%.
Bootstrap support for L0PA97 as seed ortholog is 100%.

Group of orthologs #548. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4X3I0              	100.00%		L0PEV3              	100.00%
Bootstrap support for Q4X3I0 as seed ortholog is 100%.
Bootstrap support for L0PEV3 as seed ortholog is 100%.

Group of orthologs #549. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4X5C5              	100.00%		L0PFC3              	100.00%
Bootstrap support for Q4X5C5 as seed ortholog is 100%.
Bootstrap support for L0PFC3 as seed ortholog is 100%.

Group of orthologs #550. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4XCI2              	100.00%		L0PC39              	100.00%
Bootstrap support for Q4XCI2 as seed ortholog is 100%.
Bootstrap support for L0PC39 as seed ortholog is 100%.

Group of orthologs #551. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4XTM7              	100.00%		L0P8R9              	100.00%
Bootstrap support for Q4XTM7 as seed ortholog is 100%.
Bootstrap support for L0P8R9 as seed ortholog is 100%.

Group of orthologs #552. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4XYV1              	100.00%		L0P834              	100.00%
Bootstrap support for Q4XYV1 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 100%.

Group of orthologs #553. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4XZT6              	100.00%		L0PE02              	100.00%
Bootstrap support for Q4XZT6 as seed ortholog is 100%.
Bootstrap support for L0PE02 as seed ortholog is 100%.

Group of orthologs #554. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4Y452              	100.00%		L0PAB8              	100.00%
Bootstrap support for Q4Y452 as seed ortholog is 100%.
Bootstrap support for L0PAB8 as seed ortholog is 100%.

Group of orthologs #555. Best score 74 bits
Score difference with first non-orthologous sequence - P.chabaudi:74 P.jiroveci:74

Q4Y0B3              	100.00%		L0PGF4              	100.00%
Bootstrap support for Q4Y0B3 as seed ortholog is 100%.
Bootstrap support for L0PGF4 as seed ortholog is 100%.

Group of orthologs #556. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:73 P.jiroveci:73

Q4XC29              	100.00%		L0PCQ3              	100.00%
Bootstrap support for Q4XC29 as seed ortholog is 100%.
Bootstrap support for L0PCQ3 as seed ortholog is 100%.

Group of orthologs #557. Best score 73 bits
Score difference with first non-orthologous sequence - P.chabaudi:73 P.jiroveci:73

Q4Y8E8              	100.00%		L0PB00              	100.00%
Bootstrap support for Q4Y8E8 as seed ortholog is 100%.
Bootstrap support for L0PB00 as seed ortholog is 100%.

Group of orthologs #558. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.jiroveci:72

Q4XMY5              	100.00%		L0P9A3              	100.00%
Bootstrap support for Q4XMY5 as seed ortholog is 100%.
Bootstrap support for L0P9A3 as seed ortholog is 100%.

Group of orthologs #559. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.jiroveci:72

Q4XSX6              	100.00%		L0PAJ6              	100.00%
Bootstrap support for Q4XSX6 as seed ortholog is 100%.
Bootstrap support for L0PAJ6 as seed ortholog is 100%.

Group of orthologs #560. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.jiroveci:72

Q4Y0Y2              	100.00%		L0PC24              	100.00%
Bootstrap support for Q4Y0Y2 as seed ortholog is 100%.
Bootstrap support for L0PC24 as seed ortholog is 100%.

Group of orthologs #561. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:72 P.jiroveci:72

Q4Y1N0              	100.00%		L0PE48              	100.00%
Bootstrap support for Q4Y1N0 as seed ortholog is 100%.
Bootstrap support for L0PE48 as seed ortholog is 100%.

Group of orthologs #562. Best score 72 bits
Score difference with first non-orthologous sequence - P.chabaudi:15 P.jiroveci:72

Q4Y6P2              	100.00%		L0P913              	100.00%
Bootstrap support for Q4Y6P2 as seed ortholog is 49%.
Alternative seed ortholog is Q4XDW5 (15 bits away from this cluster)
Bootstrap support for L0P913 as seed ortholog is 100%.

Group of orthologs #563. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.jiroveci:71

Q4XEU0              	100.00%		L0P9S9              	100.00%
Q4Y7Y2              	100.00%		L0PDT3              	100.00%
Bootstrap support for Q4XEU0 as seed ortholog is 100%.
Bootstrap support for Q4Y7Y2 as seed ortholog is 100%.
Bootstrap support for L0P9S9 as seed ortholog is 100%.
Bootstrap support for L0PDT3 as seed ortholog is 100%.

Group of orthologs #564. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.jiroveci:15

Q4XEY7              	100.00%		L0PCQ5              	100.00%
Q4XVW3              	53.61%		
Bootstrap support for Q4XEY7 as seed ortholog is 100%.
Bootstrap support for L0PCQ5 as seed ortholog is 81%.

Group of orthologs #565. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.jiroveci:71

Q4XNY4              	100.00%		L0PFK1              	100.00%
Q4XCK9              	70.55%		
Bootstrap support for Q4XNY4 as seed ortholog is 100%.
Bootstrap support for L0PFK1 as seed ortholog is 100%.

Group of orthologs #566. Best score 71 bits
Score difference with first non-orthologous sequence - P.chabaudi:71 P.jiroveci:71

Q4Y4J3              	100.00%		L0P8J6              	100.00%
Bootstrap support for Q4Y4J3 as seed ortholog is 100%.
Bootstrap support for L0P8J6 as seed ortholog is 100%.

Group of orthologs #567. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.jiroveci:70

Q4Y0C6              	100.00%		L0PC85              	100.00%
Q4XJ40              	52.88%		
Bootstrap support for Q4Y0C6 as seed ortholog is 100%.
Bootstrap support for L0PC85 as seed ortholog is 100%.

Group of orthologs #568. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:70 P.jiroveci:70

Q4XUS3              	100.00%		L0P935              	100.00%
Bootstrap support for Q4XUS3 as seed ortholog is 100%.
Bootstrap support for L0P935 as seed ortholog is 100%.

Group of orthologs #569. Best score 70 bits
Score difference with first non-orthologous sequence - P.chabaudi:6 P.jiroveci:70

Q4Y009              	100.00%		L0P724              	100.00%
Bootstrap support for Q4Y009 as seed ortholog is 62%.
Alternative seed ortholog is Q4Y7S5 (6 bits away from this cluster)
Bootstrap support for L0P724 as seed ortholog is 100%.

Group of orthologs #570. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.jiroveci:23

Q4X5G5              	100.00%		L0P881              	100.00%
Bootstrap support for Q4X5G5 as seed ortholog is 100%.
Bootstrap support for L0P881 as seed ortholog is 86%.

Group of orthologs #571. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.jiroveci:69

Q4X638              	100.00%		L0P7G9              	100.00%
Bootstrap support for Q4X638 as seed ortholog is 100%.
Bootstrap support for L0P7G9 as seed ortholog is 100%.

Group of orthologs #572. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.jiroveci:69

Q4Y0E1              	100.00%		L0P9L0              	100.00%
Bootstrap support for Q4Y0E1 as seed ortholog is 100%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #573. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.jiroveci:69

Q4Y3E1              	100.00%		L0PFN7              	100.00%
Bootstrap support for Q4Y3E1 as seed ortholog is 100%.
Bootstrap support for L0PFN7 as seed ortholog is 100%.

Group of orthologs #574. Best score 69 bits
Score difference with first non-orthologous sequence - P.chabaudi:69 P.jiroveci:69

Q4Y793              	100.00%		L0PBX3              	100.00%
Bootstrap support for Q4Y793 as seed ortholog is 100%.
Bootstrap support for L0PBX3 as seed ortholog is 100%.

Group of orthologs #575. Best score 68 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.jiroveci:68

Q4Y0J9              	100.00%		L0PE14              	100.00%
Bootstrap support for Q4Y0J9 as seed ortholog is 100%.
Bootstrap support for L0PE14 as seed ortholog is 100%.

Group of orthologs #576. Best score 68 bits
Score difference with first non-orthologous sequence - P.chabaudi:68 P.jiroveci:68

Q4Y455              	100.00%		L0PCX0              	100.00%
Bootstrap support for Q4Y455 as seed ortholog is 100%.
Bootstrap support for L0PCX0 as seed ortholog is 100%.

Group of orthologs #577. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.jiroveci:67

Q4X8W0              	100.00%		L0PEC9              	100.00%
Bootstrap support for Q4X8W0 as seed ortholog is 100%.
Bootstrap support for L0PEC9 as seed ortholog is 100%.

Group of orthologs #578. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.jiroveci:67

Q4XL60              	100.00%		L0P9X3              	100.00%
Bootstrap support for Q4XL60 as seed ortholog is 100%.
Bootstrap support for L0P9X3 as seed ortholog is 100%.

Group of orthologs #579. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.jiroveci:67

Q4XM95              	100.00%		L0PD56              	100.00%
Bootstrap support for Q4XM95 as seed ortholog is 100%.
Bootstrap support for L0PD56 as seed ortholog is 100%.

Group of orthologs #580. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.jiroveci:6

Q4XQ63              	100.00%		L0PCZ0              	100.00%
Bootstrap support for Q4XQ63 as seed ortholog is 100%.
Bootstrap support for L0PCZ0 as seed ortholog is 59%.
Alternative seed ortholog is L0PAG4 (6 bits away from this cluster)

Group of orthologs #581. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.jiroveci:67

Q4XXP0              	100.00%		L0P7E3              	100.00%
Bootstrap support for Q4XXP0 as seed ortholog is 100%.
Bootstrap support for L0P7E3 as seed ortholog is 100%.

Group of orthologs #582. Best score 67 bits
Score difference with first non-orthologous sequence - P.chabaudi:67 P.jiroveci:4

Q4Y5Z2              	100.00%		L0PD05              	100.00%
Bootstrap support for Q4Y5Z2 as seed ortholog is 100%.
Bootstrap support for L0PD05 as seed ortholog is 48%.
Alternative seed ortholog is L0PEH9 (4 bits away from this cluster)

Group of orthologs #583. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.jiroveci:66

Q4XIV1              	100.00%		L0PDK7              	100.00%
Bootstrap support for Q4XIV1 as seed ortholog is 100%.
Bootstrap support for L0PDK7 as seed ortholog is 100%.

Group of orthologs #584. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.jiroveci:66

Q4XQB3              	100.00%		L0P9U7              	100.00%
Bootstrap support for Q4XQB3 as seed ortholog is 100%.
Bootstrap support for L0P9U7 as seed ortholog is 100%.

Group of orthologs #585. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:2 P.jiroveci:66

Q4XVB6              	100.00%		L0P895              	100.00%
Bootstrap support for Q4XVB6 as seed ortholog is 56%.
Alternative seed ortholog is Q4Y4M6 (2 bits away from this cluster)
Bootstrap support for L0P895 as seed ortholog is 100%.

Group of orthologs #586. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.jiroveci:66

Q4XZX0              	100.00%		L0PAR6              	100.00%
Bootstrap support for Q4XZX0 as seed ortholog is 100%.
Bootstrap support for L0PAR6 as seed ortholog is 100%.

Group of orthologs #587. Best score 66 bits
Score difference with first non-orthologous sequence - P.chabaudi:66 P.jiroveci:66

Q4XZZ1              	100.00%		L0PG83              	100.00%
Bootstrap support for Q4XZZ1 as seed ortholog is 100%.
Bootstrap support for L0PG83 as seed ortholog is 100%.

Group of orthologs #588. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:65 P.jiroveci:65

Q4X754              	100.00%		L0PA05              	100.00%
                    	       		L0PCV1              	9.27%
Bootstrap support for Q4X754 as seed ortholog is 100%.
Bootstrap support for L0PA05 as seed ortholog is 100%.

Group of orthologs #589. Best score 65 bits
Score difference with first non-orthologous sequence - P.chabaudi:24 P.jiroveci:65

Q4XLR6              	100.00%		L0PC94              	100.00%
Bootstrap support for Q4XLR6 as seed ortholog is 91%.
Bootstrap support for L0PC94 as seed ortholog is 100%.

Group of orthologs #590. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.jiroveci:64

Q4Y1C1              	100.00%		L0PB63              	100.00%
Q4XP15              	9.99%		
Bootstrap support for Q4Y1C1 as seed ortholog is 100%.
Bootstrap support for L0PB63 as seed ortholog is 100%.

Group of orthologs #591. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.jiroveci:64

Q4Y1T3              	100.00%		L0PGP1              	100.00%
Q4X7Y3              	7.30%		
Bootstrap support for Q4Y1T3 as seed ortholog is 100%.
Bootstrap support for L0PGP1 as seed ortholog is 100%.

Group of orthologs #592. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.jiroveci:64

Q4X548              	100.00%		L0PEA9              	100.00%
Bootstrap support for Q4X548 as seed ortholog is 100%.
Bootstrap support for L0PEA9 as seed ortholog is 100%.

Group of orthologs #593. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.jiroveci:64

Q4X5C0              	100.00%		L0PGH5              	100.00%
Bootstrap support for Q4X5C0 as seed ortholog is 100%.
Bootstrap support for L0PGH5 as seed ortholog is 100%.

Group of orthologs #594. Best score 64 bits
Score difference with first non-orthologous sequence - P.chabaudi:64 P.jiroveci:64

Q4Y511              	100.00%		L0PB34              	100.00%
Bootstrap support for Q4Y511 as seed ortholog is 100%.
Bootstrap support for L0PB34 as seed ortholog is 100%.

Group of orthologs #595. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:63 P.jiroveci:63

Q4XDW3              	100.00%		L0PF86              	100.00%
                    	       		L0PC10              	87.77%
Bootstrap support for Q4XDW3 as seed ortholog is 100%.
Bootstrap support for L0PF86 as seed ortholog is 100%.

Group of orthologs #596. Best score 63 bits
Score difference with first non-orthologous sequence - P.chabaudi:2 P.jiroveci:63

Q4X9L5              	100.00%		L0PDE4              	100.00%
Bootstrap support for Q4X9L5 as seed ortholog is 55%.
Alternative seed ortholog is Q4XKZ9 (2 bits away from this cluster)
Bootstrap support for L0PDE4 as seed ortholog is 100%.

Group of orthologs #597. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.jiroveci:62

Q4XR20              	100.00%		L0PCY1              	100.00%
Bootstrap support for Q4XR20 as seed ortholog is 100%.
Bootstrap support for L0PCY1 as seed ortholog is 100%.

Group of orthologs #598. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.jiroveci:62

Q4XR07              	100.00%		L0PEX2              	100.00%
Bootstrap support for Q4XR07 as seed ortholog is 100%.
Bootstrap support for L0PEX2 as seed ortholog is 100%.

Group of orthologs #599. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.jiroveci:62

Q4XR02              	100.00%		L0PH05              	100.00%
Bootstrap support for Q4XR02 as seed ortholog is 100%.
Bootstrap support for L0PH05 as seed ortholog is 100%.

Group of orthologs #600. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.jiroveci:62

Q4Y231              	100.00%		L0PC81              	100.00%
Bootstrap support for Q4Y231 as seed ortholog is 100%.
Bootstrap support for L0PC81 as seed ortholog is 100%.

Group of orthologs #601. Best score 62 bits
Score difference with first non-orthologous sequence - P.chabaudi:62 P.jiroveci:62

Q4Y7X1              	100.00%		L0PEW9              	100.00%
Bootstrap support for Q4Y7X1 as seed ortholog is 100%.
Bootstrap support for L0PEW9 as seed ortholog is 100%.

Group of orthologs #602. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:61

Q4X293              	100.00%		L0P9R5              	100.00%
Bootstrap support for Q4X293 as seed ortholog is 100%.
Bootstrap support for L0P9R5 as seed ortholog is 100%.

Group of orthologs #603. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:61

Q4XAW3              	100.00%		L0P9A5              	100.00%
Bootstrap support for Q4XAW3 as seed ortholog is 100%.
Bootstrap support for L0P9A5 as seed ortholog is 100%.

Group of orthologs #604. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:61

Q4XDE2              	100.00%		L0PB77              	100.00%
Bootstrap support for Q4XDE2 as seed ortholog is 100%.
Bootstrap support for L0PB77 as seed ortholog is 100%.

Group of orthologs #605. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:61

Q4XNJ0              	100.00%		L0PDG4              	100.00%
Bootstrap support for Q4XNJ0 as seed ortholog is 100%.
Bootstrap support for L0PDG4 as seed ortholog is 100%.

Group of orthologs #606. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:61

Q4XXC8              	100.00%		L0PAE2              	100.00%
Bootstrap support for Q4XXC8 as seed ortholog is 100%.
Bootstrap support for L0PAE2 as seed ortholog is 100%.

Group of orthologs #607. Best score 61 bits
Score difference with first non-orthologous sequence - P.chabaudi:61 P.jiroveci:61

Q4Y0Q7              	100.00%		L0PCM4              	100.00%
Bootstrap support for Q4Y0Q7 as seed ortholog is 100%.
Bootstrap support for L0PCM4 as seed ortholog is 100%.

Group of orthologs #608. Best score 60 bits
Score difference with first non-orthologous sequence - P.chabaudi:60 P.jiroveci:60

Q4X2B6              	100.00%		L0PBD3              	100.00%
Q4XRR2              	13.30%		L0PCE5              	10.34%
Q4XES1              	11.23%		
Q4XYU1              	8.29%		
Bootstrap support for Q4X2B6 as seed ortholog is 100%.
Bootstrap support for L0PBD3 as seed ortholog is 100%.

Group of orthologs #609. Best score 60 bits
Score difference with first non-orthologous sequence - P.chabaudi:60 P.jiroveci:60

Q4XZR0              	100.00%		L0PCL8              	100.00%
Bootstrap support for Q4XZR0 as seed ortholog is 100%.
Bootstrap support for L0PCL8 as seed ortholog is 100%.

Group of orthologs #610. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.jiroveci:59

Q4XFB1              	100.00%		L0PE76              	100.00%
Q4XWQ6              	75.42%		
Bootstrap support for Q4XFB1 as seed ortholog is 100%.
Bootstrap support for L0PE76 as seed ortholog is 100%.

Group of orthologs #611. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.jiroveci:59

Q4XU68              	100.00%		L0P9P5              	100.00%
Q4XN38              	9.92%		
Bootstrap support for Q4XU68 as seed ortholog is 100%.
Bootstrap support for L0P9P5 as seed ortholog is 100%.

Group of orthologs #612. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.jiroveci:59

Q4XKX4              	100.00%		L0PFZ8              	100.00%
Bootstrap support for Q4XKX4 as seed ortholog is 100%.
Bootstrap support for L0PFZ8 as seed ortholog is 100%.

Group of orthologs #613. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.jiroveci:11

Q4Y1W6              	100.00%		L0PBZ3              	100.00%
Bootstrap support for Q4Y1W6 as seed ortholog is 100%.
Bootstrap support for L0PBZ3 as seed ortholog is 67%.
Alternative seed ortholog is L0PG46 (11 bits away from this cluster)

Group of orthologs #614. Best score 59 bits
Score difference with first non-orthologous sequence - P.chabaudi:59 P.jiroveci:59

Q4Y4N3              	100.00%		L0P9Q8              	100.00%
Bootstrap support for Q4Y4N3 as seed ortholog is 100%.
Bootstrap support for L0P9Q8 as seed ortholog is 100%.

Group of orthologs #615. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.jiroveci:58

Q4XT30              	100.00%		L0PAJ4              	100.00%
Q4X5D0              	36.67%		
Bootstrap support for Q4XT30 as seed ortholog is 100%.
Bootstrap support for L0PAJ4 as seed ortholog is 100%.

Group of orthologs #616. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.jiroveci:58

Q4Y0E2              	100.00%		L0PFT7              	100.00%
Q4X6R1              	49.36%		
Bootstrap support for Q4Y0E2 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #617. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.jiroveci:58

Q4X6L9              	100.00%		L0PEB3              	100.00%
Bootstrap support for Q4X6L9 as seed ortholog is 100%.
Bootstrap support for L0PEB3 as seed ortholog is 100%.

Group of orthologs #618. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.jiroveci:58

Q4XLE8              	100.00%		L0PCI3              	100.00%
Bootstrap support for Q4XLE8 as seed ortholog is 100%.
Bootstrap support for L0PCI3 as seed ortholog is 100%.

Group of orthologs #619. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.jiroveci:58

Q4XQ55              	100.00%		L0PEL2              	100.00%
Bootstrap support for Q4XQ55 as seed ortholog is 100%.
Bootstrap support for L0PEL2 as seed ortholog is 100%.

Group of orthologs #620. Best score 58 bits
Score difference with first non-orthologous sequence - P.chabaudi:58 P.jiroveci:58

Q4XX52              	100.00%		L0PD90              	100.00%
Bootstrap support for Q4XX52 as seed ortholog is 100%.
Bootstrap support for L0PD90 as seed ortholog is 100%.

Group of orthologs #621. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:57

Q4XGZ3              	100.00%		L0PGZ6              	100.00%
Q4XSD1              	60.68%		
Bootstrap support for Q4XGZ3 as seed ortholog is 100%.
Bootstrap support for L0PGZ6 as seed ortholog is 100%.

Group of orthologs #622. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:57

Q4XB97              	100.00%		L0PHC9              	100.00%
Bootstrap support for Q4XB97 as seed ortholog is 100%.
Bootstrap support for L0PHC9 as seed ortholog is 100%.

Group of orthologs #623. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:57

Q4XDL2              	100.00%		L0PF91              	100.00%
Bootstrap support for Q4XDL2 as seed ortholog is 100%.
Bootstrap support for L0PF91 as seed ortholog is 100%.

Group of orthologs #624. Best score 57 bits
Score difference with first non-orthologous sequence - P.chabaudi:57 P.jiroveci:57

Q4Y5R9              	100.00%		L0PEG7              	100.00%
Bootstrap support for Q4Y5R9 as seed ortholog is 100%.
Bootstrap support for L0PEG7 as seed ortholog is 100%.

Group of orthologs #625. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.jiroveci:56

Q4X7A1              	100.00%		L0PEL9              	100.00%
Bootstrap support for Q4X7A1 as seed ortholog is 100%.
Bootstrap support for L0PEL9 as seed ortholog is 100%.

Group of orthologs #626. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.jiroveci:56

Q4XNV6              	100.00%		L0PDD8              	100.00%
Bootstrap support for Q4XNV6 as seed ortholog is 100%.
Bootstrap support for L0PDD8 as seed ortholog is 100%.

Group of orthologs #627. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.jiroveci:56

Q4XX27              	100.00%		L0PBP5              	100.00%
Bootstrap support for Q4XX27 as seed ortholog is 100%.
Bootstrap support for L0PBP5 as seed ortholog is 100%.

Group of orthologs #628. Best score 56 bits
Score difference with first non-orthologous sequence - P.chabaudi:56 P.jiroveci:56

Q4XVC2              	100.00%		L0PE66              	100.00%
Bootstrap support for Q4XVC2 as seed ortholog is 100%.
Bootstrap support for L0PE66 as seed ortholog is 100%.

Group of orthologs #629. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.jiroveci:55

Q4Y8T5              	100.00%		L0P9T4              	100.00%
Q4XNM0              	6.40%		L0PFA0              	81.43%
Bootstrap support for Q4Y8T5 as seed ortholog is 100%.
Bootstrap support for L0P9T4 as seed ortholog is 100%.

Group of orthologs #630. Best score 55 bits
Score difference with first non-orthologous sequence - P.chabaudi:55 P.jiroveci:55

Q4XVC3              	100.00%		L0P7K1              	100.00%
Bootstrap support for Q4XVC3 as seed ortholog is 100%.
Bootstrap support for L0P7K1 as seed ortholog is 100%.

Group of orthologs #631. Best score 54 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.jiroveci:54

Q4XW35              	100.00%		L0PE61              	100.00%
Q4XTG3              	34.63%		
Q4X6W0              	12.52%		
Bootstrap support for Q4XW35 as seed ortholog is 100%.
Bootstrap support for L0PE61 as seed ortholog is 100%.

Group of orthologs #632. Best score 54 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.jiroveci:54

Q4XUJ1              	100.00%		L0PEB4              	100.00%
Bootstrap support for Q4XUJ1 as seed ortholog is 100%.
Bootstrap support for L0PEB4 as seed ortholog is 100%.

Group of orthologs #633. Best score 54 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.jiroveci:54

Q4XVX3              	100.00%		L0PFP4              	100.00%
Bootstrap support for Q4XVX3 as seed ortholog is 100%.
Bootstrap support for L0PFP4 as seed ortholog is 100%.

Group of orthologs #634. Best score 54 bits
Score difference with first non-orthologous sequence - P.chabaudi:54 P.jiroveci:54

Q4Y7X8              	100.00%		L0PE32              	100.00%
Bootstrap support for Q4Y7X8 as seed ortholog is 100%.
Bootstrap support for L0PE32 as seed ortholog is 100%.

Group of orthologs #635. Best score 53 bits
Score difference with first non-orthologous sequence - P.chabaudi:53 P.jiroveci:53

Q4Y5X8              	100.00%		L0P7Q6              	100.00%
Bootstrap support for Q4Y5X8 as seed ortholog is 100%.
Bootstrap support for L0P7Q6 as seed ortholog is 100%.

Group of orthologs #636. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.jiroveci:52

Q4Y6M9              	100.00%		L0PGZ1              	100.00%
                    	       		L0PGM3              	87.82%
Bootstrap support for Q4Y6M9 as seed ortholog is 100%.
Bootstrap support for L0PGZ1 as seed ortholog is 100%.

Group of orthologs #637. Best score 52 bits
Score difference with first non-orthologous sequence - P.chabaudi:52 P.jiroveci:52

Q4XE41              	100.00%		L0PBZ4              	100.00%
Bootstrap support for Q4XE41 as seed ortholog is 100%.
Bootstrap support for L0PBZ4 as seed ortholog is 100%.

Group of orthologs #638. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.jiroveci:51

Q4X3R8              	100.00%		L0PEI2              	100.00%
Bootstrap support for Q4X3R8 as seed ortholog is 100%.
Bootstrap support for L0PEI2 as seed ortholog is 100%.

Group of orthologs #639. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.jiroveci:51

Q4XEK9              	100.00%		L0P7W3              	100.00%
Bootstrap support for Q4XEK9 as seed ortholog is 100%.
Bootstrap support for L0P7W3 as seed ortholog is 100%.

Group of orthologs #640. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.jiroveci:51

Q4XSE2              	100.00%		L0PAR9              	100.00%
Bootstrap support for Q4XSE2 as seed ortholog is 100%.
Bootstrap support for L0PAR9 as seed ortholog is 100%.

Group of orthologs #641. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.jiroveci:51

Q4Y353              	100.00%		L0PG35              	100.00%
Bootstrap support for Q4Y353 as seed ortholog is 100%.
Bootstrap support for L0PG35 as seed ortholog is 100%.

Group of orthologs #642. Best score 51 bits
Score difference with first non-orthologous sequence - P.chabaudi:51 P.jiroveci:51

Q4Y964              	100.00%		L0PGA8              	100.00%
Bootstrap support for Q4Y964 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #643. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.jiroveci:50

Q4Y0V6              	100.00%		L0P9Y3              	100.00%
                    	       		L0PF70              	5.33%
Bootstrap support for Q4Y0V6 as seed ortholog is 100%.
Bootstrap support for L0P9Y3 as seed ortholog is 100%.

Group of orthologs #644. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.jiroveci:50

Q4XW81              	100.00%		L0PCX6              	100.00%
Bootstrap support for Q4XW81 as seed ortholog is 100%.
Bootstrap support for L0PCX6 as seed ortholog is 100%.

Group of orthologs #645. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.jiroveci:50

Q4Y5I5              	100.00%		L0PB99              	100.00%
Bootstrap support for Q4Y5I5 as seed ortholog is 100%.
Bootstrap support for L0PB99 as seed ortholog is 100%.

Group of orthologs #646. Best score 50 bits
Score difference with first non-orthologous sequence - P.chabaudi:50 P.jiroveci:50

Q4Y5F0              	100.00%		L0PC89              	100.00%
Bootstrap support for Q4Y5F0 as seed ortholog is 100%.
Bootstrap support for L0PC89 as seed ortholog is 100%.

Group of orthologs #647. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.jiroveci:49

Q4XHI3              	100.00%		L0PDR2              	100.00%
Q4Y0X7              	100.00%		
Bootstrap support for Q4XHI3 as seed ortholog is 100%.
Bootstrap support for Q4Y0X7 as seed ortholog is 100%.
Bootstrap support for L0PDR2 as seed ortholog is 100%.

Group of orthologs #648. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.jiroveci:49

Q4XSD0              	100.00%		L0P883              	100.00%
Q4Y3F1              	100.00%		
Bootstrap support for Q4XSD0 as seed ortholog is 100%.
Bootstrap support for Q4Y3F1 as seed ortholog is 100%.
Bootstrap support for L0P883 as seed ortholog is 100%.

Group of orthologs #649. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.jiroveci:49

Q4X7P7              	100.00%		L0PC95              	100.00%
Bootstrap support for Q4X7P7 as seed ortholog is 100%.
Bootstrap support for L0PC95 as seed ortholog is 100%.

Group of orthologs #650. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:1 P.jiroveci:49

Q4XGP2              	100.00%		L0P8Q3              	100.00%
Bootstrap support for Q4XGP2 as seed ortholog is 52%.
Alternative seed ortholog is Q4XLM5 (1 bits away from this cluster)
Bootstrap support for L0P8Q3 as seed ortholog is 100%.

Group of orthologs #651. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.jiroveci:49

Q4XRF9              	100.00%		L0PB78              	100.00%
Bootstrap support for Q4XRF9 as seed ortholog is 100%.
Bootstrap support for L0PB78 as seed ortholog is 100%.

Group of orthologs #652. Best score 49 bits
Score difference with first non-orthologous sequence - P.chabaudi:49 P.jiroveci:49

Q4Y8Z4              	100.00%		L0PAI3              	100.00%
Bootstrap support for Q4Y8Z4 as seed ortholog is 100%.
Bootstrap support for L0PAI3 as seed ortholog is 100%.

Group of orthologs #653. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.jiroveci:48

Q4XFG4              	100.00%		L0P7Q8              	100.00%
Bootstrap support for Q4XFG4 as seed ortholog is 100%.
Bootstrap support for L0P7Q8 as seed ortholog is 100%.

Group of orthologs #654. Best score 48 bits
Score difference with first non-orthologous sequence - P.chabaudi:48 P.jiroveci:48

Q4XWK1              	100.00%		L0PC75              	100.00%
Bootstrap support for Q4XWK1 as seed ortholog is 100%.
Bootstrap support for L0PC75 as seed ortholog is 100%.

Group of orthologs #655. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.jiroveci:47

Q4Y6N2              	100.00%		L0PFM1              	100.00%
Q4Y483              	11.51%		
Bootstrap support for Q4Y6N2 as seed ortholog is 100%.
Bootstrap support for L0PFM1 as seed ortholog is 100%.

Group of orthologs #656. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.jiroveci:47

Q4XBC6              	100.00%		L0P7S5              	100.00%
Bootstrap support for Q4XBC6 as seed ortholog is 100%.
Bootstrap support for L0P7S5 as seed ortholog is 100%.

Group of orthologs #657. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.jiroveci:47

Q4XFX6              	100.00%		L0PC70              	100.00%
Bootstrap support for Q4XFX6 as seed ortholog is 100%.
Bootstrap support for L0PC70 as seed ortholog is 100%.

Group of orthologs #658. Best score 47 bits
Score difference with first non-orthologous sequence - P.chabaudi:47 P.jiroveci:47

Q4XDR2              	100.00%		L0PG69              	100.00%
Bootstrap support for Q4XDR2 as seed ortholog is 100%.
Bootstrap support for L0PG69 as seed ortholog is 100%.

Group of orthologs #659. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.jiroveci:46

Q4XAX6              	100.00%		L0PE10              	100.00%
Q4Y856              	97.17%		
Bootstrap support for Q4XAX6 as seed ortholog is 100%.
Bootstrap support for L0PE10 as seed ortholog is 100%.

Group of orthologs #660. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.jiroveci:46

Q4XEZ6              	100.00%		L0PEU0              	100.00%
Q4XWE4              	78.26%		
Bootstrap support for Q4XEZ6 as seed ortholog is 100%.
Bootstrap support for L0PEU0 as seed ortholog is 100%.

Group of orthologs #661. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.jiroveci:1

Q4Y327              	100.00%		L0P982              	100.00%
Bootstrap support for Q4Y327 as seed ortholog is 100%.
Bootstrap support for L0P982 as seed ortholog is 51%.
Alternative seed ortholog is L0PB40 (1 bits away from this cluster)

Group of orthologs #662. Best score 46 bits
Score difference with first non-orthologous sequence - P.chabaudi:46 P.jiroveci:46

Q4Y289              	100.00%		L0PHH5              	100.00%
Bootstrap support for Q4Y289 as seed ortholog is 100%.
Bootstrap support for L0PHH5 as seed ortholog is 100%.

Group of orthologs #663. Best score 45 bits
Score difference with first non-orthologous sequence - P.chabaudi:45 P.jiroveci:45

Q4X5W7              	100.00%		L0PDS7              	100.00%
Q4XZ41              	100.00%		
Bootstrap support for Q4X5W7 as seed ortholog is 100%.
Bootstrap support for Q4XZ41 as seed ortholog is 100%.
Bootstrap support for L0PDS7 as seed ortholog is 100%.

Group of orthologs #664. Best score 45 bits
Score difference with first non-orthologous sequence - P.chabaudi:45 P.jiroveci:45

Q4XQE9              	100.00%		L0PA58              	100.00%
Bootstrap support for Q4XQE9 as seed ortholog is 100%.
Bootstrap support for L0PA58 as seed ortholog is 100%.

Group of orthologs #665. Best score 44 bits
Score difference with first non-orthologous sequence - P.chabaudi:44 P.jiroveci:44

Q4XZ89              	100.00%		L0PFF3              	100.00%
Bootstrap support for Q4XZ89 as seed ortholog is 100%.
Bootstrap support for L0PFF3 as seed ortholog is 100%.

Group of orthologs #666. Best score 43 bits
Score difference with first non-orthologous sequence - P.chabaudi:43 P.jiroveci:43

Q4Y543              	100.00%		L0PEE4              	100.00%
Q4XF17              	51.99%		
Bootstrap support for Q4Y543 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.

Group of orthologs #667. Best score 42 bits
Score difference with first non-orthologous sequence - P.chabaudi:42 P.jiroveci:42

Q4Y8S3              	100.00%		L0PE69              	100.00%
Bootstrap support for Q4Y8S3 as seed ortholog is 100%.
Bootstrap support for L0PE69 as seed ortholog is 100%.