###################################
232 groups of orthologs
258 in-paralogs from M.jannaschii
472 in-paralogs from P.pacificus
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 671 bits
Score difference with first non-orthologous sequence - M.jannaschii:671 P.pacificus:416

Q58445              	100.00%		H3G223              	100.00%
Bootstrap support for Q58445 as seed ortholog is 100%.
Bootstrap support for H3G223 as seed ortholog is 100%.

Group of orthologs #2. Best score 663 bits
Score difference with first non-orthologous sequence - M.jannaschii:663 P.pacificus:663

Q58556              	100.00%		H3EEN1              	100.00%
                    	       		H3F9W2              	81.74%
Bootstrap support for Q58556 as seed ortholog is 100%.
Bootstrap support for H3EEN1 as seed ortholog is 100%.

Group of orthologs #3. Best score 565 bits
Score difference with first non-orthologous sequence - M.jannaschii:565 P.pacificus:458

Q57670              	100.00%		H3E0X4              	100.00%
                    	       		H3FMM2              	29.40%
Bootstrap support for Q57670 as seed ortholog is 100%.
Bootstrap support for H3E0X4 as seed ortholog is 100%.

Group of orthologs #4. Best score 539 bits
Score difference with first non-orthologous sequence - M.jannaschii:539 P.pacificus:140

Q57669              	100.00%		H3F9B3              	100.00%
Bootstrap support for Q57669 as seed ortholog is 100%.
Bootstrap support for H3F9B3 as seed ortholog is 100%.

Group of orthologs #5. Best score 534 bits
Score difference with first non-orthologous sequence - M.jannaschii:534 P.pacificus:426

Q58129              	100.00%		H3EKM5              	100.00%
Bootstrap support for Q58129 as seed ortholog is 100%.
Bootstrap support for H3EKM5 as seed ortholog is 100%.

Group of orthologs #6. Best score 487 bits
Score difference with first non-orthologous sequence - M.jannaschii:187 P.pacificus:307

Q58357              	100.00%		H3DXV3              	100.00%
Bootstrap support for Q58357 as seed ortholog is 99%.
Bootstrap support for H3DXV3 as seed ortholog is 100%.

Group of orthologs #7. Best score 479 bits
Score difference with first non-orthologous sequence - M.jannaschii:479 P.pacificus:479

Q57681              	100.00%		H3EZU4              	100.00%
Bootstrap support for Q57681 as seed ortholog is 100%.
Bootstrap support for H3EZU4 as seed ortholog is 100%.

Group of orthologs #8. Best score 475 bits
Score difference with first non-orthologous sequence - M.jannaschii:364 P.pacificus:226

Q57770              	100.00%		B5RI02              	100.00%
Bootstrap support for Q57770 as seed ortholog is 100%.
Bootstrap support for B5RI02 as seed ortholog is 100%.

Group of orthologs #9. Best score 462 bits
Score difference with first non-orthologous sequence - M.jannaschii:462 P.pacificus:108

Q58626              	100.00%		H3FND8              	100.00%
Bootstrap support for Q58626 as seed ortholog is 100%.
Bootstrap support for H3FND8 as seed ortholog is 99%.

Group of orthologs #10. Best score 454 bits
Score difference with first non-orthologous sequence - M.jannaschii:454 P.pacificus:454

Q60173              	100.00%		H3EAP3              	100.00%
Bootstrap support for Q60173 as seed ortholog is 100%.
Bootstrap support for H3EAP3 as seed ortholog is 100%.

Group of orthologs #11. Best score 447 bits
Score difference with first non-orthologous sequence - M.jannaschii:447 P.pacificus:447

Q58574              	100.00%		H3F9V0              	100.00%
Bootstrap support for Q58574 as seed ortholog is 100%.
Bootstrap support for H3F9V0 as seed ortholog is 100%.

Group of orthologs #12. Best score 438 bits
Score difference with first non-orthologous sequence - M.jannaschii:307 P.pacificus:338

Q58050              	100.00%		H3E990              	100.00%
Bootstrap support for Q58050 as seed ortholog is 100%.
Bootstrap support for H3E990 as seed ortholog is 100%.

Group of orthologs #13. Best score 417 bits
Score difference with first non-orthologous sequence - M.jannaschii:417 P.pacificus:141

Q58448              	100.00%		H3FAW0              	100.00%
                    	       		H3EW86              	42.85%
                    	       		H3F4I5              	27.01%
Bootstrap support for Q58448 as seed ortholog is 100%.
Bootstrap support for H3FAW0 as seed ortholog is 99%.

Group of orthologs #14. Best score 377 bits
Score difference with first non-orthologous sequence - M.jannaschii:377 P.pacificus:41

Q58405              	100.00%		H3FK03              	100.00%
Bootstrap support for Q58405 as seed ortholog is 100%.
Bootstrap support for H3FK03 as seed ortholog is 84%.

Group of orthologs #15. Best score 375 bits
Score difference with first non-orthologous sequence - M.jannaschii:375 P.pacificus:297

Q58657              	100.00%		H3G0Z8              	100.00%
Bootstrap support for Q58657 as seed ortholog is 100%.
Bootstrap support for H3G0Z8 as seed ortholog is 100%.

Group of orthologs #16. Best score 368 bits
Score difference with first non-orthologous sequence - M.jannaschii:217 P.pacificus:17

Q58576              	100.00%		H3E5Y1              	100.00%
Bootstrap support for Q58576 as seed ortholog is 100%.
Bootstrap support for H3E5Y1 as seed ortholog is 61%.
Alternative seed ortholog is H3FCA2 (17 bits away from this cluster)

Group of orthologs #17. Best score 352 bits
Score difference with first non-orthologous sequence - M.jannaschii:352 P.pacificus:352

Q60181              	100.00%		H3EQN7              	100.00%
Bootstrap support for Q60181 as seed ortholog is 100%.
Bootstrap support for H3EQN7 as seed ortholog is 100%.

Group of orthologs #18. Best score 328 bits
Score difference with first non-orthologous sequence - M.jannaschii:328 P.pacificus:39

Q57565              	100.00%		H3F585              	100.00%
Bootstrap support for Q57565 as seed ortholog is 100%.
Bootstrap support for H3F585 as seed ortholog is 85%.

Group of orthologs #19. Best score 325 bits
Score difference with first non-orthologous sequence - M.jannaschii:325 P.pacificus:325

Q58628              	100.00%		H3G2T6              	100.00%
Bootstrap support for Q58628 as seed ortholog is 100%.
Bootstrap support for H3G2T6 as seed ortholog is 100%.

Group of orthologs #20. Best score 321 bits
Score difference with first non-orthologous sequence - M.jannaschii:321 P.pacificus:321

Q58783              	100.00%		H3EHZ4              	100.00%
Bootstrap support for Q58783 as seed ortholog is 100%.
Bootstrap support for H3EHZ4 as seed ortholog is 100%.

Group of orthologs #21. Best score 311 bits
Score difference with first non-orthologous sequence - M.jannaschii:311 P.pacificus:166

Q60356              	100.00%		H3G214              	100.00%
Bootstrap support for Q60356 as seed ortholog is 100%.
Bootstrap support for H3G214 as seed ortholog is 99%.

Group of orthologs #22. Best score 283 bits
Score difference with first non-orthologous sequence - M.jannaschii:283 P.pacificus:92

Q58950              	100.00%		H3DTC8              	100.00%
Bootstrap support for Q58950 as seed ortholog is 100%.
Bootstrap support for H3DTC8 as seed ortholog is 98%.

Group of orthologs #23. Best score 269 bits
Score difference with first non-orthologous sequence - M.jannaschii:269 P.pacificus:269

Q58635              	100.00%		H3EHS1              	100.00%
Bootstrap support for Q58635 as seed ortholog is 100%.
Bootstrap support for H3EHS1 as seed ortholog is 100%.

Group of orthologs #24. Best score 268 bits
Score difference with first non-orthologous sequence - M.jannaschii:268 P.pacificus:89

Q58424              	100.00%		H3E068              	100.00%
Bootstrap support for Q58424 as seed ortholog is 100%.
Bootstrap support for H3E068 as seed ortholog is 99%.

Group of orthologs #25. Best score 266 bits
Score difference with first non-orthologous sequence - M.jannaschii:266 P.pacificus:266

Q58224              	100.00%		H3EES7              	100.00%
Bootstrap support for Q58224 as seed ortholog is 100%.
Bootstrap support for H3EES7 as seed ortholog is 100%.

Group of orthologs #26. Best score 264 bits
Score difference with first non-orthologous sequence - M.jannaschii:264 P.pacificus:264

Q57612              	100.00%		H3DWE5              	100.00%
Bootstrap support for Q57612 as seed ortholog is 100%.
Bootstrap support for H3DWE5 as seed ortholog is 100%.

Group of orthologs #27. Best score 262 bits
Score difference with first non-orthologous sequence - M.jannaschii:262 P.pacificus:262

Q58508              	100.00%		H3FK11              	100.00%
Bootstrap support for Q58508 as seed ortholog is 100%.
Bootstrap support for H3FK11 as seed ortholog is 100%.

Group of orthologs #28. Best score 260 bits
Score difference with first non-orthologous sequence - M.jannaschii:260 P.pacificus:124

Q58659              	100.00%		H3EGW9              	100.00%
Bootstrap support for Q58659 as seed ortholog is 100%.
Bootstrap support for H3EGW9 as seed ortholog is 97%.

Group of orthologs #29. Best score 260 bits
Score difference with first non-orthologous sequence - M.jannaschii:260 P.pacificus:260

Q58116              	100.00%		H3F5U5              	100.00%
Bootstrap support for Q58116 as seed ortholog is 100%.
Bootstrap support for H3F5U5 as seed ortholog is 100%.

Group of orthologs #30. Best score 248 bits
Score difference with first non-orthologous sequence - M.jannaschii:248 P.pacificus:45

Q58623              	100.00%		H3EQM1              	100.00%
                    	       		H3ESS7              	13.25%
                    	       		H3EM23              	12.52%
                    	       		H3EHE6              	9.88%
Bootstrap support for Q58623 as seed ortholog is 100%.
Bootstrap support for H3EQM1 as seed ortholog is 75%.

Group of orthologs #31. Best score 248 bits
Score difference with first non-orthologous sequence - M.jannaschii:248 P.pacificus:67

Q58806              	100.00%		H3FSN1              	100.00%
                    	       		H3EGL7              	22.18%
                    	       		H3DYC5              	6.74%
                    	       		H3ENB3              	5.58%
Bootstrap support for Q58806 as seed ortholog is 100%.
Bootstrap support for H3FSN1 as seed ortholog is 94%.

Group of orthologs #32. Best score 246 bits
Score difference with first non-orthologous sequence - M.jannaschii:246 P.pacificus:246

Q60175              	100.00%		H3F592              	100.00%
                    	       		H3F2F7              	53.87%
                    	       		H3F0V3              	48.54%
                    	       		H3EPG0              	48.36%
                    	       		H3FVP6              	35.28%
                    	       		H3FWV1              	35.11%
                    	       		H3DUE9              	16.18%
                    	       		H3DWE9              	13.25%
Bootstrap support for Q60175 as seed ortholog is 100%.
Bootstrap support for H3F592 as seed ortholog is 100%.

Group of orthologs #33. Best score 244 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pacificus:244

Q58454              	100.00%		H3EXS5              	100.00%
Bootstrap support for Q58454 as seed ortholog is 99%.
Bootstrap support for H3EXS5 as seed ortholog is 100%.

Group of orthologs #34. Best score 243 bits
Score difference with first non-orthologous sequence - M.jannaschii:175 P.pacificus:30

Q58083              	100.00%		H3DS62              	100.00%
                    	       		H3EQB2              	47.80%
                    	       		H3DYV5              	9.52%
Bootstrap support for Q58083 as seed ortholog is 99%.
Bootstrap support for H3DS62 as seed ortholog is 79%.

Group of orthologs #35. Best score 235 bits
Score difference with first non-orthologous sequence - M.jannaschii:166 P.pacificus:235

Q49593              	100.00%		H3DXD0              	100.00%
                    	       		H3FT97              	8.01%
Bootstrap support for Q49593 as seed ortholog is 100%.
Bootstrap support for H3DXD0 as seed ortholog is 100%.

Group of orthologs #36. Best score 235 bits
Score difference with first non-orthologous sequence - M.jannaschii:146 P.pacificus:123

Q58131              	100.00%		H3EZC5              	100.00%
Bootstrap support for Q58131 as seed ortholog is 99%.
Bootstrap support for H3EZC5 as seed ortholog is 99%.

Group of orthologs #37. Best score 235 bits
Score difference with first non-orthologous sequence - M.jannaschii:235 P.pacificus:235

Q58815              	100.00%		H3F2P7              	100.00%
Bootstrap support for Q58815 as seed ortholog is 100%.
Bootstrap support for H3F2P7 as seed ortholog is 100%.

Group of orthologs #38. Best score 228 bits
Score difference with first non-orthologous sequence - M.jannaschii:228 P.pacificus:228

P54017              	100.00%		A6YM72              	100.00%
Bootstrap support for P54017 as seed ortholog is 100%.
Bootstrap support for A6YM72 as seed ortholog is 100%.

Group of orthologs #39. Best score 227 bits
Score difference with first non-orthologous sequence - M.jannaschii:227 P.pacificus:85

Q58444              	100.00%		H3F846              	100.00%
Bootstrap support for Q58444 as seed ortholog is 100%.
Bootstrap support for H3F846 as seed ortholog is 97%.

Group of orthologs #40. Best score 226 bits
Score difference with first non-orthologous sequence - M.jannaschii:226 P.pacificus:226

Q58374              	100.00%		H3EWV4              	100.00%
Bootstrap support for Q58374 as seed ortholog is 100%.
Bootstrap support for H3EWV4 as seed ortholog is 100%.

Group of orthologs #41. Best score 215 bits
Score difference with first non-orthologous sequence - M.jannaschii:215 P.pacificus:65

Q58715              	100.00%		H3DRM2              	100.00%
                    	       		H3DXU6              	100.00%
                    	       		H3DZG5              	17.11%
                    	       		H3ESG8              	7.32%
Bootstrap support for Q58715 as seed ortholog is 100%.
Bootstrap support for H3DRM2 as seed ortholog is 77%.
Bootstrap support for H3DXU6 as seed ortholog is 89%.

Group of orthologs #42. Best score 215 bits
Score difference with first non-orthologous sequence - M.jannaschii:215 P.pacificus:215

Q58239              	100.00%		H3EPS1              	100.00%
                    	       		H3ETA1              	34.89%
Bootstrap support for Q58239 as seed ortholog is 100%.
Bootstrap support for H3EPS1 as seed ortholog is 100%.

Group of orthologs #43. Best score 212 bits
Score difference with first non-orthologous sequence - M.jannaschii:212 P.pacificus:212

Q59011              	100.00%		H3F667              	100.00%
                    	       		H3FNB1              	84.34%
Bootstrap support for Q59011 as seed ortholog is 100%.
Bootstrap support for H3F667 as seed ortholog is 100%.

Group of orthologs #44. Best score 211 bits
Score difference with first non-orthologous sequence - M.jannaschii:211 P.pacificus:211

Q59020              	100.00%		H3FRJ7              	100.00%
Bootstrap support for Q59020 as seed ortholog is 100%.
Bootstrap support for H3FRJ7 as seed ortholog is 100%.

Group of orthologs #45. Best score 210 bits
Score difference with first non-orthologous sequence - M.jannaschii:210 P.pacificus:210

Q58884              	100.00%		H3F659              	100.00%
Q58371              	24.51%		H3FRP5              	5.78%
Q57809              	19.66%		H3F8L4              	5.01%
Q60275              	8.64%		
Bootstrap support for Q58884 as seed ortholog is 100%.
Bootstrap support for H3F659 as seed ortholog is 100%.

Group of orthologs #46. Best score 210 bits
Score difference with first non-orthologous sequence - M.jannaschii:210 P.pacificus:126

Q57626              	100.00%		H3F4N1              	100.00%
Q58633              	13.79%		
Bootstrap support for Q57626 as seed ortholog is 100%.
Bootstrap support for H3F4N1 as seed ortholog is 99%.

Group of orthologs #47. Best score 207 bits
Score difference with first non-orthologous sequence - M.jannaschii:207 P.pacificus:131

Q57635              	100.00%		H3FYB7              	100.00%
Bootstrap support for Q57635 as seed ortholog is 100%.
Bootstrap support for H3FYB7 as seed ortholog is 99%.

Group of orthologs #48. Best score 204 bits
Score difference with first non-orthologous sequence - M.jannaschii:204 P.pacificus:204

Q59046              	100.00%		H3FCH9              	100.00%
                    	       		H3G0S0              	10.49%
                    	       		H3G0S1              	8.65%
Bootstrap support for Q59046 as seed ortholog is 100%.
Bootstrap support for H3FCH9 as seed ortholog is 100%.

Group of orthologs #49. Best score 202 bits
Score difference with first non-orthologous sequence - M.jannaschii:202 P.pacificus:36

Q57739              	100.00%		H3FYE0              	100.00%
Bootstrap support for Q57739 as seed ortholog is 100%.
Bootstrap support for H3FYE0 as seed ortholog is 84%.

Group of orthologs #50. Best score 200 bits
Score difference with first non-orthologous sequence - M.jannaschii:200 P.pacificus:121

P54014              	100.00%		H3EB14              	100.00%
                    	       		H3F0J5              	9.87%
                    	       		H3DYG3              	9.70%
                    	       		H3E4H0              	9.70%
                    	       		H3FWX7              	9.70%
                    	       		H3EPI2              	9.70%
                    	       		H3EYX5              	9.54%
                    	       		H3E4I4              	7.89%
Bootstrap support for P54014 as seed ortholog is 100%.
Bootstrap support for H3EB14 as seed ortholog is 99%.

Group of orthologs #51. Best score 196 bits
Score difference with first non-orthologous sequence - M.jannaschii:196 P.pacificus:196

Q57572              	100.00%		H3G361              	100.00%
Bootstrap support for Q57572 as seed ortholog is 100%.
Bootstrap support for H3G361 as seed ortholog is 100%.

Group of orthologs #52. Best score 194 bits
Score difference with first non-orthologous sequence - M.jannaschii:194 P.pacificus:26

Q58130              	100.00%		H3FHB8              	100.00%
Q58991              	23.49%		H3EH02              	14.22%
                    	       		H3FQ02              	10.55%
Bootstrap support for Q58130 as seed ortholog is 100%.
Bootstrap support for H3FHB8 as seed ortholog is 78%.

Group of orthologs #53. Best score 194 bits
Score difference with first non-orthologous sequence - M.jannaschii:194 P.pacificus:194

Q58992              	100.00%		H3E2U4              	100.00%
Bootstrap support for Q58992 as seed ortholog is 100%.
Bootstrap support for H3E2U4 as seed ortholog is 100%.

Group of orthologs #54. Best score 193 bits
Score difference with first non-orthologous sequence - M.jannaschii:193 P.pacificus:17

Q60177              	100.00%		H3E9U4              	100.00%
Bootstrap support for Q60177 as seed ortholog is 100%.
Bootstrap support for H3E9U4 as seed ortholog is 70%.
Alternative seed ortholog is H3E0P5 (17 bits away from this cluster)

Group of orthologs #55. Best score 192 bits
Score difference with first non-orthologous sequence - M.jannaschii:100 P.pacificus:4

Q59037              	100.00%		H3F6Z4              	100.00%
Bootstrap support for Q59037 as seed ortholog is 97%.
Bootstrap support for H3F6Z4 as seed ortholog is 94%.

Group of orthologs #56. Best score 190 bits
Score difference with first non-orthologous sequence - M.jannaschii:190 P.pacificus:190

Q58820              	100.00%		H3FZN1              	100.00%
                    	       		H3E4W4              	8.03%
Bootstrap support for Q58820 as seed ortholog is 100%.
Bootstrap support for H3FZN1 as seed ortholog is 100%.

Group of orthologs #57. Best score 188 bits
Score difference with first non-orthologous sequence - M.jannaschii:188 P.pacificus:188

Q58542              	100.00%		H3EZ06              	100.00%
Bootstrap support for Q58542 as seed ortholog is 100%.
Bootstrap support for H3EZ06 as seed ortholog is 100%.

Group of orthologs #58. Best score 185 bits
Score difference with first non-orthologous sequence - M.jannaschii:185 P.pacificus:185

Q57981              	100.00%		H3G2E9              	100.00%
                    	       		H3G2F7              	31.88%
Bootstrap support for Q57981 as seed ortholog is 100%.
Bootstrap support for H3G2E9 as seed ortholog is 100%.

Group of orthologs #59. Best score 182 bits
Score difference with first non-orthologous sequence - M.jannaschii:182 P.pacificus:182

Q58108              	100.00%		H3ES59              	100.00%
Bootstrap support for Q58108 as seed ortholog is 100%.
Bootstrap support for H3ES59 as seed ortholog is 100%.

Group of orthologs #60. Best score 179 bits
Score difference with first non-orthologous sequence - M.jannaschii:179 P.pacificus:179

Q58722              	100.00%		H3F5A4              	100.00%
Bootstrap support for Q58722 as seed ortholog is 100%.
Bootstrap support for H3F5A4 as seed ortholog is 100%.

Group of orthologs #61. Best score 178 bits
Score difference with first non-orthologous sequence - M.jannaschii:178 P.pacificus:178

Q58670              	100.00%		H3FKD0              	100.00%
Bootstrap support for Q58670 as seed ortholog is 100%.
Bootstrap support for H3FKD0 as seed ortholog is 100%.

Group of orthologs #62. Best score 173 bits
Score difference with first non-orthologous sequence - M.jannaschii:55 P.pacificus:88

Q57896              	100.00%		H3F9M4              	100.00%
Bootstrap support for Q57896 as seed ortholog is 94%.
Bootstrap support for H3F9M4 as seed ortholog is 99%.

Group of orthologs #63. Best score 170 bits
Score difference with first non-orthologous sequence - M.jannaschii:170 P.pacificus:170

Q58277              	100.00%		H3E689              	100.00%
Bootstrap support for Q58277 as seed ortholog is 100%.
Bootstrap support for H3E689 as seed ortholog is 100%.

Group of orthologs #64. Best score 169 bits
Score difference with first non-orthologous sequence - M.jannaschii:169 P.pacificus:169

Q57962              	100.00%		H3DWS7              	100.00%
Bootstrap support for Q57962 as seed ortholog is 100%.
Bootstrap support for H3DWS7 as seed ortholog is 100%.

Group of orthologs #65. Best score 169 bits
Score difference with first non-orthologous sequence - M.jannaschii:169 P.pacificus:169

Q58643              	100.00%		H3F153              	100.00%
Bootstrap support for Q58643 as seed ortholog is 100%.
Bootstrap support for H3F153 as seed ortholog is 100%.

Group of orthologs #66. Best score 168 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pacificus:168

Q58516              	100.00%		H3F915              	100.00%
                    	       		H3FKX3              	68.30%
                    	       		H3EWL2              	8.77%
Bootstrap support for Q58516 as seed ortholog is 79%.
Bootstrap support for H3F915 as seed ortholog is 100%.

Group of orthologs #67. Best score 168 bits
Score difference with first non-orthologous sequence - M.jannaschii:168 P.pacificus:168

P54045              	100.00%		H3F510              	100.00%
Bootstrap support for P54045 as seed ortholog is 100%.
Bootstrap support for H3F510 as seed ortholog is 100%.

Group of orthologs #68. Best score 166 bits
Score difference with first non-orthologous sequence - M.jannaschii:166 P.pacificus:72

P54063              	100.00%		H3F686              	100.00%
                    	       		H3FTE8              	31.18%
                    	       		H3F2T6              	31.18%
                    	       		H3FEU1              	31.18%
                    	       		H3G0U9              	31.18%
                    	       		H3DVA6              	29.66%
                    	       		H3F506              	29.66%
                    	       		H3E743              	28.52%
                    	       		H3ERZ9              	28.52%
                    	       		H3F828              	27.00%
                    	       		H3E278              	23.19%
                    	       		H3ED71              	23.19%
                    	       		H3EJY0              	18.63%
                    	       		H3EXG4              	16.73%
                    	       		H3FAJ5              	16.35%
                    	       		H3EFF5              	14.83%
                    	       		H3FYL4              	14.07%
                    	       		H3FIF2              	12.17%
                    	       		H3FQW3              	11.03%
                    	       		H3FBT8              	9.51%
                    	       		H3E2L0              	8.37%
Bootstrap support for P54063 as seed ortholog is 100%.
Bootstrap support for H3F686 as seed ortholog is 99%.

Group of orthologs #69. Best score 165 bits
Score difference with first non-orthologous sequence - M.jannaschii:165 P.pacificus:72

Q58105              	100.00%		H3G3C6              	100.00%
Bootstrap support for Q58105 as seed ortholog is 100%.
Bootstrap support for H3G3C6 as seed ortholog is 98%.

Group of orthologs #70. Best score 164 bits
Score difference with first non-orthologous sequence - M.jannaschii:164 P.pacificus:164

Q58192              	100.00%		H3G0M1              	100.00%
                    	       		H3EY67              	88.54%
Bootstrap support for Q58192 as seed ortholog is 100%.
Bootstrap support for H3G0M1 as seed ortholog is 100%.

Group of orthologs #71. Best score 159 bits
Score difference with first non-orthologous sequence - M.jannaschii:159 P.pacificus:159

P60819              	100.00%		H3F4U2              	100.00%
Bootstrap support for P60819 as seed ortholog is 100%.
Bootstrap support for H3F4U2 as seed ortholog is 100%.

Group of orthologs #72. Best score 158 bits
Score difference with first non-orthologous sequence - M.jannaschii:158 P.pacificus:158

Q57725              	100.00%		H3ESP0              	100.00%
Bootstrap support for Q57725 as seed ortholog is 100%.
Bootstrap support for H3ESP0 as seed ortholog is 100%.

Group of orthologs #73. Best score 154 bits
Score difference with first non-orthologous sequence - M.jannaschii:154 P.pacificus:95

Q60343              	100.00%		H3FVA6              	100.00%
Bootstrap support for Q60343 as seed ortholog is 100%.
Bootstrap support for H3FVA6 as seed ortholog is 99%.

Group of orthologs #74. Best score 154 bits
Score difference with first non-orthologous sequence - M.jannaschii:154 P.pacificus:38

Q58524              	100.00%		H3G1A1              	100.00%
Bootstrap support for Q58524 as seed ortholog is 100%.
Bootstrap support for H3G1A1 as seed ortholog is 80%.

Group of orthologs #75. Best score 152 bits
Score difference with first non-orthologous sequence - M.jannaschii:152 P.pacificus:152

P54015              	100.00%		H3ENS0              	100.00%
Bootstrap support for P54015 as seed ortholog is 100%.
Bootstrap support for H3ENS0 as seed ortholog is 100%.

Group of orthologs #76. Best score 151 bits
Score difference with first non-orthologous sequence - M.jannaschii:151 P.pacificus:151

Q58058              	100.00%		H3DRJ6              	100.00%
                    	       		H3ESU2              	51.55%
Bootstrap support for Q58058 as seed ortholog is 100%.
Bootstrap support for H3DRJ6 as seed ortholog is 100%.

Group of orthologs #77. Best score 151 bits
Score difference with first non-orthologous sequence - M.jannaschii:151 P.pacificus:151

Q60317              	100.00%		H3FE38              	100.00%
Q58097              	21.43%		
Bootstrap support for Q60317 as seed ortholog is 100%.
Bootstrap support for H3FE38 as seed ortholog is 100%.

Group of orthologs #78. Best score 149 bits
Score difference with first non-orthologous sequence - M.jannaschii:149 P.pacificus:49

Q58237              	100.00%		H3FHM5              	100.00%
                    	       		H3FHD4              	37.69%
                    	       		H3FYC4              	36.68%
                    	       		H3FY78              	24.12%
                    	       		H3F5J8              	16.83%
Bootstrap support for Q58237 as seed ortholog is 100%.
Bootstrap support for H3FHM5 as seed ortholog is 96%.

Group of orthologs #79. Best score 149 bits
Score difference with first non-orthologous sequence - M.jannaschii:149 P.pacificus:81

Q58859              	100.00%		H3F2D9              	100.00%
Bootstrap support for Q58859 as seed ortholog is 100%.
Bootstrap support for H3F2D9 as seed ortholog is 97%.

Group of orthologs #80. Best score 149 bits
Score difference with first non-orthologous sequence - M.jannaschii:149 P.pacificus:149

Q57689              	100.00%		H3FCG0              	100.00%
Bootstrap support for Q57689 as seed ortholog is 100%.
Bootstrap support for H3FCG0 as seed ortholog is 100%.

Group of orthologs #81. Best score 148 bits
Score difference with first non-orthologous sequence - M.jannaschii:35 P.pacificus:100

Q58696              	100.00%		H3E8P7              	100.00%
Bootstrap support for Q58696 as seed ortholog is 77%.
Bootstrap support for H3E8P7 as seed ortholog is 98%.

Group of orthologs #82. Best score 146 bits
Score difference with first non-orthologous sequence - M.jannaschii:146 P.pacificus:2

Q57664              	100.00%		H3FAW4              	100.00%
                    	       		H3F5R6              	67.11%
Bootstrap support for Q57664 as seed ortholog is 100%.
Bootstrap support for H3FAW4 as seed ortholog is 49%.
Alternative seed ortholog is H3ESI3 (2 bits away from this cluster)

Group of orthologs #83. Best score 144 bits
Score difference with first non-orthologous sequence - M.jannaschii:144 P.pacificus:80

Q58639              	100.00%		H3F4W5              	100.00%
                    	       		H3ECV4              	37.20%
                    	       		H3FSD9              	29.67%
                    	       		H3FB74              	26.28%
                    	       		H3F070              	17.65%
                    	       		H3E1J6              	17.35%
                    	       		H3FPQ9              	16.50%
                    	       		H3DUQ5              	16.34%
                    	       		H3E980              	15.53%
                    	       		H3F2B2              	14.73%
                    	       		H3FPL4              	14.73%
                    	       		H3FSD4              	14.47%
                    	       		H3EFR2              	11.34%
                    	       		H3G0J7              	11.26%
                    	       		H3E7T7              	11.00%
                    	       		H3FGZ3              	5.46%
Bootstrap support for Q58639 as seed ortholog is 100%.
Bootstrap support for H3F4W5 as seed ortholog is 95%.

Group of orthologs #84. Best score 144 bits
Score difference with first non-orthologous sequence - M.jannaschii:144 P.pacificus:144

P54012              	100.00%		H3FQX9              	100.00%
Bootstrap support for P54012 as seed ortholog is 100%.
Bootstrap support for H3FQX9 as seed ortholog is 100%.

Group of orthologs #85. Best score 142 bits
Score difference with first non-orthologous sequence - M.jannaschii:142 P.pacificus:142

P54062              	100.00%		H3EGM1              	100.00%
Bootstrap support for P54062 as seed ortholog is 100%.
Bootstrap support for H3EGM1 as seed ortholog is 100%.

Group of orthologs #86. Best score 141 bits
Score difference with first non-orthologous sequence - M.jannaschii:141 P.pacificus:141

P54060              	100.00%		H3EXH8              	100.00%
                    	       		H3EZ72              	100.00%
                    	       		H3FKN8              	59.87%
Bootstrap support for P54060 as seed ortholog is 100%.
Bootstrap support for H3EXH8 as seed ortholog is 100%.
Bootstrap support for H3EZ72 as seed ortholog is 100%.

Group of orthologs #87. Best score 141 bits
Score difference with first non-orthologous sequence - M.jannaschii:84 P.pacificus:141

Q58558              	100.00%		H3E0W6              	100.00%
Bootstrap support for Q58558 as seed ortholog is 99%.
Bootstrap support for H3E0W6 as seed ortholog is 100%.

Group of orthologs #88. Best score 141 bits
Score difference with first non-orthologous sequence - M.jannaschii:76 P.pacificus:141

Q58234              	100.00%		H3E7G2              	100.00%
Bootstrap support for Q58234 as seed ortholog is 98%.
Bootstrap support for H3E7G2 as seed ortholog is 100%.

Group of orthologs #89. Best score 141 bits
Score difference with first non-orthologous sequence - M.jannaschii:141 P.pacificus:141

Q58406              	100.00%		H3F4W3              	100.00%
Bootstrap support for Q58406 as seed ortholog is 100%.
Bootstrap support for H3F4W3 as seed ortholog is 100%.

Group of orthologs #90. Best score 140 bits
Score difference with first non-orthologous sequence - M.jannaschii:140 P.pacificus:35

Q59056              	100.00%		H3ER30              	100.00%
                    	       		H3FGP6              	13.13%
                    	       		H3FET2              	10.77%
                    	       		H3E7K4              	10.41%
Bootstrap support for Q59056 as seed ortholog is 100%.
Bootstrap support for H3ER30 as seed ortholog is 90%.

Group of orthologs #91. Best score 138 bits
Score difference with first non-orthologous sequence - M.jannaschii:138 P.pacificus:138

Q57710              	100.00%		H3EW12              	100.00%
Bootstrap support for Q57710 as seed ortholog is 100%.
Bootstrap support for H3EW12 as seed ortholog is 100%.

Group of orthologs #92. Best score 137 bits
Score difference with first non-orthologous sequence - M.jannaschii:137 P.pacificus:137

Q58356              	100.00%		H3F9Y5              	100.00%
Bootstrap support for Q58356 as seed ortholog is 100%.
Bootstrap support for H3F9Y5 as seed ortholog is 100%.

Group of orthologs #93. Best score 134 bits
Score difference with first non-orthologous sequence - M.jannaschii:134 P.pacificus:134

Q58661              	100.00%		H3DVE9              	100.00%
                    	       		H3FJL0              	89.56%
                    	       		H3FC51              	34.07%
                    	       		H3EN54              	12.64%
Bootstrap support for Q58661 as seed ortholog is 100%.
Bootstrap support for H3DVE9 as seed ortholog is 100%.

Group of orthologs #94. Best score 134 bits
Score difference with first non-orthologous sequence - M.jannaschii:134 P.pacificus:134

P54037              	100.00%		H3DZB3              	100.00%
Bootstrap support for P54037 as seed ortholog is 100%.
Bootstrap support for H3DZB3 as seed ortholog is 100%.

Group of orthologs #95. Best score 134 bits
Score difference with first non-orthologous sequence - M.jannaschii:134 P.pacificus:134

Q58369              	100.00%		H3ENC0              	100.00%
Bootstrap support for Q58369 as seed ortholog is 100%.
Bootstrap support for H3ENC0 as seed ortholog is 100%.

Group of orthologs #96. Best score 133 bits
Score difference with first non-orthologous sequence - M.jannaschii:133 P.pacificus:70

Q58739              	100.00%		H3FFB3              	100.00%
Q60366              	23.84%		H3F8L2              	24.97%
Bootstrap support for Q58739 as seed ortholog is 100%.
Bootstrap support for H3FFB3 as seed ortholog is 94%.

Group of orthologs #97. Best score 132 bits
Score difference with first non-orthologous sequence - M.jannaschii:132 P.pacificus:132

P81291              	100.00%		H3EEH1              	100.00%
Q58409              	36.89%		
Bootstrap support for P81291 as seed ortholog is 100%.
Bootstrap support for H3EEH1 as seed ortholog is 100%.

Group of orthologs #98. Best score 132 bits
Score difference with first non-orthologous sequence - M.jannaschii:132 P.pacificus:34

Q57955              	100.00%		H3FBC7              	100.00%
Bootstrap support for Q57955 as seed ortholog is 100%.
Bootstrap support for H3FBC7 as seed ortholog is 79%.

Group of orthologs #99. Best score 131 bits
Score difference with first non-orthologous sequence - M.jannaschii:131 P.pacificus:14

Q58146              	100.00%		H3FY85              	100.00%
Bootstrap support for Q58146 as seed ortholog is 100%.
Bootstrap support for H3FY85 as seed ortholog is 67%.
Alternative seed ortholog is H3G191 (14 bits away from this cluster)

Group of orthologs #100. Best score 129 bits
Score difference with first non-orthologous sequence - M.jannaschii:62 P.pacificus:80

Q58501              	100.00%		H3EV38              	100.00%
Bootstrap support for Q58501 as seed ortholog is 95%.
Bootstrap support for H3EV38 as seed ortholog is 98%.

Group of orthologs #101. Best score 128 bits
Score difference with first non-orthologous sequence - M.jannaschii:128 P.pacificus:128

P54019              	100.00%		H3F594              	100.00%
Bootstrap support for P54019 as seed ortholog is 100%.
Bootstrap support for H3F594 as seed ortholog is 100%.

Group of orthologs #102. Best score 128 bits
Score difference with first non-orthologous sequence - M.jannaschii:128 P.pacificus:128

Q57663              	100.00%		H3F5Q1              	100.00%
Bootstrap support for Q57663 as seed ortholog is 100%.
Bootstrap support for H3F5Q1 as seed ortholog is 100%.

Group of orthologs #103. Best score 128 bits
Score difference with first non-orthologous sequence - M.jannaschii:128 P.pacificus:128

P54049              	100.00%		H3FJM0              	100.00%
Bootstrap support for P54049 as seed ortholog is 100%.
Bootstrap support for H3FJM0 as seed ortholog is 100%.

Group of orthologs #104. Best score 126 bits
Score difference with first non-orthologous sequence - M.jannaschii:126 P.pacificus:84

P54109              	100.00%		H3FS62              	100.00%
Bootstrap support for P54109 as seed ortholog is 100%.
Bootstrap support for H3FS62 as seed ortholog is 99%.

Group of orthologs #105. Best score 125 bits
Score difference with first non-orthologous sequence - M.jannaschii:125 P.pacificus:125

Q58761              	100.00%		H3F6Q4              	100.00%
Bootstrap support for Q58761 as seed ortholog is 100%.
Bootstrap support for H3F6Q4 as seed ortholog is 100%.

Group of orthologs #106. Best score 124 bits
Score difference with first non-orthologous sequence - M.jannaschii:124 P.pacificus:54

Q58339              	100.00%		H3EUS9              	100.00%
Bootstrap support for Q58339 as seed ortholog is 100%.
Bootstrap support for H3EUS9 as seed ortholog is 91%.

Group of orthologs #107. Best score 122 bits
Score difference with first non-orthologous sequence - M.jannaschii:122 P.pacificus:122

P54044              	100.00%		H3FJL1              	100.00%
Bootstrap support for P54044 as seed ortholog is 100%.
Bootstrap support for H3FJL1 as seed ortholog is 100%.

Group of orthologs #108. Best score 121 bits
Score difference with first non-orthologous sequence - M.jannaschii:121 P.pacificus:121

Q57935              	100.00%		H3FYF8              	100.00%
Q58433              	14.72%		H3F9F5              	89.99%
Bootstrap support for Q57935 as seed ortholog is 100%.
Bootstrap support for H3FYF8 as seed ortholog is 100%.

Group of orthologs #109. Best score 121 bits
Score difference with first non-orthologous sequence - M.jannaschii:121 P.pacificus:121

Q57963              	100.00%		H3DRH8              	100.00%
Bootstrap support for Q57963 as seed ortholog is 100%.
Bootstrap support for H3DRH8 as seed ortholog is 100%.

Group of orthologs #110. Best score 121 bits
Score difference with first non-orthologous sequence - M.jannaschii:121 P.pacificus:121

Q58435              	100.00%		H3FFJ8              	100.00%
Bootstrap support for Q58435 as seed ortholog is 100%.
Bootstrap support for H3FFJ8 as seed ortholog is 100%.

Group of orthologs #111. Best score 120 bits
Score difference with first non-orthologous sequence - M.jannaschii:120 P.pacificus:120

Q58694              	100.00%		H3FWE3              	100.00%
                    	       		H3EQ11              	35.81%
Bootstrap support for Q58694 as seed ortholog is 100%.
Bootstrap support for H3FWE3 as seed ortholog is 100%.

Group of orthologs #112. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pacificus:119

P54042              	100.00%		H3G1U6              	100.00%
                    	       		H3G1U8              	37.65%
Bootstrap support for P54042 as seed ortholog is 100%.
Bootstrap support for H3G1U6 as seed ortholog is 100%.

Group of orthologs #113. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pacificus:12

Q58771              	100.00%		H3F022              	100.00%
Bootstrap support for Q58771 as seed ortholog is 100%.
Bootstrap support for H3F022 as seed ortholog is 66%.
Alternative seed ortholog is H3EZT6 (12 bits away from this cluster)

Group of orthologs #114. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pacificus:119

P54043              	100.00%		H3FHA6              	100.00%
Bootstrap support for P54043 as seed ortholog is 100%.
Bootstrap support for H3FHA6 as seed ortholog is 100%.

Group of orthologs #115. Best score 119 bits
Score difference with first non-orthologous sequence - M.jannaschii:119 P.pacificus:119

P54034              	100.00%		H3FQS7              	100.00%
Bootstrap support for P54034 as seed ortholog is 100%.
Bootstrap support for H3FQS7 as seed ortholog is 100%.

Group of orthologs #116. Best score 118 bits
Score difference with first non-orthologous sequence - M.jannaschii:118 P.pacificus:75

P54057              	100.00%		H3ELM9              	100.00%
                    	       		H3EFK7              	30.51%
                    	       		H3FY47              	26.55%
                    	       		H3E064              	25.42%
                    	       		H3F2X9              	23.73%
                    	       		H3EG99              	21.47%
                    	       		H3G4C3              	15.82%
                    	       		H3F2Y0              	10.73%
                    	       		H3E993              	6.21%
                    	       		H3E4T7              	5.08%
Bootstrap support for P54057 as seed ortholog is 100%.
Bootstrap support for H3ELM9 as seed ortholog is 99%.

Group of orthologs #117. Best score 118 bits
Score difference with first non-orthologous sequence - M.jannaschii:118 P.pacificus:118

Q58032              	100.00%		H3EZR4              	100.00%
Bootstrap support for Q58032 as seed ortholog is 100%.
Bootstrap support for H3EZR4 as seed ortholog is 100%.

Group of orthologs #118. Best score 117 bits
Score difference with first non-orthologous sequence - M.jannaschii:117 P.pacificus:117

P54020              	100.00%		H3EHB8              	100.00%
                    	       		H3FEY1              	22.14%
                    	       		H3E9I6              	21.37%
Bootstrap support for P54020 as seed ortholog is 100%.
Bootstrap support for H3EHB8 as seed ortholog is 100%.

Group of orthologs #119. Best score 117 bits
Score difference with first non-orthologous sequence - M.jannaschii:117 P.pacificus:117

Q60346              	100.00%		H3G0R9              	100.00%
Bootstrap support for Q60346 as seed ortholog is 100%.
Bootstrap support for H3G0R9 as seed ortholog is 100%.

Group of orthologs #120. Best score 116 bits
Score difference with first non-orthologous sequence - M.jannaschii:116 P.pacificus:116

Q58070              	100.00%		H3EFS2              	100.00%
Bootstrap support for Q58070 as seed ortholog is 100%.
Bootstrap support for H3EFS2 as seed ortholog is 100%.

Group of orthologs #121. Best score 115 bits
Score difference with first non-orthologous sequence - M.jannaschii:115 P.pacificus:115

Q58998              	100.00%		H3EZT1              	100.00%
Bootstrap support for Q58998 as seed ortholog is 100%.
Bootstrap support for H3EZT1 as seed ortholog is 100%.

Group of orthologs #122. Best score 114 bits
Score difference with first non-orthologous sequence - M.jannaschii:114 P.pacificus:114

Q57697              	100.00%		H3EGQ2              	100.00%
Bootstrap support for Q57697 as seed ortholog is 100%.
Bootstrap support for H3EGQ2 as seed ortholog is 100%.

Group of orthologs #123. Best score 114 bits
Score difference with first non-orthologous sequence - M.jannaschii:58 P.pacificus:114

Q58509              	100.00%		H3EQU6              	100.00%
Bootstrap support for Q58509 as seed ortholog is 99%.
Bootstrap support for H3EQU6 as seed ortholog is 100%.

Group of orthologs #124. Best score 114 bits
Score difference with first non-orthologous sequence - M.jannaschii:114 P.pacificus:72

Q58810              	100.00%		H3EQ08              	100.00%
Bootstrap support for Q58810 as seed ortholog is 100%.
Bootstrap support for H3EQ08 as seed ortholog is 98%.

Group of orthologs #125. Best score 112 bits
Score difference with first non-orthologous sequence - M.jannaschii:112 P.pacificus:112

Q57581              	100.00%		H3E640              	100.00%
Bootstrap support for Q57581 as seed ortholog is 100%.
Bootstrap support for H3E640 as seed ortholog is 100%.

Group of orthologs #126. Best score 112 bits
Score difference with first non-orthologous sequence - M.jannaschii:60 P.pacificus:69

Q58874              	100.00%		H3EA32              	100.00%
Bootstrap support for Q58874 as seed ortholog is 91%.
Bootstrap support for H3EA32 as seed ortholog is 93%.

Group of orthologs #127. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pacificus:111

Q58429              	100.00%		H3FL58              	100.00%
                    	       		H3ED50              	81.70%
                    	       		H3DV12              	9.47%
                    	       		H3DV11              	8.83%
Bootstrap support for Q58429 as seed ortholog is 93%.
Bootstrap support for H3FL58 as seed ortholog is 100%.

Group of orthologs #128. Best score 111 bits
Score difference with first non-orthologous sequence - M.jannaschii:111 P.pacificus:11

Q58560              	100.00%		H3FF90              	100.00%
Bootstrap support for Q58560 as seed ortholog is 100%.
Bootstrap support for H3FF90 as seed ortholog is 68%.
Alternative seed ortholog is H3F2X4 (11 bits away from this cluster)

Group of orthologs #129. Best score 110 bits
Score difference with first non-orthologous sequence - M.jannaschii:110 P.pacificus:110

Q60358              	100.00%		H3DTM0              	100.00%
                    	       		H3EGU9              	19.60%
Bootstrap support for Q60358 as seed ortholog is 100%.
Bootstrap support for H3DTM0 as seed ortholog is 100%.

Group of orthologs #130. Best score 108 bits
Score difference with first non-orthologous sequence - M.jannaschii:29 P.pacificus:37

Q58967              	100.00%		H3E2T9              	100.00%
Bootstrap support for Q58967 as seed ortholog is 83%.
Bootstrap support for H3E2T9 as seed ortholog is 87%.

Group of orthologs #131. Best score 106 bits
Score difference with first non-orthologous sequence - M.jannaschii:106 P.pacificus:106

Q58080              	100.00%		H3EWF0              	100.00%
Q58296              	21.97%		
Bootstrap support for Q58080 as seed ortholog is 100%.
Bootstrap support for H3EWF0 as seed ortholog is 100%.

Group of orthologs #132. Best score 105 bits
Score difference with first non-orthologous sequence - M.jannaschii:105 P.pacificus:105

Q57638              	100.00%		H3EZZ4              	100.00%
Bootstrap support for Q57638 as seed ortholog is 100%.
Bootstrap support for H3EZZ4 as seed ortholog is 100%.

Group of orthologs #133. Best score 104 bits
Score difference with first non-orthologous sequence - M.jannaschii:104 P.pacificus:104

Q57675              	100.00%		H3F3E5              	100.00%
                    	       		H3FNX0              	36.62%
                    	       		H3EYW8              	35.04%
                    	       		H3G1E4              	32.35%
                    	       		H3EGM8              	29.72%
Bootstrap support for Q57675 as seed ortholog is 100%.
Bootstrap support for H3F3E5 as seed ortholog is 100%.

Group of orthologs #134. Best score 104 bits
Score difference with first non-orthologous sequence - M.jannaschii:104 P.pacificus:46

Q58065              	100.00%		H3FBH6              	100.00%
                    	       		H3G082              	45.88%
Bootstrap support for Q58065 as seed ortholog is 100%.
Bootstrap support for H3FBH6 as seed ortholog is 91%.

Group of orthologs #135. Best score 104 bits
Score difference with first non-orthologous sequence - M.jannaschii:104 P.pacificus:104

Q58515              	100.00%		H3E004              	100.00%
Bootstrap support for Q58515 as seed ortholog is 100%.
Bootstrap support for H3E004 as seed ortholog is 100%.

Group of orthologs #136. Best score 102 bits
Score difference with first non-orthologous sequence - M.jannaschii:102 P.pacificus:102

Q58086              	100.00%		H3F1K9              	100.00%
                    	       		H3F2G5              	15.15%
Bootstrap support for Q58086 as seed ortholog is 100%.
Bootstrap support for H3F1K9 as seed ortholog is 100%.

Group of orthologs #137. Best score 100 bits
Score difference with first non-orthologous sequence - M.jannaschii:21 P.pacificus:18

Q58488              	100.00%		H3E9J0              	100.00%
Q58903              	7.22%		H3F327              	54.07%
Q58418              	6.13%		H3EWI1              	52.09%
Q60350              	5.69%		H3FPQ6              	29.67%
                    	       		H3F710              	29.45%
                    	       		H3FGZ5              	27.91%
                    	       		H3FNW5              	27.91%
                    	       		H3EL68              	27.25%
                    	       		H3FNW8              	25.49%
                    	       		H3DUQ8              	24.84%
                    	       		H3DUQ9              	24.84%
                    	       		H3E3H0              	24.18%
                    	       		H3FUB9              	23.52%
                    	       		H3FIM9              	22.86%
                    	       		H3E3T1              	22.64%
                    	       		H3FY44              	22.64%
                    	       		H3FY45              	17.14%
                    	       		H3F680              	5.27%
Bootstrap support for Q58488 as seed ortholog is 72%.
Alternative seed ortholog is Q58663 (21 bits away from this cluster)
Bootstrap support for H3E9J0 as seed ortholog is 66%.
Alternative seed ortholog is H3EEW1 (18 bits away from this cluster)

Group of orthologs #138. Best score 99 bits
Score difference with first non-orthologous sequence - M.jannaschii:35 P.pacificus:42

Q57554              	100.00%		H3EX67              	100.00%
Q58283              	14.68%		H3FN70              	13.55%
Q58206              	5.32%		H3E9P9              	13.42%
                    	       		H3EPW6              	12.56%
                    	       		H3FIM8              	8.37%
                    	       		H3FE92              	7.02%
                    	       		H3G0J6              	6.77%
Bootstrap support for Q57554 as seed ortholog is 85%.
Bootstrap support for H3EX67 as seed ortholog is 86%.

Group of orthologs #139. Best score 96 bits
Score difference with first non-orthologous sequence - M.jannaschii:96 P.pacificus:96

Q58026              	100.00%		H3FFB5              	100.00%
                    	       		H3FFB7              	51.80%
Bootstrap support for Q58026 as seed ortholog is 100%.
Bootstrap support for H3FFB5 as seed ortholog is 100%.

Group of orthologs #140. Best score 96 bits
Score difference with first non-orthologous sequence - M.jannaschii:96 P.pacificus:5

Q58634              	100.00%		H3END1              	100.00%
Bootstrap support for Q58634 as seed ortholog is 100%.
Bootstrap support for H3END1 as seed ortholog is 59%.
Alternative seed ortholog is H3FRL4 (5 bits away from this cluster)

Group of orthologs #141. Best score 96 bits
Score difference with first non-orthologous sequence - M.jannaschii:96 P.pacificus:19

Q58725              	100.00%		H3EPP5              	100.00%
Bootstrap support for Q58725 as seed ortholog is 100%.
Bootstrap support for H3EPP5 as seed ortholog is 72%.
Alternative seed ortholog is H3EPM7 (19 bits away from this cluster)

Group of orthologs #142. Best score 93 bits
Score difference with first non-orthologous sequence - M.jannaschii:93 P.pacificus:93

P54016              	100.00%		H3FNB8              	100.00%
Bootstrap support for P54016 as seed ortholog is 100%.
Bootstrap support for H3FNB8 as seed ortholog is 100%.

Group of orthologs #143. Best score 92 bits
Score difference with first non-orthologous sequence - M.jannaschii:92 P.pacificus:92

Q58030              	100.00%		H3DTU2              	100.00%
Bootstrap support for Q58030 as seed ortholog is 100%.
Bootstrap support for H3DTU2 as seed ortholog is 100%.

Group of orthologs #144. Best score 88 bits
Score difference with first non-orthologous sequence - M.jannaschii:88 P.pacificus:88

P54033              	100.00%		H3ESF6              	100.00%
Bootstrap support for P54033 as seed ortholog is 100%.
Bootstrap support for H3ESF6 as seed ortholog is 100%.

Group of orthologs #145. Best score 88 bits
Score difference with first non-orthologous sequence - M.jannaschii:88 P.pacificus:88

P54038              	100.00%		H3FG27              	100.00%
Bootstrap support for P54038 as seed ortholog is 100%.
Bootstrap support for H3FG27 as seed ortholog is 100%.

Group of orthologs #146. Best score 88 bits
Score difference with first non-orthologous sequence - M.jannaschii:88 P.pacificus:88

Q58597              	100.00%		H3FVH0              	100.00%
Bootstrap support for Q58597 as seed ortholog is 100%.
Bootstrap support for H3FVH0 as seed ortholog is 100%.

Group of orthologs #147. Best score 87 bits
Score difference with first non-orthologous sequence - M.jannaschii:87 P.pacificus:16

Q60176              	100.00%		H3FCC2              	100.00%
Bootstrap support for Q60176 as seed ortholog is 100%.
Bootstrap support for H3FCC2 as seed ortholog is 66%.
Alternative seed ortholog is H3FGP4 (16 bits away from this cluster)

Group of orthologs #148. Best score 86 bits
Score difference with first non-orthologous sequence - M.jannaschii:86 P.pacificus:86

Q58885              	100.00%		H3ECX5              	100.00%
                    	       		H3ECX4              	25.18%
Bootstrap support for Q58885 as seed ortholog is 100%.
Bootstrap support for H3ECX5 as seed ortholog is 100%.

Group of orthologs #149. Best score 86 bits
Score difference with first non-orthologous sequence - M.jannaschii:86 P.pacificus:86

Q58767              	100.00%		H3F651              	100.00%
Bootstrap support for Q58767 as seed ortholog is 100%.
Bootstrap support for H3F651 as seed ortholog is 100%.

Group of orthologs #150. Best score 85 bits
Score difference with first non-orthologous sequence - M.jannaschii:85 P.pacificus:85

Q58944              	100.00%		H3F6X9              	100.00%
                    	       		H3DYX6              	10.42%
                    	       		H3EJX5              	6.87%
Bootstrap support for Q58944 as seed ortholog is 100%.
Bootstrap support for H3F6X9 as seed ortholog is 100%.

Group of orthologs #151. Best score 85 bits
Score difference with first non-orthologous sequence - M.jannaschii:85 P.pacificus:85

Q58011              	100.00%		H3DYT2              	100.00%
Bootstrap support for Q58011 as seed ortholog is 100%.
Bootstrap support for H3DYT2 as seed ortholog is 100%.

Group of orthologs #152. Best score 85 bits
Score difference with first non-orthologous sequence - M.jannaschii:85 P.pacificus:85

P54051              	100.00%		H3FJL8              	100.00%
Bootstrap support for P54051 as seed ortholog is 100%.
Bootstrap support for H3FJL8 as seed ortholog is 100%.

Group of orthologs #153. Best score 85 bits
Score difference with first non-orthologous sequence - M.jannaschii:85 P.pacificus:85

Q60335              	100.00%		H3FRS7              	100.00%
Bootstrap support for Q60335 as seed ortholog is 100%.
Bootstrap support for H3FRS7 as seed ortholog is 100%.

Group of orthologs #154. Best score 83 bits
Score difference with first non-orthologous sequence - M.jannaschii:83 P.pacificus:83

Q58370              	100.00%		H3F5G0              	100.00%
Bootstrap support for Q58370 as seed ortholog is 100%.
Bootstrap support for H3F5G0 as seed ortholog is 100%.

Group of orthologs #155. Best score 82 bits
Score difference with first non-orthologous sequence - M.jannaschii:82 P.pacificus:82

P54047              	100.00%		H3E638              	100.00%
Bootstrap support for P54047 as seed ortholog is 100%.
Bootstrap support for H3E638 as seed ortholog is 100%.

Group of orthologs #156. Best score 82 bits
Score difference with first non-orthologous sequence - M.jannaschii:82 P.pacificus:82

Q58728              	100.00%		H3E9S2              	100.00%
Bootstrap support for Q58728 as seed ortholog is 100%.
Bootstrap support for H3E9S2 as seed ortholog is 100%.

Group of orthologs #157. Best score 81 bits
Score difference with first non-orthologous sequence - M.jannaschii:81 P.pacificus:81

Q58338              	100.00%		H3FG06              	100.00%
Bootstrap support for Q58338 as seed ortholog is 100%.
Bootstrap support for H3FG06 as seed ortholog is 100%.

Group of orthologs #158. Best score 79 bits
Score difference with first non-orthologous sequence - M.jannaschii:79 P.pacificus:79

Q58497              	100.00%		H3F071              	100.00%
                    	       		H3EIG3              	54.41%
                    	       		H3ETF3              	44.01%
Bootstrap support for Q58497 as seed ortholog is 100%.
Bootstrap support for H3F071 as seed ortholog is 100%.

Group of orthologs #159. Best score 79 bits
Score difference with first non-orthologous sequence - M.jannaschii:79 P.pacificus:79

Q57977              	100.00%		H3EX52              	100.00%
Bootstrap support for Q57977 as seed ortholog is 100%.
Bootstrap support for H3EX52 as seed ortholog is 100%.

Group of orthologs #160. Best score 77 bits
Score difference with first non-orthologous sequence - M.jannaschii:77 P.pacificus:77

P54030              	100.00%		H3F4S2              	100.00%
                    	       		H3F2M3              	71.65%
                    	       		H3FLK2              	59.06%
                    	       		H3EHH7              	55.12%
                    	       		H3FQ56              	51.57%
                    	       		H3G3U4              	51.18%
                    	       		H3F7A0              	50.39%
                    	       		H3F8M8              	47.64%
                    	       		H3FDA4              	43.31%
                    	       		H3EX96              	42.91%
                    	       		H3ECA5              	34.65%
                    	       		H3F3R6              	32.28%
                    	       		H3E7A5              	23.23%
                    	       		H3EHI6              	12.99%
Bootstrap support for P54030 as seed ortholog is 100%.
Bootstrap support for H3F4S2 as seed ortholog is 100%.

Group of orthologs #161. Best score 77 bits
Score difference with first non-orthologous sequence - M.jannaschii:77 P.pacificus:77

Q58276              	100.00%		H3DWV0              	100.00%
Bootstrap support for Q58276 as seed ortholog is 100%.
Bootstrap support for H3DWV0 as seed ortholog is 100%.

Group of orthologs #162. Best score 77 bits
Score difference with first non-orthologous sequence - M.jannaschii:77 P.pacificus:77

Q57648              	100.00%		H3E9U3              	100.00%
Bootstrap support for Q57648 as seed ortholog is 100%.
Bootstrap support for H3E9U3 as seed ortholog is 100%.

Group of orthologs #163. Best score 75 bits
Score difference with first non-orthologous sequence - M.jannaschii:75 P.pacificus:75

Q58513              	100.00%		H3F9Y6              	100.00%
Bootstrap support for Q58513 as seed ortholog is 100%.
Bootstrap support for H3F9Y6 as seed ortholog is 100%.

Group of orthologs #164. Best score 73 bits
Score difference with first non-orthologous sequence - M.jannaschii:73 P.pacificus:29

Q57891              	100.00%		H3E319              	100.00%
                    	       		H3F9E3              	100.00%
                    	       		H3ED53              	28.38%
                    	       		H3F1F8              	28.38%
Bootstrap support for Q57891 as seed ortholog is 100%.
Bootstrap support for H3E319 as seed ortholog is 70%.
Alternative seed ortholog is H3DTX3 (29 bits away from this cluster)
Bootstrap support for H3F9E3 as seed ortholog is 74%.
Alternative seed ortholog is H3DTX3 (29 bits away from this cluster)

Group of orthologs #165. Best score 73 bits
Score difference with first non-orthologous sequence - M.jannaschii:73 P.pacificus:73

Q58936              	100.00%		H3FZF3              	100.00%
Bootstrap support for Q58936 as seed ortholog is 100%.
Bootstrap support for H3FZF3 as seed ortholog is 100%.

Group of orthologs #166. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pacificus:72

P61159              	100.00%		H3F0U4              	100.00%
Q60314              	15.33%		
Bootstrap support for P61159 as seed ortholog is 100%.
Bootstrap support for H3F0U4 as seed ortholog is 100%.

Group of orthologs #167. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pacificus:72

Q58860              	100.00%		H3FKL4              	100.00%
                    	       		H3FW53              	34.54%
Bootstrap support for Q58860 as seed ortholog is 100%.
Bootstrap support for H3FKL4 as seed ortholog is 100%.

Group of orthologs #168. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pacificus:72

Q57562              	100.00%		H3EEF3              	100.00%
Bootstrap support for Q57562 as seed ortholog is 100%.
Bootstrap support for H3EEF3 as seed ortholog is 100%.

Group of orthologs #169. Best score 72 bits
Score difference with first non-orthologous sequence - M.jannaschii:72 P.pacificus:72

P54061              	100.00%		H3FYD2              	100.00%
Bootstrap support for P54061 as seed ortholog is 100%.
Bootstrap support for H3FYD2 as seed ortholog is 100%.

Group of orthologs #170. Best score 71 bits
Score difference with first non-orthologous sequence - M.jannaschii:71 P.pacificus:71

Q57568              	100.00%		H3EV13              	100.00%
                    	       		H3FNP7              	100.00%
                    	       		H3EV14              	45.15%
                    	       		H3FNP9              	35.61%
                    	       		H3EV11              	32.53%
                    	       		H3F475              	29.38%
                    	       		H3ELB0              	26.95%
                    	       		H3G151              	24.64%
                    	       		H3EUB3              	23.79%
                    	       		H3G155              	23.74%
                    	       		H3G157              	23.37%
                    	       		H3F8B2              	22.17%
                    	       		H3G147              	15.18%
                    	       		H3EUC2              	8.30%
                    	       		H3EUB9              	5.84%
Bootstrap support for Q57568 as seed ortholog is 100%.
Bootstrap support for H3EV13 as seed ortholog is 100%.
Bootstrap support for H3FNP7 as seed ortholog is 100%.

Group of orthologs #171. Best score 70 bits
Score difference with first non-orthologous sequence - M.jannaschii:70 P.pacificus:70

Q57885              	100.00%		H3EW75              	100.00%
Bootstrap support for Q57885 as seed ortholog is 100%.
Bootstrap support for H3EW75 as seed ortholog is 100%.

Group of orthologs #172. Best score 69 bits
Score difference with first non-orthologous sequence - M.jannaschii:69 P.pacificus:69

Q57603              	100.00%		H3EWX4              	100.00%
                    	       		H3FAV5              	32.18%
                    	       		H3FBV6              	25.29%
                    	       		H3EP52              	23.18%
                    	       		H3F003              	23.18%
                    	       		H3FBB1              	19.73%
                    	       		H3F4P8              	18.97%
                    	       		H3FDU5              	12.45%
Bootstrap support for Q57603 as seed ortholog is 100%.
Bootstrap support for H3EWX4 as seed ortholog is 100%.

Group of orthologs #173. Best score 69 bits
Score difference with first non-orthologous sequence - M.jannaschii:69 P.pacificus:69

Q58270              	100.00%		H3E1E7              	100.00%
Bootstrap support for Q58270 as seed ortholog is 100%.
Bootstrap support for H3E1E7 as seed ortholog is 100%.

Group of orthologs #174. Best score 69 bits
Score difference with first non-orthologous sequence - M.jannaschii:69 P.pacificus:69

Q58588              	100.00%		H3FHD7              	100.00%
Bootstrap support for Q58588 as seed ortholog is 100%.
Bootstrap support for H3FHD7 as seed ortholog is 100%.

Group of orthologs #175. Best score 68 bits
Score difference with first non-orthologous sequence - M.jannaschii:68 P.pacificus:68

Q58040              	100.00%		H3DTJ4              	100.00%
Bootstrap support for Q58040 as seed ortholog is 100%.
Bootstrap support for H3DTJ4 as seed ortholog is 100%.

Group of orthologs #176. Best score 68 bits
Score difference with first non-orthologous sequence - M.jannaschii:68 P.pacificus:68

Q57631              	100.00%		H3DY98              	100.00%
Bootstrap support for Q57631 as seed ortholog is 100%.
Bootstrap support for H3DY98 as seed ortholog is 100%.

Group of orthologs #177. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pacificus:67

Q58909              	100.00%		H3E6C9              	100.00%
                    	       		H3E6C8              	35.06%
                    	       		H3DRR2              	12.75%
Bootstrap support for Q58909 as seed ortholog is 100%.
Bootstrap support for H3E6C9 as seed ortholog is 100%.

Group of orthologs #178. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pacificus:67

Q58216              	100.00%		H3FH54              	100.00%
                    	       		H3EQ95              	72.93%
Bootstrap support for Q58216 as seed ortholog is 100%.
Bootstrap support for H3FH54 as seed ortholog is 100%.

Group of orthologs #179. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pacificus:67

P54010              	100.00%		H3DVP1              	100.00%
Bootstrap support for P54010 as seed ortholog is 100%.
Bootstrap support for H3DVP1 as seed ortholog is 100%.

Group of orthologs #180. Best score 67 bits
Score difference with first non-orthologous sequence - M.jannaschii:67 P.pacificus:67

Q57846              	100.00%		H3FWC6              	100.00%
Bootstrap support for Q57846 as seed ortholog is 100%.
Bootstrap support for H3FWC6 as seed ortholog is 100%.

Group of orthologs #181. Best score 64 bits
Score difference with first non-orthologous sequence - M.jannaschii:64 P.pacificus:64

P54011              	100.00%		H3G0B9              	100.00%
                    	       		H3EBS5              	43.97%
                    	       		H3FEP1              	42.55%
                    	       		H3F700              	38.30%
                    	       		H3ENX1              	38.30%
                    	       		H3F3D5              	37.59%
                    	       		H3DUU6              	36.88%
                    	       		H3FFY7              	36.17%
                    	       		H3E8Z8              	34.04%
Bootstrap support for P54011 as seed ortholog is 100%.
Bootstrap support for H3G0B9 as seed ortholog is 100%.

Group of orthologs #182. Best score 63 bits
Score difference with first non-orthologous sequence - M.jannaschii:63 P.pacificus:63

Q58916              	100.00%		H3E872              	100.00%
Q60362              	100.00%		H3DSR6              	100.00%
                    	       		H3F3B1              	100.00%
                    	       		H3E756              	45.23%
                    	       		H3E3B8              	43.58%
                    	       		H3EYJ7              	41.63%
                    	       		H3DZV8              	29.47%
                    	       		H3F8N3              	26.26%
                    	       		H3ES82              	10.70%
Bootstrap support for Q58916 as seed ortholog is 100%.
Bootstrap support for Q60362 as seed ortholog is 100%.
Bootstrap support for H3E872 as seed ortholog is 100%.
Bootstrap support for H3DSR6 as seed ortholog is 100%.
Bootstrap support for H3F3B1 as seed ortholog is 100%.

Group of orthologs #183. Best score 63 bits
Score difference with first non-orthologous sequence - M.jannaschii:63 P.pacificus:63

Q57950              	100.00%		H3EPR5              	100.00%
Bootstrap support for Q57950 as seed ortholog is 100%.
Bootstrap support for H3EPR5 as seed ortholog is 100%.

Group of orthologs #184. Best score 63 bits
Score difference with first non-orthologous sequence - M.jannaschii:63 P.pacificus:63

Q58093              	100.00%		H3EQS1              	100.00%
Bootstrap support for Q58093 as seed ortholog is 100%.
Bootstrap support for H3EQS1 as seed ortholog is 100%.

Group of orthologs #185. Best score 62 bits
Score difference with first non-orthologous sequence - M.jannaschii:62 P.pacificus:62

Q60182              	100.00%		H3E758              	100.00%
                    	       		H3EPA5              	79.42%
                    	       		H3EKK7              	53.47%
                    	       		H3E7P5              	52.69%
                    	       		H3E0L6              	52.42%
                    	       		H3E7P8              	38.27%
                    	       		H3DSS3              	36.96%
Bootstrap support for Q60182 as seed ortholog is 100%.
Bootstrap support for H3E758 as seed ortholog is 100%.

Group of orthologs #186. Best score 62 bits
Score difference with first non-orthologous sequence - M.jannaschii:62 P.pacificus:62

P54067              	100.00%		H3EYG7              	100.00%
Bootstrap support for P54067 as seed ortholog is 100%.
Bootstrap support for H3EYG7 as seed ortholog is 100%.

Group of orthologs #187. Best score 62 bits
Score difference with first non-orthologous sequence - M.jannaschii:62 P.pacificus:62

P54059              	100.00%		H3F9N6              	100.00%
Bootstrap support for P54059 as seed ortholog is 100%.
Bootstrap support for H3F9N6 as seed ortholog is 100%.

Group of orthologs #188. Best score 61 bits
Score difference with first non-orthologous sequence - M.jannaschii:61 P.pacificus:61

Q57753              	100.00%		H3EUH5              	100.00%
                    	       		H3FVM5              	14.84%
                    	       		H3FG02              	14.13%
                    	       		H3G0B7              	12.80%
                    	       		H3FJB0              	11.73%
                    	       		H3E4X2              	10.93%
                    	       		H3FPJ4              	8.98%
Bootstrap support for Q57753 as seed ortholog is 100%.
Bootstrap support for H3EUH5 as seed ortholog is 100%.

Group of orthologs #189. Best score 61 bits
Score difference with first non-orthologous sequence - M.jannaschii:61 P.pacificus:61

P54027              	100.00%		H3EEL1              	100.00%
Bootstrap support for P54027 as seed ortholog is 100%.
Bootstrap support for H3EEL1 as seed ortholog is 100%.

Group of orthologs #190. Best score 61 bits
Score difference with first non-orthologous sequence - M.jannaschii:61 P.pacificus:7

Q58741              	100.00%		H3EEC1              	100.00%
Bootstrap support for Q58741 as seed ortholog is 100%.
Bootstrap support for H3EEC1 as seed ortholog is 56%.
Alternative seed ortholog is H3DZ83 (7 bits away from this cluster)

Group of orthologs #191. Best score 60 bits
Score difference with first non-orthologous sequence - M.jannaschii:60 P.pacificus:60

Q60179              	100.00%		H3EDI6              	100.00%
                    	       		H3ES05              	58.59%
Bootstrap support for Q60179 as seed ortholog is 100%.
Bootstrap support for H3EDI6 as seed ortholog is 100%.

Group of orthologs #192. Best score 59 bits
Score difference with first non-orthologous sequence - M.jannaschii:59 P.pacificus:59

Q58892              	100.00%		H3DX40              	100.00%
                    	       		H3DX41              	51.88%
Bootstrap support for Q58892 as seed ortholog is 100%.
Bootstrap support for H3DX40 as seed ortholog is 100%.

Group of orthologs #193. Best score 59 bits
Score difference with first non-orthologous sequence - M.jannaschii:59 P.pacificus:59

Q58092              	100.00%		H3FUS1              	100.00%
                    	       		H3E902              	20.06%
Bootstrap support for Q58092 as seed ortholog is 100%.
Bootstrap support for H3FUS1 as seed ortholog is 100%.

Group of orthologs #194. Best score 59 bits
Score difference with first non-orthologous sequence - M.jannaschii:59 P.pacificus:59

Q57840              	100.00%		H3E691              	100.00%
Bootstrap support for Q57840 as seed ortholog is 100%.
Bootstrap support for H3E691 as seed ortholog is 100%.

Group of orthologs #195. Best score 58 bits
Score difference with first non-orthologous sequence - M.jannaschii:58 P.pacificus:58

P54009              	100.00%		H3FZX9              	100.00%
Bootstrap support for P54009 as seed ortholog is 100%.
Bootstrap support for H3FZX9 as seed ortholog is 100%.

Group of orthologs #196. Best score 57 bits
Score difference with first non-orthologous sequence - M.jannaschii:13 P.pacificus:14

Q58298              	100.00%		H3DRM3              	100.00%
                    	       		H3FIV7              	36.81%
Bootstrap support for Q58298 as seed ortholog is 63%.
Alternative seed ortholog is Q58142 (13 bits away from this cluster)
Bootstrap support for H3DRM3 as seed ortholog is 64%.
Alternative seed ortholog is H3EES6 (14 bits away from this cluster)

Group of orthologs #197. Best score 57 bits
Score difference with first non-orthologous sequence - M.jannaschii:57 P.pacificus:57

P54065              	100.00%		A6YNJ5              	100.00%
Bootstrap support for P54065 as seed ortholog is 100%.
Bootstrap support for A6YNJ5 as seed ortholog is 100%.

Group of orthologs #198. Best score 57 bits
Score difference with first non-orthologous sequence - M.jannaschii:57 P.pacificus:57

Q58325              	100.00%		H3DYL9              	100.00%
Bootstrap support for Q58325 as seed ortholog is 100%.
Bootstrap support for H3DYL9 as seed ortholog is 100%.

Group of orthologs #199. Best score 57 bits
Score difference with first non-orthologous sequence - M.jannaschii:57 P.pacificus:57

Q60363              	100.00%		H3G380              	100.00%
Bootstrap support for Q60363 as seed ortholog is 100%.
Bootstrap support for H3G380 as seed ortholog is 100%.

Group of orthologs #200. Best score 56 bits
Score difference with first non-orthologous sequence - M.jannaschii:56 P.pacificus:56

Q58622              	100.00%		H3FAD3              	100.00%
Q58799              	5.75%		H3FBM8              	19.42%
                    	       		H3FVG3              	18.12%
Bootstrap support for Q58622 as seed ortholog is 100%.
Bootstrap support for H3FAD3 as seed ortholog is 100%.

Group of orthologs #201. Best score 56 bits
Score difference with first non-orthologous sequence - M.jannaschii:56 P.pacificus:56

P54110              	100.00%		H3E5C0              	100.00%
Bootstrap support for P54110 as seed ortholog is 100%.
Bootstrap support for H3E5C0 as seed ortholog is 100%.

Group of orthologs #202. Best score 56 bits
Score difference with first non-orthologous sequence - M.jannaschii:56 P.pacificus:56

Q60357              	100.00%		H3ESI6              	100.00%
Bootstrap support for Q60357 as seed ortholog is 100%.
Bootstrap support for H3ESI6 as seed ortholog is 100%.

Group of orthologs #203. Best score 56 bits
Score difference with first non-orthologous sequence - M.jannaschii:56 P.pacificus:56

Q57679              	100.00%		H3F8X0              	100.00%
Bootstrap support for Q57679 as seed ortholog is 100%.
Bootstrap support for H3F8X0 as seed ortholog is 100%.

Group of orthologs #204. Best score 55 bits
Score difference with first non-orthologous sequence - M.jannaschii:55 P.pacificus:55

P54036              	100.00%		H3EGX2              	100.00%
Bootstrap support for P54036 as seed ortholog is 100%.
Bootstrap support for H3EGX2 as seed ortholog is 100%.

Group of orthologs #205. Best score 55 bits
Score difference with first non-orthologous sequence - M.jannaschii:55 P.pacificus:55

Q58977              	100.00%		H3EJG6              	100.00%
Bootstrap support for Q58977 as seed ortholog is 100%.
Bootstrap support for H3EJG6 as seed ortholog is 100%.

Group of orthologs #206. Best score 54 bits
Score difference with first non-orthologous sequence - M.jannaschii:54 P.pacificus:54

Q57842              	100.00%		H3FK94              	100.00%
Q58500              	13.65%		H3FS39              	65.88%
                    	       		H3FJ77              	52.70%
                    	       		H3FJB6              	51.18%
                    	       		H3EFS7              	50.05%
                    	       		H3FAQ9              	43.79%
Bootstrap support for Q57842 as seed ortholog is 100%.
Bootstrap support for H3FK94 as seed ortholog is 100%.

Group of orthologs #207. Best score 53 bits
Score difference with first non-orthologous sequence - M.jannaschii:53 P.pacificus:53

Q57649              	100.00%		H3FFR1              	100.00%
Bootstrap support for Q57649 as seed ortholog is 100%.
Bootstrap support for H3FFR1 as seed ortholog is 100%.

Group of orthologs #208. Best score 52 bits
Score difference with first non-orthologous sequence - M.jannaschii:52 P.pacificus:52

P54046              	100.00%		H3E664              	100.00%
Bootstrap support for P54046 as seed ortholog is 100%.
Bootstrap support for H3E664 as seed ortholog is 100%.

Group of orthologs #209. Best score 52 bits
Score difference with first non-orthologous sequence - M.jannaschii:52 P.pacificus:52

P54053              	100.00%		H3F4X1              	100.00%
Bootstrap support for P54053 as seed ortholog is 100%.
Bootstrap support for H3F4X1 as seed ortholog is 100%.

Group of orthologs #210. Best score 52 bits
Score difference with first non-orthologous sequence - M.jannaschii:52 P.pacificus:52

Q58103              	100.00%		H3FUS0              	100.00%
Bootstrap support for Q58103 as seed ortholog is 100%.
Bootstrap support for H3FUS0 as seed ortholog is 100%.

Group of orthologs #211. Best score 51 bits
Score difference with first non-orthologous sequence - M.jannaschii:51 P.pacificus:51

O06917              	100.00%		H3G203              	100.00%
Q57711              	20.03%		
Q58350              	19.34%		
Q58823              	6.91%		
Bootstrap support for O06917 as seed ortholog is 100%.
Bootstrap support for H3G203 as seed ortholog is 100%.

Group of orthologs #212. Best score 50 bits
Score difference with first non-orthologous sequence - M.jannaschii:50 P.pacificus:50

Q57926              	100.00%		H3FNC7              	100.00%
Q58595              	43.08%		
Q58787              	42.29%		
Bootstrap support for Q57926 as seed ortholog is 100%.
Bootstrap support for H3FNC7 as seed ortholog is 100%.

Group of orthologs #213. Best score 50 bits
Score difference with first non-orthologous sequence - M.jannaschii:50 P.pacificus:2

Q57752              	100.00%		H3DSM7              	100.00%
Bootstrap support for Q57752 as seed ortholog is 100%.
Bootstrap support for H3DSM7 as seed ortholog is 47%.
Alternative seed ortholog is H3EIY2 (2 bits away from this cluster)

Group of orthologs #214. Best score 50 bits
Score difference with first non-orthologous sequence - M.jannaschii:50 P.pacificus:50

Q60354              	100.00%		H3DWG2              	100.00%
Bootstrap support for Q60354 as seed ortholog is 100%.
Bootstrap support for H3DWG2 as seed ortholog is 100%.

Group of orthologs #215. Best score 50 bits
Score difference with first non-orthologous sequence - M.jannaschii:50 P.pacificus:50

P54056              	100.00%		H3E5B2              	100.00%
Bootstrap support for P54056 as seed ortholog is 100%.
Bootstrap support for H3E5B2 as seed ortholog is 100%.

Group of orthologs #216. Best score 49 bits
Score difference with first non-orthologous sequence - M.jannaschii:49 P.pacificus:49

Q58796              	100.00%		H3FZT2              	100.00%
                    	       		H3EFM0              	15.44%
                    	       		H3FT43              	9.11%
                    	       		H3E2U5              	8.46%
                    	       		H3EZZ8              	6.98%
                    	       		H3FRL8              	6.27%
Bootstrap support for Q58796 as seed ortholog is 100%.
Bootstrap support for H3FZT2 as seed ortholog is 100%.

Group of orthologs #217. Best score 49 bits
Score difference with first non-orthologous sequence - M.jannaschii:49 P.pacificus:49

P54013              	100.00%		H3DYK2              	100.00%
Bootstrap support for P54013 as seed ortholog is 100%.
Bootstrap support for H3DYK2 as seed ortholog is 100%.

Group of orthologs #218. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pacificus:47

Q58414              	100.00%		H3DSH8              	100.00%
                    	       		H3G3V0              	53.56%
                    	       		H3FBV5              	42.61%
                    	       		H3FUV5              	35.88%
Bootstrap support for Q58414 as seed ortholog is 100%.
Bootstrap support for H3DSH8 as seed ortholog is 100%.

Group of orthologs #219. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pacificus:47

Q58461              	100.00%		H3E8I8              	100.00%
                    	       		H3FRQ7              	27.00%
                    	       		H3G108              	24.24%
                    	       		H3FNZ3              	17.85%
Bootstrap support for Q58461 as seed ortholog is 100%.
Bootstrap support for H3E8I8 as seed ortholog is 100%.

Group of orthologs #220. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:2 P.pacificus:47

Q58459              	100.00%		H3FYD3              	100.00%
                    	       		H3G192              	11.61%
Bootstrap support for Q58459 as seed ortholog is 46%.
Alternative seed ortholog is Q58577 (2 bits away from this cluster)
Bootstrap support for H3FYD3 as seed ortholog is 100%.

Group of orthologs #221. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pacificus:47

Q58819              	100.00%		H3EPE9              	100.00%
Bootstrap support for Q58819 as seed ortholog is 100%.
Bootstrap support for H3EPE9 as seed ortholog is 100%.

Group of orthologs #222. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pacificus:47

Q57899              	100.00%		H3F546              	100.00%
Bootstrap support for Q57899 as seed ortholog is 100%.
Bootstrap support for H3F546 as seed ortholog is 100%.

Group of orthologs #223. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pacificus:47

Q58113              	100.00%		H3F6M0              	100.00%
Bootstrap support for Q58113 as seed ortholog is 100%.
Bootstrap support for H3F6M0 as seed ortholog is 100%.

Group of orthologs #224. Best score 47 bits
Score difference with first non-orthologous sequence - M.jannaschii:47 P.pacificus:47

Q57849              	100.00%		H3FFZ4              	100.00%
Bootstrap support for Q57849 as seed ortholog is 100%.
Bootstrap support for H3FFZ4 as seed ortholog is 100%.

Group of orthologs #225. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pacificus:45

P54028              	100.00%		A6YNH6              	100.00%
                    	       		H3EID5              	84.17%
Bootstrap support for P54028 as seed ortholog is 100%.
Bootstrap support for A6YNH6 as seed ortholog is 100%.

Group of orthologs #226. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pacificus:45

Q58352              	100.00%		H3FNB5              	100.00%
                    	       		H3DU89              	10.54%
Bootstrap support for Q58352 as seed ortholog is 100%.
Bootstrap support for H3FNB5 as seed ortholog is 100%.

Group of orthologs #227. Best score 45 bits
Score difference with first non-orthologous sequence - M.jannaschii:45 P.pacificus:2

Q58735              	100.00%		H3EE98              	100.00%
Bootstrap support for Q58735 as seed ortholog is 100%.
Bootstrap support for H3EE98 as seed ortholog is 53%.
Alternative seed ortholog is H3FBK1 (2 bits away from this cluster)

Group of orthologs #228. Best score 43 bits
Score difference with first non-orthologous sequence - M.jannaschii:43 P.pacificus:43

Q59069              	100.00%		H3G2C1              	100.00%
Bootstrap support for Q59069 as seed ortholog is 100%.
Bootstrap support for H3G2C1 as seed ortholog is 100%.

Group of orthologs #229. Best score 42 bits
Score difference with first non-orthologous sequence - M.jannaschii:42 P.pacificus:42

Q57726              	100.00%		H3E1E6              	100.00%
Q58235              	36.30%		
Bootstrap support for Q57726 as seed ortholog is 100%.
Bootstrap support for H3E1E6 as seed ortholog is 100%.

Group of orthologs #230. Best score 42 bits
Score difference with first non-orthologous sequence - M.jannaschii:42 P.pacificus:42

Q59000              	100.00%		H3FL10              	100.00%
Bootstrap support for Q59000 as seed ortholog is 100%.
Bootstrap support for H3FL10 as seed ortholog is 100%.

Group of orthologs #231. Best score 41 bits
Score difference with first non-orthologous sequence - M.jannaschii:41 P.pacificus:41

Q58827              	100.00%		H3FFD3              	100.00%
Bootstrap support for Q58827 as seed ortholog is 100%.
Bootstrap support for H3FFD3 as seed ortholog is 100%.

Group of orthologs #232. Best score 40 bits
Score difference with first non-orthologous sequence - M.jannaschii:40 P.pacificus:40

Q58619              	100.00%		H3FVS2              	100.00%
Q57964              	11.76%		
Bootstrap support for Q58619 as seed ortholog is 100%.
Bootstrap support for H3FVS2 as seed ortholog is 100%.