###################################
1377 groups of orthologs
1606 in-paralogs from L.major
1628 in-paralogs from P.pallidum
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 2200 bits
Score difference with first non-orthologous sequence - L.major:645 P.pallidum:2200

Q4QBN6              	100.00%		D3BP40              	100.00%
Bootstrap support for Q4QBN6 as seed ortholog is 79%.
Bootstrap support for D3BP40 as seed ortholog is 100%.

Group of orthologs #2. Best score 2007 bits
Score difference with first non-orthologous sequence - L.major:2007 P.pallidum:2007

Q4QD18              	100.00%		D3B0N0              	100.00%
Bootstrap support for Q4QD18 as seed ortholog is 100%.
Bootstrap support for D3B0N0 as seed ortholog is 100%.

Group of orthologs #3. Best score 1579 bits
Score difference with first non-orthologous sequence - L.major:1579 P.pallidum:1579

E9AFM0              	100.00%		D3BFM8              	100.00%
Bootstrap support for E9AFM0 as seed ortholog is 100%.
Bootstrap support for D3BFM8 as seed ortholog is 100%.

Group of orthologs #4. Best score 1393 bits
Score difference with first non-orthologous sequence - L.major:767 P.pallidum:273

Q4QGA4              	100.00%		D3AVZ6              	100.00%
Bootstrap support for Q4QGA4 as seed ortholog is 100%.
Bootstrap support for D3AVZ6 as seed ortholog is 99%.

Group of orthologs #5. Best score 1351 bits
Score difference with first non-orthologous sequence - L.major:1351 P.pallidum:1351

Q4QIT5              	100.00%		D3BM55              	100.00%
Bootstrap support for Q4QIT5 as seed ortholog is 100%.
Bootstrap support for D3BM55 as seed ortholog is 100%.

Group of orthologs #6. Best score 1346 bits
Score difference with first non-orthologous sequence - L.major:1346 P.pallidum:1346

Q4QEW0              	100.00%		D3BB35              	100.00%
Bootstrap support for Q4QEW0 as seed ortholog is 100%.
Bootstrap support for D3BB35 as seed ortholog is 100%.

Group of orthologs #7. Best score 1271 bits
Score difference with first non-orthologous sequence - L.major:1271 P.pallidum:1271

E9AFR3              	100.00%		D3BMV7              	100.00%
Bootstrap support for E9AFR3 as seed ortholog is 100%.
Bootstrap support for D3BMV7 as seed ortholog is 100%.

Group of orthologs #8. Best score 1262 bits
Score difference with first non-orthologous sequence - L.major:1262 P.pallidum:1262

Q4Q5W1              	100.00%		D3BI99              	100.00%
Bootstrap support for Q4Q5W1 as seed ortholog is 100%.
Bootstrap support for D3BI99 as seed ortholog is 100%.

Group of orthologs #9. Best score 1132 bits
Score difference with first non-orthologous sequence - L.major:713 P.pallidum:592

Q4Q600              	100.00%		D3BJK4              	100.00%
Bootstrap support for Q4Q600 as seed ortholog is 100%.
Bootstrap support for D3BJK4 as seed ortholog is 100%.

Group of orthologs #10. Best score 1111 bits
Score difference with first non-orthologous sequence - L.major:870 P.pallidum:648

Q4Q1T9              	100.00%		D3BIX9              	100.00%
Bootstrap support for Q4Q1T9 as seed ortholog is 100%.
Bootstrap support for D3BIX9 as seed ortholog is 100%.

Group of orthologs #11. Best score 1107 bits
Score difference with first non-orthologous sequence - L.major:1107 P.pallidum:1107

Q4QDT8              	100.00%		D3BLR5              	100.00%
Bootstrap support for Q4QDT8 as seed ortholog is 100%.
Bootstrap support for D3BLR5 as seed ortholog is 100%.

Group of orthologs #12. Best score 1103 bits
Score difference with first non-orthologous sequence - L.major:1103 P.pallidum:1103

Q4Q1R2              	100.00%		D3BNB1              	100.00%
Bootstrap support for Q4Q1R2 as seed ortholog is 100%.
Bootstrap support for D3BNB1 as seed ortholog is 100%.

Group of orthologs #13. Best score 1075 bits
Score difference with first non-orthologous sequence - L.major:1075 P.pallidum:799

Q4Q0J9              	100.00%		D3BUX1              	100.00%
Bootstrap support for Q4Q0J9 as seed ortholog is 100%.
Bootstrap support for D3BUX1 as seed ortholog is 100%.

Group of orthologs #14. Best score 1064 bits
Score difference with first non-orthologous sequence - L.major:678 P.pallidum:565

Q4Q3H2              	100.00%		D3BKC8              	100.00%
Bootstrap support for Q4Q3H2 as seed ortholog is 100%.
Bootstrap support for D3BKC8 as seed ortholog is 100%.

Group of orthologs #15. Best score 1046 bits
Score difference with first non-orthologous sequence - L.major:647 P.pallidum:249

Q4Q259              	100.00%		D3BU68              	100.00%
Bootstrap support for Q4Q259 as seed ortholog is 100%.
Bootstrap support for D3BU68 as seed ortholog is 99%.

Group of orthologs #16. Best score 1044 bits
Score difference with first non-orthologous sequence - L.major:1044 P.pallidum:1044

Q4QD43              	100.00%		D3B936              	100.00%
Bootstrap support for Q4QD43 as seed ortholog is 100%.
Bootstrap support for D3B936 as seed ortholog is 100%.

Group of orthologs #17. Best score 1042 bits
Score difference with first non-orthologous sequence - L.major:1042 P.pallidum:817

Q4QDZ1              	100.00%		D3BM47              	100.00%
Bootstrap support for Q4QDZ1 as seed ortholog is 100%.
Bootstrap support for D3BM47 as seed ortholog is 100%.

Group of orthologs #18. Best score 970 bits
Score difference with first non-orthologous sequence - L.major:970 P.pallidum:970

Q4Q8H8              	100.00%		D3BIF3              	100.00%
Bootstrap support for Q4Q8H8 as seed ortholog is 100%.
Bootstrap support for D3BIF3 as seed ortholog is 100%.

Group of orthologs #19. Best score 968 bits
Score difference with first non-orthologous sequence - L.major:968 P.pallidum:968

Q4Q9I8              	100.00%		D3AWX9              	100.00%
Bootstrap support for Q4Q9I8 as seed ortholog is 100%.
Bootstrap support for D3AWX9 as seed ortholog is 100%.

Group of orthologs #20. Best score 955 bits
Score difference with first non-orthologous sequence - L.major:955 P.pallidum:955

E9ADY5              	100.00%		D3BG38              	100.00%
Bootstrap support for E9ADY5 as seed ortholog is 100%.
Bootstrap support for D3BG38 as seed ortholog is 100%.

Group of orthologs #21. Best score 945 bits
Score difference with first non-orthologous sequence - L.major:170 P.pallidum:730

Q4Q7Y4              	100.00%		D3B545              	100.00%
                    	       		D3AVQ2              	45.38%
Bootstrap support for Q4Q7Y4 as seed ortholog is 99%.
Bootstrap support for D3B545 as seed ortholog is 100%.

Group of orthologs #22. Best score 943 bits
Score difference with first non-orthologous sequence - L.major:377 P.pallidum:83

Q4Q836              	100.00%		D3B7U7              	100.00%
Bootstrap support for Q4Q836 as seed ortholog is 100%.
Bootstrap support for D3B7U7 as seed ortholog is 76%.

Group of orthologs #23. Best score 918 bits
Score difference with first non-orthologous sequence - L.major:122 P.pallidum:918

Q4Q0C8              	100.00%		D3BLH3              	100.00%
Bootstrap support for Q4Q0C8 as seed ortholog is 85%.
Bootstrap support for D3BLH3 as seed ortholog is 100%.

Group of orthologs #24. Best score 915 bits
Score difference with first non-orthologous sequence - L.major:418 P.pallidum:314

Q4Q4I6              	100.00%		D3BEQ3              	100.00%
Q4Q4I0              	98.53%		
Bootstrap support for Q4Q4I6 as seed ortholog is 100%.
Bootstrap support for D3BEQ3 as seed ortholog is 100%.

Group of orthologs #25. Best score 889 bits
Score difference with first non-orthologous sequence - L.major:889 P.pallidum:889

E9AD07              	100.00%		D3BT33              	100.00%
Bootstrap support for E9AD07 as seed ortholog is 100%.
Bootstrap support for D3BT33 as seed ortholog is 100%.

Group of orthologs #26. Best score 889 bits
Score difference with first non-orthologous sequence - L.major:889 P.pallidum:178

Q4Q6X7              	100.00%		D3BPX3              	100.00%
Bootstrap support for Q4Q6X7 as seed ortholog is 100%.
Bootstrap support for D3BPX3 as seed ortholog is 99%.

Group of orthologs #27. Best score 886 bits
Score difference with first non-orthologous sequence - L.major:886 P.pallidum:886

Q4Q6P8              	100.00%		D3BHD6              	100.00%
Bootstrap support for Q4Q6P8 as seed ortholog is 100%.
Bootstrap support for D3BHD6 as seed ortholog is 100%.

Group of orthologs #28. Best score 870 bits
Score difference with first non-orthologous sequence - L.major:870 P.pallidum:870

E9ACE5              	100.00%		D3BNJ7              	100.00%
Bootstrap support for E9ACE5 as seed ortholog is 100%.
Bootstrap support for D3BNJ7 as seed ortholog is 100%.

Group of orthologs #29. Best score 805 bits
Score difference with first non-orthologous sequence - L.major:805 P.pallidum:805

Q4Q2H7              	100.00%		D3B700              	100.00%
Bootstrap support for Q4Q2H7 as seed ortholog is 100%.
Bootstrap support for D3B700 as seed ortholog is 100%.

Group of orthologs #30. Best score 803 bits
Score difference with first non-orthologous sequence - L.major:803 P.pallidum:803

Q4Q165              	100.00%		D3B8W8              	100.00%
Bootstrap support for Q4Q165 as seed ortholog is 100%.
Bootstrap support for D3B8W8 as seed ortholog is 100%.

Group of orthologs #31. Best score 802 bits
Score difference with first non-orthologous sequence - L.major:802 P.pallidum:802

Q4Q2B0              	100.00%		D3B3V5              	100.00%
Bootstrap support for Q4Q2B0 as seed ortholog is 100%.
Bootstrap support for D3B3V5 as seed ortholog is 100%.

Group of orthologs #32. Best score 801 bits
Score difference with first non-orthologous sequence - L.major:739 P.pallidum:699

Q4QCE4              	100.00%		D3AZB7              	100.00%
Bootstrap support for Q4QCE4 as seed ortholog is 100%.
Bootstrap support for D3AZB7 as seed ortholog is 100%.

Group of orthologs #33. Best score 794 bits
Score difference with first non-orthologous sequence - L.major:244 P.pallidum:794

Q4QJJ7              	100.00%		D3BM96              	100.00%
Bootstrap support for Q4QJJ7 as seed ortholog is 100%.
Bootstrap support for D3BM96 as seed ortholog is 100%.

Group of orthologs #34. Best score 775 bits
Score difference with first non-orthologous sequence - L.major:775 P.pallidum:775

Q4QG44              	100.00%		D3B015              	100.00%
Bootstrap support for Q4QG44 as seed ortholog is 100%.
Bootstrap support for D3B015 as seed ortholog is 100%.

Group of orthologs #35. Best score 775 bits
Score difference with first non-orthologous sequence - L.major:105 P.pallidum:526

Q4Q8E6              	100.00%		D3BE43              	100.00%
Bootstrap support for Q4Q8E6 as seed ortholog is 99%.
Bootstrap support for D3BE43 as seed ortholog is 100%.

Group of orthologs #36. Best score 765 bits
Score difference with first non-orthologous sequence - L.major:408 P.pallidum:446

Q4Q2M2              	100.00%		D3B2A8              	100.00%
Bootstrap support for Q4Q2M2 as seed ortholog is 100%.
Bootstrap support for D3B2A8 as seed ortholog is 100%.

Group of orthologs #37. Best score 764 bits
Score difference with first non-orthologous sequence - L.major:764 P.pallidum:421

Q4QBJ3              	100.00%		D3B7Q7              	100.00%
Bootstrap support for Q4QBJ3 as seed ortholog is 100%.
Bootstrap support for D3B7Q7 as seed ortholog is 100%.

Group of orthologs #38. Best score 747 bits
Score difference with first non-orthologous sequence - L.major:747 P.pallidum:617

Q4Q3A6              	100.00%		D3B2N2              	100.00%
Q4Q8S4              	19.77%		D3BQN9              	64.64%
                    	       		D3BQP1              	39.98%
                    	       		D3B9D6              	25.03%
Bootstrap support for Q4Q3A6 as seed ortholog is 100%.
Bootstrap support for D3B2N2 as seed ortholog is 100%.

Group of orthologs #39. Best score 746 bits
Score difference with first non-orthologous sequence - L.major:746 P.pallidum:746

Q4Q772              	100.00%		D3BFE8              	100.00%
Bootstrap support for Q4Q772 as seed ortholog is 100%.
Bootstrap support for D3BFE8 as seed ortholog is 100%.

Group of orthologs #40. Best score 730 bits
Score difference with first non-orthologous sequence - L.major:34 P.pallidum:187

Q4Q171              	100.00%		D3B6X4              	100.00%
Bootstrap support for Q4Q171 as seed ortholog is 70%.
Alternative seed ortholog is E9AD65 (34 bits away from this cluster)
Bootstrap support for D3B6X4 as seed ortholog is 99%.

Group of orthologs #41. Best score 718 bits
Score difference with first non-orthologous sequence - L.major:230 P.pallidum:525

Q4Q744              	100.00%		D3AY31              	100.00%
Q4Q745              	99.13%		
Q4Q740              	96.17%		
Q4Q747              	81.01%		
Bootstrap support for Q4Q744 as seed ortholog is 100%.
Bootstrap support for D3AY31 as seed ortholog is 100%.

Group of orthologs #42. Best score 700 bits
Score difference with first non-orthologous sequence - L.major:700 P.pallidum:700

Q4Q3L5              	100.00%		D3BD99              	100.00%
Bootstrap support for Q4Q3L5 as seed ortholog is 100%.
Bootstrap support for D3BD99 as seed ortholog is 100%.

Group of orthologs #43. Best score 695 bits
Score difference with first non-orthologous sequence - L.major:429 P.pallidum:695

Q4QBZ6              	100.00%		D3BQW2              	100.00%
Q4Q4C4              	97.66%		
Q4QI42              	96.73%		
Bootstrap support for Q4QBZ6 as seed ortholog is 100%.
Bootstrap support for D3BQW2 as seed ortholog is 100%.

Group of orthologs #44. Best score 693 bits
Score difference with first non-orthologous sequence - L.major:601 P.pallidum:693

Q4Q821              	100.00%		D3B5K2              	100.00%
Bootstrap support for Q4Q821 as seed ortholog is 100%.
Bootstrap support for D3B5K2 as seed ortholog is 100%.

Group of orthologs #45. Best score 688 bits
Score difference with first non-orthologous sequence - L.major:465 P.pallidum:688

Q4QGC5              	100.00%		D3AWD2              	100.00%
                    	       		D3BGV6              	58.37%
Bootstrap support for Q4QGC5 as seed ortholog is 100%.
Bootstrap support for D3AWD2 as seed ortholog is 100%.

Group of orthologs #46. Best score 683 bits
Score difference with first non-orthologous sequence - L.major:400 P.pallidum:683

Q4Q8I2              	100.00%		D3BMR9              	100.00%
Bootstrap support for Q4Q8I2 as seed ortholog is 100%.
Bootstrap support for D3BMR9 as seed ortholog is 100%.

Group of orthologs #47. Best score 680 bits
Score difference with first non-orthologous sequence - L.major:244 P.pallidum:146

Q4QBE9              	100.00%		D3B5K6              	100.00%
Q4QBF4              	32.11%		D3B193              	7.69%
Q4QBF3              	30.46%		D3BGW1              	5.78%
Q4Q6D6              	16.08%		
Q4Q6D4              	12.90%		
Q4Q6D5              	12.70%		
Q4Q6B9              	11.58%		
Bootstrap support for Q4QBE9 as seed ortholog is 99%.
Bootstrap support for D3B5K6 as seed ortholog is 99%.

Group of orthologs #48. Best score 677 bits
Score difference with first non-orthologous sequence - L.major:166 P.pallidum:151

E9AEU3              	100.00%		D3BEE3              	100.00%
Bootstrap support for E9AEU3 as seed ortholog is 99%.
Bootstrap support for D3BEE3 as seed ortholog is 99%.

Group of orthologs #49. Best score 670 bits
Score difference with first non-orthologous sequence - L.major:244 P.pallidum:670

E9AD75              	100.00%		D3BGA0              	100.00%
E9AD74              	85.27%		D3BG99              	48.00%
Q4QGW0              	37.85%		D3BB40              	28.38%
Q4QGV7              	37.85%		
Q4QGV3              	27.80%		
Q4QGV5              	25.63%		
Q4QGV8              	21.53%		
E9ACA5              	20.39%		
Q4QFA9              	16.94%		
Bootstrap support for E9AD75 as seed ortholog is 99%.
Bootstrap support for D3BGA0 as seed ortholog is 100%.

Group of orthologs #50. Best score 669 bits
Score difference with first non-orthologous sequence - L.major:596 P.pallidum:444

Q4Q5I2              	100.00%		D3BFC6              	100.00%
Bootstrap support for Q4Q5I2 as seed ortholog is 100%.
Bootstrap support for D3BFC6 as seed ortholog is 100%.

Group of orthologs #51. Best score 664 bits
Score difference with first non-orthologous sequence - L.major:573 P.pallidum:445

E9AFL0              	100.00%		D3BPJ6              	100.00%
Bootstrap support for E9AFL0 as seed ortholog is 100%.
Bootstrap support for D3BPJ6 as seed ortholog is 100%.

Group of orthologs #52. Best score 661 bits
Score difference with first non-orthologous sequence - L.major:187 P.pallidum:132

Q4Q1D7              	100.00%		D3AVT3              	100.00%
                    	       		D3B6F6              	9.35%
Bootstrap support for Q4Q1D7 as seed ortholog is 99%.
Bootstrap support for D3AVT3 as seed ortholog is 99%.

Group of orthologs #53. Best score 655 bits
Score difference with first non-orthologous sequence - L.major:655 P.pallidum:150

E9AEW4              	100.00%		D3BMT5              	100.00%
Bootstrap support for E9AEW4 as seed ortholog is 100%.
Bootstrap support for D3BMT5 as seed ortholog is 98%.

Group of orthologs #54. Best score 654 bits
Score difference with first non-orthologous sequence - L.major:117 P.pallidum:270

Q4QED4              	100.00%		D3BF92              	100.00%
Q4QIM8              	100.00%		D3BT92              	100.00%
Q4QIM6              	74.66%		D3BH58              	35.79%
                    	       		D3BG47              	11.40%
                    	       		D3BBZ7              	10.21%
Bootstrap support for Q4QED4 as seed ortholog is 97%.
Bootstrap support for Q4QIM8 as seed ortholog is 91%.
Bootstrap support for D3BF92 as seed ortholog is 99%.
Bootstrap support for D3BT92 as seed ortholog is 99%.

Group of orthologs #55. Best score 653 bits
Score difference with first non-orthologous sequence - L.major:578 P.pallidum:348

Q4QII2              	100.00%		D3BEG0              	100.00%
Bootstrap support for Q4QII2 as seed ortholog is 100%.
Bootstrap support for D3BEG0 as seed ortholog is 99%.

Group of orthologs #56. Best score 646 bits
Score difference with first non-orthologous sequence - L.major:646 P.pallidum:646

Q4QE66              	100.00%		D3B5A9              	100.00%
Bootstrap support for Q4QE66 as seed ortholog is 100%.
Bootstrap support for D3B5A9 as seed ortholog is 100%.

Group of orthologs #57. Best score 643 bits
Score difference with first non-orthologous sequence - L.major:643 P.pallidum:643

Q4Q2J4              	100.00%		D3BI12              	100.00%
Bootstrap support for Q4Q2J4 as seed ortholog is 100%.
Bootstrap support for D3BI12 as seed ortholog is 100%.

Group of orthologs #58. Best score 642 bits
Score difference with first non-orthologous sequence - L.major:642 P.pallidum:642

Q4QJA4              	100.00%		D3BLC0              	100.00%
Bootstrap support for Q4QJA4 as seed ortholog is 100%.
Bootstrap support for D3BLC0 as seed ortholog is 100%.

Group of orthologs #59. Best score 638 bits
Score difference with first non-orthologous sequence - L.major:638 P.pallidum:638

Q4Q6R3              	100.00%		D3B8U1              	100.00%
Bootstrap support for Q4Q6R3 as seed ortholog is 100%.
Bootstrap support for D3B8U1 as seed ortholog is 100%.

Group of orthologs #60. Best score 635 bits
Score difference with first non-orthologous sequence - L.major:635 P.pallidum:635

Q4QH21              	100.00%		D3AW74              	100.00%
Bootstrap support for Q4QH21 as seed ortholog is 100%.
Bootstrap support for D3AW74 as seed ortholog is 100%.

Group of orthologs #61. Best score 622 bits
Score difference with first non-orthologous sequence - L.major:561 P.pallidum:387

E9ADA4              	100.00%		D3B5E4              	100.00%
Bootstrap support for E9ADA4 as seed ortholog is 100%.
Bootstrap support for D3B5E4 as seed ortholog is 100%.

Group of orthologs #62. Best score 621 bits
Score difference with first non-orthologous sequence - L.major:621 P.pallidum:165

Q4QAM3              	100.00%		D3BB51              	100.00%
Bootstrap support for Q4QAM3 as seed ortholog is 100%.
Bootstrap support for D3BB51 as seed ortholog is 99%.

Group of orthologs #63. Best score 619 bits
Score difference with first non-orthologous sequence - L.major:260 P.pallidum:261

Q4Q3A5              	100.00%		D3BK04              	100.00%
                    	       		D3BKB9              	18.27%
                    	       		D3BA71              	12.00%
                    	       		D3BGI5              	8.45%
Bootstrap support for Q4Q3A5 as seed ortholog is 99%.
Bootstrap support for D3BK04 as seed ortholog is 100%.

Group of orthologs #64. Best score 615 bits
Score difference with first non-orthologous sequence - L.major:615 P.pallidum:615

Q4Q735              	100.00%		D3BJL2              	100.00%
Bootstrap support for Q4Q735 as seed ortholog is 100%.
Bootstrap support for D3BJL2 as seed ortholog is 100%.

Group of orthologs #65. Best score 614 bits
Score difference with first non-orthologous sequence - L.major:614 P.pallidum:614

Q4Q878              	100.00%		D3B350              	100.00%
Bootstrap support for Q4Q878 as seed ortholog is 100%.
Bootstrap support for D3B350 as seed ortholog is 100%.

Group of orthologs #66. Best score 611 bits
Score difference with first non-orthologous sequence - L.major:148 P.pallidum:36

Q4QG01              	100.00%		D3BVP5              	100.00%
                    	       		D3AX78              	20.19%
                    	       		D3B8D6              	5.75%
Bootstrap support for Q4QG01 as seed ortholog is 99%.
Bootstrap support for D3BVP5 as seed ortholog is 67%.
Alternative seed ortholog is D3B4A2 (36 bits away from this cluster)

Group of orthologs #67. Best score 607 bits
Score difference with first non-orthologous sequence - L.major:483 P.pallidum:607

Q4Q417              	100.00%		D3B1P3              	100.00%
Bootstrap support for Q4Q417 as seed ortholog is 100%.
Bootstrap support for D3B1P3 as seed ortholog is 100%.

Group of orthologs #68. Best score 606 bits
Score difference with first non-orthologous sequence - L.major:606 P.pallidum:606

Q4Q124              	100.00%		D3BNY4              	100.00%
Bootstrap support for Q4Q124 as seed ortholog is 100%.
Bootstrap support for D3BNY4 as seed ortholog is 100%.

Group of orthologs #69. Best score 603 bits
Score difference with first non-orthologous sequence - L.major:603 P.pallidum:226

Q4QBC0              	100.00%		D3B6W7              	100.00%
Q9U0W1              	80.19%		
Bootstrap support for Q4QBC0 as seed ortholog is 100%.
Bootstrap support for D3B6W7 as seed ortholog is 99%.

Group of orthologs #70. Best score 601 bits
Score difference with first non-orthologous sequence - L.major:601 P.pallidum:601

Q4Q2T4              	100.00%		D3BB83              	100.00%
Bootstrap support for Q4Q2T4 as seed ortholog is 100%.
Bootstrap support for D3BB83 as seed ortholog is 100%.

Group of orthologs #71. Best score 600 bits
Score difference with first non-orthologous sequence - L.major:600 P.pallidum:600

E9ABZ4              	100.00%		D3BRG0              	100.00%
Bootstrap support for E9ABZ4 as seed ortholog is 100%.
Bootstrap support for D3BRG0 as seed ortholog is 100%.

Group of orthologs #72. Best score 600 bits
Score difference with first non-orthologous sequence - L.major:184 P.pallidum:600

Q9NF77              	100.00%		D3BPX4              	100.00%
Bootstrap support for Q9NF77 as seed ortholog is 99%.
Bootstrap support for D3BPX4 as seed ortholog is 100%.

Group of orthologs #73. Best score 593 bits
Score difference with first non-orthologous sequence - L.major:593 P.pallidum:593

Q4QBY3              	100.00%		D3BSA3              	100.00%
Bootstrap support for Q4QBY3 as seed ortholog is 100%.
Bootstrap support for D3BSA3 as seed ortholog is 100%.

Group of orthologs #74. Best score 592 bits
Score difference with first non-orthologous sequence - L.major:592 P.pallidum:261

Q4QE33              	100.00%		D3BP16              	100.00%
Bootstrap support for Q4QE33 as seed ortholog is 100%.
Bootstrap support for D3BP16 as seed ortholog is 99%.

Group of orthologs #75. Best score 591 bits
Score difference with first non-orthologous sequence - L.major:537 P.pallidum:385

Q4Q252              	100.00%		D3BDE2              	100.00%
Bootstrap support for Q4Q252 as seed ortholog is 100%.
Bootstrap support for D3BDE2 as seed ortholog is 100%.

Group of orthologs #76. Best score 589 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:501

Q4Q1M0              	100.00%		D3B3I9              	100.00%
Q4Q1M1              	69.75%		
Bootstrap support for Q4Q1M0 as seed ortholog is 99%.
Bootstrap support for D3B3I9 as seed ortholog is 100%.

Group of orthologs #77. Best score 586 bits
Score difference with first non-orthologous sequence - L.major:586 P.pallidum:203

E9AD83              	100.00%		D3BKM7              	100.00%
Bootstrap support for E9AD83 as seed ortholog is 100%.
Bootstrap support for D3BKM7 as seed ortholog is 100%.

Group of orthologs #78. Best score 585 bits
Score difference with first non-orthologous sequence - L.major:516 P.pallidum:391

Q4Q4U5              	100.00%		D3BCV5              	100.00%
Bootstrap support for Q4Q4U5 as seed ortholog is 100%.
Bootstrap support for D3BCV5 as seed ortholog is 100%.

Group of orthologs #79. Best score 584 bits
Score difference with first non-orthologous sequence - L.major:584 P.pallidum:584

Q4Q3R1              	100.00%		D3BFQ1              	100.00%
Bootstrap support for Q4Q3R1 as seed ortholog is 100%.
Bootstrap support for D3BFQ1 as seed ortholog is 100%.

Group of orthologs #80. Best score 581 bits
Score difference with first non-orthologous sequence - L.major:517 P.pallidum:314

Q4QC87              	100.00%		D3B3N8              	100.00%
Bootstrap support for Q4QC87 as seed ortholog is 100%.
Bootstrap support for D3B3N8 as seed ortholog is 100%.

Group of orthologs #81. Best score 581 bits
Score difference with first non-orthologous sequence - L.major:581 P.pallidum:581

Q4QBU0              	100.00%		D3BIZ6              	100.00%
Bootstrap support for Q4QBU0 as seed ortholog is 100%.
Bootstrap support for D3BIZ6 as seed ortholog is 100%.

Group of orthologs #82. Best score 579 bits
Score difference with first non-orthologous sequence - L.major:497 P.pallidum:398

Q4QB32              	100.00%		D3B0K9              	100.00%
Bootstrap support for Q4QB32 as seed ortholog is 100%.
Bootstrap support for D3B0K9 as seed ortholog is 100%.

Group of orthologs #83. Best score 577 bits
Score difference with first non-orthologous sequence - L.major:577 P.pallidum:577

Q4QJA6              	100.00%		D3BE79              	100.00%
Bootstrap support for Q4QJA6 as seed ortholog is 100%.
Bootstrap support for D3BE79 as seed ortholog is 100%.

Group of orthologs #84. Best score 577 bits
Score difference with first non-orthologous sequence - L.major:577 P.pallidum:577

Q4Q8M1              	100.00%		D3BVH1              	100.00%
Bootstrap support for Q4Q8M1 as seed ortholog is 100%.
Bootstrap support for D3BVH1 as seed ortholog is 100%.

Group of orthologs #85. Best score 572 bits
Score difference with first non-orthologous sequence - L.major:572 P.pallidum:572

Q4QFJ8              	100.00%		D3BPD1              	100.00%
Bootstrap support for Q4QFJ8 as seed ortholog is 100%.
Bootstrap support for D3BPD1 as seed ortholog is 100%.

Group of orthologs #86. Best score 567 bits
Score difference with first non-orthologous sequence - L.major:209 P.pallidum:139

E9ACG3              	100.00%		D3BQP4              	100.00%
Bootstrap support for E9ACG3 as seed ortholog is 99%.
Bootstrap support for D3BQP4 as seed ortholog is 99%.

Group of orthologs #87. Best score 567 bits
Score difference with first non-orthologous sequence - L.major:567 P.pallidum:567

Q4Q893              	100.00%		D3BQY0              	100.00%
Bootstrap support for Q4Q893 as seed ortholog is 100%.
Bootstrap support for D3BQY0 as seed ortholog is 100%.

Group of orthologs #88. Best score 566 bits
Score difference with first non-orthologous sequence - L.major:357 P.pallidum:110

Q9U1E8              	100.00%		D3B2M1              	100.00%
                    	       		D3BD07              	98.96%
                    	       		D3BM82              	94.30%
                    	       		D3BSX0              	92.75%
                    	       		D3B1V2              	69.95%
Bootstrap support for Q9U1E8 as seed ortholog is 100%.
Bootstrap support for D3B2M1 as seed ortholog is 99%.

Group of orthologs #89. Best score 565 bits
Score difference with first non-orthologous sequence - L.major:565 P.pallidum:565

Q4QHI7              	100.00%		D3BEC9              	100.00%
Bootstrap support for Q4QHI7 as seed ortholog is 100%.
Bootstrap support for D3BEC9 as seed ortholog is 100%.

Group of orthologs #90. Best score 563 bits
Score difference with first non-orthologous sequence - L.major:563 P.pallidum:563

Q4Q5U3              	100.00%		D3BHW3              	100.00%
Bootstrap support for Q4Q5U3 as seed ortholog is 100%.
Bootstrap support for D3BHW3 as seed ortholog is 100%.

Group of orthologs #91. Best score 561 bits
Score difference with first non-orthologous sequence - L.major:561 P.pallidum:561

Q4QAY7              	100.00%		D3BUD3              	100.00%
Q4Q5J0              	12.29%		D3BUC4              	46.21%
Bootstrap support for Q4QAY7 as seed ortholog is 100%.
Bootstrap support for D3BUD3 as seed ortholog is 100%.

Group of orthologs #92. Best score 561 bits
Score difference with first non-orthologous sequence - L.major:561 P.pallidum:44

Q4Q1B9              	100.00%		D3B594              	100.00%
Bootstrap support for Q4Q1B9 as seed ortholog is 100%.
Bootstrap support for D3B594 as seed ortholog is 89%.

Group of orthologs #93. Best score 557 bits
Score difference with first non-orthologous sequence - L.major:348 P.pallidum:227

Q4QEI8              	100.00%		D3BP51              	100.00%
Q4QEI9              	100.00%		
Bootstrap support for Q4QEI8 as seed ortholog is 100%.
Bootstrap support for Q4QEI9 as seed ortholog is 100%.
Bootstrap support for D3BP51 as seed ortholog is 100%.

Group of orthologs #94. Best score 557 bits
Score difference with first non-orthologous sequence - L.major:339 P.pallidum:171

Q4Q8N7              	100.00%		D3B6I9              	100.00%
Bootstrap support for Q4Q8N7 as seed ortholog is 100%.
Bootstrap support for D3B6I9 as seed ortholog is 99%.

Group of orthologs #95. Best score 557 bits
Score difference with first non-orthologous sequence - L.major:460 P.pallidum:408

Q4QFY8              	100.00%		D3BK16              	100.00%
Bootstrap support for Q4QFY8 as seed ortholog is 100%.
Bootstrap support for D3BK16 as seed ortholog is 100%.

Group of orthologs #96. Best score 556 bits
Score difference with first non-orthologous sequence - L.major:488 P.pallidum:556

Q4Q9X5              	100.00%		D3B434              	100.00%
Q4Q9X6              	100.00%		
Bootstrap support for Q4Q9X5 as seed ortholog is 100%.
Bootstrap support for Q4Q9X6 as seed ortholog is 100%.
Bootstrap support for D3B434 as seed ortholog is 100%.

Group of orthologs #97. Best score 555 bits
Score difference with first non-orthologous sequence - L.major:555 P.pallidum:555

Q4Q131              	100.00%		D3B7L4              	100.00%
Bootstrap support for Q4Q131 as seed ortholog is 100%.
Bootstrap support for D3B7L4 as seed ortholog is 100%.

Group of orthologs #98. Best score 554 bits
Score difference with first non-orthologous sequence - L.major:554 P.pallidum:554

Q4QG45              	100.00%		D3B6W8              	100.00%
Bootstrap support for Q4QG45 as seed ortholog is 100%.
Bootstrap support for D3B6W8 as seed ortholog is 100%.

Group of orthologs #99. Best score 552 bits
Score difference with first non-orthologous sequence - L.major:552 P.pallidum:552

E9ADL4              	100.00%		D3B684              	100.00%
Bootstrap support for E9ADL4 as seed ortholog is 100%.
Bootstrap support for D3B684 as seed ortholog is 100%.

Group of orthologs #100. Best score 552 bits
Score difference with first non-orthologous sequence - L.major:441 P.pallidum:433

E9ACG7              	100.00%		D3BP41              	100.00%
Bootstrap support for E9ACG7 as seed ortholog is 100%.
Bootstrap support for D3BP41 as seed ortholog is 100%.

Group of orthologs #101. Best score 552 bits
Score difference with first non-orthologous sequence - L.major:268 P.pallidum:207

Q4Q3U8              	100.00%		D3BLY9              	100.00%
Bootstrap support for Q4Q3U8 as seed ortholog is 100%.
Bootstrap support for D3BLY9 as seed ortholog is 99%.

Group of orthologs #102. Best score 549 bits
Score difference with first non-orthologous sequence - L.major:549 P.pallidum:474

Q4QC62              	100.00%		D3BDE5              	100.00%
Bootstrap support for Q4QC62 as seed ortholog is 100%.
Bootstrap support for D3BDE5 as seed ortholog is 100%.

Group of orthologs #103. Best score 546 bits
Score difference with first non-orthologous sequence - L.major:317 P.pallidum:546

Q4QAQ7              	100.00%		D3B2V3              	100.00%
Bootstrap support for Q4QAQ7 as seed ortholog is 100%.
Bootstrap support for D3B2V3 as seed ortholog is 100%.

Group of orthologs #104. Best score 546 bits
Score difference with first non-orthologous sequence - L.major:546 P.pallidum:546

Q4QF83              	100.00%		D3BT84              	100.00%
Bootstrap support for Q4QF83 as seed ortholog is 100%.
Bootstrap support for D3BT84 as seed ortholog is 100%.

Group of orthologs #105. Best score 545 bits
Score difference with first non-orthologous sequence - L.major:545 P.pallidum:545

Q4QJ13              	100.00%		D3BC24              	100.00%
Bootstrap support for Q4QJ13 as seed ortholog is 100%.
Bootstrap support for D3BC24 as seed ortholog is 100%.

Group of orthologs #106. Best score 542 bits
Score difference with first non-orthologous sequence - L.major:542 P.pallidum:542

Q4QCF1              	100.00%		D3BII3              	100.00%
Bootstrap support for Q4QCF1 as seed ortholog is 100%.
Bootstrap support for D3BII3 as seed ortholog is 100%.

Group of orthologs #107. Best score 542 bits
Score difference with first non-orthologous sequence - L.major:542 P.pallidum:288

Q4QGR8              	100.00%		D3BQM3              	100.00%
Bootstrap support for Q4QGR8 as seed ortholog is 100%.
Bootstrap support for D3BQM3 as seed ortholog is 99%.

Group of orthologs #108. Best score 538 bits
Score difference with first non-orthologous sequence - L.major:191 P.pallidum:238

Q4Q6W4              	100.00%		D3BAY0              	100.00%
Bootstrap support for Q4Q6W4 as seed ortholog is 99%.
Bootstrap support for D3BAY0 as seed ortholog is 53%.
Alternative seed ortholog is D3AVX4 (238 bits away from this cluster)

Group of orthologs #109. Best score 535 bits
Score difference with first non-orthologous sequence - L.major:535 P.pallidum:535

Q4Q0X8              	100.00%		D3BGX5              	100.00%
Bootstrap support for Q4Q0X8 as seed ortholog is 100%.
Bootstrap support for D3BGX5 as seed ortholog is 100%.

Group of orthologs #110. Best score 535 bits
Score difference with first non-orthologous sequence - L.major:270 P.pallidum:180

Q4Q219              	100.00%		D3BMN4              	100.00%
Bootstrap support for Q4Q219 as seed ortholog is 100%.
Bootstrap support for D3BMN4 as seed ortholog is 99%.

Group of orthologs #111. Best score 533 bits
Score difference with first non-orthologous sequence - L.major:533 P.pallidum:533

Q4QGX4              	100.00%		D3B1K5              	100.00%
Bootstrap support for Q4QGX4 as seed ortholog is 100%.
Bootstrap support for D3B1K5 as seed ortholog is 100%.

Group of orthologs #112. Best score 533 bits
Score difference with first non-orthologous sequence - L.major:533 P.pallidum:533

Q4QCW5              	100.00%		D3BDZ2              	100.00%
Bootstrap support for Q4QCW5 as seed ortholog is 100%.
Bootstrap support for D3BDZ2 as seed ortholog is 100%.

Group of orthologs #113. Best score 531 bits
Score difference with first non-orthologous sequence - L.major:531 P.pallidum:531

Q4Q6T6              	100.00%		D3B427              	100.00%
Bootstrap support for Q4Q6T6 as seed ortholog is 100%.
Bootstrap support for D3B427 as seed ortholog is 100%.

Group of orthologs #114. Best score 529 bits
Score difference with first non-orthologous sequence - L.major:529 P.pallidum:529

Q4QDS0              	100.00%		D3BRI9              	100.00%
Q4QDS1              	100.00%		
Bootstrap support for Q4QDS0 as seed ortholog is 100%.
Bootstrap support for Q4QDS1 as seed ortholog is 100%.
Bootstrap support for D3BRI9 as seed ortholog is 100%.

Group of orthologs #115. Best score 529 bits
Score difference with first non-orthologous sequence - L.major:529 P.pallidum:468

Q4Q5H2              	100.00%		D3BG39              	100.00%
Bootstrap support for Q4Q5H2 as seed ortholog is 100%.
Bootstrap support for D3BG39 as seed ortholog is 100%.

Group of orthologs #116. Best score 529 bits
Score difference with first non-orthologous sequence - L.major:529 P.pallidum:529

Q4QEL1              	100.00%		D3BMP9              	100.00%
Bootstrap support for Q4QEL1 as seed ortholog is 100%.
Bootstrap support for D3BMP9 as seed ortholog is 100%.

Group of orthologs #117. Best score 528 bits
Score difference with first non-orthologous sequence - L.major:528 P.pallidum:474

E9ADF8              	100.00%		D3BIJ3              	100.00%
E9ADF9              	99.63%		
Bootstrap support for E9ADF8 as seed ortholog is 100%.
Bootstrap support for D3BIJ3 as seed ortholog is 100%.

Group of orthologs #118. Best score 522 bits
Score difference with first non-orthologous sequence - L.major:347 P.pallidum:280

Q4QDN7              	100.00%		D3AZS5              	100.00%
Q4QDN8              	100.00%		
Bootstrap support for Q4QDN7 as seed ortholog is 100%.
Bootstrap support for Q4QDN8 as seed ortholog is 100%.
Bootstrap support for D3AZS5 as seed ortholog is 100%.

Group of orthologs #119. Best score 521 bits
Score difference with first non-orthologous sequence - L.major:521 P.pallidum:521

Q4Q828              	100.00%		D3B2S5              	100.00%
                    	       		D3BUR5              	100.00%
Bootstrap support for Q4Q828 as seed ortholog is 100%.
Bootstrap support for D3B2S5 as seed ortholog is 100%.
Bootstrap support for D3BUR5 as seed ortholog is 100%.

Group of orthologs #120. Best score 516 bits
Score difference with first non-orthologous sequence - L.major:516 P.pallidum:516

Q4Q1J6              	100.00%		D3BE82              	100.00%
Bootstrap support for Q4Q1J6 as seed ortholog is 100%.
Bootstrap support for D3BE82 as seed ortholog is 100%.

Group of orthologs #121. Best score 512 bits
Score difference with first non-orthologous sequence - L.major:512 P.pallidum:359

Q4Q063              	100.00%		D3B2K0              	100.00%
Bootstrap support for Q4Q063 as seed ortholog is 100%.
Bootstrap support for D3B2K0 as seed ortholog is 100%.

Group of orthologs #122. Best score 512 bits
Score difference with first non-orthologous sequence - L.major:512 P.pallidum:512

Q4QGS2              	100.00%		D3B5U3              	100.00%
Bootstrap support for Q4QGS2 as seed ortholog is 100%.
Bootstrap support for D3B5U3 as seed ortholog is 100%.

Group of orthologs #123. Best score 510 bits
Score difference with first non-orthologous sequence - L.major:510 P.pallidum:510

Q4QBT5              	100.00%		D3BPU8              	100.00%
Bootstrap support for Q4QBT5 as seed ortholog is 100%.
Bootstrap support for D3BPU8 as seed ortholog is 100%.

Group of orthologs #124. Best score 509 bits
Score difference with first non-orthologous sequence - L.major:41 P.pallidum:509

Q4Q3V3              	100.00%		D3BTG6              	100.00%
Bootstrap support for Q4Q3V3 as seed ortholog is 83%.
Bootstrap support for D3BTG6 as seed ortholog is 100%.

Group of orthologs #125. Best score 507 bits
Score difference with first non-orthologous sequence - L.major:507 P.pallidum:454

Q4QF36              	100.00%		D3B344              	100.00%
Bootstrap support for Q4QF36 as seed ortholog is 100%.
Bootstrap support for D3B344 as seed ortholog is 100%.

Group of orthologs #126. Best score 506 bits
Score difference with first non-orthologous sequence - L.major:506 P.pallidum:450

Q4QJG2              	100.00%		D3BQ59              	100.00%
Bootstrap support for Q4QJG2 as seed ortholog is 100%.
Bootstrap support for D3BQ59 as seed ortholog is 100%.

Group of orthologs #127. Best score 504 bits
Score difference with first non-orthologous sequence - L.major:158 P.pallidum:504

Q4QI01              	100.00%		D3BRF2              	100.00%
Bootstrap support for Q4QI01 as seed ortholog is 99%.
Bootstrap support for D3BRF2 as seed ortholog is 100%.

Group of orthologs #128. Best score 498 bits
Score difference with first non-orthologous sequence - L.major:223 P.pallidum:498

Q4Q826              	100.00%		D3BV25              	100.00%
Bootstrap support for Q4Q826 as seed ortholog is 99%.
Bootstrap support for D3BV25 as seed ortholog is 100%.

Group of orthologs #129. Best score 496 bits
Score difference with first non-orthologous sequence - L.major:496 P.pallidum:496

E9AE73              	100.00%		D3B3Q9              	100.00%
Bootstrap support for E9AE73 as seed ortholog is 100%.
Bootstrap support for D3B3Q9 as seed ortholog is 100%.

Group of orthologs #130. Best score 494 bits
Score difference with first non-orthologous sequence - L.major:494 P.pallidum:494

Q4QC07              	100.00%		D3AWX0              	100.00%
Bootstrap support for Q4QC07 as seed ortholog is 100%.
Bootstrap support for D3AWX0 as seed ortholog is 100%.

Group of orthologs #131. Best score 492 bits
Score difference with first non-orthologous sequence - L.major:492 P.pallidum:492

Q4Q800              	100.00%		D3BBR7              	100.00%
Bootstrap support for Q4Q800 as seed ortholog is 100%.
Bootstrap support for D3BBR7 as seed ortholog is 100%.

Group of orthologs #132. Best score 491 bits
Score difference with first non-orthologous sequence - L.major:491 P.pallidum:491

Q4QFL8              	100.00%		D3BP87              	100.00%
                    	       		D3BH75              	44.86%
Bootstrap support for Q4QFL8 as seed ortholog is 100%.
Bootstrap support for D3BP87 as seed ortholog is 100%.

Group of orthologs #133. Best score 491 bits
Score difference with first non-orthologous sequence - L.major:141 P.pallidum:58

Q4QFF7              	100.00%		D3BRU6              	100.00%
Bootstrap support for Q4QFF7 as seed ortholog is 99%.
Bootstrap support for D3BRU6 as seed ortholog is 90%.

Group of orthologs #134. Best score 490 bits
Score difference with first non-orthologous sequence - L.major:490 P.pallidum:490

Q4Q2Z4              	100.00%		D3BHK7              	100.00%
Bootstrap support for Q4Q2Z4 as seed ortholog is 100%.
Bootstrap support for D3BHK7 as seed ortholog is 100%.

Group of orthologs #135. Best score 487 bits
Score difference with first non-orthologous sequence - L.major:177 P.pallidum:487

Q4QAP2              	100.00%		D3BB39              	100.00%
Bootstrap support for Q4QAP2 as seed ortholog is 99%.
Bootstrap support for D3BB39 as seed ortholog is 100%.

Group of orthologs #136. Best score 487 bits
Score difference with first non-orthologous sequence - L.major:487 P.pallidum:487

Q9U0T7              	100.00%		D3BUL3              	100.00%
Bootstrap support for Q9U0T7 as seed ortholog is 100%.
Bootstrap support for D3BUL3 as seed ortholog is 100%.

Group of orthologs #137. Best score 485 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:288

Q4Q1P0              	100.00%		D3B6E1              	100.00%
Bootstrap support for Q4Q1P0 as seed ortholog is 99%.
Bootstrap support for D3B6E1 as seed ortholog is 100%.

Group of orthologs #138. Best score 485 bits
Score difference with first non-orthologous sequence - L.major:485 P.pallidum:485

Q4QAQ6              	100.00%		D3B2T4              	100.00%
Bootstrap support for Q4QAQ6 as seed ortholog is 100%.
Bootstrap support for D3B2T4 as seed ortholog is 100%.

Group of orthologs #139. Best score 483 bits
Score difference with first non-orthologous sequence - L.major:483 P.pallidum:483

Q4Q6U5              	100.00%		D3BUQ9              	100.00%
Bootstrap support for Q4Q6U5 as seed ortholog is 100%.
Bootstrap support for D3BUQ9 as seed ortholog is 100%.

Group of orthologs #140. Best score 477 bits
Score difference with first non-orthologous sequence - L.major:93 P.pallidum:103

Q4Q9W1              	100.00%		D3BKP8              	100.00%
Bootstrap support for Q4Q9W1 as seed ortholog is 99%.
Bootstrap support for D3BKP8 as seed ortholog is 99%.

Group of orthologs #141. Best score 473 bits
Score difference with first non-orthologous sequence - L.major:52 P.pallidum:473

Q4Q199              	100.00%		D3BRX9              	100.00%
Bootstrap support for Q4Q199 as seed ortholog is 81%.
Bootstrap support for D3BRX9 as seed ortholog is 100%.

Group of orthologs #142. Best score 472 bits
Score difference with first non-orthologous sequence - L.major:472 P.pallidum:472

Q4Q804              	100.00%		D3BBT9              	100.00%
Bootstrap support for Q4Q804 as seed ortholog is 100%.
Bootstrap support for D3BBT9 as seed ortholog is 100%.

Group of orthologs #143. Best score 472 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:217

Q4Q8K1              	100.00%		D3BBY9              	100.00%
Bootstrap support for Q4Q8K1 as seed ortholog is 99%.
Bootstrap support for D3BBY9 as seed ortholog is 100%.

Group of orthologs #144. Best score 471 bits
Score difference with first non-orthologous sequence - L.major:471 P.pallidum:471

Q4QCY4              	100.00%		D3B5W3              	100.00%
Bootstrap support for Q4QCY4 as seed ortholog is 100%.
Bootstrap support for D3B5W3 as seed ortholog is 100%.

Group of orthologs #145. Best score 469 bits
Score difference with first non-orthologous sequence - L.major:469 P.pallidum:469

Q4QHR7              	100.00%		D3B255              	100.00%
Q4QHR6              	23.91%		D3B915              	7.92%
Bootstrap support for Q4QHR7 as seed ortholog is 100%.
Bootstrap support for D3B255 as seed ortholog is 100%.

Group of orthologs #146. Best score 467 bits
Score difference with first non-orthologous sequence - L.major:318 P.pallidum:467

Q4Q2W6              	100.00%		D3BC91              	100.00%
Bootstrap support for Q4Q2W6 as seed ortholog is 100%.
Bootstrap support for D3BC91 as seed ortholog is 100%.

Group of orthologs #147. Best score 465 bits
Score difference with first non-orthologous sequence - L.major:320 P.pallidum:465

Q4Q3X8              	100.00%		D3BB49              	100.00%
                    	       		D3BUW0              	13.76%
Bootstrap support for Q4Q3X8 as seed ortholog is 100%.
Bootstrap support for D3BB49 as seed ortholog is 100%.

Group of orthologs #148. Best score 465 bits
Score difference with first non-orthologous sequence - L.major:180 P.pallidum:465

Q4QD53              	100.00%		D3BQJ8              	100.00%
Bootstrap support for Q4QD53 as seed ortholog is 100%.
Bootstrap support for D3BQJ8 as seed ortholog is 100%.

Group of orthologs #149. Best score 462 bits
Score difference with first non-orthologous sequence - L.major:462 P.pallidum:462

Q4QCR1              	100.00%		D3BC39              	100.00%
Bootstrap support for Q4QCR1 as seed ortholog is 100%.
Bootstrap support for D3BC39 as seed ortholog is 100%.

Group of orthologs #150. Best score 461 bits
Score difference with first non-orthologous sequence - L.major:347 P.pallidum:461

E9ACJ9              	100.00%		D3BHQ7              	100.00%
Bootstrap support for E9ACJ9 as seed ortholog is 100%.
Bootstrap support for D3BHQ7 as seed ortholog is 100%.

Group of orthologs #151. Best score 461 bits
Score difference with first non-orthologous sequence - L.major:313 P.pallidum:129

Q4QI28              	100.00%		D3B4W2              	100.00%
Bootstrap support for Q4QI28 as seed ortholog is 100%.
Bootstrap support for D3B4W2 as seed ortholog is 99%.

Group of orthologs #152. Best score 460 bits
Score difference with first non-orthologous sequence - L.major:205 P.pallidum:460

E9AEB2              	100.00%		D3AZ75              	100.00%
Bootstrap support for E9AEB2 as seed ortholog is 100%.
Bootstrap support for D3AZ75 as seed ortholog is 100%.

Group of orthologs #153. Best score 459 bits
Score difference with first non-orthologous sequence - L.major:459 P.pallidum:459

Q4QA33              	100.00%		D3B127              	100.00%
Bootstrap support for Q4QA33 as seed ortholog is 100%.
Bootstrap support for D3B127 as seed ortholog is 100%.

Group of orthologs #154. Best score 457 bits
Score difference with first non-orthologous sequence - L.major:457 P.pallidum:457

Q4Q3K1              	100.00%		D3BB07              	100.00%
Bootstrap support for Q4Q3K1 as seed ortholog is 100%.
Bootstrap support for D3BB07 as seed ortholog is 100%.

Group of orthologs #155. Best score 453 bits
Score difference with first non-orthologous sequence - L.major:453 P.pallidum:453

Q4Q8L7              	100.00%		D3AZD2              	100.00%
Bootstrap support for Q4Q8L7 as seed ortholog is 100%.
Bootstrap support for D3AZD2 as seed ortholog is 100%.

Group of orthologs #156. Best score 451 bits
Score difference with first non-orthologous sequence - L.major:451 P.pallidum:346

Q4Q2Z6              	100.00%		D3B5X2              	100.00%
Bootstrap support for Q4Q2Z6 as seed ortholog is 100%.
Bootstrap support for D3B5X2 as seed ortholog is 100%.

Group of orthologs #157. Best score 451 bits
Score difference with first non-orthologous sequence - L.major:451 P.pallidum:451

Q4Q2Q6              	100.00%		D3BK20              	100.00%
Bootstrap support for Q4Q2Q6 as seed ortholog is 100%.
Bootstrap support for D3BK20 as seed ortholog is 100%.

Group of orthologs #158. Best score 451 bits
Score difference with first non-orthologous sequence - L.major:394 P.pallidum:451

Q4QCC5              	100.00%		D3BB47              	100.00%
Bootstrap support for Q4QCC5 as seed ortholog is 100%.
Bootstrap support for D3BB47 as seed ortholog is 100%.

Group of orthologs #159. Best score 450 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:450

Q4Q3R6              	100.00%		D3B0M9              	100.00%
Bootstrap support for Q4Q3R6 as seed ortholog is 99%.
Bootstrap support for D3B0M9 as seed ortholog is 100%.

Group of orthologs #160. Best score 448 bits
Score difference with first non-orthologous sequence - L.major:448 P.pallidum:448

Q4Q2G5              	100.00%		D3BFI2              	100.00%
Bootstrap support for Q4Q2G5 as seed ortholog is 100%.
Bootstrap support for D3BFI2 as seed ortholog is 100%.

Group of orthologs #161. Best score 448 bits
Score difference with first non-orthologous sequence - L.major:448 P.pallidum:448

Q4QAR0              	100.00%		D3BBV3              	100.00%
Bootstrap support for Q4QAR0 as seed ortholog is 100%.
Bootstrap support for D3BBV3 as seed ortholog is 100%.

Group of orthologs #162. Best score 446 bits
Score difference with first non-orthologous sequence - L.major:446 P.pallidum:367

E9AFH5              	100.00%		D3BHH0              	100.00%
Bootstrap support for E9AFH5 as seed ortholog is 100%.
Bootstrap support for D3BHH0 as seed ortholog is 100%.

Group of orthologs #163. Best score 446 bits
Score difference with first non-orthologous sequence - L.major:446 P.pallidum:446

Q7YWB6              	100.00%		D3BNP6              	100.00%
Bootstrap support for Q7YWB6 as seed ortholog is 100%.
Bootstrap support for D3BNP6 as seed ortholog is 100%.

Group of orthologs #164. Best score 445 bits
Score difference with first non-orthologous sequence - L.major:445 P.pallidum:270

E9AE78              	100.00%		D3AVV8              	100.00%
Bootstrap support for E9AE78 as seed ortholog is 100%.
Bootstrap support for D3AVV8 as seed ortholog is 100%.

Group of orthologs #165. Best score 445 bits
Score difference with first non-orthologous sequence - L.major:273 P.pallidum:445

Q4Q080              	100.00%		D3BPJ2              	100.00%
Bootstrap support for Q4Q080 as seed ortholog is 100%.
Bootstrap support for D3BPJ2 as seed ortholog is 100%.

Group of orthologs #166. Best score 444 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:256

Q4Q204              	100.00%		D3BM62              	100.00%
Bootstrap support for Q4Q204 as seed ortholog is 99%.
Bootstrap support for D3BM62 as seed ortholog is 100%.

Group of orthologs #167. Best score 443 bits
Score difference with first non-orthologous sequence - L.major:443 P.pallidum:362

Q4Q6W5              	100.00%		D3B9H8              	100.00%
Bootstrap support for Q4Q6W5 as seed ortholog is 100%.
Bootstrap support for D3B9H8 as seed ortholog is 100%.

Group of orthologs #168. Best score 443 bits
Score difference with first non-orthologous sequence - L.major:105 P.pallidum:386

O61127              	100.00%		D3BI15              	100.00%
Bootstrap support for O61127 as seed ortholog is 99%.
Bootstrap support for D3BI15 as seed ortholog is 100%.

Group of orthologs #169. Best score 443 bits
Score difference with first non-orthologous sequence - L.major:443 P.pallidum:443

Q4Q420              	100.00%		D3BF15              	100.00%
Bootstrap support for Q4Q420 as seed ortholog is 100%.
Bootstrap support for D3BF15 as seed ortholog is 100%.

Group of orthologs #170. Best score 443 bits
Score difference with first non-orthologous sequence - L.major:54 P.pallidum:209

O62591              	100.00%		D3BMB3              	100.00%
Bootstrap support for O62591 as seed ortholog is 94%.
Bootstrap support for D3BMB3 as seed ortholog is 100%.

Group of orthologs #171. Best score 443 bits
Score difference with first non-orthologous sequence - L.major:332 P.pallidum:443

Q4Q2K0              	100.00%		D3BQM7              	100.00%
Bootstrap support for Q4Q2K0 as seed ortholog is 100%.
Bootstrap support for D3BQM7 as seed ortholog is 100%.

Group of orthologs #172. Best score 443 bits
Score difference with first non-orthologous sequence - L.major:296 P.pallidum:443

Q4QAA2              	100.00%		D3BKQ8              	100.00%
Bootstrap support for Q4QAA2 as seed ortholog is 100%.
Bootstrap support for D3BKQ8 as seed ortholog is 100%.

Group of orthologs #173. Best score 441 bits
Score difference with first non-orthologous sequence - L.major:441 P.pallidum:441

Q4QAC4              	100.00%		D3BUD8              	100.00%
Bootstrap support for Q4QAC4 as seed ortholog is 100%.
Bootstrap support for D3BUD8 as seed ortholog is 100%.

Group of orthologs #174. Best score 440 bits
Score difference with first non-orthologous sequence - L.major:440 P.pallidum:440

Q4QDM2              	100.00%		D3AY16              	100.00%
Bootstrap support for Q4QDM2 as seed ortholog is 100%.
Bootstrap support for D3AY16 as seed ortholog is 100%.

Group of orthologs #175. Best score 439 bits
Score difference with first non-orthologous sequence - L.major:439 P.pallidum:439

Q9Y0F3              	100.00%		D3BKC2              	100.00%
                    	       		D3B588              	13.70%
Bootstrap support for Q9Y0F3 as seed ortholog is 100%.
Bootstrap support for D3BKC2 as seed ortholog is 100%.

Group of orthologs #176. Best score 434 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:434

E9ADK8              	100.00%		D3B072              	100.00%
Bootstrap support for E9ADK8 as seed ortholog is 99%.
Bootstrap support for D3B072 as seed ortholog is 100%.

Group of orthologs #177. Best score 432 bits
Score difference with first non-orthologous sequence - L.major:432 P.pallidum:432

Q4QIT4              	100.00%		D3BQU1              	100.00%
Bootstrap support for Q4QIT4 as seed ortholog is 100%.
Bootstrap support for D3BQU1 as seed ortholog is 100%.

Group of orthologs #178. Best score 431 bits
Score difference with first non-orthologous sequence - L.major:431 P.pallidum:431

E9AEK9              	100.00%		D3B5Y1              	100.00%
Bootstrap support for E9AEK9 as seed ortholog is 100%.
Bootstrap support for D3B5Y1 as seed ortholog is 100%.

Group of orthologs #179. Best score 430 bits
Score difference with first non-orthologous sequence - L.major:430 P.pallidum:430

E9ADE5              	100.00%		D3BMK3              	100.00%
Bootstrap support for E9ADE5 as seed ortholog is 100%.
Bootstrap support for D3BMK3 as seed ortholog is 100%.

Group of orthologs #180. Best score 428 bits
Score difference with first non-orthologous sequence - L.major:428 P.pallidum:428

Q4QH39              	100.00%		D3BN75              	100.00%
Bootstrap support for Q4QH39 as seed ortholog is 100%.
Bootstrap support for D3BN75 as seed ortholog is 100%.

Group of orthologs #181. Best score 428 bits
Score difference with first non-orthologous sequence - L.major:428 P.pallidum:232

Q4QJF6              	100.00%		D3BNT7              	100.00%
Bootstrap support for Q4QJF6 as seed ortholog is 100%.
Bootstrap support for D3BNT7 as seed ortholog is 100%.

Group of orthologs #182. Best score 427 bits
Score difference with first non-orthologous sequence - L.major:185 P.pallidum:252

Q4Q702              	100.00%		D3BKN4              	100.00%
Bootstrap support for Q4Q702 as seed ortholog is 99%.
Bootstrap support for D3BKN4 as seed ortholog is 100%.

Group of orthologs #183. Best score 426 bits
Score difference with first non-orthologous sequence - L.major:240 P.pallidum:195

E9ACV1              	100.00%		D3AY64              	100.00%
Bootstrap support for E9ACV1 as seed ortholog is 100%.
Bootstrap support for D3AY64 as seed ortholog is 100%.

Group of orthologs #184. Best score 426 bits
Score difference with first non-orthologous sequence - L.major:426 P.pallidum:161

E9AFD2              	100.00%		D3BT28              	100.00%
Bootstrap support for E9AFD2 as seed ortholog is 100%.
Bootstrap support for D3BT28 as seed ortholog is 99%.

Group of orthologs #185. Best score 425 bits
Score difference with first non-orthologous sequence - L.major:425 P.pallidum:425

E9ADI5              	100.00%		D3BUD7              	100.00%
Q4QBL8              	100.00%		D3BKB8              	29.92%
Bootstrap support for E9ADI5 as seed ortholog is 100%.
Bootstrap support for Q4QBL8 as seed ortholog is 100%.
Bootstrap support for D3BUD7 as seed ortholog is 100%.

Group of orthologs #186. Best score 425 bits
Score difference with first non-orthologous sequence - L.major:263 P.pallidum:425

Q4QE27              	100.00%		D3BM76              	100.00%
Bootstrap support for Q4QE27 as seed ortholog is 100%.
Bootstrap support for D3BM76 as seed ortholog is 100%.

Group of orthologs #187. Best score 424 bits
Score difference with first non-orthologous sequence - L.major:230 P.pallidum:164

Q4QIQ9              	100.00%		D3BB29              	100.00%
Bootstrap support for Q4QIQ9 as seed ortholog is 100%.
Bootstrap support for D3BB29 as seed ortholog is 99%.

Group of orthologs #188. Best score 422 bits
Score difference with first non-orthologous sequence - L.major:422 P.pallidum:147

Q4Q2K1              	100.00%		D3BEC2              	100.00%
Bootstrap support for Q4Q2K1 as seed ortholog is 100%.
Bootstrap support for D3BEC2 as seed ortholog is 99%.

Group of orthologs #189. Best score 422 bits
Score difference with first non-orthologous sequence - L.major:422 P.pallidum:422

Q4QCD3              	100.00%		D3BH29              	100.00%
Bootstrap support for Q4QCD3 as seed ortholog is 100%.
Bootstrap support for D3BH29 as seed ortholog is 100%.

Group of orthologs #190. Best score 421 bits
Score difference with first non-orthologous sequence - L.major:421 P.pallidum:421

E9AC78              	100.00%		D3B7I3              	100.00%
Q4Q9J5              	78.85%		
Bootstrap support for E9AC78 as seed ortholog is 100%.
Bootstrap support for D3B7I3 as seed ortholog is 100%.

Group of orthologs #191. Best score 421 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:295

E9AF97              	100.00%		D3BNV2              	100.00%
Bootstrap support for E9AF97 as seed ortholog is 100%.
Bootstrap support for D3BNV2 as seed ortholog is 100%.

Group of orthologs #192. Best score 420 bits
Score difference with first non-orthologous sequence - L.major:420 P.pallidum:420

E9AG04              	100.00%		D3BMS6              	100.00%
Bootstrap support for E9AG04 as seed ortholog is 100%.
Bootstrap support for D3BMS6 as seed ortholog is 100%.

Group of orthologs #193. Best score 419 bits
Score difference with first non-orthologous sequence - L.major:65 P.pallidum:127

Q4Q7R2              	100.00%		D3BEH3              	100.00%
Bootstrap support for Q4Q7R2 as seed ortholog is 91%.
Bootstrap support for D3BEH3 as seed ortholog is 98%.

Group of orthologs #194. Best score 418 bits
Score difference with first non-orthologous sequence - L.major:190 P.pallidum:127

Q4Q5P5              	100.00%		D3BSG3              	100.00%
E9AFD4              	7.23%		
Bootstrap support for Q4Q5P5 as seed ortholog is 99%.
Bootstrap support for D3BSG3 as seed ortholog is 98%.

Group of orthologs #195. Best score 418 bits
Score difference with first non-orthologous sequence - L.major:418 P.pallidum:418

Q4QIN2              	100.00%		D3B9J3              	100.00%
Bootstrap support for Q4QIN2 as seed ortholog is 100%.
Bootstrap support for D3B9J3 as seed ortholog is 100%.

Group of orthologs #196. Best score 418 bits
Score difference with first non-orthologous sequence - L.major:418 P.pallidum:418

Q4Q983              	100.00%		D3BUH1              	100.00%
Bootstrap support for Q4Q983 as seed ortholog is 100%.
Bootstrap support for D3BUH1 as seed ortholog is 100%.

Group of orthologs #197. Best score 416 bits
Score difference with first non-orthologous sequence - L.major:416 P.pallidum:416

Q4Q6Q4              	100.00%		D3AXJ0              	100.00%
Bootstrap support for Q4Q6Q4 as seed ortholog is 100%.
Bootstrap support for D3AXJ0 as seed ortholog is 100%.

Group of orthologs #198. Best score 416 bits
Score difference with first non-orthologous sequence - L.major:357 P.pallidum:312

Q4QAA4              	100.00%		D3B3C8              	100.00%
Bootstrap support for Q4QAA4 as seed ortholog is 100%.
Bootstrap support for D3B3C8 as seed ortholog is 100%.

Group of orthologs #199. Best score 415 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:371

Q9NHE1              	100.00%		D3BDA3              	100.00%
Q9NHE2              	9.90%		
Bootstrap support for Q9NHE1 as seed ortholog is 99%.
Bootstrap support for D3BDA3 as seed ortholog is 100%.

Group of orthologs #200. Best score 414 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:204

Q4Q9Y1              	100.00%		D3BRC2              	100.00%
Bootstrap support for Q4Q9Y1 as seed ortholog is 99%.
Bootstrap support for D3BRC2 as seed ortholog is 99%.

Group of orthologs #201. Best score 412 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:157

Q4Q9G1              	100.00%		D3B8Z2              	100.00%
                    	       		D3BQ49              	29.13%
                    	       		D3BLZ8              	21.37%
Bootstrap support for Q4Q9G1 as seed ortholog is 95%.
Bootstrap support for D3B8Z2 as seed ortholog is 99%.

Group of orthologs #202. Best score 411 bits
Score difference with first non-orthologous sequence - L.major:411 P.pallidum:411

Q4QDB1              	100.00%		D3BMN8              	100.00%
Bootstrap support for Q4QDB1 as seed ortholog is 100%.
Bootstrap support for D3BMN8 as seed ortholog is 100%.

Group of orthologs #203. Best score 410 bits
Score difference with first non-orthologous sequence - L.major:410 P.pallidum:410

Q4QA34              	100.00%		D3B7S0              	100.00%
Bootstrap support for Q4QA34 as seed ortholog is 100%.
Bootstrap support for D3B7S0 as seed ortholog is 100%.

Group of orthologs #204. Best score 408 bits
Score difference with first non-orthologous sequence - L.major:272 P.pallidum:408

Q4Q3Q6              	100.00%		D3AVT5              	100.00%
Bootstrap support for Q4Q3Q6 as seed ortholog is 99%.
Bootstrap support for D3AVT5 as seed ortholog is 100%.

Group of orthologs #205. Best score 408 bits
Score difference with first non-orthologous sequence - L.major:24 P.pallidum:45

Q4Q4W8              	100.00%		D3B2M8              	100.00%
Bootstrap support for Q4Q4W8 as seed ortholog is 75%.
Bootstrap support for D3B2M8 as seed ortholog is 92%.

Group of orthologs #206. Best score 408 bits
Score difference with first non-orthologous sequence - L.major:408 P.pallidum:408

Q4QBC9              	100.00%		D3B421              	100.00%
Bootstrap support for Q4QBC9 as seed ortholog is 100%.
Bootstrap support for D3B421 as seed ortholog is 100%.

Group of orthologs #207. Best score 408 bits
Score difference with first non-orthologous sequence - L.major:408 P.pallidum:408

E9ACF1              	100.00%		D3BSP0              	100.00%
Bootstrap support for E9ACF1 as seed ortholog is 100%.
Bootstrap support for D3BSP0 as seed ortholog is 100%.

Group of orthologs #208. Best score 406 bits
Score difference with first non-orthologous sequence - L.major:305 P.pallidum:211

Q4Q8T8              	100.00%		D3AXU9              	100.00%
Bootstrap support for Q4Q8T8 as seed ortholog is 100%.
Bootstrap support for D3AXU9 as seed ortholog is 99%.

Group of orthologs #209. Best score 402 bits
Score difference with first non-orthologous sequence - L.major:402 P.pallidum:264

Q4Q7B4              	100.00%		D3AXY2              	100.00%
Bootstrap support for Q4Q7B4 as seed ortholog is 100%.
Bootstrap support for D3AXY2 as seed ortholog is 100%.

Group of orthologs #210. Best score 399 bits
Score difference with first non-orthologous sequence - L.major:399 P.pallidum:399

Q4QDV9              	100.00%		D3BQX1              	100.00%
Bootstrap support for Q4QDV9 as seed ortholog is 100%.
Bootstrap support for D3BQX1 as seed ortholog is 100%.

Group of orthologs #211. Best score 397 bits
Score difference with first non-orthologous sequence - L.major:397 P.pallidum:343

Q4Q1C4              	100.00%		D3B6H9              	100.00%
                    	       		D3B3G3              	18.92%
Bootstrap support for Q4Q1C4 as seed ortholog is 100%.
Bootstrap support for D3B6H9 as seed ortholog is 100%.

Group of orthologs #212. Best score 397 bits
Score difference with first non-orthologous sequence - L.major:397 P.pallidum:308

Q4QIG8              	100.00%		D3AYX0              	100.00%
Bootstrap support for Q4QIG8 as seed ortholog is 100%.
Bootstrap support for D3AYX0 as seed ortholog is 100%.

Group of orthologs #213. Best score 395 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:257

E9AEZ4              	100.00%		D3B471              	100.00%
Bootstrap support for E9AEZ4 as seed ortholog is 99%.
Bootstrap support for D3B471 as seed ortholog is 100%.

Group of orthologs #214. Best score 394 bits
Score difference with first non-orthologous sequence - L.major:218 P.pallidum:152

Q4Q4D7              	100.00%		D3AVS0              	100.00%
Bootstrap support for Q4Q4D7 as seed ortholog is 99%.
Bootstrap support for D3AVS0 as seed ortholog is 99%.

Group of orthologs #215. Best score 393 bits
Score difference with first non-orthologous sequence - L.major:162 P.pallidum:107

Q9GNR4              	100.00%		D3B9A5              	100.00%
E9AFM1              	74.54%		
Q27687              	8.14%		
Bootstrap support for Q9GNR4 as seed ortholog is 100%.
Bootstrap support for D3B9A5 as seed ortholog is 99%.

Group of orthologs #216. Best score 393 bits
Score difference with first non-orthologous sequence - L.major:393 P.pallidum:393

Q4Q401              	100.00%		D3BNF4              	100.00%
Bootstrap support for Q4Q401 as seed ortholog is 100%.
Bootstrap support for D3BNF4 as seed ortholog is 100%.

Group of orthologs #217. Best score 390 bits
Score difference with first non-orthologous sequence - L.major:390 P.pallidum:312

Q4QDX3              	100.00%		D3B4P1              	100.00%
Q4QDX2              	91.10%		
Bootstrap support for Q4QDX3 as seed ortholog is 100%.
Bootstrap support for D3B4P1 as seed ortholog is 100%.

Group of orthologs #218. Best score 390 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:390

Q4Q0B5              	100.00%		D3B474              	100.00%
Bootstrap support for Q4Q0B5 as seed ortholog is 95%.
Bootstrap support for D3B474 as seed ortholog is 100%.

Group of orthologs #219. Best score 390 bits
Score difference with first non-orthologous sequence - L.major:390 P.pallidum:224

Q4QBG5              	100.00%		D3BCL5              	100.00%
Bootstrap support for Q4QBG5 as seed ortholog is 100%.
Bootstrap support for D3BCL5 as seed ortholog is 100%.

Group of orthologs #220. Best score 388 bits
Score difference with first non-orthologous sequence - L.major:388 P.pallidum:388

Q4QFJ7              	100.00%		D3BAK8              	100.00%
Bootstrap support for Q4QFJ7 as seed ortholog is 100%.
Bootstrap support for D3BAK8 as seed ortholog is 100%.

Group of orthologs #221. Best score 387 bits
Score difference with first non-orthologous sequence - L.major:387 P.pallidum:387

Q4QGN9              	100.00%		D3BPW9              	100.00%
Bootstrap support for Q4QGN9 as seed ortholog is 100%.
Bootstrap support for D3BPW9 as seed ortholog is 100%.

Group of orthologs #222. Best score 386 bits
Score difference with first non-orthologous sequence - L.major:386 P.pallidum:386

Q4QGN0              	100.00%		D3BE54              	100.00%
                    	       		D3BBB8              	23.56%
Bootstrap support for Q4QGN0 as seed ortholog is 100%.
Bootstrap support for D3BE54 as seed ortholog is 100%.

Group of orthologs #223. Best score 386 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:219

Q4Q8D5              	100.00%		D3BK57              	100.00%
Bootstrap support for Q4Q8D5 as seed ortholog is 99%.
Bootstrap support for D3BK57 as seed ortholog is 100%.

Group of orthologs #224. Best score 384 bits
Score difference with first non-orthologous sequence - L.major:384 P.pallidum:384

Q4QFM2              	100.00%		D3AYN2              	100.00%
Q4QFM4              	17.00%		
Q4Q3D8              	14.36%		
Bootstrap support for Q4QFM2 as seed ortholog is 100%.
Bootstrap support for D3AYN2 as seed ortholog is 100%.

Group of orthologs #225. Best score 383 bits
Score difference with first non-orthologous sequence - L.major:383 P.pallidum:383

Q4QHJ7              	100.00%		D3BCL2              	100.00%
Bootstrap support for Q4QHJ7 as seed ortholog is 100%.
Bootstrap support for D3BCL2 as seed ortholog is 100%.

Group of orthologs #226. Best score 381 bits
Score difference with first non-orthologous sequence - L.major:31 P.pallidum:306

Q4Q399              	100.00%		D3B4Y9              	100.00%
                    	       		D3BDW2              	22.31%
Bootstrap support for Q4Q399 as seed ortholog is 74%.
Alternative seed ortholog is Q4QDY0 (31 bits away from this cluster)
Bootstrap support for D3B4Y9 as seed ortholog is 100%.

Group of orthologs #227. Best score 381 bits
Score difference with first non-orthologous sequence - L.major:381 P.pallidum:381

Q4QE53              	100.00%		D3B3B2              	100.00%
Bootstrap support for Q4QE53 as seed ortholog is 100%.
Bootstrap support for D3B3B2 as seed ortholog is 100%.

Group of orthologs #228. Best score 380 bits
Score difference with first non-orthologous sequence - L.major:380 P.pallidum:380

Q4Q5U4              	100.00%		D3BED6              	100.00%
Bootstrap support for Q4Q5U4 as seed ortholog is 100%.
Bootstrap support for D3BED6 as seed ortholog is 100%.

Group of orthologs #229. Best score 380 bits
Score difference with first non-orthologous sequence - L.major:380 P.pallidum:380

Q4QH70              	100.00%		D3BEX2              	100.00%
Bootstrap support for Q4QH70 as seed ortholog is 100%.
Bootstrap support for D3BEX2 as seed ortholog is 100%.

Group of orthologs #230. Best score 379 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:70

Q4QBN3              	100.00%		D3B3K7              	100.00%
Bootstrap support for Q4QBN3 as seed ortholog is 99%.
Bootstrap support for D3B3K7 as seed ortholog is 95%.

Group of orthologs #231. Best score 378 bits
Score difference with first non-orthologous sequence - L.major:378 P.pallidum:378

E9AE98              	100.00%		D3BEF1              	100.00%
Bootstrap support for E9AE98 as seed ortholog is 100%.
Bootstrap support for D3BEF1 as seed ortholog is 100%.

Group of orthologs #232. Best score 378 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:378

Q4QFH5              	100.00%		D3AZX3              	100.00%
Bootstrap support for Q4QFH5 as seed ortholog is 85%.
Bootstrap support for D3AZX3 as seed ortholog is 100%.

Group of orthologs #233. Best score 378 bits
Score difference with first non-orthologous sequence - L.major:378 P.pallidum:378

Q4Q997              	100.00%		D3B866              	100.00%
Bootstrap support for Q4Q997 as seed ortholog is 100%.
Bootstrap support for D3B866 as seed ortholog is 100%.

Group of orthologs #234. Best score 378 bits
Score difference with first non-orthologous sequence - L.major:191 P.pallidum:217

Q4QEG9              	100.00%		D3BRT1              	100.00%
Bootstrap support for Q4QEG9 as seed ortholog is 100%.
Bootstrap support for D3BRT1 as seed ortholog is 100%.

Group of orthologs #235. Best score 377 bits
Score difference with first non-orthologous sequence - L.major:377 P.pallidum:377

E9AE82              	100.00%		D3B0J2              	100.00%
Bootstrap support for E9AE82 as seed ortholog is 100%.
Bootstrap support for D3B0J2 as seed ortholog is 100%.

Group of orthologs #236. Best score 377 bits
Score difference with first non-orthologous sequence - L.major:180 P.pallidum:72

Q4QGW5              	100.00%		D3B568              	100.00%
Bootstrap support for Q4QGW5 as seed ortholog is 99%.
Bootstrap support for D3B568 as seed ortholog is 85%.

Group of orthologs #237. Best score 376 bits
Score difference with first non-orthologous sequence - L.major:47 P.pallidum:376

E9AE64              	100.00%		D3B5B2              	100.00%
Bootstrap support for E9AE64 as seed ortholog is 90%.
Bootstrap support for D3B5B2 as seed ortholog is 100%.

Group of orthologs #238. Best score 376 bits
Score difference with first non-orthologous sequence - L.major:376 P.pallidum:376

Q4QAK3              	100.00%		D3BEU5              	100.00%
Bootstrap support for Q4QAK3 as seed ortholog is 100%.
Bootstrap support for D3BEU5 as seed ortholog is 100%.

Group of orthologs #239. Best score 375 bits
Score difference with first non-orthologous sequence - L.major:375 P.pallidum:375

Q4Q0E8              	100.00%		D3AVG7              	100.00%
Bootstrap support for Q4Q0E8 as seed ortholog is 100%.
Bootstrap support for D3AVG7 as seed ortholog is 100%.

Group of orthologs #240. Best score 375 bits
Score difference with first non-orthologous sequence - L.major:126 P.pallidum:188

Q4QDQ2              	100.00%		D3AVW9              	100.00%
Bootstrap support for Q4QDQ2 as seed ortholog is 97%.
Bootstrap support for D3AVW9 as seed ortholog is 99%.

Group of orthologs #241. Best score 374 bits
Score difference with first non-orthologous sequence - L.major:374 P.pallidum:374

E9AEI0              	100.00%		D3B0M1              	100.00%
E9AEH9              	76.91%		
Bootstrap support for E9AEI0 as seed ortholog is 100%.
Bootstrap support for D3B0M1 as seed ortholog is 100%.

Group of orthologs #242. Best score 374 bits
Score difference with first non-orthologous sequence - L.major:374 P.pallidum:374

Q4QB82              	100.00%		D3AZP8              	100.00%
Bootstrap support for Q4QB82 as seed ortholog is 100%.
Bootstrap support for D3AZP8 as seed ortholog is 100%.

Group of orthologs #243. Best score 373 bits
Score difference with first non-orthologous sequence - L.major:309 P.pallidum:2

Q4Q4W3              	100.00%		D3AVP3              	100.00%
Bootstrap support for Q4Q4W3 as seed ortholog is 100%.
Bootstrap support for D3AVP3 as seed ortholog is 48%.
Alternative seed ortholog is D3B4X1 (2 bits away from this cluster)

Group of orthologs #244. Best score 372 bits
Score difference with first non-orthologous sequence - L.major:372 P.pallidum:372

Q4Q2E4              	100.00%		D3AZW1              	100.00%
Bootstrap support for Q4Q2E4 as seed ortholog is 100%.
Bootstrap support for D3AZW1 as seed ortholog is 100%.

Group of orthologs #245. Best score 372 bits
Score difference with first non-orthologous sequence - L.major:372 P.pallidum:372

E9ADW5              	100.00%		D3BJC7              	100.00%
Bootstrap support for E9ADW5 as seed ortholog is 100%.
Bootstrap support for D3BJC7 as seed ortholog is 100%.

Group of orthologs #246. Best score 371 bits
Score difference with first non-orthologous sequence - L.major:371 P.pallidum:250

Q4QCD2              	100.00%		D3B9T8              	100.00%
Bootstrap support for Q4QCD2 as seed ortholog is 100%.
Bootstrap support for D3B9T8 as seed ortholog is 100%.

Group of orthologs #247. Best score 369 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:369

Q4Q1E9              	100.00%		D3BAR8              	100.00%
Bootstrap support for Q4Q1E9 as seed ortholog is 97%.
Bootstrap support for D3BAR8 as seed ortholog is 100%.

Group of orthologs #248. Best score 369 bits
Score difference with first non-orthologous sequence - L.major:122 P.pallidum:160

Q4QC38              	100.00%		D3BNB9              	100.00%
Bootstrap support for Q4QC38 as seed ortholog is 99%.
Bootstrap support for D3BNB9 as seed ortholog is 99%.

Group of orthologs #249. Best score 368 bits
Score difference with first non-orthologous sequence - L.major:368 P.pallidum:281

Q4QI58              	100.00%		D3AWT2              	100.00%
Bootstrap support for Q4QI58 as seed ortholog is 100%.
Bootstrap support for D3AWT2 as seed ortholog is 100%.

Group of orthologs #250. Best score 368 bits
Score difference with first non-orthologous sequence - L.major:368 P.pallidum:368

Q4QEF9              	100.00%		D3BKG1              	100.00%
Bootstrap support for Q4QEF9 as seed ortholog is 100%.
Bootstrap support for D3BKG1 as seed ortholog is 100%.

Group of orthologs #251. Best score 368 bits
Score difference with first non-orthologous sequence - L.major:368 P.pallidum:248

Q4QJI5              	100.00%		D3BM03              	100.00%
Bootstrap support for Q4QJI5 as seed ortholog is 100%.
Bootstrap support for D3BM03 as seed ortholog is 100%.

Group of orthologs #252. Best score 367 bits
Score difference with first non-orthologous sequence - L.major:367 P.pallidum:367

E9ADH8              	100.00%		D3AZ34              	100.00%
Bootstrap support for E9ADH8 as seed ortholog is 100%.
Bootstrap support for D3AZ34 as seed ortholog is 100%.

Group of orthologs #253. Best score 366 bits
Score difference with first non-orthologous sequence - L.major:193 P.pallidum:366

Q4Q9R8              	100.00%		D3BCH5              	100.00%
Bootstrap support for Q4Q9R8 as seed ortholog is 100%.
Bootstrap support for D3BCH5 as seed ortholog is 100%.

Group of orthologs #254. Best score 366 bits
Score difference with first non-orthologous sequence - L.major:366 P.pallidum:260

Q4Q822              	100.00%		D3BV44              	100.00%
Bootstrap support for Q4Q822 as seed ortholog is 100%.
Bootstrap support for D3BV44 as seed ortholog is 100%.

Group of orthologs #255. Best score 366 bits
Score difference with first non-orthologous sequence - L.major:366 P.pallidum:366

Q4QIG0              	100.00%		D3BUZ4              	100.00%
Bootstrap support for Q4QIG0 as seed ortholog is 100%.
Bootstrap support for D3BUZ4 as seed ortholog is 100%.

Group of orthologs #256. Best score 365 bits
Score difference with first non-orthologous sequence - L.major:365 P.pallidum:365

Q6WRI4              	100.00%		D3BKZ8              	100.00%
Bootstrap support for Q6WRI4 as seed ortholog is 100%.
Bootstrap support for D3BKZ8 as seed ortholog is 100%.

Group of orthologs #257. Best score 363 bits
Score difference with first non-orthologous sequence - L.major:281 P.pallidum:131

Q4Q7J1              	100.00%		D3AZ87              	100.00%
                    	       		D3BGZ3              	10.68%
Bootstrap support for Q4Q7J1 as seed ortholog is 100%.
Bootstrap support for D3AZ87 as seed ortholog is 99%.

Group of orthologs #258. Best score 363 bits
Score difference with first non-orthologous sequence - L.major:177 P.pallidum:148

Q4QIG1              	100.00%		D3BBD1              	100.00%
Bootstrap support for Q4QIG1 as seed ortholog is 99%.
Bootstrap support for D3BBD1 as seed ortholog is 99%.

Group of orthologs #259. Best score 362 bits
Score difference with first non-orthologous sequence - L.major:362 P.pallidum:145

Q4QDG7              	100.00%		D3AZS9              	100.00%
Bootstrap support for Q4QDG7 as seed ortholog is 100%.
Bootstrap support for D3AZS9 as seed ortholog is 99%.

Group of orthologs #260. Best score 362 bits
Score difference with first non-orthologous sequence - L.major:362 P.pallidum:362

Q4QG78              	100.00%		D3BPB4              	100.00%
Bootstrap support for Q4QG78 as seed ortholog is 100%.
Bootstrap support for D3BPB4 as seed ortholog is 100%.

Group of orthologs #261. Best score 361 bits
Score difference with first non-orthologous sequence - L.major:361 P.pallidum:361

Q4QF42              	100.00%		D3AY91              	100.00%
Bootstrap support for Q4QF42 as seed ortholog is 100%.
Bootstrap support for D3AY91 as seed ortholog is 100%.

Group of orthologs #262. Best score 361 bits
Score difference with first non-orthologous sequence - L.major:361 P.pallidum:208

E9AF59              	100.00%		D3BP59              	100.00%
Bootstrap support for E9AF59 as seed ortholog is 100%.
Bootstrap support for D3BP59 as seed ortholog is 99%.

Group of orthologs #263. Best score 361 bits
Score difference with first non-orthologous sequence - L.major:361 P.pallidum:361

Q4QF87              	100.00%		D3BCL1              	100.00%
Bootstrap support for Q4QF87 as seed ortholog is 100%.
Bootstrap support for D3BCL1 as seed ortholog is 100%.

Group of orthologs #264. Best score 360 bits
Score difference with first non-orthologous sequence - L.major:360 P.pallidum:360

Q4Q5S8              	100.00%		D3BQ08              	100.00%
Bootstrap support for Q4Q5S8 as seed ortholog is 100%.
Bootstrap support for D3BQ08 as seed ortholog is 100%.

Group of orthologs #265. Best score 359 bits
Score difference with first non-orthologous sequence - L.major:80 P.pallidum:197

Q4Q1N9              	100.00%		D3BK58              	100.00%
Bootstrap support for Q4Q1N9 as seed ortholog is 98%.
Bootstrap support for D3BK58 as seed ortholog is 100%.

Group of orthologs #266. Best score 359 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:125

Q4QC88              	100.00%		D3BMU7              	100.00%
Bootstrap support for Q4QC88 as seed ortholog is 99%.
Bootstrap support for D3BMU7 as seed ortholog is 99%.

Group of orthologs #267. Best score 358 bits
Score difference with first non-orthologous sequence - L.major:358 P.pallidum:358

Q4QDI6              	100.00%		D3B481              	100.00%
Bootstrap support for Q4QDI6 as seed ortholog is 100%.
Bootstrap support for D3B481 as seed ortholog is 100%.

Group of orthologs #268. Best score 356 bits
Score difference with first non-orthologous sequence - L.major:117 P.pallidum:200

Q9NF95              	100.00%		D3BAX3              	100.00%
                    	       		D3B6W9              	51.46%
                    	       		D3AZC2              	6.50%
Bootstrap support for Q9NF95 as seed ortholog is 98%.
Bootstrap support for D3BAX3 as seed ortholog is 99%.

Group of orthologs #269. Best score 356 bits
Score difference with first non-orthologous sequence - L.major:356 P.pallidum:356

Q4Q6P5              	100.00%		D3BMN0              	100.00%
Bootstrap support for Q4Q6P5 as seed ortholog is 100%.
Bootstrap support for D3BMN0 as seed ortholog is 100%.

Group of orthologs #270. Best score 354 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:132

Q4Q8E2              	100.00%		D3B528              	100.00%
Bootstrap support for Q4Q8E2 as seed ortholog is 99%.
Bootstrap support for D3B528 as seed ortholog is 99%.

Group of orthologs #271. Best score 354 bits
Score difference with first non-orthologous sequence - L.major:354 P.pallidum:92

Q4Q758              	100.00%		D3B6F1              	100.00%
Bootstrap support for Q4Q758 as seed ortholog is 100%.
Bootstrap support for D3B6F1 as seed ortholog is 98%.

Group of orthologs #272. Best score 353 bits
Score difference with first non-orthologous sequence - L.major:353 P.pallidum:353

Q4QDW8              	100.00%		D3B7P5              	100.00%
Bootstrap support for Q4QDW8 as seed ortholog is 100%.
Bootstrap support for D3B7P5 as seed ortholog is 100%.

Group of orthologs #273. Best score 353 bits
Score difference with first non-orthologous sequence - L.major:353 P.pallidum:353

Q4QIT9              	100.00%		D3BUF5              	100.00%
Bootstrap support for Q4QIT9 as seed ortholog is 100%.
Bootstrap support for D3BUF5 as seed ortholog is 100%.

Group of orthologs #274. Best score 352 bits
Score difference with first non-orthologous sequence - L.major:352 P.pallidum:352

Q4Q5J3              	100.00%		D3BEU0              	100.00%
Bootstrap support for Q4Q5J3 as seed ortholog is 100%.
Bootstrap support for D3BEU0 as seed ortholog is 100%.

Group of orthologs #275. Best score 352 bits
Score difference with first non-orthologous sequence - L.major:352 P.pallidum:352

Q4FYU7              	100.00%		D3BN56              	100.00%
Bootstrap support for Q4FYU7 as seed ortholog is 100%.
Bootstrap support for D3BN56 as seed ortholog is 100%.

Group of orthologs #276. Best score 351 bits
Score difference with first non-orthologous sequence - L.major:351 P.pallidum:351

E9AET6              	100.00%		D3BM68              	100.00%
E9AET7              	62.94%		
E9AET9              	56.77%		
E9AET8              	36.99%		
Bootstrap support for E9AET6 as seed ortholog is 100%.
Bootstrap support for D3BM68 as seed ortholog is 100%.

Group of orthologs #277. Best score 350 bits
Score difference with first non-orthologous sequence - L.major:350 P.pallidum:350

Q4Q5J5              	100.00%		D3BCX3              	100.00%
Bootstrap support for Q4Q5J5 as seed ortholog is 100%.
Bootstrap support for D3BCX3 as seed ortholog is 100%.

Group of orthologs #278. Best score 349 bits
Score difference with first non-orthologous sequence - L.major:349 P.pallidum:349

Q4QAA5              	100.00%		D3BJD9              	100.00%
Q4QFT4              	13.21%		D3BU44              	12.11%
Bootstrap support for Q4QAA5 as seed ortholog is 100%.
Bootstrap support for D3BJD9 as seed ortholog is 100%.

Group of orthologs #279. Best score 346 bits
Score difference with first non-orthologous sequence - L.major:112 P.pallidum:34

Q95Z93              	100.00%		D3BNB3              	100.00%
                    	       		D3BBA2              	25.03%
                    	       		D3AW28              	6.03%
Bootstrap support for Q95Z93 as seed ortholog is 97%.
Bootstrap support for D3BNB3 as seed ortholog is 71%.
Alternative seed ortholog is D3BKJ0 (34 bits away from this cluster)

Group of orthologs #280. Best score 344 bits
Score difference with first non-orthologous sequence - L.major:344 P.pallidum:344

Q4Q0B8              	100.00%		D3B3Z7              	100.00%
Bootstrap support for Q4Q0B8 as seed ortholog is 100%.
Bootstrap support for D3B3Z7 as seed ortholog is 100%.

Group of orthologs #281. Best score 343 bits
Score difference with first non-orthologous sequence - L.major:343 P.pallidum:343

Q4QHT0              	100.00%		D3BVL5              	100.00%
Bootstrap support for Q4QHT0 as seed ortholog is 100%.
Bootstrap support for D3BVL5 as seed ortholog is 100%.

Group of orthologs #282. Best score 342 bits
Score difference with first non-orthologous sequence - L.major:103 P.pallidum:342

E9AEC8              	100.00%		D3B7J9              	100.00%
Bootstrap support for E9AEC8 as seed ortholog is 91%.
Bootstrap support for D3B7J9 as seed ortholog is 100%.

Group of orthologs #283. Best score 340 bits
Score difference with first non-orthologous sequence - L.major:232 P.pallidum:340

Q4Q6Z4              	100.00%		D3BV45              	100.00%
Q4Q6Z5              	99.48%		
Bootstrap support for Q4Q6Z4 as seed ortholog is 100%.
Bootstrap support for D3BV45 as seed ortholog is 100%.

Group of orthologs #284. Best score 338 bits
Score difference with first non-orthologous sequence - L.major:338 P.pallidum:104

Q4Q601              	100.00%		D3BIF1              	100.00%
Bootstrap support for Q4Q601 as seed ortholog is 100%.
Bootstrap support for D3BIF1 as seed ortholog is 98%.

Group of orthologs #285. Best score 337 bits
Score difference with first non-orthologous sequence - L.major:337 P.pallidum:337

Q4FX34              	100.00%		D3AVJ4              	100.00%
Bootstrap support for Q4FX34 as seed ortholog is 100%.
Bootstrap support for D3AVJ4 as seed ortholog is 100%.

Group of orthologs #286. Best score 336 bits
Score difference with first non-orthologous sequence - L.major:336 P.pallidum:118

Q4Q4J6              	100.00%		D3AYZ6              	100.00%
Bootstrap support for Q4Q4J6 as seed ortholog is 100%.
Bootstrap support for D3AYZ6 as seed ortholog is 97%.

Group of orthologs #287. Best score 335 bits
Score difference with first non-orthologous sequence - L.major:335 P.pallidum:335

Q4Q2R0              	100.00%		D3BU07              	100.00%
Bootstrap support for Q4Q2R0 as seed ortholog is 100%.
Bootstrap support for D3BU07 as seed ortholog is 100%.

Group of orthologs #288. Best score 334 bits
Score difference with first non-orthologous sequence - L.major:334 P.pallidum:334

Q4QCG8              	100.00%		D3BAM6              	100.00%
Bootstrap support for Q4QCG8 as seed ortholog is 100%.
Bootstrap support for D3BAM6 as seed ortholog is 100%.

Group of orthologs #289. Best score 334 bits
Score difference with first non-orthologous sequence - L.major:31 P.pallidum:239

Q4Q1P5              	100.00%		D3BP61              	100.00%
Bootstrap support for Q4Q1P5 as seed ortholog is 66%.
Alternative seed ortholog is Q4QE76 (31 bits away from this cluster)
Bootstrap support for D3BP61 as seed ortholog is 100%.

Group of orthologs #290. Best score 332 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:332

Q4QA20              	100.00%		D3BEA1              	100.00%
Bootstrap support for Q4QA20 as seed ortholog is 99%.
Bootstrap support for D3BEA1 as seed ortholog is 100%.

Group of orthologs #291. Best score 332 bits
Score difference with first non-orthologous sequence - L.major:332 P.pallidum:332

Q4Q5X0              	100.00%		D3BRB4              	100.00%
Bootstrap support for Q4Q5X0 as seed ortholog is 100%.
Bootstrap support for D3BRB4 as seed ortholog is 100%.

Group of orthologs #292. Best score 331 bits
Score difference with first non-orthologous sequence - L.major:331 P.pallidum:331

Q4Q161              	100.00%		D3BP70              	100.00%
Bootstrap support for Q4Q161 as seed ortholog is 100%.
Bootstrap support for D3BP70 as seed ortholog is 100%.

Group of orthologs #293. Best score 330 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:127

E9AE21              	100.00%		D3BRA7              	100.00%
Q4Q7S3              	100.00%		
Bootstrap support for E9AE21 as seed ortholog is 90%.
Bootstrap support for Q4Q7S3 as seed ortholog is 91%.
Bootstrap support for D3BRA7 as seed ortholog is 98%.

Group of orthologs #294. Best score 330 bits
Score difference with first non-orthologous sequence - L.major:330 P.pallidum:177

E9AE39              	100.00%		D3B4Z6              	100.00%
Bootstrap support for E9AE39 as seed ortholog is 100%.
Bootstrap support for D3B4Z6 as seed ortholog is 100%.

Group of orthologs #295. Best score 330 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:67

O96526              	100.00%		D3B968              	100.00%
Bootstrap support for O96526 as seed ortholog is 99%.
Bootstrap support for D3B968 as seed ortholog is 98%.

Group of orthologs #296. Best score 330 bits
Score difference with first non-orthologous sequence - L.major:330 P.pallidum:330

E9AD32              	100.00%		D3BKC5              	100.00%
Bootstrap support for E9AD32 as seed ortholog is 100%.
Bootstrap support for D3BKC5 as seed ortholog is 100%.

Group of orthologs #297. Best score 329 bits
Score difference with first non-orthologous sequence - L.major:329 P.pallidum:82

Q4QA42              	100.00%		D3AW75              	100.00%
Bootstrap support for Q4QA42 as seed ortholog is 100%.
Bootstrap support for D3AW75 as seed ortholog is 97%.

Group of orthologs #298. Best score 328 bits
Score difference with first non-orthologous sequence - L.major:328 P.pallidum:328

Q4Q8E7              	100.00%		D3B2C8              	100.00%
                    	       		D3B2C9              	40.45%
                    	       		D3BM64              	31.10%
Bootstrap support for Q4Q8E7 as seed ortholog is 100%.
Bootstrap support for D3B2C8 as seed ortholog is 100%.

Group of orthologs #299. Best score 328 bits
Score difference with first non-orthologous sequence - L.major:52 P.pallidum:103

E9ADM4              	100.00%		D3BBC2              	100.00%
Bootstrap support for E9ADM4 as seed ortholog is 81%.
Bootstrap support for D3BBC2 as seed ortholog is 99%.

Group of orthologs #300. Best score 328 bits
Score difference with first non-orthologous sequence - L.major:328 P.pallidum:328

Q4Q8P6              	100.00%		D3B8W3              	100.00%
Bootstrap support for Q4Q8P6 as seed ortholog is 100%.
Bootstrap support for D3B8W3 as seed ortholog is 100%.

Group of orthologs #301. Best score 328 bits
Score difference with first non-orthologous sequence - L.major:328 P.pallidum:328

Q4QAU4              	100.00%		D3BTH8              	100.00%
Bootstrap support for Q4QAU4 as seed ortholog is 100%.
Bootstrap support for D3BTH8 as seed ortholog is 100%.

Group of orthologs #302. Best score 327 bits
Score difference with first non-orthologous sequence - L.major:327 P.pallidum:327

Q4FWX5              	100.00%		D3BFD7              	100.00%
Bootstrap support for Q4FWX5 as seed ortholog is 100%.
Bootstrap support for D3BFD7 as seed ortholog is 100%.

Group of orthologs #303. Best score 327 bits
Score difference with first non-orthologous sequence - L.major:178 P.pallidum:327

Q4QA83              	100.00%		D3BBY5              	100.00%
Bootstrap support for Q4QA83 as seed ortholog is 99%.
Bootstrap support for D3BBY5 as seed ortholog is 100%.

Group of orthologs #304. Best score 327 bits
Score difference with first non-orthologous sequence - L.major:327 P.pallidum:327

E9ADI3              	100.00%		D3BSA4              	100.00%
Bootstrap support for E9ADI3 as seed ortholog is 100%.
Bootstrap support for D3BSA4 as seed ortholog is 100%.

Group of orthologs #305. Best score 327 bits
Score difference with first non-orthologous sequence - L.major:327 P.pallidum:327

Q4QEU3              	100.00%		D3BL83              	100.00%
Bootstrap support for Q4QEU3 as seed ortholog is 100%.
Bootstrap support for D3BL83 as seed ortholog is 100%.

Group of orthologs #306. Best score 326 bits
Score difference with first non-orthologous sequence - L.major:50 P.pallidum:326

E9AFP3              	100.00%		D3B3Y9              	100.00%
Bootstrap support for E9AFP3 as seed ortholog is 86%.
Bootstrap support for D3B3Y9 as seed ortholog is 100%.

Group of orthologs #307. Best score 326 bits
Score difference with first non-orthologous sequence - L.major:46 P.pallidum:326

Q4QDL1              	100.00%		D3B7T8              	100.00%
Bootstrap support for Q4QDL1 as seed ortholog is 22%.
Alternative seed ortholog is Q4Q1B2 (46 bits away from this cluster)
Bootstrap support for D3B7T8 as seed ortholog is 100%.

Group of orthologs #308. Best score 324 bits
Score difference with first non-orthologous sequence - L.major:241 P.pallidum:324

Q4QDX5              	100.00%		D3AY02              	100.00%
Bootstrap support for Q4QDX5 as seed ortholog is 100%.
Bootstrap support for D3AY02 as seed ortholog is 100%.

Group of orthologs #309. Best score 321 bits
Score difference with first non-orthologous sequence - L.major:321 P.pallidum:321

Q4QD33              	100.00%		D3BGD9              	100.00%
Q4QD34              	100.00%		
Q4Q6V1              	5.61%		
Bootstrap support for Q4QD33 as seed ortholog is 100%.
Bootstrap support for Q4QD34 as seed ortholog is 100%.
Bootstrap support for D3BGD9 as seed ortholog is 100%.

Group of orthologs #310. Best score 318 bits
Score difference with first non-orthologous sequence - L.major:187 P.pallidum:318

Q4QC52              	100.00%		D3AZG6              	100.00%
Bootstrap support for Q4QC52 as seed ortholog is 100%.
Bootstrap support for D3AZG6 as seed ortholog is 100%.

Group of orthologs #311. Best score 318 bits
Score difference with first non-orthologous sequence - L.major:318 P.pallidum:318

E9ADM6              	100.00%		D3BFF5              	100.00%
Bootstrap support for E9ADM6 as seed ortholog is 100%.
Bootstrap support for D3BFF5 as seed ortholog is 100%.

Group of orthologs #312. Best score 318 bits
Score difference with first non-orthologous sequence - L.major:318 P.pallidum:318

Q9NGR0              	100.00%		D3B6S4              	100.00%
Bootstrap support for Q9NGR0 as seed ortholog is 100%.
Bootstrap support for D3B6S4 as seed ortholog is 100%.

Group of orthologs #313. Best score 318 bits
Score difference with first non-orthologous sequence - L.major:318 P.pallidum:228

Q4QEC3              	100.00%		D3BM83              	100.00%
Bootstrap support for Q4QEC3 as seed ortholog is 100%.
Bootstrap support for D3BM83 as seed ortholog is 100%.

Group of orthologs #314. Best score 316 bits
Score difference with first non-orthologous sequence - L.major:316 P.pallidum:316

Q4QE48              	100.00%		D3BEA4              	100.00%
Bootstrap support for Q4QE48 as seed ortholog is 100%.
Bootstrap support for D3BEA4 as seed ortholog is 100%.

Group of orthologs #315. Best score 315 bits
Score difference with first non-orthologous sequence - L.major:315 P.pallidum:315

Q4QDL5              	100.00%		D3B6G8              	100.00%
Q4Q5P0              	92.38%		
Bootstrap support for Q4QDL5 as seed ortholog is 100%.
Bootstrap support for D3B6G8 as seed ortholog is 100%.

Group of orthologs #316. Best score 315 bits
Score difference with first non-orthologous sequence - L.major:315 P.pallidum:315

Q4QIU4              	100.00%		D3B298              	100.00%
Bootstrap support for Q4QIU4 as seed ortholog is 100%.
Bootstrap support for D3B298 as seed ortholog is 100%.

Group of orthologs #317. Best score 314 bits
Score difference with first non-orthologous sequence - L.major:314 P.pallidum:119

Q4Q1M8              	100.00%		D3BBF7              	100.00%
Bootstrap support for Q4Q1M8 as seed ortholog is 100%.
Bootstrap support for D3BBF7 as seed ortholog is 99%.

Group of orthologs #318. Best score 311 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:24

E9ACW0              	100.00%		D3BUD0              	100.00%
Q4QCG6              	7.24%		
Bootstrap support for E9ACW0 as seed ortholog is 99%.
Bootstrap support for D3BUD0 as seed ortholog is 64%.
Alternative seed ortholog is D3BAN3 (24 bits away from this cluster)

Group of orthologs #319. Best score 310 bits
Score difference with first non-orthologous sequence - L.major:22 P.pallidum:105

E9AFX7              	100.00%		D3AVQ3              	100.00%
Bootstrap support for E9AFX7 as seed ortholog is 47%.
Alternative seed ortholog is Q4QA88 (22 bits away from this cluster)
Bootstrap support for D3AVQ3 as seed ortholog is 98%.

Group of orthologs #320. Best score 309 bits
Score difference with first non-orthologous sequence - L.major:309 P.pallidum:309

Q4Q135              	100.00%		D3B0J0              	100.00%
Q4Q134              	92.58%		
Bootstrap support for Q4Q135 as seed ortholog is 100%.
Bootstrap support for D3B0J0 as seed ortholog is 100%.

Group of orthologs #321. Best score 308 bits
Score difference with first non-orthologous sequence - L.major:308 P.pallidum:261

Q4Q1I2              	100.00%		D3B7Y5              	100.00%
Q4Q1I3              	99.05%		
Bootstrap support for Q4Q1I2 as seed ortholog is 100%.
Bootstrap support for D3B7Y5 as seed ortholog is 100%.

Group of orthologs #322. Best score 308 bits
Score difference with first non-orthologous sequence - L.major:308 P.pallidum:308

Q4Q1V0              	100.00%		D3BKL2              	100.00%
Bootstrap support for Q4Q1V0 as seed ortholog is 100%.
Bootstrap support for D3BKL2 as seed ortholog is 100%.

Group of orthologs #323. Best score 307 bits
Score difference with first non-orthologous sequence - L.major:307 P.pallidum:129

Q4Q1F5              	100.00%		D3BR06              	100.00%
Bootstrap support for Q4Q1F5 as seed ortholog is 100%.
Bootstrap support for D3BR06 as seed ortholog is 99%.

Group of orthologs #324. Best score 306 bits
Score difference with first non-orthologous sequence - L.major:306 P.pallidum:306

Q4Q6A1              	100.00%		D3B2J9              	100.00%
Bootstrap support for Q4Q6A1 as seed ortholog is 100%.
Bootstrap support for D3B2J9 as seed ortholog is 100%.

Group of orthologs #325. Best score 305 bits
Score difference with first non-orthologous sequence - L.major:305 P.pallidum:305

Q4Q7G8              	100.00%		D3BDY0              	100.00%
Bootstrap support for Q4Q7G8 as seed ortholog is 100%.
Bootstrap support for D3BDY0 as seed ortholog is 100%.

Group of orthologs #326. Best score 305 bits
Score difference with first non-orthologous sequence - L.major:233 P.pallidum:198

Q4Q7Y7              	100.00%		D3BE97              	100.00%
Bootstrap support for Q4Q7Y7 as seed ortholog is 100%.
Bootstrap support for D3BE97 as seed ortholog is 100%.

Group of orthologs #327. Best score 304 bits
Score difference with first non-orthologous sequence - L.major:304 P.pallidum:304

E9AE26              	100.00%		D3B7P8              	100.00%
Bootstrap support for E9AE26 as seed ortholog is 100%.
Bootstrap support for D3B7P8 as seed ortholog is 100%.

Group of orthologs #328. Best score 304 bits
Score difference with first non-orthologous sequence - L.major:304 P.pallidum:228

E9AFL2              	100.00%		D3BBG6              	100.00%
Bootstrap support for E9AFL2 as seed ortholog is 100%.
Bootstrap support for D3BBG6 as seed ortholog is 100%.

Group of orthologs #329. Best score 303 bits
Score difference with first non-orthologous sequence - L.major:303 P.pallidum:303

Q4QIP6              	100.00%		D3AYN6              	100.00%
Bootstrap support for Q4QIP6 as seed ortholog is 100%.
Bootstrap support for D3AYN6 as seed ortholog is 100%.

Group of orthologs #330. Best score 303 bits
Score difference with first non-orthologous sequence - L.major:303 P.pallidum:303

Q4QIY2              	100.00%		D3BT14              	100.00%
Bootstrap support for Q4QIY2 as seed ortholog is 100%.
Bootstrap support for D3BT14 as seed ortholog is 100%.

Group of orthologs #331. Best score 302 bits
Score difference with first non-orthologous sequence - L.major:12 P.pallidum:112

Q4QDK3              	100.00%		D3BCP7              	100.00%
Bootstrap support for Q4QDK3 as seed ortholog is 60%.
Alternative seed ortholog is E9ACY7 (12 bits away from this cluster)
Bootstrap support for D3BCP7 as seed ortholog is 99%.

Group of orthologs #332. Best score 302 bits
Score difference with first non-orthologous sequence - L.major:213 P.pallidum:174

Q4QJI3              	100.00%		D3BVN2              	100.00%
Bootstrap support for Q4QJI3 as seed ortholog is 100%.
Bootstrap support for D3BVN2 as seed ortholog is 100%.

Group of orthologs #333. Best score 300 bits
Score difference with first non-orthologous sequence - L.major:254 P.pallidum:300

Q4Q7X6              	100.00%		D3BQC7              	100.00%
                    	       		D3B7L8              	8.65%
Bootstrap support for Q4Q7X6 as seed ortholog is 100%.
Bootstrap support for D3BQC7 as seed ortholog is 100%.

Group of orthologs #334. Best score 300 bits
Score difference with first non-orthologous sequence - L.major:42 P.pallidum:47

E9AFE7              	100.00%		D3BFM3              	100.00%
Bootstrap support for E9AFE7 as seed ortholog is 86%.
Bootstrap support for D3BFM3 as seed ortholog is 89%.

Group of orthologs #335. Best score 300 bits
Score difference with first non-orthologous sequence - L.major:300 P.pallidum:300

Q4Q3F9              	100.00%		D3BQ86              	100.00%
Bootstrap support for Q4Q3F9 as seed ortholog is 100%.
Bootstrap support for D3BQ86 as seed ortholog is 100%.

Group of orthologs #336. Best score 299 bits
Score difference with first non-orthologous sequence - L.major:299 P.pallidum:299

E9AFV2              	100.00%		D3B668              	100.00%
Bootstrap support for E9AFV2 as seed ortholog is 100%.
Bootstrap support for D3B668 as seed ortholog is 100%.

Group of orthologs #337. Best score 299 bits
Score difference with first non-orthologous sequence - L.major:299 P.pallidum:299

Q4Q4U6              	100.00%		D3B8T4              	100.00%
Bootstrap support for Q4Q4U6 as seed ortholog is 100%.
Bootstrap support for D3B8T4 as seed ortholog is 100%.

Group of orthologs #338. Best score 299 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:299

Q4Q2T0              	100.00%		D3BD56              	100.00%
Bootstrap support for Q4Q2T0 as seed ortholog is 99%.
Bootstrap support for D3BD56 as seed ortholog is 100%.

Group of orthologs #339. Best score 299 bits
Score difference with first non-orthologous sequence - L.major:299 P.pallidum:299

Q4Q1Y7              	100.00%		D3BKY4              	100.00%
Bootstrap support for Q4Q1Y7 as seed ortholog is 100%.
Bootstrap support for D3BKY4 as seed ortholog is 100%.

Group of orthologs #340. Best score 299 bits
Score difference with first non-orthologous sequence - L.major:299 P.pallidum:299

Q4QE40              	100.00%		D3BVM9              	100.00%
Bootstrap support for Q4QE40 as seed ortholog is 100%.
Bootstrap support for D3BVM9 as seed ortholog is 100%.

Group of orthologs #341. Best score 298 bits
Score difference with first non-orthologous sequence - L.major:156 P.pallidum:98

Q4QGG2              	100.00%		D3B626              	100.00%
Bootstrap support for Q4QGG2 as seed ortholog is 99%.
Bootstrap support for D3B626 as seed ortholog is 99%.

Group of orthologs #342. Best score 298 bits
Score difference with first non-orthologous sequence - L.major:32 P.pallidum:132

Q9BHG2              	100.00%		D3BCI5              	100.00%
Bootstrap support for Q9BHG2 as seed ortholog is 77%.
Bootstrap support for D3BCI5 as seed ortholog is 99%.

Group of orthologs #343. Best score 297 bits
Score difference with first non-orthologous sequence - L.major:126 P.pallidum:297

Q4Q6Z7              	100.00%		D3BQ91              	100.00%
E9AEI1              	6.53%		
Bootstrap support for Q4Q6Z7 as seed ortholog is 98%.
Bootstrap support for D3BQ91 as seed ortholog is 100%.

Group of orthologs #344. Best score 296 bits
Score difference with first non-orthologous sequence - L.major:27 P.pallidum:71

Q4QBD6              	100.00%		D3BDA2              	100.00%
Bootstrap support for Q4QBD6 as seed ortholog is 47%.
Alternative seed ortholog is Q4Q1D0 (27 bits away from this cluster)
Bootstrap support for D3BDA2 as seed ortholog is 82%.

Group of orthologs #345. Best score 295 bits
Score difference with first non-orthologous sequence - L.major:295 P.pallidum:295

Q4Q3K4              	100.00%		D3B6K6              	100.00%
Bootstrap support for Q4Q3K4 as seed ortholog is 100%.
Bootstrap support for D3B6K6 as seed ortholog is 100%.

Group of orthologs #346. Best score 295 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:119

Q4QFH1              	100.00%		D3B6C6              	100.00%
Bootstrap support for Q4QFH1 as seed ortholog is 99%.
Bootstrap support for D3B6C6 as seed ortholog is 99%.

Group of orthologs #347. Best score 294 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:294

E9AFK8              	100.00%		D3B0N9              	100.00%
Bootstrap support for E9AFK8 as seed ortholog is 100%.
Bootstrap support for D3B0N9 as seed ortholog is 100%.

Group of orthologs #348. Best score 294 bits
Score difference with first non-orthologous sequence - L.major:294 P.pallidum:294

E9AFE9              	100.00%		D3B3A5              	100.00%
Bootstrap support for E9AFE9 as seed ortholog is 100%.
Bootstrap support for D3B3A5 as seed ortholog is 100%.

Group of orthologs #349. Best score 294 bits
Score difference with first non-orthologous sequence - L.major:294 P.pallidum:99

Q4QAC9              	100.00%		D3BPC8              	100.00%
Bootstrap support for Q4QAC9 as seed ortholog is 100%.
Bootstrap support for D3BPC8 as seed ortholog is 97%.

Group of orthologs #350. Best score 292 bits
Score difference with first non-orthologous sequence - L.major:292 P.pallidum:292

Q4Q4N0              	100.00%		D3BSJ1              	100.00%
Bootstrap support for Q4Q4N0 as seed ortholog is 100%.
Bootstrap support for D3BSJ1 as seed ortholog is 100%.

Group of orthologs #351. Best score 290 bits
Score difference with first non-orthologous sequence - L.major:290 P.pallidum:207

Q4QGR5              	100.00%		D3B1Q6              	100.00%
Bootstrap support for Q4QGR5 as seed ortholog is 100%.
Bootstrap support for D3B1Q6 as seed ortholog is 100%.

Group of orthologs #352. Best score 290 bits
Score difference with first non-orthologous sequence - L.major:290 P.pallidum:97

Q4QF38              	100.00%		D3B4I1              	100.00%
Bootstrap support for Q4QF38 as seed ortholog is 100%.
Bootstrap support for D3B4I1 as seed ortholog is 98%.

Group of orthologs #353. Best score 290 bits
Score difference with first non-orthologous sequence - L.major:290 P.pallidum:290

Q4Q7U7              	100.00%		D3BI40              	100.00%
Bootstrap support for Q4Q7U7 as seed ortholog is 100%.
Bootstrap support for D3BI40 as seed ortholog is 100%.

Group of orthologs #354. Best score 289 bits
Score difference with first non-orthologous sequence - L.major:289 P.pallidum:289

Q4Q2J2              	100.00%		D3B6L3              	100.00%
Bootstrap support for Q4Q2J2 as seed ortholog is 100%.
Bootstrap support for D3B6L3 as seed ortholog is 100%.

Group of orthologs #355. Best score 289 bits
Score difference with first non-orthologous sequence - L.major:145 P.pallidum:289

Q4QCX5              	100.00%		D3B1H9              	100.00%
Bootstrap support for Q4QCX5 as seed ortholog is 99%.
Bootstrap support for D3B1H9 as seed ortholog is 100%.

Group of orthologs #356. Best score 289 bits
Score difference with first non-orthologous sequence - L.major:7 P.pallidum:120

Q4QHG6              	100.00%		D3BBN0              	100.00%
Bootstrap support for Q4QHG6 as seed ortholog is 54%.
Alternative seed ortholog is Q4Q449 (7 bits away from this cluster)
Bootstrap support for D3BBN0 as seed ortholog is 99%.

Group of orthologs #357. Best score 287 bits
Score difference with first non-orthologous sequence - L.major:287 P.pallidum:287

Q4Q5H3              	100.00%		D3AWY9              	100.00%
Bootstrap support for Q4Q5H3 as seed ortholog is 100%.
Bootstrap support for D3AWY9 as seed ortholog is 100%.

Group of orthologs #358. Best score 287 bits
Score difference with first non-orthologous sequence - L.major:287 P.pallidum:287

Q4Q3E2              	100.00%		D3B2H8              	100.00%
Bootstrap support for Q4Q3E2 as seed ortholog is 100%.
Bootstrap support for D3B2H8 as seed ortholog is 100%.

Group of orthologs #359. Best score 286 bits
Score difference with first non-orthologous sequence - L.major:26 P.pallidum:59

Q4Q5L5              	100.00%		D3B313              	100.00%
Q4QEB1              	7.22%		D3BDQ8              	5.11%
Bootstrap support for Q4Q5L5 as seed ortholog is 60%.
Alternative seed ortholog is Q4Q9P2 (26 bits away from this cluster)
Bootstrap support for D3B313 as seed ortholog is 72%.
Alternative seed ortholog is D3BAU8 (59 bits away from this cluster)

Group of orthologs #360. Best score 286 bits
Score difference with first non-orthologous sequence - L.major:286 P.pallidum:286

Q4QH76              	100.00%		D3B0C5              	100.00%
Bootstrap support for Q4QH76 as seed ortholog is 100%.
Bootstrap support for D3B0C5 as seed ortholog is 100%.

Group of orthologs #361. Best score 286 bits
Score difference with first non-orthologous sequence - L.major:286 P.pallidum:286

Q4QGB0              	100.00%		D3BCN8              	100.00%
Bootstrap support for Q4QGB0 as seed ortholog is 100%.
Bootstrap support for D3BCN8 as seed ortholog is 100%.

Group of orthologs #362. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:172 P.pallidum:285

Q4Q3Z6              	100.00%		D3B5L4              	100.00%
Bootstrap support for Q4Q3Z6 as seed ortholog is 99%.
Bootstrap support for D3B5L4 as seed ortholog is 100%.

Group of orthologs #363. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:285 P.pallidum:285

Q4Q2N6              	100.00%		D3BBG3              	100.00%
Bootstrap support for Q4Q2N6 as seed ortholog is 100%.
Bootstrap support for D3BBG3 as seed ortholog is 100%.

Group of orthologs #364. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:285 P.pallidum:285

Q4Q6T3              	100.00%		D3BGE3              	100.00%
Bootstrap support for Q4Q6T3 as seed ortholog is 100%.
Bootstrap support for D3BGE3 as seed ortholog is 100%.

Group of orthologs #365. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:25 P.pallidum:5

Q4QFP9              	100.00%		D3BV13              	100.00%
Bootstrap support for Q4QFP9 as seed ortholog is 65%.
Alternative seed ortholog is E9AC13 (25 bits away from this cluster)
Bootstrap support for D3BV13 as seed ortholog is 72%.
Alternative seed ortholog is D3AY78 (5 bits away from this cluster)

Group of orthologs #366. Best score 284 bits
Score difference with first non-orthologous sequence - L.major:178 P.pallidum:188

E9AC40              	100.00%		D3B2D6              	100.00%
E9AC43              	38.81%		D3AZ71              	16.11%
E9AC38              	31.87%		
E9ACH0              	29.85%		
E9AC41              	28.27%		
Bootstrap support for E9AC40 as seed ortholog is 99%.
Bootstrap support for D3B2D6 as seed ortholog is 99%.

Group of orthologs #367. Best score 284 bits
Score difference with first non-orthologous sequence - L.major:284 P.pallidum:163

E9AF09              	100.00%		D3BER0              	100.00%
E9AF10              	100.00%		
Bootstrap support for E9AF09 as seed ortholog is 100%.
Bootstrap support for E9AF10 as seed ortholog is 100%.
Bootstrap support for D3BER0 as seed ortholog is 100%.

Group of orthologs #368. Best score 284 bits
Score difference with first non-orthologous sequence - L.major:284 P.pallidum:27

E9ADM7              	100.00%		D3B457              	100.00%
Bootstrap support for E9ADM7 as seed ortholog is 100%.
Bootstrap support for D3B457 as seed ortholog is 76%.

Group of orthologs #369. Best score 284 bits
Score difference with first non-orthologous sequence - L.major:284 P.pallidum:284

Q4Q8F2              	100.00%		D3BP76              	100.00%
Bootstrap support for Q4Q8F2 as seed ortholog is 100%.
Bootstrap support for D3BP76 as seed ortholog is 100%.

Group of orthologs #370. Best score 283 bits
Score difference with first non-orthologous sequence - L.major:283 P.pallidum:283

E9ADN0              	100.00%		D3BR29              	100.00%
E9ADI2              	44.49%		
Bootstrap support for E9ADN0 as seed ortholog is 100%.
Bootstrap support for D3BR29 as seed ortholog is 100%.

Group of orthologs #371. Best score 283 bits
Score difference with first non-orthologous sequence - L.major:283 P.pallidum:190

Q4QA52              	100.00%		D3BGA4              	100.00%
Bootstrap support for Q4QA52 as seed ortholog is 100%.
Bootstrap support for D3BGA4 as seed ortholog is 99%.

Group of orthologs #372. Best score 283 bits
Score difference with first non-orthologous sequence - L.major:283 P.pallidum:160

Q4Q8Q5              	100.00%		D3BL98              	100.00%
Bootstrap support for Q4Q8Q5 as seed ortholog is 100%.
Bootstrap support for D3BL98 as seed ortholog is 99%.

Group of orthologs #373. Best score 282 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:34

Q4Q9E8              	100.00%		D3B280              	100.00%
Bootstrap support for Q4Q9E8 as seed ortholog is 90%.
Bootstrap support for D3B280 as seed ortholog is 83%.

Group of orthologs #374. Best score 282 bits
Score difference with first non-orthologous sequence - L.major:282 P.pallidum:176

E9AEY8              	100.00%		D3BFF8              	100.00%
Bootstrap support for E9AEY8 as seed ortholog is 100%.
Bootstrap support for D3BFF8 as seed ortholog is 99%.

Group of orthologs #375. Best score 280 bits
Score difference with first non-orthologous sequence - L.major:191 P.pallidum:280

Q4Q1Q9              	100.00%		D3B6G7              	100.00%
Bootstrap support for Q4Q1Q9 as seed ortholog is 100%.
Bootstrap support for D3B6G7 as seed ortholog is 100%.

Group of orthologs #376. Best score 280 bits
Score difference with first non-orthologous sequence - L.major:280 P.pallidum:186

E9AEZ2              	100.00%		D3BA80              	100.00%
Bootstrap support for E9AEZ2 as seed ortholog is 100%.
Bootstrap support for D3BA80 as seed ortholog is 100%.

Group of orthologs #377. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:279 P.pallidum:279

Q4Q8W8              	100.00%		D3BEF3              	100.00%
Bootstrap support for Q4Q8W8 as seed ortholog is 100%.
Bootstrap support for D3BEF3 as seed ortholog is 100%.

Group of orthologs #378. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:279 P.pallidum:238

Q4QC00              	100.00%		D3BBN6              	100.00%
Bootstrap support for Q4QC00 as seed ortholog is 100%.
Bootstrap support for D3BBN6 as seed ortholog is 100%.

Group of orthologs #379. Best score 278 bits
Score difference with first non-orthologous sequence - L.major:278 P.pallidum:278

E9ACH4              	100.00%		D3B0C6              	100.00%
                    	       		D3BV03              	9.62%
                    	       		D3BG45              	6.41%
Bootstrap support for E9ACH4 as seed ortholog is 100%.
Bootstrap support for D3B0C6 as seed ortholog is 100%.

Group of orthologs #380. Best score 278 bits
Score difference with first non-orthologous sequence - L.major:278 P.pallidum:278

Q4QAI9              	100.00%		D3B4I5              	100.00%
Bootstrap support for Q4QAI9 as seed ortholog is 100%.
Bootstrap support for D3B4I5 as seed ortholog is 100%.

Group of orthologs #381. Best score 278 bits
Score difference with first non-orthologous sequence - L.major:278 P.pallidum:278

Q4Q0N6              	100.00%		D3BUD5              	100.00%
Bootstrap support for Q4Q0N6 as seed ortholog is 100%.
Bootstrap support for D3BUD5 as seed ortholog is 100%.

Group of orthologs #382. Best score 277 bits
Score difference with first non-orthologous sequence - L.major:35 P.pallidum:277

Q4Q1K4              	100.00%		D3AVU8              	100.00%
Bootstrap support for Q4Q1K4 as seed ortholog is 74%.
Alternative seed ortholog is E9AEB6 (35 bits away from this cluster)
Bootstrap support for D3AVU8 as seed ortholog is 100%.

Group of orthologs #383. Best score 277 bits
Score difference with first non-orthologous sequence - L.major:277 P.pallidum:277

Q4Q957              	100.00%		D3AYJ1              	100.00%
Bootstrap support for Q4Q957 as seed ortholog is 100%.
Bootstrap support for D3AYJ1 as seed ortholog is 100%.

Group of orthologs #384. Best score 276 bits
Score difference with first non-orthologous sequence - L.major:118 P.pallidum:30

E9AD53              	100.00%		D3BLV3              	100.00%
                    	       		D3BN54              	100.00%
                    	       		D3BP55              	10.87%
Bootstrap support for E9AD53 as seed ortholog is 100%.
Bootstrap support for D3BLV3 as seed ortholog is 89%.
Bootstrap support for D3BN54 as seed ortholog is 93%.

Group of orthologs #385. Best score 276 bits
Score difference with first non-orthologous sequence - L.major:276 P.pallidum:276

Q4QIE7              	100.00%		D3B2S4              	100.00%
Bootstrap support for Q4QIE7 as seed ortholog is 100%.
Bootstrap support for D3B2S4 as seed ortholog is 100%.

Group of orthologs #386. Best score 275 bits
Score difference with first non-orthologous sequence - L.major:275 P.pallidum:275

E9AFW6              	100.00%		D3B491              	100.00%
Bootstrap support for E9AFW6 as seed ortholog is 100%.
Bootstrap support for D3B491 as seed ortholog is 100%.

Group of orthologs #387. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:274 P.pallidum:274

Q4Q732              	100.00%		D3B3W9              	100.00%
Bootstrap support for Q4Q732 as seed ortholog is 100%.
Bootstrap support for D3B3W9 as seed ortholog is 100%.

Group of orthologs #388. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:41 P.pallidum:224

Q4QCE7              	100.00%		D3AZM1              	100.00%
Bootstrap support for Q4QCE7 as seed ortholog is 85%.
Bootstrap support for D3AZM1 as seed ortholog is 100%.

Group of orthologs #389. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:274 P.pallidum:274

Q4QGX0              	100.00%		D3BF70              	100.00%
Bootstrap support for Q4QGX0 as seed ortholog is 100%.
Bootstrap support for D3BF70 as seed ortholog is 100%.

Group of orthologs #390. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:274 P.pallidum:274

Q4QHS9              	100.00%		D3BK65              	100.00%
Bootstrap support for Q4QHS9 as seed ortholog is 100%.
Bootstrap support for D3BK65 as seed ortholog is 100%.

Group of orthologs #391. Best score 273 bits
Score difference with first non-orthologous sequence - L.major:273 P.pallidum:174

E9ACB2              	100.00%		D3BQJ7              	100.00%
Bootstrap support for E9ACB2 as seed ortholog is 100%.
Bootstrap support for D3BQJ7 as seed ortholog is 100%.

Group of orthologs #392. Best score 273 bits
Score difference with first non-orthologous sequence - L.major:21 P.pallidum:273

Q4Q1J8              	100.00%		D3BQC3              	100.00%
Bootstrap support for Q4Q1J8 as seed ortholog is 69%.
Alternative seed ortholog is Q4Q232 (21 bits away from this cluster)
Bootstrap support for D3BQC3 as seed ortholog is 100%.

Group of orthologs #393. Best score 273 bits
Score difference with first non-orthologous sequence - L.major:273 P.pallidum:273

Q4QFS8              	100.00%		D3BE83              	100.00%
Bootstrap support for Q4QFS8 as seed ortholog is 100%.
Bootstrap support for D3BE83 as seed ortholog is 100%.

Group of orthologs #394. Best score 272 bits
Score difference with first non-orthologous sequence - L.major:272 P.pallidum:205

Q4Q1I5              	100.00%		D3B9D9              	100.00%
Bootstrap support for Q4Q1I5 as seed ortholog is 100%.
Bootstrap support for D3B9D9 as seed ortholog is 100%.

Group of orthologs #395. Best score 272 bits
Score difference with first non-orthologous sequence - L.major:272 P.pallidum:272

Q4Q084              	100.00%		D3BK44              	100.00%
Bootstrap support for Q4Q084 as seed ortholog is 100%.
Bootstrap support for D3BK44 as seed ortholog is 100%.

Group of orthologs #396. Best score 271 bits
Score difference with first non-orthologous sequence - L.major:176 P.pallidum:164

Q4Q9V1              	100.00%		D3BSF4              	100.00%
                    	       		D3B7P1              	12.43%
Bootstrap support for Q4Q9V1 as seed ortholog is 100%.
Bootstrap support for D3BSF4 as seed ortholog is 100%.

Group of orthologs #397. Best score 271 bits
Score difference with first non-orthologous sequence - L.major:271 P.pallidum:213

E9AE92              	100.00%		D3B6R2              	100.00%
Bootstrap support for E9AE92 as seed ortholog is 100%.
Bootstrap support for D3B6R2 as seed ortholog is 99%.

Group of orthologs #398. Best score 270 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:53

Q4Q5Y0              	100.00%		D3B3T9              	100.00%
Q6IMM3              	14.89%		
Bootstrap support for Q4Q5Y0 as seed ortholog is 99%.
Bootstrap support for D3B3T9 as seed ortholog is 99%.

Group of orthologs #399. Best score 269 bits
Score difference with first non-orthologous sequence - L.major:269 P.pallidum:203

Q4Q455              	100.00%		D3AWX8              	100.00%
Bootstrap support for Q4Q455 as seed ortholog is 100%.
Bootstrap support for D3AWX8 as seed ortholog is 99%.

Group of orthologs #400. Best score 269 bits
Score difference with first non-orthologous sequence - L.major:269 P.pallidum:269

Q4QDE0              	100.00%		D3B8H0              	100.00%
Bootstrap support for Q4QDE0 as seed ortholog is 100%.
Bootstrap support for D3B8H0 as seed ortholog is 100%.

Group of orthologs #401. Best score 269 bits
Score difference with first non-orthologous sequence - L.major:269 P.pallidum:269

Q4Q0M0              	100.00%		D3BT59              	100.00%
Bootstrap support for Q4Q0M0 as seed ortholog is 100%.
Bootstrap support for D3BT59 as seed ortholog is 100%.

Group of orthologs #402. Best score 268 bits
Score difference with first non-orthologous sequence - L.major:209 P.pallidum:167

Q4Q0T1              	100.00%		D3AVR8              	100.00%
Bootstrap support for Q4Q0T1 as seed ortholog is 100%.
Bootstrap support for D3AVR8 as seed ortholog is 99%.

Group of orthologs #403. Best score 266 bits
Score difference with first non-orthologous sequence - L.major:266 P.pallidum:266

O97193              	100.00%		D3AXN0              	100.00%
Bootstrap support for O97193 as seed ortholog is 100%.
Bootstrap support for D3AXN0 as seed ortholog is 100%.

Group of orthologs #404. Best score 266 bits
Score difference with first non-orthologous sequence - L.major:266 P.pallidum:266

Q4QFU3              	100.00%		D3B3U0              	100.00%
Bootstrap support for Q4QFU3 as seed ortholog is 100%.
Bootstrap support for D3B3U0 as seed ortholog is 100%.

Group of orthologs #405. Best score 265 bits
Score difference with first non-orthologous sequence - L.major:265 P.pallidum:265

Q4Q0M3              	100.00%		D3BIU0              	100.00%
                    	       		D3BKA7              	6.33%
Bootstrap support for Q4Q0M3 as seed ortholog is 100%.
Bootstrap support for D3BIU0 as seed ortholog is 100%.

Group of orthologs #406. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:264 P.pallidum:264

Q4QEZ6              	100.00%		D3BSF9              	100.00%
Q4QB17              	10.27%		
Bootstrap support for Q4QEZ6 as seed ortholog is 100%.
Bootstrap support for D3BSF9 as seed ortholog is 100%.

Group of orthologs #407. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:264 P.pallidum:264

E9ADE6              	100.00%		D3BLV1              	100.00%
Bootstrap support for E9ADE6 as seed ortholog is 100%.
Bootstrap support for D3BLV1 as seed ortholog is 100%.

Group of orthologs #408. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:264 P.pallidum:264

Q4Q3R4              	100.00%		D3BKN6              	100.00%
Bootstrap support for Q4Q3R4 as seed ortholog is 100%.
Bootstrap support for D3BKN6 as seed ortholog is 100%.

Group of orthologs #409. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:264 P.pallidum:264

Q4Q0W1              	100.00%		D3BRX2              	100.00%
Bootstrap support for Q4Q0W1 as seed ortholog is 100%.
Bootstrap support for D3BRX2 as seed ortholog is 100%.

Group of orthologs #410. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:142 P.pallidum:95

Q4QF44              	100.00%		D3BDI4              	100.00%
Bootstrap support for Q4QF44 as seed ortholog is 99%.
Bootstrap support for D3BDI4 as seed ortholog is 98%.

Group of orthologs #411. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:263

Q4Q228              	100.00%		D3AYV5              	100.00%
Bootstrap support for Q4Q228 as seed ortholog is 95%.
Bootstrap support for D3AYV5 as seed ortholog is 100%.

Group of orthologs #412. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:98 P.pallidum:91

Q4Q369              	100.00%		D3B9P6              	100.00%
Bootstrap support for Q4Q369 as seed ortholog is 99%.
Bootstrap support for D3B9P6 as seed ortholog is 98%.

Group of orthologs #413. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:263 P.pallidum:263

Q4Q2T3              	100.00%		D3BKM5              	100.00%
Bootstrap support for Q4Q2T3 as seed ortholog is 100%.
Bootstrap support for D3BKM5 as seed ortholog is 100%.

Group of orthologs #414. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:132 P.pallidum:99

Q4QHT2              	100.00%		D3BBP5              	100.00%
Bootstrap support for Q4QHT2 as seed ortholog is 100%.
Bootstrap support for D3BBP5 as seed ortholog is 100%.

Group of orthologs #415. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:263 P.pallidum:263

Q4Q6Y9              	100.00%		D3BQ29              	100.00%
Bootstrap support for Q4Q6Y9 as seed ortholog is 100%.
Bootstrap support for D3BQ29 as seed ortholog is 100%.

Group of orthologs #416. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:263 P.pallidum:263

Q66NE0              	100.00%		D3BFU2              	100.00%
Bootstrap support for Q66NE0 as seed ortholog is 100%.
Bootstrap support for D3BFU2 as seed ortholog is 100%.

Group of orthologs #417. Best score 262 bits
Score difference with first non-orthologous sequence - L.major:262 P.pallidum:262

Q4QDJ3              	100.00%		D3BF55              	100.00%
Q4Q2X3              	16.38%		
Bootstrap support for Q4QDJ3 as seed ortholog is 100%.
Bootstrap support for D3BF55 as seed ortholog is 100%.

Group of orthologs #418. Best score 262 bits
Score difference with first non-orthologous sequence - L.major:262 P.pallidum:262

E9ADK4              	100.00%		D3AWW1              	100.00%
Bootstrap support for E9ADK4 as seed ortholog is 100%.
Bootstrap support for D3AWW1 as seed ortholog is 100%.

Group of orthologs #419. Best score 262 bits
Score difference with first non-orthologous sequence - L.major:262 P.pallidum:123

Q4QIQ3              	100.00%		D3B9J8              	100.00%
Bootstrap support for Q4QIQ3 as seed ortholog is 100%.
Bootstrap support for D3B9J8 as seed ortholog is 99%.

Group of orthologs #420. Best score 261 bits
Score difference with first non-orthologous sequence - L.major:56 P.pallidum:106

Q9N2N1              	100.00%		D3B839              	100.00%
Bootstrap support for Q9N2N1 as seed ortholog is 95%.
Bootstrap support for D3B839 as seed ortholog is 99%.

Group of orthologs #421. Best score 260 bits
Score difference with first non-orthologous sequence - L.major:35 P.pallidum:121

E9AD70              	100.00%		D3BJP0              	100.00%
Bootstrap support for E9AD70 as seed ortholog is 82%.
Bootstrap support for D3BJP0 as seed ortholog is 99%.

Group of orthologs #422. Best score 260 bits
Score difference with first non-orthologous sequence - L.major:260 P.pallidum:260

Q4QC13              	100.00%		D3B770              	100.00%
Bootstrap support for Q4QC13 as seed ortholog is 100%.
Bootstrap support for D3B770 as seed ortholog is 100%.

Group of orthologs #423. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:7

Q4QF95              	100.00%		D3B158              	100.00%
Q4QJ70              	8.19%		
Q4QJ71              	7.55%		
Bootstrap support for Q4QF95 as seed ortholog is 55%.
Alternative seed ortholog is Q4Q1D0 (9 bits away from this cluster)
Bootstrap support for D3B158 as seed ortholog is 55%.
Alternative seed ortholog is D3B1K0 (7 bits away from this cluster)

Group of orthologs #424. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:259 P.pallidum:165

E9ADU1              	100.00%		D3B601              	100.00%
Bootstrap support for E9ADU1 as seed ortholog is 100%.
Bootstrap support for D3B601 as seed ortholog is 99%.

Group of orthologs #425. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:109

O97016              	100.00%		D3BEC0              	100.00%
Bootstrap support for O97016 as seed ortholog is 99%.
Bootstrap support for D3BEC0 as seed ortholog is 100%.

Group of orthologs #426. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:259 P.pallidum:259

Q4Q1U2              	100.00%		D3BCZ2              	100.00%
Bootstrap support for Q4Q1U2 as seed ortholog is 100%.
Bootstrap support for D3BCZ2 as seed ortholog is 100%.

Group of orthologs #427. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:259 P.pallidum:259

Q4Q1R5              	100.00%		D3BHC9              	100.00%
Bootstrap support for Q4Q1R5 as seed ortholog is 100%.
Bootstrap support for D3BHC9 as seed ortholog is 100%.

Group of orthologs #428. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:129

Q4QFG6              	100.00%		D3BH32              	100.00%
Bootstrap support for Q4QFG6 as seed ortholog is 83%.
Bootstrap support for D3BH32 as seed ortholog is 99%.

Group of orthologs #429. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:31 P.pallidum:35

Q4QBH1              	100.00%		D3BQE6              	100.00%
Bootstrap support for Q4QBH1 as seed ortholog is 91%.
Bootstrap support for D3BQE6 as seed ortholog is 93%.

Group of orthologs #430. Best score 258 bits
Score difference with first non-orthologous sequence - L.major:258 P.pallidum:258

Q4QHE5              	100.00%		D3BR13              	100.00%
Bootstrap support for Q4QHE5 as seed ortholog is 100%.
Bootstrap support for D3BR13 as seed ortholog is 100%.

Group of orthologs #431. Best score 257 bits
Score difference with first non-orthologous sequence - L.major:257 P.pallidum:257

Q4Q2S0              	100.00%		D3B4H2              	100.00%
Bootstrap support for Q4Q2S0 as seed ortholog is 100%.
Bootstrap support for D3B4H2 as seed ortholog is 100%.

Group of orthologs #432. Best score 257 bits
Score difference with first non-orthologous sequence - L.major:257 P.pallidum:257

Q4QG60              	100.00%		D3AVI8              	100.00%
Bootstrap support for Q4QG60 as seed ortholog is 100%.
Bootstrap support for D3AVI8 as seed ortholog is 100%.

Group of orthologs #433. Best score 256 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:94

Q4QIV8              	100.00%		D3B1I2              	100.00%
Bootstrap support for Q4QIV8 as seed ortholog is 98%.
Bootstrap support for D3B1I2 as seed ortholog is 97%.

Group of orthologs #434. Best score 255 bits
Score difference with first non-orthologous sequence - L.major:255 P.pallidum:255

E9AEI4              	100.00%		D3B501              	100.00%
Bootstrap support for E9AEI4 as seed ortholog is 100%.
Bootstrap support for D3B501 as seed ortholog is 100%.

Group of orthologs #435. Best score 255 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:147

Q4QFQ0              	100.00%		D3B6H6              	100.00%
Bootstrap support for Q4QFQ0 as seed ortholog is 82%.
Bootstrap support for D3B6H6 as seed ortholog is 99%.

Group of orthologs #436. Best score 255 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:139

Q4QGV4              	100.00%		D3B972              	100.00%
Bootstrap support for Q4QGV4 as seed ortholog is 95%.
Bootstrap support for D3B972 as seed ortholog is 99%.

Group of orthologs #437. Best score 254 bits
Score difference with first non-orthologous sequence - L.major:159 P.pallidum:193

Q4QDK0              	100.00%		D3B2T1              	100.00%
Bootstrap support for Q4QDK0 as seed ortholog is 99%.
Bootstrap support for D3B2T1 as seed ortholog is 100%.

Group of orthologs #438. Best score 254 bits
Score difference with first non-orthologous sequence - L.major:254 P.pallidum:254

Q4QH56              	100.00%		D3BM08              	100.00%
Bootstrap support for Q4QH56 as seed ortholog is 100%.
Bootstrap support for D3BM08 as seed ortholog is 100%.

Group of orthologs #439. Best score 253 bits
Score difference with first non-orthologous sequence - L.major:253 P.pallidum:253

O97213              	100.00%		D3BLP0              	100.00%
Bootstrap support for O97213 as seed ortholog is 100%.
Bootstrap support for D3BLP0 as seed ortholog is 100%.

Group of orthologs #440. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.pallidum:252

Q4Q7W0              	100.00%		D3AXY6              	100.00%
Bootstrap support for Q4Q7W0 as seed ortholog is 100%.
Bootstrap support for D3AXY6 as seed ortholog is 100%.

Group of orthologs #441. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.pallidum:54

Q4QB38              	100.00%		D3B210              	100.00%
Bootstrap support for Q4QB38 as seed ortholog is 100%.
Bootstrap support for D3B210 as seed ortholog is 90%.

Group of orthologs #442. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.pallidum:191

Q4Q9F9              	100.00%		D3B6A7              	100.00%
Bootstrap support for Q4Q9F9 as seed ortholog is 100%.
Bootstrap support for D3B6A7 as seed ortholog is 99%.

Group of orthologs #443. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.pallidum:191

Q4Q9L8              	100.00%		D3BAT4              	100.00%
Bootstrap support for Q4Q9L8 as seed ortholog is 100%.
Bootstrap support for D3BAT4 as seed ortholog is 100%.

Group of orthologs #444. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.pallidum:165

Q4Q7R7              	100.00%		D3BM07              	100.00%
Bootstrap support for Q4Q7R7 as seed ortholog is 100%.
Bootstrap support for D3BM07 as seed ortholog is 100%.

Group of orthologs #445. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.pallidum:252

Q4QGW6              	100.00%		D3BUT9              	100.00%
Bootstrap support for Q4QGW6 as seed ortholog is 100%.
Bootstrap support for D3BUT9 as seed ortholog is 100%.

Group of orthologs #446. Best score 251 bits
Score difference with first non-orthologous sequence - L.major:251 P.pallidum:251

Q4Q932              	100.00%		D3B5U9              	100.00%
Bootstrap support for Q4Q932 as seed ortholog is 100%.
Bootstrap support for D3B5U9 as seed ortholog is 100%.

Group of orthologs #447. Best score 250 bits
Score difference with first non-orthologous sequence - L.major:250 P.pallidum:250

Q4Q887              	100.00%		D3BBM4              	100.00%
Bootstrap support for Q4Q887 as seed ortholog is 100%.
Bootstrap support for D3BBM4 as seed ortholog is 100%.

Group of orthologs #448. Best score 250 bits
Score difference with first non-orthologous sequence - L.major:250 P.pallidum:250

Q4QEK4              	100.00%		D3BII4              	100.00%
Bootstrap support for Q4QEK4 as seed ortholog is 100%.
Bootstrap support for D3BII4 as seed ortholog is 100%.

Group of orthologs #449. Best score 250 bits
Score difference with first non-orthologous sequence - L.major:250 P.pallidum:250

Q4QEP9              	100.00%		D3BTM5              	100.00%
Bootstrap support for Q4QEP9 as seed ortholog is 100%.
Bootstrap support for D3BTM5 as seed ortholog is 100%.

Group of orthologs #450. Best score 248 bits
Score difference with first non-orthologous sequence - L.major:38 P.pallidum:187

Q4Q873              	100.00%		D3B511              	100.00%
Bootstrap support for Q4Q873 as seed ortholog is 84%.
Bootstrap support for D3B511 as seed ortholog is 100%.

Group of orthologs #451. Best score 248 bits
Score difference with first non-orthologous sequence - L.major:67 P.pallidum:248

Q4QJG7              	100.00%		D3BD10              	100.00%
Bootstrap support for Q4QJG7 as seed ortholog is 92%.
Bootstrap support for D3BD10 as seed ortholog is 100%.

Group of orthologs #452. Best score 247 bits
Score difference with first non-orthologous sequence - L.major:247 P.pallidum:247

Q4QBM3              	100.00%		D3AY97              	100.00%
Bootstrap support for Q4QBM3 as seed ortholog is 100%.
Bootstrap support for D3AY97 as seed ortholog is 100%.

Group of orthologs #453. Best score 247 bits
Score difference with first non-orthologous sequence - L.major:247 P.pallidum:247

Q4Q6Q3              	100.00%		D3B7N0              	100.00%
Bootstrap support for Q4Q6Q3 as seed ortholog is 100%.
Bootstrap support for D3B7N0 as seed ortholog is 100%.

Group of orthologs #454. Best score 247 bits
Score difference with first non-orthologous sequence - L.major:247 P.pallidum:247

Q4QHH6              	100.00%		D3AY55              	100.00%
Bootstrap support for Q4QHH6 as seed ortholog is 100%.
Bootstrap support for D3AY55 as seed ortholog is 100%.

Group of orthologs #455. Best score 247 bits
Score difference with first non-orthologous sequence - L.major:247 P.pallidum:173

Q4Q6Q0              	100.00%		D3B9R2              	100.00%
Bootstrap support for Q4Q6Q0 as seed ortholog is 100%.
Bootstrap support for D3B9R2 as seed ortholog is 99%.

Group of orthologs #456. Best score 246 bits
Score difference with first non-orthologous sequence - L.major:246 P.pallidum:246

Q4Q3K9              	100.00%		D3AWL4              	100.00%
Q4QH80              	67.18%		
Bootstrap support for Q4Q3K9 as seed ortholog is 100%.
Bootstrap support for D3AWL4 as seed ortholog is 100%.

Group of orthologs #457. Best score 246 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:246

Q4QFL6              	100.00%		D3BU83              	100.00%
Bootstrap support for Q4QFL6 as seed ortholog is 98%.
Bootstrap support for D3BU83 as seed ortholog is 100%.

Group of orthologs #458. Best score 245 bits
Score difference with first non-orthologous sequence - L.major:245 P.pallidum:245

Q4Q510              	100.00%		D3AYG8              	100.00%
Bootstrap support for Q4Q510 as seed ortholog is 100%.
Bootstrap support for D3AYG8 as seed ortholog is 100%.

Group of orthologs #459. Best score 245 bits
Score difference with first non-orthologous sequence - L.major:245 P.pallidum:245

Q4Q1M7              	100.00%		D3B206              	100.00%
Bootstrap support for Q4Q1M7 as seed ortholog is 100%.
Bootstrap support for D3B206 as seed ortholog is 100%.

Group of orthologs #460. Best score 244 bits
Score difference with first non-orthologous sequence - L.major:136 P.pallidum:151

Q4Q5Y6              	100.00%		D3AXX6              	100.00%
Bootstrap support for Q4Q5Y6 as seed ortholog is 99%.
Bootstrap support for D3AXX6 as seed ortholog is 99%.

Group of orthologs #461. Best score 244 bits
Score difference with first non-orthologous sequence - L.major:244 P.pallidum:244

P84155              	100.00%		D3BUX6              	100.00%
Bootstrap support for P84155 as seed ortholog is 100%.
Bootstrap support for D3BUX6 as seed ortholog is 100%.

Group of orthologs #462. Best score 243 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:72

Q4QIN6              	100.00%		D3B3M6              	100.00%
Bootstrap support for Q4QIN6 as seed ortholog is 96%.
Bootstrap support for D3B3M6 as seed ortholog is 99%.

Group of orthologs #463. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:89

Q4QDB7              	100.00%		D3BND6              	100.00%
Q4QDB6              	94.38%		
Q4QDB5              	57.30%		
Bootstrap support for Q4QDB7 as seed ortholog is 99%.
Bootstrap support for D3BND6 as seed ortholog is 96%.

Group of orthologs #464. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:52

P22045              	100.00%		D3BR73              	100.00%
Q4Q5N9              	25.89%		
Bootstrap support for P22045 as seed ortholog is 99%.
Bootstrap support for D3BR73 as seed ortholog is 93%.

Group of orthologs #465. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:242 P.pallidum:242

Q4QJ88              	100.00%		D3B606              	100.00%
Bootstrap support for Q4QJ88 as seed ortholog is 100%.
Bootstrap support for D3B606 as seed ortholog is 100%.

Group of orthologs #466. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:242 P.pallidum:242

Q4Q0Q0              	100.00%		D3BRK4              	100.00%
Bootstrap support for Q4Q0Q0 as seed ortholog is 100%.
Bootstrap support for D3BRK4 as seed ortholog is 100%.

Group of orthologs #467. Best score 241 bits
Score difference with first non-orthologous sequence - L.major:241 P.pallidum:241

Q4QCT3              	100.00%		D3B6L9              	100.00%
Bootstrap support for Q4QCT3 as seed ortholog is 100%.
Bootstrap support for D3B6L9 as seed ortholog is 100%.

Group of orthologs #468. Best score 241 bits
Score difference with first non-orthologous sequence - L.major:241 P.pallidum:241

Q4Q7B8              	100.00%		D3BU59              	100.00%
Bootstrap support for Q4Q7B8 as seed ortholog is 100%.
Bootstrap support for D3BU59 as seed ortholog is 100%.

Group of orthologs #469. Best score 240 bits
Score difference with first non-orthologous sequence - L.major:240 P.pallidum:84

Q4Q198              	100.00%		D3AVX5              	100.00%
Bootstrap support for Q4Q198 as seed ortholog is 100%.
Bootstrap support for D3AVX5 as seed ortholog is 99%.

Group of orthologs #470. Best score 240 bits
Score difference with first non-orthologous sequence - L.major:240 P.pallidum:240

Q4Q969              	100.00%		D3B6P0              	100.00%
Bootstrap support for Q4Q969 as seed ortholog is 100%.
Bootstrap support for D3B6P0 as seed ortholog is 100%.

Group of orthologs #471. Best score 239 bits
Score difference with first non-orthologous sequence - L.major:239 P.pallidum:239

Q4Q882              	100.00%		D3AYM5              	100.00%
Bootstrap support for Q4Q882 as seed ortholog is 100%.
Bootstrap support for D3AYM5 as seed ortholog is 100%.

Group of orthologs #472. Best score 239 bits
Score difference with first non-orthologous sequence - L.major:140 P.pallidum:131

E9ACK2              	100.00%		D3BKR3              	100.00%
Bootstrap support for E9ACK2 as seed ortholog is 99%.
Bootstrap support for D3BKR3 as seed ortholog is 99%.

Group of orthologs #473. Best score 239 bits
Score difference with first non-orthologous sequence - L.major:239 P.pallidum:239

Q4QA84              	100.00%		D3BTL6              	100.00%
Bootstrap support for Q4QA84 as seed ortholog is 100%.
Bootstrap support for D3BTL6 as seed ortholog is 100%.

Group of orthologs #474. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:238 P.pallidum:103

Q4QIY1              	100.00%		D3B4A8              	100.00%
                    	       		D3B5R2              	40.87%
                    	       		D3B5I2              	32.69%
Bootstrap support for Q4QIY1 as seed ortholog is 100%.
Bootstrap support for D3B4A8 as seed ortholog is 99%.

Group of orthologs #475. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:238 P.pallidum:238

Q4Q5W4              	100.00%		D3BCX8              	100.00%
Bootstrap support for Q4Q5W4 as seed ortholog is 100%.
Bootstrap support for D3BCX8 as seed ortholog is 100%.

Group of orthologs #476. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:238 P.pallidum:106

Q4Q8W4              	100.00%		D3BLP1              	100.00%
Bootstrap support for Q4Q8W4 as seed ortholog is 100%.
Bootstrap support for D3BLP1 as seed ortholog is 99%.

Group of orthologs #477. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:238 P.pallidum:238

Q4QF57              	100.00%		D3BK02              	100.00%
Bootstrap support for Q4QF57 as seed ortholog is 100%.
Bootstrap support for D3BK02 as seed ortholog is 100%.

Group of orthologs #478. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:110 P.pallidum:238

Q4Q9X7              	100.00%		D3BQK5              	100.00%
Bootstrap support for Q4Q9X7 as seed ortholog is 88%.
Bootstrap support for D3BQK5 as seed ortholog is 100%.

Group of orthologs #479. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:194 P.pallidum:133

Q4Q8F1              	100.00%		D3BS34              	100.00%
Bootstrap support for Q4Q8F1 as seed ortholog is 99%.
Bootstrap support for D3BS34 as seed ortholog is 99%.

Group of orthologs #480. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:238 P.pallidum:238

Q6XFB3              	100.00%		D3BJZ6              	100.00%
Bootstrap support for Q6XFB3 as seed ortholog is 100%.
Bootstrap support for D3BJZ6 as seed ortholog is 100%.

Group of orthologs #481. Best score 237 bits
Score difference with first non-orthologous sequence - L.major:237 P.pallidum:237

Q4QH08              	100.00%		D3B3Z0              	100.00%
Bootstrap support for Q4QH08 as seed ortholog is 100%.
Bootstrap support for D3B3Z0 as seed ortholog is 100%.

Group of orthologs #482. Best score 236 bits
Score difference with first non-orthologous sequence - L.major:163 P.pallidum:236

Q4Q9H4              	100.00%		D3BVG5              	100.00%
Bootstrap support for Q4Q9H4 as seed ortholog is 100%.
Bootstrap support for D3BVG5 as seed ortholog is 100%.

Group of orthologs #483. Best score 236 bits
Score difference with first non-orthologous sequence - L.major:236 P.pallidum:192

Q4QFV4              	100.00%		D3BSE8              	100.00%
Bootstrap support for Q4QFV4 as seed ortholog is 100%.
Bootstrap support for D3BSE8 as seed ortholog is 100%.

Group of orthologs #484. Best score 234 bits
Score difference with first non-orthologous sequence - L.major:148 P.pallidum:234

Q4Q9S8              	100.00%		D3B2U8              	100.00%
Bootstrap support for Q4Q9S8 as seed ortholog is 99%.
Bootstrap support for D3B2U8 as seed ortholog is 100%.

Group of orthologs #485. Best score 234 bits
Score difference with first non-orthologous sequence - L.major:171 P.pallidum:60

Q9GNC1              	100.00%		D3BGI7              	100.00%
Bootstrap support for Q9GNC1 as seed ortholog is 100%.
Bootstrap support for D3BGI7 as seed ortholog is 99%.

Group of orthologs #486. Best score 233 bits
Score difference with first non-orthologous sequence - L.major:233 P.pallidum:29

Q4QI61              	100.00%		D3B314              	100.00%
Q4QI66              	100.00%		
Q4QI64              	69.74%		
Q4QI62              	69.44%		
Q4QI65              	69.44%		
Q4QI67              	69.01%		
Q4QI68              	67.69%		
Q4QD68              	14.62%		
Bootstrap support for Q4QI61 as seed ortholog is 100%.
Bootstrap support for Q4QI66 as seed ortholog is 100%.
Bootstrap support for D3B314 as seed ortholog is 72%.
Alternative seed ortholog is D3BAH0 (29 bits away from this cluster)

Group of orthologs #487. Best score 233 bits
Score difference with first non-orthologous sequence - L.major:85 P.pallidum:42

Q4Q573              	100.00%		D3BGU2              	100.00%
Bootstrap support for Q4Q573 as seed ortholog is 98%.
Bootstrap support for D3BGU2 as seed ortholog is 93%.

Group of orthologs #488. Best score 231 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:231

Q4QH82              	100.00%		D3BBH0              	100.00%
Q4QHL7              	100.00%		
E9ACJ5              	38.26%		
Bootstrap support for Q4QH82 as seed ortholog is 85%.
Bootstrap support for Q4QHL7 as seed ortholog is 84%.
Bootstrap support for D3BBH0 as seed ortholog is 100%.

Group of orthologs #489. Best score 231 bits
Score difference with first non-orthologous sequence - L.major:231 P.pallidum:231

Q4QIZ4              	100.00%		D3AXC9              	100.00%
Bootstrap support for Q4QIZ4 as seed ortholog is 100%.
Bootstrap support for D3AXC9 as seed ortholog is 100%.

Group of orthologs #490. Best score 231 bits
Score difference with first non-orthologous sequence - L.major:231 P.pallidum:231

Q95Z84              	100.00%		D3BHT0              	100.00%
Bootstrap support for Q95Z84 as seed ortholog is 100%.
Bootstrap support for D3BHT0 as seed ortholog is 100%.

Group of orthologs #491. Best score 229 bits
Score difference with first non-orthologous sequence - L.major:229 P.pallidum:229

Q4QDU3              	100.00%		D3AYB4              	100.00%
                    	       		D3AWU8              	22.15%
Bootstrap support for Q4QDU3 as seed ortholog is 100%.
Bootstrap support for D3AYB4 as seed ortholog is 100%.

Group of orthologs #492. Best score 229 bits
Score difference with first non-orthologous sequence - L.major:229 P.pallidum:229

Q4Q9Q5              	100.00%		D3BEZ3              	100.00%
Bootstrap support for Q4Q9Q5 as seed ortholog is 100%.
Bootstrap support for D3BEZ3 as seed ortholog is 100%.

Group of orthologs #493. Best score 229 bits
Score difference with first non-orthologous sequence - L.major:229 P.pallidum:229

Q4QHU0              	100.00%		D3BQU0              	100.00%
Bootstrap support for Q4QHU0 as seed ortholog is 100%.
Bootstrap support for D3BQU0 as seed ortholog is 100%.

Group of orthologs #494. Best score 228 bits
Score difference with first non-orthologous sequence - L.major:228 P.pallidum:228

Q4Q9H1              	100.00%		D3AX31              	100.00%
Bootstrap support for Q4Q9H1 as seed ortholog is 100%.
Bootstrap support for D3AX31 as seed ortholog is 100%.

Group of orthologs #495. Best score 228 bits
Score difference with first non-orthologous sequence - L.major:228 P.pallidum:228

Q4Q0P6              	100.00%		D3B6H8              	100.00%
Bootstrap support for Q4Q0P6 as seed ortholog is 100%.
Bootstrap support for D3B6H8 as seed ortholog is 100%.

Group of orthologs #496. Best score 226 bits
Score difference with first non-orthologous sequence - L.major:226 P.pallidum:226

Q4QFZ2              	100.00%		D3BMA3              	100.00%
Bootstrap support for Q4QFZ2 as seed ortholog is 100%.
Bootstrap support for D3BMA3 as seed ortholog is 100%.

Group of orthologs #497. Best score 225 bits
Score difference with first non-orthologous sequence - L.major:33 P.pallidum:225

E9AC56              	100.00%		D3B6D9              	100.00%
Bootstrap support for E9AC56 as seed ortholog is 75%.
Bootstrap support for D3B6D9 as seed ortholog is 100%.

Group of orthologs #498. Best score 225 bits
Score difference with first non-orthologous sequence - L.major:225 P.pallidum:58

Q4Q428              	100.00%		D3B612              	100.00%
Bootstrap support for Q4Q428 as seed ortholog is 100%.
Bootstrap support for D3B612 as seed ortholog is 96%.

Group of orthologs #499. Best score 225 bits
Score difference with first non-orthologous sequence - L.major:225 P.pallidum:225

Q4Q5P8              	100.00%		D3BJN3              	100.00%
Bootstrap support for Q4Q5P8 as seed ortholog is 100%.
Bootstrap support for D3BJN3 as seed ortholog is 100%.

Group of orthologs #500. Best score 225 bits
Score difference with first non-orthologous sequence - L.major:225 P.pallidum:225

Q4QGY0              	100.00%		D3BJF3              	100.00%
Bootstrap support for Q4QGY0 as seed ortholog is 100%.
Bootstrap support for D3BJF3 as seed ortholog is 100%.

Group of orthologs #501. Best score 224 bits
Score difference with first non-orthologous sequence - L.major:224 P.pallidum:224

Q4QJ37              	100.00%		D3BBQ8              	100.00%
Q4QJ39              	100.00%		
Bootstrap support for Q4QJ37 as seed ortholog is 100%.
Bootstrap support for Q4QJ39 as seed ortholog is 100%.
Bootstrap support for D3BBQ8 as seed ortholog is 100%.

Group of orthologs #502. Best score 224 bits
Score difference with first non-orthologous sequence - L.major:224 P.pallidum:224

Q4Q842              	100.00%		D3BD73              	100.00%
Bootstrap support for Q4Q842 as seed ortholog is 100%.
Bootstrap support for D3BD73 as seed ortholog is 100%.

Group of orthologs #503. Best score 223 bits
Score difference with first non-orthologous sequence - L.major:223 P.pallidum:223

Q4Q286              	100.00%		D3B485              	100.00%
Bootstrap support for Q4Q286 as seed ortholog is 100%.
Bootstrap support for D3B485 as seed ortholog is 100%.

Group of orthologs #504. Best score 223 bits
Score difference with first non-orthologous sequence - L.major:147 P.pallidum:135

Q4QG26              	100.00%		D3B3M9              	100.00%
Bootstrap support for Q4QG26 as seed ortholog is 100%.
Bootstrap support for D3B3M9 as seed ortholog is 99%.

Group of orthologs #505. Best score 223 bits
Score difference with first non-orthologous sequence - L.major:223 P.pallidum:223

Q4Q0Q3              	100.00%		D3BI96              	100.00%
Bootstrap support for Q4Q0Q3 as seed ortholog is 100%.
Bootstrap support for D3BI96 as seed ortholog is 100%.

Group of orthologs #506. Best score 223 bits
Score difference with first non-orthologous sequence - L.major:20 P.pallidum:144

Q4QBH2              	100.00%		D3BEP4              	100.00%
Bootstrap support for Q4QBH2 as seed ortholog is 78%.
Bootstrap support for D3BEP4 as seed ortholog is 100%.

Group of orthologs #507. Best score 222 bits
Score difference with first non-orthologous sequence - L.major:222 P.pallidum:222

E9ACZ6              	100.00%		D3B2Q1              	100.00%
Bootstrap support for E9ACZ6 as seed ortholog is 100%.
Bootstrap support for D3B2Q1 as seed ortholog is 100%.

Group of orthologs #508. Best score 222 bits
Score difference with first non-orthologous sequence - L.major:222 P.pallidum:140

Q4Q4Z3              	100.00%		D3B5T9              	100.00%
Bootstrap support for Q4Q4Z3 as seed ortholog is 100%.
Bootstrap support for D3B5T9 as seed ortholog is 99%.

Group of orthologs #509. Best score 222 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:64

Q4Q2T6              	100.00%		D3BB75              	100.00%
Bootstrap support for Q4Q2T6 as seed ortholog is 95%.
Bootstrap support for D3BB75 as seed ortholog is 90%.

Group of orthologs #510. Best score 220 bits
Score difference with first non-orthologous sequence - L.major:220 P.pallidum:220

Q4Q3A1              	100.00%		D3B1H2              	100.00%
Bootstrap support for Q4Q3A1 as seed ortholog is 100%.
Bootstrap support for D3B1H2 as seed ortholog is 100%.

Group of orthologs #511. Best score 220 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:220

E9AD22              	100.00%		D3BCJ7              	100.00%
Bootstrap support for E9AD22 as seed ortholog is 99%.
Bootstrap support for D3BCJ7 as seed ortholog is 100%.

Group of orthologs #512. Best score 220 bits
Score difference with first non-orthologous sequence - L.major:220 P.pallidum:220

Q4QDX9              	100.00%		D3BAC7              	100.00%
Bootstrap support for Q4QDX9 as seed ortholog is 100%.
Bootstrap support for D3BAC7 as seed ortholog is 100%.

Group of orthologs #513. Best score 219 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:219

Q4Q3Z4              	100.00%		D3BTS5              	100.00%
Q4QI56              	27.64%		
Q4Q0M2              	26.42%		
Bootstrap support for Q4Q3Z4 as seed ortholog is 97%.
Bootstrap support for D3BTS5 as seed ortholog is 100%.

Group of orthologs #514. Best score 219 bits
Score difference with first non-orthologous sequence - L.major:219 P.pallidum:219

E9ADB9              	100.00%		D3AX76              	100.00%
Bootstrap support for E9ADB9 as seed ortholog is 100%.
Bootstrap support for D3AX76 as seed ortholog is 100%.

Group of orthologs #515. Best score 219 bits
Score difference with first non-orthologous sequence - L.major:219 P.pallidum:219

Q4QFV0              	100.00%		D3BUK1              	100.00%
Bootstrap support for Q4QFV0 as seed ortholog is 100%.
Bootstrap support for D3BUK1 as seed ortholog is 100%.

Group of orthologs #516. Best score 218 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:218

Q4Q0H2              	100.00%		D3BDL6              	100.00%
Bootstrap support for Q4Q0H2 as seed ortholog is 99%.
Bootstrap support for D3BDL6 as seed ortholog is 100%.

Group of orthologs #517. Best score 218 bits
Score difference with first non-orthologous sequence - L.major:76 P.pallidum:176

Q4QDK5              	100.00%		D3B264              	100.00%
Bootstrap support for Q4QDK5 as seed ortholog is 97%.
Bootstrap support for D3B264 as seed ortholog is 100%.

Group of orthologs #518. Best score 218 bits
Score difference with first non-orthologous sequence - L.major:218 P.pallidum:218

Q4Q2Z0              	100.00%		D3BT09              	100.00%
Bootstrap support for Q4Q2Z0 as seed ortholog is 100%.
Bootstrap support for D3BT09 as seed ortholog is 100%.

Group of orthologs #519. Best score 217 bits
Score difference with first non-orthologous sequence - L.major:36 P.pallidum:217

Q4QD19              	100.00%		D3AXR9              	100.00%
Bootstrap support for Q4QD19 as seed ortholog is 87%.
Bootstrap support for D3AXR9 as seed ortholog is 100%.

Group of orthologs #520. Best score 217 bits
Score difference with first non-orthologous sequence - L.major:217 P.pallidum:217

Q4Q7R9              	100.00%		D3B5X8              	100.00%
Bootstrap support for Q4Q7R9 as seed ortholog is 100%.
Bootstrap support for D3B5X8 as seed ortholog is 100%.

Group of orthologs #521. Best score 217 bits
Score difference with first non-orthologous sequence - L.major:217 P.pallidum:217

Q868B1              	100.00%		D3AYQ3              	100.00%
Bootstrap support for Q868B1 as seed ortholog is 100%.
Bootstrap support for D3AYQ3 as seed ortholog is 100%.

Group of orthologs #522. Best score 216 bits
Score difference with first non-orthologous sequence - L.major:216 P.pallidum:216

E9AE08              	100.00%		D3BKF4              	100.00%
Bootstrap support for E9AE08 as seed ortholog is 100%.
Bootstrap support for D3BKF4 as seed ortholog is 100%.

Group of orthologs #523. Best score 216 bits
Score difference with first non-orthologous sequence - L.major:216 P.pallidum:216

Q4Q0Z6              	100.00%		D3BK06              	100.00%
Bootstrap support for Q4Q0Z6 as seed ortholog is 100%.
Bootstrap support for D3BK06 as seed ortholog is 100%.

Group of orthologs #524. Best score 216 bits
Score difference with first non-orthologous sequence - L.major:216 P.pallidum:216

Q4Q5C3              	100.00%		D3BRI8              	100.00%
Bootstrap support for Q4Q5C3 as seed ortholog is 100%.
Bootstrap support for D3BRI8 as seed ortholog is 100%.

Group of orthologs #525. Best score 215 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:31

Q4QEZ0              	100.00%		D3AZY1              	100.00%
                    	       		D3BQR1              	18.22%
Bootstrap support for Q4QEZ0 as seed ortholog is 98%.
Bootstrap support for D3AZY1 as seed ortholog is 78%.

Group of orthologs #526. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:214 P.pallidum:214

E9AG00              	100.00%		D3AWA6              	100.00%
Bootstrap support for E9AG00 as seed ortholog is 100%.
Bootstrap support for D3AWA6 as seed ortholog is 100%.

Group of orthologs #527. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:31 P.pallidum:214

Q4Q7L5              	100.00%		D3B9J0              	100.00%
Bootstrap support for Q4Q7L5 as seed ortholog is 81%.
Bootstrap support for D3B9J0 as seed ortholog is 100%.

Group of orthologs #528. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:214 P.pallidum:214

Q4Q0L5              	100.00%		D3BIL7              	100.00%
Bootstrap support for Q4Q0L5 as seed ortholog is 100%.
Bootstrap support for D3BIL7 as seed ortholog is 100%.

Group of orthologs #529. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:214 P.pallidum:214

Q4QDZ7              	100.00%		D3BCD0              	100.00%
Bootstrap support for Q4QDZ7 as seed ortholog is 100%.
Bootstrap support for D3BCD0 as seed ortholog is 100%.

Group of orthologs #530. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:214 P.pallidum:214

Q4Q8D4              	100.00%		D3BQE1              	100.00%
Bootstrap support for Q4Q8D4 as seed ortholog is 100%.
Bootstrap support for D3BQE1 as seed ortholog is 100%.

Group of orthologs #531. Best score 213 bits
Score difference with first non-orthologous sequence - L.major:213 P.pallidum:213

E9AF57              	100.00%		D3AY61              	100.00%
Bootstrap support for E9AF57 as seed ortholog is 100%.
Bootstrap support for D3AY61 as seed ortholog is 100%.

Group of orthologs #532. Best score 213 bits
Score difference with first non-orthologous sequence - L.major:154 P.pallidum:119

P69201              	100.00%		D3BHB9              	100.00%
Bootstrap support for P69201 as seed ortholog is 100%.
Bootstrap support for D3BHB9 as seed ortholog is 100%.

Group of orthologs #533. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:212 P.pallidum:44

Q4Q4Q4              	100.00%		D3B388              	100.00%
Bootstrap support for Q4Q4Q4 as seed ortholog is 100%.
Bootstrap support for D3B388 as seed ortholog is 87%.

Group of orthologs #534. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:212 P.pallidum:212

E9ADC7              	100.00%		D3BBL0              	100.00%
Bootstrap support for E9ADC7 as seed ortholog is 100%.
Bootstrap support for D3BBL0 as seed ortholog is 100%.

Group of orthologs #535. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:212 P.pallidum:114

Q4QAC7              	100.00%		D3BUV0              	100.00%
Bootstrap support for Q4QAC7 as seed ortholog is 100%.
Bootstrap support for D3BUV0 as seed ortholog is 99%.

Group of orthologs #536. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:212 P.pallidum:212

Q4QF35              	100.00%		D3BSY5              	100.00%
Bootstrap support for Q4QF35 as seed ortholog is 100%.
Bootstrap support for D3BSY5 as seed ortholog is 100%.

Group of orthologs #537. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:151 P.pallidum:74

Q9NED4              	100.00%		D3BR84              	100.00%
Bootstrap support for Q9NED4 as seed ortholog is 100%.
Bootstrap support for D3BR84 as seed ortholog is 99%.

Group of orthologs #538. Best score 211 bits
Score difference with first non-orthologous sequence - L.major:211 P.pallidum:158

Q4QF82              	100.00%		D3BB15              	100.00%
                    	       		D3BIM9              	31.82%
Bootstrap support for Q4QF82 as seed ortholog is 100%.
Bootstrap support for D3BB15 as seed ortholog is 100%.

Group of orthologs #539. Best score 211 bits
Score difference with first non-orthologous sequence - L.major:211 P.pallidum:211

Q4QCN1              	100.00%		D3BBK8              	100.00%
Bootstrap support for Q4QCN1 as seed ortholog is 100%.
Bootstrap support for D3BBK8 as seed ortholog is 100%.

Group of orthologs #540. Best score 211 bits
Score difference with first non-orthologous sequence - L.major:164 P.pallidum:165

Q4VQ66              	100.00%		D3BBE5              	100.00%
Bootstrap support for Q4VQ66 as seed ortholog is 99%.
Bootstrap support for D3BBE5 as seed ortholog is 100%.

Group of orthologs #541. Best score 211 bits
Score difference with first non-orthologous sequence - L.major:211 P.pallidum:211

Q4QAC8              	100.00%		D3BNW9              	100.00%
Bootstrap support for Q4QAC8 as seed ortholog is 100%.
Bootstrap support for D3BNW9 as seed ortholog is 100%.

Group of orthologs #542. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.pallidum:210

Q4Q8H1              	100.00%		D3B615              	100.00%
Bootstrap support for Q4Q8H1 as seed ortholog is 100%.
Bootstrap support for D3B615 as seed ortholog is 100%.

Group of orthologs #543. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.pallidum:108

E9ACY1              	100.00%		D3BVF2              	100.00%
Bootstrap support for E9ACY1 as seed ortholog is 100%.
Bootstrap support for D3BVF2 as seed ortholog is 98%.

Group of orthologs #544. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.pallidum:210

Q4QH67              	100.00%		D3BL35              	100.00%
Bootstrap support for Q4QH67 as seed ortholog is 100%.
Bootstrap support for D3BL35 as seed ortholog is 100%.

Group of orthologs #545. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.pallidum:26

Q9U1E1              	100.00%		D3BL27              	100.00%
Bootstrap support for Q9U1E1 as seed ortholog is 100%.
Bootstrap support for D3BL27 as seed ortholog is 89%.

Group of orthologs #546. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:10 P.pallidum:210

Q4QJ45              	100.00%		D3BSR4              	100.00%
Bootstrap support for Q4QJ45 as seed ortholog is 55%.
Alternative seed ortholog is Q4QHU7 (10 bits away from this cluster)
Bootstrap support for D3BSR4 as seed ortholog is 100%.

Group of orthologs #547. Best score 209 bits
Score difference with first non-orthologous sequence - L.major:209 P.pallidum:209

Q4Q933              	100.00%		D3B2Q7              	100.00%
Bootstrap support for Q4Q933 as seed ortholog is 100%.
Bootstrap support for D3B2Q7 as seed ortholog is 100%.

Group of orthologs #548. Best score 209 bits
Score difference with first non-orthologous sequence - L.major:209 P.pallidum:209

Q4QGF7              	100.00%		D3B625              	100.00%
Bootstrap support for Q4QGF7 as seed ortholog is 100%.
Bootstrap support for D3B625 as seed ortholog is 100%.

Group of orthologs #549. Best score 209 bits
Score difference with first non-orthologous sequence - L.major:209 P.pallidum:209

Q4QF34              	100.00%		D3BPM7              	100.00%
Bootstrap support for Q4QF34 as seed ortholog is 100%.
Bootstrap support for D3BPM7 as seed ortholog is 100%.

Group of orthologs #550. Best score 208 bits
Score difference with first non-orthologous sequence - L.major:208 P.pallidum:106

Q4Q1K0              	100.00%		D3AYE3              	100.00%
Q4QFU7              	6.92%		
Bootstrap support for Q4Q1K0 as seed ortholog is 100%.
Bootstrap support for D3AYE3 as seed ortholog is 99%.

Group of orthologs #551. Best score 208 bits
Score difference with first non-orthologous sequence - L.major:208 P.pallidum:208

Q4Q4A0              	100.00%		D3BBF0              	100.00%
Bootstrap support for Q4Q4A0 as seed ortholog is 100%.
Bootstrap support for D3BBF0 as seed ortholog is 100%.

Group of orthologs #552. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.pallidum:142

Q9NE54              	100.00%		D3BV70              	100.00%
                    	       		D3AZ84              	5.67%
                    	       		D3BIT7              	5.27%
Bootstrap support for Q9NE54 as seed ortholog is 100%.
Bootstrap support for D3BV70 as seed ortholog is 99%.

Group of orthologs #553. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.pallidum:207

Q4QAP8              	100.00%		D3B782              	100.00%
                    	       		D3AX99              	61.00%
Bootstrap support for Q4QAP8 as seed ortholog is 100%.
Bootstrap support for D3B782 as seed ortholog is 100%.

Group of orthologs #554. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.pallidum:207

E9ADG7              	100.00%		D3AZH8              	100.00%
Bootstrap support for E9ADG7 as seed ortholog is 100%.
Bootstrap support for D3AZH8 as seed ortholog is 100%.

Group of orthologs #555. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.pallidum:207

Q4QD94              	100.00%		D3AXB8              	100.00%
Bootstrap support for Q4QD94 as seed ortholog is 100%.
Bootstrap support for D3AXB8 as seed ortholog is 100%.

Group of orthologs #556. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:48

E9ACY2              	100.00%		D3BG42              	100.00%
Bootstrap support for E9ACY2 as seed ortholog is 95%.
Bootstrap support for D3BG42 as seed ortholog is 86%.

Group of orthologs #557. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.pallidum:207

E9AD51              	100.00%		D3BQU8              	100.00%
Bootstrap support for E9AD51 as seed ortholog is 100%.
Bootstrap support for D3BQU8 as seed ortholog is 100%.

Group of orthologs #558. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.pallidum:207

Q4Q786              	100.00%		D3BJM4              	100.00%
Bootstrap support for Q4Q786 as seed ortholog is 100%.
Bootstrap support for D3BJM4 as seed ortholog is 100%.

Group of orthologs #559. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:205 P.pallidum:113

Q4Q059              	100.00%		D3BPL3              	100.00%
                    	       		D3BP03              	52.89%
Bootstrap support for Q4Q059 as seed ortholog is 100%.
Bootstrap support for D3BPL3 as seed ortholog is 99%.

Group of orthologs #560. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:51

Q4Q3J7              	100.00%		D3AY59              	100.00%
Bootstrap support for Q4Q3J7 as seed ortholog is 99%.
Bootstrap support for D3AY59 as seed ortholog is 96%.

Group of orthologs #561. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:205

Q4Q5T1              	100.00%		D3AZ74              	100.00%
Bootstrap support for Q4Q5T1 as seed ortholog is 99%.
Bootstrap support for D3AZ74 as seed ortholog is 100%.

Group of orthologs #562. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:205 P.pallidum:205

Q4Q6X9              	100.00%		D3AYZ5              	100.00%
Bootstrap support for Q4Q6X9 as seed ortholog is 100%.
Bootstrap support for D3AYZ5 as seed ortholog is 100%.

Group of orthologs #563. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:205 P.pallidum:205

E9AFW0              	100.00%		D3BIA4              	100.00%
Bootstrap support for E9AFW0 as seed ortholog is 100%.
Bootstrap support for D3BIA4 as seed ortholog is 100%.

Group of orthologs #564. Best score 204 bits
Score difference with first non-orthologous sequence - L.major:204 P.pallidum:204

Q4QDM8              	100.00%		D3BAJ3              	100.00%
Bootstrap support for Q4QDM8 as seed ortholog is 100%.
Bootstrap support for D3BAJ3 as seed ortholog is 100%.

Group of orthologs #565. Best score 204 bits
Score difference with first non-orthologous sequence - L.major:60 P.pallidum:204

Q4QH59              	100.00%		D3BL07              	100.00%
Bootstrap support for Q4QH59 as seed ortholog is 95%.
Bootstrap support for D3BL07 as seed ortholog is 100%.

Group of orthologs #566. Best score 203 bits
Score difference with first non-orthologous sequence - L.major:203 P.pallidum:203

Q4Q2B2              	100.00%		D3B010              	100.00%
Bootstrap support for Q4Q2B2 as seed ortholog is 100%.
Bootstrap support for D3B010 as seed ortholog is 100%.

Group of orthologs #567. Best score 203 bits
Score difference with first non-orthologous sequence - L.major:203 P.pallidum:203

E9ADB2              	100.00%		D3BJG8              	100.00%
Bootstrap support for E9ADB2 as seed ortholog is 100%.
Bootstrap support for D3BJG8 as seed ortholog is 100%.

Group of orthologs #568. Best score 203 bits
Score difference with first non-orthologous sequence - L.major:203 P.pallidum:203

Q4Q0R9              	100.00%		D3BL61              	100.00%
Bootstrap support for Q4Q0R9 as seed ortholog is 100%.
Bootstrap support for D3BL61 as seed ortholog is 100%.

Group of orthologs #569. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:39 P.pallidum:201

Q4QAA1              	100.00%		D3BHJ6              	100.00%
                    	       		D3B6I7              	18.15%
                    	       		D3BL03              	13.23%
                    	       		D3B2W9              	12.76%
                    	       		D3B027              	7.45%
Bootstrap support for Q4QAA1 as seed ortholog is 77%.
Bootstrap support for D3BHJ6 as seed ortholog is 100%.

Group of orthologs #570. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:201 P.pallidum:201

Q4Q1V1              	100.00%		D3BMH8              	100.00%
Q4QIM3              	100.00%		
Bootstrap support for Q4Q1V1 as seed ortholog is 100%.
Bootstrap support for Q4QIM3 as seed ortholog is 100%.
Bootstrap support for D3BMH8 as seed ortholog is 100%.

Group of orthologs #571. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:138 P.pallidum:33

Q4QAR5              	100.00%		D3BQB2              	100.00%
                    	       		D3BQB6              	27.08%
Bootstrap support for Q4QAR5 as seed ortholog is 99%.
Bootstrap support for D3BQB2 as seed ortholog is 76%.

Group of orthologs #572. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:201 P.pallidum:201

Q4Q6P0              	100.00%		D3B2I1              	100.00%
Bootstrap support for Q4Q6P0 as seed ortholog is 100%.
Bootstrap support for D3B2I1 as seed ortholog is 100%.

Group of orthologs #573. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:201 P.pallidum:201

P25204              	100.00%		D3BK61              	100.00%
Bootstrap support for P25204 as seed ortholog is 100%.
Bootstrap support for D3BK61 as seed ortholog is 100%.

Group of orthologs #574. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:60 P.pallidum:200

E9AEL3              	100.00%		D3AYY9              	100.00%
Bootstrap support for E9AEL3 as seed ortholog is 96%.
Bootstrap support for D3AYY9 as seed ortholog is 100%.

Group of orthologs #575. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:200 P.pallidum:200

E9AFE5              	100.00%		D3B3N5              	100.00%
Bootstrap support for E9AFE5 as seed ortholog is 100%.
Bootstrap support for D3B3N5 as seed ortholog is 100%.

Group of orthologs #576. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:200

E9ACB3              	100.00%		D3B8K6              	100.00%
Bootstrap support for E9ACB3 as seed ortholog is 99%.
Bootstrap support for D3B8K6 as seed ortholog is 100%.

Group of orthologs #577. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:200 P.pallidum:200

Q4QF52              	100.00%		D3B796              	100.00%
Bootstrap support for Q4QF52 as seed ortholog is 100%.
Bootstrap support for D3B796 as seed ortholog is 100%.

Group of orthologs #578. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:200 P.pallidum:200

Q4QAA9              	100.00%		D3BPW6              	100.00%
Bootstrap support for Q4QAA9 as seed ortholog is 100%.
Bootstrap support for D3BPW6 as seed ortholog is 100%.

Group of orthologs #579. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:64

Q9N2P5              	100.00%		D3BUX2              	100.00%
Bootstrap support for Q9N2P5 as seed ortholog is 99%.
Bootstrap support for D3BUX2 as seed ortholog is 97%.

Group of orthologs #580. Best score 199 bits
Score difference with first non-orthologous sequence - L.major:199 P.pallidum:199

Q4QB74              	100.00%		D3BG97              	100.00%
Bootstrap support for Q4QB74 as seed ortholog is 100%.
Bootstrap support for D3BG97 as seed ortholog is 100%.

Group of orthologs #581. Best score 199 bits
Score difference with first non-orthologous sequence - L.major:199 P.pallidum:119

Q4Q5P6              	100.00%		D3BQZ8              	100.00%
Bootstrap support for Q4Q5P6 as seed ortholog is 100%.
Bootstrap support for D3BQZ8 as seed ortholog is 99%.

Group of orthologs #582. Best score 198 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:52

Q4Q9V4              	100.00%		D3BV94              	100.00%
                    	       		D3BVB3              	53.46%
                    	       		D3BVB6              	47.07%
Bootstrap support for Q4Q9V4 as seed ortholog is 96%.
Bootstrap support for D3BV94 as seed ortholog is 95%.

Group of orthologs #583. Best score 198 bits
Score difference with first non-orthologous sequence - L.major:198 P.pallidum:198

Q4Q078              	100.00%		D3BF27              	100.00%
Bootstrap support for Q4Q078 as seed ortholog is 100%.
Bootstrap support for D3BF27 as seed ortholog is 100%.

Group of orthologs #584. Best score 198 bits
Score difference with first non-orthologous sequence - L.major:198 P.pallidum:198

Q4QJ17              	100.00%		D3B3L9              	100.00%
Bootstrap support for Q4QJ17 as seed ortholog is 100%.
Bootstrap support for D3B3L9 as seed ortholog is 100%.

Group of orthologs #585. Best score 197 bits
Score difference with first non-orthologous sequence - L.major:28 P.pallidum:83

Q4Q597              	100.00%		D3BD41              	100.00%
Q4Q596              	85.32%		D3BD39              	85.32%
Bootstrap support for Q4Q597 as seed ortholog is 81%.
Bootstrap support for D3BD41 as seed ortholog is 99%.

Group of orthologs #586. Best score 197 bits
Score difference with first non-orthologous sequence - L.major:197 P.pallidum:111

Q4Q8K7              	100.00%		D3AZ65              	100.00%
Bootstrap support for Q4Q8K7 as seed ortholog is 100%.
Bootstrap support for D3AZ65 as seed ortholog is 99%.

Group of orthologs #587. Best score 197 bits
Score difference with first non-orthologous sequence - L.major:197 P.pallidum:197

E9ACK6              	100.00%		D3BM29              	100.00%
Bootstrap support for E9ACK6 as seed ortholog is 100%.
Bootstrap support for D3BM29 as seed ortholog is 100%.

Group of orthologs #588. Best score 197 bits
Score difference with first non-orthologous sequence - L.major:197 P.pallidum:197

Q4QEL2              	100.00%		D3BPI1              	100.00%
Bootstrap support for Q4QEL2 as seed ortholog is 100%.
Bootstrap support for D3BPI1 as seed ortholog is 100%.

Group of orthologs #589. Best score 197 bits
Score difference with first non-orthologous sequence - L.major:197 P.pallidum:197

Q4QC89              	100.00%		D3BV90              	100.00%
Bootstrap support for Q4QC89 as seed ortholog is 100%.
Bootstrap support for D3BV90 as seed ortholog is 100%.

Group of orthologs #590. Best score 196 bits
Score difference with first non-orthologous sequence - L.major:196 P.pallidum:196

Q4Q8C4              	100.00%		D3BMF6              	100.00%
Q4Q8C5              	8.10%		
Bootstrap support for Q4Q8C4 as seed ortholog is 100%.
Bootstrap support for D3BMF6 as seed ortholog is 100%.

Group of orthologs #591. Best score 196 bits
Score difference with first non-orthologous sequence - L.major:196 P.pallidum:196

Q4QCD7              	100.00%		D3AYA8              	100.00%
Bootstrap support for Q4QCD7 as seed ortholog is 100%.
Bootstrap support for D3AYA8 as seed ortholog is 100%.

Group of orthologs #592. Best score 196 bits
Score difference with first non-orthologous sequence - L.major:196 P.pallidum:196

Q4Q1W2              	100.00%		D3BGU1              	100.00%
Bootstrap support for Q4Q1W2 as seed ortholog is 100%.
Bootstrap support for D3BGU1 as seed ortholog is 100%.

Group of orthologs #593. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:195

Q4Q5U8              	100.00%		D3BES1              	100.00%
                    	       		D3BGX1              	75.76%
Bootstrap support for Q4Q5U8 as seed ortholog is 100%.
Bootstrap support for D3BES1 as seed ortholog is 100%.

Group of orthologs #594. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:195

Q4Q580              	100.00%		D3AW49              	100.00%
Bootstrap support for Q4Q580 as seed ortholog is 100%.
Bootstrap support for D3AW49 as seed ortholog is 100%.

Group of orthologs #595. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:86

Q4QJK0              	100.00%		D3B2M5              	100.00%
Bootstrap support for Q4QJK0 as seed ortholog is 99%.
Bootstrap support for D3B2M5 as seed ortholog is 99%.

Group of orthologs #596. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:195

Q4QE67              	100.00%		D3B8D7              	100.00%
Bootstrap support for Q4QE67 as seed ortholog is 100%.
Bootstrap support for D3B8D7 as seed ortholog is 100%.

Group of orthologs #597. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:195

Q4QG31              	100.00%		D3BCZ8              	100.00%
Bootstrap support for Q4QG31 as seed ortholog is 100%.
Bootstrap support for D3BCZ8 as seed ortholog is 100%.

Group of orthologs #598. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:195

Q4QAU7              	100.00%		D3BMW4              	100.00%
Bootstrap support for Q4QAU7 as seed ortholog is 100%.
Bootstrap support for D3BMW4 as seed ortholog is 100%.

Group of orthologs #599. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.pallidum:195

Q4QI30              	100.00%		D3BQ33              	100.00%
Bootstrap support for Q4QI30 as seed ortholog is 100%.
Bootstrap support for D3BQ33 as seed ortholog is 100%.

Group of orthologs #600. Best score 194 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:90

E9ADV9              	100.00%		D3BL52              	100.00%
Q4QB77              	100.00%		
Bootstrap support for E9ADV9 as seed ortholog is 99%.
Bootstrap support for Q4QB77 as seed ortholog is 99%.
Bootstrap support for D3BL52 as seed ortholog is 99%.

Group of orthologs #601. Best score 194 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:82

E9ADC5              	100.00%		D3AX98              	100.00%
Bootstrap support for E9ADC5 as seed ortholog is 100%.
Bootstrap support for D3AX98 as seed ortholog is 99%.

Group of orthologs #602. Best score 194 bits
Score difference with first non-orthologous sequence - L.major:194 P.pallidum:194

Q4Q1W0              	100.00%		D3BKA5              	100.00%
Bootstrap support for Q4Q1W0 as seed ortholog is 100%.
Bootstrap support for D3BKA5 as seed ortholog is 100%.

Group of orthologs #603. Best score 193 bits
Score difference with first non-orthologous sequence - L.major:22 P.pallidum:193

Q4QFH9              	100.00%		D3BR16              	100.00%
Q4QBR9              	17.14%		
Q4QBS0              	8.57%		
Bootstrap support for Q4QFH9 as seed ortholog is 71%.
Alternative seed ortholog is Q4QG48 (22 bits away from this cluster)
Bootstrap support for D3BR16 as seed ortholog is 100%.

Group of orthologs #604. Best score 193 bits
Score difference with first non-orthologous sequence - L.major:193 P.pallidum:193

E9AFK3              	100.00%		D3BMX5              	100.00%
Bootstrap support for E9AFK3 as seed ortholog is 100%.
Bootstrap support for D3BMX5 as seed ortholog is 100%.

Group of orthologs #605. Best score 192 bits
Score difference with first non-orthologous sequence - L.major:192 P.pallidum:192

Q4Q3T5              	100.00%		D3B1Q0              	100.00%
Bootstrap support for Q4Q3T5 as seed ortholog is 100%.
Bootstrap support for D3B1Q0 as seed ortholog is 100%.

Group of orthologs #606. Best score 192 bits
Score difference with first non-orthologous sequence - L.major:49 P.pallidum:192

Q7KF27              	100.00%		D3B0J5              	100.00%
Bootstrap support for Q7KF27 as seed ortholog is 94%.
Bootstrap support for D3B0J5 as seed ortholog is 100%.

Group of orthologs #607. Best score 191 bits
Score difference with first non-orthologous sequence - L.major:33 P.pallidum:4

Q4QE15              	100.00%		D3B1S9              	100.00%
Q4QBU7              	7.09%		
Bootstrap support for Q4QE15 as seed ortholog is 83%.
Bootstrap support for D3B1S9 as seed ortholog is 53%.
Alternative seed ortholog is D3B2B1 (4 bits away from this cluster)

Group of orthologs #608. Best score 191 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:144

Q4Q3V7              	100.00%		D3BE81              	100.00%
                    	       		D3BCT5              	54.80%
Bootstrap support for Q4Q3V7 as seed ortholog is 99%.
Bootstrap support for D3BE81 as seed ortholog is 99%.

Group of orthologs #609. Best score 191 bits
Score difference with first non-orthologous sequence - L.major:191 P.pallidum:41

Q4Q622              	100.00%		D3BTG9              	100.00%
Bootstrap support for Q4Q622 as seed ortholog is 100%.
Bootstrap support for D3BTG9 as seed ortholog is 74%.
Alternative seed ortholog is D3BGD2 (41 bits away from this cluster)

Group of orthologs #610. Best score 191 bits
Score difference with first non-orthologous sequence - L.major:191 P.pallidum:191

Q4QFE1              	100.00%		D3BT21              	100.00%
Bootstrap support for Q4QFE1 as seed ortholog is 100%.
Bootstrap support for D3BT21 as seed ortholog is 100%.

Group of orthologs #611. Best score 190 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:105

Q4QA75              	100.00%		D3B5I3              	100.00%
                    	       		D3BFJ2              	8.02%
Bootstrap support for Q4QA75 as seed ortholog is 98%.
Bootstrap support for D3B5I3 as seed ortholog is 99%.

Group of orthologs #612. Best score 190 bits
Score difference with first non-orthologous sequence - L.major:190 P.pallidum:190

Q4Q0Z3              	100.00%		D3BIZ7              	100.00%
Bootstrap support for Q4Q0Z3 as seed ortholog is 100%.
Bootstrap support for D3BIZ7 as seed ortholog is 100%.

Group of orthologs #613. Best score 190 bits
Score difference with first non-orthologous sequence - L.major:190 P.pallidum:190

Q4QEG7              	100.00%		D3BVI2              	100.00%
Bootstrap support for Q4QEG7 as seed ortholog is 100%.
Bootstrap support for D3BVI2 as seed ortholog is 100%.

Group of orthologs #614. Best score 189 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:189

Q4Q698              	100.00%		D3BCX1              	100.00%
Q4Q699              	75.77%		D3BJJ1              	100.00%
                    	       		D3BPS6              	8.53%
Bootstrap support for Q4Q698 as seed ortholog is 99%.
Bootstrap support for D3BCX1 as seed ortholog is 100%.
Bootstrap support for D3BJJ1 as seed ortholog is 100%.

Group of orthologs #615. Best score 189 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:189

Q4QDN1              	100.00%		D3B2U1              	100.00%
Bootstrap support for Q4QDN1 as seed ortholog is 99%.
Bootstrap support for D3B2U1 as seed ortholog is 100%.

Group of orthologs #616. Best score 189 bits
Score difference with first non-orthologous sequence - L.major:189 P.pallidum:189

Q4QIS4              	100.00%		D3B913              	100.00%
Bootstrap support for Q4QIS4 as seed ortholog is 100%.
Bootstrap support for D3B913 as seed ortholog is 100%.

Group of orthologs #617. Best score 189 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:189

Q4Q1R0              	100.00%		D3BUZ6              	100.00%
Bootstrap support for Q4Q1R0 as seed ortholog is 98%.
Bootstrap support for D3BUZ6 as seed ortholog is 100%.

Group of orthologs #618. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.pallidum:188

E9AC62              	100.00%		D3AWC6              	100.00%
Bootstrap support for E9AC62 as seed ortholog is 100%.
Bootstrap support for D3AWC6 as seed ortholog is 100%.

Group of orthologs #619. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.pallidum:188

Q4QG87              	100.00%		D3B2E8              	100.00%
Bootstrap support for Q4QG87 as seed ortholog is 100%.
Bootstrap support for D3B2E8 as seed ortholog is 100%.

Group of orthologs #620. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.pallidum:188

Q4Q3T2              	100.00%		D3BK71              	100.00%
Bootstrap support for Q4Q3T2 as seed ortholog is 100%.
Bootstrap support for D3BK71 as seed ortholog is 100%.

Group of orthologs #621. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:186 P.pallidum:186

E9ADL6              	100.00%		D3AXW3              	100.00%
Bootstrap support for E9ADL6 as seed ortholog is 100%.
Bootstrap support for D3AXW3 as seed ortholog is 100%.

Group of orthologs #622. Best score 185 bits
Score difference with first non-orthologous sequence - L.major:35 P.pallidum:25

Q4QHC3              	100.00%		D3AWN3              	100.00%
                    	       		D3B0H3              	18.01%
Bootstrap support for Q4QHC3 as seed ortholog is 91%.
Bootstrap support for D3AWN3 as seed ortholog is 79%.

Group of orthologs #623. Best score 185 bits
Score difference with first non-orthologous sequence - L.major:185 P.pallidum:185

Q4Q086              	100.00%		D3B3I5              	100.00%
Bootstrap support for Q4Q086 as seed ortholog is 100%.
Bootstrap support for D3B3I5 as seed ortholog is 100%.

Group of orthologs #624. Best score 185 bits
Score difference with first non-orthologous sequence - L.major:185 P.pallidum:185

Q4Q6V0              	100.00%		D3BMZ6              	100.00%
Bootstrap support for Q4Q6V0 as seed ortholog is 100%.
Bootstrap support for D3BMZ6 as seed ortholog is 100%.

Group of orthologs #625. Best score 184 bits
Score difference with first non-orthologous sequence - L.major:25 P.pallidum:60

E9ADB8              	100.00%		D3AY23              	100.00%
                    	       		D3B428              	8.01%
Bootstrap support for E9ADB8 as seed ortholog is 52%.
Alternative seed ortholog is Q4QFK4 (25 bits away from this cluster)
Bootstrap support for D3AY23 as seed ortholog is 87%.

Group of orthologs #626. Best score 184 bits
Score difference with first non-orthologous sequence - L.major:184 P.pallidum:184

Q4Q1Y2              	100.00%		D3B1K3              	100.00%
Q4Q1Y3              	100.00%		
Bootstrap support for Q4Q1Y2 as seed ortholog is 100%.
Bootstrap support for Q4Q1Y3 as seed ortholog is 100%.
Bootstrap support for D3B1K3 as seed ortholog is 100%.

Group of orthologs #627. Best score 184 bits
Score difference with first non-orthologous sequence - L.major:184 P.pallidum:184

Q4Q9S3              	100.00%		D3B5F9              	100.00%
Bootstrap support for Q4Q9S3 as seed ortholog is 100%.
Bootstrap support for D3B5F9 as seed ortholog is 100%.

Group of orthologs #628. Best score 184 bits
Score difference with first non-orthologous sequence - L.major:184 P.pallidum:184

Q4QBK9              	100.00%		D3BHV4              	100.00%
Bootstrap support for Q4QBK9 as seed ortholog is 100%.
Bootstrap support for D3BHV4 as seed ortholog is 100%.

Group of orthologs #629. Best score 183 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:183

Q4Q7T9              	100.00%		D3BQ12              	100.00%
Bootstrap support for Q4Q7T9 as seed ortholog is 99%.
Bootstrap support for D3BQ12 as seed ortholog is 100%.

Group of orthologs #630. Best score 183 bits
Score difference with first non-orthologous sequence - L.major:183 P.pallidum:183

Q95Z86              	100.00%		D3BI80              	100.00%
Bootstrap support for Q95Z86 as seed ortholog is 100%.
Bootstrap support for D3BI80 as seed ortholog is 100%.

Group of orthologs #631. Best score 183 bits
Score difference with first non-orthologous sequence - L.major:29 P.pallidum:52

Q4QHU1              	100.00%		D3BPQ9              	100.00%
Bootstrap support for Q4QHU1 as seed ortholog is 72%.
Alternative seed ortholog is Q4Q0X4 (29 bits away from this cluster)
Bootstrap support for D3BPQ9 as seed ortholog is 91%.

Group of orthologs #632. Best score 182 bits
Score difference with first non-orthologous sequence - L.major:182 P.pallidum:78

Q4Q0F3              	100.00%		D3BB93              	100.00%
Q4Q0F2              	6.77%		
Bootstrap support for Q4Q0F3 as seed ortholog is 100%.
Bootstrap support for D3BB93 as seed ortholog is 96%.

Group of orthologs #633. Best score 182 bits
Score difference with first non-orthologous sequence - L.major:182 P.pallidum:70

Q4Q0H0              	100.00%		D3BHG8              	100.00%
                    	       		D3BS60              	6.52%
Bootstrap support for Q4Q0H0 as seed ortholog is 100%.
Bootstrap support for D3BHG8 as seed ortholog is 94%.

Group of orthologs #634. Best score 182 bits
Score difference with first non-orthologous sequence - L.major:182 P.pallidum:182

Q4Q561              	100.00%		D3B7N8              	100.00%
Bootstrap support for Q4Q561 as seed ortholog is 100%.
Bootstrap support for D3B7N8 as seed ortholog is 100%.

Group of orthologs #635. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:181 P.pallidum:181

Q4FX73              	100.00%		D3BEH6              	100.00%
Bootstrap support for Q4FX73 as seed ortholog is 100%.
Bootstrap support for D3BEH6 as seed ortholog is 100%.

Group of orthologs #636. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:181 P.pallidum:181

Q4QE06              	100.00%		D3B3A9              	100.00%
Bootstrap support for Q4QE06 as seed ortholog is 100%.
Bootstrap support for D3B3A9 as seed ortholog is 100%.

Group of orthologs #637. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:122 P.pallidum:181

Q4QJ65              	100.00%		D3B0F6              	100.00%
Bootstrap support for Q4QJ65 as seed ortholog is 99%.
Bootstrap support for D3B0F6 as seed ortholog is 100%.

Group of orthologs #638. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:49 P.pallidum:41

Q4QC33              	100.00%		D3BST6              	100.00%
Bootstrap support for Q4QC33 as seed ortholog is 71%.
Alternative seed ortholog is Q4QDK7 (49 bits away from this cluster)
Bootstrap support for D3BST6 as seed ortholog is 96%.

Group of orthologs #639. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:181 P.pallidum:181

Q4QEY9              	100.00%		D3BT31              	100.00%
Bootstrap support for Q4QEY9 as seed ortholog is 100%.
Bootstrap support for D3BT31 as seed ortholog is 100%.

Group of orthologs #640. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:181 P.pallidum:181

Q4QIT8              	100.00%		D3BR69              	100.00%
Bootstrap support for Q4QIT8 as seed ortholog is 100%.
Bootstrap support for D3BR69 as seed ortholog is 100%.

Group of orthologs #641. Best score 180 bits
Score difference with first non-orthologous sequence - L.major:99 P.pallidum:180

Q4Q8W6              	100.00%		D3B367              	100.00%
Bootstrap support for Q4Q8W6 as seed ortholog is 99%.
Bootstrap support for D3B367 as seed ortholog is 100%.

Group of orthologs #642. Best score 180 bits
Score difference with first non-orthologous sequence - L.major:22 P.pallidum:180

E9AFR7              	100.00%		D3BNY3              	100.00%
Bootstrap support for E9AFR7 as seed ortholog is 79%.
Bootstrap support for D3BNY3 as seed ortholog is 100%.

Group of orthologs #643. Best score 180 bits
Score difference with first non-orthologous sequence - L.major:58 P.pallidum:28

E9AEB9              	100.00%		D3BUT4              	100.00%
Bootstrap support for E9AEB9 as seed ortholog is 92%.
Bootstrap support for D3BUT4 as seed ortholog is 80%.

Group of orthologs #644. Best score 180 bits
Score difference with first non-orthologous sequence - L.major:180 P.pallidum:180

Q4QIP1              	100.00%		D3BV19              	100.00%
Bootstrap support for Q4QIP1 as seed ortholog is 100%.
Bootstrap support for D3BV19 as seed ortholog is 100%.

Group of orthologs #645. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:179

Q9NE83              	100.00%		D3BFQ0              	100.00%
E9AF23              	100.00%		
Bootstrap support for Q9NE83 as seed ortholog is 100%.
Bootstrap support for E9AF23 as seed ortholog is 100%.
Bootstrap support for D3BFQ0 as seed ortholog is 100%.

Group of orthologs #646. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:40

E9ACZ8              	100.00%		D3BGW7              	100.00%
Bootstrap support for E9ACZ8 as seed ortholog is 100%.
Bootstrap support for D3BGW7 as seed ortholog is 92%.

Group of orthologs #647. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:22 P.pallidum:84

Q4Q8C8              	100.00%		D3BA43              	100.00%
Bootstrap support for Q4Q8C8 as seed ortholog is 66%.
Alternative seed ortholog is Q4Q8C9 (22 bits away from this cluster)
Bootstrap support for D3BA43 as seed ortholog is 99%.

Group of orthologs #648. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:179

Q4QAZ0              	100.00%		D3BHL7              	100.00%
Bootstrap support for Q4QAZ0 as seed ortholog is 100%.
Bootstrap support for D3BHL7 as seed ortholog is 100%.

Group of orthologs #649. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:51

E9ADT5              	100.00%		D3BV74              	100.00%
Bootstrap support for E9ADT5 as seed ortholog is 100%.
Bootstrap support for D3BV74 as seed ortholog is 87%.

Group of orthologs #650. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:179 P.pallidum:129

Q4QHK9              	100.00%		D3BTD3              	100.00%
Bootstrap support for Q4QHK9 as seed ortholog is 100%.
Bootstrap support for D3BTD3 as seed ortholog is 99%.

Group of orthologs #651. Best score 178 bits
Score difference with first non-orthologous sequence - L.major:178 P.pallidum:178

Q4Q6V5              	100.00%		D3BMQ1              	100.00%
Q4QC91              	100.00%		
Bootstrap support for Q4Q6V5 as seed ortholog is 100%.
Bootstrap support for Q4QC91 as seed ortholog is 100%.
Bootstrap support for D3BMQ1 as seed ortholog is 100%.

Group of orthologs #652. Best score 177 bits
Score difference with first non-orthologous sequence - L.major:177 P.pallidum:132

Q4Q176              	100.00%		D3B0D6              	100.00%
Bootstrap support for Q4Q176 as seed ortholog is 100%.
Bootstrap support for D3B0D6 as seed ortholog is 99%.

Group of orthologs #653. Best score 177 bits
Score difference with first non-orthologous sequence - L.major:177 P.pallidum:177

Q4Q3M1              	100.00%		D3BBQ0              	100.00%
Bootstrap support for Q4Q3M1 as seed ortholog is 100%.
Bootstrap support for D3BBQ0 as seed ortholog is 100%.

Group of orthologs #654. Best score 177 bits
Score difference with first non-orthologous sequence - L.major:133 P.pallidum:177

Q4QCN5              	100.00%		D3BJY4              	100.00%
Bootstrap support for Q4QCN5 as seed ortholog is 100%.
Bootstrap support for D3BJY4 as seed ortholog is 100%.

Group of orthologs #655. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:176 P.pallidum:176

Q4QG15              	100.00%		D3BMK7              	100.00%
                    	       		D3B2D5              	41.77%
Bootstrap support for Q4QG15 as seed ortholog is 100%.
Bootstrap support for D3BMK7 as seed ortholog is 100%.

Group of orthologs #656. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:176

E9AFG4              	100.00%		D3AWL9              	100.00%
Bootstrap support for E9AFG4 as seed ortholog is 87%.
Bootstrap support for D3AWL9 as seed ortholog is 100%.

Group of orthologs #657. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:176 P.pallidum:176

E9AEP5              	100.00%		D3BCA4              	100.00%
Bootstrap support for E9AEP5 as seed ortholog is 100%.
Bootstrap support for D3BCA4 as seed ortholog is 100%.

Group of orthologs #658. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:176

E9ADA3              	100.00%		D3BG93              	100.00%
Bootstrap support for E9ADA3 as seed ortholog is 99%.
Bootstrap support for D3BG93 as seed ortholog is 100%.

Group of orthologs #659. Best score 175 bits
Score difference with first non-orthologous sequence - L.major:175 P.pallidum:175

Q4Q6S2              	100.00%		D3B6L2              	100.00%
Bootstrap support for Q4Q6S2 as seed ortholog is 100%.
Bootstrap support for D3B6L2 as seed ortholog is 100%.

Group of orthologs #660. Best score 175 bits
Score difference with first non-orthologous sequence - L.major:175 P.pallidum:175

Q4QF22              	100.00%		D3B114              	100.00%
Bootstrap support for Q4QF22 as seed ortholog is 100%.
Bootstrap support for D3B114 as seed ortholog is 100%.

Group of orthologs #661. Best score 175 bits
Score difference with first non-orthologous sequence - L.major:175 P.pallidum:175

Q4Q116              	100.00%		D3BG85              	100.00%
Bootstrap support for Q4Q116 as seed ortholog is 100%.
Bootstrap support for D3BG85 as seed ortholog is 100%.

Group of orthologs #662. Best score 175 bits
Score difference with first non-orthologous sequence - L.major:175 P.pallidum:175

Q4Q453              	100.00%		D3BH65              	100.00%
Bootstrap support for Q4Q453 as seed ortholog is 100%.
Bootstrap support for D3BH65 as seed ortholog is 100%.

Group of orthologs #663. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:46 P.pallidum:174

Q4Q669              	100.00%		D3BAF6              	100.00%
Bootstrap support for Q4Q669 as seed ortholog is 84%.
Bootstrap support for D3BAF6 as seed ortholog is 100%.

Group of orthologs #664. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:51 P.pallidum:174

E9AEU9              	100.00%		D3BLY0              	100.00%
Bootstrap support for E9AEU9 as seed ortholog is 94%.
Bootstrap support for D3BLY0 as seed ortholog is 100%.

Group of orthologs #665. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:174 P.pallidum:174

Q4Q0A5              	100.00%		D3BM11              	100.00%
Bootstrap support for Q4Q0A5 as seed ortholog is 100%.
Bootstrap support for D3BM11 as seed ortholog is 100%.

Group of orthologs #666. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:174 P.pallidum:174

Q4QAT9              	100.00%		D3BS99              	100.00%
Bootstrap support for Q4QAT9 as seed ortholog is 100%.
Bootstrap support for D3BS99 as seed ortholog is 100%.

Group of orthologs #667. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:174 P.pallidum:174

Q4QCH1              	100.00%		D3BT91              	100.00%
Bootstrap support for Q4QCH1 as seed ortholog is 100%.
Bootstrap support for D3BT91 as seed ortholog is 100%.

Group of orthologs #668. Best score 173 bits
Score difference with first non-orthologous sequence - L.major:173 P.pallidum:173

Q4QE68              	100.00%		D3AZP7              	100.00%
Bootstrap support for Q4QE68 as seed ortholog is 100%.
Bootstrap support for D3AZP7 as seed ortholog is 100%.

Group of orthologs #669. Best score 173 bits
Score difference with first non-orthologous sequence - L.major:5 P.pallidum:51

Q4QFJ2              	100.00%		D3B128              	100.00%
Bootstrap support for Q4QFJ2 as seed ortholog is 51%.
Alternative seed ortholog is Q4QFK4 (5 bits away from this cluster)
Bootstrap support for D3B128 as seed ortholog is 63%.
Alternative seed ortholog is D3BK41 (51 bits away from this cluster)

Group of orthologs #670. Best score 173 bits
Score difference with first non-orthologous sequence - L.major:173 P.pallidum:173

E9ACN5              	100.00%		D3BS90              	100.00%
Bootstrap support for E9ACN5 as seed ortholog is 100%.
Bootstrap support for D3BS90 as seed ortholog is 100%.

Group of orthologs #671. Best score 172 bits
Score difference with first non-orthologous sequence - L.major:16 P.pallidum:41

E9AEJ0              	100.00%		D3B2T9              	100.00%
Bootstrap support for E9AEJ0 as seed ortholog is 78%.
Bootstrap support for D3B2T9 as seed ortholog is 97%.

Group of orthologs #672. Best score 172 bits
Score difference with first non-orthologous sequence - L.major:11 P.pallidum:172

E9AC48              	100.00%		D3BJ85              	100.00%
Bootstrap support for E9AC48 as seed ortholog is 61%.
Alternative seed ortholog is Q4QJD4 (11 bits away from this cluster)
Bootstrap support for D3BJ85 as seed ortholog is 100%.

Group of orthologs #673. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.pallidum:171

Q4QCH3              	100.00%		D3AWD3              	100.00%
Bootstrap support for Q4QCH3 as seed ortholog is 100%.
Bootstrap support for D3AWD3 as seed ortholog is 100%.

Group of orthologs #674. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:95

Q4Q5L3              	100.00%		D3BAG5              	100.00%
Bootstrap support for Q4Q5L3 as seed ortholog is 99%.
Bootstrap support for D3BAG5 as seed ortholog is 100%.

Group of orthologs #675. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.pallidum:171

Q4QJ04              	100.00%		D3B961              	100.00%
Bootstrap support for Q4QJ04 as seed ortholog is 100%.
Bootstrap support for D3B961 as seed ortholog is 100%.

Group of orthologs #676. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.pallidum:171

Q9NF84              	100.00%		D3B8K8              	100.00%
Bootstrap support for Q9NF84 as seed ortholog is 100%.
Bootstrap support for D3B8K8 as seed ortholog is 100%.

Group of orthologs #677. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.pallidum:170

E9AFR8              	100.00%		D3BGF1              	100.00%
Q5C8V6              	14.40%		
Q4QH28              	13.82%		
Bootstrap support for E9AFR8 as seed ortholog is 100%.
Bootstrap support for D3BGF1 as seed ortholog is 100%.

Group of orthologs #678. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:29 P.pallidum:170

E9AFR9              	100.00%		D3BVF8              	100.00%
E9AFS0              	100.00%		
Bootstrap support for E9AFR9 as seed ortholog is 77%.
Bootstrap support for E9AFS0 as seed ortholog is 77%.
Bootstrap support for D3BVF8 as seed ortholog is 100%.

Group of orthologs #679. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.pallidum:170

Q4Q7F0              	100.00%		D3AYN0              	100.00%
Bootstrap support for Q4Q7F0 as seed ortholog is 100%.
Bootstrap support for D3AYN0 as seed ortholog is 100%.

Group of orthologs #680. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:120 P.pallidum:82

Q4QAB7              	100.00%		D3AYS3              	100.00%
Bootstrap support for Q4QAB7 as seed ortholog is 100%.
Bootstrap support for D3AYS3 as seed ortholog is 99%.

Group of orthologs #681. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.pallidum:170

E9ADS7              	100.00%		D3BC65              	100.00%
Bootstrap support for E9ADS7 as seed ortholog is 100%.
Bootstrap support for D3BC65 as seed ortholog is 100%.

Group of orthologs #682. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.pallidum:170

Q4Q1H9              	100.00%		D3BMA5              	100.00%
Bootstrap support for Q4Q1H9 as seed ortholog is 100%.
Bootstrap support for D3BMA5 as seed ortholog is 100%.

Group of orthologs #683. Best score 169 bits
Score difference with first non-orthologous sequence - L.major:169 P.pallidum:33

Q4Q8L3              	100.00%		D3B9G1              	100.00%
Q4QHG9              	19.40%		
Q4QHH2              	18.99%		
Q4QHH0              	18.89%		
Q4QHH1              	18.79%		
Q4Q662              	16.12%		
Bootstrap support for Q4Q8L3 as seed ortholog is 100%.
Bootstrap support for D3B9G1 as seed ortholog is 76%.

Group of orthologs #684. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.pallidum:168

Q4Q9H6              	100.00%		D3B4M4              	100.00%
Bootstrap support for Q4Q9H6 as seed ortholog is 100%.
Bootstrap support for D3B4M4 as seed ortholog is 100%.

Group of orthologs #685. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.pallidum:168

Q4QDY6              	100.00%		D3BB37              	100.00%
Bootstrap support for Q4QDY6 as seed ortholog is 100%.
Bootstrap support for D3BB37 as seed ortholog is 100%.

Group of orthologs #686. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.pallidum:167

O97209              	100.00%		D3BB01              	100.00%
Bootstrap support for O97209 as seed ortholog is 100%.
Bootstrap support for D3BB01 as seed ortholog is 100%.

Group of orthologs #687. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.pallidum:167

Q4Q9I9              	100.00%		D3B4P2              	100.00%
Bootstrap support for Q4Q9I9 as seed ortholog is 100%.
Bootstrap support for D3B4P2 as seed ortholog is 100%.

Group of orthologs #688. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.pallidum:167

Q4Q9R2              	100.00%		D3BB44              	100.00%
Bootstrap support for Q4Q9R2 as seed ortholog is 100%.
Bootstrap support for D3BB44 as seed ortholog is 100%.

Group of orthologs #689. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.pallidum:167

Q4Q3A3              	100.00%		D3BHF9              	100.00%
Bootstrap support for Q4Q3A3 as seed ortholog is 100%.
Bootstrap support for D3BHF9 as seed ortholog is 100%.

Group of orthologs #690. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.pallidum:167

Q4QBV6              	100.00%		D3BAC6              	100.00%
Bootstrap support for Q4QBV6 as seed ortholog is 100%.
Bootstrap support for D3BAC6 as seed ortholog is 100%.

Group of orthologs #691. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:94 P.pallidum:166

Q4Q9N6              	100.00%		D3B3T2              	100.00%
                    	       		D3BKY3              	16.40%
Bootstrap support for Q4Q9N6 as seed ortholog is 99%.
Bootstrap support for D3B3T2 as seed ortholog is 100%.

Group of orthologs #692. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:166 P.pallidum:166

E9ADC6              	100.00%		D3AVN8              	100.00%
Bootstrap support for E9ADC6 as seed ortholog is 100%.
Bootstrap support for D3AVN8 as seed ortholog is 100%.

Group of orthologs #693. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:166 P.pallidum:166

Q4Q1C0              	100.00%		D3B0P9              	100.00%
Bootstrap support for Q4Q1C0 as seed ortholog is 100%.
Bootstrap support for D3B0P9 as seed ortholog is 100%.

Group of orthologs #694. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:105 P.pallidum:47

Q4QC21              	100.00%		D3BCG7              	100.00%
Bootstrap support for Q4QC21 as seed ortholog is 99%.
Bootstrap support for D3BCG7 as seed ortholog is 99%.

Group of orthologs #695. Best score 165 bits
Score difference with first non-orthologous sequence - L.major:118 P.pallidum:165

Q4Q289              	100.00%		D3AZF9              	100.00%
Bootstrap support for Q4Q289 as seed ortholog is 99%.
Bootstrap support for D3AZF9 as seed ortholog is 100%.

Group of orthologs #696. Best score 165 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:7

Q4QHD6              	100.00%		D3AWT6              	100.00%
Bootstrap support for Q4QHD6 as seed ortholog is 99%.
Bootstrap support for D3AWT6 as seed ortholog is 56%.
Alternative seed ortholog is D3B1H0 (7 bits away from this cluster)

Group of orthologs #697. Best score 165 bits
Score difference with first non-orthologous sequence - L.major:165 P.pallidum:165

Q4QET4              	100.00%		D3B6R8              	100.00%
Bootstrap support for Q4QET4 as seed ortholog is 100%.
Bootstrap support for D3B6R8 as seed ortholog is 100%.

Group of orthologs #698. Best score 164 bits
Score difference with first non-orthologous sequence - L.major:164 P.pallidum:164

E9ACW8              	100.00%		D3B725              	100.00%
Bootstrap support for E9ACW8 as seed ortholog is 100%.
Bootstrap support for D3B725 as seed ortholog is 100%.

Group of orthologs #699. Best score 164 bits
Score difference with first non-orthologous sequence - L.major:164 P.pallidum:164

Q4Q8J7              	100.00%		D3BTD9              	100.00%
Bootstrap support for Q4Q8J7 as seed ortholog is 100%.
Bootstrap support for D3BTD9 as seed ortholog is 100%.

Group of orthologs #700. Best score 164 bits
Score difference with first non-orthologous sequence - L.major:164 P.pallidum:164

Q4QDB4              	100.00%		D3BR68              	100.00%
Bootstrap support for Q4QDB4 as seed ortholog is 100%.
Bootstrap support for D3BR68 as seed ortholog is 100%.

Group of orthologs #701. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:0 P.pallidum:163

Q4Q8L2              	100.00%		D3BEZ5              	100.00%
                    	       		D3BDH0              	8.33%
Bootstrap support for Q4Q8L2 as seed ortholog is 80%.
Bootstrap support for D3BEZ5 as seed ortholog is 100%.

Group of orthologs #702. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:163 P.pallidum:163

Q4Q5P2              	100.00%		D3BQU5              	100.00%
Q4QAX6              	100.00%		
Bootstrap support for Q4Q5P2 as seed ortholog is 100%.
Bootstrap support for Q4QAX6 as seed ortholog is 100%.
Bootstrap support for D3BQU5 as seed ortholog is 100%.

Group of orthologs #703. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:163 P.pallidum:163

Q4Q7R0              	100.00%		D3AY95              	100.00%
Bootstrap support for Q4Q7R0 as seed ortholog is 100%.
Bootstrap support for D3AY95 as seed ortholog is 100%.

Group of orthologs #704. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:163 P.pallidum:163

Q4QDT5              	100.00%		D3B1Z3              	100.00%
Bootstrap support for Q4QDT5 as seed ortholog is 100%.
Bootstrap support for D3B1Z3 as seed ortholog is 100%.

Group of orthologs #705. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:47 P.pallidum:163

Q9XZY9              	100.00%		D3BNI9              	100.00%
Bootstrap support for Q9XZY9 as seed ortholog is 92%.
Bootstrap support for D3BNI9 as seed ortholog is 100%.

Group of orthologs #706. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:36

Q4Q5W2              	100.00%		D3B6P7              	100.00%
Q4Q5T9              	27.82%		
Q4Q3Y9              	18.15%		
Q4Q1S4              	12.10%		
Q4QBQ2              	10.08%		
Q4Q1S3              	8.33%		
Q4Q1J2              	7.93%		
Bootstrap support for Q4Q5W2 as seed ortholog is 89%.
Bootstrap support for D3B6P7 as seed ortholog is 86%.

Group of orthologs #707. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.pallidum:162

Q4QC03              	100.00%		D3B6L1              	100.00%
Q4Q8F0              	39.20%		
Q4QBG2              	14.57%		
Bootstrap support for Q4QC03 as seed ortholog is 100%.
Bootstrap support for D3B6L1 as seed ortholog is 100%.

Group of orthologs #708. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.pallidum:162

E9AF01              	100.00%		D3B3N0              	100.00%
Bootstrap support for E9AF01 as seed ortholog is 100%.
Bootstrap support for D3B3N0 as seed ortholog is 100%.

Group of orthologs #709. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.pallidum:162

Q4QCN7              	100.00%		D3AW89              	100.00%
Bootstrap support for Q4QCN7 as seed ortholog is 100%.
Bootstrap support for D3AW89 as seed ortholog is 100%.

Group of orthologs #710. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.pallidum:162

E9ADU6              	100.00%		D3BAQ9              	100.00%
Bootstrap support for E9ADU6 as seed ortholog is 100%.
Bootstrap support for D3BAQ9 as seed ortholog is 100%.

Group of orthologs #711. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.pallidum:162

Q4QG98              	100.00%		D3BBP3              	100.00%
Bootstrap support for Q4QG98 as seed ortholog is 100%.
Bootstrap support for D3BBP3 as seed ortholog is 100%.

Group of orthologs #712. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:40

Q4Q5I6              	100.00%		D3BJU4              	100.00%
                    	       		D3BAU0              	31.93%
Bootstrap support for Q4Q5I6 as seed ortholog is 100%.
Bootstrap support for D3BJU4 as seed ortholog is 83%.

Group of orthologs #713. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:161

Q4Q127              	100.00%		D3BT42              	100.00%
                    	       		D3BT43              	86.91%
Bootstrap support for Q4Q127 as seed ortholog is 100%.
Bootstrap support for D3BT42 as seed ortholog is 100%.

Group of orthologs #714. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:87

E9ADU8              	100.00%		D3BCJ1              	100.00%
Bootstrap support for E9ADU8 as seed ortholog is 100%.
Bootstrap support for D3BCJ1 as seed ortholog is 99%.

Group of orthologs #715. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:94

Q4Q0M6              	100.00%		D3BMX0              	100.00%
Bootstrap support for Q4Q0M6 as seed ortholog is 100%.
Bootstrap support for D3BMX0 as seed ortholog is 99%.

Group of orthologs #716. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:161

Q4QC75              	100.00%		D3BG91              	100.00%
Bootstrap support for Q4QC75 as seed ortholog is 100%.
Bootstrap support for D3BG91 as seed ortholog is 100%.

Group of orthologs #717. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:119 P.pallidum:161

Q4QJ44              	100.00%		D3BEA5              	100.00%
Bootstrap support for Q4QJ44 as seed ortholog is 99%.
Bootstrap support for D3BEA5 as seed ortholog is 100%.

Group of orthologs #718. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:161

Q4QFK1              	100.00%		D3BRL5              	100.00%
Bootstrap support for Q4QFK1 as seed ortholog is 92%.
Bootstrap support for D3BRL5 as seed ortholog is 100%.

Group of orthologs #719. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:89

Q4QIK2              	100.00%		D3BQS8              	100.00%
Bootstrap support for Q4QIK2 as seed ortholog is 100%.
Bootstrap support for D3BQS8 as seed ortholog is 99%.

Group of orthologs #720. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.pallidum:161

Q4QJ63              	100.00%		D3BVI7              	100.00%
Bootstrap support for Q4QJ63 as seed ortholog is 100%.
Bootstrap support for D3BVI7 as seed ortholog is 100%.

Group of orthologs #721. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:97

Q4QBD8              	100.00%		D3BV73              	100.00%
                    	       		D3B8N8              	47.49%
                    	       		D3BG57              	37.99%
Bootstrap support for Q4QBD8 as seed ortholog is 99%.
Bootstrap support for D3BV73 as seed ortholog is 99%.

Group of orthologs #722. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:160 P.pallidum:78

Q4Q3Q8              	100.00%		D3B9K9              	100.00%
Bootstrap support for Q4Q3Q8 as seed ortholog is 100%.
Bootstrap support for D3B9K9 as seed ortholog is 99%.

Group of orthologs #723. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:160 P.pallidum:160

Q4QGY9              	100.00%		D3BSM2              	100.00%
Bootstrap support for Q4QGY9 as seed ortholog is 100%.
Bootstrap support for D3BSM2 as seed ortholog is 100%.

Group of orthologs #724. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:159 P.pallidum:159

E9AFI2              	100.00%		D3BAX5              	100.00%
E9AFI7              	17.04%		D3BIJ6              	28.81%
Bootstrap support for E9AFI2 as seed ortholog is 100%.
Bootstrap support for D3BAX5 as seed ortholog is 100%.

Group of orthologs #725. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:159 P.pallidum:159

Q4QHV2              	100.00%		D3B0E0              	100.00%
Bootstrap support for Q4QHV2 as seed ortholog is 100%.
Bootstrap support for D3B0E0 as seed ortholog is 100%.

Group of orthologs #726. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:159 P.pallidum:159

Q4QIH4              	100.00%		D3B1A8              	100.00%
Bootstrap support for Q4QIH4 as seed ortholog is 100%.
Bootstrap support for D3B1A8 as seed ortholog is 100%.

Group of orthologs #727. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:159 P.pallidum:159

Q4QF26              	100.00%		D3B4U3              	100.00%
Bootstrap support for Q4QF26 as seed ortholog is 100%.
Bootstrap support for D3B4U3 as seed ortholog is 100%.

Group of orthologs #728. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:159 P.pallidum:159

Q4QCG1              	100.00%		D3BHF0              	100.00%
Bootstrap support for Q4QCG1 as seed ortholog is 100%.
Bootstrap support for D3BHF0 as seed ortholog is 100%.

Group of orthologs #729. Best score 158 bits
Score difference with first non-orthologous sequence - L.major:158 P.pallidum:88

Q4Q0K9              	100.00%		D3BL22              	100.00%
Q4Q0L0              	11.09%		
Q4Q0L1              	8.69%		
Bootstrap support for Q4Q0K9 as seed ortholog is 100%.
Bootstrap support for D3BL22 as seed ortholog is 99%.

Group of orthologs #730. Best score 158 bits
Score difference with first non-orthologous sequence - L.major:158 P.pallidum:158

E9AFK0              	100.00%		D3BTU3              	100.00%
Bootstrap support for E9AFK0 as seed ortholog is 100%.
Bootstrap support for D3BTU3 as seed ortholog is 100%.

Group of orthologs #731. Best score 158 bits
Score difference with first non-orthologous sequence - L.major:158 P.pallidum:158

Q4Q5I7              	100.00%		D3BTM3              	100.00%
Bootstrap support for Q4Q5I7 as seed ortholog is 100%.
Bootstrap support for D3BTM3 as seed ortholog is 100%.

Group of orthologs #732. Best score 157 bits
Score difference with first non-orthologous sequence - L.major:157 P.pallidum:61

Q4Q3F0              	100.00%		D3BFN8              	100.00%
Bootstrap support for Q4Q3F0 as seed ortholog is 100%.
Bootstrap support for D3BFN8 as seed ortholog is 72%.
Alternative seed ortholog is D3BNW4 (61 bits away from this cluster)

Group of orthologs #733. Best score 157 bits
Score difference with first non-orthologous sequence - L.major:46 P.pallidum:157

Q4Q0M4              	100.00%		D3BQN4              	100.00%
Bootstrap support for Q4Q0M4 as seed ortholog is 88%.
Bootstrap support for D3BQN4 as seed ortholog is 100%.

Group of orthologs #734. Best score 157 bits
Score difference with first non-orthologous sequence - L.major:85 P.pallidum:104

Q4Q7J8              	100.00%		D3BUR4              	100.00%
Bootstrap support for Q4Q7J8 as seed ortholog is 98%.
Bootstrap support for D3BUR4 as seed ortholog is 99%.

Group of orthologs #735. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:156 P.pallidum:156

Q4Q791              	100.00%		D3B2U9              	100.00%
Bootstrap support for Q4Q791 as seed ortholog is 100%.
Bootstrap support for D3B2U9 as seed ortholog is 100%.

Group of orthologs #736. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:156 P.pallidum:156

Q4Q055              	100.00%		D3BBM5              	100.00%
Bootstrap support for Q4Q055 as seed ortholog is 100%.
Bootstrap support for D3BBM5 as seed ortholog is 100%.

Group of orthologs #737. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:156

Q4Q0X5              	100.00%		D3BGP9              	100.00%
Bootstrap support for Q4Q0X5 as seed ortholog is 85%.
Bootstrap support for D3BGP9 as seed ortholog is 100%.

Group of orthologs #738. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:98 P.pallidum:156

Q4Q3H7              	100.00%		D3BRD6              	100.00%
Bootstrap support for Q4Q3H7 as seed ortholog is 96%.
Bootstrap support for D3BRD6 as seed ortholog is 100%.

Group of orthologs #739. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:37 P.pallidum:156

Q4QDY4              	100.00%		D3BRK5              	100.00%
Bootstrap support for Q4QDY4 as seed ortholog is 89%.
Bootstrap support for D3BRK5 as seed ortholog is 100%.

Group of orthologs #740. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:156

Q4QFA8              	100.00%		D3BVJ7              	100.00%
Bootstrap support for Q4QFA8 as seed ortholog is 98%.
Bootstrap support for D3BVJ7 as seed ortholog is 100%.

Group of orthologs #741. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:99 P.pallidum:60

Q4QBT6              	100.00%		D3B0N1              	100.00%
                    	       		D3BFJ1              	16.48%
Bootstrap support for Q4QBT6 as seed ortholog is 99%.
Bootstrap support for D3B0N1 as seed ortholog is 97%.

Group of orthologs #742. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:13 P.pallidum:155

Q9U1E5              	100.00%		D3BAI4              	100.00%
                    	       		D3B1J5              	10.03%
Bootstrap support for Q9U1E5 as seed ortholog is 62%.
Alternative seed ortholog is E9ADA6 (13 bits away from this cluster)
Bootstrap support for D3BAI4 as seed ortholog is 100%.

Group of orthologs #743. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.pallidum:155

Q4Q4U0              	100.00%		D3AX20              	100.00%
Bootstrap support for Q4Q4U0 as seed ortholog is 100%.
Bootstrap support for D3AX20 as seed ortholog is 100%.

Group of orthologs #744. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.pallidum:155

Q4Q978              	100.00%		D3AYA9              	100.00%
Bootstrap support for Q4Q978 as seed ortholog is 100%.
Bootstrap support for D3AYA9 as seed ortholog is 100%.

Group of orthologs #745. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.pallidum:155

Q4Q1G0              	100.00%		D3B885              	100.00%
Bootstrap support for Q4Q1G0 as seed ortholog is 100%.
Bootstrap support for D3B885 as seed ortholog is 100%.

Group of orthologs #746. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.pallidum:155

Q4QA79              	100.00%		D3B6W0              	100.00%
Bootstrap support for Q4QA79 as seed ortholog is 100%.
Bootstrap support for D3B6W0 as seed ortholog is 100%.

Group of orthologs #747. Best score 154 bits
Score difference with first non-orthologous sequence - L.major:105 P.pallidum:69

E9ACB4              	100.00%		D3B850              	100.00%
                    	       		D3AXD1              	40.74%
Bootstrap support for E9ACB4 as seed ortholog is 100%.
Bootstrap support for D3B850 as seed ortholog is 99%.

Group of orthologs #748. Best score 154 bits
Score difference with first non-orthologous sequence - L.major:52 P.pallidum:39

Q4QCH5              	100.00%		D3AVU2              	100.00%
Bootstrap support for Q4QCH5 as seed ortholog is 90%.
Bootstrap support for D3AVU2 as seed ortholog is 90%.

Group of orthologs #749. Best score 154 bits
Score difference with first non-orthologous sequence - L.major:154 P.pallidum:55

Q4Q7P3              	100.00%		D3B6G4              	100.00%
Bootstrap support for Q4Q7P3 as seed ortholog is 100%.
Bootstrap support for D3B6G4 as seed ortholog is 87%.

Group of orthologs #750. Best score 154 bits
Score difference with first non-orthologous sequence - L.major:3 P.pallidum:27

Q4QGD2              	100.00%		D3BBG2              	100.00%
Bootstrap support for Q4QGD2 as seed ortholog is 54%.
Alternative seed ortholog is Q4QDS9 (3 bits away from this cluster)
Bootstrap support for D3BBG2 as seed ortholog is 85%.

Group of orthologs #751. Best score 154 bits
Score difference with first non-orthologous sequence - L.major:154 P.pallidum:154

Q4QBL3              	100.00%		D3BUS8              	100.00%
Bootstrap support for Q4QBL3 as seed ortholog is 100%.
Bootstrap support for D3BUS8 as seed ortholog is 100%.

Group of orthologs #752. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:153

Q4Q810              	100.00%		D3BA25              	100.00%
Q4QH47              	6.45%		D3B6C3              	7.36%
Q4QH48              	6.22%		
Bootstrap support for Q4Q810 as seed ortholog is 100%.
Bootstrap support for D3BA25 as seed ortholog is 100%.

Group of orthologs #753. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:153

Q4Q290              	100.00%		D3AW88              	100.00%
Q4Q2A8              	100.00%		
Bootstrap support for Q4Q290 as seed ortholog is 100%.
Bootstrap support for Q4Q2A8 as seed ortholog is 100%.
Bootstrap support for D3AW88 as seed ortholog is 100%.

Group of orthologs #754. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:153

Q4Q3B9              	100.00%		D3B4A0              	100.00%
Q4QFG2              	100.00%		
Bootstrap support for Q4Q3B9 as seed ortholog is 100%.
Bootstrap support for Q4QFG2 as seed ortholog is 100%.
Bootstrap support for D3B4A0 as seed ortholog is 100%.

Group of orthologs #755. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:153

Q4Q923              	100.00%		D3BD72              	100.00%
Q4Q925              	100.00%		
Bootstrap support for Q4Q923 as seed ortholog is 100%.
Bootstrap support for Q4Q925 as seed ortholog is 100%.
Bootstrap support for D3BD72 as seed ortholog is 100%.

Group of orthologs #756. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:65 P.pallidum:153

O97196              	100.00%		D3B7M3              	100.00%
Bootstrap support for O97196 as seed ortholog is 98%.
Bootstrap support for D3B7M3 as seed ortholog is 100%.

Group of orthologs #757. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:153

Q4QEV0              	100.00%		D3B3C0              	100.00%
Bootstrap support for Q4QEV0 as seed ortholog is 100%.
Bootstrap support for D3B3C0 as seed ortholog is 100%.

Group of orthologs #758. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:76

Q4Q174              	100.00%		D3BHH6              	100.00%
Bootstrap support for Q4Q174 as seed ortholog is 100%.
Bootstrap support for D3BHH6 as seed ortholog is 99%.

Group of orthologs #759. Best score 153 bits
Score difference with first non-orthologous sequence - L.major:153 P.pallidum:153

E9AFZ6              	100.00%		D3BLE5              	100.00%
Bootstrap support for E9AFZ6 as seed ortholog is 100%.
Bootstrap support for D3BLE5 as seed ortholog is 100%.

Group of orthologs #760. Best score 152 bits
Score difference with first non-orthologous sequence - L.major:152 P.pallidum:84

Q4Q1B7              	100.00%		D3BKA2              	100.00%
Bootstrap support for Q4Q1B7 as seed ortholog is 100%.
Bootstrap support for D3BKA2 as seed ortholog is 99%.

Group of orthologs #761. Best score 152 bits
Score difference with first non-orthologous sequence - L.major:14 P.pallidum:41

Q4Q2W7              	100.00%		D3BPE3              	100.00%
Bootstrap support for Q4Q2W7 as seed ortholog is 76%.
Bootstrap support for D3BPE3 as seed ortholog is 99%.

Group of orthologs #762. Best score 152 bits
Score difference with first non-orthologous sequence - L.major:152 P.pallidum:152

Q4QFY3              	100.00%		D3BDG0              	100.00%
Bootstrap support for Q4QFY3 as seed ortholog is 100%.
Bootstrap support for D3BDG0 as seed ortholog is 100%.

Group of orthologs #763. Best score 152 bits
Score difference with first non-orthologous sequence - L.major:152 P.pallidum:152

Q4QGD8              	100.00%		D3BUZ2              	100.00%
Bootstrap support for Q4QGD8 as seed ortholog is 100%.
Bootstrap support for D3BUZ2 as seed ortholog is 100%.

Group of orthologs #764. Best score 151 bits
Score difference with first non-orthologous sequence - L.major:151 P.pallidum:151

Q4Q0C1              	100.00%		D3B6N8              	100.00%
Bootstrap support for Q4Q0C1 as seed ortholog is 100%.
Bootstrap support for D3B6N8 as seed ortholog is 100%.

Group of orthologs #765. Best score 151 bits
Score difference with first non-orthologous sequence - L.major:73 P.pallidum:151

Q4Q9H2              	100.00%		D3B864              	100.00%
Bootstrap support for Q4Q9H2 as seed ortholog is 99%.
Bootstrap support for D3B864 as seed ortholog is 100%.

Group of orthologs #766. Best score 151 bits
Score difference with first non-orthologous sequence - L.major:27 P.pallidum:69

Q4QCJ2              	100.00%		D3BFQ8              	100.00%
Bootstrap support for Q4QCJ2 as seed ortholog is 70%.
Alternative seed ortholog is Q4QD95 (27 bits away from this cluster)
Bootstrap support for D3BFQ8 as seed ortholog is 94%.

Group of orthologs #767. Best score 151 bits
Score difference with first non-orthologous sequence - L.major:151 P.pallidum:151

Q4QAE1              	100.00%		D3BPG0              	100.00%
Bootstrap support for Q4QAE1 as seed ortholog is 100%.
Bootstrap support for D3BPG0 as seed ortholog is 100%.

Group of orthologs #768. Best score 150 bits
Score difference with first non-orthologous sequence - L.major:150 P.pallidum:150

E9AEA9              	100.00%		D3AW01              	100.00%
E9AEA8              	98.29%		
Bootstrap support for E9AEA9 as seed ortholog is 100%.
Bootstrap support for D3AW01 as seed ortholog is 100%.

Group of orthologs #769. Best score 150 bits
Score difference with first non-orthologous sequence - L.major:150 P.pallidum:150

Q4Q431              	100.00%		D3BN51              	100.00%
E9AFJ2              	14.06%		
Bootstrap support for Q4Q431 as seed ortholog is 100%.
Bootstrap support for D3BN51 as seed ortholog is 100%.

Group of orthologs #770. Best score 150 bits
Score difference with first non-orthologous sequence - L.major:26 P.pallidum:150

Q4Q937              	100.00%		D3B895              	100.00%
Bootstrap support for Q4Q937 as seed ortholog is 80%.
Bootstrap support for D3B895 as seed ortholog is 100%.

Group of orthologs #771. Best score 150 bits
Score difference with first non-orthologous sequence - L.major:150 P.pallidum:150

Q4Q7J3              	100.00%		D3BKH0              	100.00%
Bootstrap support for Q4Q7J3 as seed ortholog is 100%.
Bootstrap support for D3BKH0 as seed ortholog is 100%.

Group of orthologs #772. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:149

Q4Q9G0              	100.00%		D3BV36              	100.00%
                    	       		D3B2K8              	32.81%
Bootstrap support for Q4Q9G0 as seed ortholog is 100%.
Bootstrap support for D3BV36 as seed ortholog is 100%.

Group of orthologs #773. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:149

Q4QEX4              	100.00%		D3BTW0              	100.00%
Q4Q2H9              	97.73%		
Bootstrap support for Q4QEX4 as seed ortholog is 100%.
Bootstrap support for D3BTW0 as seed ortholog is 100%.

Group of orthologs #774. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:149

Q4QGC8              	100.00%		D3B439              	100.00%
Bootstrap support for Q4QGC8 as seed ortholog is 99%.
Bootstrap support for D3B439 as seed ortholog is 100%.

Group of orthologs #775. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:149

E9ACE0              	100.00%		D3BV59              	100.00%
Bootstrap support for E9ACE0 as seed ortholog is 100%.
Bootstrap support for D3BV59 as seed ortholog is 100%.

Group of orthologs #776. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:49

Q4QII6              	100.00%		D3BHT1              	100.00%
Bootstrap support for Q4QII6 as seed ortholog is 100%.
Bootstrap support for D3BHT1 as seed ortholog is 98%.

Group of orthologs #777. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.pallidum:149

Q4QE50              	100.00%		D3BM60              	100.00%
Bootstrap support for Q4QE50 as seed ortholog is 100%.
Bootstrap support for D3BM60 as seed ortholog is 100%.

Group of orthologs #778. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:78 P.pallidum:149

Q4QHW0              	100.00%		D3BM84              	100.00%
Bootstrap support for Q4QHW0 as seed ortholog is 94%.
Bootstrap support for D3BM84 as seed ortholog is 100%.

Group of orthologs #779. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:40 P.pallidum:149

Q4QIJ9              	100.00%		D3BVD2              	100.00%
Bootstrap support for Q4QIJ9 as seed ortholog is 72%.
Alternative seed ortholog is Q4Q3B1 (40 bits away from this cluster)
Bootstrap support for D3BVD2 as seed ortholog is 100%.

Group of orthologs #780. Best score 148 bits
Score difference with first non-orthologous sequence - L.major:8 P.pallidum:148

Q4QI76              	100.00%		D3B9N2              	100.00%
                    	       		D3BM92              	16.70%
                    	       		D3BBV0              	13.73%
                    	       		D3BAM1              	12.50%
Bootstrap support for Q4QI76 as seed ortholog is 71%.
Alternative seed ortholog is Q4QFK4 (8 bits away from this cluster)
Bootstrap support for D3B9N2 as seed ortholog is 100%.

Group of orthologs #781. Best score 148 bits
Score difference with first non-orthologous sequence - L.major:148 P.pallidum:148

Q4QBV0              	100.00%		D3B437              	100.00%
Bootstrap support for Q4QBV0 as seed ortholog is 100%.
Bootstrap support for D3B437 as seed ortholog is 100%.

Group of orthologs #782. Best score 148 bits
Score difference with first non-orthologous sequence - L.major:148 P.pallidum:148

E9AFI6              	100.00%		D3BKX3              	100.00%
Bootstrap support for E9AFI6 as seed ortholog is 100%.
Bootstrap support for D3BKX3 as seed ortholog is 100%.

Group of orthologs #783. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.pallidum:147

Q4Q5Q9              	100.00%		D3BHE2              	100.00%
                    	       		D3BCK5              	12.16%
Bootstrap support for Q4Q5Q9 as seed ortholog is 100%.
Bootstrap support for D3BHE2 as seed ortholog is 100%.

Group of orthologs #784. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.pallidum:147

Q4QEZ5              	100.00%		D3BIR6              	100.00%
Q4QEZ7              	33.18%		
Bootstrap support for Q4QEZ5 as seed ortholog is 100%.
Bootstrap support for D3BIR6 as seed ortholog is 100%.

Group of orthologs #785. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.pallidum:147

E9AEN3              	100.00%		D3B7S7              	100.00%
Bootstrap support for E9AEN3 as seed ortholog is 100%.
Bootstrap support for D3B7S7 as seed ortholog is 100%.

Group of orthologs #786. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.pallidum:147

Q4Q6A0              	100.00%		D3BAG9              	100.00%
Bootstrap support for Q4Q6A0 as seed ortholog is 100%.
Bootstrap support for D3BAG9 as seed ortholog is 100%.

Group of orthologs #787. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.pallidum:53

Q4Q3K8              	100.00%		D3BEA8              	100.00%
Bootstrap support for Q4Q3K8 as seed ortholog is 100%.
Bootstrap support for D3BEA8 as seed ortholog is 96%.

Group of orthologs #788. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:146

Q4QAM2              	100.00%		D3BLH1              	100.00%
                    	       		D3B650              	12.57%
                    	       		D3B3W3              	10.95%
                    	       		D3AXZ1              	7.85%
                    	       		D3AWA0              	6.63%
                    	       		D3B5Q6              	6.53%
Bootstrap support for Q4QAM2 as seed ortholog is 100%.
Bootstrap support for D3BLH1 as seed ortholog is 100%.

Group of orthologs #789. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:146

Q66NE2              	100.00%		D3BEW0              	100.00%
Q4Q3C1              	54.68%		
Bootstrap support for Q66NE2 as seed ortholog is 100%.
Bootstrap support for D3BEW0 as seed ortholog is 100%.

Group of orthologs #790. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:146

Q4Q7N6              	100.00%		D3AYL4              	100.00%
Bootstrap support for Q4Q7N6 as seed ortholog is 100%.
Bootstrap support for D3AYL4 as seed ortholog is 100%.

Group of orthologs #791. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:70 P.pallidum:67

E9AEE0              	100.00%		D3BAH5              	100.00%
Bootstrap support for E9AEE0 as seed ortholog is 97%.
Bootstrap support for D3BAH5 as seed ortholog is 97%.

Group of orthologs #792. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:146

Q4Q359              	100.00%		D3B716              	100.00%
Bootstrap support for Q4Q359 as seed ortholog is 100%.
Bootstrap support for D3B716 as seed ortholog is 100%.

Group of orthologs #793. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:146

Q4QGS7              	100.00%		D3B2U7              	100.00%
Bootstrap support for Q4QGS7 as seed ortholog is 100%.
Bootstrap support for D3B2U7 as seed ortholog is 100%.

Group of orthologs #794. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:54

Q4Q7H9              	100.00%		D3BBZ9              	100.00%
Bootstrap support for Q4Q7H9 as seed ortholog is 100%.
Bootstrap support for D3BBZ9 as seed ortholog is 97%.

Group of orthologs #795. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.pallidum:87

Q86MW5              	100.00%		D3BN10              	100.00%
Bootstrap support for Q86MW5 as seed ortholog is 100%.
Bootstrap support for D3BN10 as seed ortholog is 99%.

Group of orthologs #796. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:44 P.pallidum:91

Q4QGS1              	100.00%		D3BU79              	100.00%
Bootstrap support for Q4QGS1 as seed ortholog is 84%.
Bootstrap support for D3BU79 as seed ortholog is 99%.

Group of orthologs #797. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:11 P.pallidum:145

Q4QHB5              	100.00%		D3B633              	100.00%
Q4QEV9              	99.07%		D3B6K9              	76.27%
                    	       		D3BUT3              	56.78%
                    	       		D3BPL9              	33.05%
Bootstrap support for Q4QHB5 as seed ortholog is 67%.
Alternative seed ortholog is Q4QDF8 (11 bits away from this cluster)
Bootstrap support for D3B633 as seed ortholog is 100%.

Group of orthologs #798. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:145 P.pallidum:58

Q4Q615              	100.00%		D3B570              	100.00%
                    	       		D3B562              	34.07%
                    	       		D3BUM1              	26.21%
                    	       		D3BPN3              	11.09%
Bootstrap support for Q4Q615 as seed ortholog is 100%.
Bootstrap support for D3B570 as seed ortholog is 92%.

Group of orthologs #799. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:145 P.pallidum:145

Q4Q833              	100.00%		D3AVQ5              	100.00%
Bootstrap support for Q4Q833 as seed ortholog is 100%.
Bootstrap support for D3AVQ5 as seed ortholog is 100%.

Group of orthologs #800. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:145 P.pallidum:145

Q4QAC5              	100.00%		D3AVM9              	100.00%
Bootstrap support for Q4QAC5 as seed ortholog is 100%.
Bootstrap support for D3AVM9 as seed ortholog is 100%.

Group of orthologs #801. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:145 P.pallidum:145

Q4Q5H7              	100.00%		D3B465              	100.00%
Bootstrap support for Q4Q5H7 as seed ortholog is 100%.
Bootstrap support for D3B465 as seed ortholog is 100%.

Group of orthologs #802. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:145 P.pallidum:145

Q4QA21              	100.00%		D3BPP6              	100.00%
Bootstrap support for Q4QA21 as seed ortholog is 100%.
Bootstrap support for D3BPP6 as seed ortholog is 100%.

Group of orthologs #803. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

E9ACP3              	100.00%		D3AZF5              	100.00%
Bootstrap support for E9ACP3 as seed ortholog is 100%.
Bootstrap support for D3AZF5 as seed ortholog is 100%.

Group of orthologs #804. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

Q4Q4L0              	100.00%		D3B0C3              	100.00%
Bootstrap support for Q4Q4L0 as seed ortholog is 100%.
Bootstrap support for D3B0C3 as seed ortholog is 100%.

Group of orthologs #805. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:68

Q4Q4L7              	100.00%		D3B5N8              	100.00%
Bootstrap support for Q4Q4L7 as seed ortholog is 100%.
Bootstrap support for D3B5N8 as seed ortholog is 93%.

Group of orthologs #806. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

Q4Q0F8              	100.00%		D3BC43              	100.00%
Bootstrap support for Q4Q0F8 as seed ortholog is 100%.
Bootstrap support for D3BC43 as seed ortholog is 100%.

Group of orthologs #807. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

E9ADG9              	100.00%		D3BIR5              	100.00%
Bootstrap support for E9ADG9 as seed ortholog is 100%.
Bootstrap support for D3BIR5 as seed ortholog is 100%.

Group of orthologs #808. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

Q4Q9J0              	100.00%		D3BC68              	100.00%
Bootstrap support for Q4Q9J0 as seed ortholog is 100%.
Bootstrap support for D3BC68 as seed ortholog is 100%.

Group of orthologs #809. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

E9AD68              	100.00%		D3BPC0              	100.00%
Bootstrap support for E9AD68 as seed ortholog is 100%.
Bootstrap support for D3BPC0 as seed ortholog is 100%.

Group of orthologs #810. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

Q4QBL1              	100.00%		D3BCC1              	100.00%
Bootstrap support for Q4QBL1 as seed ortholog is 100%.
Bootstrap support for D3BCC1 as seed ortholog is 100%.

Group of orthologs #811. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

Q4Q9A5              	100.00%		D3BHJ3              	100.00%
Bootstrap support for Q4Q9A5 as seed ortholog is 100%.
Bootstrap support for D3BHJ3 as seed ortholog is 100%.

Group of orthologs #812. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:144 P.pallidum:144

Q4Q7S5              	100.00%		D3BLJ3              	100.00%
Bootstrap support for Q4Q7S5 as seed ortholog is 100%.
Bootstrap support for D3BLJ3 as seed ortholog is 100%.

Group of orthologs #813. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:77

Q9U1D3              	100.00%		D3BJW0              	100.00%
Bootstrap support for Q9U1D3 as seed ortholog is 98%.
Bootstrap support for D3BJW0 as seed ortholog is 99%.

Group of orthologs #814. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:143

E9AFN3              	100.00%		D3AVV1              	100.00%
Bootstrap support for E9AFN3 as seed ortholog is 100%.
Bootstrap support for D3AVV1 as seed ortholog is 100%.

Group of orthologs #815. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:91

Q4Q0Y6              	100.00%		D3B1F9              	100.00%
Bootstrap support for Q4Q0Y6 as seed ortholog is 100%.
Bootstrap support for D3B1F9 as seed ortholog is 99%.

Group of orthologs #816. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:143

Q4Q4J0              	100.00%		D3B5S9              	100.00%
Bootstrap support for Q4Q4J0 as seed ortholog is 100%.
Bootstrap support for D3B5S9 as seed ortholog is 100%.

Group of orthologs #817. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:76

Q4Q177              	100.00%		D3B9I0              	100.00%
Bootstrap support for Q4Q177 as seed ortholog is 100%.
Bootstrap support for D3B9I0 as seed ortholog is 99%.

Group of orthologs #818. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:143

Q4QDF5              	100.00%		D3B3A4              	100.00%
Bootstrap support for Q4QDF5 as seed ortholog is 100%.
Bootstrap support for D3B3A4 as seed ortholog is 100%.

Group of orthologs #819. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:143

Q4QJ96              	100.00%		D3B9F1              	100.00%
Bootstrap support for Q4QJ96 as seed ortholog is 100%.
Bootstrap support for D3B9F1 as seed ortholog is 100%.

Group of orthologs #820. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.pallidum:143

Q4Q824              	100.00%		D3BPL5              	100.00%
Bootstrap support for Q4Q824 as seed ortholog is 100%.
Bootstrap support for D3BPL5 as seed ortholog is 100%.

Group of orthologs #821. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.pallidum:142

Q4Q3S1              	100.00%		D3B0B4              	100.00%
Bootstrap support for Q4Q3S1 as seed ortholog is 100%.
Bootstrap support for D3B0B4 as seed ortholog is 100%.

Group of orthologs #822. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.pallidum:142

Q4QA38              	100.00%		D3AZX6              	100.00%
Bootstrap support for Q4QA38 as seed ortholog is 100%.
Bootstrap support for D3AZX6 as seed ortholog is 100%.

Group of orthologs #823. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.pallidum:70

Q4Q632              	100.00%		D3BN57              	100.00%
Bootstrap support for Q4Q632 as seed ortholog is 100%.
Bootstrap support for D3BN57 as seed ortholog is 99%.

Group of orthologs #824. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.pallidum:142

Q4QFP4              	100.00%		D3BK79              	100.00%
Bootstrap support for Q4QFP4 as seed ortholog is 100%.
Bootstrap support for D3BK79 as seed ortholog is 100%.

Group of orthologs #825. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.pallidum:88

Q4QH09              	100.00%		D3BT20              	100.00%
Bootstrap support for Q4QH09 as seed ortholog is 100%.
Bootstrap support for D3BT20 as seed ortholog is 99%.

Group of orthologs #826. Best score 141 bits
Score difference with first non-orthologous sequence - L.major:141 P.pallidum:141

Q4Q8J8              	100.00%		D3B3R7              	100.00%
Bootstrap support for Q4Q8J8 as seed ortholog is 100%.
Bootstrap support for D3B3R7 as seed ortholog is 100%.

Group of orthologs #827. Best score 141 bits
Score difference with first non-orthologous sequence - L.major:141 P.pallidum:141

Q4Q9U6              	100.00%		D3B5G2              	100.00%
Bootstrap support for Q4Q9U6 as seed ortholog is 100%.
Bootstrap support for D3B5G2 as seed ortholog is 100%.

Group of orthologs #828. Best score 141 bits
Score difference with first non-orthologous sequence - L.major:55 P.pallidum:141

Q4QCL6              	100.00%		D3BGC7              	100.00%
Bootstrap support for Q4QCL6 as seed ortholog is 99%.
Bootstrap support for D3BGC7 as seed ortholog is 100%.

Group of orthologs #829. Best score 141 bits
Score difference with first non-orthologous sequence - L.major:141 P.pallidum:141

Q4Q7M2              	100.00%		D3BTD2              	100.00%
Bootstrap support for Q4Q7M2 as seed ortholog is 100%.
Bootstrap support for D3BTD2 as seed ortholog is 100%.

Group of orthologs #830. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:2

E9ACW7              	100.00%		D3AVR4              	100.00%
                    	       		D3B8N7              	6.92%
                    	       		D3BN50              	5.15%
Bootstrap support for E9ACW7 as seed ortholog is 100%.
Bootstrap support for D3AVR4 as seed ortholog is 47%.
Alternative seed ortholog is D3BSH3 (2 bits away from this cluster)

Group of orthologs #831. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:36 P.pallidum:139

Q4QE05              	100.00%		D3BN31              	100.00%
                    	       		D3BN32              	48.93%
                    	       		D3B294              	35.84%
Bootstrap support for Q4QE05 as seed ortholog is 72%.
Alternative seed ortholog is Q4Q765 (36 bits away from this cluster)
Bootstrap support for D3BN31 as seed ortholog is 100%.

Group of orthologs #832. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:31 P.pallidum:139

Q4Q5G6              	100.00%		D3B6N1              	100.00%
Bootstrap support for Q4Q5G6 as seed ortholog is 82%.
Bootstrap support for D3B6N1 as seed ortholog is 100%.

Group of orthologs #833. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:139

Q4Q246              	100.00%		D3BAH6              	100.00%
Bootstrap support for Q4Q246 as seed ortholog is 99%.
Bootstrap support for D3BAH6 as seed ortholog is 100%.

Group of orthologs #834. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:139

Q4Q1Q3              	100.00%		D3BEN2              	100.00%
Bootstrap support for Q4Q1Q3 as seed ortholog is 100%.
Bootstrap support for D3BEN2 as seed ortholog is 100%.

Group of orthologs #835. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:29

Q4QEE5              	100.00%		D3B3D7              	100.00%
Bootstrap support for Q4QEE5 as seed ortholog is 100%.
Bootstrap support for D3B3D7 as seed ortholog is 81%.

Group of orthologs #836. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:139

Q4Q5G2              	100.00%		D3BHP3              	100.00%
Bootstrap support for Q4Q5G2 as seed ortholog is 100%.
Bootstrap support for D3BHP3 as seed ortholog is 100%.

Group of orthologs #837. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:67

Q4Q1A2              	100.00%		D3BM05              	100.00%
Bootstrap support for Q4Q1A2 as seed ortholog is 99%.
Bootstrap support for D3BM05 as seed ortholog is 99%.

Group of orthologs #838. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:139

Q4Q720              	100.00%		D3BQ40              	100.00%
Bootstrap support for Q4Q720 as seed ortholog is 100%.
Bootstrap support for D3BQ40 as seed ortholog is 100%.

Group of orthologs #839. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.pallidum:25

Q4Q6R9              	100.00%		D3BTX2              	100.00%
Bootstrap support for Q4Q6R9 as seed ortholog is 100%.
Bootstrap support for D3BTX2 as seed ortholog is 68%.
Alternative seed ortholog is D3B1Z5 (25 bits away from this cluster)

Group of orthologs #840. Best score 138 bits
Score difference with first non-orthologous sequence - L.major:138 P.pallidum:138

Q4QA94              	100.00%		D3AXF9              	100.00%
Bootstrap support for Q4QA94 as seed ortholog is 100%.
Bootstrap support for D3AXF9 as seed ortholog is 100%.

Group of orthologs #841. Best score 138 bits
Score difference with first non-orthologous sequence - L.major:138 P.pallidum:138

Q4QJ81              	100.00%		D3B763              	100.00%
Bootstrap support for Q4QJ81 as seed ortholog is 100%.
Bootstrap support for D3B763 as seed ortholog is 100%.

Group of orthologs #842. Best score 138 bits
Score difference with first non-orthologous sequence - L.major:28 P.pallidum:138

Q4Q2D8              	100.00%		D3BTD4              	100.00%
Bootstrap support for Q4Q2D8 as seed ortholog is 92%.
Bootstrap support for D3BTD4 as seed ortholog is 100%.

Group of orthologs #843. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:137 P.pallidum:137

Q4Q475              	100.00%		D3BD45              	100.00%
Q4QDP7              	5.71%		
Bootstrap support for Q4Q475 as seed ortholog is 100%.
Bootstrap support for D3BD45 as seed ortholog is 100%.

Group of orthologs #844. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:137 P.pallidum:137

Q4QDE8              	100.00%		D3AWH8              	100.00%
Bootstrap support for Q4QDE8 as seed ortholog is 100%.
Bootstrap support for D3AWH8 as seed ortholog is 100%.

Group of orthologs #845. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:137 P.pallidum:137

Q4Q5L4              	100.00%		D3BFX3              	100.00%
Bootstrap support for Q4Q5L4 as seed ortholog is 100%.
Bootstrap support for D3BFX3 as seed ortholog is 100%.

Group of orthologs #846. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:137 P.pallidum:137

Q4Q7I1              	100.00%		D3BNL3              	100.00%
Bootstrap support for Q4Q7I1 as seed ortholog is 100%.
Bootstrap support for D3BNL3 as seed ortholog is 100%.

Group of orthologs #847. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:8 P.pallidum:47

E9AEE3              	100.00%		D3BL51              	100.00%
                    	       		D3BR40              	6.29%
Bootstrap support for E9AEE3 as seed ortholog is 57%.
Alternative seed ortholog is Q4Q9E1 (8 bits away from this cluster)
Bootstrap support for D3BL51 as seed ortholog is 93%.

Group of orthologs #848. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:41 P.pallidum:136

Q4QCC3              	100.00%		D3AYL6              	100.00%
Bootstrap support for Q4QCC3 as seed ortholog is 93%.
Bootstrap support for D3AYL6 as seed ortholog is 100%.

Group of orthologs #849. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.pallidum:136

Q4Q0I6              	100.00%		D3BIM4              	100.00%
Bootstrap support for Q4Q0I6 as seed ortholog is 100%.
Bootstrap support for D3BIM4 as seed ortholog is 100%.

Group of orthologs #850. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.pallidum:136

Q4QA41              	100.00%		D3BC80              	100.00%
Bootstrap support for Q4QA41 as seed ortholog is 100%.
Bootstrap support for D3BC80 as seed ortholog is 100%.

Group of orthologs #851. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.pallidum:136

E9AFQ9              	100.00%		D3BTY7              	100.00%
Bootstrap support for E9AFQ9 as seed ortholog is 100%.
Bootstrap support for D3BTY7 as seed ortholog is 100%.

Group of orthologs #852. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.pallidum:35

Q4QJH5              	100.00%		D3BGS2              	100.00%
Bootstrap support for Q4QJH5 as seed ortholog is 100%.
Bootstrap support for D3BGS2 as seed ortholog is 89%.

Group of orthologs #853. Best score 135 bits
Score difference with first non-orthologous sequence - L.major:135 P.pallidum:135

Q4Q1I8              	100.00%		D3AZG0              	100.00%
Bootstrap support for Q4Q1I8 as seed ortholog is 100%.
Bootstrap support for D3AZG0 as seed ortholog is 100%.

Group of orthologs #854. Best score 135 bits
Score difference with first non-orthologous sequence - L.major:135 P.pallidum:135

E9AFL5              	100.00%		D3BBC8              	100.00%
Bootstrap support for E9AFL5 as seed ortholog is 100%.
Bootstrap support for D3BBC8 as seed ortholog is 100%.

Group of orthologs #855. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:134

E9AEK1              	100.00%		D3AZM6              	100.00%
Bootstrap support for E9AEK1 as seed ortholog is 100%.
Bootstrap support for D3AZM6 as seed ortholog is 100%.

Group of orthologs #856. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:134

Q4Q9P9              	100.00%		D3B2G1              	100.00%
Bootstrap support for Q4Q9P9 as seed ortholog is 100%.
Bootstrap support for D3B2G1 as seed ortholog is 100%.

Group of orthologs #857. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:134

E9AEX6              	100.00%		D3BHJ9              	100.00%
Bootstrap support for E9AEX6 as seed ortholog is 100%.
Bootstrap support for D3BHJ9 as seed ortholog is 100%.

Group of orthologs #858. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:134

E9ACM0              	100.00%		D3BPG4              	100.00%
Bootstrap support for E9ACM0 as seed ortholog is 100%.
Bootstrap support for D3BPG4 as seed ortholog is 100%.

Group of orthologs #859. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:134

Q4Q8Y8              	100.00%		D3BLS8              	100.00%
Bootstrap support for Q4Q8Y8 as seed ortholog is 100%.
Bootstrap support for D3BLS8 as seed ortholog is 100%.

Group of orthologs #860. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.pallidum:134

Q4QIH2              	100.00%		D3BVG1              	100.00%
Bootstrap support for Q4QIH2 as seed ortholog is 100%.
Bootstrap support for D3BVG1 as seed ortholog is 100%.

Group of orthologs #861. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.pallidum:133

Q4Q2I7              	100.00%		D3AW40              	100.00%
                    	       		D3B7M2              	25.99%
Bootstrap support for Q4Q2I7 as seed ortholog is 100%.
Bootstrap support for D3AW40 as seed ortholog is 100%.

Group of orthologs #862. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.pallidum:133

Q4Q7X1              	100.00%		D3B061              	100.00%
Bootstrap support for Q4Q7X1 as seed ortholog is 100%.
Bootstrap support for D3B061 as seed ortholog is 100%.

Group of orthologs #863. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.pallidum:133

Q4Q0U9              	100.00%		D3B7B3              	100.00%
Bootstrap support for Q4Q0U9 as seed ortholog is 100%.
Bootstrap support for D3B7B3 as seed ortholog is 100%.

Group of orthologs #864. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.pallidum:133

Q4QIL9              	100.00%		D3AZM2              	100.00%
Bootstrap support for Q4QIL9 as seed ortholog is 100%.
Bootstrap support for D3AZM2 as seed ortholog is 100%.

Group of orthologs #865. Best score 132 bits
Score difference with first non-orthologous sequence - L.major:132 P.pallidum:132

Q4QC01              	100.00%		D3BIL1              	100.00%
Bootstrap support for Q4QC01 as seed ortholog is 100%.
Bootstrap support for D3BIL1 as seed ortholog is 100%.

Group of orthologs #866. Best score 132 bits
Score difference with first non-orthologous sequence - L.major:19 P.pallidum:132

Q4QEY2              	100.00%		D3BRU8              	100.00%
Bootstrap support for Q4QEY2 as seed ortholog is 57%.
Alternative seed ortholog is E9AFW7 (19 bits away from this cluster)
Bootstrap support for D3BRU8 as seed ortholog is 100%.

Group of orthologs #867. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.pallidum:131

E9AFZ8              	100.00%		D3B790              	100.00%
Bootstrap support for E9AFZ8 as seed ortholog is 100%.
Bootstrap support for D3B790 as seed ortholog is 100%.

Group of orthologs #868. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.pallidum:131

Q4QIC4              	100.00%		D3B6Y3              	100.00%
Bootstrap support for Q4QIC4 as seed ortholog is 100%.
Bootstrap support for D3B6Y3 as seed ortholog is 100%.

Group of orthologs #869. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.pallidum:131

Q4Q567              	100.00%		D3BR47              	100.00%
Bootstrap support for Q4Q567 as seed ortholog is 100%.
Bootstrap support for D3BR47 as seed ortholog is 100%.

Group of orthologs #870. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.pallidum:131

Q4QJI0              	100.00%		D3BII7              	100.00%
Bootstrap support for Q4QJI0 as seed ortholog is 100%.
Bootstrap support for D3BII7 as seed ortholog is 100%.

Group of orthologs #871. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:130

Q4QAA6              	100.00%		D3AW80              	100.00%
                    	       		D3B3Q3              	10.07%
Bootstrap support for Q4QAA6 as seed ortholog is 100%.
Bootstrap support for D3AW80 as seed ortholog is 100%.

Group of orthologs #872. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:79 P.pallidum:37

Q4QJ92              	100.00%		D3BJM3              	100.00%
                    	       		D3BPM9              	11.40%
Bootstrap support for Q4QJ92 as seed ortholog is 99%.
Bootstrap support for D3BJM3 as seed ortholog is 85%.

Group of orthologs #873. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:130

E9AFQ2              	100.00%		D3AZU6              	100.00%
Bootstrap support for E9AFQ2 as seed ortholog is 100%.
Bootstrap support for D3AZU6 as seed ortholog is 100%.

Group of orthologs #874. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:130

Q4QD90              	100.00%		D3B863              	100.00%
Bootstrap support for Q4QD90 as seed ortholog is 100%.
Bootstrap support for D3B863 as seed ortholog is 100%.

Group of orthologs #875. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:130

Q4Q1V6              	100.00%		D3BM61              	100.00%
Bootstrap support for Q4Q1V6 as seed ortholog is 100%.
Bootstrap support for D3BM61 as seed ortholog is 100%.

Group of orthologs #876. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:130 P.pallidum:130

Q4QEM6              	100.00%		D3BKU3              	100.00%
Bootstrap support for Q4QEM6 as seed ortholog is 100%.
Bootstrap support for D3BKU3 as seed ortholog is 100%.

Group of orthologs #877. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q4D4              	100.00%		D3B3R0              	100.00%
                    	       		D3BCZ6              	58.27%
                    	       		D3BD24              	41.83%
Bootstrap support for Q4Q4D4 as seed ortholog is 100%.
Bootstrap support for D3B3R0 as seed ortholog is 100%.

Group of orthologs #878. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q1J5              	100.00%		D3BEZ0              	100.00%
Q4Q481              	100.00%		
Bootstrap support for Q4Q1J5 as seed ortholog is 100%.
Bootstrap support for Q4Q481 as seed ortholog is 100%.
Bootstrap support for D3BEZ0 as seed ortholog is 100%.

Group of orthologs #879. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q6V8              	100.00%		D3BLT5              	100.00%
Q4QBK7              	7.70%		
Bootstrap support for Q4Q6V8 as seed ortholog is 100%.
Bootstrap support for D3BLT5 as seed ortholog is 100%.

Group of orthologs #880. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q150              	100.00%		D3AW87              	100.00%
Bootstrap support for Q4Q150 as seed ortholog is 100%.
Bootstrap support for D3AW87 as seed ortholog is 100%.

Group of orthologs #881. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4QA77              	100.00%		D3B429              	100.00%
Bootstrap support for Q4QA77 as seed ortholog is 100%.
Bootstrap support for D3B429 as seed ortholog is 100%.

Group of orthologs #882. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4QEB2              	100.00%		D3B496              	100.00%
Bootstrap support for Q4QEB2 as seed ortholog is 100%.
Bootstrap support for D3B496 as seed ortholog is 100%.

Group of orthologs #883. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

E9AEQ2              	100.00%		D3BVF6              	100.00%
Bootstrap support for E9AEQ2 as seed ortholog is 100%.
Bootstrap support for D3BVF6 as seed ortholog is 100%.

Group of orthologs #884. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q3M7              	100.00%		D3BVL2              	100.00%
Bootstrap support for Q4Q3M7 as seed ortholog is 100%.
Bootstrap support for D3BVL2 as seed ortholog is 100%.

Group of orthologs #885. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q845              	100.00%		D3BRT9              	100.00%
Bootstrap support for Q4Q845 as seed ortholog is 100%.
Bootstrap support for D3BRT9 as seed ortholog is 100%.

Group of orthologs #886. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.pallidum:129

Q4Q7Z6              	100.00%		D3BSZ4              	100.00%
Bootstrap support for Q4Q7Z6 as seed ortholog is 100%.
Bootstrap support for D3BSZ4 as seed ortholog is 100%.

Group of orthologs #887. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:128

E9AC22              	100.00%		D3BTY6              	100.00%
                    	       		D3BTY4              	16.03%
                    	       		D3B2L6              	7.49%
Bootstrap support for E9AC22 as seed ortholog is 98%.
Bootstrap support for D3BTY6 as seed ortholog is 100%.

Group of orthologs #888. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:67

Q4Q2U5              	100.00%		D3BL06              	100.00%
Q4Q2U6              	18.97%		
Bootstrap support for Q4Q2U5 as seed ortholog is 100%.
Bootstrap support for D3BL06 as seed ortholog is 83%.

Group of orthologs #889. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:128

Q4Q1F6              	100.00%		D3B4X6              	100.00%
Bootstrap support for Q4Q1F6 as seed ortholog is 100%.
Bootstrap support for D3B4X6 as seed ortholog is 100%.

Group of orthologs #890. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:128

Q4Q7A6              	100.00%		D3B3B6              	100.00%
Bootstrap support for Q4Q7A6 as seed ortholog is 100%.
Bootstrap support for D3B3B6 as seed ortholog is 100%.

Group of orthologs #891. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:128

Q4QBI9              	100.00%		D3BAF1              	100.00%
Bootstrap support for Q4QBI9 as seed ortholog is 100%.
Bootstrap support for D3BAF1 as seed ortholog is 100%.

Group of orthologs #892. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:128

Q4QBT9              	100.00%		D3BCE9              	100.00%
Bootstrap support for Q4QBT9 as seed ortholog is 100%.
Bootstrap support for D3BCE9 as seed ortholog is 100%.

Group of orthologs #893. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:128

Q68RJ8              	100.00%		D3B644              	100.00%
Bootstrap support for Q68RJ8 as seed ortholog is 100%.
Bootstrap support for D3B644 as seed ortholog is 100%.

Group of orthologs #894. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.pallidum:128

Q4QF32              	100.00%		D3BJB1              	100.00%
Bootstrap support for Q4QF32 as seed ortholog is 100%.
Bootstrap support for D3BJB1 as seed ortholog is 100%.

Group of orthologs #895. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:128

Q4QCN3              	100.00%		D3BNG5              	100.00%
Bootstrap support for Q4QCN3 as seed ortholog is 62%.
Alternative seed ortholog is Q4Q4Y5 (9 bits away from this cluster)
Bootstrap support for D3BNG5 as seed ortholog is 100%.

Group of orthologs #896. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

Q4QI80              	100.00%		D3AVG3              	100.00%
Q4QI79              	14.10%		D3BV46              	6.53%
Bootstrap support for Q4QI80 as seed ortholog is 100%.
Bootstrap support for D3AVG3 as seed ortholog is 100%.

Group of orthologs #897. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

E9AD19              	100.00%		D3B7V9              	100.00%
Bootstrap support for E9AD19 as seed ortholog is 100%.
Bootstrap support for D3B7V9 as seed ortholog is 100%.

Group of orthologs #898. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

E9AFJ9              	100.00%		D3BDT3              	100.00%
Bootstrap support for E9AFJ9 as seed ortholog is 100%.
Bootstrap support for D3BDT3 as seed ortholog is 100%.

Group of orthologs #899. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

E9ADW3              	100.00%		D3BIG5              	100.00%
Bootstrap support for E9ADW3 as seed ortholog is 100%.
Bootstrap support for D3BIG5 as seed ortholog is 100%.

Group of orthologs #900. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

Q4Q965              	100.00%		D3B9F2              	100.00%
Bootstrap support for Q4Q965 as seed ortholog is 100%.
Bootstrap support for D3B9F2 as seed ortholog is 100%.

Group of orthologs #901. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

E9AC36              	100.00%		D3BU77              	100.00%
Bootstrap support for E9AC36 as seed ortholog is 100%.
Bootstrap support for D3BU77 as seed ortholog is 100%.

Group of orthologs #902. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:127

Q4Q460              	100.00%		D3BRK2              	100.00%
Bootstrap support for Q4Q460 as seed ortholog is 100%.
Bootstrap support for D3BRK2 as seed ortholog is 100%.

Group of orthologs #903. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.pallidum:45

Q4Q2S7              	100.00%		D3BUW8              	100.00%
Bootstrap support for Q4Q2S7 as seed ortholog is 100%.
Bootstrap support for D3BUW8 as seed ortholog is 93%.

Group of orthologs #904. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:34 P.pallidum:126

Q4Q3S5              	100.00%		D3B7E4              	100.00%
Bootstrap support for Q4Q3S5 as seed ortholog is 80%.
Bootstrap support for D3B7E4 as seed ortholog is 100%.

Group of orthologs #905. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:126 P.pallidum:126

E9AC17              	100.00%		D3BJX8              	100.00%
Bootstrap support for E9AC17 as seed ortholog is 100%.
Bootstrap support for D3BJX8 as seed ortholog is 100%.

Group of orthologs #906. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:40 P.pallidum:126

Q4Q5Z1              	100.00%		D3BJ01              	100.00%
Bootstrap support for Q4Q5Z1 as seed ortholog is 75%.
Bootstrap support for D3BJ01 as seed ortholog is 100%.

Group of orthologs #907. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:126 P.pallidum:126

Q4Q1E7              	100.00%		D3BQQ8              	100.00%
Bootstrap support for Q4Q1E7 as seed ortholog is 100%.
Bootstrap support for D3BQQ8 as seed ortholog is 100%.

Group of orthologs #908. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:126 P.pallidum:126

Q4Q784              	100.00%		D3BN16              	100.00%
Bootstrap support for Q4Q784 as seed ortholog is 100%.
Bootstrap support for D3BN16 as seed ortholog is 100%.

Group of orthologs #909. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:41 P.pallidum:126

Q4Q7N4              	100.00%		D3BP66              	100.00%
Bootstrap support for Q4Q7N4 as seed ortholog is 92%.
Bootstrap support for D3BP66 as seed ortholog is 100%.

Group of orthologs #910. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:126 P.pallidum:126

Q4QCZ8              	100.00%		D3BTM7              	100.00%
Bootstrap support for Q4QCZ8 as seed ortholog is 100%.
Bootstrap support for D3BTM7 as seed ortholog is 100%.

Group of orthologs #911. Best score 124 bits
Score difference with first non-orthologous sequence - L.major:124 P.pallidum:74

E9ACV9              	100.00%		D3B3R2              	100.00%
Bootstrap support for E9ACV9 as seed ortholog is 100%.
Bootstrap support for D3B3R2 as seed ortholog is 97%.

Group of orthologs #912. Best score 124 bits
Score difference with first non-orthologous sequence - L.major:124 P.pallidum:124

Q4Q3L3              	100.00%		D3B7U1              	100.00%
Bootstrap support for Q4Q3L3 as seed ortholog is 100%.
Bootstrap support for D3B7U1 as seed ortholog is 100%.

Group of orthologs #913. Best score 124 bits
Score difference with first non-orthologous sequence - L.major:124 P.pallidum:124

Q4Q2K6              	100.00%		D3BA93              	100.00%
Bootstrap support for Q4Q2K6 as seed ortholog is 100%.
Bootstrap support for D3BA93 as seed ortholog is 100%.

Group of orthologs #914. Best score 124 bits
Score difference with first non-orthologous sequence - L.major:124 P.pallidum:124

Q4Q5E8              	100.00%		D3BH79              	100.00%
Bootstrap support for Q4Q5E8 as seed ortholog is 100%.
Bootstrap support for D3BH79 as seed ortholog is 100%.

Group of orthologs #915. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:23 P.pallidum:123

E9ACV0              	100.00%		D3B4Y1              	100.00%
Q4Q225              	17.21%		D3B1R8              	8.59%
Q4QFG7              	9.67%		
Bootstrap support for E9ACV0 as seed ortholog is 82%.
Bootstrap support for D3B4Y1 as seed ortholog is 100%.

Group of orthologs #916. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:20 P.pallidum:123

Q4QD06              	100.00%		D3BIA2              	100.00%
Q4QE46              	6.55%		
E9ACI6              	5.42%		
Bootstrap support for Q4QD06 as seed ortholog is 72%.
Alternative seed ortholog is Q4QCK8 (20 bits away from this cluster)
Bootstrap support for D3BIA2 as seed ortholog is 100%.

Group of orthologs #917. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:123

Q4QD46              	100.00%		D3BH99              	100.00%
                    	       		D3B1C3              	14.52%
Bootstrap support for Q4QD46 as seed ortholog is 99%.
Bootstrap support for D3BH99 as seed ortholog is 100%.

Group of orthologs #918. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

E9AFN7              	100.00%		D3B6T6              	100.00%
Bootstrap support for E9AFN7 as seed ortholog is 100%.
Bootstrap support for D3B6T6 as seed ortholog is 100%.

Group of orthologs #919. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

Q4QBF5              	100.00%		D3AWF8              	100.00%
Bootstrap support for Q4QBF5 as seed ortholog is 100%.
Bootstrap support for D3AWF8 as seed ortholog is 100%.

Group of orthologs #920. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

Q4Q5M0              	100.00%		D3B2R4              	100.00%
Bootstrap support for Q4Q5M0 as seed ortholog is 100%.
Bootstrap support for D3B2R4 as seed ortholog is 100%.

Group of orthologs #921. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

E9AFM7              	100.00%		D3BCC3              	100.00%
Bootstrap support for E9AFM7 as seed ortholog is 100%.
Bootstrap support for D3BCC3 as seed ortholog is 100%.

Group of orthologs #922. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

Q4QEN5              	100.00%		D3B0E6              	100.00%
Bootstrap support for Q4QEN5 as seed ortholog is 100%.
Bootstrap support for D3B0E6 as seed ortholog is 100%.

Group of orthologs #923. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

E9AF00              	100.00%		D3BQD4              	100.00%
Bootstrap support for E9AF00 as seed ortholog is 100%.
Bootstrap support for D3BQD4 as seed ortholog is 100%.

Group of orthologs #924. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

Q4Q3H3              	100.00%		D3BMJ9              	100.00%
Bootstrap support for Q4Q3H3 as seed ortholog is 100%.
Bootstrap support for D3BMJ9 as seed ortholog is 100%.

Group of orthologs #925. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.pallidum:123

Q4QGF6              	100.00%		D3BN92              	100.00%
Bootstrap support for Q4QGF6 as seed ortholog is 100%.
Bootstrap support for D3BN92 as seed ortholog is 100%.

Group of orthologs #926. Best score 122 bits
Score difference with first non-orthologous sequence - L.major:122 P.pallidum:122

Q4QGW1              	100.00%		D3B1M9              	100.00%
                    	       		D3B7B4              	31.10%
Bootstrap support for Q4QGW1 as seed ortholog is 100%.
Bootstrap support for D3B1M9 as seed ortholog is 100%.

Group of orthologs #927. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.pallidum:121

Q4QIS5              	100.00%		D3B586              	100.00%
Bootstrap support for Q4QIS5 as seed ortholog is 100%.
Bootstrap support for D3B586 as seed ortholog is 100%.

Group of orthologs #928. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.pallidum:121

Q4Q8P3              	100.00%		D3BL72              	100.00%
Bootstrap support for Q4Q8P3 as seed ortholog is 100%.
Bootstrap support for D3BL72 as seed ortholog is 100%.

Group of orthologs #929. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.pallidum:121

Q4Q8G8              	100.00%		D3BLM9              	100.00%
Bootstrap support for Q4Q8G8 as seed ortholog is 100%.
Bootstrap support for D3BLM9 as seed ortholog is 100%.

Group of orthologs #930. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.pallidum:121

Q4Q7Q2              	100.00%		D3BUN5              	100.00%
Bootstrap support for Q4Q7Q2 as seed ortholog is 100%.
Bootstrap support for D3BUN5 as seed ortholog is 100%.

Group of orthologs #931. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.pallidum:121

Q4QFZ6              	100.00%		D3BR70              	100.00%
Bootstrap support for Q4QFZ6 as seed ortholog is 100%.
Bootstrap support for D3BR70 as seed ortholog is 100%.

Group of orthologs #932. Best score 120 bits
Score difference with first non-orthologous sequence - L.major:4 P.pallidum:120

Q4QG90              	100.00%		D3BCF9              	100.00%
Bootstrap support for Q4QG90 as seed ortholog is 49%.
Alternative seed ortholog is E9AE68 (4 bits away from this cluster)
Bootstrap support for D3BCF9 as seed ortholog is 100%.

Group of orthologs #933. Best score 119 bits
Score difference with first non-orthologous sequence - L.major:51 P.pallidum:38

Q4Q5H1              	100.00%		D3AVN2              	100.00%
Q4Q5H0              	22.31%		
Bootstrap support for Q4Q5H1 as seed ortholog is 90%.
Bootstrap support for D3AVN2 as seed ortholog is 84%.

Group of orthologs #934. Best score 119 bits
Score difference with first non-orthologous sequence - L.major:119 P.pallidum:119

Q4QA07              	100.00%		D3AWF3              	100.00%
Bootstrap support for Q4QA07 as seed ortholog is 100%.
Bootstrap support for D3AWF3 as seed ortholog is 100%.

Group of orthologs #935. Best score 119 bits
Score difference with first non-orthologous sequence - L.major:119 P.pallidum:119

Q4Q1H1              	100.00%		D3BKL0              	100.00%
Bootstrap support for Q4Q1H1 as seed ortholog is 100%.
Bootstrap support for D3BKL0 as seed ortholog is 100%.

Group of orthologs #936. Best score 119 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:15

E9AFF7              	100.00%		D3BRJ2              	100.00%
Bootstrap support for E9AFF7 as seed ortholog is 90%.
Bootstrap support for D3BRJ2 as seed ortholog is 55%.
Alternative seed ortholog is D3BHL0 (15 bits away from this cluster)

Group of orthologs #937. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.pallidum:118

E9ADU9              	100.00%		D3B1R4              	100.00%
Bootstrap support for E9ADU9 as seed ortholog is 100%.
Bootstrap support for D3B1R4 as seed ortholog is 100%.

Group of orthologs #938. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.pallidum:118

Q4Q7N0              	100.00%		D3BB72              	100.00%
Bootstrap support for Q4Q7N0 as seed ortholog is 100%.
Bootstrap support for D3BB72 as seed ortholog is 100%.

Group of orthologs #939. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.pallidum:118

Q4Q9G2              	100.00%		D3BCE5              	100.00%
Bootstrap support for Q4Q9G2 as seed ortholog is 100%.
Bootstrap support for D3BCE5 as seed ortholog is 100%.

Group of orthologs #940. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.pallidum:118

Q4QJ20              	100.00%		D3B4P6              	100.00%
Bootstrap support for Q4QJ20 as seed ortholog is 100%.
Bootstrap support for D3B4P6 as seed ortholog is 100%.

Group of orthologs #941. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:18 P.pallidum:31

Q4QH61              	100.00%		D3BLU6              	100.00%
Bootstrap support for Q4QH61 as seed ortholog is 66%.
Alternative seed ortholog is Q4Q8B2 (18 bits away from this cluster)
Bootstrap support for D3BLU6 as seed ortholog is 77%.

Group of orthologs #942. Best score 117 bits
Score difference with first non-orthologous sequence - L.major:68 P.pallidum:117

Q4Q3B6              	100.00%		D3B413              	100.00%
Bootstrap support for Q4Q3B6 as seed ortholog is 99%.
Bootstrap support for D3B413 as seed ortholog is 100%.

Group of orthologs #943. Best score 117 bits
Score difference with first non-orthologous sequence - L.major:117 P.pallidum:117

Q4QDA3              	100.00%		D3BBM0              	100.00%
Bootstrap support for Q4QDA3 as seed ortholog is 100%.
Bootstrap support for D3BBM0 as seed ortholog is 100%.

Group of orthologs #944. Best score 117 bits
Score difference with first non-orthologous sequence - L.major:117 P.pallidum:117

Q4Q806              	100.00%		D3BIR0              	100.00%
Bootstrap support for Q4Q806 as seed ortholog is 100%.
Bootstrap support for D3BIR0 as seed ortholog is 100%.

Group of orthologs #945. Best score 117 bits
Score difference with first non-orthologous sequence - L.major:11 P.pallidum:117

Q4Q5R2              	100.00%		D3BU56              	100.00%
Bootstrap support for Q4Q5R2 as seed ortholog is 75%.
Bootstrap support for D3BU56 as seed ortholog is 100%.

Group of orthologs #946. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4Q1A9              	100.00%		D3AZD5              	100.00%
Bootstrap support for Q4Q1A9 as seed ortholog is 100%.
Bootstrap support for D3AZD5 as seed ortholog is 100%.

Group of orthologs #947. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4Q4N3              	100.00%		D3B266              	100.00%
Bootstrap support for Q4Q4N3 as seed ortholog is 100%.
Bootstrap support for D3B266 as seed ortholog is 100%.

Group of orthologs #948. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4Q5M9              	100.00%		D3BAA0              	100.00%
Bootstrap support for Q4Q5M9 as seed ortholog is 100%.
Bootstrap support for D3BAA0 as seed ortholog is 100%.

Group of orthologs #949. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4Q956              	100.00%		D3B957              	100.00%
Bootstrap support for Q4Q956 as seed ortholog is 100%.
Bootstrap support for D3B957 as seed ortholog is 100%.

Group of orthologs #950. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4QFI8              	100.00%		D3B3T8              	100.00%
Bootstrap support for Q4QFI8 as seed ortholog is 100%.
Bootstrap support for D3B3T8 as seed ortholog is 100%.

Group of orthologs #951. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4QIV2              	100.00%		D3B5F4              	100.00%
Bootstrap support for Q4QIV2 as seed ortholog is 100%.
Bootstrap support for D3B5F4 as seed ortholog is 100%.

Group of orthologs #952. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4QI51              	100.00%		D3BBU3              	100.00%
Bootstrap support for Q4QI51 as seed ortholog is 100%.
Bootstrap support for D3BBU3 as seed ortholog is 100%.

Group of orthologs #953. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.pallidum:116

Q4Q892              	100.00%		D3BQQ3              	100.00%
Bootstrap support for Q4Q892 as seed ortholog is 100%.
Bootstrap support for D3BQQ3 as seed ortholog is 100%.

Group of orthologs #954. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:115

Q9U111              	100.00%		D3BN29              	100.00%
O97212              	98.58%		
Bootstrap support for Q9U111 as seed ortholog is 100%.
Bootstrap support for D3BN29 as seed ortholog is 100%.

Group of orthologs #955. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:115

Q4QBT7              	100.00%		D3B0P6              	100.00%
Bootstrap support for Q4QBT7 as seed ortholog is 100%.
Bootstrap support for D3B0P6 as seed ortholog is 100%.

Group of orthologs #956. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:115

Q4QAF7              	100.00%		D3B5T6              	100.00%
Bootstrap support for Q4QAF7 as seed ortholog is 100%.
Bootstrap support for D3B5T6 as seed ortholog is 100%.

Group of orthologs #957. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:115

Q4Q9L4              	100.00%		D3B9X9              	100.00%
Bootstrap support for Q4Q9L4 as seed ortholog is 100%.
Bootstrap support for D3B9X9 as seed ortholog is 100%.

Group of orthologs #958. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:115

Q9U0V5              	100.00%		D3B6T4              	100.00%
Bootstrap support for Q9U0V5 as seed ortholog is 100%.
Bootstrap support for D3B6T4 as seed ortholog is 100%.

Group of orthologs #959. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.pallidum:115

Q4Q7L9              	100.00%		D3BM02              	100.00%
Bootstrap support for Q4Q7L9 as seed ortholog is 100%.
Bootstrap support for D3BM02 as seed ortholog is 100%.

Group of orthologs #960. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:13 P.pallidum:114

Q4QFQ9              	100.00%		D3B201              	100.00%
Q4QFR6              	19.20%		D3BPA0              	10.68%
Q4QFR0              	18.20%		
Q4QFR5              	18.00%		
Q4QFR3              	15.80%		
Q4QFR2              	15.80%		
Q4QFR1              	14.00%		
Q4QFR4              	10.40%		
Q4QFR7              	9.40%		
Q4QFS0              	6.00%		
Bootstrap support for Q4QFQ9 as seed ortholog is 66%.
Alternative seed ortholog is Q4QJ85 (13 bits away from this cluster)
Bootstrap support for D3B201 as seed ortholog is 100%.

Group of orthologs #961. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.pallidum:114

Q4Q3B5              	100.00%		D3B747              	100.00%
                    	       		D3B8B5              	14.04%
Bootstrap support for Q4Q3B5 as seed ortholog is 100%.
Bootstrap support for D3B747 as seed ortholog is 100%.

Group of orthologs #962. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.pallidum:114

Q4Q6X0              	100.00%		D3BBQ4              	100.00%
Q4Q8L6              	96.72%		
Bootstrap support for Q4Q6X0 as seed ortholog is 100%.
Bootstrap support for D3BBQ4 as seed ortholog is 100%.

Group of orthologs #963. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.pallidum:114

E9AFC7              	100.00%		D3B267              	100.00%
Bootstrap support for E9AFC7 as seed ortholog is 100%.
Bootstrap support for D3B267 as seed ortholog is 100%.

Group of orthologs #964. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:7 P.pallidum:114

Q4Q3T8              	100.00%		D3AZH2              	100.00%
Bootstrap support for Q4Q3T8 as seed ortholog is 44%.
Alternative seed ortholog is O61128 (7 bits away from this cluster)
Bootstrap support for D3AZH2 as seed ortholog is 100%.

Group of orthologs #965. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.pallidum:23

Q4Q446              	100.00%		D3B8K2              	100.00%
Bootstrap support for Q4Q446 as seed ortholog is 100%.
Bootstrap support for D3B8K2 as seed ortholog is 89%.

Group of orthologs #966. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:114

Q4Q4J2              	100.00%		D3BCF1              	100.00%
Bootstrap support for Q4Q4J2 as seed ortholog is 86%.
Bootstrap support for D3BCF1 as seed ortholog is 100%.

Group of orthologs #967. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.pallidum:14

Q4QJ76              	100.00%		D3BBN9              	100.00%
Bootstrap support for Q4QJ76 as seed ortholog is 100%.
Bootstrap support for D3BBN9 as seed ortholog is 66%.
Alternative seed ortholog is D3B3W0 (14 bits away from this cluster)

Group of orthologs #968. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:114

Q4QDK8              	100.00%		D3BPH9              	100.00%
Bootstrap support for Q4QDK8 as seed ortholog is 92%.
Bootstrap support for D3BPH9 as seed ortholog is 100%.

Group of orthologs #969. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.pallidum:114

Q9BIR6              	100.00%		D3BJ34              	100.00%
Bootstrap support for Q9BIR6 as seed ortholog is 100%.
Bootstrap support for D3BJ34 as seed ortholog is 100%.

Group of orthologs #970. Best score 113 bits
Score difference with first non-orthologous sequence - L.major:113 P.pallidum:113

Q4Q5F9              	100.00%		D3AW96              	100.00%
Bootstrap support for Q4Q5F9 as seed ortholog is 100%.
Bootstrap support for D3AW96 as seed ortholog is 100%.

Group of orthologs #971. Best score 113 bits
Score difference with first non-orthologous sequence - L.major:12 P.pallidum:40

E9AFI5              	100.00%		D3BSG7              	100.00%
Bootstrap support for E9AFI5 as seed ortholog is 66%.
Alternative seed ortholog is Q4QJ67 (12 bits away from this cluster)
Bootstrap support for D3BSG7 as seed ortholog is 89%.

Group of orthologs #972. Best score 113 bits
Score difference with first non-orthologous sequence - L.major:113 P.pallidum:113

Q4QJA9              	100.00%		D3BIL4              	100.00%
Bootstrap support for Q4QJA9 as seed ortholog is 100%.
Bootstrap support for D3BIL4 as seed ortholog is 100%.

Group of orthologs #973. Best score 113 bits
Score difference with first non-orthologous sequence - L.major:113 P.pallidum:113

Q4QE62              	100.00%		D3BQG1              	100.00%
Bootstrap support for Q4QE62 as seed ortholog is 100%.
Bootstrap support for D3BQG1 as seed ortholog is 100%.

Group of orthologs #974. Best score 112 bits
Score difference with first non-orthologous sequence - L.major:112 P.pallidum:112

Q4QF58              	100.00%		D3BJG7              	100.00%
Q4QF59              	100.00%		
Q4QG33              	20.50%		
Q4QH25              	17.88%		
Q4Q1M9              	14.92%		
Bootstrap support for Q4QF58 as seed ortholog is 100%.
Bootstrap support for Q4QF59 as seed ortholog is 100%.
Bootstrap support for D3BJG7 as seed ortholog is 100%.

Group of orthologs #975. Best score 112 bits
Score difference with first non-orthologous sequence - L.major:8 P.pallidum:112

E9ACT7              	100.00%		D3BSQ1              	100.00%
Bootstrap support for E9ACT7 as seed ortholog is 34%.
Alternative seed ortholog is Q9U1D8 (8 bits away from this cluster)
Bootstrap support for D3BSQ1 as seed ortholog is 100%.

Group of orthologs #976. Best score 112 bits
Score difference with first non-orthologous sequence - L.major:112 P.pallidum:112

Q4Q0A8              	100.00%		D3BU02              	100.00%
Bootstrap support for Q4Q0A8 as seed ortholog is 100%.
Bootstrap support for D3BU02 as seed ortholog is 100%.

Group of orthologs #977. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:67 P.pallidum:25

E9AEU5              	100.00%		D3BPG3              	100.00%
E9AEU6              	15.45%		
Bootstrap support for E9AEU5 as seed ortholog is 98%.
Bootstrap support for D3BPG3 as seed ortholog is 78%.

Group of orthologs #978. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.pallidum:111

Q4QFK7              	100.00%		D3BB06              	100.00%
Q4Q216              	97.52%		
Bootstrap support for Q4QFK7 as seed ortholog is 100%.
Bootstrap support for D3BB06 as seed ortholog is 100%.

Group of orthologs #979. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.pallidum:67

Q4Q6P4              	100.00%		D3AW79              	100.00%
Bootstrap support for Q4Q6P4 as seed ortholog is 100%.
Bootstrap support for D3AW79 as seed ortholog is 95%.

Group of orthologs #980. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.pallidum:111

E9AC32              	100.00%		D3B963              	100.00%
Bootstrap support for E9AC32 as seed ortholog is 100%.
Bootstrap support for D3B963 as seed ortholog is 100%.

Group of orthologs #981. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.pallidum:111

Q4QEZ4              	100.00%		D3B029              	100.00%
Bootstrap support for Q4QEZ4 as seed ortholog is 100%.
Bootstrap support for D3B029 as seed ortholog is 100%.

Group of orthologs #982. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:111

Q4QBC1              	100.00%		D3B9Q4              	100.00%
Bootstrap support for Q4QBC1 as seed ortholog is 96%.
Bootstrap support for D3B9Q4 as seed ortholog is 100%.

Group of orthologs #983. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.pallidum:111

Q4Q242              	100.00%		D3BQZ1              	100.00%
Bootstrap support for Q4Q242 as seed ortholog is 100%.
Bootstrap support for D3BQZ1 as seed ortholog is 100%.

Group of orthologs #984. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.pallidum:111

Q4QGQ8              	100.00%		D3BKJ2              	100.00%
Bootstrap support for Q4QGQ8 as seed ortholog is 100%.
Bootstrap support for D3BKJ2 as seed ortholog is 100%.

Group of orthologs #985. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:16 P.pallidum:111

Q4QIF1              	100.00%		D3BNI8              	100.00%
Bootstrap support for Q4QIF1 as seed ortholog is 70%.
Alternative seed ortholog is Q4QH77 (16 bits away from this cluster)
Bootstrap support for D3BNI8 as seed ortholog is 100%.

Group of orthologs #986. Best score 110 bits
Score difference with first non-orthologous sequence - L.major:110 P.pallidum:110

Q4QGH6              	100.00%		D3BGN9              	100.00%
                    	       		D3AW08              	53.21%
                    	       		D3B435              	40.38%
Bootstrap support for Q4QGH6 as seed ortholog is 100%.
Bootstrap support for D3BGN9 as seed ortholog is 100%.

Group of orthologs #987. Best score 110 bits
Score difference with first non-orthologous sequence - L.major:110 P.pallidum:110

Q4QCA6              	100.00%		D3AY68              	100.00%
Bootstrap support for Q4QCA6 as seed ortholog is 100%.
Bootstrap support for D3AY68 as seed ortholog is 100%.

Group of orthologs #988. Best score 110 bits
Score difference with first non-orthologous sequence - L.major:110 P.pallidum:110

Q4QAE7              	100.00%		D3B703              	100.00%
Bootstrap support for Q4QAE7 as seed ortholog is 100%.
Bootstrap support for D3B703 as seed ortholog is 100%.

Group of orthologs #989. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4Q8B9              	100.00%		D3BB02              	100.00%
Q4Q8B8              	72.50%		
Bootstrap support for Q4Q8B9 as seed ortholog is 100%.
Bootstrap support for D3BB02 as seed ortholog is 100%.

Group of orthologs #990. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

E9ACH9              	100.00%		D3BAZ2              	100.00%
Bootstrap support for E9ACH9 as seed ortholog is 100%.
Bootstrap support for D3BAZ2 as seed ortholog is 100%.

Group of orthologs #991. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4Q0A0              	100.00%		D3BB09              	100.00%
Bootstrap support for Q4Q0A0 as seed ortholog is 100%.
Bootstrap support for D3BB09 as seed ortholog is 100%.

Group of orthologs #992. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:17

Q4Q574              	100.00%		D3B7N4              	100.00%
Bootstrap support for Q4Q574 as seed ortholog is 99%.
Bootstrap support for D3B7N4 as seed ortholog is 79%.

Group of orthologs #993. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4QFM6              	100.00%		D3AY63              	100.00%
Bootstrap support for Q4QFM6 as seed ortholog is 100%.
Bootstrap support for D3AY63 as seed ortholog is 100%.

Group of orthologs #994. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4Q0V1              	100.00%		D3BEM8              	100.00%
Bootstrap support for Q4Q0V1 as seed ortholog is 100%.
Bootstrap support for D3BEM8 as seed ortholog is 100%.

Group of orthologs #995. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4Q5S9              	100.00%		D3BCB9              	100.00%
Bootstrap support for Q4Q5S9 as seed ortholog is 100%.
Bootstrap support for D3BCB9 as seed ortholog is 100%.

Group of orthologs #996. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4QGU3              	100.00%		D3B4F5              	100.00%
Bootstrap support for Q4QGU3 as seed ortholog is 100%.
Bootstrap support for D3B4F5 as seed ortholog is 100%.

Group of orthologs #997. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4Q8Q3              	100.00%		D3BCH6              	100.00%
Bootstrap support for Q4Q8Q3 as seed ortholog is 100%.
Bootstrap support for D3BCH6 as seed ortholog is 100%.

Group of orthologs #998. Best score 109 bits
Score difference with first non-orthologous sequence - L.major:109 P.pallidum:109

Q4QA28              	100.00%		D3BQV6              	100.00%
Bootstrap support for Q4QA28 as seed ortholog is 100%.
Bootstrap support for D3BQV6 as seed ortholog is 100%.

Group of orthologs #999. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:108

Q4Q277              	100.00%		D3AWN6              	100.00%
Q4QFI3              	100.00%		D3BIG9              	51.43%
Q4QJ78              	84.44%		
Bootstrap support for Q4Q277 as seed ortholog is 100%.
Bootstrap support for Q4QFI3 as seed ortholog is 100%.
Bootstrap support for D3AWN6 as seed ortholog is 100%.

Group of orthologs #1000. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:15

Q4QBK4              	100.00%		D3B699              	100.00%
                    	       		D3B696              	13.64%
                    	       		D3AY15              	7.27%
Bootstrap support for Q4QBK4 as seed ortholog is 66%.
Alternative seed ortholog is Q4Q255 (9 bits away from this cluster)
Bootstrap support for D3B699 as seed ortholog is 79%.

Group of orthologs #1001. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:26 P.pallidum:108

E9ACJ3              	100.00%		D3BSZ1              	100.00%
                    	       		D3BGI1              	18.50%
                    	       		D3B8C9              	15.93%
Bootstrap support for E9ACJ3 as seed ortholog is 73%.
Alternative seed ortholog is O97203 (26 bits away from this cluster)
Bootstrap support for D3BSZ1 as seed ortholog is 100%.

Group of orthologs #1002. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:108

Q4Q5H6              	100.00%		D3AZM5              	100.00%
Bootstrap support for Q4Q5H6 as seed ortholog is 39%.
Alternative seed ortholog is Q4QAV3 (9 bits away from this cluster)
Bootstrap support for D3AZM5 as seed ortholog is 100%.

Group of orthologs #1003. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:34 P.pallidum:108

Q4QH93              	100.00%		D3AXX5              	100.00%
Bootstrap support for Q4QH93 as seed ortholog is 83%.
Bootstrap support for D3AXX5 as seed ortholog is 100%.

Group of orthologs #1004. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:108

Q4Q065              	100.00%		D3BF12              	100.00%
Bootstrap support for Q4Q065 as seed ortholog is 100%.
Bootstrap support for D3BF12 as seed ortholog is 100%.

Group of orthologs #1005. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:108

Q4Q8G4              	100.00%		D3B9Y5              	100.00%
Bootstrap support for Q4Q8G4 as seed ortholog is 100%.
Bootstrap support for D3B9Y5 as seed ortholog is 100%.

Group of orthologs #1006. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:108

Q4Q0F6              	100.00%		D3BKL8              	100.00%
Bootstrap support for Q4Q0F6 as seed ortholog is 100%.
Bootstrap support for D3BKL8 as seed ortholog is 100%.

Group of orthologs #1007. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:108

Q4Q7U1              	100.00%		D3BM06              	100.00%
Bootstrap support for Q4Q7U1 as seed ortholog is 100%.
Bootstrap support for D3BM06 as seed ortholog is 100%.

Group of orthologs #1008. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.pallidum:108

Q4QEM7              	100.00%		D3BNZ2              	100.00%
Bootstrap support for Q4QEM7 as seed ortholog is 100%.
Bootstrap support for D3BNZ2 as seed ortholog is 100%.

Group of orthologs #1009. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:107 P.pallidum:107

Q4Q7I8              	100.00%		D3BRL6              	100.00%
Bootstrap support for Q4Q7I8 as seed ortholog is 100%.
Bootstrap support for D3BRL6 as seed ortholog is 100%.

Group of orthologs #1010. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:29 P.pallidum:107

Q4QFK0              	100.00%		D3BMF1              	100.00%
Bootstrap support for Q4QFK0 as seed ortholog is 73%.
Alternative seed ortholog is Q4Q058 (29 bits away from this cluster)
Bootstrap support for D3BMF1 as seed ortholog is 100%.

Group of orthologs #1011. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:24

E9ACW4              	100.00%		D3B4B8              	100.00%
Bootstrap support for E9ACW4 as seed ortholog is 100%.
Bootstrap support for D3B4B8 as seed ortholog is 76%.

Group of orthologs #1012. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:106

Q4Q355              	100.00%		D3B151              	100.00%
Bootstrap support for Q4Q355 as seed ortholog is 100%.
Bootstrap support for D3B151 as seed ortholog is 100%.

Group of orthologs #1013. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:17 P.pallidum:106

Q4Q989              	100.00%		D3AY36              	100.00%
Bootstrap support for Q4Q989 as seed ortholog is 80%.
Bootstrap support for D3AY36 as seed ortholog is 100%.

Group of orthologs #1014. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:106

Q4Q9V2              	100.00%		D3B0K1              	100.00%
Bootstrap support for Q4Q9V2 as seed ortholog is 100%.
Bootstrap support for D3B0K1 as seed ortholog is 100%.

Group of orthologs #1015. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:106

Q4QCL9              	100.00%		D3B1C2              	100.00%
Bootstrap support for Q4QCL9 as seed ortholog is 100%.
Bootstrap support for D3B1C2 as seed ortholog is 100%.

Group of orthologs #1016. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:106

Q4Q1D2              	100.00%		D3BM86              	100.00%
Bootstrap support for Q4Q1D2 as seed ortholog is 100%.
Bootstrap support for D3BM86 as seed ortholog is 100%.

Group of orthologs #1017. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:106

Q4Q6Y3              	100.00%		D3BLD3              	100.00%
Bootstrap support for Q4Q6Y3 as seed ortholog is 100%.
Bootstrap support for D3BLD3 as seed ortholog is 100%.

Group of orthologs #1018. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.pallidum:106

Q4QHF4              	100.00%		D3BC02              	100.00%
Bootstrap support for Q4QHF4 as seed ortholog is 100%.
Bootstrap support for D3BC02 as seed ortholog is 100%.

Group of orthologs #1019. Best score 105 bits
Score difference with first non-orthologous sequence - L.major:105 P.pallidum:49

E9AF06              	100.00%		D3BFU7              	100.00%
                    	       		D3AWD8              	6.48%
Bootstrap support for E9AF06 as seed ortholog is 100%.
Bootstrap support for D3BFU7 as seed ortholog is 95%.

Group of orthologs #1020. Best score 105 bits
Score difference with first non-orthologous sequence - L.major:105 P.pallidum:105

Q4Q7P5              	100.00%		D3BP93              	100.00%
Bootstrap support for Q4Q7P5 as seed ortholog is 100%.
Bootstrap support for D3BP93 as seed ortholog is 100%.

Group of orthologs #1021. Best score 105 bits
Score difference with first non-orthologous sequence - L.major:3 P.pallidum:105

Q4QDW3              	100.00%		D3BQV7              	100.00%
Bootstrap support for Q4QDW3 as seed ortholog is 46%.
Alternative seed ortholog is Q4QDW4 (3 bits away from this cluster)
Bootstrap support for D3BQV7 as seed ortholog is 100%.

Group of orthologs #1022. Best score 105 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:27

Q4QAW7              	100.00%		D3BVF4              	100.00%
Bootstrap support for Q4QAW7 as seed ortholog is 95%.
Bootstrap support for D3BVF4 as seed ortholog is 71%.
Alternative seed ortholog is D3B3F2 (27 bits away from this cluster)

Group of orthologs #1023. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:12

Q4QHZ5              	100.00%		D3B0M0              	100.00%
                    	       		D3B169              	21.36%
                    	       		D3BEH0              	12.98%
                    	       		D3B5B7              	10.87%
                    	       		D3BQ77              	10.22%
                    	       		D3BMK5              	9.58%
                    	       		D3BSW5              	8.75%
Bootstrap support for Q4QHZ5 as seed ortholog is 100%.
Bootstrap support for D3B0M0 as seed ortholog is 86%.

Group of orthologs #1024. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:23 P.pallidum:104

E9ADC3              	100.00%		D3BCF4              	100.00%
                    	       		D3BUI9              	22.45%
Bootstrap support for E9ADC3 as seed ortholog is 61%.
Alternative seed ortholog is E9AEX0 (23 bits away from this cluster)
Bootstrap support for D3BCF4 as seed ortholog is 100%.

Group of orthologs #1025. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:104

E9ACF6              	100.00%		D3B9D0              	100.00%
Bootstrap support for E9ACF6 as seed ortholog is 100%.
Bootstrap support for D3B9D0 as seed ortholog is 100%.

Group of orthologs #1026. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:104

E9AF68              	100.00%		D3B8B3              	100.00%
Bootstrap support for E9AF68 as seed ortholog is 100%.
Bootstrap support for D3B8B3 as seed ortholog is 100%.

Group of orthologs #1027. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:104

Q4Q130              	100.00%		D3B9L7              	100.00%
Bootstrap support for Q4Q130 as seed ortholog is 100%.
Bootstrap support for D3B9L7 as seed ortholog is 100%.

Group of orthologs #1028. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:20 P.pallidum:104

Q4QFD4              	100.00%		D3AWF5              	100.00%
Bootstrap support for Q4QFD4 as seed ortholog is 75%.
Bootstrap support for D3AWF5 as seed ortholog is 100%.

Group of orthologs #1029. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:43

E9AF82              	100.00%		D3BK99              	100.00%
Bootstrap support for E9AF82 as seed ortholog is 100%.
Bootstrap support for D3BK99 as seed ortholog is 73%.
Alternative seed ortholog is D3B8Q0 (43 bits away from this cluster)

Group of orthologs #1030. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:104

Q4Q9E9              	100.00%		D3BCX2              	100.00%
Bootstrap support for Q4Q9E9 as seed ortholog is 100%.
Bootstrap support for D3BCX2 as seed ortholog is 100%.

Group of orthologs #1031. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:104

Q4Q4P1              	100.00%		D3BTI1              	100.00%
Bootstrap support for Q4Q4P1 as seed ortholog is 100%.
Bootstrap support for D3BTI1 as seed ortholog is 100%.

Group of orthologs #1032. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.pallidum:104

Q4QGA2              	100.00%		D3BQT7              	100.00%
Bootstrap support for Q4QGA2 as seed ortholog is 100%.
Bootstrap support for D3BQT7 as seed ortholog is 100%.

Group of orthologs #1033. Best score 103 bits
Score difference with first non-orthologous sequence - L.major:103 P.pallidum:47

Q4QHL1              	100.00%		D3B3P3              	100.00%
                    	       		D3AVL3              	5.25%
Bootstrap support for Q4QHL1 as seed ortholog is 100%.
Bootstrap support for D3B3P3 as seed ortholog is 93%.

Group of orthologs #1034. Best score 103 bits
Score difference with first non-orthologous sequence - L.major:103 P.pallidum:103

Q4Q9K0              	100.00%		D3B734              	100.00%
Bootstrap support for Q4Q9K0 as seed ortholog is 100%.
Bootstrap support for D3B734 as seed ortholog is 100%.

Group of orthologs #1035. Best score 103 bits
Score difference with first non-orthologous sequence - L.major:103 P.pallidum:103

Q4Q4P3              	100.00%		D3BH66              	100.00%
Bootstrap support for Q4Q4P3 as seed ortholog is 100%.
Bootstrap support for D3BH66 as seed ortholog is 100%.

Group of orthologs #1036. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:19 P.pallidum:102

E9AFM4              	100.00%		D3BAH8              	100.00%
                    	       		D3BAP8              	7.58%
Bootstrap support for E9AFM4 as seed ortholog is 70%.
Alternative seed ortholog is Q4Q094 (19 bits away from this cluster)
Bootstrap support for D3BAH8 as seed ortholog is 100%.

Group of orthologs #1037. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4QDY1              	100.00%		D3BG78              	100.00%
                    	       		D3B7C2              	5.45%
Bootstrap support for Q4QDY1 as seed ortholog is 100%.
Bootstrap support for D3BG78 as seed ortholog is 100%.

Group of orthologs #1038. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4QIT3              	100.00%		D3BBX5              	100.00%
                    	       		D3BT53              	45.91%
Bootstrap support for Q4QIT3 as seed ortholog is 100%.
Bootstrap support for D3BBX5 as seed ortholog is 100%.

Group of orthologs #1039. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:13 P.pallidum:102

Q4Q6R5              	100.00%		D3BRR6              	100.00%
Q4Q6R6              	100.00%		
Bootstrap support for Q4Q6R5 as seed ortholog is 6%.
Alternative seed ortholog is Q4QF62 (13 bits away from this cluster)
Bootstrap support for Q4Q6R6 as seed ortholog is 6%.
Alternative seed ortholog is Q4QF62 (13 bits away from this cluster)
Bootstrap support for D3BRR6 as seed ortholog is 100%.

Group of orthologs #1040. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4Q0X2              	100.00%		D3AYE2              	100.00%
Bootstrap support for Q4Q0X2 as seed ortholog is 100%.
Bootstrap support for D3AYE2 as seed ortholog is 100%.

Group of orthologs #1041. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:59 P.pallidum:102

E9AFS4              	100.00%		D3AZW3              	100.00%
Bootstrap support for E9AFS4 as seed ortholog is 86%.
Bootstrap support for D3AZW3 as seed ortholog is 100%.

Group of orthologs #1042. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

E9AEU8              	100.00%		D3B842              	100.00%
Bootstrap support for E9AEU8 as seed ortholog is 100%.
Bootstrap support for D3B842 as seed ortholog is 100%.

Group of orthologs #1043. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4Q9N3              	100.00%		D3B194              	100.00%
Bootstrap support for Q4Q9N3 as seed ortholog is 100%.
Bootstrap support for D3B194 as seed ortholog is 100%.

Group of orthologs #1044. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4Q5J4              	100.00%		D3B5J6              	100.00%
Bootstrap support for Q4Q5J4 as seed ortholog is 100%.
Bootstrap support for D3B5J6 as seed ortholog is 100%.

Group of orthologs #1045. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:29

E9AEL0              	100.00%		D3BQN3              	100.00%
Bootstrap support for E9AEL0 as seed ortholog is 100%.
Bootstrap support for D3BQN3 as seed ortholog is 82%.

Group of orthologs #1046. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

E9AFE0              	100.00%		D3BQ09              	100.00%
Bootstrap support for E9AFE0 as seed ortholog is 100%.
Bootstrap support for D3BQ09 as seed ortholog is 100%.

Group of orthologs #1047. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4Q7X2              	100.00%		D3BUW3              	100.00%
Bootstrap support for Q4Q7X2 as seed ortholog is 100%.
Bootstrap support for D3BUW3 as seed ortholog is 100%.

Group of orthologs #1048. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.pallidum:102

Q4QIY6              	100.00%		D3BV55              	100.00%
Bootstrap support for Q4QIY6 as seed ortholog is 100%.
Bootstrap support for D3BV55 as seed ortholog is 100%.

Group of orthologs #1049. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:33 P.pallidum:41

Q4Q2N8              	100.00%		D3BDG1              	100.00%
                    	       		D3BT03              	21.14%
                    	       		D3B3V9              	15.99%
                    	       		D3BR25              	10.85%
Bootstrap support for Q4Q2N8 as seed ortholog is 76%.
Bootstrap support for D3BDG1 as seed ortholog is 83%.

Group of orthologs #1050. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.pallidum:101

E9AEU2              	100.00%		D3BPR9              	100.00%
Q4QIK9              	20.79%		
Bootstrap support for E9AEU2 as seed ortholog is 100%.
Bootstrap support for D3BPR9 as seed ortholog is 100%.

Group of orthologs #1051. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.pallidum:101

Q4QGP0              	100.00%		D3AZF8              	100.00%
Bootstrap support for Q4QGP0 as seed ortholog is 100%.
Bootstrap support for D3AZF8 as seed ortholog is 100%.

Group of orthologs #1052. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:101

Q4QFM8              	100.00%		D3B3V6              	100.00%
Bootstrap support for Q4QFM8 as seed ortholog is 62%.
Alternative seed ortholog is Q4QHY4 (45 bits away from this cluster)
Bootstrap support for D3B3V6 as seed ortholog is 100%.

Group of orthologs #1053. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.pallidum:101

Q4QEG6              	100.00%		D3BCX0              	100.00%
Bootstrap support for Q4QEG6 as seed ortholog is 100%.
Bootstrap support for D3BCX0 as seed ortholog is 100%.

Group of orthologs #1054. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.pallidum:101

Q9U198              	100.00%		D3BU92              	100.00%
Bootstrap support for Q9U198 as seed ortholog is 100%.
Bootstrap support for D3BU92 as seed ortholog is 100%.

Group of orthologs #1055. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:7 P.pallidum:36

Q4QFQ7              	100.00%		D3BH68              	100.00%
                    	       		D3BKB0              	11.67%
                    	       		D3BU57              	10.07%
                    	       		D3B6V8              	9.61%
Bootstrap support for Q4QFQ7 as seed ortholog is 53%.
Alternative seed ortholog is E9ACA1 (7 bits away from this cluster)
Bootstrap support for D3BH68 as seed ortholog is 96%.

Group of orthologs #1056. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.pallidum:100

Q4Q7G9              	100.00%		D3BTH5              	100.00%
                    	       		D3B2G2              	5.40%
Bootstrap support for Q4Q7G9 as seed ortholog is 100%.
Bootstrap support for D3BTH5 as seed ortholog is 100%.

Group of orthologs #1057. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:17 P.pallidum:100

Q4Q222              	100.00%		D3B4H6              	100.00%
Bootstrap support for Q4Q222 as seed ortholog is 95%.
Bootstrap support for D3B4H6 as seed ortholog is 100%.

Group of orthologs #1058. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.pallidum:100

Q4QIB4              	100.00%		D3AVU9              	100.00%
Bootstrap support for Q4QIB4 as seed ortholog is 100%.
Bootstrap support for D3AVU9 as seed ortholog is 100%.

Group of orthologs #1059. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.pallidum:100

E9AF78              	100.00%		D3BMH3              	100.00%
Bootstrap support for E9AF78 as seed ortholog is 100%.
Bootstrap support for D3BMH3 as seed ortholog is 100%.

Group of orthologs #1060. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.pallidum:100

Q4QBH3              	100.00%		D3BCW0              	100.00%
Bootstrap support for Q4QBH3 as seed ortholog is 100%.
Bootstrap support for D3BCW0 as seed ortholog is 100%.

Group of orthologs #1061. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.pallidum:100

Q4Q9L9              	100.00%		D3BV18              	100.00%
Bootstrap support for Q4Q9L9 as seed ortholog is 100%.
Bootstrap support for D3BV18 as seed ortholog is 100%.

Group of orthologs #1062. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.pallidum:99

E9AC85              	100.00%		D3B6B2              	100.00%
Bootstrap support for E9AC85 as seed ortholog is 100%.
Bootstrap support for D3B6B2 as seed ortholog is 100%.

Group of orthologs #1063. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.pallidum:99

Q4Q996              	100.00%		D3B2W8              	100.00%
Bootstrap support for Q4Q996 as seed ortholog is 100%.
Bootstrap support for D3B2W8 as seed ortholog is 100%.

Group of orthologs #1064. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.pallidum:99

Q4Q504              	100.00%		D3BK76              	100.00%
Bootstrap support for Q4Q504 as seed ortholog is 100%.
Bootstrap support for D3BK76 as seed ortholog is 100%.

Group of orthologs #1065. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:19 P.pallidum:99

Q4Q231              	100.00%		D3BTW3              	100.00%
Bootstrap support for Q4Q231 as seed ortholog is 69%.
Alternative seed ortholog is Q4Q391 (19 bits away from this cluster)
Bootstrap support for D3BTW3 as seed ortholog is 100%.

Group of orthologs #1066. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.pallidum:99

Q95ZB8              	100.00%		D3BST7              	100.00%
Bootstrap support for Q95ZB8 as seed ortholog is 100%.
Bootstrap support for D3BST7 as seed ortholog is 100%.

Group of orthologs #1067. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.pallidum:97

Q4Q7Q1              	100.00%		D3B509              	100.00%
                    	       		D3BC73              	8.19%
Bootstrap support for Q4Q7Q1 as seed ortholog is 100%.
Bootstrap support for D3B509 as seed ortholog is 100%.

Group of orthologs #1068. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.pallidum:97

Q4QEW1              	100.00%		D3BLP5              	100.00%
                    	       		D3B996              	20.59%
Bootstrap support for Q4QEW1 as seed ortholog is 100%.
Bootstrap support for D3BLP5 as seed ortholog is 100%.

Group of orthologs #1069. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.pallidum:97

E9AFZ4              	100.00%		D3BNU2              	100.00%
Bootstrap support for E9AFZ4 as seed ortholog is 100%.
Bootstrap support for D3BNU2 as seed ortholog is 100%.

Group of orthologs #1070. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.pallidum:97

Q4Q0P5              	100.00%		D3BNN1              	100.00%
Bootstrap support for Q4Q0P5 as seed ortholog is 100%.
Bootstrap support for D3BNN1 as seed ortholog is 100%.

Group of orthologs #1071. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:16 P.pallidum:25

Q4QIX6              	100.00%		D3BCF2              	100.00%
Bootstrap support for Q4QIX6 as seed ortholog is 69%.
Alternative seed ortholog is Q4QB81 (16 bits away from this cluster)
Bootstrap support for D3BCF2 as seed ortholog is 73%.
Alternative seed ortholog is D3B752 (25 bits away from this cluster)

Group of orthologs #1072. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:96

E9AC00              	100.00%		D3AXK3              	100.00%
Bootstrap support for E9AC00 as seed ortholog is 68%.
Alternative seed ortholog is Q4QJH1 (9 bits away from this cluster)
Bootstrap support for D3AXK3 as seed ortholog is 100%.

Group of orthologs #1073. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:33 P.pallidum:32

E9ADE1              	100.00%		D3B053              	100.00%
Bootstrap support for E9ADE1 as seed ortholog is 90%.
Bootstrap support for D3B053 as seed ortholog is 81%.

Group of orthologs #1074. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:96

Q4Q4D5              	100.00%		D3AXV8              	100.00%
Bootstrap support for Q4Q4D5 as seed ortholog is 100%.
Bootstrap support for D3AXV8 as seed ortholog is 100%.

Group of orthologs #1075. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:96

Q4Q768              	100.00%		D3B3Z8              	100.00%
Bootstrap support for Q4Q768 as seed ortholog is 100%.
Bootstrap support for D3B3Z8 as seed ortholog is 100%.

Group of orthologs #1076. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:96

Q4QDZ6              	100.00%		D3AYP4              	100.00%
Bootstrap support for Q4QDZ6 as seed ortholog is 100%.
Bootstrap support for D3AYP4 as seed ortholog is 100%.

Group of orthologs #1077. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:96

Q4Q5X8              	100.00%		D3BE75              	100.00%
Bootstrap support for Q4Q5X8 as seed ortholog is 100%.
Bootstrap support for D3BE75 as seed ortholog is 100%.

Group of orthologs #1078. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:6

Q4Q3A0              	100.00%		D3BRL8              	100.00%
Bootstrap support for Q4Q3A0 as seed ortholog is 100%.
Bootstrap support for D3BRL8 as seed ortholog is 55%.
Alternative seed ortholog is D3BE73 (6 bits away from this cluster)

Group of orthologs #1079. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:96

Q4Q0G9              	100.00%		D3BU82              	100.00%
Bootstrap support for Q4Q0G9 as seed ortholog is 100%.
Bootstrap support for D3BU82 as seed ortholog is 100%.

Group of orthologs #1080. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:96 P.pallidum:96

Q4QFI7              	100.00%		D3BNQ6              	100.00%
Bootstrap support for Q4QFI7 as seed ortholog is 100%.
Bootstrap support for D3BNQ6 as seed ortholog is 100%.

Group of orthologs #1081. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:95 P.pallidum:95

Q4Q7V8              	100.00%		D3BF54              	100.00%
Q4QGZ4              	10.89%		D3BTR9              	39.79%
Q4QGZ5              	6.49%		D3BNA9              	30.40%
                    	       		D3BEV2              	23.49%
                    	       		D3BEV3              	17.77%
                    	       		D3BEV1              	15.71%
Bootstrap support for Q4Q7V8 as seed ortholog is 100%.
Bootstrap support for D3BF54 as seed ortholog is 100%.

Group of orthologs #1082. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:33 P.pallidum:36

E9ACV5              	100.00%		D3BDR5              	100.00%
                    	       		D3BV49              	12.62%
Bootstrap support for E9ACV5 as seed ortholog is 86%.
Bootstrap support for D3BDR5 as seed ortholog is 91%.

Group of orthologs #1083. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:18 P.pallidum:9

Q4QAC1              	100.00%		D3B556              	100.00%
                    	       		D3BTW1              	16.87%
Bootstrap support for Q4QAC1 as seed ortholog is 67%.
Alternative seed ortholog is Q4QD23 (18 bits away from this cluster)
Bootstrap support for D3B556 as seed ortholog is 57%.
Alternative seed ortholog is D3BB95 (9 bits away from this cluster)

Group of orthologs #1084. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:95 P.pallidum:95

Q4QAY3              	100.00%		D3B3L3              	100.00%
Bootstrap support for Q4QAY3 as seed ortholog is 100%.
Bootstrap support for D3B3L3 as seed ortholog is 100%.

Group of orthologs #1085. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:95 P.pallidum:95

Q4Q266              	100.00%		D3BTE5              	100.00%
Bootstrap support for Q4Q266 as seed ortholog is 100%.
Bootstrap support for D3BTE5 as seed ortholog is 100%.

Group of orthologs #1086. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:95 P.pallidum:95

Q4Q5S1              	100.00%		D3BRY9              	100.00%
Bootstrap support for Q4Q5S1 as seed ortholog is 100%.
Bootstrap support for D3BRY9 as seed ortholog is 100%.

Group of orthologs #1087. Best score 94 bits
Score difference with first non-orthologous sequence - L.major:94 P.pallidum:94

Q4QJ74              	100.00%		D3BQA8              	100.00%
Q4QCQ8              	10.71%		
Q4QCQ9              	10.71%		
Bootstrap support for Q4QJ74 as seed ortholog is 100%.
Bootstrap support for D3BQA8 as seed ortholog is 100%.

Group of orthologs #1088. Best score 94 bits
Score difference with first non-orthologous sequence - L.major:94 P.pallidum:94

E9AFB7              	100.00%		D3AVJ2              	100.00%
Bootstrap support for E9AFB7 as seed ortholog is 100%.
Bootstrap support for D3AVJ2 as seed ortholog is 100%.

Group of orthologs #1089. Best score 94 bits
Score difference with first non-orthologous sequence - L.major:94 P.pallidum:94

Q4QAS1              	100.00%		D3BFC2              	100.00%
Bootstrap support for Q4QAS1 as seed ortholog is 100%.
Bootstrap support for D3BFC2 as seed ortholog is 100%.

Group of orthologs #1090. Best score 94 bits
Score difference with first non-orthologous sequence - L.major:94 P.pallidum:94

Q4Q7K2              	100.00%		D3BNZ1              	100.00%
Bootstrap support for Q4Q7K2 as seed ortholog is 100%.
Bootstrap support for D3BNZ1 as seed ortholog is 100%.

Group of orthologs #1091. Best score 94 bits
Score difference with first non-orthologous sequence - L.major:94 P.pallidum:94

Q4QIC2              	100.00%		D3BI32              	100.00%
Bootstrap support for Q4QIC2 as seed ortholog is 100%.
Bootstrap support for D3BI32 as seed ortholog is 100%.

Group of orthologs #1092. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:34 P.pallidum:93

E9AFS7              	100.00%		D3B9P1              	100.00%
Bootstrap support for E9AFS7 as seed ortholog is 93%.
Bootstrap support for D3B9P1 as seed ortholog is 100%.

Group of orthologs #1093. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:93 P.pallidum:93

Q4Q253              	100.00%		D3BGB9              	100.00%
Bootstrap support for Q4Q253 as seed ortholog is 100%.
Bootstrap support for D3BGB9 as seed ortholog is 100%.

Group of orthologs #1094. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:93 P.pallidum:93

Q4Q140              	100.00%		D3BP72              	100.00%
Bootstrap support for Q4Q140 as seed ortholog is 100%.
Bootstrap support for D3BP72 as seed ortholog is 100%.

Group of orthologs #1095. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:7 P.pallidum:93

Q4Q2Y0              	100.00%		D3BRH7              	100.00%
Bootstrap support for Q4Q2Y0 as seed ortholog is 56%.
Alternative seed ortholog is Q4Q9C8 (7 bits away from this cluster)
Bootstrap support for D3BRH7 as seed ortholog is 100%.

Group of orthologs #1096. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:93 P.pallidum:11

Q4QDL3              	100.00%		D3BU31              	100.00%
Bootstrap support for Q4QDL3 as seed ortholog is 100%.
Bootstrap support for D3BU31 as seed ortholog is 65%.
Alternative seed ortholog is D3AZU2 (11 bits away from this cluster)

Group of orthologs #1097. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:92

E9AFT6              	100.00%		D3AXS4              	100.00%
                    	       		D3BT90              	28.95%
Bootstrap support for E9AFT6 as seed ortholog is 100%.
Bootstrap support for D3AXS4 as seed ortholog is 100%.

Group of orthologs #1098. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:92

Q4QF39              	100.00%		D3B8I8              	100.00%
                    	       		D3B838              	5.25%
Bootstrap support for Q4QF39 as seed ortholog is 100%.
Bootstrap support for D3B8I8 as seed ortholog is 100%.

Group of orthologs #1099. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:92

Q4QE26              	100.00%		D3BTK9              	100.00%
                    	       		D3B5E6              	19.73%
Bootstrap support for Q4QE26 as seed ortholog is 100%.
Bootstrap support for D3BTK9 as seed ortholog is 100%.

Group of orthologs #1100. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:92

Q4Q2R5              	100.00%		D3AWZ9              	100.00%
Bootstrap support for Q4Q2R5 as seed ortholog is 100%.
Bootstrap support for D3AWZ9 as seed ortholog is 100%.

Group of orthologs #1101. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:92

Q4Q5W9              	100.00%		D3AXR3              	100.00%
Bootstrap support for Q4Q5W9 as seed ortholog is 100%.
Bootstrap support for D3AXR3 as seed ortholog is 100%.

Group of orthologs #1102. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.pallidum:92

Q4QBW3              	100.00%		D3B4P8              	100.00%
Bootstrap support for Q4QBW3 as seed ortholog is 100%.
Bootstrap support for D3B4P8 as seed ortholog is 100%.

Group of orthologs #1103. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:91

E9AE33              	100.00%		D3BTM8              	100.00%
E9AE34              	100.00%		
E9AE35              	100.00%		
Q4QCA4              	100.00%		
Bootstrap support for E9AE33 as seed ortholog is 100%.
Bootstrap support for E9AE34 as seed ortholog is 100%.
Bootstrap support for E9AE35 as seed ortholog is 100%.
Bootstrap support for Q4QCA4 as seed ortholog is 100%.
Bootstrap support for D3BTM8 as seed ortholog is 100%.

Group of orthologs #1104. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:91

E9AEE8              	100.00%		D3BTV9              	100.00%
Q4Q2R6              	100.00%		
Bootstrap support for E9AEE8 as seed ortholog is 100%.
Bootstrap support for Q4Q2R6 as seed ortholog is 100%.
Bootstrap support for D3BTV9 as seed ortholog is 100%.

Group of orthologs #1105. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:91

Q4Q8V5              	100.00%		D3AYW2              	100.00%
Bootstrap support for Q4Q8V5 as seed ortholog is 100%.
Bootstrap support for D3AYW2 as seed ortholog is 100%.

Group of orthologs #1106. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:91

Q4Q1Q1              	100.00%		D3BE20              	100.00%
Bootstrap support for Q4Q1Q1 as seed ortholog is 100%.
Bootstrap support for D3BE20 as seed ortholog is 100%.

Group of orthologs #1107. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:91

Q4QDE2              	100.00%		D3B6U5              	100.00%
Bootstrap support for Q4QDE2 as seed ortholog is 100%.
Bootstrap support for D3B6U5 as seed ortholog is 100%.

Group of orthologs #1108. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.pallidum:91

Q4QES7              	100.00%		D3B660              	100.00%
Bootstrap support for Q4QES7 as seed ortholog is 100%.
Bootstrap support for D3B660 as seed ortholog is 100%.

Group of orthologs #1109. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:90

Q4QE23              	100.00%		D3BJA5              	100.00%
Q4QE24              	22.28%		D3BEK7              	16.02%
Q4QE25              	21.78%		D3AXB2              	7.13%
E9ADZ5              	15.41%		D3B233              	5.26%
                    	       		D3AXK1              	5.13%
Bootstrap support for Q4QE23 as seed ortholog is 56%.
Alternative seed ortholog is Q4Q285 (9 bits away from this cluster)
Bootstrap support for D3BJA5 as seed ortholog is 100%.

Group of orthologs #1110. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

E9ACI8              	100.00%		D3BDB6              	100.00%
                    	       		D3B7S8              	5.43%
Bootstrap support for E9ACI8 as seed ortholog is 100%.
Bootstrap support for D3BDB6 as seed ortholog is 100%.

Group of orthologs #1111. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

Q4QBP6              	100.00%		D3B1Z1              	100.00%
                    	       		D3B9G4              	6.11%
Bootstrap support for Q4QBP6 as seed ortholog is 100%.
Bootstrap support for D3B1Z1 as seed ortholog is 100%.

Group of orthologs #1112. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:11

E9ACN7              	100.00%		D3B410              	100.00%
Bootstrap support for E9ACN7 as seed ortholog is 100%.
Bootstrap support for D3B410 as seed ortholog is 30%.
Alternative seed ortholog is D3B9X2 (11 bits away from this cluster)

Group of orthologs #1113. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

E9AF35              	100.00%		D3BMA2              	100.00%
Bootstrap support for E9AF35 as seed ortholog is 100%.
Bootstrap support for D3BMA2 as seed ortholog is 100%.

Group of orthologs #1114. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:90

Q4QI35              	100.00%		D3B5B5              	100.00%
Bootstrap support for Q4QI35 as seed ortholog is 95%.
Bootstrap support for D3B5B5 as seed ortholog is 100%.

Group of orthologs #1115. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

Q4QG97              	100.00%		D3BD80              	100.00%
Bootstrap support for Q4QG97 as seed ortholog is 100%.
Bootstrap support for D3BD80 as seed ortholog is 100%.

Group of orthologs #1116. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

Q4Q0C3              	100.00%		D3BVR4              	100.00%
Bootstrap support for Q4Q0C3 as seed ortholog is 100%.
Bootstrap support for D3BVR4 as seed ortholog is 100%.

Group of orthologs #1117. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

Q4QIQ6              	100.00%		D3BF23              	100.00%
Bootstrap support for Q4QIQ6 as seed ortholog is 100%.
Bootstrap support for D3BF23 as seed ortholog is 100%.

Group of orthologs #1118. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.pallidum:90

Q4QHE1              	100.00%		D3BQ53              	100.00%
Bootstrap support for Q4QHE1 as seed ortholog is 100%.
Bootstrap support for D3BQ53 as seed ortholog is 100%.

Group of orthologs #1119. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:26 P.pallidum:35

E9ACE1              	100.00%		D3BEF7              	100.00%
                    	       		D3BBA4              	7.21%
Bootstrap support for E9ACE1 as seed ortholog is 75%.
Bootstrap support for D3BEF7 as seed ortholog is 85%.

Group of orthologs #1120. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:89

Q4Q1B1              	100.00%		D3B482              	100.00%
Bootstrap support for Q4Q1B1 as seed ortholog is 100%.
Bootstrap support for D3B482 as seed ortholog is 100%.

Group of orthologs #1121. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:89

Q4Q3T4              	100.00%		D3B4U2              	100.00%
Bootstrap support for Q4Q3T4 as seed ortholog is 100%.
Bootstrap support for D3B4U2 as seed ortholog is 100%.

Group of orthologs #1122. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:89

Q4Q6L1              	100.00%		D3B526              	100.00%
Bootstrap support for Q4Q6L1 as seed ortholog is 100%.
Bootstrap support for D3B526 as seed ortholog is 100%.

Group of orthologs #1123. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:89

Q4Q8E3              	100.00%		D3BH33              	100.00%
Bootstrap support for Q4Q8E3 as seed ortholog is 100%.
Bootstrap support for D3BH33 as seed ortholog is 100%.

Group of orthologs #1124. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:89 P.pallidum:89

Q4QEH6              	100.00%		D3BDP9              	100.00%
Bootstrap support for Q4QEH6 as seed ortholog is 100%.
Bootstrap support for D3BDP9 as seed ortholog is 100%.

Group of orthologs #1125. Best score 88 bits
Score difference with first non-orthologous sequence - L.major:88 P.pallidum:6

E9ACY6              	100.00%		D3BR81              	100.00%
                    	       		D3BR82              	88.61%
                    	       		D3BBW1              	56.38%
                    	       		D3BR59              	35.42%
                    	       		D3B1Z2              	29.16%
                    	       		D3B1H8              	28.02%
                    	       		D3BC35              	26.42%
                    	       		D3BC34              	26.31%
                    	       		D3BSP2              	25.40%
                    	       		D3B4T3              	25.06%
                    	       		D3B333              	23.80%
                    	       		D3BSP5              	23.01%
                    	       		D3B5Y3              	21.64%
                    	       		D3BVQ0              	21.53%
                    	       		D3AZN6              	19.25%
                    	       		D3B5Y4              	13.33%
                    	       		D3AZI7              	8.31%
Bootstrap support for E9ACY6 as seed ortholog is 100%.
Bootstrap support for D3BR81 as seed ortholog is 59%.
Alternative seed ortholog is D3BHM8 (6 bits away from this cluster)

Group of orthologs #1126. Best score 88 bits
Score difference with first non-orthologous sequence - L.major:88 P.pallidum:88

E9AFQ0              	100.00%		D3BU70              	100.00%
                    	       		D3BB96              	7.84%
Bootstrap support for E9AFQ0 as seed ortholog is 100%.
Bootstrap support for D3BU70 as seed ortholog is 100%.

Group of orthologs #1127. Best score 88 bits
Score difference with first non-orthologous sequence - L.major:88 P.pallidum:88

Q4Q8R7              	100.00%		D3BN28              	100.00%
Bootstrap support for Q4Q8R7 as seed ortholog is 100%.
Bootstrap support for D3BN28 as seed ortholog is 100%.

Group of orthologs #1128. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:87

E9AFA5              	100.00%		D3BFK8              	100.00%
E9AFA2              	18.41%		
E9AFA6              	13.90%		
Bootstrap support for E9AFA5 as seed ortholog is 100%.
Bootstrap support for D3BFK8 as seed ortholog is 100%.

Group of orthologs #1129. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:1 P.pallidum:87

Q4Q7C6              	100.00%		D3BQ72              	100.00%
                    	       		D3B9K5              	37.98%
                    	       		D3BL18              	10.83%
Bootstrap support for Q4Q7C6 as seed ortholog is 47%.
Alternative seed ortholog is E9AFI0 (1 bits away from this cluster)
Bootstrap support for D3BQ72 as seed ortholog is 100%.

Group of orthologs #1130. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:87

E9AF95              	100.00%		D3BFR6              	100.00%
                    	       		D3BRT3              	19.35%
Bootstrap support for E9AF95 as seed ortholog is 100%.
Bootstrap support for D3BFR6 as seed ortholog is 100%.

Group of orthologs #1131. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:87

Q53HX3              	100.00%		D3B4B0              	100.00%
                    	       		D3B458              	45.18%
Bootstrap support for Q53HX3 as seed ortholog is 100%.
Bootstrap support for D3B4B0 as seed ortholog is 100%.

Group of orthologs #1132. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:87

Q4QG08              	100.00%		D3BAA5              	100.00%
Q4QG09              	31.12%		
Bootstrap support for Q4QG08 as seed ortholog is 100%.
Bootstrap support for D3BAA5 as seed ortholog is 100%.

Group of orthologs #1133. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:87

E9AFZ9              	100.00%		D3B5U8              	100.00%
Bootstrap support for E9AFZ9 as seed ortholog is 100%.
Bootstrap support for D3B5U8 as seed ortholog is 100%.

Group of orthologs #1134. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:23 P.pallidum:25

Q4Q3K6              	100.00%		D3B6S0              	100.00%
Bootstrap support for Q4Q3K6 as seed ortholog is 71%.
Alternative seed ortholog is Q4QBR6 (23 bits away from this cluster)
Bootstrap support for D3B6S0 as seed ortholog is 78%.

Group of orthologs #1135. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:28

Q4QF06              	100.00%		D3B6S2              	100.00%
Bootstrap support for Q4QF06 as seed ortholog is 100%.
Bootstrap support for D3B6S2 as seed ortholog is 94%.

Group of orthologs #1136. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.pallidum:87

E9AFS9              	100.00%		D3BR37              	100.00%
Bootstrap support for E9AFS9 as seed ortholog is 100%.
Bootstrap support for D3BR37 as seed ortholog is 100%.

Group of orthologs #1137. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:86

Q4Q2I1              	100.00%		D3BCI4              	100.00%
                    	       		D3BLI6              	17.28%
Bootstrap support for Q4Q2I1 as seed ortholog is 100%.
Bootstrap support for D3BCI4 as seed ortholog is 100%.

Group of orthologs #1138. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:86

Q4QD58              	100.00%		D3BGY8              	100.00%
Q4Q726              	19.61%		
Bootstrap support for Q4QD58 as seed ortholog is 100%.
Bootstrap support for D3BGY8 as seed ortholog is 100%.

Group of orthologs #1139. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:3 P.pallidum:86

Q4Q2N5              	100.00%		D3AWU0              	100.00%
Bootstrap support for Q4Q2N5 as seed ortholog is 54%.
Alternative seed ortholog is Q4Q241 (3 bits away from this cluster)
Bootstrap support for D3AWU0 as seed ortholog is 100%.

Group of orthologs #1140. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:86

E9AFU9              	100.00%		D3B1V3              	100.00%
Bootstrap support for E9AFU9 as seed ortholog is 100%.
Bootstrap support for D3B1V3 as seed ortholog is 100%.

Group of orthologs #1141. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:29

Q4Q6U2              	100.00%		D3B0U5              	100.00%
Bootstrap support for Q4Q6U2 as seed ortholog is 100%.
Bootstrap support for D3B0U5 as seed ortholog is 96%.

Group of orthologs #1142. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:44

Q4Q734              	100.00%		D3B5S1              	100.00%
Bootstrap support for Q4Q734 as seed ortholog is 100%.
Bootstrap support for D3B5S1 as seed ortholog is 90%.

Group of orthologs #1143. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:2

Q4Q6E9              	100.00%		D3BE02              	100.00%
Bootstrap support for Q4Q6E9 as seed ortholog is 100%.
Bootstrap support for D3BE02 as seed ortholog is 54%.
Alternative seed ortholog is D3BVE5 (2 bits away from this cluster)

Group of orthologs #1144. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:34

Q4Q9Z3              	100.00%		D3BGA8              	100.00%
Bootstrap support for Q4Q9Z3 as seed ortholog is 100%.
Bootstrap support for D3BGA8 as seed ortholog is 76%.

Group of orthologs #1145. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:86

Q4Q2T7              	100.00%		D3BN30              	100.00%
Bootstrap support for Q4Q2T7 as seed ortholog is 100%.
Bootstrap support for D3BN30 as seed ortholog is 100%.

Group of orthologs #1146. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.pallidum:86

Q4Q1C7              	100.00%		D3BTZ3              	100.00%
Bootstrap support for Q4Q1C7 as seed ortholog is 100%.
Bootstrap support for D3BTZ3 as seed ortholog is 100%.

Group of orthologs #1147. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:10 P.pallidum:86

Q4Q2G0              	100.00%		D3BTN8              	100.00%
Bootstrap support for Q4Q2G0 as seed ortholog is 64%.
Alternative seed ortholog is Q4Q271 (10 bits away from this cluster)
Bootstrap support for D3BTN8 as seed ortholog is 100%.

Group of orthologs #1148. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:85 P.pallidum:85

Q4Q2R1              	100.00%		D3AVN0              	100.00%
Bootstrap support for Q4Q2R1 as seed ortholog is 100%.
Bootstrap support for D3AVN0 as seed ortholog is 100%.

Group of orthologs #1149. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:85 P.pallidum:85

Q4Q2E3              	100.00%		D3BR79              	100.00%
Bootstrap support for Q4Q2E3 as seed ortholog is 100%.
Bootstrap support for D3BR79 as seed ortholog is 100%.

Group of orthologs #1150. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:1

Q4Q2L1              	100.00%		D3BHN0              	100.00%
                    	       		D3B1N0              	32.72%
                    	       		D3BDA4              	18.03%
                    	       		D3BRS5              	17.22%
                    	       		D3BGN7              	15.50%
                    	       		D3AZN7              	14.47%
Bootstrap support for Q4Q2L1 as seed ortholog is 100%.
Bootstrap support for D3BHN0 as seed ortholog is 49%.
Alternative seed ortholog is D3BHM8 (1 bits away from this cluster)

Group of orthologs #1151. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:4 P.pallidum:84

Q4Q2F7              	100.00%		D3BRS7              	100.00%
Q4Q538              	100.00%		D3BQ27              	100.00%
Q4QBK5              	25.80%		D3B667              	23.16%
Bootstrap support for Q4Q2F7 as seed ortholog is 53%.
Alternative seed ortholog is Q4Q6R2 (4 bits away from this cluster)
Bootstrap support for Q4Q538 as seed ortholog is 56%.
Alternative seed ortholog is Q4Q6R2 (4 bits away from this cluster)
Bootstrap support for D3BRS7 as seed ortholog is 100%.
Bootstrap support for D3BQ27 as seed ortholog is 100%.

Group of orthologs #1152. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:24 P.pallidum:84

E9AFI4              	100.00%		D3AYG6              	100.00%
                    	       		D3BQK6              	17.20%
Bootstrap support for E9AFI4 as seed ortholog is 68%.
Alternative seed ortholog is Q4QCL7 (24 bits away from this cluster)
Bootstrap support for D3AYG6 as seed ortholog is 100%.

Group of orthologs #1153. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

Q4QIQ0              	100.00%		D3AZX2              	100.00%
Q4QIP9              	49.57%		
Bootstrap support for Q4QIQ0 as seed ortholog is 100%.
Bootstrap support for D3AZX2 as seed ortholog is 100%.

Group of orthologs #1154. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

Q4Q270              	100.00%		D3B334              	100.00%
Bootstrap support for Q4Q270 as seed ortholog is 100%.
Bootstrap support for D3B334 as seed ortholog is 100%.

Group of orthologs #1155. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

Q4QFY6              	100.00%		D3B4U0              	100.00%
Bootstrap support for Q4QFY6 as seed ortholog is 100%.
Bootstrap support for D3B4U0 as seed ortholog is 100%.

Group of orthologs #1156. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

E9ADZ0              	100.00%		D3BNC7              	100.00%
Bootstrap support for E9ADZ0 as seed ortholog is 100%.
Bootstrap support for D3BNC7 as seed ortholog is 100%.

Group of orthologs #1157. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

Q4QAV1              	100.00%		D3BGF4              	100.00%
Bootstrap support for Q4QAV1 as seed ortholog is 100%.
Bootstrap support for D3BGF4 as seed ortholog is 100%.

Group of orthologs #1158. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

Q4QB22              	100.00%		D3BIS6              	100.00%
Bootstrap support for Q4QB22 as seed ortholog is 100%.
Bootstrap support for D3BIS6 as seed ortholog is 100%.

Group of orthologs #1159. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.pallidum:84

Q4QI41              	100.00%		D3BN40              	100.00%
Bootstrap support for Q4QI41 as seed ortholog is 100%.
Bootstrap support for D3BN40 as seed ortholog is 100%.

Group of orthologs #1160. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:37 P.pallidum:84

Q4QAW4              	100.00%		D3BUZ0              	100.00%
Bootstrap support for Q4QAW4 as seed ortholog is 89%.
Bootstrap support for D3BUZ0 as seed ortholog is 100%.

Group of orthologs #1161. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

Q4Q752              	100.00%		D3B2K3              	100.00%
Bootstrap support for Q4Q752 as seed ortholog is 100%.
Bootstrap support for D3B2K3 as seed ortholog is 100%.

Group of orthologs #1162. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

E9ADE3              	100.00%		D3BLX9              	100.00%
Bootstrap support for E9ADE3 as seed ortholog is 100%.
Bootstrap support for D3BLX9 as seed ortholog is 100%.

Group of orthologs #1163. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

E9AF24              	100.00%		D3BP95              	100.00%
Bootstrap support for E9AF24 as seed ortholog is 100%.
Bootstrap support for D3BP95 as seed ortholog is 100%.

Group of orthologs #1164. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

Q4Q994              	100.00%		D3BG08              	100.00%
Bootstrap support for Q4Q994 as seed ortholog is 100%.
Bootstrap support for D3BG08 as seed ortholog is 100%.

Group of orthologs #1165. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

Q4QBX1              	100.00%		D3BF52              	100.00%
Bootstrap support for Q4QBX1 as seed ortholog is 100%.
Bootstrap support for D3BF52 as seed ortholog is 100%.

Group of orthologs #1166. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

Q4QJ82              	100.00%		D3BEE9              	100.00%
Bootstrap support for Q4QJ82 as seed ortholog is 100%.
Bootstrap support for D3BEE9 as seed ortholog is 100%.

Group of orthologs #1167. Best score 83 bits
Score difference with first non-orthologous sequence - L.major:83 P.pallidum:83

Q4QI00              	100.00%		D3BN47              	100.00%
Bootstrap support for Q4QI00 as seed ortholog is 100%.
Bootstrap support for D3BN47 as seed ortholog is 100%.

Group of orthologs #1168. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q5N1              	100.00%		D3B3P0              	100.00%
                    	       		D3BLB6              	62.92%
                    	       		D3B642              	41.01%
                    	       		D3BLB5              	31.46%
Bootstrap support for Q4Q5N1 as seed ortholog is 100%.
Bootstrap support for D3B3P0 as seed ortholog is 100%.

Group of orthologs #1169. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q6W9              	100.00%		D3AYT9              	100.00%
Q4Q7S8              	5.85%		
Bootstrap support for Q4Q6W9 as seed ortholog is 100%.
Bootstrap support for D3AYT9 as seed ortholog is 100%.

Group of orthologs #1170. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:17

Q4QF16              	100.00%		D3BLX7              	100.00%
                    	       		D3BLX8              	22.34%
Bootstrap support for Q4QF16 as seed ortholog is 100%.
Bootstrap support for D3BLX7 as seed ortholog is 68%.
Alternative seed ortholog is D3BDB7 (17 bits away from this cluster)

Group of orthologs #1171. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q884              	100.00%		D3AZR0              	100.00%
Bootstrap support for Q4Q884 as seed ortholog is 100%.
Bootstrap support for D3AZR0 as seed ortholog is 100%.

Group of orthologs #1172. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q6Y6              	100.00%		D3B418              	100.00%
Bootstrap support for Q4Q6Y6 as seed ortholog is 100%.
Bootstrap support for D3B418 as seed ortholog is 100%.

Group of orthologs #1173. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q4F2              	100.00%		D3BEZ7              	100.00%
Bootstrap support for Q4Q4F2 as seed ortholog is 100%.
Bootstrap support for D3BEZ7 as seed ortholog is 100%.

Group of orthologs #1174. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4QAN2              	100.00%		D3BF45              	100.00%
Bootstrap support for Q4QAN2 as seed ortholog is 100%.
Bootstrap support for D3BF45 as seed ortholog is 100%.

Group of orthologs #1175. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q9C3              	100.00%		D3BH80              	100.00%
Bootstrap support for Q4Q9C3 as seed ortholog is 100%.
Bootstrap support for D3BH80 as seed ortholog is 100%.

Group of orthologs #1176. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:17 P.pallidum:82

Q4QBJ4              	100.00%		D3BFH1              	100.00%
Bootstrap support for Q4QBJ4 as seed ortholog is 67%.
Alternative seed ortholog is Q4QE13 (17 bits away from this cluster)
Bootstrap support for D3BFH1 as seed ortholog is 100%.

Group of orthologs #1177. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4Q6S8              	100.00%		D3BU60              	100.00%
Bootstrap support for Q4Q6S8 as seed ortholog is 100%.
Bootstrap support for D3BU60 as seed ortholog is 100%.

Group of orthologs #1178. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.pallidum:82

Q4QHL3              	100.00%		D3BUT5              	100.00%
Bootstrap support for Q4QHL3 as seed ortholog is 100%.
Bootstrap support for D3BUT5 as seed ortholog is 100%.

Group of orthologs #1179. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4Q361              	100.00%		D3BRT8              	100.00%
Q4Q362              	80.07%		D3BI20              	5.45%
Bootstrap support for Q4Q361 as seed ortholog is 100%.
Bootstrap support for D3BRT8 as seed ortholog is 100%.

Group of orthologs #1180. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4Q6L2              	100.00%		D3AY37              	100.00%
                    	       		D3BV99              	6.65%
Bootstrap support for Q4Q6L2 as seed ortholog is 100%.
Bootstrap support for D3AY37 as seed ortholog is 100%.

Group of orthologs #1181. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4QD54              	100.00%		D3AY65              	100.00%
Bootstrap support for Q4QD54 as seed ortholog is 100%.
Bootstrap support for D3AY65 as seed ortholog is 100%.

Group of orthologs #1182. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4QEY5              	100.00%		D3AYG2              	100.00%
Bootstrap support for Q4QEY5 as seed ortholog is 100%.
Bootstrap support for D3AYG2 as seed ortholog is 100%.

Group of orthologs #1183. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4Q7N8              	100.00%		D3B7E1              	100.00%
Bootstrap support for Q4Q7N8 as seed ortholog is 100%.
Bootstrap support for D3B7E1 as seed ortholog is 100%.

Group of orthologs #1184. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:3 P.pallidum:34

Q4QHM6              	100.00%		D3B7X6              	100.00%
Bootstrap support for Q4QHM6 as seed ortholog is 51%.
Alternative seed ortholog is Q4QH22 (3 bits away from this cluster)
Bootstrap support for D3B7X6 as seed ortholog is 96%.

Group of orthologs #1185. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4Q840              	100.00%		D3BSR2              	100.00%
Bootstrap support for Q4Q840 as seed ortholog is 100%.
Bootstrap support for D3BSR2 as seed ortholog is 100%.

Group of orthologs #1186. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4QBT0              	100.00%		D3BQ25              	100.00%
Bootstrap support for Q4QBT0 as seed ortholog is 100%.
Bootstrap support for D3BQ25 as seed ortholog is 100%.

Group of orthologs #1187. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:12 P.pallidum:81

Q4QJG0              	100.00%		D3BKH9              	100.00%
Bootstrap support for Q4QJG0 as seed ortholog is 70%.
Alternative seed ortholog is Q4QG36 (12 bits away from this cluster)
Bootstrap support for D3BKH9 as seed ortholog is 100%.

Group of orthologs #1188. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.pallidum:81

Q4QE43              	100.00%		D3BUX7              	100.00%
Bootstrap support for Q4QE43 as seed ortholog is 100%.
Bootstrap support for D3BUX7 as seed ortholog is 100%.

Group of orthologs #1189. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.pallidum:80

Q9BHE9              	100.00%		D3B4G4              	100.00%
                    	       		D3BKN5              	5.12%
Bootstrap support for Q9BHE9 as seed ortholog is 100%.
Bootstrap support for D3B4G4 as seed ortholog is 100%.

Group of orthologs #1190. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:29 P.pallidum:37

Q4QBP1              	100.00%		D3AWE0              	100.00%
Bootstrap support for Q4QBP1 as seed ortholog is 98%.
Bootstrap support for D3AWE0 as seed ortholog is 99%.

Group of orthologs #1191. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.pallidum:80

E9ACJ7              	100.00%		D3BAW0              	100.00%
Bootstrap support for E9ACJ7 as seed ortholog is 100%.
Bootstrap support for D3BAW0 as seed ortholog is 100%.

Group of orthologs #1192. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.pallidum:80

Q4QA12              	100.00%		D3BE21              	100.00%
Bootstrap support for Q4QA12 as seed ortholog is 100%.
Bootstrap support for D3BE21 as seed ortholog is 100%.

Group of orthologs #1193. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.pallidum:80

Q4Q6U6              	100.00%		D3BJY9              	100.00%
Bootstrap support for Q4Q6U6 as seed ortholog is 100%.
Bootstrap support for D3BJY9 as seed ortholog is 100%.

Group of orthologs #1194. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.pallidum:79

Q4QGM1              	100.00%		D3BU16              	100.00%
Q4QGI8              	56.20%		
Q4QGI4              	53.66%		
Q4QGI2              	53.12%		
Q4QGK2              	43.19%		
Q4QGL8              	39.50%		
Q4QGL2              	38.50%		
Q4QGK8              	38.36%		
Q4QGI0              	32.86%		
Q4QGJ0              	30.58%		
Q4QGK1              	30.25%		
Q4QGK4              	29.78%		
Q4QGJ2              	27.30%		
Q4QGI6              	27.10%		
Q4QGK0              	26.56%		
Q4QGJ9              	26.29%		
Q4QGJ6              	23.68%		
Q4QGL5              	23.54%		
E9AEM7              	19.05%		
Bootstrap support for Q4QGM1 as seed ortholog is 100%.
Bootstrap support for D3BU16 as seed ortholog is 100%.

Group of orthologs #1195. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.pallidum:79

Q4QIR7              	100.00%		D3AXB9              	100.00%
E9AE16              	22.76%		
Bootstrap support for Q4QIR7 as seed ortholog is 100%.
Bootstrap support for D3AXB9 as seed ortholog is 100%.

Group of orthologs #1196. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.pallidum:79

Q4QAG3              	100.00%		D3AXK7              	100.00%
Bootstrap support for Q4QAG3 as seed ortholog is 100%.
Bootstrap support for D3AXK7 as seed ortholog is 100%.

Group of orthologs #1197. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.pallidum:79

Q4QEF8              	100.00%		D3B4F8              	100.00%
Bootstrap support for Q4QEF8 as seed ortholog is 100%.
Bootstrap support for D3B4F8 as seed ortholog is 100%.

Group of orthologs #1198. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.pallidum:78

Q4Q196              	100.00%		D3BJH4              	100.00%
                    	       		D3BCX6              	42.25%
                    	       		D3BB55              	24.42%
                    	       		D3BB43              	23.55%
                    	       		D3BJD4              	21.22%
Bootstrap support for Q4Q196 as seed ortholog is 100%.
Bootstrap support for D3BJH4 as seed ortholog is 100%.

Group of orthologs #1199. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.pallidum:78

Q4Q5J7              	100.00%		D3B4Z4              	100.00%
                    	       		D3BH21              	9.92%
Bootstrap support for Q4Q5J7 as seed ortholog is 100%.
Bootstrap support for D3B4Z4 as seed ortholog is 100%.

Group of orthologs #1200. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.pallidum:78

Q4Q1W6              	100.00%		D3BK63              	100.00%
Bootstrap support for Q4Q1W6 as seed ortholog is 100%.
Bootstrap support for D3BK63 as seed ortholog is 100%.

Group of orthologs #1201. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.pallidum:78

E9AG16              	100.00%		D3BPP5              	100.00%
Bootstrap support for E9AG16 as seed ortholog is 100%.
Bootstrap support for D3BPP5 as seed ortholog is 100%.

Group of orthologs #1202. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:77

Q4Q5A7              	100.00%		D3B4H4              	100.00%
Bootstrap support for Q4Q5A7 as seed ortholog is 100%.
Bootstrap support for D3B4H4 as seed ortholog is 100%.

Group of orthologs #1203. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:77

Q4Q1A4              	100.00%		D3B9L6              	100.00%
Bootstrap support for Q4Q1A4 as seed ortholog is 100%.
Bootstrap support for D3B9L6 as seed ortholog is 100%.

Group of orthologs #1204. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:77

Q7K9G0              	100.00%		D3B056              	100.00%
Bootstrap support for Q7K9G0 as seed ortholog is 100%.
Bootstrap support for D3B056 as seed ortholog is 100%.

Group of orthologs #1205. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:77

Q4Q8V7              	100.00%		D3BAU6              	100.00%
Bootstrap support for Q4Q8V7 as seed ortholog is 100%.
Bootstrap support for D3BAU6 as seed ortholog is 100%.

Group of orthologs #1206. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:77

Q4Q7C7              	100.00%		D3BIZ8              	100.00%
Bootstrap support for Q4Q7C7 as seed ortholog is 100%.
Bootstrap support for D3BIZ8 as seed ortholog is 100%.

Group of orthologs #1207. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.pallidum:77

Q4QCA1              	100.00%		D3BKH8              	100.00%
Bootstrap support for Q4QCA1 as seed ortholog is 100%.
Bootstrap support for D3BKH8 as seed ortholog is 100%.

Group of orthologs #1208. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:25 P.pallidum:77

Q9BJ46              	100.00%		D3BJI9              	100.00%
Bootstrap support for Q9BJ46 as seed ortholog is 85%.
Bootstrap support for D3BJI9 as seed ortholog is 100%.

Group of orthologs #1209. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.pallidum:76

E9ACU6              	100.00%		D3BKV2              	100.00%
                    	       		D3BSZ9              	31.27%
                    	       		D3BRK9              	22.09%
                    	       		D3B2D3              	21.77%
                    	       		D3BUR8              	20.74%
                    	       		D3BJ76              	20.27%
                    	       		D3B131              	20.11%
                    	       		D3BI30              	19.95%
                    	       		D3BV78              	12.51%
Bootstrap support for E9ACU6 as seed ortholog is 100%.
Bootstrap support for D3BKV2 as seed ortholog is 100%.

Group of orthologs #1210. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:26 P.pallidum:76

Q4QJ98              	100.00%		D3B7E2              	100.00%
Bootstrap support for Q4QJ98 as seed ortholog is 91%.
Bootstrap support for D3B7E2 as seed ortholog is 100%.

Group of orthologs #1211. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.pallidum:76

Q4QAI7              	100.00%		D3BGD8              	100.00%
Bootstrap support for Q4QAI7 as seed ortholog is 100%.
Bootstrap support for D3BGD8 as seed ortholog is 100%.

Group of orthologs #1212. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.pallidum:76

E9AF17              	100.00%		D3BVQ9              	100.00%
Bootstrap support for E9AF17 as seed ortholog is 100%.
Bootstrap support for D3BVQ9 as seed ortholog is 100%.

Group of orthologs #1213. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.pallidum:76

Q4QAL1              	100.00%		D3BUI8              	100.00%
Bootstrap support for Q4QAL1 as seed ortholog is 100%.
Bootstrap support for D3BUI8 as seed ortholog is 100%.

Group of orthologs #1214. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.pallidum:76

Q4QJC8              	100.00%		D3BLP6              	100.00%
Bootstrap support for Q4QJC8 as seed ortholog is 100%.
Bootstrap support for D3BLP6 as seed ortholog is 100%.

Group of orthologs #1215. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:75

E9AFL8              	100.00%		D3B9T4              	100.00%
Bootstrap support for E9AFL8 as seed ortholog is 100%.
Bootstrap support for D3B9T4 as seed ortholog is 100%.

Group of orthologs #1216. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:75

Q4QBE0              	100.00%		D3BCT7              	100.00%
Bootstrap support for Q4QBE0 as seed ortholog is 100%.
Bootstrap support for D3BCT7 as seed ortholog is 100%.

Group of orthologs #1217. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:75

Q4QDM7              	100.00%		D3BJ79              	100.00%
Bootstrap support for Q4QDM7 as seed ortholog is 100%.
Bootstrap support for D3BJ79 as seed ortholog is 100%.

Group of orthologs #1218. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:75

Q4QC06              	100.00%		D3BSK0              	100.00%
Bootstrap support for Q4QC06 as seed ortholog is 100%.
Bootstrap support for D3BSK0 as seed ortholog is 100%.

Group of orthologs #1219. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:75

Q4QB12              	100.00%		D3BUQ1              	100.00%
Bootstrap support for Q4QB12 as seed ortholog is 100%.
Bootstrap support for D3BUQ1 as seed ortholog is 100%.

Group of orthologs #1220. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.pallidum:75

Q4QHC9              	100.00%		D3BQ01              	100.00%
Bootstrap support for Q4QHC9 as seed ortholog is 100%.
Bootstrap support for D3BQ01 as seed ortholog is 100%.

Group of orthologs #1221. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:74

Q4QED0              	100.00%		D3BG33              	100.00%
Q4QED2              	100.00%		
Bootstrap support for Q4QED0 as seed ortholog is 100%.
Bootstrap support for Q4QED2 as seed ortholog is 100%.
Bootstrap support for D3BG33 as seed ortholog is 100%.

Group of orthologs #1222. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:74

Q4Q141              	100.00%		D3BUG2              	100.00%
Q4QDP9              	100.00%		
Bootstrap support for Q4Q141 as seed ortholog is 100%.
Bootstrap support for Q4QDP9 as seed ortholog is 100%.
Bootstrap support for D3BUG2 as seed ortholog is 100%.

Group of orthologs #1223. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:74

E9AF66              	100.00%		D3B0G4              	100.00%
Bootstrap support for E9AF66 as seed ortholog is 100%.
Bootstrap support for D3B0G4 as seed ortholog is 100%.

Group of orthologs #1224. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:74

Q9U1E4              	100.00%		D3B499              	100.00%
Bootstrap support for Q9U1E4 as seed ortholog is 100%.
Bootstrap support for D3B499 as seed ortholog is 100%.

Group of orthologs #1225. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:74

Q4Q7B2              	100.00%		D3BLC2              	100.00%
Bootstrap support for Q4Q7B2 as seed ortholog is 100%.
Bootstrap support for D3BLC2 as seed ortholog is 100%.

Group of orthologs #1226. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.pallidum:74

Q4QHB3              	100.00%		D3BC50              	100.00%
Bootstrap support for Q4QHB3 as seed ortholog is 100%.
Bootstrap support for D3BC50 as seed ortholog is 100%.

Group of orthologs #1227. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.pallidum:73

Q4Q9F6              	100.00%		D3B8Y2              	100.00%
                    	       		D3BBM2              	5.48%
Bootstrap support for Q4Q9F6 as seed ortholog is 100%.
Bootstrap support for D3B8Y2 as seed ortholog is 100%.

Group of orthologs #1228. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.pallidum:73

Q4Q9Z2              	100.00%		D3B351              	100.00%
Bootstrap support for Q4Q9Z2 as seed ortholog is 100%.
Bootstrap support for D3B351 as seed ortholog is 100%.

Group of orthologs #1229. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.pallidum:73

Q4Q8S5              	100.00%		D3BA51              	100.00%
Bootstrap support for Q4Q8S5 as seed ortholog is 100%.
Bootstrap support for D3BA51 as seed ortholog is 100%.

Group of orthologs #1230. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.pallidum:73

Q4QD96              	100.00%		D3B7Y4              	100.00%
Bootstrap support for Q4QD96 as seed ortholog is 100%.
Bootstrap support for D3B7Y4 as seed ortholog is 100%.

Group of orthologs #1231. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.pallidum:73

Q4QH58              	100.00%		D3BN13              	100.00%
Bootstrap support for Q4QH58 as seed ortholog is 100%.
Bootstrap support for D3BN13 as seed ortholog is 100%.

Group of orthologs #1232. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.pallidum:72

Q4QAB9              	100.00%		D3BUM9              	100.00%
                    	       		D3AXQ3              	52.27%
Bootstrap support for Q4QAB9 as seed ortholog is 100%.
Bootstrap support for D3BUM9 as seed ortholog is 100%.

Group of orthologs #1233. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.pallidum:72

Q4Q6T2              	100.00%		D3B9S7              	100.00%
Bootstrap support for Q4Q6T2 as seed ortholog is 100%.
Bootstrap support for D3B9S7 as seed ortholog is 100%.

Group of orthologs #1234. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.pallidum:72

E9AC87              	100.00%		D3BSQ9              	100.00%
Bootstrap support for E9AC87 as seed ortholog is 100%.
Bootstrap support for D3BSQ9 as seed ortholog is 100%.

Group of orthologs #1235. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.pallidum:72

Q4QGF3              	100.00%		D3BD64              	100.00%
Bootstrap support for Q4QGF3 as seed ortholog is 100%.
Bootstrap support for D3BD64 as seed ortholog is 100%.

Group of orthologs #1236. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.pallidum:30

Q4QFF8              	100.00%		D3BEI2              	100.00%
Bootstrap support for Q4QFF8 as seed ortholog is 100%.
Bootstrap support for D3BEI2 as seed ortholog is 73%.
Alternative seed ortholog is D3BVR5 (30 bits away from this cluster)

Group of orthologs #1237. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.pallidum:72

Q4QGU2              	100.00%		D3BGW6              	100.00%
Bootstrap support for Q4QGU2 as seed ortholog is 100%.
Bootstrap support for D3BGW6 as seed ortholog is 100%.

Group of orthologs #1238. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

E9AD06              	100.00%		D3AVK7              	100.00%
Bootstrap support for E9AD06 as seed ortholog is 100%.
Bootstrap support for D3AVK7 as seed ortholog is 100%.

Group of orthologs #1239. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q1I9              	100.00%		D3AY10              	100.00%
Bootstrap support for Q4Q1I9 as seed ortholog is 100%.
Bootstrap support for D3AY10 as seed ortholog is 100%.

Group of orthologs #1240. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q110              	100.00%		D3B288              	100.00%
Bootstrap support for Q4Q110 as seed ortholog is 100%.
Bootstrap support for D3B288 as seed ortholog is 100%.

Group of orthologs #1241. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q6K7              	100.00%		D3B2F2              	100.00%
Bootstrap support for Q4Q6K7 as seed ortholog is 100%.
Bootstrap support for D3B2F2 as seed ortholog is 100%.

Group of orthologs #1242. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q2H4              	100.00%		D3BAU7              	100.00%
Bootstrap support for Q4Q2H4 as seed ortholog is 100%.
Bootstrap support for D3BAU7 as seed ortholog is 100%.

Group of orthologs #1243. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q835              	100.00%		D3B9E9              	100.00%
Bootstrap support for Q4Q835 as seed ortholog is 100%.
Bootstrap support for D3B9E9 as seed ortholog is 100%.

Group of orthologs #1244. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:19 P.pallidum:71

E9ADP0              	100.00%		D3BJX9              	100.00%
Bootstrap support for E9ADP0 as seed ortholog is 81%.
Bootstrap support for D3BJX9 as seed ortholog is 100%.

Group of orthologs #1245. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4QEN8              	100.00%		D3B5S7              	100.00%
Bootstrap support for Q4QEN8 as seed ortholog is 100%.
Bootstrap support for D3B5S7 as seed ortholog is 100%.

Group of orthologs #1246. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q138              	100.00%		D3BM04              	100.00%
Bootstrap support for Q4Q138 as seed ortholog is 100%.
Bootstrap support for D3BM04 as seed ortholog is 100%.

Group of orthologs #1247. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.pallidum:71

Q4Q8I8              	100.00%		D3BTL0              	100.00%
Bootstrap support for Q4Q8I8 as seed ortholog is 100%.
Bootstrap support for D3BTL0 as seed ortholog is 100%.

Group of orthologs #1248. Best score 70 bits
Score difference with first non-orthologous sequence - L.major:70 P.pallidum:70

Q4QBG6              	100.00%		D3BEB8              	100.00%
                    	       		D3BLB7              	100.00%
Bootstrap support for Q4QBG6 as seed ortholog is 100%.
Bootstrap support for D3BEB8 as seed ortholog is 100%.
Bootstrap support for D3BLB7 as seed ortholog is 100%.

Group of orthologs #1249. Best score 70 bits
Score difference with first non-orthologous sequence - L.major:70 P.pallidum:70

E9ADK9              	100.00%		D3BSZ3              	100.00%
                    	       		D3BFK9              	37.29%
Bootstrap support for E9ADK9 as seed ortholog is 100%.
Bootstrap support for D3BSZ3 as seed ortholog is 100%.

Group of orthologs #1250. Best score 70 bits
Score difference with first non-orthologous sequence - L.major:70 P.pallidum:18

Q4QAC6              	100.00%		D3BFD9              	100.00%
Bootstrap support for Q4QAC6 as seed ortholog is 100%.
Bootstrap support for D3BFD9 as seed ortholog is 90%.

Group of orthologs #1251. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:12 P.pallidum:69

Q4QHE2              	100.00%		D3BBA6              	58.69%
Q4QHE4              	100.00%		D3AVG4              	100.00%
                    	       		D3BAA3              	50.89%
Bootstrap support for Q4QHE2 as seed ortholog is 73%.
Alternative seed ortholog is Q4QBX3 (12 bits away from this cluster)
Bootstrap support for Q4QHE4 as seed ortholog is 73%.
Alternative seed ortholog is Q4QBX3 (12 bits away from this cluster)
Bootstrap support for D3AVG4 as seed ortholog is 100%.

Group of orthologs #1252. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4QJ66              	100.00%		D3B398              	100.00%
                    	       		D3BFP6              	34.34%
Bootstrap support for Q4QJ66 as seed ortholog is 100%.
Bootstrap support for D3B398 as seed ortholog is 100%.

Group of orthologs #1253. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

E9AEW0              	100.00%		D3BRA6              	100.00%
                    	       		D3BJY0              	29.55%
Bootstrap support for E9AEW0 as seed ortholog is 100%.
Bootstrap support for D3BRA6 as seed ortholog is 100%.

Group of orthologs #1254. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4QFX0              	100.00%		D3BAA6              	100.00%
Q4Q5X4              	15.60%		
Bootstrap support for Q4QFX0 as seed ortholog is 100%.
Bootstrap support for D3BAA6 as seed ortholog is 100%.

Group of orthologs #1255. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4QG06              	100.00%		D3B1Q8              	100.00%
Bootstrap support for Q4QG06 as seed ortholog is 100%.
Bootstrap support for D3B1Q8 as seed ortholog is 100%.

Group of orthologs #1256. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4Q1X7              	100.00%		D3BKE3              	100.00%
Bootstrap support for Q4Q1X7 as seed ortholog is 100%.
Bootstrap support for D3BKE3 as seed ortholog is 100%.

Group of orthologs #1257. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4QA50              	100.00%		D3BD13              	100.00%
Bootstrap support for Q4QA50 as seed ortholog is 100%.
Bootstrap support for D3BD13 as seed ortholog is 100%.

Group of orthologs #1258. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4QFQ5              	100.00%		D3BEA7              	100.00%
Bootstrap support for Q4QFQ5 as seed ortholog is 100%.
Bootstrap support for D3BEA7 as seed ortholog is 100%.

Group of orthologs #1259. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:19 P.pallidum:69

Q4Q5L1              	100.00%		D3BT12              	100.00%
Bootstrap support for Q4Q5L1 as seed ortholog is 85%.
Bootstrap support for D3BT12 as seed ortholog is 100%.

Group of orthologs #1260. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.pallidum:69

Q4Q9C0              	100.00%		D3BQF9              	100.00%
Bootstrap support for Q4Q9C0 as seed ortholog is 100%.
Bootstrap support for D3BQF9 as seed ortholog is 100%.

Group of orthologs #1261. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:68 P.pallidum:68

Q4Q7Z7              	100.00%		D3B3S3              	100.00%
Q4Q1G2              	35.00%		
Q4QB35              	31.69%		
Q4Q1G4              	19.49%		
Bootstrap support for Q4Q7Z7 as seed ortholog is 100%.
Bootstrap support for D3B3S3 as seed ortholog is 100%.

Group of orthologs #1262. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:68 P.pallidum:68

Q4Q488              	100.00%		D3B081              	100.00%
Bootstrap support for Q4Q488 as seed ortholog is 100%.
Bootstrap support for D3B081 as seed ortholog is 100%.

Group of orthologs #1263. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:68 P.pallidum:68

Q4FXY8              	100.00%		D3BAV8              	100.00%
Bootstrap support for Q4FXY8 as seed ortholog is 100%.
Bootstrap support for D3BAV8 as seed ortholog is 100%.

Group of orthologs #1264. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:68 P.pallidum:68

Q4QHW1              	100.00%		D3BH04              	100.00%
Bootstrap support for Q4QHW1 as seed ortholog is 100%.
Bootstrap support for D3BH04 as seed ortholog is 100%.

Group of orthologs #1265. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:26 P.pallidum:68

Q4QDY3              	100.00%		D3BQ32              	100.00%
Bootstrap support for Q4QDY3 as seed ortholog is 50%.
Alternative seed ortholog is Q4Q941 (26 bits away from this cluster)
Bootstrap support for D3BQ32 as seed ortholog is 100%.

Group of orthologs #1266. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.pallidum:67

Q4QJF4              	100.00%		D3B7G7              	100.00%
                    	       		D3B7G4              	44.40%
                    	       		D3B7G5              	41.88%
                    	       		D3B7G6              	31.99%
Bootstrap support for Q4QJF4 as seed ortholog is 100%.
Bootstrap support for D3B7G7 as seed ortholog is 100%.

Group of orthologs #1267. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.pallidum:11

E9AEA7              	100.00%		D3B498              	100.00%
                    	       		D3BFW6              	8.46%
Bootstrap support for E9AEA7 as seed ortholog is 100%.
Bootstrap support for D3B498 as seed ortholog is 79%.

Group of orthologs #1268. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:16 P.pallidum:15

E9AF90              	100.00%		D3BMT2              	100.00%
                    	       		D3B5D3              	8.52%
Bootstrap support for E9AF90 as seed ortholog is 79%.
Bootstrap support for D3BMT2 as seed ortholog is 77%.

Group of orthologs #1269. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.pallidum:67

Q4Q7D8              	100.00%		D3AXS1              	100.00%
Bootstrap support for Q4Q7D8 as seed ortholog is 100%.
Bootstrap support for D3AXS1 as seed ortholog is 100%.

Group of orthologs #1270. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:24 P.pallidum:67

E9AEZ6              	100.00%		D3BP63              	100.00%
Bootstrap support for E9AEZ6 as seed ortholog is 91%.
Bootstrap support for D3BP63 as seed ortholog is 100%.

Group of orthologs #1271. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.pallidum:67

Q4Q1B5              	100.00%		D3BTS9              	100.00%
Bootstrap support for Q4Q1B5 as seed ortholog is 100%.
Bootstrap support for D3BTS9 as seed ortholog is 100%.

Group of orthologs #1272. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.pallidum:66

Q4Q2L9              	100.00%		D3AX55              	100.00%
                    	       		D3B6S5              	9.12%
Bootstrap support for Q4Q2L9 as seed ortholog is 100%.
Bootstrap support for D3AX55 as seed ortholog is 100%.

Group of orthologs #1273. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.pallidum:66

Q4Q8X0              	100.00%		D3B4V8              	100.00%
Bootstrap support for Q4Q8X0 as seed ortholog is 100%.
Bootstrap support for D3B4V8 as seed ortholog is 100%.

Group of orthologs #1274. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.pallidum:66

Q4Q8S8              	100.00%		D3BAS3              	100.00%
Bootstrap support for Q4Q8S8 as seed ortholog is 100%.
Bootstrap support for D3BAS3 as seed ortholog is 100%.

Group of orthologs #1275. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.pallidum:66

Q4QA54              	100.00%		D3BJ38              	100.00%
Bootstrap support for Q4QA54 as seed ortholog is 100%.
Bootstrap support for D3BJ38 as seed ortholog is 100%.

Group of orthologs #1276. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.pallidum:66

Q4Q9Y8              	100.00%		D3BU32              	100.00%
Bootstrap support for Q4Q9Y8 as seed ortholog is 100%.
Bootstrap support for D3BU32 as seed ortholog is 100%.

Group of orthologs #1277. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:7 P.pallidum:65

Q4QHM8              	100.00%		D3BDT9              	100.00%
                    	       		D3BB99              	14.59%
Bootstrap support for Q4QHM8 as seed ortholog is 62%.
Alternative seed ortholog is Q4QHM9 (7 bits away from this cluster)
Bootstrap support for D3BDT9 as seed ortholog is 100%.

Group of orthologs #1278. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:22 P.pallidum:19

Q4Q0U6              	100.00%		D3AXL9              	100.00%
Bootstrap support for Q4Q0U6 as seed ortholog is 89%.
Bootstrap support for D3AXL9 as seed ortholog is 83%.

Group of orthologs #1279. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.pallidum:65

E9AEZ8              	100.00%		D3B5X9              	100.00%
Bootstrap support for E9AEZ8 as seed ortholog is 100%.
Bootstrap support for D3B5X9 as seed ortholog is 100%.

Group of orthologs #1280. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.pallidum:65

Q4QAL3              	100.00%		D3BCH8              	100.00%
Bootstrap support for Q4QAL3 as seed ortholog is 100%.
Bootstrap support for D3BCH8 as seed ortholog is 100%.

Group of orthologs #1281. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.pallidum:65

Q4QBE5              	100.00%		D3BR17              	100.00%
Bootstrap support for Q4QBE5 as seed ortholog is 100%.
Bootstrap support for D3BR17 as seed ortholog is 100%.

Group of orthologs #1282. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q9D0              	100.00%		D3BPK0              	100.00%
Q4Q9D2              	100.00%		
Bootstrap support for Q4Q9D0 as seed ortholog is 100%.
Bootstrap support for Q4Q9D2 as seed ortholog is 100%.
Bootstrap support for D3BPK0 as seed ortholog is 100%.

Group of orthologs #1283. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

E9AFF6              	100.00%		D3B1P5              	100.00%
Bootstrap support for E9AFF6 as seed ortholog is 100%.
Bootstrap support for D3B1P5 as seed ortholog is 100%.

Group of orthologs #1284. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q1F7              	100.00%		D3B4Y2              	100.00%
Bootstrap support for Q4Q1F7 as seed ortholog is 100%.
Bootstrap support for D3B4Y2 as seed ortholog is 100%.

Group of orthologs #1285. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q582              	100.00%		D3B6R3              	100.00%
Bootstrap support for Q4Q582 as seed ortholog is 100%.
Bootstrap support for D3B6R3 as seed ortholog is 100%.

Group of orthologs #1286. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q9H8              	100.00%		D3B538              	100.00%
Bootstrap support for Q4Q9H8 as seed ortholog is 100%.
Bootstrap support for D3B538 as seed ortholog is 100%.

Group of orthologs #1287. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q7P4              	100.00%		D3BEK8              	100.00%
Bootstrap support for Q4Q7P4 as seed ortholog is 100%.
Bootstrap support for D3BEK8 as seed ortholog is 100%.

Group of orthologs #1288. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q3V5              	100.00%		D3BKP9              	100.00%
Bootstrap support for Q4Q3V5 as seed ortholog is 100%.
Bootstrap support for D3BKP9 as seed ortholog is 100%.

Group of orthologs #1289. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.pallidum:64

Q4Q2M3              	100.00%		D3BN74              	100.00%
Bootstrap support for Q4Q2M3 as seed ortholog is 100%.
Bootstrap support for D3BN74 as seed ortholog is 100%.

Group of orthologs #1290. Best score 63 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:63

Q4Q8A8              	100.00%		D3BHE1              	100.00%
Q4QE90              	24.40%		
Q4QE86              	23.76%		
Q4QE87              	13.56%		
Bootstrap support for Q4Q8A8 as seed ortholog is 100%.
Bootstrap support for D3BHE1 as seed ortholog is 100%.

Group of orthologs #1291. Best score 63 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:63

Q4Q7P0              	100.00%		D3B356              	100.00%
Bootstrap support for Q4Q7P0 as seed ortholog is 100%.
Bootstrap support for D3B356 as seed ortholog is 100%.

Group of orthologs #1292. Best score 63 bits
Score difference with first non-orthologous sequence - L.major:63 P.pallidum:63

Q4QHD5              	100.00%		D3B6E5              	100.00%
Bootstrap support for Q4QHD5 as seed ortholog is 100%.
Bootstrap support for D3B6E5 as seed ortholog is 100%.

Group of orthologs #1293. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:62

E9AEH2              	100.00%		D3BD34              	100.00%
E9AFY3              	100.00%		
Bootstrap support for E9AEH2 as seed ortholog is 100%.
Bootstrap support for E9AFY3 as seed ortholog is 100%.
Bootstrap support for D3BD34 as seed ortholog is 100%.

Group of orthologs #1294. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:62

Q4Q244              	100.00%		D3BAU4              	100.00%
Bootstrap support for Q4Q244 as seed ortholog is 100%.
Bootstrap support for D3BAU4 as seed ortholog is 100%.

Group of orthologs #1295. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:62

E9ADI4              	100.00%		D3BPJ5              	100.00%
Bootstrap support for E9ADI4 as seed ortholog is 100%.
Bootstrap support for D3BPJ5 as seed ortholog is 100%.

Group of orthologs #1296. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:62

Q4QBJ1              	100.00%		D3BCT9              	100.00%
Bootstrap support for Q4QBJ1 as seed ortholog is 100%.
Bootstrap support for D3BCT9 as seed ortholog is 100%.

Group of orthologs #1297. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.pallidum:62

Q4Q874              	100.00%		D3BM22              	100.00%
Bootstrap support for Q4Q874 as seed ortholog is 100%.
Bootstrap support for D3BM22 as seed ortholog is 100%.

Group of orthologs #1298. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.pallidum:61

Q4QCF9              	100.00%		D3BD69              	100.00%
                    	       		D3BEX3              	13.64%
Bootstrap support for Q4QCF9 as seed ortholog is 100%.
Bootstrap support for D3BD69 as seed ortholog is 100%.

Group of orthologs #1299. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.pallidum:61

Q4QEF6              	100.00%		D3BBL7              	100.00%
                    	       		D3BPM3              	37.41%
Bootstrap support for Q4QEF6 as seed ortholog is 100%.
Bootstrap support for D3BBL7 as seed ortholog is 100%.

Group of orthologs #1300. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.pallidum:61

Q4Q9B3              	100.00%		D3BR00              	100.00%
                    	       		D3BR01              	47.27%
Bootstrap support for Q4Q9B3 as seed ortholog is 100%.
Bootstrap support for D3BR00 as seed ortholog is 100%.

Group of orthologs #1301. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.pallidum:61

Q4QFA3              	100.00%		D3B024              	100.00%
Bootstrap support for Q4QFA3 as seed ortholog is 100%.
Bootstrap support for D3B024 as seed ortholog is 100%.

Group of orthologs #1302. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.pallidum:61

Q19R45              	100.00%		D3BJ37              	100.00%
Bootstrap support for Q19R45 as seed ortholog is 100%.
Bootstrap support for D3BJ37 as seed ortholog is 100%.

Group of orthologs #1303. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:9 P.pallidum:61

Q4Q860              	100.00%		D3BVK7              	100.00%
Bootstrap support for Q4Q860 as seed ortholog is 70%.
Alternative seed ortholog is E9ADD4 (9 bits away from this cluster)
Bootstrap support for D3BVK7 as seed ortholog is 100%.

Group of orthologs #1304. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.pallidum:60

E9ADK3              	100.00%		D3B3A3              	100.00%
Q4Q636              	13.73%		
Q4Q628              	11.87%		
Bootstrap support for E9ADK3 as seed ortholog is 100%.
Bootstrap support for D3B3A3 as seed ortholog is 100%.

Group of orthologs #1305. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.pallidum:60

Q4Q2I9              	100.00%		D3BKA3              	100.00%
Bootstrap support for Q4Q2I9 as seed ortholog is 100%.
Bootstrap support for D3BKA3 as seed ortholog is 100%.

Group of orthologs #1306. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.pallidum:60

E9AEI8              	100.00%		D3BR31              	100.00%
Bootstrap support for E9AEI8 as seed ortholog is 100%.
Bootstrap support for D3BR31 as seed ortholog is 100%.

Group of orthologs #1307. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.pallidum:60

Q4QGQ4              	100.00%		D3BCD6              	100.00%
Bootstrap support for Q4QGQ4 as seed ortholog is 100%.
Bootstrap support for D3BCD6 as seed ortholog is 100%.

Group of orthologs #1308. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.pallidum:59

E9AF98              	100.00%		D3B573              	100.00%
Bootstrap support for E9AF98 as seed ortholog is 100%.
Bootstrap support for D3B573 as seed ortholog is 100%.

Group of orthologs #1309. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.pallidum:59

Q4Q2M5              	100.00%		D3BA68              	100.00%
Bootstrap support for Q4Q2M5 as seed ortholog is 100%.
Bootstrap support for D3BA68 as seed ortholog is 100%.

Group of orthologs #1310. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.pallidum:19

E9ADQ2              	100.00%		D3BNF6              	100.00%
Bootstrap support for E9ADQ2 as seed ortholog is 100%.
Bootstrap support for D3BNF6 as seed ortholog is 80%.

Group of orthologs #1311. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.pallidum:59

Q4Q3F3              	100.00%		D3BU06              	100.00%
Bootstrap support for Q4Q3F3 as seed ortholog is 100%.
Bootstrap support for D3BU06 as seed ortholog is 100%.

Group of orthologs #1312. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.pallidum:59

Q4QCV4              	100.00%		D3BMB4              	100.00%
Bootstrap support for Q4QCV4 as seed ortholog is 100%.
Bootstrap support for D3BMB4 as seed ortholog is 100%.

Group of orthologs #1313. Best score 58 bits
Score difference with first non-orthologous sequence - L.major:58 P.pallidum:58

Q4QFN8              	100.00%		D3AZP3              	100.00%
Bootstrap support for Q4QFN8 as seed ortholog is 100%.
Bootstrap support for D3AZP3 as seed ortholog is 100%.

Group of orthologs #1314. Best score 57 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:57

Q4QCE1              	100.00%		D3BH64              	100.00%
E9AF13              	97.47%		
Bootstrap support for Q4QCE1 as seed ortholog is 100%.
Bootstrap support for D3BH64 as seed ortholog is 100%.

Group of orthologs #1315. Best score 57 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:57

E9AFS3              	100.00%		D3AY14              	100.00%
Bootstrap support for E9AFS3 as seed ortholog is 100%.
Bootstrap support for D3AY14 as seed ortholog is 100%.

Group of orthologs #1316. Best score 57 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:57

E9AFY7              	100.00%		D3B1B6              	100.00%
Bootstrap support for E9AFY7 as seed ortholog is 100%.
Bootstrap support for D3B1B6 as seed ortholog is 100%.

Group of orthologs #1317. Best score 57 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:57

Q4QA14              	100.00%		D3BJ80              	100.00%
Bootstrap support for Q4QA14 as seed ortholog is 100%.
Bootstrap support for D3BJ80 as seed ortholog is 100%.

Group of orthologs #1318. Best score 57 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:57

Q4Q8Q8              	100.00%		D3BKZ5              	100.00%
Bootstrap support for Q4Q8Q8 as seed ortholog is 100%.
Bootstrap support for D3BKZ5 as seed ortholog is 100%.

Group of orthologs #1319. Best score 57 bits
Score difference with first non-orthologous sequence - L.major:57 P.pallidum:57

Q4Q8B5              	100.00%		D3BR49              	100.00%
Bootstrap support for Q4Q8B5 as seed ortholog is 100%.
Bootstrap support for D3BR49 as seed ortholog is 100%.

Group of orthologs #1320. Best score 56 bits
Score difference with first non-orthologous sequence - L.major:56 P.pallidum:56

Q9NED5              	100.00%		D3BKV8              	100.00%
Q9NED6              	71.85%		
Bootstrap support for Q9NED5 as seed ortholog is 100%.
Bootstrap support for D3BKV8 as seed ortholog is 100%.

Group of orthologs #1321. Best score 56 bits
Score difference with first non-orthologous sequence - L.major:56 P.pallidum:15

Q4QFW1              	100.00%		D3BAZ9              	100.00%
Bootstrap support for Q4QFW1 as seed ortholog is 100%.
Bootstrap support for D3BAZ9 as seed ortholog is 75%.

Group of orthologs #1322. Best score 56 bits
Score difference with first non-orthologous sequence - L.major:56 P.pallidum:56

Q4Q5W6              	100.00%		D3BR38              	100.00%
Bootstrap support for Q4Q5W6 as seed ortholog is 100%.
Bootstrap support for D3BR38 as seed ortholog is 100%.

Group of orthologs #1323. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:55 P.pallidum:55

Q4Q542              	100.00%		D3B0M7              	100.00%
Bootstrap support for Q4Q542 as seed ortholog is 100%.
Bootstrap support for D3B0M7 as seed ortholog is 100%.

Group of orthologs #1324. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:55 P.pallidum:55

Q4Q1Z6              	100.00%		D3B7P9              	100.00%
Bootstrap support for Q4Q1Z6 as seed ortholog is 100%.
Bootstrap support for D3B7P9 as seed ortholog is 100%.

Group of orthologs #1325. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:55 P.pallidum:55

Q4Q817              	100.00%		D3B2B2              	100.00%
Bootstrap support for Q4Q817 as seed ortholog is 100%.
Bootstrap support for D3B2B2 as seed ortholog is 100%.

Group of orthologs #1326. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:55 P.pallidum:55

E9ADY0              	100.00%		D3BTV0              	100.00%
Bootstrap support for E9ADY0 as seed ortholog is 100%.
Bootstrap support for D3BTV0 as seed ortholog is 100%.

Group of orthologs #1327. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:55 P.pallidum:55

Q4QBX0              	100.00%		D3BP56              	100.00%
Bootstrap support for Q4QBX0 as seed ortholog is 100%.
Bootstrap support for D3BP56 as seed ortholog is 100%.

Group of orthologs #1328. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.pallidum:54

Q4Q1M6              	100.00%		D3AVJ5              	100.00%
Bootstrap support for Q4Q1M6 as seed ortholog is 100%.
Bootstrap support for D3AVJ5 as seed ortholog is 100%.

Group of orthologs #1329. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.pallidum:54

Q4QIV9              	100.00%		D3B0A5              	100.00%
Bootstrap support for Q4QIV9 as seed ortholog is 100%.
Bootstrap support for D3B0A5 as seed ortholog is 100%.

Group of orthologs #1330. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.pallidum:54

E9AE30              	100.00%		D3BKT0              	100.00%
Bootstrap support for E9AE30 as seed ortholog is 100%.
Bootstrap support for D3BKT0 as seed ortholog is 100%.

Group of orthologs #1331. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.pallidum:54

Q4QD49              	100.00%		D3B7W9              	100.00%
Bootstrap support for Q4QD49 as seed ortholog is 100%.
Bootstrap support for D3B7W9 as seed ortholog is 100%.

Group of orthologs #1332. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.pallidum:54

Q4QE93              	100.00%		D3BCQ8              	100.00%
Bootstrap support for Q4QE93 as seed ortholog is 100%.
Bootstrap support for D3BCQ8 as seed ortholog is 100%.

Group of orthologs #1333. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.pallidum:53

Q4Q129              	100.00%		D3BGR4              	100.00%
E9AEM3              	8.29%		D3BJK1              	19.87%
Bootstrap support for Q4Q129 as seed ortholog is 100%.
Bootstrap support for D3BGR4 as seed ortholog is 100%.

Group of orthologs #1334. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.pallidum:53

Q4Q2J7              	100.00%		D3B1R6              	100.00%
Bootstrap support for Q4Q2J7 as seed ortholog is 100%.
Bootstrap support for D3B1R6 as seed ortholog is 100%.

Group of orthologs #1335. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.pallidum:53

E9ACL9              	100.00%		D3BTG7              	100.00%
Bootstrap support for E9ACL9 as seed ortholog is 100%.
Bootstrap support for D3BTG7 as seed ortholog is 100%.

Group of orthologs #1336. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.pallidum:53

Q4Q5Y8              	100.00%		D3BJS6              	100.00%
Bootstrap support for Q4Q5Y8 as seed ortholog is 100%.
Bootstrap support for D3BJS6 as seed ortholog is 100%.

Group of orthologs #1337. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.pallidum:53

Q4QI26              	100.00%		D3BFX1              	100.00%
Bootstrap support for Q4QI26 as seed ortholog is 100%.
Bootstrap support for D3BFX1 as seed ortholog is 100%.

Group of orthologs #1338. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.pallidum:53

Q4QF28              	100.00%		D3BKQ3              	100.00%
Bootstrap support for Q4QF28 as seed ortholog is 100%.
Bootstrap support for D3BKQ3 as seed ortholog is 100%.

Group of orthologs #1339. Best score 52 bits
Score difference with first non-orthologous sequence - L.major:52 P.pallidum:52

Q4QAA8              	100.00%		D3B535              	100.00%
Q4QHU2              	19.97%		
Bootstrap support for Q4QAA8 as seed ortholog is 100%.
Bootstrap support for D3B535 as seed ortholog is 100%.

Group of orthologs #1340. Best score 52 bits
Score difference with first non-orthologous sequence - L.major:52 P.pallidum:52

Q4QDE4              	100.00%		D3BC06              	100.00%
Bootstrap support for Q4QDE4 as seed ortholog is 100%.
Bootstrap support for D3BC06 as seed ortholog is 100%.

Group of orthologs #1341. Best score 51 bits
Score difference with first non-orthologous sequence - L.major:51 P.pallidum:51

Q4Q5H5              	100.00%		D3AWW2              	100.00%
Bootstrap support for Q4Q5H5 as seed ortholog is 100%.
Bootstrap support for D3AWW2 as seed ortholog is 100%.

Group of orthologs #1342. Best score 51 bits
Score difference with first non-orthologous sequence - L.major:51 P.pallidum:51

Q4Q2H6              	100.00%		D3B416              	100.00%
Bootstrap support for Q4Q2H6 as seed ortholog is 100%.
Bootstrap support for D3B416 as seed ortholog is 100%.

Group of orthologs #1343. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.pallidum:50

E9AFB2              	100.00%		D3AYJ3              	100.00%
Bootstrap support for E9AFB2 as seed ortholog is 100%.
Bootstrap support for D3AYJ3 as seed ortholog is 100%.

Group of orthologs #1344. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.pallidum:4

E9AC16              	100.00%		D3BAT7              	100.00%
Bootstrap support for E9AC16 as seed ortholog is 100%.
Bootstrap support for D3BAT7 as seed ortholog is 61%.
Alternative seed ortholog is D3B6I2 (4 bits away from this cluster)

Group of orthologs #1345. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.pallidum:50

Q4QE07              	100.00%		D3AZW0              	100.00%
Bootstrap support for Q4QE07 as seed ortholog is 100%.
Bootstrap support for D3AZW0 as seed ortholog is 100%.

Group of orthologs #1346. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.pallidum:50

Q4Q9Q1              	100.00%		D3B637              	100.00%
Bootstrap support for Q4Q9Q1 as seed ortholog is 100%.
Bootstrap support for D3B637 as seed ortholog is 100%.

Group of orthologs #1347. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.pallidum:50

Q4Q7I2              	100.00%		D3BJY7              	100.00%
Bootstrap support for Q4Q7I2 as seed ortholog is 100%.
Bootstrap support for D3BJY7 as seed ortholog is 100%.

Group of orthologs #1348. Best score 49 bits
Score difference with first non-orthologous sequence - L.major:49 P.pallidum:49

Q4QAG9              	100.00%		D3BFK7              	100.00%
                    	       		D3BLN7              	61.76%
Bootstrap support for Q4QAG9 as seed ortholog is 100%.
Bootstrap support for D3BFK7 as seed ortholog is 100%.

Group of orthologs #1349. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4Q2B4              	100.00%		D3BAI5              	100.00%
                    	       		D3B1I6              	19.85%
Bootstrap support for Q4Q2B4 as seed ortholog is 100%.
Bootstrap support for D3BAI5 as seed ortholog is 100%.

Group of orthologs #1350. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4Q2I8              	100.00%		D3B1A9              	100.00%
Bootstrap support for Q4Q2I8 as seed ortholog is 100%.
Bootstrap support for D3B1A9 as seed ortholog is 100%.

Group of orthologs #1351. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4Q8V1              	100.00%		D3B3C9              	100.00%
Bootstrap support for Q4Q8V1 as seed ortholog is 100%.
Bootstrap support for D3B3C9 as seed ortholog is 100%.

Group of orthologs #1352. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4Q256              	100.00%		D3BEQ8              	100.00%
Bootstrap support for Q4Q256 as seed ortholog is 100%.
Bootstrap support for D3BEQ8 as seed ortholog is 100%.

Group of orthologs #1353. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4QBZ7              	100.00%		D3BEB9              	100.00%
Bootstrap support for Q4QBZ7 as seed ortholog is 100%.
Bootstrap support for D3BEB9 as seed ortholog is 100%.

Group of orthologs #1354. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4QJ62              	100.00%		D3BGK9              	100.00%
Bootstrap support for Q4QJ62 as seed ortholog is 100%.
Bootstrap support for D3BGK9 as seed ortholog is 100%.

Group of orthologs #1355. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.pallidum:48

Q4QD02              	100.00%		D3BTK4              	100.00%
Bootstrap support for Q4QD02 as seed ortholog is 100%.
Bootstrap support for D3BTK4 as seed ortholog is 100%.

Group of orthologs #1356. Best score 47 bits
Score difference with first non-orthologous sequence - L.major:47 P.pallidum:47

Q4QGW4              	100.00%		D3B503              	100.00%
                    	       		D3BSQ2              	6.13%
Bootstrap support for Q4QGW4 as seed ortholog is 100%.
Bootstrap support for D3B503 as seed ortholog is 100%.

Group of orthologs #1357. Best score 47 bits
Score difference with first non-orthologous sequence - L.major:47 P.pallidum:47

Q4Q9J1              	100.00%		D3B9C3              	100.00%
Bootstrap support for Q4Q9J1 as seed ortholog is 100%.
Bootstrap support for D3B9C3 as seed ortholog is 100%.

Group of orthologs #1358. Best score 46 bits
Score difference with first non-orthologous sequence - L.major:46 P.pallidum:46

Q4Q6U3              	100.00%		D3AVK3              	100.00%
Bootstrap support for Q4Q6U3 as seed ortholog is 100%.
Bootstrap support for D3AVK3 as seed ortholog is 100%.

Group of orthologs #1359. Best score 46 bits
Score difference with first non-orthologous sequence - L.major:46 P.pallidum:46

Q4QDP0              	100.00%		D3B1P7              	100.00%
Bootstrap support for Q4QDP0 as seed ortholog is 100%.
Bootstrap support for D3B1P7 as seed ortholog is 100%.

Group of orthologs #1360. Best score 46 bits
Score difference with first non-orthologous sequence - L.major:46 P.pallidum:46

Q4QI29              	100.00%		D3BDV3              	100.00%
Bootstrap support for Q4QI29 as seed ortholog is 100%.
Bootstrap support for D3BDV3 as seed ortholog is 100%.

Group of orthologs #1361. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

E9ACT8              	100.00%		D3B3B1              	100.00%
                    	       		D3BRR5              	6.86%
Bootstrap support for E9ACT8 as seed ortholog is 100%.
Bootstrap support for D3B3B1 as seed ortholog is 100%.

Group of orthologs #1362. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q4QAD9              	100.00%		D3AVN1              	100.00%
Bootstrap support for Q4QAD9 as seed ortholog is 100%.
Bootstrap support for D3AVN1 as seed ortholog is 100%.

Group of orthologs #1363. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q4Q5N7              	100.00%		D3B733              	100.00%
Bootstrap support for Q4Q5N7 as seed ortholog is 100%.
Bootstrap support for D3B733 as seed ortholog is 100%.

Group of orthologs #1364. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q9U1D9              	100.00%		D3AZ35              	100.00%
Bootstrap support for Q9U1D9 as seed ortholog is 100%.
Bootstrap support for D3AZ35 as seed ortholog is 100%.

Group of orthologs #1365. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q4Q2S5              	100.00%		D3BFN4              	100.00%
Bootstrap support for Q4Q2S5 as seed ortholog is 100%.
Bootstrap support for D3BFN4 as seed ortholog is 100%.

Group of orthologs #1366. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q4QDH9              	100.00%		D3BBD7              	100.00%
Bootstrap support for Q4QDH9 as seed ortholog is 100%.
Bootstrap support for D3BBD7 as seed ortholog is 100%.

Group of orthologs #1367. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q4QJJ4              	100.00%		D3B9F0              	100.00%
Bootstrap support for Q4QJJ4 as seed ortholog is 100%.
Bootstrap support for D3B9F0 as seed ortholog is 100%.

Group of orthologs #1368. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.pallidum:45

Q4QDT2              	100.00%		D3BP84              	100.00%
Bootstrap support for Q4QDT2 as seed ortholog is 100%.
Bootstrap support for D3BP84 as seed ortholog is 100%.

Group of orthologs #1369. Best score 44 bits
Score difference with first non-orthologous sequence - L.major:44 P.pallidum:44

Q4Q6B6              	100.00%		D3BC71              	100.00%
Q4Q6B7              	100.00%		D3BC72              	8.21%
Q4QC79              	23.26%		
Q4QGL4              	21.18%		
E9AEF4              	19.44%		
Q4Q6B8              	18.54%		
Q25331              	13.34%		
Q4QGJ7              	13.34%		
Q4QGK6              	13.34%		
Q4QGJ4              	13.00%		
E9ACQ0              	5.90%		
Q4QHW6              	5.90%		
Bootstrap support for Q4Q6B6 as seed ortholog is 100%.
Bootstrap support for Q4Q6B7 as seed ortholog is 100%.
Bootstrap support for D3BC71 as seed ortholog is 100%.

Group of orthologs #1370. Best score 44 bits
Score difference with first non-orthologous sequence - L.major:44 P.pallidum:44

Q4QDP5              	100.00%		D3BNS7              	100.00%
                    	       		D3B5T3              	10.58%
Bootstrap support for Q4QDP5 as seed ortholog is 100%.
Bootstrap support for D3BNS7 as seed ortholog is 100%.

Group of orthologs #1371. Best score 43 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:43

Q4Q2X1              	100.00%		D3BFD8              	100.00%
Bootstrap support for Q4Q2X1 as seed ortholog is 100%.
Bootstrap support for D3BFD8 as seed ortholog is 100%.

Group of orthologs #1372. Best score 43 bits
Score difference with first non-orthologous sequence - L.major:43 P.pallidum:43

Q4QIR5              	100.00%		D3BSK2              	100.00%
Bootstrap support for Q4QIR5 as seed ortholog is 100%.
Bootstrap support for D3BSK2 as seed ortholog is 100%.

Group of orthologs #1373. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.pallidum:42

Q4Q434              	100.00%		D3BCP6              	100.00%
Q4QGQ7              	12.47%		D3BCW5              	87.88%
                    	       		D3BDW5              	56.93%
                    	       		D3BDV5              	52.60%
                    	       		D3B0Z2              	44.81%
                    	       		D3BNK4              	26.41%
                    	       		D3BJJ7              	26.19%
                    	       		D3AZQ3              	25.54%
                    	       		D3BQ17              	14.94%
Bootstrap support for Q4Q434 as seed ortholog is 100%.
Bootstrap support for D3BCP6 as seed ortholog is 100%.

Group of orthologs #1374. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.pallidum:42

Q4QI27              	100.00%		D3BQD0              	100.00%
Q4QAH4              	12.03%		
Bootstrap support for Q4QI27 as seed ortholog is 100%.
Bootstrap support for D3BQD0 as seed ortholog is 100%.

Group of orthologs #1375. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.pallidum:42

Q4Q3L7              	100.00%		D3BUE2              	100.00%
Bootstrap support for Q4Q3L7 as seed ortholog is 100%.
Bootstrap support for D3BUE2 as seed ortholog is 100%.

Group of orthologs #1376. Best score 41 bits
Score difference with first non-orthologous sequence - L.major:41 P.pallidum:41

Q4Q0V6              	100.00%		D3AXF0              	100.00%
Bootstrap support for Q4Q0V6 as seed ortholog is 100%.
Bootstrap support for D3AXF0 as seed ortholog is 100%.

Group of orthologs #1377. Best score 41 bits
Score difference with first non-orthologous sequence - L.major:41 P.pallidum:41

Q4QB43              	100.00%		D3BDZ0              	100.00%
Bootstrap support for Q4QB43 as seed ortholog is 100%.
Bootstrap support for D3BDZ0 as seed ortholog is 100%.