###################################
825 groups of orthologs
971 in-paralogs from L.major
878 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 1816 bits
Score difference with first non-orthologous sequence - L.major:510 P.jiroveci:1816

Q4QBN6              	100.00%		L0PGR1              	100.00%
Bootstrap support for Q4QBN6 as seed ortholog is 99%.
Bootstrap support for L0PGR1 as seed ortholog is 100%.

Group of orthologs #2. Best score 1662 bits
Score difference with first non-orthologous sequence - L.major:1662 P.jiroveci:1662

E9AFM0              	100.00%		L0PCQ0              	100.00%
Bootstrap support for E9AFM0 as seed ortholog is 100%.
Bootstrap support for L0PCQ0 as seed ortholog is 100%.

Group of orthologs #3. Best score 1602 bits
Score difference with first non-orthologous sequence - L.major:1602 P.jiroveci:1602

Q4QD18              	100.00%		L0PEL4              	100.00%
Bootstrap support for Q4QD18 as seed ortholog is 100%.
Bootstrap support for L0PEL4 as seed ortholog is 100%.

Group of orthologs #4. Best score 1203 bits
Score difference with first non-orthologous sequence - L.major:682 P.jiroveci:122

Q4QGA4              	100.00%		L0PD06              	100.00%
Bootstrap support for Q4QGA4 as seed ortholog is 100%.
Bootstrap support for L0PD06 as seed ortholog is 92%.

Group of orthologs #5. Best score 1114 bits
Score difference with first non-orthologous sequence - L.major:1114 P.jiroveci:1114

Q4Q5W1              	100.00%		L0PGI2              	100.00%
Bootstrap support for Q4Q5W1 as seed ortholog is 100%.
Bootstrap support for L0PGI2 as seed ortholog is 100%.

Group of orthologs #6. Best score 1091 bits
Score difference with first non-orthologous sequence - L.major:1091 P.jiroveci:1091

Q4Q600              	100.00%		L0PB90              	100.00%
Bootstrap support for Q4Q600 as seed ortholog is 100%.
Bootstrap support for L0PB90 as seed ortholog is 100%.

Group of orthologs #7. Best score 1075 bits
Score difference with first non-orthologous sequence - L.major:1075 P.jiroveci:1075

Q4QEW0              	100.00%		L0P7C3              	100.00%
Bootstrap support for Q4QEW0 as seed ortholog is 100%.
Bootstrap support for L0P7C3 as seed ortholog is 100%.

Group of orthologs #8. Best score 1049 bits
Score difference with first non-orthologous sequence - L.major:458 P.jiroveci:1049

Q4Q836              	100.00%		L0P818              	100.00%
Bootstrap support for Q4Q836 as seed ortholog is 100%.
Bootstrap support for L0P818 as seed ortholog is 100%.

Group of orthologs #9. Best score 1040 bits
Score difference with first non-orthologous sequence - L.major:386 P.jiroveci:1040

Q4QD43              	100.00%		L0PG77              	100.00%
Bootstrap support for Q4QD43 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #10. Best score 1031 bits
Score difference with first non-orthologous sequence - L.major:1031 P.jiroveci:1031

Q4Q1R2              	100.00%		L0PBF5              	100.00%
Bootstrap support for Q4Q1R2 as seed ortholog is 100%.
Bootstrap support for L0PBF5 as seed ortholog is 100%.

Group of orthologs #11. Best score 970 bits
Score difference with first non-orthologous sequence - L.major:970 P.jiroveci:970

Q4Q3H2              	100.00%		L0PB43              	100.00%
Bootstrap support for Q4Q3H2 as seed ortholog is 100%.
Bootstrap support for L0PB43 as seed ortholog is 100%.

Group of orthologs #12. Best score 944 bits
Score difference with first non-orthologous sequence - L.major:944 P.jiroveci:944

Q4Q8H8              	100.00%		L0PBY6              	100.00%
Bootstrap support for Q4Q8H8 as seed ortholog is 100%.
Bootstrap support for L0PBY6 as seed ortholog is 100%.

Group of orthologs #13. Best score 917 bits
Score difference with first non-orthologous sequence - L.major:917 P.jiroveci:917

Q4Q418              	100.00%		L0PDK3              	100.00%
Bootstrap support for Q4Q418 as seed ortholog is 100%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #14. Best score 915 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:737

Q4Q7Y4              	100.00%		L0PEK6              	100.00%
Bootstrap support for Q4Q7Y4 as seed ortholog is 99%.
Bootstrap support for L0PEK6 as seed ortholog is 100%.

Group of orthologs #15. Best score 913 bits
Score difference with first non-orthologous sequence - L.major:95 P.jiroveci:913

Q4Q0C8              	100.00%		L0PEQ1              	100.00%
Bootstrap support for Q4Q0C8 as seed ortholog is 74%.
Alternative seed ortholog is Q4Q288 (95 bits away from this cluster)
Bootstrap support for L0PEQ1 as seed ortholog is 100%.

Group of orthologs #16. Best score 887 bits
Score difference with first non-orthologous sequence - L.major:887 P.jiroveci:887

Q4Q9I8              	100.00%		L0P7P6              	100.00%
Bootstrap support for Q4Q9I8 as seed ortholog is 100%.
Bootstrap support for L0P7P6 as seed ortholog is 100%.

Group of orthologs #17. Best score 879 bits
Score difference with first non-orthologous sequence - L.major:396 P.jiroveci:879

Q4Q4I0              	100.00%		L0PAW9              	100.00%
Q4Q4I6              	100.00%		L0PBZ0              	71.54%
Bootstrap support for Q4Q4I0 as seed ortholog is 100%.
Bootstrap support for Q4Q4I6 as seed ortholog is 100%.
Bootstrap support for L0PAW9 as seed ortholog is 100%.

Group of orthologs #18. Best score 797 bits
Score difference with first non-orthologous sequence - L.major:797 P.jiroveci:231

Q4Q6X7              	100.00%		L0PDB3              	100.00%
Bootstrap support for Q4Q6X7 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 99%.

Group of orthologs #19. Best score 771 bits
Score difference with first non-orthologous sequence - L.major:771 P.jiroveci:771

Q4QCE4              	100.00%		L0PDF1              	100.00%
Bootstrap support for Q4QCE4 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #20. Best score 767 bits
Score difference with first non-orthologous sequence - L.major:767 P.jiroveci:767

Q4Q1B9              	100.00%		L0PEW0              	100.00%
Bootstrap support for Q4Q1B9 as seed ortholog is 100%.
Bootstrap support for L0PEW0 as seed ortholog is 100%.

Group of orthologs #21. Best score 761 bits
Score difference with first non-orthologous sequence - L.major:761 P.jiroveci:761

Q4Q2B0              	100.00%		L0PCR2              	100.00%
Bootstrap support for Q4Q2B0 as seed ortholog is 100%.
Bootstrap support for L0PCR2 as seed ortholog is 100%.

Group of orthologs #22. Best score 757 bits
Score difference with first non-orthologous sequence - L.major:757 P.jiroveci:757

Q4QAG8              	100.00%		L0P9H4              	100.00%
Bootstrap support for Q4QAG8 as seed ortholog is 100%.
Bootstrap support for L0P9H4 as seed ortholog is 100%.

Group of orthologs #23. Best score 749 bits
Score difference with first non-orthologous sequence - L.major:128 P.jiroveci:749

E9ACE5              	100.00%		L0P9C7              	100.00%
Bootstrap support for E9ACE5 as seed ortholog is 99%.
Bootstrap support for L0P9C7 as seed ortholog is 100%.

Group of orthologs #24. Best score 749 bits
Score difference with first non-orthologous sequence - L.major:749 P.jiroveci:522

Q4Q0J9              	100.00%		L0PBQ6              	100.00%
Bootstrap support for Q4Q0J9 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 100%.

Group of orthologs #25. Best score 748 bits
Score difference with first non-orthologous sequence - L.major:256 P.jiroveci:608

Q4Q744              	100.00%		L0PFS2              	100.00%
Q4Q745              	100.00%		
Q4Q740              	95.96%		
Q4Q747              	79.96%		
Bootstrap support for Q4Q744 as seed ortholog is 100%.
Bootstrap support for Q4Q745 as seed ortholog is 100%.
Bootstrap support for L0PFS2 as seed ortholog is 100%.

Group of orthologs #26. Best score 744 bits
Score difference with first non-orthologous sequence - L.major:53 P.jiroveci:547

Q4Q8E6              	100.00%		L0PFV0              	100.00%
Bootstrap support for Q4Q8E6 as seed ortholog is 89%.
Bootstrap support for L0PFV0 as seed ortholog is 100%.

Group of orthologs #27. Best score 728 bits
Score difference with first non-orthologous sequence - L.major:728 P.jiroveci:728

Q4QBJ3              	100.00%		L0PDQ4              	100.00%
Bootstrap support for Q4QBJ3 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #28. Best score 722 bits
Score difference with first non-orthologous sequence - L.major:722 P.jiroveci:722

Q4Q2H7              	100.00%		L0PH89              	100.00%
Bootstrap support for Q4Q2H7 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #29. Best score 712 bits
Score difference with first non-orthologous sequence - L.major:712 P.jiroveci:712

Q4QG44              	100.00%		L0P915              	100.00%
Bootstrap support for Q4QG44 as seed ortholog is 100%.
Bootstrap support for L0P915 as seed ortholog is 100%.

Group of orthologs #30. Best score 707 bits
Score difference with first non-orthologous sequence - L.major:364 P.jiroveci:707

Q4QI42              	100.00%		L0PBR4              	100.00%
Q4Q4C4              	97.51%		
Q4QBZ6              	97.01%		
Bootstrap support for Q4QI42 as seed ortholog is 100%.
Bootstrap support for L0PBR4 as seed ortholog is 100%.

Group of orthologs #31. Best score 706 bits
Score difference with first non-orthologous sequence - L.major:486 P.jiroveci:421

Q4QEI9              	100.00%		L0PBA5              	100.00%
Q4QEI8              	98.51%		
Bootstrap support for Q4QEI9 as seed ortholog is 100%.
Bootstrap support for L0PBA5 as seed ortholog is 100%.

Group of orthologs #32. Best score 698 bits
Score difference with first non-orthologous sequence - L.major:456 P.jiroveci:362

Q95Z93              	100.00%		L0PCW9              	100.00%
Bootstrap support for Q95Z93 as seed ortholog is 100%.
Bootstrap support for L0PCW9 as seed ortholog is 100%.

Group of orthologs #33. Best score 682 bits
Score difference with first non-orthologous sequence - L.major:159 P.jiroveci:176

E9AEU3              	100.00%		L0PFC8              	100.00%
Bootstrap support for E9AEU3 as seed ortholog is 99%.
Bootstrap support for L0PFC8 as seed ortholog is 99%.

Group of orthologs #34. Best score 679 bits
Score difference with first non-orthologous sequence - L.major:40 P.jiroveci:679

Q4Q171              	100.00%		L0PGR4              	100.00%
                    	       		L0PFQ2              	93.15%
Bootstrap support for Q4Q171 as seed ortholog is 74%.
Alternative seed ortholog is E9AD65 (40 bits away from this cluster)
Bootstrap support for L0PGR4 as seed ortholog is 100%.

Group of orthologs #35. Best score 654 bits
Score difference with first non-orthologous sequence - L.major:305 P.jiroveci:654

Q4Q2M2              	100.00%		L0PAG9              	100.00%
Bootstrap support for Q4Q2M2 as seed ortholog is 100%.
Bootstrap support for L0PAG9 as seed ortholog is 100%.

Group of orthologs #36. Best score 647 bits
Score difference with first non-orthologous sequence - L.major:647 P.jiroveci:330

E9AEW4              	100.00%		L0P9U5              	100.00%
Bootstrap support for E9AEW4 as seed ortholog is 100%.
Bootstrap support for L0P9U5 as seed ortholog is 100%.

Group of orthologs #37. Best score 645 bits
Score difference with first non-orthologous sequence - L.major:645 P.jiroveci:645

E9AFR3              	100.00%		L0PGJ4              	100.00%
Bootstrap support for E9AFR3 as seed ortholog is 100%.
Bootstrap support for L0PGJ4 as seed ortholog is 100%.

Group of orthologs #38. Best score 636 bits
Score difference with first non-orthologous sequence - L.major:636 P.jiroveci:636

Q4QAC4              	100.00%		L0PF66              	100.00%
Bootstrap support for Q4QAC4 as seed ortholog is 100%.
Bootstrap support for L0PF66 as seed ortholog is 100%.

Group of orthologs #39. Best score 621 bits
Score difference with first non-orthologous sequence - L.major:621 P.jiroveci:621

Q4Q417              	100.00%		L0PG21              	100.00%
Bootstrap support for Q4Q417 as seed ortholog is 100%.
Bootstrap support for L0PG21 as seed ortholog is 100%.

Group of orthologs #40. Best score 617 bits
Score difference with first non-orthologous sequence - L.major:617 P.jiroveci:617

Q4QJA4              	100.00%		L0P971              	100.00%
Bootstrap support for Q4QJA4 as seed ortholog is 100%.
Bootstrap support for L0P971 as seed ortholog is 100%.

Group of orthologs #41. Best score 613 bits
Score difference with first non-orthologous sequence - L.major:400 P.jiroveci:613

E9AFL0              	100.00%		L0PG45              	100.00%
Bootstrap support for E9AFL0 as seed ortholog is 100%.
Bootstrap support for L0PG45 as seed ortholog is 100%.

Group of orthologs #42. Best score 605 bits
Score difference with first non-orthologous sequence - L.major:416 P.jiroveci:605

E9ADA4              	100.00%		L0PER6              	100.00%
Bootstrap support for E9ADA4 as seed ortholog is 100%.
Bootstrap support for L0PER6 as seed ortholog is 100%.

Group of orthologs #43. Best score 604 bits
Score difference with first non-orthologous sequence - L.major:604 P.jiroveci:604

Q4Q3L5              	100.00%		L0P7V0              	100.00%
Bootstrap support for Q4Q3L5 as seed ortholog is 100%.
Bootstrap support for L0P7V0 as seed ortholog is 100%.

Group of orthologs #44. Best score 597 bits
Score difference with first non-orthologous sequence - L.major:447 P.jiroveci:431

Q4QIG8              	100.00%		L0PC93              	100.00%
Bootstrap support for Q4QIG8 as seed ortholog is 100%.
Bootstrap support for L0PC93 as seed ortholog is 100%.

Group of orthologs #45. Best score 595 bits
Score difference with first non-orthologous sequence - L.major:370 P.jiroveci:595

Q4Q5I2              	100.00%		L0PGA5              	100.00%
Bootstrap support for Q4Q5I2 as seed ortholog is 100%.
Bootstrap support for L0PGA5 as seed ortholog is 100%.

Group of orthologs #46. Best score 592 bits
Score difference with first non-orthologous sequence - L.major:481 P.jiroveci:592

Q4Q3R1              	100.00%		L0PEP7              	100.00%
Bootstrap support for Q4Q3R1 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #47. Best score 589 bits
Score difference with first non-orthologous sequence - L.major:344 P.jiroveci:589

Q4Q4U5              	100.00%		L0P945              	100.00%
Bootstrap support for Q4Q4U5 as seed ortholog is 100%.
Bootstrap support for L0P945 as seed ortholog is 100%.

Group of orthologs #48. Best score 586 bits
Score difference with first non-orthologous sequence - L.major:104 P.jiroveci:86

Q4Q1D7              	100.00%		L0PAJ7              	100.00%
Bootstrap support for Q4Q1D7 as seed ortholog is 97%.
Bootstrap support for L0PAJ7 as seed ortholog is 96%.

Group of orthologs #49. Best score 582 bits
Score difference with first non-orthologous sequence - L.major:353 P.jiroveci:35

Q4Q259              	100.00%		L0P8C8              	100.00%
Bootstrap support for Q4Q259 as seed ortholog is 100%.
Bootstrap support for L0P8C8 as seed ortholog is 75%.

Group of orthologs #50. Best score 581 bits
Score difference with first non-orthologous sequence - L.major:361 P.jiroveci:581

Q4QB32              	100.00%		L0P976              	100.00%
Bootstrap support for Q4QB32 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 100%.

Group of orthologs #51. Best score 575 bits
Score difference with first non-orthologous sequence - L.major:575 P.jiroveci:575

Q4Q401              	100.00%		L0PCV7              	100.00%
Bootstrap support for Q4Q401 as seed ortholog is 100%.
Bootstrap support for L0PCV7 as seed ortholog is 100%.

Group of orthologs #52. Best score 572 bits
Score difference with first non-orthologous sequence - L.major:359 P.jiroveci:404

E9AEL4              	100.00%		L0P853              	100.00%
                    	       		L0P8M8              	57.64%
Bootstrap support for E9AEL4 as seed ortholog is 100%.
Bootstrap support for L0P853 as seed ortholog is 100%.

Group of orthologs #53. Best score 571 bits
Score difference with first non-orthologous sequence - L.major:571 P.jiroveci:571

Q4Q124              	100.00%		L0PDJ1              	100.00%
Bootstrap support for Q4Q124 as seed ortholog is 100%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #54. Best score 567 bits
Score difference with first non-orthologous sequence - L.major:567 P.jiroveci:567

Q4QJ53              	100.00%		L0P710              	100.00%
Bootstrap support for Q4QJ53 as seed ortholog is 100%.
Bootstrap support for L0P710 as seed ortholog is 100%.

Group of orthologs #55. Best score 566 bits
Score difference with first non-orthologous sequence - L.major:213 P.jiroveci:566

Q4Q1M0              	100.00%		L0PDM6              	100.00%
Q4Q1M1              	71.12%		
Q4Q594              	8.64%		
Bootstrap support for Q4Q1M0 as seed ortholog is 100%.
Bootstrap support for L0PDM6 as seed ortholog is 100%.

Group of orthologs #56. Best score 562 bits
Score difference with first non-orthologous sequence - L.major:384 P.jiroveci:562

Q4QAA2              	100.00%		L0PD55              	100.00%
Bootstrap support for Q4QAA2 as seed ortholog is 100%.
Bootstrap support for L0PD55 as seed ortholog is 100%.

Group of orthologs #57. Best score 561 bits
Score difference with first non-orthologous sequence - L.major:561 P.jiroveci:561

Q4Q8I2              	100.00%		L0PA62              	100.00%
Bootstrap support for Q4Q8I2 as seed ortholog is 100%.
Bootstrap support for L0PA62 as seed ortholog is 100%.

Group of orthologs #58. Best score 555 bits
Score difference with first non-orthologous sequence - L.major:555 P.jiroveci:555

Q4QE66              	100.00%		L0PC54              	100.00%
Bootstrap support for Q4QE66 as seed ortholog is 100%.
Bootstrap support for L0PC54 as seed ortholog is 100%.

Group of orthologs #59. Best score 554 bits
Score difference with first non-orthologous sequence - L.major:554 P.jiroveci:554

Q4QIY2              	100.00%		L0PAS8              	100.00%
Bootstrap support for Q4QIY2 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #60. Best score 553 bits
Score difference with first non-orthologous sequence - L.major:553 P.jiroveci:553

Q4QDS1              	100.00%		L0PAG2              	100.00%
Q4QDS0              	84.05%		
Bootstrap support for Q4QDS1 as seed ortholog is 100%.
Bootstrap support for L0PAG2 as seed ortholog is 100%.

Group of orthologs #61. Best score 552 bits
Score difference with first non-orthologous sequence - L.major:141 P.jiroveci:552

Q9NF77              	100.00%		L0PCK0              	100.00%
                    	       		L0P7U1              	99.29%
Bootstrap support for Q9NF77 as seed ortholog is 97%.
Bootstrap support for L0PCK0 as seed ortholog is 100%.

Group of orthologs #62. Best score 546 bits
Score difference with first non-orthologous sequence - L.major:101 P.jiroveci:280

Q4QED4              	100.00%		L0PFW1              	100.00%
Bootstrap support for Q4QED4 as seed ortholog is 96%.
Bootstrap support for L0PFW1 as seed ortholog is 100%.

Group of orthologs #63. Best score 541 bits
Score difference with first non-orthologous sequence - L.major:541 P.jiroveci:541

Q4Q893              	100.00%		L0PCC4              	100.00%
Bootstrap support for Q4Q893 as seed ortholog is 100%.
Bootstrap support for L0PCC4 as seed ortholog is 100%.

Group of orthologs #64. Best score 540 bits
Score difference with first non-orthologous sequence - L.major:540 P.jiroveci:540

Q4QGN9              	100.00%		L0P8P8              	100.00%
Bootstrap support for Q4QGN9 as seed ortholog is 100%.
Bootstrap support for L0P8P8 as seed ortholog is 100%.

Group of orthologs #65. Best score 537 bits
Score difference with first non-orthologous sequence - L.major:425 P.jiroveci:424

Q4Q219              	100.00%		L0PBP8              	100.00%
Bootstrap support for Q4Q219 as seed ortholog is 100%.
Bootstrap support for L0PBP8 as seed ortholog is 100%.

Group of orthologs #66. Best score 537 bits
Score difference with first non-orthologous sequence - L.major:305 P.jiroveci:537

Q4Q9Z8              	100.00%		L0PAR0              	100.00%
Bootstrap support for Q4Q9Z8 as seed ortholog is 100%.
Bootstrap support for L0PAR0 as seed ortholog is 100%.

Group of orthologs #67. Best score 535 bits
Score difference with first non-orthologous sequence - L.major:331 P.jiroveci:170

Q9U1E8              	100.00%		L0PA91              	100.00%
Bootstrap support for Q9U1E8 as seed ortholog is 100%.
Bootstrap support for L0PA91 as seed ortholog is 100%.

Group of orthologs #68. Best score 530 bits
Score difference with first non-orthologous sequence - L.major:530 P.jiroveci:530

Q4Q5H2              	100.00%		L0PFU4              	100.00%
Bootstrap support for Q4Q5H2 as seed ortholog is 100%.
Bootstrap support for L0PFU4 as seed ortholog is 100%.

Group of orthologs #69. Best score 529 bits
Score difference with first non-orthologous sequence - L.major:141 P.jiroveci:95

Q4QAM3              	100.00%		L0PB13              	100.00%
Bootstrap support for Q4QAM3 as seed ortholog is 99%.
Bootstrap support for L0PB13 as seed ortholog is 96%.

Group of orthologs #70. Best score 528 bits
Score difference with first non-orthologous sequence - L.major:301 P.jiroveci:430

E9AF31              	100.00%		L0PAF4              	100.00%
Bootstrap support for E9AF31 as seed ortholog is 100%.
Bootstrap support for L0PAF4 as seed ortholog is 100%.

Group of orthologs #71. Best score 517 bits
Score difference with first non-orthologous sequence - L.major:359 P.jiroveci:517

Q4QFY8              	100.00%		L0PGS4              	100.00%
Bootstrap support for Q4QFY8 as seed ortholog is 100%.
Bootstrap support for L0PGS4 as seed ortholog is 100%.

Group of orthologs #72. Best score 512 bits
Score difference with first non-orthologous sequence - L.major:116 P.jiroveci:512

Q4QG01              	100.00%		L0PG61              	100.00%
Q4QHT5              	6.54%		L0PAC9              	7.81%
Bootstrap support for Q4QG01 as seed ortholog is 99%.
Bootstrap support for L0PG61 as seed ortholog is 100%.

Group of orthologs #73. Best score 510 bits
Score difference with first non-orthologous sequence - L.major:510 P.jiroveci:510

Q4QF83              	100.00%		L0PBJ8              	100.00%
Bootstrap support for Q4QF83 as seed ortholog is 100%.
Bootstrap support for L0PBJ8 as seed ortholog is 100%.

Group of orthologs #74. Best score 507 bits
Score difference with first non-orthologous sequence - L.major:507 P.jiroveci:507

Q4QAY7              	100.00%		L0PC79              	100.00%
Q4Q5J0              	16.81%		
Bootstrap support for Q4QAY7 as seed ortholog is 100%.
Bootstrap support for L0PC79 as seed ortholog is 100%.

Group of orthologs #75. Best score 498 bits
Score difference with first non-orthologous sequence - L.major:212 P.jiroveci:498

Q4QD53              	100.00%		L0P7N3              	100.00%
Bootstrap support for Q4QD53 as seed ortholog is 100%.
Bootstrap support for L0P7N3 as seed ortholog is 100%.

Group of orthologs #76. Best score 494 bits
Score difference with first non-orthologous sequence - L.major:494 P.jiroveci:494

Q4Q8N7              	100.00%		L0PC37              	100.00%
Bootstrap support for Q4Q8N7 as seed ortholog is 100%.
Bootstrap support for L0PC37 as seed ortholog is 100%.

Group of orthologs #77. Best score 493 bits
Score difference with first non-orthologous sequence - L.major:493 P.jiroveci:493

Q4QC07              	100.00%		L0P8W6              	100.00%
Bootstrap support for Q4QC07 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #78. Best score 492 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:136

Q4Q8K1              	100.00%		L0PBH4              	100.00%
Bootstrap support for Q4Q8K1 as seed ortholog is 99%.
Bootstrap support for L0PBH4 as seed ortholog is 100%.

Group of orthologs #79. Best score 491 bits
Score difference with first non-orthologous sequence - L.major:165 P.jiroveci:196

Q4Q6W4              	100.00%		L0PEK2              	100.00%
Bootstrap support for Q4Q6W4 as seed ortholog is 99%.
Bootstrap support for L0PEK2 as seed ortholog is 99%.

Group of orthologs #80. Best score 487 bits
Score difference with first non-orthologous sequence - L.major:487 P.jiroveci:487

Q4QDX3              	100.00%		L0PDR3              	100.00%
Q4QDX2              	89.25%		
Bootstrap support for Q4QDX3 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #81. Best score 486 bits
Score difference with first non-orthologous sequence - L.major:311 P.jiroveci:486

Q4Q4U1              	100.00%		L0P7Y5              	100.00%
Bootstrap support for Q4Q4U1 as seed ortholog is 100%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #82. Best score 486 bits
Score difference with first non-orthologous sequence - L.major:150 P.jiroveci:202

Q4QFF7              	100.00%		L0PFG7              	100.00%
Bootstrap support for Q4QFF7 as seed ortholog is 99%.
Bootstrap support for L0PFG7 as seed ortholog is 100%.

Group of orthologs #83. Best score 483 bits
Score difference with first non-orthologous sequence - L.major:483 P.jiroveci:483

Q4Q878              	100.00%		L0PB98              	100.00%
Bootstrap support for Q4Q878 as seed ortholog is 100%.
Bootstrap support for L0PB98 as seed ortholog is 100%.

Group of orthologs #84. Best score 483 bits
Score difference with first non-orthologous sequence - L.major:483 P.jiroveci:483

Q4QI01              	100.00%		L0PD31              	100.00%
Bootstrap support for Q4QI01 as seed ortholog is 100%.
Bootstrap support for L0PD31 as seed ortholog is 100%.

Group of orthologs #85. Best score 478 bits
Score difference with first non-orthologous sequence - L.major:478 P.jiroveci:478

Q4QE33              	100.00%		L0PG19              	100.00%
Bootstrap support for Q4QE33 as seed ortholog is 100%.
Bootstrap support for L0PG19 as seed ortholog is 100%.

Group of orthologs #86. Best score 476 bits
Score difference with first non-orthologous sequence - L.major:106 P.jiroveci:133

Q4Q9W1              	100.00%		L0P7D9              	100.00%
Bootstrap support for Q4Q9W1 as seed ortholog is 99%.
Bootstrap support for L0P7D9 as seed ortholog is 99%.

Group of orthologs #87. Best score 472 bits
Score difference with first non-orthologous sequence - L.major:291 P.jiroveci:472

Q4QAP2              	100.00%		L0PG32              	100.00%
Bootstrap support for Q4QAP2 as seed ortholog is 100%.
Bootstrap support for L0PG32 as seed ortholog is 100%.

Group of orthologs #88. Best score 469 bits
Score difference with first non-orthologous sequence - L.major:469 P.jiroveci:469

Q4Q804              	100.00%		L0PG53              	100.00%
Bootstrap support for Q4Q804 as seed ortholog is 100%.
Bootstrap support for L0PG53 as seed ortholog is 100%.

Group of orthologs #89. Best score 468 bits
Score difference with first non-orthologous sequence - L.major:468 P.jiroveci:468

Q4Q2K0              	100.00%		L0P7T0              	100.00%
Bootstrap support for Q4Q2K0 as seed ortholog is 100%.
Bootstrap support for L0P7T0 as seed ortholog is 100%.

Group of orthologs #90. Best score 468 bits
Score difference with first non-orthologous sequence - L.major:468 P.jiroveci:468

Q4Q3R6              	100.00%		L0PBV5              	100.00%
Bootstrap support for Q4Q3R6 as seed ortholog is 100%.
Bootstrap support for L0PBV5 as seed ortholog is 100%.

Group of orthologs #91. Best score 468 bits
Score difference with first non-orthologous sequence - L.major:468 P.jiroveci:468

Q4QCR1              	100.00%		L0P9R9              	100.00%
Bootstrap support for Q4QCR1 as seed ortholog is 100%.
Bootstrap support for L0P9R9 as seed ortholog is 100%.

Group of orthologs #92. Best score 467 bits
Score difference with first non-orthologous sequence - L.major:351 P.jiroveci:312

Q4QJG2              	100.00%		L0PGL8              	100.00%
Bootstrap support for Q4QJG2 as seed ortholog is 100%.
Bootstrap support for L0PGL8 as seed ortholog is 99%.

Group of orthologs #93. Best score 465 bits
Score difference with first non-orthologous sequence - L.major:272 P.jiroveci:282

Q4QC62              	100.00%		L0PBL6              	100.00%
Bootstrap support for Q4QC62 as seed ortholog is 99%.
Bootstrap support for L0PBL6 as seed ortholog is 100%.

Group of orthologs #94. Best score 462 bits
Score difference with first non-orthologous sequence - L.major:192 P.jiroveci:294

Q4Q1P0              	100.00%		L0P8E7              	100.00%
Bootstrap support for Q4Q1P0 as seed ortholog is 99%.
Bootstrap support for L0P8E7 as seed ortholog is 100%.

Group of orthologs #95. Best score 462 bits
Score difference with first non-orthologous sequence - L.major:462 P.jiroveci:462

Q4QJ13              	100.00%		L0P7V2              	100.00%
Bootstrap support for Q4QJ13 as seed ortholog is 100%.
Bootstrap support for L0P7V2 as seed ortholog is 100%.

Group of orthologs #96. Best score 461 bits
Score difference with first non-orthologous sequence - L.major:92 P.jiroveci:461

Q4QA33              	100.00%		L0P9P7              	100.00%
Bootstrap support for Q4QA33 as seed ortholog is 88%.
Bootstrap support for L0P9P7 as seed ortholog is 100%.

Group of orthologs #97. Best score 461 bits
Score difference with first non-orthologous sequence - L.major:461 P.jiroveci:461

Q9U1E0              	100.00%		L0PG07              	100.00%
Bootstrap support for Q9U1E0 as seed ortholog is 100%.
Bootstrap support for L0PG07 as seed ortholog is 100%.

Group of orthologs #98. Best score 460 bits
Score difference with first non-orthologous sequence - L.major:460 P.jiroveci:460

Q4Q131              	100.00%		L0PA45              	100.00%
Bootstrap support for Q4Q131 as seed ortholog is 100%.
Bootstrap support for L0PA45 as seed ortholog is 100%.

Group of orthologs #99. Best score 456 bits
Score difference with first non-orthologous sequence - L.major:456 P.jiroveci:456

Q4Q2Q6              	100.00%		L0P9D4              	100.00%
Bootstrap support for Q4Q2Q6 as seed ortholog is 100%.
Bootstrap support for L0P9D4 as seed ortholog is 100%.

Group of orthologs #100. Best score 456 bits
Score difference with first non-orthologous sequence - L.major:456 P.jiroveci:456

Q4QGR8              	100.00%		L0PC44              	100.00%
Bootstrap support for Q4QGR8 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #101. Best score 455 bits
Score difference with first non-orthologous sequence - L.major:455 P.jiroveci:455

E9ADF8              	100.00%		L0PFF6              	100.00%
E9ADF9              	100.00%		
Bootstrap support for E9ADF8 as seed ortholog is 100%.
Bootstrap support for E9ADF9 as seed ortholog is 100%.
Bootstrap support for L0PFF6 as seed ortholog is 100%.

Group of orthologs #102. Best score 452 bits
Score difference with first non-orthologous sequence - L.major:321 P.jiroveci:452

E9AD84              	100.00%		L0P6Y2              	100.00%
Bootstrap support for E9AD84 as seed ortholog is 100%.
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #103. Best score 452 bits
Score difference with first non-orthologous sequence - L.major:452 P.jiroveci:452

E9AE82              	100.00%		L0P9J9              	100.00%
Bootstrap support for E9AE82 as seed ortholog is 100%.
Bootstrap support for L0P9J9 as seed ortholog is 100%.

Group of orthologs #104. Best score 447 bits
Score difference with first non-orthologous sequence - L.major:447 P.jiroveci:447

Q4QA34              	100.00%		L0P7R6              	100.00%
                    	       		L0PHF8              	85.20%
Bootstrap support for Q4QA34 as seed ortholog is 100%.
Bootstrap support for L0P7R6 as seed ortholog is 100%.

Group of orthologs #105. Best score 447 bits
Score difference with first non-orthologous sequence - L.major:78 P.jiroveci:118

Q9NHE1              	100.00%		L0P890              	100.00%
Bootstrap support for Q9NHE1 as seed ortholog is 99%.
Bootstrap support for L0P890 as seed ortholog is 99%.

Group of orthologs #106. Best score 446 bits
Score difference with first non-orthologous sequence - L.major:446 P.jiroveci:446

Q4Q6T6              	100.00%		L0PBR9              	100.00%
Bootstrap support for Q4Q6T6 as seed ortholog is 100%.
Bootstrap support for L0PBR9 as seed ortholog is 100%.

Group of orthologs #107. Best score 445 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:294

Q4Q5P5              	100.00%		L0PDY0              	100.00%
Bootstrap support for Q4Q5P5 as seed ortholog is 99%.
Bootstrap support for L0PDY0 as seed ortholog is 100%.

Group of orthologs #108. Best score 444 bits
Score difference with first non-orthologous sequence - L.major:444 P.jiroveci:444

E9ADL4              	100.00%		L0P773              	100.00%
Bootstrap support for E9ADL4 as seed ortholog is 100%.
Bootstrap support for L0P773 as seed ortholog is 100%.

Group of orthologs #109. Best score 442 bits
Score difference with first non-orthologous sequence - L.major:287 P.jiroveci:338

Q4QDN7              	100.00%		L0PGZ9              	100.00%
Q4QDN8              	100.00%		
Bootstrap support for Q4QDN7 as seed ortholog is 100%.
Bootstrap support for Q4QDN8 as seed ortholog is 99%.
Bootstrap support for L0PGZ9 as seed ortholog is 100%.

Group of orthologs #110. Best score 441 bits
Score difference with first non-orthologous sequence - L.major:441 P.jiroveci:441

Q4Q6U5              	100.00%		L0PFQ5              	100.00%
Bootstrap support for Q4Q6U5 as seed ortholog is 100%.
Bootstrap support for L0PFQ5 as seed ortholog is 100%.

Group of orthologs #111. Best score 438 bits
Score difference with first non-orthologous sequence - L.major:438 P.jiroveci:388

O61127              	100.00%		L0PDH7              	100.00%
Bootstrap support for O61127 as seed ortholog is 100%.
Bootstrap support for L0PDH7 as seed ortholog is 100%.

Group of orthologs #112. Best score 438 bits
Score difference with first non-orthologous sequence - L.major:438 P.jiroveci:379

Q4Q6W5              	100.00%		L0PH85              	100.00%
Bootstrap support for Q4Q6W5 as seed ortholog is 100%.
Bootstrap support for L0PH85 as seed ortholog is 100%.

Group of orthologs #113. Best score 437 bits
Score difference with first non-orthologous sequence - L.major:204 P.jiroveci:89

Q4Q0P3              	100.00%		L0PGL4              	100.00%
                    	       		L0P7Q7              	39.02%
Bootstrap support for Q4Q0P3 as seed ortholog is 99%.
Bootstrap support for L0PGL4 as seed ortholog is 96%.

Group of orthologs #114. Best score 436 bits
Score difference with first non-orthologous sequence - L.major:230 P.jiroveci:436

Q4QBE9              	100.00%		L0P905              	100.00%
Q4QBF4              	38.31%		
Q4QBF3              	36.82%		
Q4Q6D6              	23.75%		
Q4Q6D4              	20.86%		
Q4Q6D5              	20.67%		
Q4Q6B9              	19.66%		
Bootstrap support for Q4QBE9 as seed ortholog is 99%.
Bootstrap support for L0P905 as seed ortholog is 100%.

Group of orthologs #115. Best score 436 bits
Score difference with first non-orthologous sequence - L.major:436 P.jiroveci:436

Q4QEL1              	100.00%		L0PG27              	100.00%
Bootstrap support for Q4QEL1 as seed ortholog is 100%.
Bootstrap support for L0PG27 as seed ortholog is 100%.

Group of orthologs #116. Best score 435 bits
Score difference with first non-orthologous sequence - L.major:111 P.jiroveci:435

Q4QJC7              	100.00%		L0P7P1              	100.00%
Bootstrap support for Q4QJC7 as seed ortholog is 99%.
Bootstrap support for L0P7P1 as seed ortholog is 100%.

Group of orthologs #117. Best score 433 bits
Score difference with first non-orthologous sequence - L.major:433 P.jiroveci:433

Q4Q826              	100.00%		L0P6X8              	100.00%
Bootstrap support for Q4Q826 as seed ortholog is 100%.
Bootstrap support for L0P6X8 as seed ortholog is 100%.

Group of orthologs #118. Best score 429 bits
Score difference with first non-orthologous sequence - L.major:243 P.jiroveci:268

Q4Q8B2              	100.00%		L0PC64              	100.00%
Bootstrap support for Q4Q8B2 as seed ortholog is 100%.
Bootstrap support for L0PC64 as seed ortholog is 100%.

Group of orthologs #119. Best score 426 bits
Score difference with first non-orthologous sequence - L.major:426 P.jiroveci:426

Q4QCY4              	100.00%		L0PC65              	100.00%
Bootstrap support for Q4QCY4 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #120. Best score 423 bits
Score difference with first non-orthologous sequence - L.major:423 P.jiroveci:423

Q4Q828              	100.00%		L0PCX1              	100.00%
Q4QFK2              	22.10%		
Bootstrap support for Q4Q828 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #121. Best score 422 bits
Score difference with first non-orthologous sequence - L.major:422 P.jiroveci:422

Q4Q6P5              	100.00%		L0P921              	100.00%
Bootstrap support for Q4Q6P5 as seed ortholog is 100%.
Bootstrap support for L0P921 as seed ortholog is 100%.

Group of orthologs #122. Best score 420 bits
Score difference with first non-orthologous sequence - L.major:229 P.jiroveci:246

O62591              	100.00%		L0P7V6              	100.00%
Bootstrap support for O62591 as seed ortholog is 100%.
Bootstrap support for L0P7V6 as seed ortholog is 100%.

Group of orthologs #123. Best score 418 bits
Score difference with first non-orthologous sequence - L.major:51 P.jiroveci:295

Q4Q7R2              	100.00%		L0P7R1              	100.00%
Bootstrap support for Q4Q7R2 as seed ortholog is 88%.
Bootstrap support for L0P7R1 as seed ortholog is 100%.

Group of orthologs #124. Best score 415 bits
Score difference with first non-orthologous sequence - L.major:415 P.jiroveci:415

Q4QEN2              	100.00%		L0PAP2              	100.00%
Bootstrap support for Q4QEN2 as seed ortholog is 100%.
Bootstrap support for L0PAP2 as seed ortholog is 100%.

Group of orthologs #125. Best score 415 bits
Score difference with first non-orthologous sequence - L.major:415 P.jiroveci:415

Q4QIT4              	100.00%		L0PA93              	100.00%
Bootstrap support for Q4QIT4 as seed ortholog is 100%.
Bootstrap support for L0PA93 as seed ortholog is 100%.

Group of orthologs #126. Best score 415 bits
Score difference with first non-orthologous sequence - L.major:330 P.jiroveci:184

Q4QII2              	100.00%		L0PCS2              	100.00%
Bootstrap support for Q4QII2 as seed ortholog is 100%.
Bootstrap support for L0PCS2 as seed ortholog is 99%.

Group of orthologs #127. Best score 412 bits
Score difference with first non-orthologous sequence - L.major:325 P.jiroveci:412

E9AFD2              	100.00%		L0PET9              	100.00%
Bootstrap support for E9AFD2 as seed ortholog is 100%.
Bootstrap support for L0PET9 as seed ortholog is 100%.

Group of orthologs #128. Best score 411 bits
Score difference with first non-orthologous sequence - L.major:320 P.jiroveci:315

Q4QAA4              	100.00%		L0P8C2              	100.00%
Bootstrap support for Q4QAA4 as seed ortholog is 100%.
Bootstrap support for L0P8C2 as seed ortholog is 100%.

Group of orthologs #129. Best score 407 bits
Score difference with first non-orthologous sequence - L.major:407 P.jiroveci:407

E9AEI0              	100.00%		L0PEE3              	100.00%
E9AEH9              	75.60%		
Bootstrap support for E9AEI0 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #130. Best score 403 bits
Score difference with first non-orthologous sequence - L.major:403 P.jiroveci:403

Q4Q9X5              	100.00%		L0PDC9              	100.00%
Q4Q9X6              	100.00%		
Bootstrap support for Q4Q9X5 as seed ortholog is 100%.
Bootstrap support for Q4Q9X6 as seed ortholog is 100%.
Bootstrap support for L0PDC9 as seed ortholog is 100%.

Group of orthologs #131. Best score 402 bits
Score difference with first non-orthologous sequence - L.major:402 P.jiroveci:402

Q4Q800              	100.00%		L0P8M6              	100.00%
Bootstrap support for Q4Q800 as seed ortholog is 100%.
Bootstrap support for L0P8M6 as seed ortholog is 100%.

Group of orthologs #132. Best score 402 bits
Score difference with first non-orthologous sequence - L.major:13 P.jiroveci:29

Q4Q4W8              	100.00%		L0PFW2              	100.00%
Bootstrap support for Q4Q4W8 as seed ortholog is 56%.
Alternative seed ortholog is Q4Q7Z5 (13 bits away from this cluster)
Bootstrap support for L0PFW2 as seed ortholog is 79%.

Group of orthologs #133. Best score 398 bits
Score difference with first non-orthologous sequence - L.major:398 P.jiroveci:398

Q4QAR0              	100.00%		L0PFN9              	100.00%
                    	       		L0PEF0              	11.13%
Bootstrap support for Q4QAR0 as seed ortholog is 100%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #134. Best score 398 bits
Score difference with first non-orthologous sequence - L.major:98 P.jiroveci:398

Q4Q199              	100.00%		L0P8R6              	100.00%
Bootstrap support for Q4Q199 as seed ortholog is 97%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #135. Best score 397 bits
Score difference with first non-orthologous sequence - L.major:397 P.jiroveci:334

E9AE78              	100.00%		L0PG55              	100.00%
Bootstrap support for E9AE78 as seed ortholog is 100%.
Bootstrap support for L0PG55 as seed ortholog is 100%.

Group of orthologs #136. Best score 394 bits
Score difference with first non-orthologous sequence - L.major:85 P.jiroveci:264

E9AEZ4              	100.00%		L0PE30              	100.00%
Bootstrap support for E9AEZ4 as seed ortholog is 99%.
Bootstrap support for L0PE30 as seed ortholog is 100%.

Group of orthologs #137. Best score 394 bits
Score difference with first non-orthologous sequence - L.major:310 P.jiroveci:394

Q4QCC5              	100.00%		L0PB50              	100.00%
Bootstrap support for Q4QCC5 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #138. Best score 392 bits
Score difference with first non-orthologous sequence - L.major:232 P.jiroveci:392

Q4QC87              	100.00%		L0P8N1              	100.00%
Bootstrap support for Q4QC87 as seed ortholog is 100%.
Bootstrap support for L0P8N1 as seed ortholog is 100%.

Group of orthologs #139. Best score 389 bits
Score difference with first non-orthologous sequence - L.major:389 P.jiroveci:257

E9AEK9              	100.00%		L0PAA4              	100.00%
Bootstrap support for E9AEK9 as seed ortholog is 100%.
Bootstrap support for L0PAA4 as seed ortholog is 100%.

Group of orthologs #140. Best score 386 bits
Score difference with first non-orthologous sequence - L.major:386 P.jiroveci:386

E9ADK8              	100.00%		L0PG05              	100.00%
Bootstrap support for E9ADK8 as seed ortholog is 100%.
Bootstrap support for L0PG05 as seed ortholog is 100%.

Group of orthologs #141. Best score 385 bits
Score difference with first non-orthologous sequence - L.major:385 P.jiroveci:385

Q4Q420              	100.00%		L0PF49              	100.00%
Bootstrap support for Q4Q420 as seed ortholog is 100%.
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #142. Best score 385 bits
Score difference with first non-orthologous sequence - L.major:385 P.jiroveci:385

Q4Q3K1              	100.00%		L0PG48              	100.00%
Bootstrap support for Q4Q3K1 as seed ortholog is 100%.
Bootstrap support for L0PG48 as seed ortholog is 100%.

Group of orthologs #143. Best score 384 bits
Score difference with first non-orthologous sequence - L.major:384 P.jiroveci:384

Q4QDM2              	100.00%		L0PF20              	100.00%
                    	       		L0P917              	96.48%
Bootstrap support for Q4QDM2 as seed ortholog is 100%.
Bootstrap support for L0PF20 as seed ortholog is 100%.

Group of orthologs #144. Best score 381 bits
Score difference with first non-orthologous sequence - L.major:381 P.jiroveci:381

Q4Q2T4              	100.00%		L0PGU0              	100.00%
Bootstrap support for Q4Q2T4 as seed ortholog is 100%.
Bootstrap support for L0PGU0 as seed ortholog is 100%.

Group of orthologs #145. Best score 381 bits
Score difference with first non-orthologous sequence - L.major:381 P.jiroveci:335

Q4QF36              	100.00%		L0PED9              	100.00%
Bootstrap support for Q4QF36 as seed ortholog is 100%.
Bootstrap support for L0PED9 as seed ortholog is 100%.

Group of orthologs #146. Best score 381 bits
Score difference with first non-orthologous sequence - L.major:277 P.jiroveci:381

Q4QJF6              	100.00%		L0PCS3              	100.00%
Bootstrap support for Q4QJF6 as seed ortholog is 100%.
Bootstrap support for L0PCS3 as seed ortholog is 100%.

Group of orthologs #147. Best score 380 bits
Score difference with first non-orthologous sequence - L.major:12 P.jiroveci:380

Q4Q3A5              	100.00%		L0PGU1              	100.00%
                    	       		L0PH47              	5.60%
Bootstrap support for Q4Q3A5 as seed ortholog is 53%.
Alternative seed ortholog is Q4Q4N5 (12 bits away from this cluster)
Bootstrap support for L0PGU1 as seed ortholog is 100%.

Group of orthologs #148. Best score 379 bits
Score difference with first non-orthologous sequence - L.major:379 P.jiroveci:379

Q4QJF1              	100.00%		L0P833              	100.00%
                    	       		L0P765              	36.41%
Bootstrap support for Q4QJF1 as seed ortholog is 100%.
Bootstrap support for L0P833 as seed ortholog is 100%.

Group of orthologs #149. Best score 379 bits
Score difference with first non-orthologous sequence - L.major:379 P.jiroveci:379

Q4QDV9              	100.00%		L0PBF3              	100.00%
Bootstrap support for Q4QDV9 as seed ortholog is 100%.
Bootstrap support for L0PBF3 as seed ortholog is 100%.

Group of orthologs #150. Best score 377 bits
Score difference with first non-orthologous sequence - L.major:377 P.jiroveci:377

Q4QDW8              	100.00%		L0P9G2              	100.00%
Bootstrap support for Q4QDW8 as seed ortholog is 100%.
Bootstrap support for L0P9G2 as seed ortholog is 100%.

Group of orthologs #151. Best score 376 bits
Score difference with first non-orthologous sequence - L.major:214 P.jiroveci:376

Q4Q9R8              	100.00%		L0PDT0              	100.00%
Bootstrap support for Q4Q9R8 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #152. Best score 375 bits
Score difference with first non-orthologous sequence - L.major:152 P.jiroveci:375

Q4QAQ7              	100.00%		L0PEP2              	100.00%
                    	       		L0PE26              	6.55%
Bootstrap support for Q4QAQ7 as seed ortholog is 99%.
Bootstrap support for L0PEP2 as seed ortholog is 100%.

Group of orthologs #153. Best score 373 bits
Score difference with first non-orthologous sequence - L.major:48 P.jiroveci:373

E9ADR1              	100.00%		L0P7X5              	100.00%
Bootstrap support for E9ADR1 as seed ortholog is 95%.
Bootstrap support for L0P7X5 as seed ortholog is 100%.

Group of orthologs #154. Best score 373 bits
Score difference with first non-orthologous sequence - L.major:101 P.jiroveci:151

Q4QHJ7              	100.00%		L0PHY6              	100.00%
Bootstrap support for Q4QHJ7 as seed ortholog is 99%.
Bootstrap support for L0PHY6 as seed ortholog is 100%.

Group of orthologs #155. Best score 372 bits
Score difference with first non-orthologous sequence - L.major:372 P.jiroveci:372

E9AC78              	100.00%		L0PF23              	100.00%
Q4Q9J5              	80.02%		
Bootstrap support for E9AC78 as seed ortholog is 100%.
Bootstrap support for L0PF23 as seed ortholog is 100%.

Group of orthologs #156. Best score 371 bits
Score difference with first non-orthologous sequence - L.major:159 P.jiroveci:79

Q4QGW5              	100.00%		L0P7N1              	100.00%
Bootstrap support for Q4QGW5 as seed ortholog is 99%.
Bootstrap support for L0P7N1 as seed ortholog is 97%.

Group of orthologs #157. Best score 370 bits
Score difference with first non-orthologous sequence - L.major:255 P.jiroveci:284

Q4QDK0              	100.00%		L0P9F6              	100.00%
Bootstrap support for Q4QDK0 as seed ortholog is 100%.
Bootstrap support for L0P9F6 as seed ortholog is 100%.

Group of orthologs #158. Best score 367 bits
Score difference with first non-orthologous sequence - L.major:367 P.jiroveci:367

Q4Q821              	100.00%		L0P7M4              	100.00%
                    	       		L0PH62              	57.54%
Bootstrap support for Q4Q821 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #159. Best score 366 bits
Score difference with first non-orthologous sequence - L.major:366 P.jiroveci:366

Q4QCD2              	100.00%		L0PA88              	100.00%
Bootstrap support for Q4QCD2 as seed ortholog is 100%.
Bootstrap support for L0PA88 as seed ortholog is 100%.

Group of orthologs #160. Best score 366 bits
Score difference with first non-orthologous sequence - L.major:366 P.jiroveci:366

Q4QIT9              	100.00%		L0P8G2              	100.00%
Bootstrap support for Q4QIT9 as seed ortholog is 100%.
Bootstrap support for L0P8G2 as seed ortholog is 100%.

Group of orthologs #161. Best score 365 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:294

E9AFX7              	100.00%		L0P802              	100.00%
Bootstrap support for E9AFX7 as seed ortholog is 87%.
Bootstrap support for L0P802 as seed ortholog is 100%.

Group of orthologs #162. Best score 364 bits
Score difference with first non-orthologous sequence - L.major:364 P.jiroveci:364

Q4Q2K1              	100.00%		L0PB12              	100.00%
Bootstrap support for Q4Q2K1 as seed ortholog is 100%.
Bootstrap support for L0PB12 as seed ortholog is 100%.

Group of orthologs #163. Best score 364 bits
Score difference with first non-orthologous sequence - L.major:364 P.jiroveci:317

Q4Q5J5              	100.00%		L0PER3              	100.00%
Bootstrap support for Q4Q5J5 as seed ortholog is 100%.
Bootstrap support for L0PER3 as seed ortholog is 100%.

Group of orthologs #164. Best score 362 bits
Score difference with first non-orthologous sequence - L.major:174 P.jiroveci:362

Q4Q2Z6              	100.00%		L0P6W8              	100.00%
                    	       		L0PH46              	100.00%
Bootstrap support for Q4Q2Z6 as seed ortholog is 99%.
Bootstrap support for L0P6W8 as seed ortholog is 100%.
Bootstrap support for L0PH46 as seed ortholog is 100%.

Group of orthologs #165. Best score 358 bits
Score difference with first non-orthologous sequence - L.major:75 P.jiroveci:60

Q4QI28              	100.00%		L0PAW8              	100.00%
Bootstrap support for Q4QI28 as seed ortholog is 92%.
Bootstrap support for L0PAW8 as seed ortholog is 84%.

Group of orthologs #166. Best score 356 bits
Score difference with first non-orthologous sequence - L.major:356 P.jiroveci:356

Q4Q9M4              	100.00%		L0PGA8              	100.00%
Bootstrap support for Q4Q9M4 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #167. Best score 355 bits
Score difference with first non-orthologous sequence - L.major:355 P.jiroveci:232

Q4QIG1              	100.00%		L0P7L0              	100.00%
                    	       		L0PCI7              	52.35%
Bootstrap support for Q4QIG1 as seed ortholog is 100%.
Bootstrap support for L0P7L0 as seed ortholog is 100%.

Group of orthologs #168. Best score 355 bits
Score difference with first non-orthologous sequence - L.major:127 P.jiroveci:97

Q4QBN3              	100.00%		L0PA75              	100.00%
Bootstrap support for Q4QBN3 as seed ortholog is 99%.
Bootstrap support for L0PA75 as seed ortholog is 98%.

Group of orthologs #169. Best score 355 bits
Score difference with first non-orthologous sequence - L.major:355 P.jiroveci:197

Q4QH70              	100.00%		L0PAU1              	100.00%
Bootstrap support for Q4QH70 as seed ortholog is 100%.
Bootstrap support for L0PAU1 as seed ortholog is 100%.

Group of orthologs #170. Best score 354 bits
Score difference with first non-orthologous sequence - L.major:354 P.jiroveci:354

O61128              	100.00%		L0PFP2              	100.00%
Bootstrap support for O61128 as seed ortholog is 100%.
Bootstrap support for L0PFP2 as seed ortholog is 100%.

Group of orthologs #171. Best score 354 bits
Score difference with first non-orthologous sequence - L.major:153 P.jiroveci:144

Q4Q8T8              	100.00%		L0PF08              	100.00%
Bootstrap support for Q4Q8T8 as seed ortholog is 99%.
Bootstrap support for L0PF08 as seed ortholog is 99%.

Group of orthologs #172. Best score 351 bits
Score difference with first non-orthologous sequence - L.major:351 P.jiroveci:351

Q4Q997              	100.00%		L0P8Z3              	100.00%
Bootstrap support for Q4Q997 as seed ortholog is 100%.
Bootstrap support for L0P8Z3 as seed ortholog is 100%.

Group of orthologs #173. Best score 351 bits
Score difference with first non-orthologous sequence - L.major:272 P.jiroveci:280

Q4Q7J1              	100.00%		L0PBW1              	100.00%
Bootstrap support for Q4Q7J1 as seed ortholog is 100%.
Bootstrap support for L0PBW1 as seed ortholog is 100%.

Group of orthologs #174. Best score 351 bits
Score difference with first non-orthologous sequence - L.major:257 P.jiroveci:351

Q4Q3X8              	100.00%		L0PGH3              	100.00%
Bootstrap support for Q4Q3X8 as seed ortholog is 100%.
Bootstrap support for L0PGH3 as seed ortholog is 100%.

Group of orthologs #175. Best score 349 bits
Score difference with first non-orthologous sequence - L.major:266 P.jiroveci:349

Q4QI58              	100.00%		L0PAL8              	100.00%
Bootstrap support for Q4QI58 as seed ortholog is 100%.
Bootstrap support for L0PAL8 as seed ortholog is 100%.

Group of orthologs #176. Best score 344 bits
Score difference with first non-orthologous sequence - L.major:344 P.jiroveci:42

Q4Q4W3              	100.00%		L0P9A8              	100.00%
                    	       		L0PHB9              	79.92%
Bootstrap support for Q4Q4W3 as seed ortholog is 100%.
Bootstrap support for L0P9A8 as seed ortholog is 82%.

Group of orthologs #177. Best score 343 bits
Score difference with first non-orthologous sequence - L.major:343 P.jiroveci:343

Q4QCD3              	100.00%		L0P9W2              	100.00%
Bootstrap support for Q4QCD3 as seed ortholog is 100%.
Bootstrap support for L0P9W2 as seed ortholog is 100%.

Group of orthologs #178. Best score 342 bits
Score difference with first non-orthologous sequence - L.major:342 P.jiroveci:342

Q4QCF1              	100.00%		L0PEE4              	100.00%
Bootstrap support for Q4QCF1 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.

Group of orthologs #179. Best score 341 bits
Score difference with first non-orthologous sequence - L.major:236 P.jiroveci:268

Q4Q6T0              	100.00%		L0PAL3              	100.00%
Bootstrap support for Q4Q6T0 as seed ortholog is 100%.
Bootstrap support for L0PAL3 as seed ortholog is 100%.

Group of orthologs #180. Best score 341 bits
Score difference with first non-orthologous sequence - L.major:341 P.jiroveci:341

Q4Q6Q4              	100.00%		L0PIR9              	100.00%
Bootstrap support for Q4Q6Q4 as seed ortholog is 100%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #181. Best score 340 bits
Score difference with first non-orthologous sequence - L.major:340 P.jiroveci:340

Q4Q0E8              	100.00%		L0P7L7              	100.00%
Bootstrap support for Q4Q0E8 as seed ortholog is 100%.
Bootstrap support for L0P7L7 as seed ortholog is 100%.

Group of orthologs #182. Best score 336 bits
Score difference with first non-orthologous sequence - L.major:219 P.jiroveci:336

Q4Q8P6              	100.00%		L0P9S1              	100.00%
Bootstrap support for Q4Q8P6 as seed ortholog is 100%.
Bootstrap support for L0P9S1 as seed ortholog is 100%.

Group of orthologs #183. Best score 335 bits
Score difference with first non-orthologous sequence - L.major:151 P.jiroveci:164

Q4QE27              	100.00%		L0PEA7              	100.00%
Bootstrap support for Q4QE27 as seed ortholog is 99%.
Bootstrap support for L0PEA7 as seed ortholog is 99%.

Group of orthologs #184. Best score 334 bits
Score difference with first non-orthologous sequence - L.major:334 P.jiroveci:334

Q4Q1J6              	100.00%		L0PBA8              	100.00%
E9AG04              	11.08%		
Bootstrap support for Q4Q1J6 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #185. Best score 334 bits
Score difference with first non-orthologous sequence - L.major:7 P.jiroveci:79

O96526              	100.00%		L0PAY3              	100.00%
Bootstrap support for O96526 as seed ortholog is 40%.
Alternative seed ortholog is Q4QC88 (7 bits away from this cluster)
Bootstrap support for L0PAY3 as seed ortholog is 99%.

Group of orthologs #186. Best score 331 bits
Score difference with first non-orthologous sequence - L.major:331 P.jiroveci:331

Q4QAA5              	100.00%		L0PFP0              	100.00%
Q4QFT4              	15.75%		
Bootstrap support for Q4QAA5 as seed ortholog is 100%.
Bootstrap support for L0PFP0 as seed ortholog is 100%.

Group of orthologs #187. Best score 330 bits
Score difference with first non-orthologous sequence - L.major:330 P.jiroveci:330

Q4Q7B4              	100.00%		L0P7Z6              	100.00%
Bootstrap support for Q4Q7B4 as seed ortholog is 100%.
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #188. Best score 328 bits
Score difference with first non-orthologous sequence - L.major:328 P.jiroveci:328

Q4Q078              	100.00%		L0P9I8              	100.00%
Bootstrap support for Q4Q078 as seed ortholog is 100%.
Bootstrap support for L0P9I8 as seed ortholog is 100%.

Group of orthologs #189. Best score 327 bits
Score difference with first non-orthologous sequence - L.major:327 P.jiroveci:327

Q4Q5S8              	100.00%		L0PCR5              	100.00%
                    	       		L0P9C2              	59.47%
Bootstrap support for Q4Q5S8 as seed ortholog is 100%.
Bootstrap support for L0PCR5 as seed ortholog is 100%.

Group of orthologs #190. Best score 327 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:206

Q4QDQ2              	100.00%		L0PBI1              	100.00%
Bootstrap support for Q4QDQ2 as seed ortholog is 84%.
Bootstrap support for L0PBI1 as seed ortholog is 99%.

Group of orthologs #191. Best score 321 bits
Score difference with first non-orthologous sequence - L.major:190 P.jiroveci:116

E9AC07              	100.00%		L0PAI4              	100.00%
                    	       		L0PEY0              	5.04%
Bootstrap support for E9AC07 as seed ortholog is 99%.
Bootstrap support for L0PAI4 as seed ortholog is 99%.

Group of orthologs #192. Best score 321 bits
Score difference with first non-orthologous sequence - L.major:321 P.jiroveci:321

P07382              	100.00%		L0PA65              	100.00%
Bootstrap support for P07382 as seed ortholog is 100%.
Bootstrap support for L0PA65 as seed ortholog is 100%.

Group of orthologs #193. Best score 321 bits
Score difference with first non-orthologous sequence - L.major:82 P.jiroveci:158

Q4QJG6              	100.00%		L0PAY5              	100.00%
Bootstrap support for Q4QJG6 as seed ortholog is 97%.
Bootstrap support for L0PAY5 as seed ortholog is 99%.

Group of orthologs #194. Best score 320 bits
Score difference with first non-orthologous sequence - L.major:320 P.jiroveci:276

Q4FWX5              	100.00%		L0PID0              	100.00%
Bootstrap support for Q4FWX5 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 100%.

Group of orthologs #195. Best score 315 bits
Score difference with first non-orthologous sequence - L.major:315 P.jiroveci:315

Q4QE48              	100.00%		L0PAC7              	100.00%
Bootstrap support for Q4QE48 as seed ortholog is 100%.
Bootstrap support for L0PAC7 as seed ortholog is 100%.

Group of orthologs #196. Best score 314 bits
Score difference with first non-orthologous sequence - L.major:163 P.jiroveci:257

E9AD32              	100.00%		L0PE19              	100.00%
Bootstrap support for E9AD32 as seed ortholog is 100%.
Bootstrap support for L0PE19 as seed ortholog is 100%.

Group of orthologs #197. Best score 312 bits
Score difference with first non-orthologous sequence - L.major:312 P.jiroveci:86

Q4Q4I8              	100.00%		L0P6U6              	100.00%
Bootstrap support for Q4Q4I8 as seed ortholog is 100%.
Bootstrap support for L0P6U6 as seed ortholog is 93%.

Group of orthologs #198. Best score 306 bits
Score difference with first non-orthologous sequence - L.major:306 P.jiroveci:306

Q4QDL1              	100.00%		L0PFQ8              	100.00%
Bootstrap support for Q4QDL1 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #199. Best score 305 bits
Score difference with first non-orthologous sequence - L.major:305 P.jiroveci:305

E9AET6              	100.00%		L0PFJ0              	100.00%
E9AET7              	64.12%		
E9AET9              	58.15%		
E9AET8              	39.00%		
Bootstrap support for E9AET6 as seed ortholog is 100%.
Bootstrap support for L0PFJ0 as seed ortholog is 100%.

Group of orthologs #200. Best score 304 bits
Score difference with first non-orthologous sequence - L.major:203 P.jiroveci:304

Q4QEC3              	100.00%		L0P942              	100.00%
                    	       		L0P7J6              	61.27%
Bootstrap support for Q4QEC3 as seed ortholog is 100%.
Bootstrap support for L0P942 as seed ortholog is 100%.

Group of orthologs #201. Best score 304 bits
Score difference with first non-orthologous sequence - L.major:304 P.jiroveci:304

Q4QHR7              	100.00%		L0PB35              	100.00%
Q4QHR6              	43.34%		
Bootstrap support for Q4QHR7 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 100%.

Group of orthologs #202. Best score 302 bits
Score difference with first non-orthologous sequence - L.major:302 P.jiroveci:302

Q4QGN0              	100.00%		L0PBA9              	100.00%
Bootstrap support for Q4QGN0 as seed ortholog is 100%.
Bootstrap support for L0PBA9 as seed ortholog is 100%.

Group of orthologs #203. Best score 298 bits
Score difference with first non-orthologous sequence - L.major:298 P.jiroveci:298

Q4QEF9              	100.00%		L0P9U8              	100.00%
Bootstrap support for Q4QEF9 as seed ortholog is 100%.
Bootstrap support for L0P9U8 as seed ortholog is 100%.

Group of orthologs #204. Best score 297 bits
Score difference with first non-orthologous sequence - L.major:21 P.jiroveci:297

Q4Q1P5              	100.00%		L0PA85              	100.00%
Bootstrap support for Q4Q1P5 as seed ortholog is 98%.
Bootstrap support for L0PA85 as seed ortholog is 100%.

Group of orthologs #205. Best score 297 bits
Score difference with first non-orthologous sequence - L.major:297 P.jiroveci:297

Q4FX34              	100.00%		L0PF21              	100.00%
Bootstrap support for Q4FX34 as seed ortholog is 100%.
Bootstrap support for L0PF21 as seed ortholog is 100%.

Group of orthologs #206. Best score 297 bits
Score difference with first non-orthologous sequence - L.major:297 P.jiroveci:297

Q4QJ42              	100.00%		L0PI13              	100.00%
Bootstrap support for Q4QJ42 as seed ortholog is 100%.
Bootstrap support for L0PI13 as seed ortholog is 100%.

Group of orthologs #207. Best score 295 bits
Score difference with first non-orthologous sequence - L.major:295 P.jiroveci:295

Q4QAU4              	100.00%		L0P6T3              	100.00%
Bootstrap support for Q4QAU4 as seed ortholog is 100%.
Bootstrap support for L0P6T3 as seed ortholog is 100%.

Group of orthologs #208. Best score 295 bits
Score difference with first non-orthologous sequence - L.major:295 P.jiroveci:295

Q4QAC9              	100.00%		L0PBW7              	100.00%
Bootstrap support for Q4QAC9 as seed ortholog is 100%.
Bootstrap support for L0PBW7 as seed ortholog is 100%.

Group of orthologs #209. Best score 293 bits
Score difference with first non-orthologous sequence - L.major:293 P.jiroveci:293

Q4Q2E4              	100.00%		L0PGT9              	100.00%
Bootstrap support for Q4Q2E4 as seed ortholog is 100%.
Bootstrap support for L0PGT9 as seed ortholog is 100%.

Group of orthologs #210. Best score 293 bits
Score difference with first non-orthologous sequence - L.major:15 P.jiroveci:293

Q4Q7S3              	100.00%		L0PGN1              	100.00%
Bootstrap support for Q4Q7S3 as seed ortholog is 62%.
Alternative seed ortholog is E9AE21 (15 bits away from this cluster)
Bootstrap support for L0PGN1 as seed ortholog is 100%.

Group of orthologs #211. Best score 290 bits
Score difference with first non-orthologous sequence - L.major:76 P.jiroveci:290

E9AEC8              	100.00%		L0PE41              	100.00%
Bootstrap support for E9AEC8 as seed ortholog is 87%.
Bootstrap support for L0PE41 as seed ortholog is 100%.

Group of orthologs #212. Best score 289 bits
Score difference with first non-orthologous sequence - L.major:144 P.jiroveci:289

Q4Q1F5              	100.00%		L0PCP3              	100.00%
Bootstrap support for Q4Q1F5 as seed ortholog is 99%.
Bootstrap support for L0PCP3 as seed ortholog is 100%.

Group of orthologs #213. Best score 289 bits
Score difference with first non-orthologous sequence - L.major:289 P.jiroveci:289

Q4QJI3              	100.00%		L0PHI3              	100.00%
Bootstrap support for Q4QJI3 as seed ortholog is 100%.
Bootstrap support for L0PHI3 as seed ortholog is 100%.

Group of orthologs #214. Best score 287 bits
Score difference with first non-orthologous sequence - L.major:48 P.jiroveci:106

Q4QCE7              	100.00%		L0PCK5              	100.00%
                    	       		L0PGY9              	43.90%
                    	       		L0PA98              	8.35%
Bootstrap support for Q4QCE7 as seed ortholog is 89%.
Bootstrap support for L0PCK5 as seed ortholog is 99%.

Group of orthologs #215. Best score 287 bits
Score difference with first non-orthologous sequence - L.major:287 P.jiroveci:287

E9AE39              	100.00%		L0PDW0              	100.00%
Bootstrap support for E9AE39 as seed ortholog is 100%.
Bootstrap support for L0PDW0 as seed ortholog is 100%.

Group of orthologs #216. Best score 287 bits
Score difference with first non-orthologous sequence - L.major:287 P.jiroveci:161

Q4Q4D7              	100.00%		L0PEW1              	100.00%
Bootstrap support for Q4Q4D7 as seed ortholog is 100%.
Bootstrap support for L0PEW1 as seed ortholog is 99%.

Group of orthologs #217. Best score 287 bits
Score difference with first non-orthologous sequence - L.major:7 P.jiroveci:93

Q4QA20              	100.00%		L0PBP2              	100.00%
Bootstrap support for Q4QA20 as seed ortholog is 57%.
Alternative seed ortholog is Q4Q8J3 (7 bits away from this cluster)
Bootstrap support for L0PBP2 as seed ortholog is 95%.

Group of orthologs #218. Best score 286 bits
Score difference with first non-orthologous sequence - L.major:160 P.jiroveci:286

Q4Q822              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	55.75%
Bootstrap support for Q4Q822 as seed ortholog is 100%.
Bootstrap support for L0PC17 as seed ortholog is 100%.

Group of orthologs #219. Best score 286 bits
Score difference with first non-orthologous sequence - L.major:242 P.jiroveci:286

Q4Q9V9              	100.00%		L0P9V7              	100.00%
Bootstrap support for Q4Q9V9 as seed ortholog is 99%.
Bootstrap support for L0P9V7 as seed ortholog is 100%.

Group of orthologs #220. Best score 286 bits
Score difference with first non-orthologous sequence - L.major:49 P.jiroveci:127

Q4QFH1              	100.00%		L0PEM1              	100.00%
Bootstrap support for Q4QFH1 as seed ortholog is 87%.
Bootstrap support for L0PEM1 as seed ortholog is 99%.

Group of orthologs #221. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:285 P.jiroveci:120

Q4QBG5              	100.00%		L0PD82              	100.00%
                    	       		L0P6Q8              	14.96%
Bootstrap support for Q4QBG5 as seed ortholog is 100%.
Bootstrap support for L0PD82 as seed ortholog is 99%.

Group of orthologs #222. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:29 P.jiroveci:285

E9AFE7              	100.00%		L0PA23              	100.00%
Bootstrap support for E9AFE7 as seed ortholog is 77%.
Bootstrap support for L0PA23 as seed ortholog is 100%.

Group of orthologs #223. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:194 P.jiroveci:285

Q4Q4J6              	100.00%		L0PC99              	100.00%
Bootstrap support for Q4Q4J6 as seed ortholog is 99%.
Bootstrap support for L0PC99 as seed ortholog is 100%.

Group of orthologs #224. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:207 P.jiroveci:218

Q4Q9V1              	100.00%		L0PEF5              	100.00%
Bootstrap support for Q4Q9V1 as seed ortholog is 100%.
Bootstrap support for L0PEF5 as seed ortholog is 100%.

Group of orthologs #225. Best score 285 bits
Score difference with first non-orthologous sequence - L.major:78 P.jiroveci:194

Q4QIV8              	100.00%		L0PB67              	100.00%
Bootstrap support for Q4QIV8 as seed ortholog is 96%.
Bootstrap support for L0PB67 as seed ortholog is 100%.

Group of orthologs #226. Best score 284 bits
Score difference with first non-orthologous sequence - L.major:284 P.jiroveci:284

Q4Q3R4              	100.00%		L0PEX5              	100.00%
Bootstrap support for Q4Q3R4 as seed ortholog is 100%.
Bootstrap support for L0PEX5 as seed ortholog is 100%.

Group of orthologs #227. Best score 283 bits
Score difference with first non-orthologous sequence - L.major:283 P.jiroveci:283

Q4Q3F9              	100.00%		L0PDI6              	100.00%
Bootstrap support for Q4Q3F9 as seed ortholog is 100%.
Bootstrap support for L0PDI6 as seed ortholog is 100%.

Group of orthologs #228. Best score 281 bits
Score difference with first non-orthologous sequence - L.major:11 P.jiroveci:117

Q4Q449              	100.00%		L0P9Z0              	100.00%
Bootstrap support for Q4Q449 as seed ortholog is 62%.
Alternative seed ortholog is Q4QD66 (11 bits away from this cluster)
Bootstrap support for L0P9Z0 as seed ortholog is 99%.

Group of orthologs #229. Best score 280 bits
Score difference with first non-orthologous sequence - L.major:280 P.jiroveci:280

Q9NGR0              	100.00%		L0PHB7              	100.00%
Bootstrap support for Q9NGR0 as seed ortholog is 100%.
Bootstrap support for L0PHB7 as seed ortholog is 100%.

Group of orthologs #230. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:279 P.jiroveci:279

E9AF09              	100.00%		L0PA42              	100.00%
E9AF10              	100.00%		
Bootstrap support for E9AF09 as seed ortholog is 100%.
Bootstrap support for E9AF10 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #231. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:279 P.jiroveci:279

O97213              	100.00%		L0PAG0              	100.00%
Bootstrap support for O97213 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #232. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:279 P.jiroveci:279

E9ADG7              	100.00%		L0PG82              	100.00%
Bootstrap support for E9ADG7 as seed ortholog is 100%.
Bootstrap support for L0PG82 as seed ortholog is 100%.

Group of orthologs #233. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:279 P.jiroveci:279

Q4Q3F0              	100.00%		L0PBG8              	100.00%
Bootstrap support for Q4Q3F0 as seed ortholog is 100%.
Bootstrap support for L0PBG8 as seed ortholog is 100%.

Group of orthologs #234. Best score 279 bits
Score difference with first non-orthologous sequence - L.major:167 P.jiroveci:279

Q4QGG2              	100.00%		L0PB24              	100.00%
Bootstrap support for Q4QGG2 as seed ortholog is 99%.
Bootstrap support for L0PB24 as seed ortholog is 100%.

Group of orthologs #235. Best score 278 bits
Score difference with first non-orthologous sequence - L.major:278 P.jiroveci:278

Q4Q6V0              	100.00%		L0PD32              	100.00%
                    	       		L0PD26              	95.03%
Bootstrap support for Q4Q6V0 as seed ortholog is 100%.
Bootstrap support for L0PD32 as seed ortholog is 100%.

Group of orthologs #236. Best score 278 bits
Score difference with first non-orthologous sequence - L.major:278 P.jiroveci:278

Q4FYU7              	100.00%		L0PA00              	100.00%
Bootstrap support for Q4FYU7 as seed ortholog is 100%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #237. Best score 277 bits
Score difference with first non-orthologous sequence - L.major:277 P.jiroveci:277

Q4Q9Q5              	100.00%		L0PB18              	100.00%
Bootstrap support for Q4Q9Q5 as seed ortholog is 100%.
Bootstrap support for L0PB18 as seed ortholog is 100%.

Group of orthologs #238. Best score 277 bits
Score difference with first non-orthologous sequence - L.major:277 P.jiroveci:277

Q4QBY3              	100.00%		L0PAQ1              	100.00%
Bootstrap support for Q4QBY3 as seed ortholog is 100%.
Bootstrap support for L0PAQ1 as seed ortholog is 100%.

Group of orthologs #239. Best score 276 bits
Score difference with first non-orthologous sequence - L.major:77 P.jiroveci:46

E9ACW0              	100.00%		L0PGJ9              	100.00%
Q4QCG6              	13.35%		
Bootstrap support for E9ACW0 as seed ortholog is 99%.
Bootstrap support for L0PGJ9 as seed ortholog is 86%.

Group of orthologs #240. Best score 275 bits
Score difference with first non-orthologous sequence - L.major:275 P.jiroveci:275

E9ADK4              	100.00%		L0PDK6              	100.00%
Bootstrap support for E9ADK4 as seed ortholog is 100%.
Bootstrap support for L0PDK6 as seed ortholog is 100%.

Group of orthologs #241. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:274 P.jiroveci:274

Q4Q0W1              	100.00%		L0PBY3              	100.00%
Bootstrap support for Q4Q0W1 as seed ortholog is 100%.
Bootstrap support for L0PBY3 as seed ortholog is 100%.

Group of orthologs #242. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:90 P.jiroveci:274

Q4Q8E2              	100.00%		L0P9R8              	100.00%
Bootstrap support for Q4Q8E2 as seed ortholog is 92%.
Bootstrap support for L0P9R8 as seed ortholog is 100%.

Group of orthologs #243. Best score 274 bits
Score difference with first non-orthologous sequence - L.major:274 P.jiroveci:274

Q4Q7G8              	100.00%		L0PBN2              	100.00%
Bootstrap support for Q4Q7G8 as seed ortholog is 100%.
Bootstrap support for L0PBN2 as seed ortholog is 100%.

Group of orthologs #244. Best score 273 bits
Score difference with first non-orthologous sequence - L.major:273 P.jiroveci:120

Q4Q543              	100.00%		L0P9F3              	100.00%
Bootstrap support for Q4Q543 as seed ortholog is 100%.
Bootstrap support for L0P9F3 as seed ortholog is 99%.

Group of orthologs #245. Best score 270 bits
Score difference with first non-orthologous sequence - L.major:270 P.jiroveci:270

Q4QC00              	100.00%		L0PFS8              	100.00%
Bootstrap support for Q4QC00 as seed ortholog is 100%.
Bootstrap support for L0PFS8 as seed ortholog is 100%.

Group of orthologs #246. Best score 267 bits
Score difference with first non-orthologous sequence - L.major:159 P.jiroveci:183

Q4Q0T1              	100.00%		L0PDG5              	100.00%
Bootstrap support for Q4Q0T1 as seed ortholog is 99%.
Bootstrap support for L0PDG5 as seed ortholog is 100%.

Group of orthologs #247. Best score 266 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:266

E9AC43              	100.00%		L0PGR0              	100.00%
E9AC40              	39.55%		
E9AC38              	31.21%		
E9ACH0              	30.09%		
E9AC41              	29.49%		
Bootstrap support for E9AC43 as seed ortholog is 99%.
Bootstrap support for L0PGR0 as seed ortholog is 100%.

Group of orthologs #248. Best score 266 bits
Score difference with first non-orthologous sequence - L.major:176 P.jiroveci:266

Q4Q2D8              	100.00%		L0PDT8              	100.00%
                    	       		L0P9R2              	89.92%
Bootstrap support for Q4Q2D8 as seed ortholog is 100%.
Bootstrap support for L0PDT8 as seed ortholog is 100%.

Group of orthologs #249. Best score 265 bits
Score difference with first non-orthologous sequence - L.major:265 P.jiroveci:265

Q4Q3E2              	100.00%		L0PCN1              	100.00%
Bootstrap support for Q4Q3E2 as seed ortholog is 100%.
Bootstrap support for L0PCN1 as seed ortholog is 100%.

Group of orthologs #250. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:264 P.jiroveci:264

Q4QEU3              	100.00%		L0PEZ2              	100.00%
                    	       		L0PH30              	87.57%
Bootstrap support for Q4QEU3 as seed ortholog is 100%.
Bootstrap support for L0PEZ2 as seed ortholog is 100%.

Group of orthologs #251. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:197 P.jiroveci:264

Q4Q7U7              	100.00%		L0P8G8              	100.00%
Bootstrap support for Q4Q7U7 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #252. Best score 264 bits
Score difference with first non-orthologous sequence - L.major:264 P.jiroveci:264

Q4QAI9              	100.00%		L0PG96              	100.00%
Bootstrap support for Q4QAI9 as seed ortholog is 100%.
Bootstrap support for L0PG96 as seed ortholog is 100%.

Group of orthologs #253. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:172 P.jiroveci:263

Q4Q084              	100.00%		L0P7P4              	100.00%
Bootstrap support for Q4Q084 as seed ortholog is 100%.
Bootstrap support for L0P7P4 as seed ortholog is 100%.

Group of orthologs #254. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:263 P.jiroveci:263

E9ADM6              	100.00%		L0PD18              	100.00%
Bootstrap support for E9ADM6 as seed ortholog is 100%.
Bootstrap support for L0PD18 as seed ortholog is 100%.

Group of orthologs #255. Best score 263 bits
Score difference with first non-orthologous sequence - L.major:263 P.jiroveci:263

Q4Q2J4              	100.00%		L0PCK3              	100.00%
Bootstrap support for Q4Q2J4 as seed ortholog is 100%.
Bootstrap support for L0PCK3 as seed ortholog is 100%.

Group of orthologs #256. Best score 262 bits
Score difference with first non-orthologous sequence - L.major:262 P.jiroveci:262

Q4Q923              	100.00%		L0PDY1              	100.00%
Q4Q925              	100.00%		
Bootstrap support for Q4Q923 as seed ortholog is 100%.
Bootstrap support for Q4Q925 as seed ortholog is 100%.
Bootstrap support for L0PDY1 as seed ortholog is 100%.

Group of orthologs #257. Best score 262 bits
Score difference with first non-orthologous sequence - L.major:77 P.jiroveci:262

E9AFE9              	100.00%		L0P891              	100.00%
Bootstrap support for E9AFE9 as seed ortholog is 98%.
Bootstrap support for L0P891 as seed ortholog is 100%.

Group of orthologs #258. Best score 260 bits
Score difference with first non-orthologous sequence - L.major:260 P.jiroveci:260

Q4Q2I5              	100.00%		L0PC90              	100.00%
Bootstrap support for Q4Q2I5 as seed ortholog is 100%.
Bootstrap support for L0PC90 as seed ortholog is 100%.

Group of orthologs #259. Best score 259 bits
Score difference with first non-orthologous sequence - L.major:259 P.jiroveci:259

Q4Q932              	100.00%		L0PB54              	100.00%
Bootstrap support for Q4Q932 as seed ortholog is 100%.
Bootstrap support for L0PB54 as seed ortholog is 100%.

Group of orthologs #260. Best score 258 bits
Score difference with first non-orthologous sequence - L.major:101 P.jiroveci:258

Q4QGV4              	100.00%		L0PFQ3              	100.00%
Bootstrap support for Q4QGV4 as seed ortholog is 99%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #261. Best score 257 bits
Score difference with first non-orthologous sequence - L.major:257 P.jiroveci:257

Q4QCJ0              	100.00%		L0PCH0              	100.00%
Q4VT70              	99.70%		
Bootstrap support for Q4QCJ0 as seed ortholog is 100%.
Bootstrap support for L0PCH0 as seed ortholog is 100%.

Group of orthologs #262. Best score 257 bits
Score difference with first non-orthologous sequence - L.major:257 P.jiroveci:257

Q4Q1M7              	100.00%		L0P9T2              	100.00%
Bootstrap support for Q4Q1M7 as seed ortholog is 100%.
Bootstrap support for L0P9T2 as seed ortholog is 100%.

Group of orthologs #263. Best score 257 bits
Score difference with first non-orthologous sequence - L.major:257 P.jiroveci:257

Q4QIK7              	100.00%		L0P9C9              	100.00%
Bootstrap support for Q4QIK7 as seed ortholog is 100%.
Bootstrap support for L0P9C9 as seed ortholog is 100%.

Group of orthologs #264. Best score 257 bits
Score difference with first non-orthologous sequence - L.major:8 P.jiroveci:257

Q4QDJ5              	100.00%		L0PG34              	100.00%
Bootstrap support for Q4QDJ5 as seed ortholog is 56%.
Alternative seed ortholog is Q4Q881 (8 bits away from this cluster)
Bootstrap support for L0PG34 as seed ortholog is 100%.

Group of orthologs #265. Best score 255 bits
Score difference with first non-orthologous sequence - L.major:255 P.jiroveci:255

Q4QEZ6              	100.00%		L0PFF9              	100.00%
Q4QB17              	10.90%		
Bootstrap support for Q4QEZ6 as seed ortholog is 100%.
Bootstrap support for L0PFF9 as seed ortholog is 100%.

Group of orthologs #266. Best score 254 bits
Score difference with first non-orthologous sequence - L.major:254 P.jiroveci:254

Q4Q6A1              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	74.23%
Bootstrap support for Q4Q6A1 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #267. Best score 254 bits
Score difference with first non-orthologous sequence - L.major:113 P.jiroveci:254

Q4QCX5              	100.00%		L0PB97              	100.00%
Bootstrap support for Q4QCX5 as seed ortholog is 99%.
Bootstrap support for L0PB97 as seed ortholog is 100%.

Group of orthologs #268. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.jiroveci:252

E9ACB2              	100.00%		L0PAN7              	100.00%
Bootstrap support for E9ACB2 as seed ortholog is 100%.
Bootstrap support for L0PAN7 as seed ortholog is 100%.

Group of orthologs #269. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:211 P.jiroveci:202

E9ACE1              	100.00%		L0PFT9              	100.00%
Bootstrap support for E9ACE1 as seed ortholog is 100%.
Bootstrap support for L0PFT9 as seed ortholog is 100%.

Group of orthologs #270. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:252 P.jiroveci:252

Q4Q1Q9              	100.00%		L0PCJ2              	100.00%
Bootstrap support for Q4Q1Q9 as seed ortholog is 100%.
Bootstrap support for L0PCJ2 as seed ortholog is 100%.

Group of orthologs #271. Best score 252 bits
Score difference with first non-orthologous sequence - L.major:147 P.jiroveci:252

Q4QFS8              	100.00%		L0PA41              	100.00%
Bootstrap support for Q4QFS8 as seed ortholog is 99%.
Bootstrap support for L0PA41 as seed ortholog is 100%.

Group of orthologs #272. Best score 251 bits
Score difference with first non-orthologous sequence - L.major:251 P.jiroveci:251

E9AFK8              	100.00%		L0PET2              	100.00%
                    	       		L0PAE5              	84.78%
Bootstrap support for E9AFK8 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 100%.

Group of orthologs #273. Best score 250 bits
Score difference with first non-orthologous sequence - L.major:250 P.jiroveci:250

Q4Q9F9              	100.00%		L0P7B5              	100.00%
Bootstrap support for Q4Q9F9 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #274. Best score 249 bits
Score difference with first non-orthologous sequence - L.major:249 P.jiroveci:249

Q4QFP9              	100.00%		L0PEL5              	100.00%
                    	       		L0PGC2              	61.66%
Bootstrap support for Q4QFP9 as seed ortholog is 100%.
Bootstrap support for L0PEL5 as seed ortholog is 100%.

Group of orthologs #275. Best score 248 bits
Score difference with first non-orthologous sequence - L.major:156 P.jiroveci:248

Q4Q870              	100.00%		L0P6U2              	100.00%
Bootstrap support for Q4Q870 as seed ortholog is 99%.
Bootstrap support for L0P6U2 as seed ortholog is 100%.

Group of orthologs #276. Best score 247 bits
Score difference with first non-orthologous sequence - L.major:247 P.jiroveci:247

Q4Q8V5              	100.00%		L0PI36              	100.00%
Bootstrap support for Q4Q8V5 as seed ortholog is 100%.
Bootstrap support for L0PI36 as seed ortholog is 100%.

Group of orthologs #277. Best score 246 bits
Score difference with first non-orthologous sequence - L.major:246 P.jiroveci:246

Q4Q286              	100.00%		L0PGF5              	100.00%
Bootstrap support for Q4Q286 as seed ortholog is 100%.
Bootstrap support for L0PGF5 as seed ortholog is 100%.

Group of orthologs #278. Best score 244 bits
Score difference with first non-orthologous sequence - L.major:244 P.jiroveci:244

Q4Q1I2              	100.00%		L0P7E2              	100.00%
Q4Q1I3              	100.00%		
Bootstrap support for Q4Q1I2 as seed ortholog is 100%.
Bootstrap support for Q4Q1I3 as seed ortholog is 100%.
Bootstrap support for L0P7E2 as seed ortholog is 100%.

Group of orthologs #279. Best score 244 bits
Score difference with first non-orthologous sequence - L.major:195 P.jiroveci:244

Q4Q7H4              	100.00%		L0P8L5              	100.00%
Bootstrap support for Q4Q7H4 as seed ortholog is 100%.
Bootstrap support for L0P8L5 as seed ortholog is 100%.

Group of orthologs #280. Best score 244 bits
Score difference with first non-orthologous sequence - L.major:181 P.jiroveci:244

Q4QJ98              	100.00%		L0PDF2              	100.00%
Bootstrap support for Q4QJ98 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #281. Best score 244 bits
Score difference with first non-orthologous sequence - L.major:244 P.jiroveci:244

Q868B1              	100.00%		L0PFI8              	100.00%
Bootstrap support for Q868B1 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #282. Best score 243 bits
Score difference with first non-orthologous sequence - L.major:243 P.jiroveci:243

E9ADI3              	100.00%		L0PE74              	100.00%
Bootstrap support for E9ADI3 as seed ortholog is 100%.
Bootstrap support for L0PE74 as seed ortholog is 100%.

Group of orthologs #283. Best score 243 bits
Score difference with first non-orthologous sequence - L.major:243 P.jiroveci:243

Q4Q9L9              	100.00%		L0PBM9              	100.00%
Bootstrap support for Q4Q9L9 as seed ortholog is 100%.
Bootstrap support for L0PBM9 as seed ortholog is 100%.

Group of orthologs #284. Best score 243 bits
Score difference with first non-orthologous sequence - L.major:243 P.jiroveci:243

Q4QE53              	100.00%		L0PCY9              	100.00%
Bootstrap support for Q4QE53 as seed ortholog is 100%.
Bootstrap support for L0PCY9 as seed ortholog is 100%.

Group of orthologs #285. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:83 P.jiroveci:106

E9AFM8              	100.00%		L0P966              	100.00%
Bootstrap support for E9AFM8 as seed ortholog is 92%.
Bootstrap support for L0P966 as seed ortholog is 99%.

Group of orthologs #286. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:242 P.jiroveci:242

P84155              	100.00%		L0PD99              	100.00%
Bootstrap support for P84155 as seed ortholog is 100%.
Bootstrap support for L0PD99 as seed ortholog is 100%.

Group of orthologs #287. Best score 242 bits
Score difference with first non-orthologous sequence - L.major:242 P.jiroveci:242

Q4QIP6              	100.00%		L0PCH8              	100.00%
Bootstrap support for Q4QIP6 as seed ortholog is 100%.
Bootstrap support for L0PCH8 as seed ortholog is 100%.

Group of orthologs #288. Best score 241 bits
Score difference with first non-orthologous sequence - L.major:241 P.jiroveci:241

E9ADM4              	100.00%		L0PAS3              	100.00%
Bootstrap support for E9ADM4 as seed ortholog is 100%.
Bootstrap support for L0PAS3 as seed ortholog is 100%.

Group of orthologs #289. Best score 241 bits
Score difference with first non-orthologous sequence - L.major:241 P.jiroveci:241

Q4QFX1              	100.00%		L0PFY3              	100.00%
Bootstrap support for Q4QFX1 as seed ortholog is 100%.
Bootstrap support for L0PFY3 as seed ortholog is 100%.

Group of orthologs #290. Best score 240 bits
Score difference with first non-orthologous sequence - L.major:240 P.jiroveci:240

Q4QDU3              	100.00%		L0P9C8              	100.00%
Bootstrap support for Q4QDU3 as seed ortholog is 100%.
Bootstrap support for L0P9C8 as seed ortholog is 100%.

Group of orthologs #291. Best score 240 bits
Score difference with first non-orthologous sequence - L.major:240 P.jiroveci:240

Q4QCG8              	100.00%		L0PFC2              	100.00%
Bootstrap support for Q4QCG8 as seed ortholog is 100%.
Bootstrap support for L0PFC2 as seed ortholog is 100%.

Group of orthologs #292. Best score 239 bits
Score difference with first non-orthologous sequence - L.major:239 P.jiroveci:239

Q4Q1Y7              	100.00%		L0PEV9              	100.00%
Bootstrap support for Q4Q1Y7 as seed ortholog is 100%.
Bootstrap support for L0PEV9 as seed ortholog is 100%.

Group of orthologs #293. Best score 239 bits
Score difference with first non-orthologous sequence - L.major:239 P.jiroveci:239

Q4Q6Y9              	100.00%		L0PCB2              	100.00%
Bootstrap support for Q4Q6Y9 as seed ortholog is 100%.
Bootstrap support for L0PCB2 as seed ortholog is 100%.

Group of orthologs #294. Best score 238 bits
Score difference with first non-orthologous sequence - L.major:238 P.jiroveci:238

Q4Q7R0              	100.00%		L0PEB2              	100.00%
Bootstrap support for Q4Q7R0 as seed ortholog is 100%.
Bootstrap support for L0PEB2 as seed ortholog is 100%.

Group of orthologs #295. Best score 237 bits
Score difference with first non-orthologous sequence - L.major:237 P.jiroveci:237

Q4Q134              	100.00%		L0PF83              	100.00%
Q4Q135              	100.00%		
Bootstrap support for Q4Q134 as seed ortholog is 100%.
Bootstrap support for Q4Q135 as seed ortholog is 100%.
Bootstrap support for L0PF83 as seed ortholog is 100%.

Group of orthologs #296. Best score 237 bits
Score difference with first non-orthologous sequence - L.major:237 P.jiroveci:237

Q4Q2T3              	100.00%		L0PF30              	100.00%
Bootstrap support for Q4Q2T3 as seed ortholog is 100%.
Bootstrap support for L0PF30 as seed ortholog is 100%.

Group of orthologs #297. Best score 236 bits
Score difference with first non-orthologous sequence - L.major:236 P.jiroveci:236

Q4QHU0              	100.00%		L0PFZ0              	100.00%
Bootstrap support for Q4QHU0 as seed ortholog is 100%.
Bootstrap support for L0PFZ0 as seed ortholog is 100%.

Group of orthologs #298. Best score 235 bits
Score difference with first non-orthologous sequence - L.major:235 P.jiroveci:235

E9AEI4              	100.00%		L0P861              	100.00%
Bootstrap support for E9AEI4 as seed ortholog is 100%.
Bootstrap support for L0P861 as seed ortholog is 100%.

Group of orthologs #299. Best score 235 bits
Score difference with first non-orthologous sequence - L.major:159 P.jiroveci:235

Q4QG26              	100.00%		L0PBQ9              	100.00%
Bootstrap support for Q4QG26 as seed ortholog is 99%.
Bootstrap support for L0PBQ9 as seed ortholog is 100%.

Group of orthologs #300. Best score 234 bits
Score difference with first non-orthologous sequence - L.major:234 P.jiroveci:234

E9AEY8              	100.00%		L0PGJ5              	100.00%
Bootstrap support for E9AEY8 as seed ortholog is 100%.
Bootstrap support for L0PGJ5 as seed ortholog is 100%.

Group of orthologs #301. Best score 234 bits
Score difference with first non-orthologous sequence - L.major:234 P.jiroveci:234

Q4Q884              	100.00%		L0P8A6              	100.00%
Bootstrap support for Q4Q884 as seed ortholog is 100%.
Bootstrap support for L0P8A6 as seed ortholog is 100%.

Group of orthologs #302. Best score 233 bits
Score difference with first non-orthologous sequence - L.major:233 P.jiroveci:233

Q4QIG0              	100.00%		L0PB82              	100.00%
Bootstrap support for Q4QIG0 as seed ortholog is 100%.
Bootstrap support for L0PB82 as seed ortholog is 100%.

Group of orthologs #303. Best score 232 bits
Score difference with first non-orthologous sequence - L.major:232 P.jiroveci:103

Q4QC38              	100.00%		L0PB21              	100.00%
Bootstrap support for Q4QC38 as seed ortholog is 100%.
Bootstrap support for L0PB21 as seed ortholog is 98%.

Group of orthologs #304. Best score 232 bits
Score difference with first non-orthologous sequence - L.major:232 P.jiroveci:232

Q4QFU3              	100.00%		L0PES3              	100.00%
Bootstrap support for Q4QFU3 as seed ortholog is 100%.
Bootstrap support for L0PES3 as seed ortholog is 100%.

Group of orthologs #305. Best score 231 bits
Score difference with first non-orthologous sequence - L.major:165 P.jiroveci:231

Q4Q1J8              	100.00%		L0PDV0              	100.00%
Bootstrap support for Q4Q1J8 as seed ortholog is 99%.
Bootstrap support for L0PDV0 as seed ortholog is 100%.

Group of orthologs #306. Best score 231 bits
Score difference with first non-orthologous sequence - L.major:187 P.jiroveci:231

Q4QEK4              	100.00%		L0PD03              	100.00%
Bootstrap support for Q4QEK4 as seed ortholog is 100%.
Bootstrap support for L0PD03 as seed ortholog is 100%.

Group of orthologs #307. Best score 230 bits
Score difference with first non-orthologous sequence - L.major:53 P.jiroveci:117

Q4Q3Z4              	100.00%		L0P6V9              	100.00%
Q4QI56              	25.99%		L0PBF0              	10.02%
Q4Q0M2              	24.74%		
Bootstrap support for Q4Q3Z4 as seed ortholog is 95%.
Bootstrap support for L0P6V9 as seed ortholog is 99%.

Group of orthologs #308. Best score 228 bits
Score difference with first non-orthologous sequence - L.major:228 P.jiroveci:228

E9AF57              	100.00%		L0PBD7              	100.00%
Bootstrap support for E9AF57 as seed ortholog is 100%.
Bootstrap support for L0PBD7 as seed ortholog is 100%.

Group of orthologs #309. Best score 228 bits
Score difference with first non-orthologous sequence - L.major:228 P.jiroveci:228

Q4Q0Z3              	100.00%		L0PCA7              	100.00%
Bootstrap support for Q4Q0Z3 as seed ortholog is 100%.
Bootstrap support for L0PCA7 as seed ortholog is 100%.

Group of orthologs #310. Best score 228 bits
Score difference with first non-orthologous sequence - L.major:228 P.jiroveci:228

Q4QH56              	100.00%		L0PB03              	100.00%
Bootstrap support for Q4QH56 as seed ortholog is 100%.
Bootstrap support for L0PB03 as seed ortholog is 100%.

Group of orthologs #311. Best score 227 bits
Score difference with first non-orthologous sequence - L.major:27 P.jiroveci:103

E9ACV0              	100.00%		L0PGH8              	100.00%
Bootstrap support for E9ACV0 as seed ortholog is 76%.
Bootstrap support for L0PGH8 as seed ortholog is 99%.

Group of orthologs #312. Best score 227 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:227

Q4QD19              	100.00%		L0P9J7              	100.00%
Bootstrap support for Q4QD19 as seed ortholog is 96%.
Bootstrap support for L0P9J7 as seed ortholog is 100%.

Group of orthologs #313. Best score 226 bits
Score difference with first non-orthologous sequence - L.major:226 P.jiroveci:226

Q4QDB1              	100.00%		L0P9X7              	100.00%
Bootstrap support for Q4QDB1 as seed ortholog is 100%.
Bootstrap support for L0P9X7 as seed ortholog is 100%.

Group of orthologs #314. Best score 225 bits
Score difference with first non-orthologous sequence - L.major:137 P.jiroveci:225

E9ACV1              	100.00%		L0P9P0              	100.00%
Bootstrap support for E9ACV1 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #315. Best score 225 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:225

Q4Q3K2              	100.00%		L0PDH8              	100.00%
Bootstrap support for Q4Q3K2 as seed ortholog is 100%.
Bootstrap support for L0PDH8 as seed ortholog is 100%.

Group of orthologs #316. Best score 224 bits
Score difference with first non-orthologous sequence - L.major:65 P.jiroveci:4

Q4Q5Y0              	100.00%		L0P9E4              	100.00%
Q6IMM3              	42.86%		
Bootstrap support for Q4Q5Y0 as seed ortholog is 99%.
Bootstrap support for L0P9E4 as seed ortholog is 56%.
Alternative seed ortholog is L0PC59 (4 bits away from this cluster)

Group of orthologs #317. Best score 223 bits
Score difference with first non-orthologous sequence - L.major:223 P.jiroveci:223

Q6XFB3              	100.00%		L0PEC0              	100.00%
Bootstrap support for Q6XFB3 as seed ortholog is 100%.
Bootstrap support for L0PEC0 as seed ortholog is 100%.

Group of orthologs #318. Best score 222 bits
Score difference with first non-orthologous sequence - L.major:222 P.jiroveci:222

Q4QG31              	100.00%		L0PCG4              	100.00%
Bootstrap support for Q4QG31 as seed ortholog is 100%.
Bootstrap support for L0PCG4 as seed ortholog is 100%.

Group of orthologs #319. Best score 221 bits
Score difference with first non-orthologous sequence - L.major:134 P.jiroveci:111

Q9GNC1              	100.00%		L0P876              	100.00%
Bootstrap support for Q9GNC1 as seed ortholog is 100%.
Bootstrap support for L0P876 as seed ortholog is 100%.

Group of orthologs #320. Best score 220 bits
Score difference with first non-orthologous sequence - L.major:103 P.jiroveci:220

Q4Q3J4              	100.00%		L0PE61              	100.00%
Q4Q3J2              	58.06%		
Q4Q3J3              	26.80%		
Q4QDF0              	6.70%		
Bootstrap support for Q4Q3J4 as seed ortholog is 99%.
Bootstrap support for L0PE61 as seed ortholog is 100%.

Group of orthologs #321. Best score 220 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:220

Q4Q9E8              	100.00%		L0PG10              	100.00%
Bootstrap support for Q4Q9E8 as seed ortholog is 92%.
Bootstrap support for L0PG10 as seed ortholog is 100%.

Group of orthologs #322. Best score 219 bits
Score difference with first non-orthologous sequence - L.major:69 P.jiroveci:219

Q4QFL6              	100.00%		L0PE98              	100.00%
Bootstrap support for Q4QFL6 as seed ortholog is 94%.
Bootstrap support for L0PE98 as seed ortholog is 100%.

Group of orthologs #323. Best score 218 bits
Score difference with first non-orthologous sequence - L.major:218 P.jiroveci:162

E9AC56              	100.00%		L0PBY2              	100.00%
Bootstrap support for E9AC56 as seed ortholog is 100%.
Bootstrap support for L0PBY2 as seed ortholog is 99%.

Group of orthologs #324. Best score 218 bits
Score difference with first non-orthologous sequence - L.major:144 P.jiroveci:218

Q4Q9H4              	100.00%		L0PCG0              	100.00%
Bootstrap support for Q4Q9H4 as seed ortholog is 100%.
Bootstrap support for L0PCG0 as seed ortholog is 100%.

Group of orthologs #325. Best score 217 bits
Score difference with first non-orthologous sequence - L.major:153 P.jiroveci:112

E9ACB3              	100.00%		L0PDB7              	100.00%
Bootstrap support for E9ACB3 as seed ortholog is 99%.
Bootstrap support for L0PDB7 as seed ortholog is 99%.

Group of orthologs #326. Best score 217 bits
Score difference with first non-orthologous sequence - L.major:217 P.jiroveci:217

Q4Q1R5              	100.00%		L0PE17              	100.00%
Bootstrap support for Q4Q1R5 as seed ortholog is 100%.
Bootstrap support for L0PE17 as seed ortholog is 100%.

Group of orthologs #327. Best score 216 bits
Score difference with first non-orthologous sequence - L.major:216 P.jiroveci:216

Q4Q969              	100.00%		L0PBT8              	100.00%
Bootstrap support for Q4Q969 as seed ortholog is 100%.
Bootstrap support for L0PBT8 as seed ortholog is 100%.

Group of orthologs #328. Best score 215 bits
Score difference with first non-orthologous sequence - L.major:215 P.jiroveci:215

O97209              	100.00%		L0P9I4              	100.00%
Bootstrap support for O97209 as seed ortholog is 100%.
Bootstrap support for L0P9I4 as seed ortholog is 100%.

Group of orthologs #329. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:89 P.jiroveci:65

Q4Q0X4              	100.00%		L0PBM6              	100.00%
Bootstrap support for Q4Q0X4 as seed ortholog is 98%.
Bootstrap support for L0PBM6 as seed ortholog is 96%.

Group of orthologs #330. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:214 P.jiroveci:214

Q4Q7T4              	100.00%		L0PDD5              	100.00%
Bootstrap support for Q4Q7T4 as seed ortholog is 100%.
Bootstrap support for L0PDD5 as seed ortholog is 100%.

Group of orthologs #331. Best score 214 bits
Score difference with first non-orthologous sequence - L.major:214 P.jiroveci:214

Q4Q6Q0              	100.00%		L0PEM3              	100.00%
Bootstrap support for Q4Q6Q0 as seed ortholog is 100%.
Bootstrap support for L0PEM3 as seed ortholog is 100%.

Group of orthologs #332. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:55 P.jiroveci:128

O97016              	100.00%		L0PG51              	100.00%
Bootstrap support for O97016 as seed ortholog is 95%.
Bootstrap support for L0PG51 as seed ortholog is 99%.

Group of orthologs #333. Best score 212 bits
Score difference with first non-orthologous sequence - L.major:212 P.jiroveci:212

Q4QBL1              	100.00%		L0PFC9              	100.00%
Bootstrap support for Q4QBL1 as seed ortholog is 100%.
Bootstrap support for L0PFC9 as seed ortholog is 100%.

Group of orthologs #334. Best score 211 bits
Score difference with first non-orthologous sequence - L.major:95 P.jiroveci:211

Q4QD77              	100.00%		L0PCD9              	100.00%
Q4QD80              	8.56%		
Q4QD79              	8.17%		
Q4QD78              	7.53%		
Q4QD82              	5.71%		
Bootstrap support for Q4QD77 as seed ortholog is 67%.
Alternative seed ortholog is Q4QD81 (95 bits away from this cluster)
Bootstrap support for L0PCD9 as seed ortholog is 100%.

Group of orthologs #335. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.jiroveci:210

E9AE98              	100.00%		L0PEC6              	100.00%
Bootstrap support for E9AE98 as seed ortholog is 100%.
Bootstrap support for L0PEC6 as seed ortholog is 100%.

Group of orthologs #336. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.jiroveci:210

Q4QE40              	100.00%		L0PIV4              	100.00%
Bootstrap support for Q4QE40 as seed ortholog is 100%.
Bootstrap support for L0PIV4 as seed ortholog is 100%.

Group of orthologs #337. Best score 210 bits
Score difference with first non-orthologous sequence - L.major:210 P.jiroveci:61

Q4QIY1              	100.00%		L0PDD3              	100.00%
Bootstrap support for Q4QIY1 as seed ortholog is 100%.
Bootstrap support for L0PDD3 as seed ortholog is 98%.

Group of orthologs #338. Best score 209 bits
Score difference with first non-orthologous sequence - L.major:209 P.jiroveci:209

Q4QBI4              	100.00%		L0PA72              	100.00%
Bootstrap support for Q4QBI4 as seed ortholog is 100%.
Bootstrap support for L0PA72 as seed ortholog is 100%.

Group of orthologs #339. Best score 208 bits
Score difference with first non-orthologous sequence - L.major:55 P.jiroveci:208

E9ADV5              	6.19%		L0P8E8              	100.00%
Q4QFM3              	100.00%		L0PEB0              	100.00%
Q4QEL9              	5.26%		
Bootstrap support for Q4QFM3 as seed ortholog is 69%.
Alternative seed ortholog is Q4QEL8 (55 bits away from this cluster)
Bootstrap support for L0P8E8 as seed ortholog is 100%.
Bootstrap support for L0PEB0 as seed ortholog is 100%.

Group of orthologs #340. Best score 208 bits
Score difference with first non-orthologous sequence - L.major:208 P.jiroveci:208

Q4QE67              	100.00%		L0PD41              	100.00%
Bootstrap support for Q4QE67 as seed ortholog is 100%.
Bootstrap support for L0PD41 as seed ortholog is 100%.

Group of orthologs #341. Best score 208 bits
Score difference with first non-orthologous sequence - L.major:208 P.jiroveci:208

Q4QFV4              	100.00%		L0PFU1              	100.00%
Bootstrap support for Q4QFV4 as seed ortholog is 100%.
Bootstrap support for L0PFU1 as seed ortholog is 100%.

Group of orthologs #342. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.jiroveci:49

Q4Q0Q3              	100.00%		L0PAQ7              	100.00%
Bootstrap support for Q4Q0Q3 as seed ortholog is 100%.
Bootstrap support for L0PAQ7 as seed ortholog is 93%.

Group of orthologs #343. Best score 207 bits
Score difference with first non-orthologous sequence - L.major:207 P.jiroveci:207

Q4Q0P6              	100.00%		L0PBJ1              	100.00%
Bootstrap support for Q4Q0P6 as seed ortholog is 100%.
Bootstrap support for L0PBJ1 as seed ortholog is 100%.

Group of orthologs #344. Best score 206 bits
Score difference with first non-orthologous sequence - L.major:206 P.jiroveci:206

Q4Q0M3              	100.00%		L0P8V0              	100.00%
Bootstrap support for Q4Q0M3 as seed ortholog is 100%.
Bootstrap support for L0P8V0 as seed ortholog is 100%.

Group of orthologs #345. Best score 206 bits
Score difference with first non-orthologous sequence - L.major:206 P.jiroveci:206

Q4Q2N6              	100.00%		L0PG44              	100.00%
Bootstrap support for Q4Q2N6 as seed ortholog is 100%.
Bootstrap support for L0PG44 as seed ortholog is 100%.

Group of orthologs #346. Best score 206 bits
Score difference with first non-orthologous sequence - L.major:206 P.jiroveci:206

Q4QCH3              	100.00%		L0P8T4              	100.00%
Bootstrap support for Q4QCH3 as seed ortholog is 100%.
Bootstrap support for L0P8T4 as seed ortholog is 100%.

Group of orthologs #347. Best score 206 bits
Score difference with first non-orthologous sequence - L.major:206 P.jiroveci:206

Q4QJ88              	100.00%		L0PBC5              	100.00%
Bootstrap support for Q4QJ88 as seed ortholog is 100%.
Bootstrap support for L0PBC5 as seed ortholog is 100%.

Group of orthologs #348. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:205 P.jiroveci:118

Q4QFG6              	100.00%		L0P7L8              	100.00%
Q4QFQ0              	23.73%		L0P7X4              	5.14%
Bootstrap support for Q4QFG6 as seed ortholog is 100%.
Bootstrap support for L0P7L8 as seed ortholog is 99%.

Group of orthologs #349. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:205 P.jiroveci:205

Q4Q4Z3              	100.00%		L0PC62              	100.00%
Bootstrap support for Q4Q4Z3 as seed ortholog is 100%.
Bootstrap support for L0PC62 as seed ortholog is 100%.

Group of orthologs #350. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:31 P.jiroveci:205

Q4Q7G9              	100.00%		L0PD17              	100.00%
Bootstrap support for Q4Q7G9 as seed ortholog is 83%.
Bootstrap support for L0PD17 as seed ortholog is 100%.

Group of orthologs #351. Best score 205 bits
Score difference with first non-orthologous sequence - L.major:205 P.jiroveci:205

Q4QBV6              	100.00%		L0PED5              	100.00%
Bootstrap support for Q4QBV6 as seed ortholog is 100%.
Bootstrap support for L0PED5 as seed ortholog is 100%.

Group of orthologs #352. Best score 204 bits
Score difference with first non-orthologous sequence - L.major:204 P.jiroveci:204

E9AF12              	100.00%		L0P7H2              	100.00%
Q4Q6S3              	100.00%		
Bootstrap support for E9AF12 as seed ortholog is 100%.
Bootstrap support for Q4Q6S3 as seed ortholog is 100%.
Bootstrap support for L0P7H2 as seed ortholog is 100%.

Group of orthologs #353. Best score 204 bits
Score difference with first non-orthologous sequence - L.major:204 P.jiroveci:204

Q4QHS0              	100.00%		L0PBN3              	100.00%
Bootstrap support for Q4QHS0 as seed ortholog is 100%.
Bootstrap support for L0PBN3 as seed ortholog is 100%.

Group of orthologs #354. Best score 203 bits
Score difference with first non-orthologous sequence - L.major:203 P.jiroveci:203

Q4QH67              	100.00%		L0P8P0              	100.00%
Bootstrap support for Q4QH67 as seed ortholog is 100%.
Bootstrap support for L0P8P0 as seed ortholog is 100%.

Group of orthologs #355. Best score 202 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:125

E9ACA1              	100.00%		L0PGP6              	100.00%
Bootstrap support for E9ACA1 as seed ortholog is 99%.
Bootstrap support for L0PGP6 as seed ortholog is 100%.

Group of orthologs #356. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:29 P.jiroveci:201

Q4QEB1              	100.00%		L0PBU4              	100.00%
Q4Q5L5              	14.45%		
Bootstrap support for Q4QEB1 as seed ortholog is 90%.
Bootstrap support for L0PBU4 as seed ortholog is 100%.

Group of orthologs #357. Best score 201 bits
Score difference with first non-orthologous sequence - L.major:109 P.jiroveci:89

Q4QHT2              	100.00%		L0PFN2              	100.00%
Bootstrap support for Q4QHT2 as seed ortholog is 100%.
Bootstrap support for L0PFN2 as seed ortholog is 100%.

Group of orthologs #358. Best score 200 bits
Score difference with first non-orthologous sequence - L.major:200 P.jiroveci:200

E9ACY1              	100.00%		L0PCY0              	100.00%
Bootstrap support for E9ACY1 as seed ortholog is 100%.
Bootstrap support for L0PCY0 as seed ortholog is 100%.

Group of orthologs #359. Best score 199 bits
Score difference with first non-orthologous sequence - L.major:199 P.jiroveci:199

E9ACZ6              	100.00%		L0P9G1              	100.00%
Bootstrap support for E9ACZ6 as seed ortholog is 100%.
Bootstrap support for L0P9G1 as seed ortholog is 100%.

Group of orthologs #360. Best score 198 bits
Score difference with first non-orthologous sequence - L.major:198 P.jiroveci:198

E9AFH8              	100.00%		L0PCU0              	100.00%
Bootstrap support for E9AFH8 as seed ortholog is 100%.
Bootstrap support for L0PCU0 as seed ortholog is 100%.

Group of orthologs #361. Best score 198 bits
Score difference with first non-orthologous sequence - L.major:198 P.jiroveci:198

Q4QI30              	100.00%		L0P8J0              	100.00%
Bootstrap support for Q4QI30 as seed ortholog is 100%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #362. Best score 197 bits
Score difference with first non-orthologous sequence - L.major:197 P.jiroveci:197

Q4QHT0              	100.00%		L0P9G9              	100.00%
Bootstrap support for Q4QHT0 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #363. Best score 196 bits
Score difference with first non-orthologous sequence - L.major:82 P.jiroveci:196

Q4Q3J7              	100.00%		L0PEX1              	100.00%
Bootstrap support for Q4Q3J7 as seed ortholog is 99%.
Bootstrap support for L0PEX1 as seed ortholog is 100%.

Group of orthologs #364. Best score 196 bits
Score difference with first non-orthologous sequence - L.major:196 P.jiroveci:196

Q4QC89              	100.00%		L0PHL1              	100.00%
Bootstrap support for Q4QC89 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #365. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.jiroveci:195

E9AFB8              	100.00%		L0P8M3              	100.00%
Bootstrap support for E9AFB8 as seed ortholog is 100%.
Bootstrap support for L0P8M3 as seed ortholog is 100%.

Group of orthologs #366. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.jiroveci:195

Q4Q601              	100.00%		L0P702              	100.00%
Bootstrap support for Q4Q601 as seed ortholog is 100%.
Bootstrap support for L0P702 as seed ortholog is 100%.

Group of orthologs #367. Best score 195 bits
Score difference with first non-orthologous sequence - L.major:195 P.jiroveci:195

Q4QCP6              	100.00%		L0PBM5              	100.00%
Bootstrap support for Q4QCP6 as seed ortholog is 100%.
Bootstrap support for L0PBM5 as seed ortholog is 100%.

Group of orthologs #368. Best score 194 bits
Score difference with first non-orthologous sequence - L.major:194 P.jiroveci:194

Q4Q3M1              	100.00%		L0PBS5              	100.00%
Bootstrap support for Q4Q3M1 as seed ortholog is 100%.
Bootstrap support for L0PBS5 as seed ortholog is 100%.

Group of orthologs #369. Best score 194 bits
Score difference with first non-orthologous sequence - L.major:194 P.jiroveci:194

Q4Q561              	100.00%		L0PDG3              	100.00%
Bootstrap support for Q4Q561 as seed ortholog is 100%.
Bootstrap support for L0PDG3 as seed ortholog is 100%.

Group of orthologs #370. Best score 194 bits
Score difference with first non-orthologous sequence - L.major:194 P.jiroveci:194

Q4QAP8              	100.00%		L0PF73              	100.00%
Bootstrap support for Q4QAP8 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #371. Best score 193 bits
Score difference with first non-orthologous sequence - L.major:193 P.jiroveci:193

Q4Q198              	100.00%		L0P9S5              	100.00%
Q4QH45              	16.93%		
Bootstrap support for Q4Q198 as seed ortholog is 100%.
Bootstrap support for L0P9S5 as seed ortholog is 100%.

Group of orthologs #372. Best score 193 bits
Score difference with first non-orthologous sequence - L.major:119 P.jiroveci:193

Q4QAN4              	100.00%		L0PIN5              	100.00%
                    	       		L0PE52              	91.81%
Bootstrap support for Q4QAN4 as seed ortholog is 99%.
Bootstrap support for L0PIN5 as seed ortholog is 100%.

Group of orthologs #373. Best score 193 bits
Score difference with first non-orthologous sequence - L.major:193 P.jiroveci:193

Q4Q2V8              	100.00%		L0P9W3              	100.00%
Bootstrap support for Q4Q2V8 as seed ortholog is 100%.
Bootstrap support for L0P9W3 as seed ortholog is 100%.

Group of orthologs #374. Best score 193 bits
Score difference with first non-orthologous sequence - L.major:96 P.jiroveci:193

Q4Q8F1              	100.00%		L0PGL1              	100.00%
Bootstrap support for Q4Q8F1 as seed ortholog is 98%.
Bootstrap support for L0PGL1 as seed ortholog is 100%.

Group of orthologs #375. Best score 192 bits
Score difference with first non-orthologous sequence - L.major:72 P.jiroveci:23

Q4Q1M8              	100.00%		L0PIP5              	100.00%
Bootstrap support for Q4Q1M8 as seed ortholog is 80%.
Bootstrap support for L0PIP5 as seed ortholog is 64%.
Alternative seed ortholog is L0PA63 (23 bits away from this cluster)

Group of orthologs #376. Best score 192 bits
Score difference with first non-orthologous sequence - L.major:192 P.jiroveci:192

Q4QDT5              	100.00%		L0PAE9              	100.00%
Bootstrap support for Q4QDT5 as seed ortholog is 100%.
Bootstrap support for L0PAE9 as seed ortholog is 100%.

Group of orthologs #377. Best score 191 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:191

E9AFR9              	100.00%		L0PAW4              	100.00%
E9AFS0              	100.00%		
Bootstrap support for E9AFR9 as seed ortholog is 96%.
Bootstrap support for E9AFS0 as seed ortholog is 97%.
Bootstrap support for L0PAW4 as seed ortholog is 100%.

Group of orthologs #378. Best score 191 bits
Score difference with first non-orthologous sequence - L.major:27 P.jiroveci:191

Q4Q7L5              	100.00%		L0PG86              	100.00%
Bootstrap support for Q4Q7L5 as seed ortholog is 78%.
Bootstrap support for L0PG86 as seed ortholog is 100%.

Group of orthologs #379. Best score 190 bits
Score difference with first non-orthologous sequence - L.major:17 P.jiroveci:25

Q4QFH9              	100.00%		L0PDS3              	100.00%
Q4QBR9              	17.78%		
Q4QBS0              	9.28%		
Bootstrap support for Q4QFH9 as seed ortholog is 69%.
Alternative seed ortholog is Q4QG48 (17 bits away from this cluster)
Bootstrap support for L0PDS3 as seed ortholog is 78%.

Group of orthologs #380. Best score 190 bits
Score difference with first non-orthologous sequence - L.major:190 P.jiroveci:190

Q4Q3Z6              	100.00%		L0P9B8              	100.00%
Bootstrap support for Q4Q3Z6 as seed ortholog is 100%.
Bootstrap support for L0P9B8 as seed ortholog is 100%.

Group of orthologs #381. Best score 190 bits
Score difference with first non-orthologous sequence - L.major:190 P.jiroveci:190

Q4QF82              	100.00%		L0PAG1              	100.00%
Bootstrap support for Q4QF82 as seed ortholog is 100%.
Bootstrap support for L0PAG1 as seed ortholog is 100%.

Group of orthologs #382. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.jiroveci:188

Q4Q8K7              	100.00%		L0PGD7              	100.00%
                    	       		L0PGQ0              	68.83%
Bootstrap support for Q4Q8K7 as seed ortholog is 100%.
Bootstrap support for L0PGD7 as seed ortholog is 100%.

Group of orthologs #383. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.jiroveci:188

Q4Q791              	100.00%		L0PHK5              	100.00%
Bootstrap support for Q4Q791 as seed ortholog is 100%.
Bootstrap support for L0PHK5 as seed ortholog is 100%.

Group of orthologs #384. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.jiroveci:188

Q4QGW3              	100.00%		L0PB66              	100.00%
Bootstrap support for Q4QGW3 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #385. Best score 188 bits
Score difference with first non-orthologous sequence - L.major:188 P.jiroveci:188

Q4QJB3              	100.00%		L0PCG8              	100.00%
Bootstrap support for Q4QJB3 as seed ortholog is 100%.
Bootstrap support for L0PCG8 as seed ortholog is 100%.

Group of orthologs #386. Best score 187 bits
Score difference with first non-orthologous sequence - L.major:187 P.jiroveci:187

Q4Q1Y2              	100.00%		L0PE58              	100.00%
Q4Q1Y3              	100.00%		
Bootstrap support for Q4Q1Y2 as seed ortholog is 100%.
Bootstrap support for Q4Q1Y3 as seed ortholog is 100%.
Bootstrap support for L0PE58 as seed ortholog is 100%.

Group of orthologs #387. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:69 P.jiroveci:186

Q4QBH1              	100.00%		L0PDB8              	100.00%
Q4Q424              	21.50%		
O02614              	12.75%		
Q4Q6Q9              	8.50%		
Bootstrap support for Q4QBH1 as seed ortholog is 98%.
Bootstrap support for L0PDB8 as seed ortholog is 100%.

Group of orthologs #388. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:186 P.jiroveci:186

Q4Q0B8              	100.00%		L0PH55              	100.00%
Bootstrap support for Q4Q0B8 as seed ortholog is 100%.
Bootstrap support for L0PH55 as seed ortholog is 100%.

Group of orthologs #389. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:186 P.jiroveci:186

Q4Q3A3              	100.00%		L0PEN7              	100.00%
Bootstrap support for Q4Q3A3 as seed ortholog is 100%.
Bootstrap support for L0PEN7 as seed ortholog is 100%.

Group of orthologs #390. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:186 P.jiroveci:186

Q4Q5P8              	100.00%		L0PGI4              	100.00%
Bootstrap support for Q4Q5P8 as seed ortholog is 100%.
Bootstrap support for L0PGI4 as seed ortholog is 100%.

Group of orthologs #391. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:186 P.jiroveci:186

Q4QG60              	100.00%		L0PBI2              	100.00%
Bootstrap support for Q4QG60 as seed ortholog is 100%.
Bootstrap support for L0PBI2 as seed ortholog is 100%.

Group of orthologs #392. Best score 186 bits
Score difference with first non-orthologous sequence - L.major:125 P.jiroveci:186

Q4QHK9              	100.00%		L0PFK0              	100.00%
Bootstrap support for Q4QHK9 as seed ortholog is 99%.
Bootstrap support for L0PFK0 as seed ortholog is 100%.

Group of orthologs #393. Best score 185 bits
Score difference with first non-orthologous sequence - L.major:185 P.jiroveci:185

Q4Q7E9              	100.00%		L0P949              	100.00%
Bootstrap support for Q4Q7E9 as seed ortholog is 100%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #394. Best score 185 bits
Score difference with first non-orthologous sequence - L.major:185 P.jiroveci:185

Q4QBV0              	100.00%		L0PAE8              	100.00%
Bootstrap support for Q4QBV0 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #395. Best score 184 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:184

Q4Q3H7              	100.00%		L0PEW5              	100.00%
Bootstrap support for Q4Q3H7 as seed ortholog is 59%.
Alternative seed ortholog is Q4Q9E9 (71 bits away from this cluster)
Bootstrap support for L0PEW5 as seed ortholog is 100%.

Group of orthologs #396. Best score 184 bits
Score difference with first non-orthologous sequence - L.major:184 P.jiroveci:184

Q4QAI2              	100.00%		L0PHN0              	100.00%
Bootstrap support for Q4QAI2 as seed ortholog is 100%.
Bootstrap support for L0PHN0 as seed ortholog is 100%.

Group of orthologs #397. Best score 183 bits
Score difference with first non-orthologous sequence - L.major:131 P.jiroveci:183

Q4QGU1              	100.00%		L0P839              	100.00%
Bootstrap support for Q4QGU1 as seed ortholog is 99%.
Bootstrap support for L0P839 as seed ortholog is 100%.

Group of orthologs #398. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:181 P.jiroveci:181

E9ADE6              	100.00%		L0PDZ2              	100.00%
Bootstrap support for E9ADE6 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #399. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:59 P.jiroveci:181

Q4Q816              	100.00%		L0P9R7              	100.00%
Bootstrap support for Q4Q816 as seed ortholog is 98%.
Bootstrap support for L0P9R7 as seed ortholog is 100%.

Group of orthologs #400. Best score 181 bits
Score difference with first non-orthologous sequence - L.major:59 P.jiroveci:89

Q9N2P5              	100.00%		L0P8I7              	100.00%
Bootstrap support for Q9N2P5 as seed ortholog is 97%.
Bootstrap support for L0P8I7 as seed ortholog is 99%.

Group of orthologs #401. Best score 180 bits
Score difference with first non-orthologous sequence - L.major:180 P.jiroveci:180

Q4Q161              	100.00%		L0PGV8              	100.00%
Bootstrap support for Q4Q161 as seed ortholog is 100%.
Bootstrap support for L0PGV8 as seed ortholog is 100%.

Group of orthologs #402. Best score 180 bits
Score difference with first non-orthologous sequence - L.major:180 P.jiroveci:180

Q4QH08              	100.00%		L0PB28              	100.00%
Bootstrap support for Q4QH08 as seed ortholog is 100%.
Bootstrap support for L0PB28 as seed ortholog is 100%.

Group of orthologs #403. Best score 179 bits
Score difference with first non-orthologous sequence - L.major:179 P.jiroveci:179

Q4Q431              	100.00%		L0PBE8              	100.00%
E9AFJ2              	6.90%		
Bootstrap support for Q4Q431 as seed ortholog is 100%.
Bootstrap support for L0PBE8 as seed ortholog is 100%.

Group of orthologs #404. Best score 178 bits
Score difference with first non-orthologous sequence - L.major:104 P.jiroveci:178

Q4Q2N5              	100.00%		L0PC02              	100.00%
Bootstrap support for Q4Q2N5 as seed ortholog is 98%.
Bootstrap support for L0PC02 as seed ortholog is 100%.

Group of orthologs #405. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:109 P.jiroveci:98

Q4Q7R7              	100.00%		L0PGE3              	100.00%
                    	       		L0PEY7              	54.47%
Bootstrap support for Q4Q7R7 as seed ortholog is 99%.
Bootstrap support for L0PGE3 as seed ortholog is 99%.

Group of orthologs #406. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:176 P.jiroveci:176

E9AEZ2              	100.00%		L0PF71              	100.00%
Bootstrap support for E9AEZ2 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #407. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:60 P.jiroveci:176

Q4Q7K8              	100.00%		L0P992              	100.00%
Bootstrap support for Q4Q7K8 as seed ortholog is 90%.
Bootstrap support for L0P992 as seed ortholog is 100%.

Group of orthologs #408. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:102 P.jiroveci:176

Q4QDB4              	100.00%		L0PFE0              	100.00%
Bootstrap support for Q4QDB4 as seed ortholog is 99%.
Bootstrap support for L0PFE0 as seed ortholog is 100%.

Group of orthologs #409. Best score 176 bits
Score difference with first non-orthologous sequence - L.major:176 P.jiroveci:176

Q4QDZ1              	100.00%		L0PFN4              	100.00%
Bootstrap support for Q4QDZ1 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #410. Best score 175 bits
Score difference with first non-orthologous sequence - L.major:175 P.jiroveci:175

Q4QAZ0              	100.00%		L0P8Y0              	100.00%
Bootstrap support for Q4QAZ0 as seed ortholog is 100%.
Bootstrap support for L0P8Y0 as seed ortholog is 100%.

Group of orthologs #411. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:174 P.jiroveci:174

E9AFW0              	100.00%		L0PBV6              	100.00%
Bootstrap support for E9AFW0 as seed ortholog is 100%.
Bootstrap support for L0PBV6 as seed ortholog is 100%.

Group of orthologs #412. Best score 174 bits
Score difference with first non-orthologous sequence - L.major:51 P.jiroveci:174

Q4Q687              	100.00%		L0PFZ1              	100.00%
Bootstrap support for Q4Q687 as seed ortholog is 92%.
Bootstrap support for L0PFZ1 as seed ortholog is 100%.

Group of orthologs #413. Best score 173 bits
Score difference with first non-orthologous sequence - L.major:173 P.jiroveci:173

Q4QF61              	100.00%		L0PAM5              	100.00%
Bootstrap support for Q4QF61 as seed ortholog is 100%.
Bootstrap support for L0PAM5 as seed ortholog is 100%.

Group of orthologs #414. Best score 172 bits
Score difference with first non-orthologous sequence - L.major:172 P.jiroveci:172

Q4Q698              	100.00%		L0PA09              	100.00%
Q4Q699              	76.35%		
Bootstrap support for Q4Q698 as seed ortholog is 100%.
Bootstrap support for L0PA09 as seed ortholog is 100%.

Group of orthologs #415. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.jiroveci:171

E9ADB9              	100.00%		L0PHG7              	100.00%
Bootstrap support for E9ADB9 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 100%.

Group of orthologs #416. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.jiroveci:171

Q4Q0H2              	100.00%		L0PEX9              	100.00%
Bootstrap support for Q4Q0H2 as seed ortholog is 100%.
Bootstrap support for L0PEX9 as seed ortholog is 100%.

Group of orthologs #417. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.jiroveci:171

Q4QBL3              	100.00%		L0PHM9              	100.00%
Bootstrap support for Q4QBL3 as seed ortholog is 100%.
Bootstrap support for L0PHM9 as seed ortholog is 100%.

Group of orthologs #418. Best score 171 bits
Score difference with first non-orthologous sequence - L.major:171 P.jiroveci:171

Q4QEV5              	100.00%		L0PFP6              	100.00%
Bootstrap support for Q4QEV5 as seed ortholog is 100%.
Bootstrap support for L0PFP6 as seed ortholog is 100%.

Group of orthologs #419. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.jiroveci:170

E9ADB2              	100.00%		L0PCW8              	100.00%
Bootstrap support for E9ADB2 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #420. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.jiroveci:170

Q4Q901              	100.00%		L0PGD6              	100.00%
Bootstrap support for Q4Q901 as seed ortholog is 100%.
Bootstrap support for L0PGD6 as seed ortholog is 100%.

Group of orthologs #421. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.jiroveci:170

Q4QF34              	100.00%		L0PEC1              	100.00%
Bootstrap support for Q4QF34 as seed ortholog is 100%.
Bootstrap support for L0PEC1 as seed ortholog is 100%.

Group of orthologs #422. Best score 170 bits
Score difference with first non-orthologous sequence - L.major:170 P.jiroveci:170

Q4QIL9              	100.00%		L0PBT3              	100.00%
Bootstrap support for Q4QIL9 as seed ortholog is 100%.
Bootstrap support for L0PBT3 as seed ortholog is 100%.

Group of orthologs #423. Best score 169 bits
Score difference with first non-orthologous sequence - L.major:169 P.jiroveci:169

E9AD22              	100.00%		L0PCB3              	100.00%
Bootstrap support for E9AD22 as seed ortholog is 100%.
Bootstrap support for L0PCB3 as seed ortholog is 100%.

Group of orthologs #424. Best score 169 bits
Score difference with first non-orthologous sequence - L.major:12 P.jiroveci:40

E9AEJ0              	100.00%		L0PGT3              	100.00%
Bootstrap support for E9AEJ0 as seed ortholog is 69%.
Alternative seed ortholog is E9ADU4 (12 bits away from this cluster)
Bootstrap support for L0PGT3 as seed ortholog is 94%.

Group of orthologs #425. Best score 169 bits
Score difference with first non-orthologous sequence - L.major:169 P.jiroveci:169

Q4Q9H1              	100.00%		L0P8J2              	100.00%
Bootstrap support for Q4Q9H1 as seed ortholog is 100%.
Bootstrap support for L0P8J2 as seed ortholog is 100%.

Group of orthologs #426. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:168

Q4Q3T2              	100.00%		L0PB68              	100.00%
                    	       		L0PCQ8              	25.82%
Bootstrap support for Q4Q3T2 as seed ortholog is 100%.
Bootstrap support for L0PB68 as seed ortholog is 100%.

Group of orthologs #427. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:58 P.jiroveci:83

E9ACB4              	100.00%		L0P9F9              	100.00%
Bootstrap support for E9ACB4 as seed ortholog is 99%.
Bootstrap support for L0P9F9 as seed ortholog is 99%.

Group of orthologs #428. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:168

E9ACP3              	100.00%		L0PFI2              	100.00%
Bootstrap support for E9ACP3 as seed ortholog is 100%.
Bootstrap support for L0PFI2 as seed ortholog is 100%.

Group of orthologs #429. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:168

P25204              	100.00%		L0PC53              	100.00%
Bootstrap support for P25204 as seed ortholog is 100%.
Bootstrap support for L0PC53 as seed ortholog is 100%.

Group of orthologs #430. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:91

Q4Q9L8              	100.00%		L0PCG1              	100.00%
Bootstrap support for Q4Q9L8 as seed ortholog is 100%.
Bootstrap support for L0PCG1 as seed ortholog is 98%.

Group of orthologs #431. Best score 168 bits
Score difference with first non-orthologous sequence - L.major:168 P.jiroveci:168

Q4QAA9              	100.00%		L0PBZ6              	100.00%
Bootstrap support for Q4QAA9 as seed ortholog is 100%.
Bootstrap support for L0PBZ6 as seed ortholog is 100%.

Group of orthologs #432. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:43 P.jiroveci:13

Q4QIJ7              	100.00%		L0PCJ7              	100.00%
Q4QDX7              	49.66%		
Bootstrap support for Q4QIJ7 as seed ortholog is 90%.
Bootstrap support for L0PCJ7 as seed ortholog is 64%.
Alternative seed ortholog is L0PCN5 (13 bits away from this cluster)

Group of orthologs #433. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.jiroveci:167

Q4QEY9              	100.00%		L0P7Q3              	100.00%
Bootstrap support for Q4QEY9 as seed ortholog is 100%.
Bootstrap support for L0P7Q3 as seed ortholog is 100%.

Group of orthologs #434. Best score 167 bits
Score difference with first non-orthologous sequence - L.major:167 P.jiroveci:167

Q4QJ81              	100.00%		L0P9I3              	100.00%
Bootstrap support for Q4QJ81 as seed ortholog is 100%.
Bootstrap support for L0P9I3 as seed ortholog is 100%.

Group of orthologs #435. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:166 P.jiroveci:166

Q4Q4Q4              	100.00%		L0PBP9              	100.00%
Q4Q4Q6              	11.68%		
Q4Q4Q5              	11.51%		
Bootstrap support for Q4Q4Q4 as seed ortholog is 100%.
Bootstrap support for L0PBP9 as seed ortholog is 100%.

Group of orthologs #436. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:5 P.jiroveci:166

E9AEA0              	100.00%		L0P967              	100.00%
E9AEA1              	49.64%		
Bootstrap support for E9AEA0 as seed ortholog is 54%.
Alternative seed ortholog is E9ABZ2 (5 bits away from this cluster)
Bootstrap support for L0P967 as seed ortholog is 100%.

Group of orthologs #437. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:166 P.jiroveci:166

E9AEY0              	100.00%		L0PCL6              	100.00%
Bootstrap support for E9AEY0 as seed ortholog is 100%.
Bootstrap support for L0PCL6 as seed ortholog is 100%.

Group of orthologs #438. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:92 P.jiroveci:166

Q4Q764              	100.00%		L0PFY2              	100.00%
Bootstrap support for Q4Q764 as seed ortholog is 99%.
Bootstrap support for L0PFY2 as seed ortholog is 100%.

Group of orthologs #439. Best score 166 bits
Score difference with first non-orthologous sequence - L.major:97 P.jiroveci:65

Q9NED4              	100.00%		L0PAS2              	100.00%
Bootstrap support for Q9NED4 as seed ortholog is 99%.
Bootstrap support for L0PAS2 as seed ortholog is 99%.

Group of orthologs #440. Best score 165 bits
Score difference with first non-orthologous sequence - L.major:45 P.jiroveci:63

Q4Q573              	100.00%		L0P8M4              	100.00%
Q4QIN6              	13.28%		
Bootstrap support for Q4Q573 as seed ortholog is 94%.
Bootstrap support for L0P8M4 as seed ortholog is 99%.

Group of orthologs #441. Best score 165 bits
Score difference with first non-orthologous sequence - L.major:165 P.jiroveci:165

E9ACN6              	100.00%		L0PDC7              	100.00%
Bootstrap support for E9ACN6 as seed ortholog is 100%.
Bootstrap support for L0PDC7 as seed ortholog is 100%.

Group of orthologs #442. Best score 165 bits
Score difference with first non-orthologous sequence - L.major:96 P.jiroveci:165

E9ADA3              	100.00%		L0PE04              	100.00%
Bootstrap support for E9ADA3 as seed ortholog is 99%.
Bootstrap support for L0PE04 as seed ortholog is 100%.

Group of orthologs #443. Best score 164 bits
Score difference with first non-orthologous sequence - L.major:164 P.jiroveci:164

Q4QEP9              	100.00%		L0PF79              	100.00%
Bootstrap support for Q4QEP9 as seed ortholog is 100%.
Bootstrap support for L0PF79 as seed ortholog is 100%.

Group of orthologs #444. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:163 P.jiroveci:163

Q4Q9S3              	100.00%		L0P919              	100.00%
Bootstrap support for Q4Q9S3 as seed ortholog is 100%.
Bootstrap support for L0P919 as seed ortholog is 100%.

Group of orthologs #445. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:106 P.jiroveci:163

Q4QAR5              	100.00%		L0PEN4              	100.00%
Bootstrap support for Q4QAR5 as seed ortholog is 97%.
Bootstrap support for L0PEN4 as seed ortholog is 100%.

Group of orthologs #446. Best score 163 bits
Score difference with first non-orthologous sequence - L.major:163 P.jiroveci:163

Q4QC13              	100.00%		L0PGX9              	100.00%
Bootstrap support for Q4QC13 as seed ortholog is 100%.
Bootstrap support for L0PGX9 as seed ortholog is 100%.

Group of orthologs #447. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.jiroveci:162

Q4Q5P2              	100.00%		L0PGY0              	100.00%
Q4QAX6              	100.00%		
Bootstrap support for Q4Q5P2 as seed ortholog is 100%.
Bootstrap support for Q4QAX6 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #448. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.jiroveci:162

E9AFZ8              	100.00%		L0PF92              	100.00%
Bootstrap support for E9AFZ8 as seed ortholog is 100%.
Bootstrap support for L0PF92 as seed ortholog is 100%.

Group of orthologs #449. Best score 162 bits
Score difference with first non-orthologous sequence - L.major:162 P.jiroveci:162

Q4QDV2              	100.00%		L0PHK3              	100.00%
Bootstrap support for Q4QDV2 as seed ortholog is 100%.
Bootstrap support for L0PHK3 as seed ortholog is 100%.

Group of orthologs #450. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.jiroveci:161

E9AEI1              	100.00%		L0P9G0              	100.00%
Q4Q6Z7              	15.96%		
Bootstrap support for E9AEI1 as seed ortholog is 100%.
Bootstrap support for L0P9G0 as seed ortholog is 100%.

Group of orthologs #451. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.jiroveci:51

Q4Q1G0              	100.00%		L0PEG1              	100.00%
Bootstrap support for Q4Q1G0 as seed ortholog is 100%.
Bootstrap support for L0PEG1 as seed ortholog is 88%.

Group of orthologs #452. Best score 161 bits
Score difference with first non-orthologous sequence - L.major:161 P.jiroveci:161

Q4Q669              	100.00%		L0PCV1              	100.00%
Bootstrap support for Q4Q669 as seed ortholog is 100%.
Bootstrap support for L0PCV1 as seed ortholog is 100%.

Group of orthologs #453. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:89 P.jiroveci:98

Q4QHY3              	100.00%		L0PFE3              	100.00%
Q4QHY4              	100.00%		
Bootstrap support for Q4QHY3 as seed ortholog is 98%.
Bootstrap support for Q4QHY4 as seed ortholog is 98%.
Bootstrap support for L0PFE3 as seed ortholog is 98%.

Group of orthologs #454. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:27 P.jiroveci:160

E9AE03              	100.00%		L0PAP9              	100.00%
Bootstrap support for E9AE03 as seed ortholog is 92%.
Bootstrap support for L0PAP9 as seed ortholog is 100%.

Group of orthologs #455. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:160 P.jiroveci:107

Q4Q0Y6              	100.00%		L0P7V1              	100.00%
Bootstrap support for Q4Q0Y6 as seed ortholog is 100%.
Bootstrap support for L0P7V1 as seed ortholog is 99%.

Group of orthologs #456. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:160 P.jiroveci:160

Q4FX73              	100.00%		L0PFL8              	100.00%
Bootstrap support for Q4FX73 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #457. Best score 160 bits
Score difference with first non-orthologous sequence - L.major:51 P.jiroveci:23

Q4QHD6              	100.00%		L0PDA0              	100.00%
Bootstrap support for Q4QHD6 as seed ortholog is 90%.
Bootstrap support for L0PDA0 as seed ortholog is 74%.
Alternative seed ortholog is L0P7Z7 (23 bits away from this cluster)

Group of orthologs #458. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:97 P.jiroveci:159

Q25337              	100.00%		L0PFK9              	100.00%
Bootstrap support for Q25337 as seed ortholog is 99%.
Bootstrap support for L0PFK9 as seed ortholog is 100%.

Group of orthologs #459. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:87 P.jiroveci:159

Q4Q8Q9              	100.00%		L0PB84              	100.00%
Bootstrap support for Q4Q8Q9 as seed ortholog is 99%.
Bootstrap support for L0PB84 as seed ortholog is 100%.

Group of orthologs #460. Best score 159 bits
Score difference with first non-orthologous sequence - L.major:159 P.jiroveci:159

Q4QAE1              	100.00%		L0PBX2              	100.00%
Bootstrap support for Q4QAE1 as seed ortholog is 100%.
Bootstrap support for L0PBX2 as seed ortholog is 100%.

Group of orthologs #461. Best score 158 bits
Score difference with first non-orthologous sequence - L.major:158 P.jiroveci:158

Q4QJ37              	100.00%		L0PC18              	100.00%
Q4QJ39              	100.00%		
Bootstrap support for Q4QJ37 as seed ortholog is 100%.
Bootstrap support for Q4QJ39 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #462. Best score 158 bits
Score difference with first non-orthologous sequence - L.major:56 P.jiroveci:46

E9AD53              	100.00%		L0PIS9              	100.00%
Bootstrap support for E9AD53 as seed ortholog is 95%.
Bootstrap support for L0PIS9 as seed ortholog is 96%.

Group of orthologs #463. Best score 158 bits
Score difference with first non-orthologous sequence - L.major:158 P.jiroveci:158

Q4QDE8              	100.00%		L0P9L7              	100.00%
Bootstrap support for Q4QDE8 as seed ortholog is 100%.
Bootstrap support for L0P9L7 as seed ortholog is 100%.

Group of orthologs #464. Best score 157 bits
Score difference with first non-orthologous sequence - L.major:157 P.jiroveci:157

E9ADC7              	100.00%		L0P8N3              	100.00%
Bootstrap support for E9ADC7 as seed ortholog is 100%.
Bootstrap support for L0P8N3 as seed ortholog is 100%.

Group of orthologs #465. Best score 157 bits
Score difference with first non-orthologous sequence - L.major:157 P.jiroveci:95

Q4Q5P6              	100.00%		L0PDL9              	100.00%
Bootstrap support for Q4Q5P6 as seed ortholog is 100%.
Bootstrap support for L0PDL9 as seed ortholog is 99%.

Group of orthologs #466. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:156 P.jiroveci:156

Q4Q127              	100.00%		L0PAL2              	100.00%
Bootstrap support for Q4Q127 as seed ortholog is 100%.
Bootstrap support for L0PAL2 as seed ortholog is 100%.

Group of orthologs #467. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:156 P.jiroveci:156

Q4Q851              	100.00%		L0PBG0              	100.00%
Bootstrap support for Q4Q851 as seed ortholog is 100%.
Bootstrap support for L0PBG0 as seed ortholog is 100%.

Group of orthologs #468. Best score 156 bits
Score difference with first non-orthologous sequence - L.major:156 P.jiroveci:156

Q4Q7F0              	100.00%		L0PGK0              	100.00%
Bootstrap support for Q4Q7F0 as seed ortholog is 100%.
Bootstrap support for L0PGK0 as seed ortholog is 100%.

Group of orthologs #469. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.jiroveci:55

Q4Q7Y7              	100.00%		L0PFY7              	100.00%
Bootstrap support for Q4Q7Y7 as seed ortholog is 100%.
Bootstrap support for L0PFY7 as seed ortholog is 94%.

Group of orthologs #470. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.jiroveci:155

Q4QFP4              	100.00%		L0P9T5              	100.00%
Bootstrap support for Q4QFP4 as seed ortholog is 100%.
Bootstrap support for L0P9T5 as seed ortholog is 100%.

Group of orthologs #471. Best score 155 bits
Score difference with first non-orthologous sequence - L.major:155 P.jiroveci:155

Q4QIH4              	100.00%		L0P8K8              	100.00%
Bootstrap support for Q4QIH4 as seed ortholog is 100%.
Bootstrap support for L0P8K8 as seed ortholog is 100%.

Group of orthologs #472. Best score 154 bits
Score difference with first non-orthologous sequence - L.major:154 P.jiroveci:98

Q4Q0Q0              	100.00%		L0P9N5              	100.00%
Bootstrap support for Q4Q0Q0 as seed ortholog is 100%.
Bootstrap support for L0P9N5 as seed ortholog is 100%.

Group of orthologs #473. Best score 152 bits
Score difference with first non-orthologous sequence - L.major:152 P.jiroveci:152

E9ADC5              	100.00%		L0PA51              	100.00%
Bootstrap support for E9ADC5 as seed ortholog is 100%.
Bootstrap support for L0PA51 as seed ortholog is 100%.

Group of orthologs #474. Best score 151 bits
Score difference with first non-orthologous sequence - L.major:151 P.jiroveci:151

Q4QDM8              	100.00%		L0PCX5              	100.00%
Bootstrap support for Q4QDM8 as seed ortholog is 100%.
Bootstrap support for L0PCX5 as seed ortholog is 100%.

Group of orthologs #475. Best score 150 bits
Score difference with first non-orthologous sequence - L.major:150 P.jiroveci:150

E9ACU7              	100.00%		L0PCQ7              	100.00%
Bootstrap support for E9ACU7 as seed ortholog is 100%.
Bootstrap support for L0PCQ7 as seed ortholog is 100%.

Group of orthologs #476. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.jiroveci:149

Q4Q391              	100.00%		L0PA05              	100.00%
Bootstrap support for Q4Q391 as seed ortholog is 100%.
Bootstrap support for L0PA05 as seed ortholog is 100%.

Group of orthologs #477. Best score 149 bits
Score difference with first non-orthologous sequence - L.major:149 P.jiroveci:149

Q4Q845              	100.00%		L0PHJ7              	100.00%
Bootstrap support for Q4Q845 as seed ortholog is 100%.
Bootstrap support for L0PHJ7 as seed ortholog is 100%.

Group of orthologs #478. Best score 148 bits
Score difference with first non-orthologous sequence - L.major:148 P.jiroveci:97

E9AG00              	100.00%		L0PD40              	100.00%
Bootstrap support for E9AG00 as seed ortholog is 100%.
Bootstrap support for L0PD40 as seed ortholog is 99%.

Group of orthologs #479. Best score 148 bits
Score difference with first non-orthologous sequence - L.major:148 P.jiroveci:148

Q4QCN7              	100.00%		L0P9I0              	100.00%
Bootstrap support for Q4QCN7 as seed ortholog is 100%.
Bootstrap support for L0P9I0 as seed ortholog is 100%.

Group of orthologs #480. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.jiroveci:147

Q4Q4P1              	100.00%		L0PET8              	100.00%
Bootstrap support for Q4Q4P1 as seed ortholog is 100%.
Bootstrap support for L0PET8 as seed ortholog is 100%.

Group of orthologs #481. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:147 P.jiroveci:147

Q4QH62              	100.00%		L0PBJ0              	100.00%
Bootstrap support for Q4QH62 as seed ortholog is 100%.
Bootstrap support for L0PBJ0 as seed ortholog is 100%.

Group of orthologs #482. Best score 147 bits
Score difference with first non-orthologous sequence - L.major:40 P.jiroveci:54

Q4QHC3              	100.00%		L0PHW8              	100.00%
Bootstrap support for Q4QHC3 as seed ortholog is 97%.
Bootstrap support for L0PHW8 as seed ortholog is 99%.

Group of orthologs #483. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.jiroveci:146

Q4Q2S0              	100.00%		L0PAJ2              	100.00%
Bootstrap support for Q4Q2S0 as seed ortholog is 100%.
Bootstrap support for L0PAJ2 as seed ortholog is 100%.

Group of orthologs #484. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.jiroveci:146

E9AFI6              	100.00%		L0PDW5              	100.00%
Bootstrap support for E9AFI6 as seed ortholog is 100%.
Bootstrap support for L0PDW5 as seed ortholog is 100%.

Group of orthologs #485. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:146 P.jiroveci:146

Q4Q7H9              	100.00%		L0PA48              	100.00%
Bootstrap support for Q4Q7H9 as seed ortholog is 100%.
Bootstrap support for L0PA48 as seed ortholog is 100%.

Group of orthologs #486. Best score 146 bits
Score difference with first non-orthologous sequence - L.major:59 P.jiroveci:75

Q4Q2W1              	100.00%		L0PEX6              	100.00%
Bootstrap support for Q4Q2W1 as seed ortholog is 97%.
Bootstrap support for L0PEX6 as seed ortholog is 99%.

Group of orthologs #487. Best score 145 bits
Score difference with first non-orthologous sequence - L.major:145 P.jiroveci:145

Q4Q0I6              	100.00%		L0PEG2              	100.00%
Bootstrap support for Q4Q0I6 as seed ortholog is 100%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #488. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:5 P.jiroveci:144

Q4Q9E3              	100.00%		L0PB10              	100.00%
Bootstrap support for Q4Q9E3 as seed ortholog is 54%.
Alternative seed ortholog is Q4Q9V4 (5 bits away from this cluster)
Bootstrap support for L0PB10 as seed ortholog is 100%.

Group of orthologs #489. Best score 144 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:144

Q4Q459              	100.00%		L0PGG0              	100.00%
Bootstrap support for Q4Q459 as seed ortholog is 92%.
Bootstrap support for L0PGG0 as seed ortholog is 100%.

Group of orthologs #490. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.jiroveci:143

E9AE76              	100.00%		L0PA96              	100.00%
Bootstrap support for E9AE76 as seed ortholog is 100%.
Bootstrap support for L0PA96 as seed ortholog is 100%.

Group of orthologs #491. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.jiroveci:143

E9AFK3              	100.00%		L0PCA8              	100.00%
Bootstrap support for E9AFK3 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #492. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.jiroveci:59

Q4QCH5              	100.00%		L0PDR6              	100.00%
Bootstrap support for Q4QCH5 as seed ortholog is 100%.
Bootstrap support for L0PDR6 as seed ortholog is 96%.

Group of orthologs #493. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.jiroveci:143

Q4QE06              	100.00%		L0PH80              	100.00%
Bootstrap support for Q4QE06 as seed ortholog is 100%.
Bootstrap support for L0PH80 as seed ortholog is 100%.

Group of orthologs #494. Best score 143 bits
Score difference with first non-orthologous sequence - L.major:143 P.jiroveci:143

Q4QIS5              	100.00%		L0PD43              	100.00%
Bootstrap support for Q4QIS5 as seed ortholog is 100%.
Bootstrap support for L0PD43 as seed ortholog is 100%.

Group of orthologs #495. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.jiroveci:142

Q4Q5J1              	100.00%		L0P701              	100.00%
Bootstrap support for Q4Q5J1 as seed ortholog is 100%.
Bootstrap support for L0P701 as seed ortholog is 100%.

Group of orthologs #496. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.jiroveci:142

Q4QA21              	100.00%		L0PD65              	100.00%
Bootstrap support for Q4QA21 as seed ortholog is 100%.
Bootstrap support for L0PD65 as seed ortholog is 100%.

Group of orthologs #497. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:142 P.jiroveci:142

Q4Q824              	100.00%		L0PFH7              	100.00%
Bootstrap support for Q4Q824 as seed ortholog is 100%.
Bootstrap support for L0PFH7 as seed ortholog is 100%.

Group of orthologs #498. Best score 142 bits
Score difference with first non-orthologous sequence - L.major:56 P.jiroveci:142

Q4Q9B3              	100.00%		L0PF58              	100.00%
Bootstrap support for Q4Q9B3 as seed ortholog is 97%.
Bootstrap support for L0PF58 as seed ortholog is 100%.

Group of orthologs #499. Best score 141 bits
Score difference with first non-orthologous sequence - L.major:141 P.jiroveci:141

Q66NE0              	100.00%		L0P9F7              	100.00%
Q4Q434              	6.82%		L0PGP0              	85.43%
Bootstrap support for Q66NE0 as seed ortholog is 100%.
Bootstrap support for L0P9F7 as seed ortholog is 100%.

Group of orthologs #500. Best score 141 bits
Score difference with first non-orthologous sequence - L.major:141 P.jiroveci:141

E9AFK0              	100.00%		L0PB81              	100.00%
Bootstrap support for E9AFK0 as seed ortholog is 100%.
Bootstrap support for L0PB81 as seed ortholog is 100%.

Group of orthologs #501. Best score 140 bits
Score difference with first non-orthologous sequence - L.major:48 P.jiroveci:140

Q4Q369              	100.00%		L0P9M9              	100.00%
Bootstrap support for Q4Q369 as seed ortholog is 91%.
Bootstrap support for L0P9M9 as seed ortholog is 100%.

Group of orthologs #502. Best score 140 bits
Score difference with first non-orthologous sequence - L.major:56 P.jiroveci:47

Q4Q3Q8              	100.00%		L0P9D2              	100.00%
Bootstrap support for Q4Q3Q8 as seed ortholog is 99%.
Bootstrap support for L0P9D2 as seed ortholog is 97%.

Group of orthologs #503. Best score 140 bits
Score difference with first non-orthologous sequence - L.major:140 P.jiroveci:140

Q4QAY6              	100.00%		L0PD44              	100.00%
Bootstrap support for Q4QAY6 as seed ortholog is 100%.
Bootstrap support for L0PD44 as seed ortholog is 100%.

Group of orthologs #504. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.jiroveci:139

E9AEK1              	100.00%		L0PBI9              	100.00%
Bootstrap support for E9AEK1 as seed ortholog is 100%.
Bootstrap support for L0PBI9 as seed ortholog is 100%.

Group of orthologs #505. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.jiroveci:139

Q4Q9R2              	100.00%		L0PBX0              	100.00%
Bootstrap support for Q4Q9R2 as seed ortholog is 100%.
Bootstrap support for L0PBX0 as seed ortholog is 100%.

Group of orthologs #506. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.jiroveci:139

Q4QCD7              	100.00%		L0PBQ1              	100.00%
Bootstrap support for Q4QCD7 as seed ortholog is 100%.
Bootstrap support for L0PBQ1 as seed ortholog is 100%.

Group of orthologs #507. Best score 139 bits
Score difference with first non-orthologous sequence - L.major:139 P.jiroveci:139

Q4QF22              	100.00%		L0PDS0              	100.00%
Bootstrap support for Q4QF22 as seed ortholog is 100%.
Bootstrap support for L0PDS0 as seed ortholog is 100%.

Group of orthologs #508. Best score 138 bits
Score difference with first non-orthologous sequence - L.major:69 P.jiroveci:138

Q4Q3K8              	100.00%		L0PD97              	100.00%
Bootstrap support for Q4Q3K8 as seed ortholog is 98%.
Bootstrap support for L0PD97 as seed ortholog is 100%.

Group of orthologs #509. Best score 138 bits
Score difference with first non-orthologous sequence - L.major:138 P.jiroveci:138

Q4Q0Z6              	100.00%		L0PGQ4              	100.00%
Bootstrap support for Q4Q0Z6 as seed ortholog is 100%.
Bootstrap support for L0PGQ4 as seed ortholog is 100%.

Group of orthologs #510. Best score 138 bits
Score difference with first non-orthologous sequence - L.major:138 P.jiroveci:138

Q4Q7N6              	100.00%		L0PFU0              	100.00%
Bootstrap support for Q4Q7N6 as seed ortholog is 100%.
Bootstrap support for L0PFU0 as seed ortholog is 100%.

Group of orthologs #511. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:29 P.jiroveci:137

Q4QAA1              	100.00%		L0PCE9              	100.00%
                    	       		L0PBP3              	10.14%
                    	       		L0PBN5              	9.57%
Bootstrap support for Q4QAA1 as seed ortholog is 67%.
Alternative seed ortholog is Q4Q1B3 (29 bits away from this cluster)
Bootstrap support for L0PCE9 as seed ortholog is 100%.

Group of orthologs #512. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:137 P.jiroveci:137

Q4Q174              	100.00%		L0PDN5              	100.00%
Bootstrap support for Q4Q174 as seed ortholog is 100%.
Bootstrap support for L0PDN5 as seed ortholog is 100%.

Group of orthologs #513. Best score 137 bits
Score difference with first non-orthologous sequence - L.major:137 P.jiroveci:137

Q4QDZ7              	100.00%		L0PFH2              	100.00%
Bootstrap support for Q4QDZ7 as seed ortholog is 100%.
Bootstrap support for L0PFH2 as seed ortholog is 100%.

Group of orthologs #514. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.jiroveci:136

E9AEA9              	100.00%		L0PC96              	100.00%
E9AEA8              	98.37%		
Bootstrap support for E9AEA9 as seed ortholog is 100%.
Bootstrap support for L0PC96 as seed ortholog is 100%.

Group of orthologs #515. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.jiroveci:136

Q4Q0Q6              	100.00%		L0PC68              	100.00%
Bootstrap support for Q4Q0Q6 as seed ortholog is 100%.
Bootstrap support for L0PC68 as seed ortholog is 100%.

Group of orthologs #516. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.jiroveci:136

Q4Q833              	100.00%		L0P8R5              	100.00%
Bootstrap support for Q4Q833 as seed ortholog is 100%.
Bootstrap support for L0P8R5 as seed ortholog is 100%.

Group of orthologs #517. Best score 136 bits
Score difference with first non-orthologous sequence - L.major:136 P.jiroveci:136

Q4Q7P3              	100.00%		L0PCY5              	100.00%
Bootstrap support for Q4Q7P3 as seed ortholog is 100%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #518. Best score 135 bits
Score difference with first non-orthologous sequence - L.major:135 P.jiroveci:135

Q66NE2              	100.00%		L0PA86              	100.00%
Q4Q3C1              	56.47%		
Bootstrap support for Q66NE2 as seed ortholog is 100%.
Bootstrap support for L0PA86 as seed ortholog is 100%.

Group of orthologs #519. Best score 135 bits
Score difference with first non-orthologous sequence - L.major:135 P.jiroveci:135

Q4Q8G4              	100.00%		L0P9N4              	100.00%
Bootstrap support for Q4Q8G4 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #520. Best score 134 bits
Score difference with first non-orthologous sequence - L.major:134 P.jiroveci:134

Q4QFY3              	100.00%		L0PGE7              	100.00%
Bootstrap support for Q4QFY3 as seed ortholog is 100%.
Bootstrap support for L0PGE7 as seed ortholog is 100%.

Group of orthologs #521. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

E9AFR7              	100.00%		L0PDW9              	100.00%
Q4Q3Z7              	14.50%		
Bootstrap support for E9AFR7 as seed ortholog is 100%.
Bootstrap support for L0PDW9 as seed ortholog is 100%.

Group of orthologs #522. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

E9AEX6              	100.00%		L0P896              	100.00%
Bootstrap support for E9AEX6 as seed ortholog is 100%.
Bootstrap support for L0P896 as seed ortholog is 100%.

Group of orthologs #523. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

Q4Q0X5              	100.00%		L0PCT5              	100.00%
Bootstrap support for Q4Q0X5 as seed ortholog is 100%.
Bootstrap support for L0PCT5 as seed ortholog is 100%.

Group of orthologs #524. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

Q4Q3U7              	100.00%		L0PBB0              	100.00%
Bootstrap support for Q4Q3U7 as seed ortholog is 100%.
Bootstrap support for L0PBB0 as seed ortholog is 100%.

Group of orthologs #525. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

E9AFN7              	100.00%		L0PFG9              	100.00%
Bootstrap support for E9AFN7 as seed ortholog is 100%.
Bootstrap support for L0PFG9 as seed ortholog is 100%.

Group of orthologs #526. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

Q4Q4D4              	100.00%		L0PE53              	100.00%
Bootstrap support for Q4Q4D4 as seed ortholog is 100%.
Bootstrap support for L0PE53 as seed ortholog is 100%.

Group of orthologs #527. Best score 133 bits
Score difference with first non-orthologous sequence - L.major:133 P.jiroveci:133

Q4QEM6              	100.00%		L0PBN7              	100.00%
Bootstrap support for Q4QEM6 as seed ortholog is 100%.
Bootstrap support for L0PBN7 as seed ortholog is 100%.

Group of orthologs #528. Best score 132 bits
Score difference with first non-orthologous sequence - L.major:25 P.jiroveci:49

Q4Q5I6              	100.00%		L0PA17              	100.00%
                    	       		L0PHH9              	12.79%
Bootstrap support for Q4Q5I6 as seed ortholog is 81%.
Bootstrap support for L0PA17 as seed ortholog is 96%.

Group of orthologs #529. Best score 132 bits
Score difference with first non-orthologous sequence - L.major:4 P.jiroveci:20

Q4Q9P0              	100.00%		L0PGL7              	100.00%
Bootstrap support for Q4Q9P0 as seed ortholog is 47%.
Alternative seed ortholog is Q4QDK6 (4 bits away from this cluster)
Bootstrap support for L0PGL7 as seed ortholog is 69%.
Alternative seed ortholog is L0PB47 (20 bits away from this cluster)

Group of orthologs #530. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.jiroveci:131

Q4Q4U0              	100.00%		L0PBC8              	100.00%
Q4Q9U4              	7.85%		
Bootstrap support for Q4Q4U0 as seed ortholog is 100%.
Bootstrap support for L0PBC8 as seed ortholog is 100%.

Group of orthologs #531. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.jiroveci:131

E9AF35              	100.00%		L0PC80              	100.00%
Bootstrap support for E9AF35 as seed ortholog is 100%.
Bootstrap support for L0PC80 as seed ortholog is 100%.

Group of orthologs #532. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.jiroveci:131

Q4Q2X8              	100.00%		L0PDQ3              	100.00%
Bootstrap support for Q4Q2X8 as seed ortholog is 100%.
Bootstrap support for L0PDQ3 as seed ortholog is 100%.

Group of orthologs #533. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.jiroveci:131

Q4Q7Y6              	100.00%		L0PB23              	100.00%
Bootstrap support for Q4Q7Y6 as seed ortholog is 100%.
Bootstrap support for L0PB23 as seed ortholog is 100%.

Group of orthologs #534. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:56 P.jiroveci:131

Q4Q5Y6              	100.00%		L0PF75              	100.00%
Bootstrap support for Q4Q5Y6 as seed ortholog is 92%.
Bootstrap support for L0PF75 as seed ortholog is 100%.

Group of orthologs #535. Best score 131 bits
Score difference with first non-orthologous sequence - L.major:131 P.jiroveci:131

Q4QGY9              	100.00%		L0P9M3              	100.00%
Bootstrap support for Q4QGY9 as seed ortholog is 100%.
Bootstrap support for L0P9M3 as seed ortholog is 100%.

Group of orthologs #536. Best score 130 bits
Score difference with first non-orthologous sequence - L.major:130 P.jiroveci:130

Q4Q6S2              	100.00%		L0PAB8              	100.00%
Bootstrap support for Q4Q6S2 as seed ortholog is 100%.
Bootstrap support for L0PAB8 as seed ortholog is 100%.

Group of orthologs #537. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.jiroveci:129

Q4QCB6              	100.00%		L0PFE9              	100.00%
Bootstrap support for Q4QCB6 as seed ortholog is 100%.
Bootstrap support for L0PFE9 as seed ortholog is 100%.

Group of orthologs #538. Best score 129 bits
Score difference with first non-orthologous sequence - L.major:129 P.jiroveci:129

Q4QE21              	100.00%		L0PFS7              	100.00%
Bootstrap support for Q4QE21 as seed ortholog is 100%.
Bootstrap support for L0PFS7 as seed ortholog is 100%.

Group of orthologs #539. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.jiroveci:128

Q4Q3B9              	100.00%		L0P9Y2              	100.00%
Q4QFG2              	100.00%		
Bootstrap support for Q4Q3B9 as seed ortholog is 100%.
Bootstrap support for Q4QFG2 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #540. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.jiroveci:128

Q4Q5J4              	100.00%		L0PAC1              	100.00%
Bootstrap support for Q4Q5J4 as seed ortholog is 100%.
Bootstrap support for L0PAC1 as seed ortholog is 100%.

Group of orthologs #541. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.jiroveci:128

Q4Q859              	100.00%		L0PAT1              	100.00%
Bootstrap support for Q4Q859 as seed ortholog is 100%.
Bootstrap support for L0PAT1 as seed ortholog is 100%.

Group of orthologs #542. Best score 128 bits
Score difference with first non-orthologous sequence - L.major:128 P.jiroveci:128

Q4QB74              	100.00%		L0PAL5              	100.00%
Bootstrap support for Q4QB74 as seed ortholog is 100%.
Bootstrap support for L0PAL5 as seed ortholog is 100%.

Group of orthologs #543. Best score 127 bits
Score difference with first non-orthologous sequence - L.major:127 P.jiroveci:127

Q4Q9G0              	100.00%		L0PBH6              	100.00%
Bootstrap support for Q4Q9G0 as seed ortholog is 100%.
Bootstrap support for L0PBH6 as seed ortholog is 100%.

Group of orthologs #544. Best score 126 bits
Score difference with first non-orthologous sequence - L.major:126 P.jiroveci:126

Q4Q067              	100.00%		L0PCP5              	100.00%
Bootstrap support for Q4Q067 as seed ortholog is 100%.
Bootstrap support for L0PCP5 as seed ortholog is 100%.

Group of orthologs #545. Best score 125 bits
Score difference with first non-orthologous sequence - L.major:125 P.jiroveci:125

E9AFQ2              	100.00%		L0PA35              	100.00%
Bootstrap support for E9AFQ2 as seed ortholog is 100%.
Bootstrap support for L0PA35 as seed ortholog is 100%.

Group of orthologs #546. Best score 125 bits
Score difference with first non-orthologous sequence - L.major:125 P.jiroveci:125

Q4Q453              	100.00%		L0PG54              	100.00%
Bootstrap support for Q4Q453 as seed ortholog is 100%.
Bootstrap support for L0PG54 as seed ortholog is 100%.

Group of orthologs #547. Best score 125 bits
Score difference with first non-orthologous sequence - L.major:125 P.jiroveci:125

Q4QEL2              	100.00%		L0PAJ0              	100.00%
Bootstrap support for Q4QEL2 as seed ortholog is 100%.
Bootstrap support for L0PAJ0 as seed ortholog is 100%.

Group of orthologs #548. Best score 125 bits
Score difference with first non-orthologous sequence - L.major:125 P.jiroveci:125

Q4QG35              	100.00%		L0PFY1              	100.00%
Bootstrap support for Q4QG35 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #549. Best score 124 bits
Score difference with first non-orthologous sequence - L.major:38 P.jiroveci:17

Q4Q5W2              	100.00%		L0PFK8              	100.00%
Q4Q5T9              	31.33%		L0PCW4              	20.95%
Q4Q3Y9              	22.12%		
Q4Q1S4              	16.37%		
Q4QBQ2              	14.45%		
Q4Q1S3              	12.79%		
Q4Q1J2              	12.40%		
E9AEB9              	12.02%		
Q4QFJ2              	9.46%		
Q4Q598              	5.24%		
Bootstrap support for Q4Q5W2 as seed ortholog is 80%.
Bootstrap support for L0PFK8 as seed ortholog is 69%.
Alternative seed ortholog is L0PCN5 (17 bits away from this cluster)

Group of orthologs #550. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.jiroveci:123

E9ACF6              	100.00%		L0P8B2              	100.00%
Bootstrap support for E9ACF6 as seed ortholog is 100%.
Bootstrap support for L0P8B2 as seed ortholog is 100%.

Group of orthologs #551. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.jiroveci:123

Q4Q0I3              	100.00%		L0P872              	100.00%
Bootstrap support for Q4Q0I3 as seed ortholog is 100%.
Bootstrap support for L0P872 as seed ortholog is 100%.

Group of orthologs #552. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.jiroveci:123

Q4Q256              	100.00%		L0PD68              	100.00%
Bootstrap support for Q4Q256 as seed ortholog is 100%.
Bootstrap support for L0PD68 as seed ortholog is 100%.

Group of orthologs #553. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.jiroveci:123

Q4Q7B2              	100.00%		L0PF46              	100.00%
Bootstrap support for Q4Q7B2 as seed ortholog is 100%.
Bootstrap support for L0PF46 as seed ortholog is 100%.

Group of orthologs #554. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.jiroveci:123

Q4QHB9              	100.00%		L0PG39              	100.00%
Bootstrap support for Q4QHB9 as seed ortholog is 100%.
Bootstrap support for L0PG39 as seed ortholog is 100%.

Group of orthologs #555. Best score 123 bits
Score difference with first non-orthologous sequence - L.major:123 P.jiroveci:123

Q4QIC4              	100.00%		L0PFY9              	100.00%
Bootstrap support for Q4QIC4 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #556. Best score 122 bits
Score difference with first non-orthologous sequence - L.major:122 P.jiroveci:122

Q4Q0U9              	100.00%		L0PG84              	100.00%
Bootstrap support for Q4Q0U9 as seed ortholog is 100%.
Bootstrap support for L0PG84 as seed ortholog is 100%.

Group of orthologs #557. Best score 122 bits
Score difference with first non-orthologous sequence - L.major:122 P.jiroveci:122

Q4Q9V2              	100.00%		L0P9S7              	100.00%
Bootstrap support for Q4Q9V2 as seed ortholog is 100%.
Bootstrap support for L0P9S7 as seed ortholog is 100%.

Group of orthologs #558. Best score 122 bits
Score difference with first non-orthologous sequence - L.major:122 P.jiroveci:122

Q4Q5L0              	100.00%		L0PF74              	100.00%
Bootstrap support for Q4Q5L0 as seed ortholog is 100%.
Bootstrap support for L0PF74 as seed ortholog is 100%.

Group of orthologs #559. Best score 122 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:122

Q4QA94              	100.00%		L0PDP9              	100.00%
Bootstrap support for Q4QA94 as seed ortholog is 94%.
Bootstrap support for L0PDP9 as seed ortholog is 100%.

Group of orthologs #560. Best score 122 bits
Score difference with first non-orthologous sequence - L.major:38 P.jiroveci:122

Q4QFK1              	100.00%		L0PGL3              	100.00%
Bootstrap support for Q4QFK1 as seed ortholog is 77%.
Bootstrap support for L0PGL3 as seed ortholog is 100%.

Group of orthologs #561. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.jiroveci:121

Q4Q3S5              	100.00%		L0P863              	100.00%
Bootstrap support for Q4Q3S5 as seed ortholog is 100%.
Bootstrap support for L0P863 as seed ortholog is 100%.

Group of orthologs #562. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.jiroveci:121

Q4Q1H1              	100.00%		L0PBC7              	100.00%
Bootstrap support for Q4Q1H1 as seed ortholog is 100%.
Bootstrap support for L0PBC7 as seed ortholog is 100%.

Group of orthologs #563. Best score 121 bits
Score difference with first non-orthologous sequence - L.major:121 P.jiroveci:121

Q4QGW1              	100.00%		L0PE85              	100.00%
Bootstrap support for Q4QGW1 as seed ortholog is 100%.
Bootstrap support for L0PE85 as seed ortholog is 100%.

Group of orthologs #564. Best score 120 bits
Score difference with first non-orthologous sequence - L.major:64 P.jiroveci:48

Q4QF00              	100.00%		L0PC81              	100.00%
Q4QA75              	14.26%		
Q4QEZ9              	5.54%		
Bootstrap support for Q4QF00 as seed ortholog is 95%.
Bootstrap support for L0PC81 as seed ortholog is 91%.

Group of orthologs #565. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.jiroveci:118

Q4QC03              	100.00%		L0PEI9              	100.00%
Q4Q8F0              	50.21%		
Q4QBG2              	30.04%		
Bootstrap support for Q4QC03 as seed ortholog is 100%.
Bootstrap support for L0PEI9 as seed ortholog is 100%.

Group of orthologs #566. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.jiroveci:118

Q4QCN8              	100.00%		L0PF42              	100.00%
                    	       		L0PD01              	98.58%
Bootstrap support for Q4QCN8 as seed ortholog is 100%.
Bootstrap support for L0PF42 as seed ortholog is 100%.

Group of orthologs #567. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:25 P.jiroveci:118

Q4Q1R0              	100.00%		L0PDI3              	100.00%
Bootstrap support for Q4Q1R0 as seed ortholog is 75%.
Bootstrap support for L0PDI3 as seed ortholog is 100%.

Group of orthologs #568. Best score 118 bits
Score difference with first non-orthologous sequence - L.major:118 P.jiroveci:118

Q4QE62              	100.00%		L0P9U3              	100.00%
Bootstrap support for Q4QE62 as seed ortholog is 100%.
Bootstrap support for L0P9U3 as seed ortholog is 100%.

Group of orthologs #569. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:20 P.jiroveci:116

Q4Q682              	100.00%		L0P9S9              	100.00%
Q4Q683              	90.60%		L0PDT3              	44.69%
Q4Q680              	90.22%		
Q4Q6K6              	21.94%		
Q4QBX3              	20.51%		
Q4Q6M8              	20.04%		
Q4Q6H5              	20.04%		
Q4Q6K5              	19.18%		
E9AD45              	18.99%		
Q4Q6M9              	18.80%		
Q4Q6N0              	18.80%		
E9AD44              	18.80%		
Q4Q6N1              	18.14%		
Q4QIH0              	18.14%		
E9ADD7              	17.95%		
Q4Q509              	17.57%		
Bootstrap support for Q4Q682 as seed ortholog is 55%.
Alternative seed ortholog is Q4Q236 (20 bits away from this cluster)
Bootstrap support for L0P9S9 as seed ortholog is 100%.

Group of orthologs #570. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:65 P.jiroveci:116

Q4Q3B6              	100.00%		L0PAZ1              	100.00%
Bootstrap support for Q4Q3B6 as seed ortholog is 99%.
Bootstrap support for L0PAZ1 as seed ortholog is 100%.

Group of orthologs #571. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.jiroveci:116

Q4Q6T2              	100.00%		L0PA78              	100.00%
Bootstrap support for Q4Q6T2 as seed ortholog is 100%.
Bootstrap support for L0PA78 as seed ortholog is 100%.

Group of orthologs #572. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:5 P.jiroveci:24

Q4QEG6              	100.00%		L0PAY4              	100.00%
Bootstrap support for Q4QEG6 as seed ortholog is 54%.
Alternative seed ortholog is E9AE33 (5 bits away from this cluster)
Bootstrap support for L0PAY4 as seed ortholog is 97%.

Group of orthologs #573. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:23 P.jiroveci:116

Q4QAH7              	100.00%		L0PF33              	100.00%
Bootstrap support for Q4QAH7 as seed ortholog is 85%.
Bootstrap support for L0PF33 as seed ortholog is 100%.

Group of orthologs #574. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:39 P.jiroveci:116

Q9U1D3              	100.00%		L0P7E9              	100.00%
Bootstrap support for Q9U1D3 as seed ortholog is 94%.
Bootstrap support for L0P7E9 as seed ortholog is 100%.

Group of orthologs #575. Best score 116 bits
Score difference with first non-orthologous sequence - L.major:116 P.jiroveci:116

Q4QCZ8              	100.00%		L0PFL0              	100.00%
Bootstrap support for Q4QCZ8 as seed ortholog is 100%.
Bootstrap support for L0PFL0 as seed ortholog is 100%.

Group of orthologs #576. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:115 P.jiroveci:115

Q4Q270              	100.00%		L0PD37              	100.00%
Bootstrap support for Q4Q270 as seed ortholog is 100%.
Bootstrap support for L0PD37 as seed ortholog is 100%.

Group of orthologs #577. Best score 115 bits
Score difference with first non-orthologous sequence - L.major:26 P.jiroveci:15

Q4QH61              	100.00%		L0PBE3              	100.00%
Bootstrap support for Q4QH61 as seed ortholog is 75%.
Bootstrap support for L0PBE3 as seed ortholog is 69%.
Alternative seed ortholog is L0PC98 (15 bits away from this cluster)

Group of orthologs #578. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.jiroveci:114

Q4QB75              	100.00%		L0PGV5              	100.00%
Q4QB76              	62.93%		
E9ACV4              	42.77%		
Bootstrap support for Q4QB75 as seed ortholog is 100%.
Bootstrap support for L0PGV5 as seed ortholog is 100%.

Group of orthologs #579. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.jiroveci:114

E9AFM7              	100.00%		L0P7L2              	100.00%
                    	       		L0PFZ6              	98.49%
Bootstrap support for E9AFM7 as seed ortholog is 100%.
Bootstrap support for L0P7L2 as seed ortholog is 100%.

Group of orthologs #580. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.jiroveci:114

Q4QEE5              	100.00%		L0P7P7              	100.00%
Q9NLC0              	5.97%		
Bootstrap support for Q4QEE5 as seed ortholog is 100%.
Bootstrap support for L0P7P7 as seed ortholog is 100%.

Group of orthologs #581. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:70 P.jiroveci:114

E9AD99              	100.00%		L0PC61              	100.00%
Bootstrap support for E9AD99 as seed ortholog is 95%.
Bootstrap support for L0PC61 as seed ortholog is 100%.

Group of orthologs #582. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.jiroveci:114

Q4Q720              	100.00%		L0PEB8              	100.00%
Bootstrap support for Q4Q720 as seed ortholog is 100%.
Bootstrap support for L0PEB8 as seed ortholog is 100%.

Group of orthologs #583. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.jiroveci:114

Q4Q9A5              	100.00%		L0PGZ5              	100.00%
Bootstrap support for Q4Q9A5 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #584. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:47 P.jiroveci:114

Q4QEM7              	100.00%		L0PBT0              	100.00%
Bootstrap support for Q4QEM7 as seed ortholog is 96%.
Bootstrap support for L0PBT0 as seed ortholog is 100%.

Group of orthologs #585. Best score 114 bits
Score difference with first non-orthologous sequence - L.major:114 P.jiroveci:114

Q4QII6              	100.00%		L0PFZ8              	100.00%
Bootstrap support for Q4QII6 as seed ortholog is 100%.
Bootstrap support for L0PFZ8 as seed ortholog is 100%.

Group of orthologs #586. Best score 113 bits
Score difference with first non-orthologous sequence - L.major:113 P.jiroveci:113

Q4Q231              	100.00%		L0PDR1              	100.00%
Bootstrap support for Q4Q231 as seed ortholog is 100%.
Bootstrap support for L0PDR1 as seed ortholog is 100%.

Group of orthologs #587. Best score 113 bits
Score difference with first non-orthologous sequence - L.major:113 P.jiroveci:113

Q4QBH3              	100.00%		L0PBH8              	100.00%
Bootstrap support for Q4QBH3 as seed ortholog is 100%.
Bootstrap support for L0PBH8 as seed ortholog is 100%.

Group of orthologs #588. Best score 112 bits
Score difference with first non-orthologous sequence - L.major:112 P.jiroveci:112

E9AEE8              	100.00%		L0P8H6              	100.00%
Q4Q2R6              	100.00%		
Bootstrap support for E9AEE8 as seed ortholog is 100%.
Bootstrap support for Q4Q2R6 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #589. Best score 112 bits
Score difference with first non-orthologous sequence - L.major:112 P.jiroveci:112

Q4Q622              	100.00%		L0PCY2              	100.00%
Bootstrap support for Q4Q622 as seed ortholog is 100%.
Bootstrap support for L0PCY2 as seed ortholog is 100%.

Group of orthologs #590. Best score 112 bits
Score difference with first non-orthologous sequence - L.major:112 P.jiroveci:112

Q4QAF7              	100.00%		L0P9E5              	100.00%
Bootstrap support for Q4QAF7 as seed ortholog is 100%.
Bootstrap support for L0P9E5 as seed ortholog is 100%.

Group of orthologs #591. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.jiroveci:111

Q4Q627              	100.00%		L0PBL5              	100.00%
Bootstrap support for Q4Q627 as seed ortholog is 100%.
Bootstrap support for L0PBL5 as seed ortholog is 100%.

Group of orthologs #592. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.jiroveci:111

Q4Q820              	100.00%		L0PBD5              	100.00%
Bootstrap support for Q4Q820 as seed ortholog is 100%.
Bootstrap support for L0PBD5 as seed ortholog is 100%.

Group of orthologs #593. Best score 111 bits
Score difference with first non-orthologous sequence - L.major:111 P.jiroveci:111

Q4QEV0              	100.00%		L0P8R8              	100.00%
Bootstrap support for Q4QEV0 as seed ortholog is 100%.
Bootstrap support for L0P8R8 as seed ortholog is 100%.

Group of orthologs #594. Best score 110 bits
Score difference with first non-orthologous sequence - L.major:110 P.jiroveci:110

Q4Q504              	100.00%		L0PDH1              	100.00%
Bootstrap support for Q4Q504 as seed ortholog is 100%.
Bootstrap support for L0PDH1 as seed ortholog is 100%.

Group of orthologs #595. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.jiroveci:108

Q4Q1J5              	100.00%		L0PAN5              	100.00%
Bootstrap support for Q4Q1J5 as seed ortholog is 100%.
Bootstrap support for L0PAN5 as seed ortholog is 100%.

Group of orthologs #596. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.jiroveci:108

E9ACF5              	100.00%		L0PGQ8              	100.00%
Bootstrap support for E9ACF5 as seed ortholog is 100%.
Bootstrap support for L0PGQ8 as seed ortholog is 100%.

Group of orthologs #597. Best score 108 bits
Score difference with first non-orthologous sequence - L.major:108 P.jiroveci:108

Q4Q5G2              	100.00%		L0P9F5              	100.00%
Bootstrap support for Q4Q5G2 as seed ortholog is 100%.
Bootstrap support for L0P9F5 as seed ortholog is 100%.

Group of orthologs #598. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:107 P.jiroveci:107

E9AFG4              	100.00%		L0PHT7              	100.00%
Q4QHS2              	10.08%		
Q4Q5N2              	8.79%		
Bootstrap support for E9AFG4 as seed ortholog is 100%.
Bootstrap support for L0PHT7 as seed ortholog is 100%.

Group of orthologs #599. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:13 P.jiroveci:46

Q4Q5H1              	100.00%		L0PFZ5              	100.00%
Q4Q5H0              	24.03%		
Bootstrap support for Q4Q5H1 as seed ortholog is 35%.
Alternative seed ortholog is Q4QFH2 (13 bits away from this cluster)
Bootstrap support for L0PFZ5 as seed ortholog is 87%.

Group of orthologs #600. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:11 P.jiroveci:107

Q4QCN3              	100.00%		L0PDL5              	100.00%
Bootstrap support for Q4QCN3 as seed ortholog is 66%.
Alternative seed ortholog is Q4Q4Y5 (11 bits away from this cluster)
Bootstrap support for L0PDL5 as seed ortholog is 100%.

Group of orthologs #601. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:107 P.jiroveci:107

Q4QAC5              	100.00%		L0PG87              	100.00%
Bootstrap support for Q4QAC5 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #602. Best score 107 bits
Score difference with first non-orthologous sequence - L.major:107 P.jiroveci:107

Q8ISS8              	100.00%		L0PCU6              	100.00%
Bootstrap support for Q8ISS8 as seed ortholog is 100%.
Bootstrap support for L0PCU6 as seed ortholog is 100%.

Group of orthologs #603. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.jiroveci:106

Q4Q9C8              	100.00%		L0P8Q9              	100.00%
Q4Q059              	8.76%		
Bootstrap support for Q4Q9C8 as seed ortholog is 100%.
Bootstrap support for L0P8Q9 as seed ortholog is 100%.

Group of orthologs #604. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:44 P.jiroveci:106

Q4QCL6              	100.00%		L0PF38              	100.00%
Bootstrap support for Q4QCL6 as seed ortholog is 94%.
Bootstrap support for L0PF38 as seed ortholog is 100%.

Group of orthologs #605. Best score 106 bits
Score difference with first non-orthologous sequence - L.major:106 P.jiroveci:106

Q4QJH5              	100.00%		L0PE76              	100.00%
Bootstrap support for Q4QJH5 as seed ortholog is 100%.
Bootstrap support for L0PE76 as seed ortholog is 100%.

Group of orthologs #606. Best score 105 bits
Score difference with first non-orthologous sequence - L.major:105 P.jiroveci:105

Q4Q1Q3              	100.00%		L0P7U6              	100.00%
Bootstrap support for Q4Q1Q3 as seed ortholog is 100%.
Bootstrap support for L0P7U6 as seed ortholog is 100%.

Group of orthologs #607. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.jiroveci:104

Q4Q176              	100.00%		L0P6P2              	100.00%
Bootstrap support for Q4Q176 as seed ortholog is 100%.
Bootstrap support for L0P6P2 as seed ortholog is 100%.

Group of orthologs #608. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.jiroveci:104

Q4Q9G2              	100.00%		L0PDX6              	100.00%
Bootstrap support for Q4Q9G2 as seed ortholog is 100%.
Bootstrap support for L0PDX6 as seed ortholog is 100%.

Group of orthologs #609. Best score 104 bits
Score difference with first non-orthologous sequence - L.major:104 P.jiroveci:104

Q4QFZ2              	100.00%		L0PAZ5              	100.00%
Bootstrap support for Q4QFZ2 as seed ortholog is 100%.
Bootstrap support for L0PAZ5 as seed ortholog is 100%.

Group of orthologs #610. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.jiroveci:102

Q4Q242              	100.00%		L0PA27              	100.00%
Bootstrap support for Q4Q242 as seed ortholog is 100%.
Bootstrap support for L0PA27 as seed ortholog is 100%.

Group of orthologs #611. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:39 P.jiroveci:41

E9AFI5              	100.00%		L0PFQ4              	100.00%
Bootstrap support for E9AFI5 as seed ortholog is 89%.
Bootstrap support for L0PFQ4 as seed ortholog is 86%.

Group of orthologs #612. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.jiroveci:102

Q4Q1D2              	100.00%		L0PEG0              	100.00%
Bootstrap support for Q4Q1D2 as seed ortholog is 100%.
Bootstrap support for L0PEG0 as seed ortholog is 100%.

Group of orthologs #613. Best score 102 bits
Score difference with first non-orthologous sequence - L.major:102 P.jiroveci:102

Q4QB10              	100.00%		L0PD02              	100.00%
Bootstrap support for Q4QB10 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 100%.

Group of orthologs #614. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.jiroveci:101

E9AFV2              	100.00%		L0PAZ7              	100.00%
                    	       		L0PAH9              	84.04%
Bootstrap support for E9AFV2 as seed ortholog is 100%.
Bootstrap support for L0PAZ7 as seed ortholog is 100%.

Group of orthologs #615. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.jiroveci:101

E9AEN3              	100.00%		L0P997              	100.00%
Bootstrap support for E9AEN3 as seed ortholog is 100%.
Bootstrap support for L0P997 as seed ortholog is 100%.

Group of orthologs #616. Best score 101 bits
Score difference with first non-orthologous sequence - L.major:101 P.jiroveci:101

Q4Q7Q2              	100.00%		L0PC70              	100.00%
Bootstrap support for Q4Q7Q2 as seed ortholog is 100%.
Bootstrap support for L0PC70 as seed ortholog is 100%.

Group of orthologs #617. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.jiroveci:100

Q4Q3B5              	100.00%		L0PBH0              	100.00%
                    	       		L0PGS5              	48.27%
Bootstrap support for Q4Q3B5 as seed ortholog is 100%.
Bootstrap support for L0PBH0 as seed ortholog is 100%.

Group of orthologs #618. Best score 100 bits
Score difference with first non-orthologous sequence - L.major:100 P.jiroveci:100

Q4QAI0              	100.00%		L0P9X0              	100.00%
Bootstrap support for Q4QAI0 as seed ortholog is 100%.
Bootstrap support for L0P9X0 as seed ortholog is 100%.

Group of orthologs #619. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4Q873              	100.00%		L0PAE6              	100.00%
Q4Q5V1              	23.45%		
Q4Q5V0              	23.32%		
Q4Q3L6              	13.75%		
Bootstrap support for Q4Q873 as seed ortholog is 100%.
Bootstrap support for L0PAE6 as seed ortholog is 100%.

Group of orthologs #620. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4Q1H9              	100.00%		L0P7X9              	100.00%
                    	       		L0PBE2              	100.00%
Bootstrap support for Q4Q1H9 as seed ortholog is 100%.
Bootstrap support for L0P7X9 as seed ortholog is 100%.
Bootstrap support for L0PBE2 as seed ortholog is 100%.

Group of orthologs #621. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4Q0F8              	100.00%		L0P8D5              	100.00%
Bootstrap support for Q4Q0F8 as seed ortholog is 100%.
Bootstrap support for L0P8D5 as seed ortholog is 100%.

Group of orthologs #622. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:57

Q4Q1B7              	100.00%		L0P9T6              	100.00%
Bootstrap support for Q4Q1B7 as seed ortholog is 100%.
Bootstrap support for L0P9T6 as seed ortholog is 98%.

Group of orthologs #623. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4Q2L6              	100.00%		L0PDJ2              	100.00%
Bootstrap support for Q4Q2L6 as seed ortholog is 100%.
Bootstrap support for L0PDJ2 as seed ortholog is 100%.

Group of orthologs #624. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4QA79              	100.00%		L0PBP4              	100.00%
Bootstrap support for Q4QA79 as seed ortholog is 100%.
Bootstrap support for L0PBP4 as seed ortholog is 100%.

Group of orthologs #625. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4QGS1              	100.00%		L0P838              	100.00%
Bootstrap support for Q4QGS1 as seed ortholog is 100%.
Bootstrap support for L0P838 as seed ortholog is 100%.

Group of orthologs #626. Best score 99 bits
Score difference with first non-orthologous sequence - L.major:99 P.jiroveci:99

Q4QJ20              	100.00%		L0PE13              	100.00%
Bootstrap support for Q4QJ20 as seed ortholog is 100%.
Bootstrap support for L0PE13 as seed ortholog is 100%.

Group of orthologs #627. Best score 98 bits
Score difference with first non-orthologous sequence - L.major:98 P.jiroveci:98

O97212              	100.00%		L0PAA1              	100.00%
Q9U111              	100.00%		
Bootstrap support for O97212 as seed ortholog is 100%.
Bootstrap support for Q9U111 as seed ortholog is 100%.
Bootstrap support for L0PAA1 as seed ortholog is 100%.

Group of orthologs #628. Best score 98 bits
Score difference with first non-orthologous sequence - L.major:98 P.jiroveci:98

E9AC22              	100.00%		L0PHK8              	100.00%
                    	       		L0P8I1              	9.53%
Bootstrap support for E9AC22 as seed ortholog is 100%.
Bootstrap support for L0PHK8 as seed ortholog is 100%.

Group of orthologs #629. Best score 98 bits
Score difference with first non-orthologous sequence - L.major:98 P.jiroveci:39

E9AF78              	100.00%		L0P948              	100.00%
Bootstrap support for E9AF78 as seed ortholog is 100%.
Bootstrap support for L0P948 as seed ortholog is 89%.

Group of orthologs #630. Best score 98 bits
Score difference with first non-orthologous sequence - L.major:98 P.jiroveci:98

Q4Q2Y3              	100.00%		L0PA36              	100.00%
Bootstrap support for Q4Q2Y3 as seed ortholog is 100%.
Bootstrap support for L0PA36 as seed ortholog is 100%.

Group of orthologs #631. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.jiroveci:97

Q4Q0A8              	100.00%		L0P9K2              	100.00%
Bootstrap support for Q4Q0A8 as seed ortholog is 100%.
Bootstrap support for L0P9K2 as seed ortholog is 100%.

Group of orthologs #632. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.jiroveci:97

Q4Q1A9              	100.00%		L0PCG3              	100.00%
Bootstrap support for Q4Q1A9 as seed ortholog is 100%.
Bootstrap support for L0PCG3 as seed ortholog is 100%.

Group of orthologs #633. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.jiroveci:97

Q4QBI9              	100.00%		L0PEH9              	100.00%
Bootstrap support for Q4QBI9 as seed ortholog is 100%.
Bootstrap support for L0PEH9 as seed ortholog is 100%.

Group of orthologs #634. Best score 97 bits
Score difference with first non-orthologous sequence - L.major:97 P.jiroveci:51

Q86MW5              	100.00%		L0P9D5              	100.00%
Bootstrap support for Q86MW5 as seed ortholog is 100%.
Bootstrap support for L0P9D5 as seed ortholog is 94%.

Group of orthologs #635. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:1 P.jiroveci:96

Q4Q8P9              	100.00%		L0PBR7              	100.00%
                    	       		L0PC11              	25.53%
Bootstrap support for Q4Q8P9 as seed ortholog is 44%.
Alternative seed ortholog is Q4QHP1 (1 bits away from this cluster)
Bootstrap support for L0PBR7 as seed ortholog is 100%.

Group of orthologs #636. Best score 96 bits
Score difference with first non-orthologous sequence - L.major:47 P.jiroveci:96

Q4Q0W7              	100.00%		L0PEV3              	100.00%
Bootstrap support for Q4Q0W7 as seed ortholog is 95%.
Bootstrap support for L0PEV3 as seed ortholog is 100%.

Group of orthologs #637. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:95 P.jiroveci:95

E9ADG9              	100.00%		L0PG04              	100.00%
Bootstrap support for E9ADG9 as seed ortholog is 100%.
Bootstrap support for L0PG04 as seed ortholog is 100%.

Group of orthologs #638. Best score 95 bits
Score difference with first non-orthologous sequence - L.major:95 P.jiroveci:95

Q4QIS4              	100.00%		L0PFY6              	100.00%
Bootstrap support for Q4QIS4 as seed ortholog is 100%.
Bootstrap support for L0PFY6 as seed ortholog is 100%.

Group of orthologs #639. Best score 94 bits
Score difference with first non-orthologous sequence - L.major:94 P.jiroveci:94

Q4QBK9              	100.00%		L0PEV4              	100.00%
Bootstrap support for Q4QBK9 as seed ortholog is 100%.
Bootstrap support for L0PEV4 as seed ortholog is 100%.

Group of orthologs #640. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:51 P.jiroveci:93

Q4Q1L9              	100.00%		L0PCJ5              	100.00%
                    	       		L0P6T2              	12.63%
Bootstrap support for Q4Q1L9 as seed ortholog is 89%.
Bootstrap support for L0PCJ5 as seed ortholog is 100%.

Group of orthologs #641. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:45 P.jiroveci:93

E9ADP0              	100.00%		L0PHJ3              	100.00%
Bootstrap support for E9ADP0 as seed ortholog is 97%.
Bootstrap support for L0PHJ3 as seed ortholog is 100%.

Group of orthologs #642. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:93 P.jiroveci:93

Q4Q8W4              	100.00%		L0P746              	100.00%
Bootstrap support for Q4Q8W4 as seed ortholog is 100%.
Bootstrap support for L0P746 as seed ortholog is 100%.

Group of orthologs #643. Best score 93 bits
Score difference with first non-orthologous sequence - L.major:13 P.jiroveci:93

Q4Q989              	100.00%		L0PD86              	100.00%
Bootstrap support for Q4Q989 as seed ortholog is 73%.
Alternative seed ortholog is Q4Q612 (13 bits away from this cluster)
Bootstrap support for L0PD86 as seed ortholog is 100%.

Group of orthologs #644. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.jiroveci:92

Q4QIE0              	100.00%		L0PD77              	100.00%
Q4Q597              	13.57%		
Q4Q596              	13.07%		
Bootstrap support for Q4QIE0 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 100%.

Group of orthologs #645. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.jiroveci:92

Q4Q567              	100.00%		L0PAB2              	100.00%
Bootstrap support for Q4Q567 as seed ortholog is 100%.
Bootstrap support for L0PAB2 as seed ortholog is 100%.

Group of orthologs #646. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.jiroveci:92

E9AEI5              	100.00%		L0PH96              	100.00%
Bootstrap support for E9AEI5 as seed ortholog is 100%.
Bootstrap support for L0PH96 as seed ortholog is 100%.

Group of orthologs #647. Best score 92 bits
Score difference with first non-orthologous sequence - L.major:92 P.jiroveci:92

Q4QIY6              	100.00%		L0P7A1              	100.00%
Bootstrap support for Q4QIY6 as seed ortholog is 100%.
Bootstrap support for L0P7A1 as seed ortholog is 100%.

Group of orthologs #648. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:31 P.jiroveci:91

E9AFS7              	100.00%		L0PA97              	100.00%
Bootstrap support for E9AFS7 as seed ortholog is 92%.
Bootstrap support for L0PA97 as seed ortholog is 100%.

Group of orthologs #649. Best score 91 bits
Score difference with first non-orthologous sequence - L.major:91 P.jiroveci:91

Q4Q2R5              	100.00%		L0PEL6              	100.00%
Bootstrap support for Q4Q2R5 as seed ortholog is 100%.
Bootstrap support for L0PEL6 as seed ortholog is 100%.

Group of orthologs #650. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:28 P.jiroveci:90

Q4QHE2              	100.00%		L0PCT4              	100.00%
Q4QHE4              	99.66%		
Bootstrap support for Q4QHE2 as seed ortholog is 72%.
Alternative seed ortholog is Q4Q445 (28 bits away from this cluster)
Bootstrap support for L0PCT4 as seed ortholog is 100%.

Group of orthologs #651. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.jiroveci:90

E9AD06              	100.00%		L0PAS9              	100.00%
Bootstrap support for E9AD06 as seed ortholog is 100%.
Bootstrap support for L0PAS9 as seed ortholog is 100%.

Group of orthologs #652. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.jiroveci:90

Q4Q6Y3              	100.00%		L0PE03              	100.00%
Bootstrap support for Q4Q6Y3 as seed ortholog is 100%.
Bootstrap support for L0PE03 as seed ortholog is 100%.

Group of orthologs #653. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.jiroveci:90

Q4QDA3              	100.00%		L0P9U1              	100.00%
Bootstrap support for Q4QDA3 as seed ortholog is 100%.
Bootstrap support for L0P9U1 as seed ortholog is 100%.

Group of orthologs #654. Best score 90 bits
Score difference with first non-orthologous sequence - L.major:90 P.jiroveci:90

Q9U0V5              	100.00%		L0PE77              	100.00%
Bootstrap support for Q9U0V5 as seed ortholog is 100%.
Bootstrap support for L0PE77 as seed ortholog is 100%.

Group of orthologs #655. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:89 P.jiroveci:89

E9AFZ4              	100.00%		L0PCN2              	100.00%
Bootstrap support for E9AFZ4 as seed ortholog is 100%.
Bootstrap support for L0PCN2 as seed ortholog is 100%.

Group of orthologs #656. Best score 89 bits
Score difference with first non-orthologous sequence - L.major:3 P.jiroveci:89

Q4QBK4              	100.00%		L0PBU9              	100.00%
Bootstrap support for Q4QBK4 as seed ortholog is 56%.
Alternative seed ortholog is Q4Q255 (3 bits away from this cluster)
Bootstrap support for L0PBU9 as seed ortholog is 100%.

Group of orthologs #657. Best score 88 bits
Score difference with first non-orthologous sequence - L.major:46 P.jiroveci:35

Q4Q6P4              	100.00%		L0PDB2              	100.00%
Bootstrap support for Q4Q6P4 as seed ortholog is 89%.
Bootstrap support for L0PDB2 as seed ortholog is 76%.

Group of orthologs #658. Best score 88 bits
Score difference with first non-orthologous sequence - L.major:15 P.jiroveci:88

Q4QDK8              	100.00%		L0PDE4              	100.00%
Bootstrap support for Q4QDK8 as seed ortholog is 68%.
Alternative seed ortholog is Q4Q408 (15 bits away from this cluster)
Bootstrap support for L0PDE4 as seed ortholog is 100%.

Group of orthologs #659. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.jiroveci:87

Q4Q6R5              	100.00%		L0PBR1              	100.00%
Q4Q6R6              	100.00%		
Q4QF62              	8.70%		
Bootstrap support for Q4Q6R5 as seed ortholog is 100%.
Bootstrap support for Q4Q6R6 as seed ortholog is 100%.
Bootstrap support for L0PBR1 as seed ortholog is 100%.

Group of orthologs #660. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:5 P.jiroveci:87

E9ACT0              	100.00%		L0PBK0              	100.00%
Bootstrap support for E9ACT0 as seed ortholog is 61%.
Alternative seed ortholog is Q4QG42 (5 bits away from this cluster)
Bootstrap support for L0PBK0 as seed ortholog is 100%.

Group of orthologs #661. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:25 P.jiroveci:25

E9AEE0              	100.00%		L0PAF0              	100.00%
Bootstrap support for E9AEE0 as seed ortholog is 74%.
Alternative seed ortholog is Q4Q5S5 (25 bits away from this cluster)
Bootstrap support for L0PAF0 as seed ortholog is 79%.

Group of orthologs #662. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.jiroveci:87

Q4Q3M7              	100.00%		L0PAP1              	100.00%
Bootstrap support for Q4Q3M7 as seed ortholog is 100%.
Bootstrap support for L0PAP1 as seed ortholog is 100%.

Group of orthologs #663. Best score 87 bits
Score difference with first non-orthologous sequence - L.major:87 P.jiroveci:87

Q4Q4P3              	100.00%		L0PDD4              	100.00%
Bootstrap support for Q4Q4P3 as seed ortholog is 100%.
Bootstrap support for L0PDD4 as seed ortholog is 100%.

Group of orthologs #664. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:86

Q4Q4D3              	100.00%		L0P7G9              	100.00%
Q4QF84              	100.00%		
Bootstrap support for Q4Q4D3 as seed ortholog is 100%.
Bootstrap support for Q4QF84 as seed ortholog is 100%.
Bootstrap support for L0P7G9 as seed ortholog is 100%.

Group of orthologs #665. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:86

Q4Q8P3              	100.00%		L0P7T6              	100.00%
                    	       		L0PF25              	100.00%
Bootstrap support for Q4Q8P3 as seed ortholog is 100%.
Bootstrap support for L0P7T6 as seed ortholog is 100%.
Bootstrap support for L0PF25 as seed ortholog is 100%.

Group of orthologs #666. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:86

Q4Q9D0              	100.00%		L0PD91              	100.00%
Q4Q9D2              	100.00%		
Bootstrap support for Q4Q9D0 as seed ortholog is 100%.
Bootstrap support for Q4Q9D2 as seed ortholog is 100%.
Bootstrap support for L0PD91 as seed ortholog is 100%.

Group of orthologs #667. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:86

E9AF03              	100.00%		L0P935              	100.00%
Bootstrap support for E9AF03 as seed ortholog is 100%.
Bootstrap support for L0P935 as seed ortholog is 100%.

Group of orthologs #668. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:86

E9AC00              	100.00%		L0PFV4              	100.00%
Bootstrap support for E9AC00 as seed ortholog is 100%.
Bootstrap support for L0PFV4 as seed ortholog is 100%.

Group of orthologs #669. Best score 86 bits
Score difference with first non-orthologous sequence - L.major:86 P.jiroveci:86

Q4Q7N4              	100.00%		L0P8K4              	100.00%
Bootstrap support for Q4Q7N4 as seed ortholog is 100%.
Bootstrap support for L0P8K4 as seed ortholog is 100%.

Group of orthologs #670. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:85 P.jiroveci:85

E9ACJ7              	100.00%		L0PBS9              	100.00%
Bootstrap support for E9ACJ7 as seed ortholog is 100%.
Bootstrap support for L0PBS9 as seed ortholog is 100%.

Group of orthologs #671. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:85 P.jiroveci:85

Q4Q512              	100.00%		L0PBW9              	100.00%
Bootstrap support for Q4Q512 as seed ortholog is 100%.
Bootstrap support for L0PBW9 as seed ortholog is 100%.

Group of orthologs #672. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:85 P.jiroveci:85

Q4Q734              	100.00%		L0PFW7              	100.00%
Bootstrap support for Q4Q734 as seed ortholog is 100%.
Bootstrap support for L0PFW7 as seed ortholog is 100%.

Group of orthologs #673. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:29 P.jiroveci:1

Q4QAC1              	100.00%		L0PEF8              	100.00%
Bootstrap support for Q4QAC1 as seed ortholog is 77%.
Bootstrap support for L0PEF8 as seed ortholog is 50%.
Alternative seed ortholog is L0PDW2 (1 bits away from this cluster)

Group of orthologs #674. Best score 85 bits
Score difference with first non-orthologous sequence - L.major:85 P.jiroveci:85

Q4QHC9              	100.00%		L0P9T3              	100.00%
Bootstrap support for Q4QHC9 as seed ortholog is 100%.
Bootstrap support for L0P9T3 as seed ortholog is 100%.

Group of orthologs #675. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.jiroveci:84

Q4QGP0              	100.00%		L0P939              	100.00%
                    	       		L0PFG4              	89.87%
Bootstrap support for Q4QGP0 as seed ortholog is 100%.
Bootstrap support for L0P939 as seed ortholog is 100%.

Group of orthologs #676. Best score 84 bits
Score difference with first non-orthologous sequence - L.major:84 P.jiroveci:84

Q4Q6Y6              	100.00%		L0PCV8              	100.00%
Bootstrap support for Q4Q6Y6 as seed ortholog is 100%.
Bootstrap support for L0PCV8 as seed ortholog is 100%.

Group of orthologs #677. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:9 P.jiroveci:82

E9ACW4              	100.00%		L0P903              	100.00%
Bootstrap support for E9ACW4 as seed ortholog is 59%.
Alternative seed ortholog is Q4QAC7 (9 bits away from this cluster)
Bootstrap support for L0P903 as seed ortholog is 100%.

Group of orthologs #678. Best score 82 bits
Score difference with first non-orthologous sequence - L.major:82 P.jiroveci:82

Q4Q055              	100.00%		L0P6R7              	100.00%
Bootstrap support for Q4Q055 as seed ortholog is 100%.
Bootstrap support for L0P6R7 as seed ortholog is 100%.

Group of orthologs #679. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.jiroveci:81

E9AF44              	100.00%		L0PAD3              	100.00%
Bootstrap support for E9AF44 as seed ortholog is 100%.
Bootstrap support for L0PAD3 as seed ortholog is 100%.

Group of orthologs #680. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:17 P.jiroveci:81

Q4Q130              	100.00%		L0P990              	100.00%
Bootstrap support for Q4Q130 as seed ortholog is 75%.
Bootstrap support for L0P990 as seed ortholog is 100%.

Group of orthologs #681. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.jiroveci:81

Q4Q1L1              	100.00%		L0PDJ6              	100.00%
Bootstrap support for Q4Q1L1 as seed ortholog is 100%.
Bootstrap support for L0PDJ6 as seed ortholog is 100%.

Group of orthologs #682. Best score 81 bits
Score difference with first non-orthologous sequence - L.major:81 P.jiroveci:81

Q4QFJ7              	100.00%		L0PAH2              	100.00%
Bootstrap support for Q4QFJ7 as seed ortholog is 100%.
Bootstrap support for L0PAH2 as seed ortholog is 100%.

Group of orthologs #683. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.jiroveci:80

E9ACI8              	100.00%		L0P9H0              	100.00%
Bootstrap support for E9ACI8 as seed ortholog is 100%.
Bootstrap support for L0P9H0 as seed ortholog is 100%.

Group of orthologs #684. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:14 P.jiroveci:80

E9AD58              	100.00%		L0PA37              	100.00%
Bootstrap support for E9AD58 as seed ortholog is 81%.
Bootstrap support for L0PA37 as seed ortholog is 100%.

Group of orthologs #685. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.jiroveci:80

Q4Q0X2              	100.00%		L0PCZ2              	100.00%
Bootstrap support for Q4Q0X2 as seed ortholog is 100%.
Bootstrap support for L0PCZ2 as seed ortholog is 100%.

Group of orthologs #686. Best score 80 bits
Score difference with first non-orthologous sequence - L.major:80 P.jiroveci:80

Q4Q8U3              	100.00%		L0PFD1              	100.00%
Bootstrap support for Q4Q8U3 as seed ortholog is 100%.
Bootstrap support for L0PFD1 as seed ortholog is 100%.

Group of orthologs #687. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:7

E9ADA6              	100.00%		L0PH42              	100.00%
Q4Q7I3              	100.00%		
Bootstrap support for E9ADA6 as seed ortholog is 100%.
Bootstrap support for Q4Q7I3 as seed ortholog is 100%.
Bootstrap support for L0PH42 as seed ortholog is 42%.
Alternative seed ortholog is L0PCQ6 (7 bits away from this cluster)

Group of orthologs #688. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:79

Q4Q088              	100.00%		L0P9V0              	100.00%
Bootstrap support for Q4Q088 as seed ortholog is 100%.
Bootstrap support for L0P9V0 as seed ortholog is 100%.

Group of orthologs #689. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:79

Q4Q1C7              	100.00%		L0PEX0              	100.00%
Bootstrap support for Q4Q1C7 as seed ortholog is 100%.
Bootstrap support for L0PEX0 as seed ortholog is 100%.

Group of orthologs #690. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:79

Q4Q7N8              	100.00%		L0PAJ6              	100.00%
Bootstrap support for Q4Q7N8 as seed ortholog is 100%.
Bootstrap support for L0PAJ6 as seed ortholog is 100%.

Group of orthologs #691. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:79

Q4Q5L3              	100.00%		L0PD30              	100.00%
Bootstrap support for Q4Q5L3 as seed ortholog is 100%.
Bootstrap support for L0PD30 as seed ortholog is 100%.

Group of orthologs #692. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:79

Q4QIC2              	100.00%		L0PB42              	100.00%
Bootstrap support for Q4QIC2 as seed ortholog is 100%.
Bootstrap support for L0PB42 as seed ortholog is 100%.

Group of orthologs #693. Best score 79 bits
Score difference with first non-orthologous sequence - L.major:79 P.jiroveci:79

Q4QII4              	100.00%		L0PH83              	100.00%
Bootstrap support for Q4QII4 as seed ortholog is 100%.
Bootstrap support for L0PH83 as seed ortholog is 100%.

Group of orthologs #694. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.jiroveci:78

E9AF24              	100.00%		L0P9D6              	100.00%
Bootstrap support for E9AF24 as seed ortholog is 100%.
Bootstrap support for L0P9D6 as seed ortholog is 100%.

Group of orthologs #695. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.jiroveci:78

Q4Q7P0              	100.00%		L0PGH5              	100.00%
Bootstrap support for Q4Q7P0 as seed ortholog is 100%.
Bootstrap support for L0PGH5 as seed ortholog is 100%.

Group of orthologs #696. Best score 78 bits
Score difference with first non-orthologous sequence - L.major:78 P.jiroveci:78

Q4QFG4              	100.00%		L0PEK0              	100.00%
Bootstrap support for Q4QFG4 as seed ortholog is 100%.
Bootstrap support for L0PEK0 as seed ortholog is 100%.

Group of orthologs #697. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.jiroveci:77

Q4Q1X7              	100.00%		L0PD00              	100.00%
Bootstrap support for Q4Q1X7 as seed ortholog is 100%.
Bootstrap support for L0PD00 as seed ortholog is 100%.

Group of orthologs #698. Best score 77 bits
Score difference with first non-orthologous sequence - L.major:77 P.jiroveci:77

Q4QDK2              	100.00%		L0P7D7              	100.00%
Bootstrap support for Q4QDK2 as seed ortholog is 100%.
Bootstrap support for L0P7D7 as seed ortholog is 100%.

Group of orthologs #699. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.jiroveci:76

Q4Q266              	100.00%		L0PBD4              	100.00%
Bootstrap support for Q4Q266 as seed ortholog is 100%.
Bootstrap support for L0PBD4 as seed ortholog is 100%.

Group of orthologs #700. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:76 P.jiroveci:76

Q4QHE1              	100.00%		L0PDX2              	100.00%
Bootstrap support for Q4QHE1 as seed ortholog is 100%.
Bootstrap support for L0PDX2 as seed ortholog is 100%.

Group of orthologs #701. Best score 76 bits
Score difference with first non-orthologous sequence - L.major:31 P.jiroveci:76

Q4QHV8              	100.00%		L0PF35              	100.00%
Bootstrap support for Q4QHV8 as seed ortholog is 77%.
Bootstrap support for L0PF35 as seed ortholog is 100%.

Group of orthologs #702. Best score 75 bits
Score difference with first non-orthologous sequence - L.major:75 P.jiroveci:75

Q4QAB9              	100.00%		L0PC82              	100.00%
Bootstrap support for Q4QAB9 as seed ortholog is 100%.
Bootstrap support for L0PC82 as seed ortholog is 100%.

Group of orthologs #703. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

E9AFT6              	100.00%		L0PAD9              	100.00%
Bootstrap support for E9AFT6 as seed ortholog is 100%.
Bootstrap support for L0PAD9 as seed ortholog is 100%.

Group of orthologs #704. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

Q4Q1W6              	100.00%		L0PA83              	100.00%
Bootstrap support for Q4Q1W6 as seed ortholog is 100%.
Bootstrap support for L0PA83 as seed ortholog is 100%.

Group of orthologs #705. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

Q4Q0A1              	100.00%		L0PDN1              	100.00%
Bootstrap support for Q4Q0A1 as seed ortholog is 100%.
Bootstrap support for L0PDN1 as seed ortholog is 100%.

Group of orthologs #706. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

E9ADE3              	100.00%		L0PGR5              	100.00%
Bootstrap support for E9ADE3 as seed ortholog is 100%.
Bootstrap support for L0PGR5 as seed ortholog is 100%.

Group of orthologs #707. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:12 P.jiroveci:74

Q4Q9M0              	100.00%		L0P914              	100.00%
Bootstrap support for Q4Q9M0 as seed ortholog is 66%.
Alternative seed ortholog is Q4Q752 (12 bits away from this cluster)
Bootstrap support for L0P914 as seed ortholog is 100%.

Group of orthologs #708. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

Q4QC21              	100.00%		L0PC75              	100.00%
Bootstrap support for Q4QC21 as seed ortholog is 100%.
Bootstrap support for L0PC75 as seed ortholog is 100%.

Group of orthologs #709. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

Q4QGU3              	100.00%		L0P834              	100.00%
Bootstrap support for Q4QGU3 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 100%.

Group of orthologs #710. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:74 P.jiroveci:74

Q4QFW1              	100.00%		L0PDT5              	100.00%
Bootstrap support for Q4QFW1 as seed ortholog is 100%.
Bootstrap support for L0PDT5 as seed ortholog is 100%.

Group of orthologs #711. Best score 74 bits
Score difference with first non-orthologous sequence - L.major:30 P.jiroveci:74

Q4QHM6              	100.00%		L0PHH5              	100.00%
Bootstrap support for Q4QHM6 as seed ortholog is 93%.
Bootstrap support for L0PHH5 as seed ortholog is 100%.

Group of orthologs #712. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:4 P.jiroveci:73

Q4QAI6              	100.00%		L0PCS6              	100.00%
Q4QJG3              	14.79%		
Q4QIJ9              	10.27%		
Q4QFK4              	7.53%		
Bootstrap support for Q4QAI6 as seed ortholog is 51%.
Alternative seed ortholog is E9AD33 (4 bits away from this cluster)
Bootstrap support for L0PCS6 as seed ortholog is 100%.

Group of orthologs #713. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.jiroveci:73

Q4Q0T2              	100.00%		L0PFX4              	100.00%
Bootstrap support for Q4Q0T2 as seed ortholog is 100%.
Bootstrap support for L0PFX4 as seed ortholog is 100%.

Group of orthologs #714. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.jiroveci:73

Q4QA12              	100.00%		L0PE66              	100.00%
Bootstrap support for Q4QA12 as seed ortholog is 100%.
Bootstrap support for L0PE66 as seed ortholog is 100%.

Group of orthologs #715. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:73 P.jiroveci:73

Q4QDZ6              	100.00%		L0PD90              	100.00%
Bootstrap support for Q4QDZ6 as seed ortholog is 100%.
Bootstrap support for L0PD90 as seed ortholog is 100%.

Group of orthologs #716. Best score 73 bits
Score difference with first non-orthologous sequence - L.major:8 P.jiroveci:73

Q4QF32              	100.00%		L0PDG4              	100.00%
Bootstrap support for Q4QF32 as seed ortholog is 71%.
Alternative seed ortholog is Q4Q2E3 (8 bits away from this cluster)
Bootstrap support for L0PDG4 as seed ortholog is 100%.

Group of orthologs #717. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.jiroveci:72

Q4Q684              	100.00%		L0PCN8              	100.00%
Bootstrap support for Q4Q684 as seed ortholog is 100%.
Bootstrap support for L0PCN8 as seed ortholog is 100%.

Group of orthologs #718. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.jiroveci:72

Q4QBT0              	100.00%		L0PB99              	100.00%
Bootstrap support for Q4QBT0 as seed ortholog is 100%.
Bootstrap support for L0PB99 as seed ortholog is 100%.

Group of orthologs #719. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:18 P.jiroveci:72

Q4QCL7              	100.00%		L0PCX3              	100.00%
Bootstrap support for Q4QCL7 as seed ortholog is 50%.
Alternative seed ortholog is E9AFI4 (18 bits away from this cluster)
Bootstrap support for L0PCX3 as seed ortholog is 100%.

Group of orthologs #720. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.jiroveci:72

Q4QEZ1              	100.00%		L0PC08              	100.00%
Bootstrap support for Q4QEZ1 as seed ortholog is 100%.
Bootstrap support for L0PC08 as seed ortholog is 100%.

Group of orthologs #721. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.jiroveci:72

Q4Q9Y8              	100.00%		L0PII9              	100.00%
Bootstrap support for Q4Q9Y8 as seed ortholog is 100%.
Bootstrap support for L0PII9 as seed ortholog is 100%.

Group of orthologs #722. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:72 P.jiroveci:72

Q4QE56              	100.00%		L0PH23              	100.00%
Bootstrap support for Q4QE56 as seed ortholog is 100%.
Bootstrap support for L0PH23 as seed ortholog is 100%.

Group of orthologs #723. Best score 72 bits
Score difference with first non-orthologous sequence - L.major:29 P.jiroveci:72

Q9XZY9              	100.00%		L0PDS6              	100.00%
Bootstrap support for Q9XZY9 as seed ortholog is 78%.
Bootstrap support for L0PDS6 as seed ortholog is 100%.

Group of orthologs #724. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

E9ACN7              	100.00%		L0PEB3              	100.00%
Q4QJC1              	7.26%		
Q4QA90              	6.72%		
Bootstrap support for E9ACN7 as seed ortholog is 100%.
Bootstrap support for L0PEB3 as seed ortholog is 100%.

Group of orthologs #725. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

E9ADK9              	100.00%		L0PA43              	100.00%
Bootstrap support for E9ADK9 as seed ortholog is 100%.
Bootstrap support for L0PA43 as seed ortholog is 100%.

Group of orthologs #726. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

E9AFF2              	100.00%		L0P940              	100.00%
Bootstrap support for E9AFF2 as seed ortholog is 100%.
Bootstrap support for L0P940 as seed ortholog is 100%.

Group of orthologs #727. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

Q4Q0P5              	100.00%		L0PCX8              	100.00%
Bootstrap support for Q4Q0P5 as seed ortholog is 100%.
Bootstrap support for L0PCX8 as seed ortholog is 100%.

Group of orthologs #728. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

Q4Q9L6              	100.00%		L0P7S7              	100.00%
Bootstrap support for Q4Q9L6 as seed ortholog is 100%.
Bootstrap support for L0P7S7 as seed ortholog is 100%.

Group of orthologs #729. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

Q4QAW7              	100.00%		L0PBZ4              	100.00%
Bootstrap support for Q4QAW7 as seed ortholog is 100%.
Bootstrap support for L0PBZ4 as seed ortholog is 100%.

Group of orthologs #730. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

Q4QCG1              	100.00%		L0PCT7              	100.00%
Bootstrap support for Q4QCG1 as seed ortholog is 100%.
Bootstrap support for L0PCT7 as seed ortholog is 100%.

Group of orthologs #731. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

Q4QEW7              	100.00%		L0PG08              	100.00%
Bootstrap support for Q4QEW7 as seed ortholog is 100%.
Bootstrap support for L0PG08 as seed ortholog is 100%.

Group of orthologs #732. Best score 71 bits
Score difference with first non-orthologous sequence - L.major:71 P.jiroveci:71

Q4QHL3              	100.00%		L0PG13              	100.00%
Bootstrap support for Q4QHL3 as seed ortholog is 100%.
Bootstrap support for L0PG13 as seed ortholog is 100%.

Group of orthologs #733. Best score 70 bits
Score difference with first non-orthologous sequence - L.major:70 P.jiroveci:70

Q4Q9E1              	100.00%		L0PD70              	100.00%
                    	       		L0P9Q7              	84.18%
Bootstrap support for Q4Q9E1 as seed ortholog is 100%.
Bootstrap support for L0PD70 as seed ortholog is 100%.

Group of orthologs #734. Best score 70 bits
Score difference with first non-orthologous sequence - L.major:70 P.jiroveci:70

Q4Q931              	100.00%		L0P8G4              	100.00%
Bootstrap support for Q4Q931 as seed ortholog is 100%.
Bootstrap support for L0P8G4 as seed ortholog is 100%.

Group of orthologs #735. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.jiroveci:69

E9AEI8              	100.00%		L0P938              	100.00%
Bootstrap support for E9AEI8 as seed ortholog is 100%.
Bootstrap support for L0P938 as seed ortholog is 100%.

Group of orthologs #736. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.jiroveci:69

Q4Q7W1              	100.00%		L0PCF7              	100.00%
Bootstrap support for Q4Q7W1 as seed ortholog is 100%.
Bootstrap support for L0PCF7 as seed ortholog is 100%.

Group of orthologs #737. Best score 69 bits
Score difference with first non-orthologous sequence - L.major:69 P.jiroveci:69

Q4QGF2              	100.00%		L0PFS1              	100.00%
Bootstrap support for Q4QGF2 as seed ortholog is 100%.
Bootstrap support for L0PFS1 as seed ortholog is 100%.

Group of orthologs #738. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:68 P.jiroveci:68

Q4Q7I2              	100.00%		L0P9Z6              	100.00%
Bootstrap support for Q4Q7I2 as seed ortholog is 100%.
Bootstrap support for L0P9Z6 as seed ortholog is 100%.

Group of orthologs #739. Best score 68 bits
Score difference with first non-orthologous sequence - L.major:68 P.jiroveci:68

Q4QDI1              	100.00%		L0PAG4              	100.00%
Bootstrap support for Q4QDI1 as seed ortholog is 100%.
Bootstrap support for L0PAG4 as seed ortholog is 100%.

Group of orthologs #740. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.jiroveci:67

E9ACG0              	100.00%		L0PA67              	100.00%
Bootstrap support for E9ACG0 as seed ortholog is 100%.
Bootstrap support for L0PA67 as seed ortholog is 100%.

Group of orthologs #741. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.jiroveci:67

E9AC87              	100.00%		L0PDI7              	100.00%
Bootstrap support for E9AC87 as seed ortholog is 100%.
Bootstrap support for L0PDI7 as seed ortholog is 100%.

Group of orthologs #742. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.jiroveci:23

Q4Q3L7              	100.00%		L0P9W6              	100.00%
Bootstrap support for Q4Q3L7 as seed ortholog is 100%.
Bootstrap support for L0P9W6 as seed ortholog is 85%.

Group of orthologs #743. Best score 67 bits
Score difference with first non-orthologous sequence - L.major:67 P.jiroveci:67

Q4QAL1              	100.00%		L0PEP9              	100.00%
Bootstrap support for Q4QAL1 as seed ortholog is 100%.
Bootstrap support for L0PEP9 as seed ortholog is 100%.

Group of orthologs #744. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:21 P.jiroveci:66

E9AC16              	100.00%		L0P9W7              	100.00%
Bootstrap support for E9AC16 as seed ortholog is 86%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #745. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.jiroveci:66

E9ADI4              	100.00%		L0PAM7              	100.00%
Bootstrap support for E9ADI4 as seed ortholog is 100%.
Bootstrap support for L0PAM7 as seed ortholog is 100%.

Group of orthologs #746. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.jiroveci:66

O15922              	100.00%		L0PBX9              	100.00%
Bootstrap support for O15922 as seed ortholog is 100%.
Bootstrap support for L0PBX9 as seed ortholog is 100%.

Group of orthologs #747. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.jiroveci:66

Q4Q7D8              	100.00%		L0PAV4              	100.00%
Bootstrap support for Q4Q7D8 as seed ortholog is 100%.
Bootstrap support for L0PAV4 as seed ortholog is 100%.

Group of orthologs #748. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.jiroveci:66

Q4Q0Z5              	100.00%		L0PHQ1              	100.00%
Bootstrap support for Q4Q0Z5 as seed ortholog is 100%.
Bootstrap support for L0PHQ1 as seed ortholog is 100%.

Group of orthologs #749. Best score 66 bits
Score difference with first non-orthologous sequence - L.major:66 P.jiroveci:66

Q4QDC2              	100.00%		L0PC28              	100.00%
Bootstrap support for Q4QDC2 as seed ortholog is 100%.
Bootstrap support for L0PC28 as seed ortholog is 100%.

Group of orthologs #750. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.jiroveci:65

E9AF13              	100.00%		L0P9F1              	100.00%
Q4QCE1              	100.00%		
Bootstrap support for E9AF13 as seed ortholog is 100%.
Bootstrap support for Q4QCE1 as seed ortholog is 100%.
Bootstrap support for L0P9F1 as seed ortholog is 100%.

Group of orthologs #751. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:4 P.jiroveci:65

E9ACV5              	100.00%		L0PCZ0              	100.00%
Q4QIG6              	8.60%		
Bootstrap support for E9ACV5 as seed ortholog is 55%.
Alternative seed ortholog is Q4QC67 (4 bits away from this cluster)
Bootstrap support for L0PCZ0 as seed ortholog is 100%.

Group of orthologs #752. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.jiroveci:65

Q4Q8B8              	100.00%		L0PBQ7              	100.00%
Q4Q8B9              	100.00%		
Bootstrap support for Q4Q8B8 as seed ortholog is 100%.
Bootstrap support for Q4Q8B9 as seed ortholog is 100%.
Bootstrap support for L0PBQ7 as seed ortholog is 100%.

Group of orthologs #753. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.jiroveci:65

E9AEJ8              	100.00%		L0PEE1              	100.00%
Bootstrap support for E9AEJ8 as seed ortholog is 100%.
Bootstrap support for L0PEE1 as seed ortholog is 100%.

Group of orthologs #754. Best score 65 bits
Score difference with first non-orthologous sequence - L.major:65 P.jiroveci:65

Q4QA77              	100.00%		L0PFG2              	100.00%
Bootstrap support for Q4QA77 as seed ortholog is 100%.
Bootstrap support for L0PFG2 as seed ortholog is 100%.

Group of orthologs #755. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.jiroveci:64

E9AE97              	100.00%		L0PBG3              	100.00%
Bootstrap support for E9AE97 as seed ortholog is 100%.
Bootstrap support for L0PBG3 as seed ortholog is 100%.

Group of orthologs #756. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.jiroveci:64

Q4Q8S1              	100.00%		L0PAW7              	100.00%
Bootstrap support for Q4Q8S1 as seed ortholog is 100%.
Bootstrap support for L0PAW7 as seed ortholog is 100%.

Group of orthologs #757. Best score 64 bits
Score difference with first non-orthologous sequence - L.major:64 P.jiroveci:64

Q4QJ82              	100.00%		L0PG35              	100.00%
Bootstrap support for Q4QJ82 as seed ortholog is 100%.
Bootstrap support for L0PG35 as seed ortholog is 100%.

Group of orthologs #758. Best score 63 bits
Score difference with first non-orthologous sequence - L.major:63 P.jiroveci:63

Q4Q9Q1              	100.00%		L0PEE9              	100.00%
Bootstrap support for Q4Q9Q1 as seed ortholog is 100%.
Bootstrap support for L0PEE9 as seed ortholog is 100%.

Group of orthologs #759. Best score 63 bits
Score difference with first non-orthologous sequence - L.major:63 P.jiroveci:63

Q4QHV7              	100.00%		L0P9A5              	100.00%
Bootstrap support for Q4QHV7 as seed ortholog is 100%.
Bootstrap support for L0P9A5 as seed ortholog is 100%.

Group of orthologs #760. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.jiroveci:62

Q4Q660              	100.00%		L0P7D2              	100.00%
Q4Q673              	100.00%		
Q4Q426              	59.59%		
Bootstrap support for Q4Q660 as seed ortholog is 100%.
Bootstrap support for Q4Q673 as seed ortholog is 100%.
Bootstrap support for L0P7D2 as seed ortholog is 100%.

Group of orthologs #761. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.jiroveci:62

Q4Q3G4              	100.00%		L0PEF7              	100.00%
Q4Q9X4              	100.00%		
Bootstrap support for Q4Q3G4 as seed ortholog is 100%.
Bootstrap support for Q4Q9X4 as seed ortholog is 100%.
Bootstrap support for L0PEF7 as seed ortholog is 100%.

Group of orthologs #762. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.jiroveci:62

E9AEW3              	100.00%		L0P9F2              	100.00%
Bootstrap support for E9AEW3 as seed ortholog is 100%.
Bootstrap support for L0P9F2 as seed ortholog is 100%.

Group of orthologs #763. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.jiroveci:62

Q4Q6S8              	100.00%		L0PBK9              	100.00%
Bootstrap support for Q4Q6S8 as seed ortholog is 100%.
Bootstrap support for L0PBK9 as seed ortholog is 100%.

Group of orthologs #764. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.jiroveci:62

Q4QDH9              	100.00%		L0P9L0              	100.00%
Bootstrap support for Q4QDH9 as seed ortholog is 100%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #765. Best score 62 bits
Score difference with first non-orthologous sequence - L.major:62 P.jiroveci:62

Q4QCT2              	100.00%		L0PDZ3              	100.00%
Bootstrap support for Q4QCT2 as seed ortholog is 100%.
Bootstrap support for L0PDZ3 as seed ortholog is 100%.

Group of orthologs #766. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:61

Q4Q5F4              	100.00%		L0P7Z9              	100.00%
Bootstrap support for Q4Q5F4 as seed ortholog is 100%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #767. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:61

Q4Q6U6              	100.00%		L0P8Q6              	100.00%
Bootstrap support for Q4Q6U6 as seed ortholog is 100%.
Bootstrap support for L0P8Q6 as seed ortholog is 100%.

Group of orthologs #768. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:3 P.jiroveci:61

Q4Q860              	100.00%		L0PE14              	100.00%
Bootstrap support for Q4Q860 as seed ortholog is 56%.
Alternative seed ortholog is E9ADD4 (3 bits away from this cluster)
Bootstrap support for L0PE14 as seed ortholog is 100%.

Group of orthologs #769. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:61

Q4QG06              	100.00%		L0PE37              	100.00%
Bootstrap support for Q4QG06 as seed ortholog is 100%.
Bootstrap support for L0PE37 as seed ortholog is 100%.

Group of orthologs #770. Best score 61 bits
Score difference with first non-orthologous sequence - L.major:61 P.jiroveci:61

Q4QI70              	100.00%		L0PFT5              	100.00%
Bootstrap support for Q4QI70 as seed ortholog is 100%.
Bootstrap support for L0PFT5 as seed ortholog is 100%.

Group of orthologs #771. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.jiroveci:60

Q4Q8S8              	100.00%		L0P995              	100.00%
Bootstrap support for Q4Q8S8 as seed ortholog is 100%.
Bootstrap support for L0P995 as seed ortholog is 100%.

Group of orthologs #772. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.jiroveci:60

Q4QAX8              	100.00%		L0P8D7              	100.00%
Bootstrap support for Q4QAX8 as seed ortholog is 100%.
Bootstrap support for L0P8D7 as seed ortholog is 100%.

Group of orthologs #773. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.jiroveci:60

Q4QF39              	100.00%		L0PFI5              	100.00%
Bootstrap support for Q4QF39 as seed ortholog is 100%.
Bootstrap support for L0PFI5 as seed ortholog is 100%.

Group of orthologs #774. Best score 60 bits
Score difference with first non-orthologous sequence - L.major:60 P.jiroveci:60

Q9BHE9              	100.00%		L0PE21              	100.00%
Bootstrap support for Q9BHE9 as seed ortholog is 100%.
Bootstrap support for L0PE21 as seed ortholog is 100%.

Group of orthologs #775. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.jiroveci:59

E9AF66              	100.00%		L0PD33              	100.00%
Bootstrap support for E9AF66 as seed ortholog is 100%.
Bootstrap support for L0PD33 as seed ortholog is 100%.

Group of orthologs #776. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.jiroveci:59

Q4Q8I8              	100.00%		L0P8R9              	100.00%
Bootstrap support for Q4Q8I8 as seed ortholog is 100%.
Bootstrap support for L0P8R9 as seed ortholog is 100%.

Group of orthologs #777. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:16 P.jiroveci:59

Q4QB33              	100.00%		L0PAA5              	100.00%
Bootstrap support for Q4QB33 as seed ortholog is 65%.
Alternative seed ortholog is Q4Q2Y6 (16 bits away from this cluster)
Bootstrap support for L0PAA5 as seed ortholog is 100%.

Group of orthologs #778. Best score 59 bits
Score difference with first non-orthologous sequence - L.major:59 P.jiroveci:59

Q4QC01              	100.00%		L0PAE2              	100.00%
Bootstrap support for Q4QC01 as seed ortholog is 100%.
Bootstrap support for L0PAE2 as seed ortholog is 100%.

Group of orthologs #779. Best score 58 bits
Score difference with first non-orthologous sequence - L.major:58 P.jiroveci:58

Q9GRP9              	100.00%		L0PBZ3              	100.00%
Bootstrap support for Q9GRP9 as seed ortholog is 100%.
Bootstrap support for L0PBZ3 as seed ortholog is 100%.

Group of orthologs #780. Best score 56 bits
Score difference with first non-orthologous sequence - L.major:56 P.jiroveci:56

Q4Q138              	100.00%		L0PB34              	100.00%
Bootstrap support for Q4Q138 as seed ortholog is 100%.
Bootstrap support for L0PB34 as seed ortholog is 100%.

Group of orthologs #781. Best score 56 bits
Score difference with first non-orthologous sequence - L.major:56 P.jiroveci:56

Q4Q582              	100.00%		L0PC89              	100.00%
Bootstrap support for Q4Q582 as seed ortholog is 100%.
Bootstrap support for L0PC89 as seed ortholog is 100%.

Group of orthologs #782. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:11 P.jiroveci:55

Q4Q0F2              	100.00%		L0PDX9              	100.00%
Q4Q0F3              	23.16%		
Bootstrap support for Q4Q0F2 as seed ortholog is 63%.
Alternative seed ortholog is Q4Q709 (11 bits away from this cluster)
Bootstrap support for L0PDX9 as seed ortholog is 100%.

Group of orthologs #783. Best score 55 bits
Score difference with first non-orthologous sequence - L.major:55 P.jiroveci:55

Q9N857              	100.00%		L0P7T7              	100.00%
Bootstrap support for Q9N857 as seed ortholog is 100%.
Bootstrap support for L0P7T7 as seed ortholog is 100%.

Group of orthologs #784. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

Q4QGF9              	100.00%		L0PAF2              	100.00%
Q4Q808              	6.13%		
Bootstrap support for Q4QGF9 as seed ortholog is 100%.
Bootstrap support for L0PAF2 as seed ortholog is 100%.

Group of orthologs #785. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

Q4QED0              	100.00%		L0PFM9              	100.00%
Q4QED2              	83.56%		
Bootstrap support for Q4QED0 as seed ortholog is 100%.
Bootstrap support for L0PFM9 as seed ortholog is 100%.

Group of orthologs #786. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

E9AF90              	100.00%		L0P8Q3              	100.00%
Bootstrap support for E9AF90 as seed ortholog is 100%.
Bootstrap support for L0P8Q3 as seed ortholog is 100%.

Group of orthologs #787. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

E9AFI0              	100.00%		L0PBQ3              	100.00%
Bootstrap support for E9AFI0 as seed ortholog is 100%.
Bootstrap support for L0PBQ3 as seed ortholog is 100%.

Group of orthologs #788. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

Q4Q4D5              	100.00%		L0PEH0              	100.00%
Bootstrap support for Q4Q4D5 as seed ortholog is 100%.
Bootstrap support for L0PEH0 as seed ortholog is 100%.

Group of orthologs #789. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

Q4QB46              	100.00%		L0P963              	100.00%
Bootstrap support for Q4QB46 as seed ortholog is 100%.
Bootstrap support for L0P963 as seed ortholog is 100%.

Group of orthologs #790. Best score 54 bits
Score difference with first non-orthologous sequence - L.major:54 P.jiroveci:54

Q4QH64              	100.00%		L0P9C4              	100.00%
Bootstrap support for Q4QH64 as seed ortholog is 100%.
Bootstrap support for L0P9C4 as seed ortholog is 100%.

Group of orthologs #791. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.jiroveci:53

E9ADU0              	100.00%		L0PB77              	100.00%
Bootstrap support for E9ADU0 as seed ortholog is 100%.
Bootstrap support for L0PB77 as seed ortholog is 100%.

Group of orthologs #792. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.jiroveci:53

E9AFS3              	100.00%		L0PFA1              	100.00%
Bootstrap support for E9AFS3 as seed ortholog is 100%.
Bootstrap support for L0PFA1 as seed ortholog is 100%.

Group of orthologs #793. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.jiroveci:53

E9AFN5              	100.00%		L0PGR9              	100.00%
Bootstrap support for E9AFN5 as seed ortholog is 100%.
Bootstrap support for L0PGR9 as seed ortholog is 100%.

Group of orthologs #794. Best score 53 bits
Score difference with first non-orthologous sequence - L.major:53 P.jiroveci:53

Q4Q5H5              	100.00%		L0PCQ5              	100.00%
Bootstrap support for Q4Q5H5 as seed ortholog is 100%.
Bootstrap support for L0PCQ5 as seed ortholog is 100%.

Group of orthologs #795. Best score 52 bits
Score difference with first non-orthologous sequence - L.major:52 P.jiroveci:52

Q4QHQ0              	100.00%		L0P9X3              	100.00%
Bootstrap support for Q4QHQ0 as seed ortholog is 100%.
Bootstrap support for L0P9X3 as seed ortholog is 100%.

Group of orthologs #796. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:50

Q4Q768              	100.00%		L0P6S2              	100.00%
Bootstrap support for Q4Q768 as seed ortholog is 100%.
Bootstrap support for L0P6S2 as seed ortholog is 100%.

Group of orthologs #797. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:50

Q4Q501              	100.00%		L0PAW0              	100.00%
Bootstrap support for Q4Q501 as seed ortholog is 100%.
Bootstrap support for L0PAW0 as seed ortholog is 100%.

Group of orthologs #798. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:50

Q4Q2F6              	100.00%		L0PE32              	100.00%
Bootstrap support for Q4Q2F6 as seed ortholog is 100%.
Bootstrap support for L0PE32 as seed ortholog is 100%.

Group of orthologs #799. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:50

Q4Q5W9              	100.00%		L0PFR0              	100.00%
Bootstrap support for Q4Q5W9 as seed ortholog is 100%.
Bootstrap support for L0PFR0 as seed ortholog is 100%.

Group of orthologs #800. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:50

Q4QI29              	100.00%		L0PDN9              	100.00%
Bootstrap support for Q4QI29 as seed ortholog is 100%.
Bootstrap support for L0PDN9 as seed ortholog is 100%.

Group of orthologs #801. Best score 50 bits
Score difference with first non-orthologous sequence - L.major:50 P.jiroveci:50

Q4QJ75              	100.00%		L0PEH3              	100.00%
Bootstrap support for Q4QJ75 as seed ortholog is 100%.
Bootstrap support for L0PEH3 as seed ortholog is 100%.

Group of orthologs #802. Best score 49 bits
Score difference with first non-orthologous sequence - L.major:49 P.jiroveci:49

Q4Q452              	100.00%		L0PC72              	100.00%
Bootstrap support for Q4Q452 as seed ortholog is 100%.
Bootstrap support for L0PC72 as seed ortholog is 100%.

Group of orthologs #803. Best score 49 bits
Score difference with first non-orthologous sequence - L.major:49 P.jiroveci:49

Q4QAC6              	100.00%		L0P881              	100.00%
Bootstrap support for Q4QAC6 as seed ortholog is 100%.
Bootstrap support for L0P881 as seed ortholog is 100%.

Group of orthologs #804. Best score 49 bits
Score difference with first non-orthologous sequence - L.major:49 P.jiroveci:49

Q4Q574              	100.00%		L0PDF0              	100.00%
Bootstrap support for Q4Q574 as seed ortholog is 100%.
Bootstrap support for L0PDF0 as seed ortholog is 100%.

Group of orthologs #805. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.jiroveci:48

Q4Q9J1              	100.00%		L0PD19              	100.00%
Bootstrap support for Q4Q9J1 as seed ortholog is 100%.
Bootstrap support for L0PD19 as seed ortholog is 100%.

Group of orthologs #806. Best score 48 bits
Score difference with first non-orthologous sequence - L.major:48 P.jiroveci:48

Q4QF28              	100.00%		L0PBR0              	100.00%
Bootstrap support for Q4QF28 as seed ortholog is 100%.
Bootstrap support for L0PBR0 as seed ortholog is 100%.

Group of orthologs #807. Best score 47 bits
Score difference with first non-orthologous sequence - L.major:47 P.jiroveci:47

E9AC24              	100.00%		L0PAK0              	100.00%
Bootstrap support for E9AC24 as seed ortholog is 100%.
Bootstrap support for L0PAK0 as seed ortholog is 100%.

Group of orthologs #808. Best score 47 bits
Score difference with first non-orthologous sequence - L.major:47 P.jiroveci:47

Q9U0T7              	100.00%		L0PFT7              	100.00%
Bootstrap support for Q9U0T7 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #809. Best score 46 bits
Score difference with first non-orthologous sequence - L.major:46 P.jiroveci:46

Q4Q737              	100.00%		L0P756              	100.00%
Bootstrap support for Q4Q737 as seed ortholog is 100%.
Bootstrap support for L0P756 as seed ortholog is 100%.

Group of orthologs #810. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.jiroveci:45

Q4Q488              	100.00%		L0P7C7              	100.00%
Bootstrap support for Q4Q488 as seed ortholog is 100%.
Bootstrap support for L0P7C7 as seed ortholog is 100%.

Group of orthologs #811. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.jiroveci:45

Q4Q4S6              	100.00%		L0PB17              	100.00%
Bootstrap support for Q4Q4S6 as seed ortholog is 100%.
Bootstrap support for L0PB17 as seed ortholog is 100%.

Group of orthologs #812. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.jiroveci:45

Q4Q7C6              	100.00%		L0PG69              	100.00%
Bootstrap support for Q4Q7C6 as seed ortholog is 100%.
Bootstrap support for L0PG69 as seed ortholog is 100%.

Group of orthologs #813. Best score 45 bits
Score difference with first non-orthologous sequence - L.major:45 P.jiroveci:45

Q4QAD9              	100.00%		L0PFK1              	100.00%
Bootstrap support for Q4QAD9 as seed ortholog is 100%.
Bootstrap support for L0PFK1 as seed ortholog is 100%.

Group of orthologs #814. Best score 44 bits
Score difference with first non-orthologous sequence - L.major:44 P.jiroveci:44

Q4Q9C6              	100.00%		L0P811              	100.00%
Bootstrap support for Q4Q9C6 as seed ortholog is 100%.
Bootstrap support for L0P811 as seed ortholog is 100%.

Group of orthologs #815. Best score 44 bits
Score difference with first non-orthologous sequence - L.major:44 P.jiroveci:44

Q4Q8Q8              	100.00%		L0P9R5              	100.00%
Bootstrap support for Q4Q8Q8 as seed ortholog is 100%.
Bootstrap support for L0P9R5 as seed ortholog is 100%.

Group of orthologs #816. Best score 44 bits
Score difference with first non-orthologous sequence - L.major:44 P.jiroveci:44

Q4QDN5              	100.00%		L0PAF5              	100.00%
Bootstrap support for Q4QDN5 as seed ortholog is 100%.
Bootstrap support for L0PAF5 as seed ortholog is 100%.

Group of orthologs #817. Best score 44 bits
Score difference with first non-orthologous sequence - L.major:44 P.jiroveci:44

Q4QHB1              	100.00%		L0P9B0              	100.00%
Bootstrap support for Q4QHB1 as seed ortholog is 100%.
Bootstrap support for L0P9B0 as seed ortholog is 100%.

Group of orthologs #818. Best score 43 bits
Score difference with first non-orthologous sequence - L.major:43 P.jiroveci:43

Q4Q9F6              	100.00%		L0PEV6              	100.00%
Bootstrap support for Q4Q9F6 as seed ortholog is 100%.
Bootstrap support for L0PEV6 as seed ortholog is 100%.

Group of orthologs #819. Best score 43 bits
Score difference with first non-orthologous sequence - L.major:43 P.jiroveci:43

Q4QIH3              	100.00%		L0P7N5              	100.00%
Bootstrap support for Q4QIH3 as seed ortholog is 100%.
Bootstrap support for L0P7N5 as seed ortholog is 100%.

Group of orthologs #820. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.jiroveci:42

Q4Q941              	100.00%		L0P878              	100.00%
Q4Q440              	16.83%		
Q4Q442              	12.38%		
Bootstrap support for Q4Q941 as seed ortholog is 100%.
Bootstrap support for L0P878 as seed ortholog is 100%.

Group of orthologs #821. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.jiroveci:42

E9ADH7              	100.00%		L0PB27              	100.00%
Bootstrap support for E9ADH7 as seed ortholog is 100%.
Bootstrap support for L0PB27 as seed ortholog is 100%.

Group of orthologs #822. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.jiroveci:42

Q4Q5N1              	100.00%		L0P9B7              	100.00%
Bootstrap support for Q4Q5N1 as seed ortholog is 100%.
Bootstrap support for L0P9B7 as seed ortholog is 100%.

Group of orthologs #823. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.jiroveci:42

Q4QJ62              	100.00%		L0PB39              	100.00%
Bootstrap support for Q4QJ62 as seed ortholog is 100%.
Bootstrap support for L0PB39 as seed ortholog is 100%.

Group of orthologs #824. Best score 42 bits
Score difference with first non-orthologous sequence - L.major:42 P.jiroveci:42

Q4QGW7              	100.00%		L0PF02              	100.00%
Bootstrap support for Q4QGW7 as seed ortholog is 100%.
Bootstrap support for L0PF02 as seed ortholog is 100%.

Group of orthologs #825. Best score 40 bits
Score difference with first non-orthologous sequence - L.major:40 P.jiroveci:40

Q4Q3Z5              	100.00%		L0P925              	100.00%
Bootstrap support for Q4Q3Z5 as seed ortholog is 100%.
Bootstrap support for L0P925 as seed ortholog is 100%.