###################################
1454 groups of orthologs
2147 in-paralogs from L.chalumnae
1539 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3659 bits
Score difference with first non-orthologous sequence - L.chalumnae:2410 P.jiroveci:3659

H3B1H3              	100.00%		L0PGR1              	100.00%
Bootstrap support for H3B1H3 as seed ortholog is 100%.
Bootstrap support for L0PGR1 as seed ortholog is 100%.

Group of orthologs #2. Best score 3461 bits
Score difference with first non-orthologous sequence - L.chalumnae:3461 P.jiroveci:3461

H3AQI5              	100.00%		L0PCQ0              	100.00%
Bootstrap support for H3AQI5 as seed ortholog is 100%.
Bootstrap support for L0PCQ0 as seed ortholog is 100%.

Group of orthologs #3. Best score 1972 bits
Score difference with first non-orthologous sequence - L.chalumnae:1972 P.jiroveci:819

H2ZS81              	100.00%		L0PHB1              	100.00%
Bootstrap support for H2ZS81 as seed ortholog is 100%.
Bootstrap support for L0PHB1 as seed ortholog is 100%.

Group of orthologs #4. Best score 1785 bits
Score difference with first non-orthologous sequence - L.chalumnae:610 P.jiroveci:1785

H3AU29              	100.00%		L0P7C3              	100.00%
Bootstrap support for H3AU29 as seed ortholog is 100%.
Bootstrap support for L0P7C3 as seed ortholog is 100%.

Group of orthologs #5. Best score 1768 bits
Score difference with first non-orthologous sequence - L.chalumnae:1768 P.jiroveci:1768

H3AU80              	100.00%		L0PGI2              	100.00%
H3BFJ1              	38.04%		
Bootstrap support for H3AU80 as seed ortholog is 100%.
Bootstrap support for L0PGI2 as seed ortholog is 100%.

Group of orthologs #6. Best score 1748 bits
Score difference with first non-orthologous sequence - L.chalumnae:1748 P.jiroveci:1748

H3AN14              	100.00%		L0PBF5              	100.00%
H3AKV2              	54.11%		
Bootstrap support for H3AN14 as seed ortholog is 100%.
Bootstrap support for L0PBF5 as seed ortholog is 100%.

Group of orthologs #7. Best score 1724 bits
Score difference with first non-orthologous sequence - L.chalumnae:1724 P.jiroveci:1724

H3AVP5              	100.00%		L0PB90              	100.00%
Bootstrap support for H3AVP5 as seed ortholog is 100%.
Bootstrap support for L0PB90 as seed ortholog is 100%.

Group of orthologs #8. Best score 1615 bits
Score difference with first non-orthologous sequence - L.chalumnae:1615 P.jiroveci:1615

H3BCH2              	100.00%		L0PGJ4              	100.00%
Bootstrap support for H3BCH2 as seed ortholog is 100%.
Bootstrap support for L0PGJ4 as seed ortholog is 100%.

Group of orthologs #9. Best score 1421 bits
Score difference with first non-orthologous sequence - L.chalumnae:678 P.jiroveci:1421

H3BBW8              	100.00%		L0PG77              	100.00%
Bootstrap support for H3BBW8 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #10. Best score 1275 bits
Score difference with first non-orthologous sequence - L.chalumnae:1275 P.jiroveci:1275

H3B4L8              	100.00%		L0PG53              	100.00%
Bootstrap support for H3B4L8 as seed ortholog is 100%.
Bootstrap support for L0PG53 as seed ortholog is 100%.

Group of orthologs #11. Best score 1267 bits
Score difference with first non-orthologous sequence - L.chalumnae:1267 P.jiroveci:1267

H3BGV0              	100.00%		L0PB43              	100.00%
Bootstrap support for H3BGV0 as seed ortholog is 100%.
Bootstrap support for L0PB43 as seed ortholog is 100%.

Group of orthologs #12. Best score 1197 bits
Score difference with first non-orthologous sequence - L.chalumnae:1131 P.jiroveci:1197

H3AX27              	100.00%		L0PCG8              	100.00%
Bootstrap support for H3AX27 as seed ortholog is 100%.
Bootstrap support for L0PCG8 as seed ortholog is 100%.

Group of orthologs #13. Best score 1183 bits
Score difference with first non-orthologous sequence - L.chalumnae:760 P.jiroveci:1183

H3AYF8              	100.00%		L0PBE4              	100.00%
Bootstrap support for H3AYF8 as seed ortholog is 100%.
Bootstrap support for L0PBE4 as seed ortholog is 100%.

Group of orthologs #14. Best score 1178 bits
Score difference with first non-orthologous sequence - L.chalumnae:868 P.jiroveci:1178

H3AKY2              	100.00%		L0PEW0              	100.00%
Bootstrap support for H3AKY2 as seed ortholog is 100%.
Bootstrap support for L0PEW0 as seed ortholog is 100%.

Group of orthologs #15. Best score 1177 bits
Score difference with first non-orthologous sequence - L.chalumnae:1177 P.jiroveci:1177

H3A5L4              	100.00%		L0P818              	100.00%
H3ALH9              	40.14%		
Bootstrap support for H3A5L4 as seed ortholog is 100%.
Bootstrap support for L0P818 as seed ortholog is 100%.

Group of orthologs #16. Best score 1171 bits
Score difference with first non-orthologous sequence - L.chalumnae:1171 P.jiroveci:1171

H3AK74              	100.00%		L0PCR2              	100.00%
Bootstrap support for H3AK74 as seed ortholog is 100%.
Bootstrap support for L0PCR2 as seed ortholog is 100%.

Group of orthologs #17. Best score 1139 bits
Score difference with first non-orthologous sequence - L.chalumnae:1139 P.jiroveci:1139

H3AI30              	100.00%		L0PBY6              	100.00%
Bootstrap support for H3AI30 as seed ortholog is 100%.
Bootstrap support for L0PBY6 as seed ortholog is 100%.

Group of orthologs #18. Best score 1103 bits
Score difference with first non-orthologous sequence - L.chalumnae:1103 P.jiroveci:1103

H3B666              	100.00%		L0PDK3              	100.00%
Bootstrap support for H3B666 as seed ortholog is 100%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #19. Best score 1086 bits
Score difference with first non-orthologous sequence - L.chalumnae:402 P.jiroveci:1086

H2ZXQ2              	100.00%		L0PCK0              	100.00%
H3ARY3              	15.38%		L0P7U1              	99.04%
Bootstrap support for H2ZXQ2 as seed ortholog is 100%.
Bootstrap support for L0PCK0 as seed ortholog is 100%.

Group of orthologs #20. Best score 1086 bits
Score difference with first non-orthologous sequence - L.chalumnae:1086 P.jiroveci:1086

H2ZTG6              	100.00%		L0PFL5              	100.00%
Bootstrap support for H2ZTG6 as seed ortholog is 100%.
Bootstrap support for L0PFL5 as seed ortholog is 100%.

Group of orthologs #21. Best score 1074 bits
Score difference with first non-orthologous sequence - L.chalumnae:711 P.jiroveci:799

H3AEE1              	100.00%		L0PG21              	100.00%
H3BAQ9              	71.98%		
Bootstrap support for H3AEE1 as seed ortholog is 100%.
Bootstrap support for L0PG21 as seed ortholog is 100%.

Group of orthologs #22. Best score 1002 bits
Score difference with first non-orthologous sequence - L.chalumnae:1002 P.jiroveci:1002

H3B8U3              	100.00%		L0PEQ1              	100.00%
Bootstrap support for H3B8U3 as seed ortholog is 100%.
Bootstrap support for L0PEQ1 as seed ortholog is 100%.

Group of orthologs #23. Best score 997 bits
Score difference with first non-orthologous sequence - L.chalumnae:997 P.jiroveci:997

H3AKC9              	100.00%		L0P7P6              	100.00%
Bootstrap support for H3AKC9 as seed ortholog is 100%.
Bootstrap support for L0P7P6 as seed ortholog is 100%.

Group of orthologs #24. Best score 973 bits
Score difference with first non-orthologous sequence - L.chalumnae:973 P.jiroveci:973

H3AQ24              	100.00%		L0P9F0              	100.00%
Bootstrap support for H3AQ24 as seed ortholog is 100%.
Bootstrap support for L0P9F0 as seed ortholog is 100%.

Group of orthologs #25. Best score 965 bits
Score difference with first non-orthologous sequence - L.chalumnae:487 P.jiroveci:535

H3AYQ6              	100.00%		L0PB13              	100.00%
Bootstrap support for H3AYQ6 as seed ortholog is 100%.
Bootstrap support for L0PB13 as seed ortholog is 100%.

Group of orthologs #26. Best score 963 bits
Score difference with first non-orthologous sequence - L.chalumnae:579 P.jiroveci:963

H3AM97              	100.00%		L0P9P7              	100.00%
Bootstrap support for H3AM97 as seed ortholog is 100%.
Bootstrap support for L0P9P7 as seed ortholog is 100%.

Group of orthologs #27. Best score 956 bits
Score difference with first non-orthologous sequence - L.chalumnae:405 P.jiroveci:744

H2ZV91              	100.00%		L0PEK6              	100.00%
H3AB35              	70.89%		
H2ZV15              	47.47%		
H3AWU4              	44.30%		
H3B4D4              	37.34%		
Bootstrap support for H2ZV91 as seed ortholog is 99%.
Bootstrap support for L0PEK6 as seed ortholog is 100%.

Group of orthologs #28. Best score 952 bits
Score difference with first non-orthologous sequence - L.chalumnae:527 P.jiroveci:867

H3AYJ2              	100.00%		L0PAG9              	100.00%
H3A6R4              	20.66%		
Bootstrap support for H3AYJ2 as seed ortholog is 100%.
Bootstrap support for L0PAG9 as seed ortholog is 100%.

Group of orthologs #29. Best score 931 bits
Score difference with first non-orthologous sequence - L.chalumnae:931 P.jiroveci:931

H3ALQ7              	100.00%		L0P915              	100.00%
Bootstrap support for H3ALQ7 as seed ortholog is 100%.
Bootstrap support for L0P915 as seed ortholog is 100%.

Group of orthologs #30. Best score 925 bits
Score difference with first non-orthologous sequence - L.chalumnae:925 P.jiroveci:832

H3AKV9              	100.00%		L0P7V0              	100.00%
Bootstrap support for H3AKV9 as seed ortholog is 100%.
Bootstrap support for L0P7V0 as seed ortholog is 100%.

Group of orthologs #31. Best score 924 bits
Score difference with first non-orthologous sequence - L.chalumnae:372 P.jiroveci:924

H3A9S4              	100.00%		L0PDI4              	100.00%
H3ALJ7              	60.70%		
H3AHC8              	57.85%		
H3AVX9              	56.61%		
H3AW23              	14.43%		
H3AY11              	14.16%		
H3A7R4              	11.81%		
H3AWW6              	11.48%		
H3A495              	6.54%		
Bootstrap support for H3A9S4 as seed ortholog is 100%.
Bootstrap support for L0PDI4 as seed ortholog is 100%.

Group of orthologs #32. Best score 913 bits
Score difference with first non-orthologous sequence - L.chalumnae:387 P.jiroveci:379

H3AEU0              	100.00%		L0PFC8              	100.00%
Bootstrap support for H3AEU0 as seed ortholog is 100%.
Bootstrap support for L0PFC8 as seed ortholog is 100%.

Group of orthologs #33. Best score 904 bits
Score difference with first non-orthologous sequence - L.chalumnae:280 P.jiroveci:904

H3AQ38              	100.00%		L0PAW9              	100.00%
H2ZTU7              	55.19%		L0PBZ0              	70.04%
H3B357              	47.54%		
Bootstrap support for H3AQ38 as seed ortholog is 100%.
Bootstrap support for L0PAW9 as seed ortholog is 100%.

Group of orthologs #34. Best score 889 bits
Score difference with first non-orthologous sequence - L.chalumnae:889 P.jiroveci:889

H3AQ97              	100.00%		L0P8F2              	100.00%
                    	       		L0PAK7              	100.00%
Bootstrap support for H3AQ97 as seed ortholog is 100%.
Bootstrap support for L0P8F2 as seed ortholog is 100%.
Bootstrap support for L0PAK7 as seed ortholog is 100%.

Group of orthologs #35. Best score 886 bits
Score difference with first non-orthologous sequence - L.chalumnae:550 P.jiroveci:593

H3BDY4              	100.00%		L0PCW9              	100.00%
H3ANB8              	65.27%		
M3XI19              	60.72%		
H2ZU49              	51.25%		
Bootstrap support for H3BDY4 as seed ortholog is 100%.
Bootstrap support for L0PCW9 as seed ortholog is 100%.

Group of orthologs #36. Best score 886 bits
Score difference with first non-orthologous sequence - L.chalumnae:886 P.jiroveci:886

H3AL55              	100.00%		L0PG12              	100.00%
Bootstrap support for H3AL55 as seed ortholog is 100%.
Bootstrap support for L0PG12 as seed ortholog is 100%.

Group of orthologs #37. Best score 864 bits
Score difference with first non-orthologous sequence - L.chalumnae:864 P.jiroveci:864

M3XKA5              	100.00%		L0P7R6              	100.00%
                    	       		L0PHF8              	81.78%
Bootstrap support for M3XKA5 as seed ortholog is 100%.
Bootstrap support for L0P7R6 as seed ortholog is 100%.

Group of orthologs #38. Best score 850 bits
Score difference with first non-orthologous sequence - L.chalumnae:850 P.jiroveci:850

H3AFR8              	100.00%		L0PEU6              	100.00%
H3B7D9              	64.73%		
Bootstrap support for H3AFR8 as seed ortholog is 100%.
Bootstrap support for L0PEU6 as seed ortholog is 100%.

Group of orthologs #39. Best score 846 bits
Score difference with first non-orthologous sequence - L.chalumnae:846 P.jiroveci:329

H3B5X3              	100.00%		L0PDB3              	100.00%
H2ZWJ3              	6.11%		
Bootstrap support for H3B5X3 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 100%.

Group of orthologs #40. Best score 842 bits
Score difference with first non-orthologous sequence - L.chalumnae:270 P.jiroveci:842

H3AQQ2              	100.00%		L0PGR4              	100.00%
H3BAN4              	12.00%		L0PFQ2              	92.12%
Bootstrap support for H3AQQ2 as seed ortholog is 99%.
Bootstrap support for L0PGR4 as seed ortholog is 100%.

Group of orthologs #41. Best score 838 bits
Score difference with first non-orthologous sequence - L.chalumnae:838 P.jiroveci:838

H3AEC4              	100.00%		L0P9H4              	100.00%
Bootstrap support for H3AEC4 as seed ortholog is 100%.
Bootstrap support for L0P9H4 as seed ortholog is 100%.

Group of orthologs #42. Best score 836 bits
Score difference with first non-orthologous sequence - L.chalumnae:767 P.jiroveci:836

H3BFQ8              	100.00%		L0PFU4              	100.00%
Bootstrap support for H3BFQ8 as seed ortholog is 100%.
Bootstrap support for L0PFU4 as seed ortholog is 100%.

Group of orthologs #43. Best score 835 bits
Score difference with first non-orthologous sequence - L.chalumnae:173 P.jiroveci:639

H3BFV4              	100.00%		L0PFV0              	100.00%
Bootstrap support for H3BFV4 as seed ortholog is 99%.
Bootstrap support for L0PFV0 as seed ortholog is 100%.

Group of orthologs #44. Best score 827 bits
Score difference with first non-orthologous sequence - L.chalumnae:827 P.jiroveci:827

H3AVK7              	100.00%		L0PE96              	100.00%
Bootstrap support for H3AVK7 as seed ortholog is 100%.
Bootstrap support for L0PE96 as seed ortholog is 100%.

Group of orthologs #45. Best score 825 bits
Score difference with first non-orthologous sequence - L.chalumnae:825 P.jiroveci:657

H3BI03              	100.00%		L0PBQ6              	100.00%
Bootstrap support for H3BI03 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 100%.

Group of orthologs #46. Best score 816 bits
Score difference with first non-orthologous sequence - L.chalumnae:479 P.jiroveci:816

H3A782              	100.00%		L0PDQ4              	100.00%
Bootstrap support for H3A782 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #47. Best score 814 bits
Score difference with first non-orthologous sequence - L.chalumnae:529 P.jiroveci:601

H3AJK7              	100.00%		L0PGL4              	100.00%
                    	       		L0P7Q7              	25.39%
Bootstrap support for H3AJK7 as seed ortholog is 100%.
Bootstrap support for L0PGL4 as seed ortholog is 100%.

Group of orthologs #48. Best score 812 bits
Score difference with first non-orthologous sequence - L.chalumnae:812 P.jiroveci:812

H3ADM5              	100.00%		L0PFF9              	100.00%
Bootstrap support for H3ADM5 as seed ortholog is 100%.
Bootstrap support for L0PFF9 as seed ortholog is 100%.

Group of orthologs #49. Best score 805 bits
Score difference with first non-orthologous sequence - L.chalumnae:805 P.jiroveci:805

H3AWH5              	100.00%		L0PBD7              	100.00%
H3AW35              	57.35%		
Bootstrap support for H3AWH5 as seed ortholog is 100%.
Bootstrap support for L0PBD7 as seed ortholog is 100%.

Group of orthologs #50. Best score 802 bits
Score difference with first non-orthologous sequence - L.chalumnae:512 P.jiroveci:802

H3AP88              	100.00%		L0PBL6              	100.00%
Bootstrap support for H3AP88 as seed ortholog is 100%.
Bootstrap support for L0PBL6 as seed ortholog is 100%.

Group of orthologs #51. Best score 800 bits
Score difference with first non-orthologous sequence - L.chalumnae:800 P.jiroveci:800

H3BGE5              	100.00%		L0PC43              	100.00%
                    	       		L0PCW3              	45.68%
Bootstrap support for H3BGE5 as seed ortholog is 100%.
Bootstrap support for L0PC43 as seed ortholog is 100%.

Group of orthologs #52. Best score 798 bits
Score difference with first non-orthologous sequence - L.chalumnae:798 P.jiroveci:798

H3AJG5              	100.00%		L0PH89              	100.00%
Bootstrap support for H3AJG5 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #53. Best score 798 bits
Score difference with first non-orthologous sequence - L.chalumnae:798 P.jiroveci:798

H3B017              	100.00%		L0PDF1              	100.00%
Bootstrap support for H3B017 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #54. Best score 789 bits
Score difference with first non-orthologous sequence - L.chalumnae:718 P.jiroveci:789

H2ZV38              	100.00%		L0P7V1              	100.00%
Bootstrap support for H2ZV38 as seed ortholog is 100%.
Bootstrap support for L0P7V1 as seed ortholog is 100%.

Group of orthologs #55. Best score 789 bits
Score difference with first non-orthologous sequence - L.chalumnae:585 P.jiroveci:789

H3AQW1              	100.00%		L0PC93              	100.00%
Bootstrap support for H3AQW1 as seed ortholog is 100%.
Bootstrap support for L0PC93 as seed ortholog is 100%.

Group of orthologs #56. Best score 787 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:238

H2ZX54              	100.00%		L0PAJ7              	100.00%
Bootstrap support for H2ZX54 as seed ortholog is 87%.
Bootstrap support for L0PAJ7 as seed ortholog is 99%.

Group of orthologs #57. Best score 782 bits
Score difference with first non-orthologous sequence - L.chalumnae:782 P.jiroveci:782

H3ARS4              	100.00%		L0P9W2              	100.00%
Bootstrap support for H3ARS4 as seed ortholog is 100%.
Bootstrap support for L0P9W2 as seed ortholog is 100%.

Group of orthologs #58. Best score 779 bits
Score difference with first non-orthologous sequence - L.chalumnae:779 P.jiroveci:779

H3A6E7              	100.00%		L0PC54              	100.00%
Bootstrap support for H3A6E7 as seed ortholog is 100%.
Bootstrap support for L0PC54 as seed ortholog is 100%.

Group of orthologs #59. Best score 775 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:775

H3A8H4              	100.00%		L0PGU1              	100.00%
H3A979              	41.45%		
H3B961              	30.05%		
Bootstrap support for H3A8H4 as seed ortholog is 80%.
Bootstrap support for L0PGU1 as seed ortholog is 100%.

Group of orthologs #60. Best score 775 bits
Score difference with first non-orthologous sequence - L.chalumnae:775 P.jiroveci:775

H3AKR8              	100.00%		L0P710              	100.00%
Bootstrap support for H3AKR8 as seed ortholog is 100%.
Bootstrap support for L0P710 as seed ortholog is 100%.

Group of orthologs #61. Best score 775 bits
Score difference with first non-orthologous sequence - L.chalumnae:715 P.jiroveci:775

H3AXQ9              	100.00%		L0P9R9              	100.00%
Bootstrap support for H3AXQ9 as seed ortholog is 100%.
Bootstrap support for L0P9R9 as seed ortholog is 100%.

Group of orthologs #62. Best score 772 bits
Score difference with first non-orthologous sequence - L.chalumnae:435 P.jiroveci:772

H3AHV5              	100.00%		L0PB83              	100.00%
Bootstrap support for H3AHV5 as seed ortholog is 100%.
Bootstrap support for L0PB83 as seed ortholog is 100%.

Group of orthologs #63. Best score 769 bits
Score difference with first non-orthologous sequence - L.chalumnae:674 P.jiroveci:769

H3AUZ5              	100.00%		L0PFN4              	100.00%
Bootstrap support for H3AUZ5 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #64. Best score 766 bits
Score difference with first non-orthologous sequence - L.chalumnae:303 P.jiroveci:633

H3AL07              	100.00%		L0PFS2              	100.00%
Bootstrap support for H3AL07 as seed ortholog is 100%.
Bootstrap support for L0PFS2 as seed ortholog is 100%.

Group of orthologs #65. Best score 765 bits
Score difference with first non-orthologous sequence - L.chalumnae:114 P.jiroveci:483

H3B696              	100.00%		L0PBA5              	100.00%
H3A0X9              	23.66%		
Bootstrap support for H3B696 as seed ortholog is 99%.
Bootstrap support for L0PBA5 as seed ortholog is 100%.

Group of orthologs #66. Best score 762 bits
Score difference with first non-orthologous sequence - L.chalumnae:762 P.jiroveci:299

H2ZRK0              	100.00%		L0P833              	100.00%
Bootstrap support for H2ZRK0 as seed ortholog is 100%.
Bootstrap support for L0P833 as seed ortholog is 100%.

Group of orthologs #67. Best score 759 bits
Score difference with first non-orthologous sequence - L.chalumnae:759 P.jiroveci:405

H3ALQ1              	100.00%		L0P9U5              	100.00%
H3BH99              	57.84%		
Bootstrap support for H3ALQ1 as seed ortholog is 100%.
Bootstrap support for L0P9U5 as seed ortholog is 100%.

Group of orthologs #68. Best score 756 bits
Score difference with first non-orthologous sequence - L.chalumnae:756 P.jiroveci:756

H3AS78              	100.00%		L0PA62              	100.00%
Bootstrap support for H3AS78 as seed ortholog is 100%.
Bootstrap support for L0PA62 as seed ortholog is 100%.

Group of orthologs #69. Best score 748 bits
Score difference with first non-orthologous sequence - L.chalumnae:136 P.jiroveci:748

H3A7C7              	100.00%		L0PBR4              	100.00%
H3B4P9              	90.06%		
H3A954              	89.44%		
H3ASR3              	86.96%		
H3AS44              	73.29%		
H3A580              	54.66%		
H3AGW1              	44.10%		
Bootstrap support for H3A7C7 as seed ortholog is 100%.
Bootstrap support for L0PBR4 as seed ortholog is 100%.

Group of orthologs #70. Best score 748 bits
Score difference with first non-orthologous sequence - L.chalumnae:148 P.jiroveci:748

H3AG06              	100.00%		L0PFJ0              	100.00%
Bootstrap support for H3AG06 as seed ortholog is 99%.
Bootstrap support for L0PFJ0 as seed ortholog is 100%.

Group of orthologs #71. Best score 746 bits
Score difference with first non-orthologous sequence - L.chalumnae:26 P.jiroveci:615

H2ZWK6              	100.00%		L0PAC9              	100.00%
M3XHC6              	28.81%		
Bootstrap support for H2ZWK6 as seed ortholog is 71%.
Alternative seed ortholog is H3AEG9 (26 bits away from this cluster)
Bootstrap support for L0PAC9 as seed ortholog is 100%.

Group of orthologs #72. Best score 746 bits
Score difference with first non-orthologous sequence - L.chalumnae:746 P.jiroveci:746

M3XI54              	100.00%		L0PE57              	100.00%
Bootstrap support for M3XI54 as seed ortholog is 100%.
Bootstrap support for L0PE57 as seed ortholog is 100%.

Group of orthologs #73. Best score 740 bits
Score difference with first non-orthologous sequence - L.chalumnae:302 P.jiroveci:740

H3ARK4              	100.00%		L0PC37              	100.00%
Bootstrap support for H3ARK4 as seed ortholog is 99%.
Bootstrap support for L0PC37 as seed ortholog is 100%.

Group of orthologs #74. Best score 739 bits
Score difference with first non-orthologous sequence - L.chalumnae:739 P.jiroveci:739

H3B4J9              	100.00%		L0P7X5              	100.00%
Bootstrap support for H3B4J9 as seed ortholog is 100%.
Bootstrap support for L0P7X5 as seed ortholog is 100%.

Group of orthologs #75. Best score 731 bits
Score difference with first non-orthologous sequence - L.chalumnae:731 P.jiroveci:650

H3AWV3              	100.00%		L0PA93              	100.00%
Bootstrap support for H3AWV3 as seed ortholog is 100%.
Bootstrap support for L0PA93 as seed ortholog is 100%.

Group of orthologs #76. Best score 726 bits
Score difference with first non-orthologous sequence - L.chalumnae:726 P.jiroveci:726

H3A6Q5              	100.00%		L0PAS8              	100.00%
H3BG06              	46.51%		
H3B5P0              	42.06%		
Bootstrap support for H3A6Q5 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #77. Best score 723 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:723

H3A6P4              	100.00%		L0PG61              	100.00%
H3B556              	50.36%		
H3B1E3              	44.17%		
Bootstrap support for H3A6P4 as seed ortholog is 86%.
Bootstrap support for L0PG61 as seed ortholog is 100%.

Group of orthologs #78. Best score 716 bits
Score difference with first non-orthologous sequence - L.chalumnae:716 P.jiroveci:716

H3AWE2              	100.00%		L0PBP8              	100.00%
Bootstrap support for H3AWE2 as seed ortholog is 100%.
Bootstrap support for L0PBP8 as seed ortholog is 100%.

Group of orthologs #79. Best score 715 bits
Score difference with first non-orthologous sequence - L.chalumnae:520 P.jiroveci:715

H2ZYP0              	100.00%		L0PGA5              	100.00%
Bootstrap support for H2ZYP0 as seed ortholog is 100%.
Bootstrap support for L0PGA5 as seed ortholog is 100%.

Group of orthologs #80. Best score 705 bits
Score difference with first non-orthologous sequence - L.chalumnae:322 P.jiroveci:705

H3AHA1              	100.00%		L0P7L0              	100.00%
                    	       		L0PCI7              	39.62%
Bootstrap support for H3AHA1 as seed ortholog is 100%.
Bootstrap support for L0P7L0 as seed ortholog is 100%.

Group of orthologs #81. Best score 695 bits
Score difference with first non-orthologous sequence - L.chalumnae:209 P.jiroveci:695

H3BGD8              	100.00%		L0PB85              	100.00%
H3BD82              	6.61%		
Bootstrap support for H3BGD8 as seed ortholog is 99%.
Bootstrap support for L0PB85 as seed ortholog is 100%.

Group of orthologs #82. Best score 695 bits
Score difference with first non-orthologous sequence - L.chalumnae:695 P.jiroveci:695

M3XIT6              	100.00%		L0PDF3              	100.00%
H3BEI0              	41.55%		
Bootstrap support for M3XIT6 as seed ortholog is 100%.
Bootstrap support for L0PDF3 as seed ortholog is 100%.

Group of orthologs #83. Best score 695 bits
Score difference with first non-orthologous sequence - L.chalumnae:499 P.jiroveci:695

H3B4J0              	100.00%		L0P945              	100.00%
Bootstrap support for H3B4J0 as seed ortholog is 100%.
Bootstrap support for L0P945 as seed ortholog is 100%.

Group of orthologs #84. Best score 688 bits
Score difference with first non-orthologous sequence - L.chalumnae:688 P.jiroveci:688

H3AHD8              	100.00%		L0P773              	100.00%
Bootstrap support for H3AHD8 as seed ortholog is 100%.
Bootstrap support for L0P773 as seed ortholog is 100%.

Group of orthologs #85. Best score 687 bits
Score difference with first non-orthologous sequence - L.chalumnae:90 P.jiroveci:532

H3BBJ9              	100.00%		L0PA91              	100.00%
H2ZUX4              	66.22%		
H3A754              	55.41%		
H3AUT1              	47.30%		
H3AVL6              	45.95%		
H3A626              	41.89%		
H3A440              	36.49%		
Bootstrap support for H3BBJ9 as seed ortholog is 99%.
Bootstrap support for L0PA91 as seed ortholog is 100%.

Group of orthologs #86. Best score 678 bits
Score difference with first non-orthologous sequence - L.chalumnae:549 P.jiroveci:577

H3AWA2              	100.00%		L0PIF0              	100.00%
H3AXA5              	39.77%		
H2ZW02              	12.96%		
H3B7S7              	8.90%		
Bootstrap support for H3AWA2 as seed ortholog is 100%.
Bootstrap support for L0PIF0 as seed ortholog is 100%.

Group of orthologs #87. Best score 678 bits
Score difference with first non-orthologous sequence - L.chalumnae:164 P.jiroveci:178

H3B694              	100.00%		L0P9U6              	100.00%
Bootstrap support for H3B694 as seed ortholog is 99%.
Bootstrap support for L0P9U6 as seed ortholog is 99%.

Group of orthologs #88. Best score 677 bits
Score difference with first non-orthologous sequence - L.chalumnae:677 P.jiroveci:677

H3AV91              	100.00%		L0PBW3              	100.00%
Bootstrap support for H3AV91 as seed ortholog is 100%.
Bootstrap support for L0PBW3 as seed ortholog is 100%.

Group of orthologs #89. Best score 674 bits
Score difference with first non-orthologous sequence - L.chalumnae:408 P.jiroveci:579

H3BBN1              	100.00%		L0PCT0              	100.00%
Bootstrap support for H3BBN1 as seed ortholog is 100%.
Bootstrap support for L0PCT0 as seed ortholog is 100%.

Group of orthologs #90. Best score 673 bits
Score difference with first non-orthologous sequence - L.chalumnae:673 P.jiroveci:673

H3AD90              	100.00%		L0P971              	100.00%
Bootstrap support for H3AD90 as seed ortholog is 100%.
Bootstrap support for L0P971 as seed ortholog is 100%.

Group of orthologs #91. Best score 671 bits
Score difference with first non-orthologous sequence - L.chalumnae:389 P.jiroveci:671

H3BCM2              	100.00%		L0PG19              	100.00%
H3A4H8              	19.81%		
Bootstrap support for H3BCM2 as seed ortholog is 100%.
Bootstrap support for L0PG19 as seed ortholog is 100%.

Group of orthologs #92. Best score 670 bits
Score difference with first non-orthologous sequence - L.chalumnae:670 P.jiroveci:373

H3ACZ9              	100.00%		L0PFG7              	100.00%
H3B9Q4              	27.04%		
Bootstrap support for H3ACZ9 as seed ortholog is 100%.
Bootstrap support for L0PFG7 as seed ortholog is 100%.

Group of orthologs #93. Best score 669 bits
Score difference with first non-orthologous sequence - L.chalumnae:669 P.jiroveci:669

H3A1H0              	100.00%		L0PAV3              	100.00%
Bootstrap support for H3A1H0 as seed ortholog is 100%.
Bootstrap support for L0PAV3 as seed ortholog is 100%.

Group of orthologs #94. Best score 667 bits
Score difference with first non-orthologous sequence - L.chalumnae:667 P.jiroveci:667

H3A579              	100.00%		L0PDK6              	100.00%
Bootstrap support for H3A579 as seed ortholog is 100%.
Bootstrap support for L0PDK6 as seed ortholog is 100%.

Group of orthologs #95. Best score 665 bits
Score difference with first non-orthologous sequence - L.chalumnae:593 P.jiroveci:665

H3AB34              	100.00%		L0PBF3              	100.00%
Bootstrap support for H3AB34 as seed ortholog is 100%.
Bootstrap support for L0PBF3 as seed ortholog is 100%.

Group of orthologs #96. Best score 659 bits
Score difference with first non-orthologous sequence - L.chalumnae:218 P.jiroveci:659

H3A1J5              	100.00%		L0PBN5              	100.00%
Bootstrap support for H3A1J5 as seed ortholog is 99%.
Bootstrap support for L0PBN5 as seed ortholog is 100%.

Group of orthologs #97. Best score 655 bits
Score difference with first non-orthologous sequence - L.chalumnae:474 P.jiroveci:655

H3A857              	100.00%		L0PER6              	100.00%
Bootstrap support for H3A857 as seed ortholog is 100%.
Bootstrap support for L0PER6 as seed ortholog is 100%.

Group of orthologs #98. Best score 654 bits
Score difference with first non-orthologous sequence - L.chalumnae:654 P.jiroveci:367

H2ZSS1              	100.00%		L0PCC4              	100.00%
Bootstrap support for H2ZSS1 as seed ortholog is 100%.
Bootstrap support for L0PCC4 as seed ortholog is 100%.

Group of orthologs #99. Best score 653 bits
Score difference with first non-orthologous sequence - L.chalumnae:653 P.jiroveci:653

H3B705              	100.00%		L0PF68              	100.00%
Bootstrap support for H3B705 as seed ortholog is 100%.
Bootstrap support for L0PF68 as seed ortholog is 100%.

Group of orthologs #100. Best score 649 bits
Score difference with first non-orthologous sequence - L.chalumnae:445 P.jiroveci:649

H3AM02              	100.00%		L0P976              	100.00%
Bootstrap support for H3AM02 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 100%.

Group of orthologs #101. Best score 646 bits
Score difference with first non-orthologous sequence - L.chalumnae:646 P.jiroveci:646

H3AZ82              	100.00%		L0PEQ8              	100.00%
H3BIK9              	42.47%		
H3B2X1              	28.17%		
Bootstrap support for H3AZ82 as seed ortholog is 100%.
Bootstrap support for L0PEQ8 as seed ortholog is 100%.

Group of orthologs #102. Best score 644 bits
Score difference with first non-orthologous sequence - L.chalumnae:433 P.jiroveci:644

H3APY1              	100.00%		L0PG45              	100.00%
Bootstrap support for H3APY1 as seed ortholog is 100%.
Bootstrap support for L0PG45 as seed ortholog is 100%.

Group of orthologs #103. Best score 643 bits
Score difference with first non-orthologous sequence - L.chalumnae:368 P.jiroveci:397

H3A9B9              	100.00%		L0PFW1              	100.00%
H3ADK4              	72.15%		
H3AUN5              	68.88%		
H3BI64              	67.34%		
Bootstrap support for H3A9B9 as seed ortholog is 100%.
Bootstrap support for L0PFW1 as seed ortholog is 100%.

Group of orthologs #104. Best score 641 bits
Score difference with first non-orthologous sequence - L.chalumnae:378 P.jiroveci:641

H3B8M2              	100.00%		L0PBW7              	100.00%
Bootstrap support for H3B8M2 as seed ortholog is 100%.
Bootstrap support for L0PBW7 as seed ortholog is 100%.

Group of orthologs #105. Best score 639 bits
Score difference with first non-orthologous sequence - L.chalumnae:198 P.jiroveci:639

H3BIH2              	100.00%		L0PDJ1              	100.00%
Bootstrap support for H3BIH2 as seed ortholog is 100%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #106. Best score 638 bits
Score difference with first non-orthologous sequence - L.chalumnae:638 P.jiroveci:638

H3B728              	100.00%		L0P7K0              	100.00%
Bootstrap support for H3B728 as seed ortholog is 100%.
Bootstrap support for L0P7K0 as seed ortholog is 100%.

Group of orthologs #107. Best score 638 bits
Score difference with first non-orthologous sequence - L.chalumnae:638 P.jiroveci:638

H3B692              	100.00%		L0PDG3              	100.00%
Bootstrap support for H3B692 as seed ortholog is 100%.
Bootstrap support for L0PDG3 as seed ortholog is 100%.

Group of orthologs #108. Best score 638 bits
Score difference with first non-orthologous sequence - L.chalumnae:511 P.jiroveci:638

H3BHY3              	100.00%		L0PGS4              	100.00%
Bootstrap support for H3BHY3 as seed ortholog is 100%.
Bootstrap support for L0PGS4 as seed ortholog is 100%.

Group of orthologs #109. Best score 635 bits
Score difference with first non-orthologous sequence - L.chalumnae:635 P.jiroveci:635

H3BE66              	100.00%		L0P8L6              	100.00%
Bootstrap support for H3BE66 as seed ortholog is 100%.
Bootstrap support for L0P8L6 as seed ortholog is 100%.

Group of orthologs #110. Best score 629 bits
Score difference with first non-orthologous sequence - L.chalumnae:629 P.jiroveci:629

H2ZWC7              	100.00%		L0P8G2              	100.00%
H3BDM8              	31.45%		
Bootstrap support for H2ZWC7 as seed ortholog is 100%.
Bootstrap support for L0P8G2 as seed ortholog is 100%.

Group of orthologs #111. Best score 629 bits
Score difference with first non-orthologous sequence - L.chalumnae:629 P.jiroveci:629

H3AQ71              	100.00%		L0P7V2              	100.00%
Bootstrap support for H3AQ71 as seed ortholog is 100%.
Bootstrap support for L0P7V2 as seed ortholog is 100%.

Group of orthologs #112. Best score 627 bits
Score difference with first non-orthologous sequence - L.chalumnae:627 P.jiroveci:627

H3ASK0              	100.00%		L0P9S1              	100.00%
Bootstrap support for H3ASK0 as seed ortholog is 100%.
Bootstrap support for L0P9S1 as seed ortholog is 100%.

Group of orthologs #113. Best score 625 bits
Score difference with first non-orthologous sequence - L.chalumnae:625 P.jiroveci:625

H3A3L5              	100.00%		L0PAX4              	100.00%
Bootstrap support for H3A3L5 as seed ortholog is 100%.
Bootstrap support for L0PAX4 as seed ortholog is 100%.

Group of orthologs #114. Best score 625 bits
Score difference with first non-orthologous sequence - L.chalumnae:367 P.jiroveci:625

H3B172              	100.00%		L0PD31              	100.00%
Bootstrap support for H3B172 as seed ortholog is 100%.
Bootstrap support for L0PD31 as seed ortholog is 100%.

Group of orthologs #115. Best score 624 bits
Score difference with first non-orthologous sequence - L.chalumnae:533 P.jiroveci:624

H3B2R7              	100.00%		L0PA41              	100.00%
Bootstrap support for H3B2R7 as seed ortholog is 100%.
Bootstrap support for L0PA41 as seed ortholog is 100%.

Group of orthologs #116. Best score 623 bits
Score difference with first non-orthologous sequence - L.chalumnae:313 P.jiroveci:623

H3A6N0              	100.00%		L0P8C8              	100.00%
H3ASK6              	88.38%		
Bootstrap support for H3A6N0 as seed ortholog is 100%.
Bootstrap support for L0P8C8 as seed ortholog is 100%.

Group of orthologs #117. Best score 621 bits
Score difference with first non-orthologous sequence - L.chalumnae:621 P.jiroveci:621

H2ZW51              	100.00%		L0PCV7              	100.00%
Bootstrap support for H2ZW51 as seed ortholog is 100%.
Bootstrap support for L0PCV7 as seed ortholog is 100%.

Group of orthologs #118. Best score 621 bits
Score difference with first non-orthologous sequence - L.chalumnae:621 P.jiroveci:621

H3AGC7              	100.00%		L0PBV5              	100.00%
Bootstrap support for H3AGC7 as seed ortholog is 100%.
Bootstrap support for L0PBV5 as seed ortholog is 100%.

Group of orthologs #119. Best score 617 bits
Score difference with first non-orthologous sequence - L.chalumnae:466 P.jiroveci:617

H3AUF4              	100.00%		L0PEP7              	100.00%
Bootstrap support for H3AUF4 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #120. Best score 617 bits
Score difference with first non-orthologous sequence - L.chalumnae:379 P.jiroveci:501

H3B659              	100.00%		L0P8E7              	100.00%
Bootstrap support for H3B659 as seed ortholog is 100%.
Bootstrap support for L0P8E7 as seed ortholog is 100%.

Group of orthologs #121. Best score 616 bits
Score difference with first non-orthologous sequence - L.chalumnae:616 P.jiroveci:616

H3ALP2              	100.00%		L0PC79              	100.00%
H3B8J9              	23.11%		
H3BBB9              	20.52%		
Bootstrap support for H3ALP2 as seed ortholog is 100%.
Bootstrap support for L0PC79 as seed ortholog is 100%.

Group of orthologs #122. Best score 614 bits
Score difference with first non-orthologous sequence - L.chalumnae:614 P.jiroveci:614

H3B8Y9              	100.00%		L0P8M6              	100.00%
H3B7N0              	52.20%		
Bootstrap support for H3B8Y9 as seed ortholog is 100%.
Bootstrap support for L0P8M6 as seed ortholog is 100%.

Group of orthologs #123. Best score 614 bits
Score difference with first non-orthologous sequence - L.chalumnae:614 P.jiroveci:614

H3A550              	100.00%		L0PB96              	100.00%
Bootstrap support for H3A550 as seed ortholog is 100%.
Bootstrap support for L0PB96 as seed ortholog is 100%.

Group of orthologs #124. Best score 613 bits
Score difference with first non-orthologous sequence - L.chalumnae:282 P.jiroveci:262

H3AXC2              	100.00%		L0PEK2              	100.00%
Bootstrap support for H3AXC2 as seed ortholog is 99%.
Bootstrap support for L0PEK2 as seed ortholog is 100%.

Group of orthologs #125. Best score 613 bits
Score difference with first non-orthologous sequence - L.chalumnae:239 P.jiroveci:613

H3B5F1              	100.00%		L0PEK9              	100.00%
Bootstrap support for H3B5F1 as seed ortholog is 99%.
Bootstrap support for L0PEK9 as seed ortholog is 100%.

Group of orthologs #126. Best score 612 bits
Score difference with first non-orthologous sequence - L.chalumnae:612 P.jiroveci:612

H3B8A6              	100.00%		L0PD32              	100.00%
                    	       		L0PD26              	93.71%
Bootstrap support for H3B8A6 as seed ortholog is 100%.
Bootstrap support for L0PD32 as seed ortholog is 100%.

Group of orthologs #127. Best score 612 bits
Score difference with first non-orthologous sequence - L.chalumnae:139 P.jiroveci:36

H3AND9              	100.00%		L0P9J9              	100.00%
Bootstrap support for H3AND9 as seed ortholog is 99%.
Bootstrap support for L0P9J9 as seed ortholog is 73%.
Alternative seed ortholog is L0PF72 (36 bits away from this cluster)

Group of orthologs #128. Best score 607 bits
Score difference with first non-orthologous sequence - L.chalumnae:607 P.jiroveci:607

H3B2Y2              	100.00%		L0PC65              	100.00%
Bootstrap support for H3B2Y2 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #129. Best score 607 bits
Score difference with first non-orthologous sequence - L.chalumnae:607 P.jiroveci:607

H3BDS6              	100.00%		L0PDI6              	100.00%
Bootstrap support for H3BDS6 as seed ortholog is 100%.
Bootstrap support for L0PDI6 as seed ortholog is 100%.

Group of orthologs #130. Best score 606 bits
Score difference with first non-orthologous sequence - L.chalumnae:606 P.jiroveci:606

H3B646              	100.00%		L0PDM6              	100.00%
Bootstrap support for H3B646 as seed ortholog is 100%.
Bootstrap support for L0PDM6 as seed ortholog is 100%.

Group of orthologs #131. Best score 605 bits
Score difference with first non-orthologous sequence - L.chalumnae:605 P.jiroveci:605

H3B5D7              	100.00%		L0PBY5              	100.00%
H3A988              	37.68%		
Bootstrap support for H3B5D7 as seed ortholog is 100%.
Bootstrap support for L0PBY5 as seed ortholog is 100%.

Group of orthologs #132. Best score 604 bits
Score difference with first non-orthologous sequence - L.chalumnae:371 P.jiroveci:604

H3AKC7              	100.00%		L0PAR0              	100.00%
Bootstrap support for H3AKC7 as seed ortholog is 100%.
Bootstrap support for L0PAR0 as seed ortholog is 100%.

Group of orthologs #133. Best score 600 bits
Score difference with first non-orthologous sequence - L.chalumnae:317 P.jiroveci:297

H3AHX2              	100.00%		L0P8L4              	100.00%
H3AEX1              	28.57%		
Bootstrap support for H3AHX2 as seed ortholog is 100%.
Bootstrap support for L0P8L4 as seed ortholog is 99%.

Group of orthologs #134. Best score 598 bits
Score difference with first non-orthologous sequence - L.chalumnae:598 P.jiroveci:598

H3A4D6              	100.00%		L0PBN0              	100.00%
Bootstrap support for H3A4D6 as seed ortholog is 100%.
Bootstrap support for L0PBN0 as seed ortholog is 100%.

Group of orthologs #135. Best score 597 bits
Score difference with first non-orthologous sequence - L.chalumnae:359 P.jiroveci:501

H3B5V2              	100.00%		L0P853              	100.00%
H3BC85              	50.84%		L0P8M8              	55.04%
Bootstrap support for H3B5V2 as seed ortholog is 100%.
Bootstrap support for L0P853 as seed ortholog is 100%.

Group of orthologs #136. Best score 596 bits
Score difference with first non-orthologous sequence - L.chalumnae:596 P.jiroveci:596

H3AAK0              	100.00%		L0PBJ1              	100.00%
Bootstrap support for H3AAK0 as seed ortholog is 100%.
Bootstrap support for L0PBJ1 as seed ortholog is 100%.

Group of orthologs #137. Best score 596 bits
Score difference with first non-orthologous sequence - L.chalumnae:596 P.jiroveci:596

H3B206              	100.00%		L0P8W6              	100.00%
Bootstrap support for H3B206 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #138. Best score 591 bits
Score difference with first non-orthologous sequence - L.chalumnae:15 P.jiroveci:208

H3AMP2              	100.00%		L0PBH4              	100.00%
H3AR00              	93.48%		
Bootstrap support for H3AMP2 as seed ortholog is 72%.
Alternative seed ortholog is H3B6N4 (15 bits away from this cluster)
Bootstrap support for L0PBH4 as seed ortholog is 100%.

Group of orthologs #139. Best score 591 bits
Score difference with first non-orthologous sequence - L.chalumnae:591 P.jiroveci:591

H3ATJ7              	100.00%		L0PBV4              	100.00%
Bootstrap support for H3ATJ7 as seed ortholog is 100%.
Bootstrap support for L0PBV4 as seed ortholog is 100%.

Group of orthologs #140. Best score 590 bits
Score difference with first non-orthologous sequence - L.chalumnae:590 P.jiroveci:590

H3AZU8              	100.00%		L0PHB7              	100.00%
Bootstrap support for H3AZU8 as seed ortholog is 100%.
Bootstrap support for L0PHB7 as seed ortholog is 100%.

Group of orthologs #141. Best score 590 bits
Score difference with first non-orthologous sequence - L.chalumnae:331 P.jiroveci:590

H3B5Y6              	100.00%		L0PC44              	100.00%
Bootstrap support for H3B5Y6 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #142. Best score 588 bits
Score difference with first non-orthologous sequence - L.chalumnae:324 P.jiroveci:308

H3B9G0              	100.00%		L0P850              	100.00%
Bootstrap support for H3B9G0 as seed ortholog is 100%.
Bootstrap support for L0P850 as seed ortholog is 100%.

Group of orthologs #143. Best score 587 bits
Score difference with first non-orthologous sequence - L.chalumnae:587 P.jiroveci:587

H3B242              	100.00%		L0PAQ3              	100.00%
H3BGP1              	41.90%		
Bootstrap support for H3B242 as seed ortholog is 100%.
Bootstrap support for L0PAQ3 as seed ortholog is 100%.

Group of orthologs #144. Best score 581 bits
Score difference with first non-orthologous sequence - L.chalumnae:581 P.jiroveci:581

M3XK23              	100.00%		L0PG37              	100.00%
M3XJ18              	44.27%		
H3BDQ2              	7.43%		
Bootstrap support for M3XK23 as seed ortholog is 100%.
Bootstrap support for L0PG37 as seed ortholog is 100%.

Group of orthologs #145. Best score 581 bits
Score difference with first non-orthologous sequence - L.chalumnae:581 P.jiroveci:581

H3AIE0              	100.00%		L0P7N3              	100.00%
H3A423              	21.15%		
Bootstrap support for H3AIE0 as seed ortholog is 100%.
Bootstrap support for L0P7N3 as seed ortholog is 100%.

Group of orthologs #146. Best score 580 bits
Score difference with first non-orthologous sequence - L.chalumnae:345 P.jiroveci:580

H3A672              	100.00%		L0PG07              	100.00%
Bootstrap support for H3A672 as seed ortholog is 100%.
Bootstrap support for L0PG07 as seed ortholog is 100%.

Group of orthologs #147. Best score 578 bits
Score difference with first non-orthologous sequence - L.chalumnae:578 P.jiroveci:578

H3B4Y5              	100.00%		L0PFI9              	100.00%
Bootstrap support for H3B4Y5 as seed ortholog is 100%.
Bootstrap support for L0PFI9 as seed ortholog is 100%.

Group of orthologs #148. Best score 577 bits
Score difference with first non-orthologous sequence - L.chalumnae:577 P.jiroveci:577

H3BFM4              	100.00%		L0P7T0              	100.00%
H3AHP8              	30.41%		
Bootstrap support for H3BFM4 as seed ortholog is 100%.
Bootstrap support for L0P7T0 as seed ortholog is 100%.

Group of orthologs #149. Best score 575 bits
Score difference with first non-orthologous sequence - L.chalumnae:575 P.jiroveci:575

H3BHN2              	100.00%		L0PB97              	100.00%
H3AV76              	51.74%		
Bootstrap support for H3BHN2 as seed ortholog is 100%.
Bootstrap support for L0PB97 as seed ortholog is 100%.

Group of orthologs #150. Best score 575 bits
Score difference with first non-orthologous sequence - L.chalumnae:575 P.jiroveci:575

H2ZWM2              	100.00%		L0PB98              	100.00%
Bootstrap support for H2ZWM2 as seed ortholog is 100%.
Bootstrap support for L0PB98 as seed ortholog is 100%.

Group of orthologs #151. Best score 575 bits
Score difference with first non-orthologous sequence - L.chalumnae:575 P.jiroveci:575

H3BI66              	100.00%		L0PDR3              	100.00%
Bootstrap support for H3BI66 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #152. Best score 573 bits
Score difference with first non-orthologous sequence - L.chalumnae:472 P.jiroveci:494

H3B8B4              	100.00%		L0PCS2              	100.00%
Bootstrap support for H3B8B4 as seed ortholog is 100%.
Bootstrap support for L0PCS2 as seed ortholog is 100%.

Group of orthologs #153. Best score 572 bits
Score difference with first non-orthologous sequence - L.chalumnae:572 P.jiroveci:572

H2ZUB2              	100.00%		L0PEL5              	100.00%
                    	       		L0PGC2              	55.12%
Bootstrap support for H2ZUB2 as seed ortholog is 100%.
Bootstrap support for L0PEL5 as seed ortholog is 100%.

Group of orthologs #154. Best score 572 bits
Score difference with first non-orthologous sequence - L.chalumnae:335 P.jiroveci:482

H2ZRV2              	100.00%		L0PC64              	100.00%
Bootstrap support for H2ZRV2 as seed ortholog is 100%.
Bootstrap support for L0PC64 as seed ortholog is 100%.

Group of orthologs #155. Best score 572 bits
Score difference with first non-orthologous sequence - L.chalumnae:572 P.jiroveci:401

H3AXM1              	100.00%		L0PCD8              	100.00%
Bootstrap support for H3AXM1 as seed ortholog is 100%.
Bootstrap support for L0PCD8 as seed ortholog is 100%.

Group of orthologs #156. Best score 571 bits
Score difference with first non-orthologous sequence - L.chalumnae:419 P.jiroveci:571

H3B2F0              	100.00%		L0PD55              	100.00%
Bootstrap support for H3B2F0 as seed ortholog is 100%.
Bootstrap support for L0PD55 as seed ortholog is 100%.

Group of orthologs #157. Best score 569 bits
Score difference with first non-orthologous sequence - L.chalumnae:569 P.jiroveci:569

H2ZU31              	100.00%		L0P8P8              	100.00%
Bootstrap support for H2ZU31 as seed ortholog is 100%.
Bootstrap support for L0P8P8 as seed ortholog is 100%.

Group of orthologs #158. Best score 568 bits
Score difference with first non-orthologous sequence - L.chalumnae:372 P.jiroveci:568

H3AZF1              	100.00%		L0PGT9              	100.00%
H3AKS0              	35.34%		
Bootstrap support for H3AZF1 as seed ortholog is 100%.
Bootstrap support for L0PGT9 as seed ortholog is 100%.

Group of orthologs #159. Best score 568 bits
Score difference with first non-orthologous sequence - L.chalumnae:568 P.jiroveci:568

H3B1E7              	100.00%		L0PDU2              	100.00%
Bootstrap support for H3B1E7 as seed ortholog is 100%.
Bootstrap support for L0PDU2 as seed ortholog is 100%.

Group of orthologs #160. Best score 567 bits
Score difference with first non-orthologous sequence - L.chalumnae:116 P.jiroveci:567

H3A826              	100.00%		L0PBW1              	100.00%
H3ASY1              	49.20%		
H3ASS5              	35.86%		
Bootstrap support for H3A826 as seed ortholog is 99%.
Bootstrap support for L0PBW1 as seed ortholog is 100%.

Group of orthologs #161. Best score 567 bits
Score difference with first non-orthologous sequence - L.chalumnae:567 P.jiroveci:567

H3BA16              	100.00%		L0PCT1              	100.00%
Bootstrap support for H3BA16 as seed ortholog is 100%.
Bootstrap support for L0PCT1 as seed ortholog is 100%.

Group of orthologs #162. Best score 565 bits
Score difference with first non-orthologous sequence - L.chalumnae:565 P.jiroveci:565

H3AIE7              	100.00%		L0PA85              	100.00%
Bootstrap support for H3AIE7 as seed ortholog is 100%.
Bootstrap support for L0PA85 as seed ortholog is 100%.

Group of orthologs #163. Best score 553 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:553

H3B1M4              	100.00%		L0PA75              	100.00%
Bootstrap support for H3B1M4 as seed ortholog is 99%.
Bootstrap support for L0PA75 as seed ortholog is 100%.

Group of orthologs #164. Best score 550 bits
Score difference with first non-orthologous sequence - L.chalumnae:265 P.jiroveci:147

H3BA28              	100.00%		L0P7D9              	100.00%
H3AMF8              	84.62%		
Bootstrap support for H3BA28 as seed ortholog is 100%.
Bootstrap support for L0P7D9 as seed ortholog is 100%.

Group of orthologs #165. Best score 548 bits
Score difference with first non-orthologous sequence - L.chalumnae:548 P.jiroveci:548

H3AXY9              	100.00%		L0P9D4              	100.00%
H3ABQ3              	32.65%		
Bootstrap support for H3AXY9 as seed ortholog is 100%.
Bootstrap support for L0P9D4 as seed ortholog is 100%.

Group of orthologs #166. Best score 545 bits
Score difference with first non-orthologous sequence - L.chalumnae:272 P.jiroveci:431

H3AGK3              	100.00%		L0PDY0              	100.00%
Bootstrap support for H3AGK3 as seed ortholog is 100%.
Bootstrap support for L0PDY0 as seed ortholog is 100%.

Group of orthologs #167. Best score 544 bits
Score difference with first non-orthologous sequence - L.chalumnae:544 P.jiroveci:544

H3AQ44              	100.00%		L0P9U3              	100.00%
Bootstrap support for H3AQ44 as seed ortholog is 100%.
Bootstrap support for L0P9U3 as seed ortholog is 100%.

Group of orthologs #168. Best score 539 bits
Score difference with first non-orthologous sequence - L.chalumnae:539 P.jiroveci:539

H2ZYQ9              	100.00%		L0PFT7              	100.00%
Bootstrap support for H2ZYQ9 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #169. Best score 539 bits
Score difference with first non-orthologous sequence - L.chalumnae:539 P.jiroveci:539

H3AIW6              	100.00%		L0PF80              	100.00%
Bootstrap support for H3AIW6 as seed ortholog is 100%.
Bootstrap support for L0PF80 as seed ortholog is 100%.

Group of orthologs #170. Best score 534 bits
Score difference with first non-orthologous sequence - L.chalumnae:534 P.jiroveci:534

H3ALM5              	100.00%		L0P6X8              	100.00%
Bootstrap support for H3ALM5 as seed ortholog is 100%.
Bootstrap support for L0P6X8 as seed ortholog is 100%.

Group of orthologs #171. Best score 532 bits
Score difference with first non-orthologous sequence - L.chalumnae:532 P.jiroveci:532

H3A8E3              	100.00%		L0PBR9              	100.00%
H3A389              	57.31%		
Bootstrap support for H3A8E3 as seed ortholog is 100%.
Bootstrap support for L0PBR9 as seed ortholog is 100%.

Group of orthologs #172. Best score 532 bits
Score difference with first non-orthologous sequence - L.chalumnae:532 P.jiroveci:532

M3XKB5              	100.00%		L0PEZ0              	100.00%
Bootstrap support for M3XKB5 as seed ortholog is 100%.
Bootstrap support for L0PEZ0 as seed ortholog is 100%.

Group of orthologs #173. Best score 531 bits
Score difference with first non-orthologous sequence - L.chalumnae:428 P.jiroveci:531

H3AV53              	100.00%		L0P802              	100.00%
H3A5M3              	61.65%		
H3AA31              	43.22%		
Bootstrap support for H3AV53 as seed ortholog is 100%.
Bootstrap support for L0P802 as seed ortholog is 100%.

Group of orthologs #174. Best score 528 bits
Score difference with first non-orthologous sequence - L.chalumnae:333 P.jiroveci:528

H3B762              	100.00%		L0P905              	100.00%
H3B2S8              	49.07%		
M3XJ68              	28.94%		
M3XIT3              	8.11%		
Bootstrap support for H3B762 as seed ortholog is 100%.
Bootstrap support for L0P905 as seed ortholog is 100%.

Group of orthologs #175. Best score 527 bits
Score difference with first non-orthologous sequence - L.chalumnae:482 P.jiroveci:436

H3ANZ0              	100.00%		L0P7R1              	100.00%
Bootstrap support for H3ANZ0 as seed ortholog is 100%.
Bootstrap support for L0P7R1 as seed ortholog is 100%.

Group of orthologs #176. Best score 526 bits
Score difference with first non-orthologous sequence - L.chalumnae:315 P.jiroveci:526

H3A0V7              	100.00%		L0P9I8              	100.00%
H3BCT1              	70.30%		
Bootstrap support for H3A0V7 as seed ortholog is 100%.
Bootstrap support for L0P9I8 as seed ortholog is 100%.

Group of orthologs #177. Best score 524 bits
Score difference with first non-orthologous sequence - L.chalumnae:524 P.jiroveci:312

H3B050              	100.00%		L0PGE8              	100.00%
Bootstrap support for H3B050 as seed ortholog is 100%.
Bootstrap support for L0PGE8 as seed ortholog is 100%.

Group of orthologs #178. Best score 524 bits
Score difference with first non-orthologous sequence - L.chalumnae:269 P.jiroveci:524

H3BBH3              	100.00%		L0PET9              	100.00%
Bootstrap support for H3BBH3 as seed ortholog is 100%.
Bootstrap support for L0PET9 as seed ortholog is 100%.

Group of orthologs #179. Best score 523 bits
Score difference with first non-orthologous sequence - L.chalumnae:288 P.jiroveci:437

H3A1W8              	100.00%		L0P7V6              	100.00%
H3BEF1              	63.48%		
H3A6E9              	62.77%		
Bootstrap support for H3A1W8 as seed ortholog is 100%.
Bootstrap support for L0P7V6 as seed ortholog is 100%.

Group of orthologs #180. Best score 522 bits
Score difference with first non-orthologous sequence - L.chalumnae:295 P.jiroveci:369

H3APY0              	100.00%		L0PBI1              	100.00%
H3BA91              	52.13%		
Bootstrap support for H3APY0 as seed ortholog is 100%.
Bootstrap support for L0PBI1 as seed ortholog is 100%.

Group of orthologs #181. Best score 520 bits
Score difference with first non-orthologous sequence - L.chalumnae:520 P.jiroveci:520

H3BHA3              	100.00%		L0PDD5              	100.00%
Bootstrap support for H3BHA3 as seed ortholog is 100%.
Bootstrap support for L0PDD5 as seed ortholog is 100%.

Group of orthologs #182. Best score 517 bits
Score difference with first non-orthologous sequence - L.chalumnae:275 P.jiroveci:517

H3A6N8              	100.00%		L0PBP3              	100.00%
H3A501              	69.77%		
Bootstrap support for H3A6N8 as seed ortholog is 100%.
Bootstrap support for L0PBP3 as seed ortholog is 100%.

Group of orthologs #183. Best score 514 bits
Score difference with first non-orthologous sequence - L.chalumnae:514 P.jiroveci:514

H3B216              	100.00%		L0PAA4              	100.00%
H3B3N8              	54.90%		
Bootstrap support for H3B216 as seed ortholog is 100%.
Bootstrap support for L0PAA4 as seed ortholog is 100%.

Group of orthologs #184. Best score 514 bits
Score difference with first non-orthologous sequence - L.chalumnae:514 P.jiroveci:514

H3BII8              	100.00%		L0PCX1              	100.00%
H3AND8              	6.38%		
Bootstrap support for H3BII8 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #185. Best score 514 bits
Score difference with first non-orthologous sequence - L.chalumnae:465 P.jiroveci:514

M3XKA9              	100.00%		L0PCA7              	100.00%
Bootstrap support for M3XKA9 as seed ortholog is 100%.
Bootstrap support for L0PCA7 as seed ortholog is 100%.

Group of orthologs #186. Best score 511 bits
Score difference with first non-orthologous sequence - L.chalumnae:329 P.jiroveci:511

H3BHP5              	100.00%		L0P6Y2              	100.00%
Bootstrap support for H3BHP5 as seed ortholog is 100%.
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #187. Best score 510 bits
Score difference with first non-orthologous sequence - L.chalumnae:510 P.jiroveci:348

H3BBS2              	100.00%		L0PEL0              	100.00%
Bootstrap support for H3BBS2 as seed ortholog is 100%.
Bootstrap support for L0PEL0 as seed ortholog is 100%.

Group of orthologs #188. Best score 508 bits
Score difference with first non-orthologous sequence - L.chalumnae:508 P.jiroveci:508

H2ZW85              	100.00%		L0PF20              	100.00%
                    	       		L0P917              	95.90%
Bootstrap support for H2ZW85 as seed ortholog is 100%.
Bootstrap support for L0PF20 as seed ortholog is 100%.

Group of orthologs #189. Best score 507 bits
Score difference with first non-orthologous sequence - L.chalumnae:358 P.jiroveci:507

H3AI71              	100.00%		L0P9G2              	100.00%
Bootstrap support for H3AI71 as seed ortholog is 100%.
Bootstrap support for L0P9G2 as seed ortholog is 100%.

Group of orthologs #190. Best score 503 bits
Score difference with first non-orthologous sequence - L.chalumnae:190 P.jiroveci:503

H3B0G7              	100.00%		L0P8E8              	100.00%
                    	       		L0PEB0              	100.00%
Bootstrap support for H3B0G7 as seed ortholog is 100%.
Bootstrap support for L0P8E8 as seed ortholog is 100%.
Bootstrap support for L0PEB0 as seed ortholog is 100%.

Group of orthologs #191. Best score 503 bits
Score difference with first non-orthologous sequence - L.chalumnae:167 P.jiroveci:503

H3BEA4              	100.00%		L0P9A8              	100.00%
                    	       		L0PHB9              	100.00%
Bootstrap support for H3BEA4 as seed ortholog is 99%.
Bootstrap support for L0P9A8 as seed ortholog is 100%.
Bootstrap support for L0PHB9 as seed ortholog is 100%.

Group of orthologs #192. Best score 503 bits
Score difference with first non-orthologous sequence - L.chalumnae:503 P.jiroveci:503

H3AGD0              	100.00%		L0PBG8              	100.00%
Bootstrap support for H3AGD0 as seed ortholog is 100%.
Bootstrap support for L0PBG8 as seed ortholog is 100%.

Group of orthologs #193. Best score 503 bits
Score difference with first non-orthologous sequence - L.chalumnae:503 P.jiroveci:503

H3ABZ1              	100.00%		L0PFM4              	100.00%
Bootstrap support for H3ABZ1 as seed ortholog is 100%.
Bootstrap support for L0PFM4 as seed ortholog is 100%.

Group of orthologs #194. Best score 501 bits
Score difference with first non-orthologous sequence - L.chalumnae:391 P.jiroveci:501

H2ZUG2              	100.00%		L0PDG5              	100.00%
Bootstrap support for H2ZUG2 as seed ortholog is 100%.
Bootstrap support for L0PDG5 as seed ortholog is 100%.

Group of orthologs #195. Best score 499 bits
Score difference with first non-orthologous sequence - L.chalumnae:499 P.jiroveci:499

H3A2Q5              	100.00%		L0P8F1              	100.00%
H3BDM9              	77.75%		
H3B034              	76.18%		
H3AWC0              	75.13%		
Bootstrap support for H3A2Q5 as seed ortholog is 100%.
Bootstrap support for L0P8F1 as seed ortholog is 100%.

Group of orthologs #196. Best score 499 bits
Score difference with first non-orthologous sequence - L.chalumnae:204 P.jiroveci:499

H3AC80              	100.00%		L0PAS3              	100.00%
H3B6C9              	12.62%		
Bootstrap support for H3AC80 as seed ortholog is 99%.
Bootstrap support for L0PAS3 as seed ortholog is 100%.

Group of orthologs #197. Best score 498 bits
Score difference with first non-orthologous sequence - L.chalumnae:414 P.jiroveci:498

H3A050              	100.00%		L0PB50              	100.00%
Bootstrap support for H3A050 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #198. Best score 497 bits
Score difference with first non-orthologous sequence - L.chalumnae:497 P.jiroveci:497

H3ANL6              	100.00%		L0P8Z9              	100.00%
Bootstrap support for H3ANL6 as seed ortholog is 100%.
Bootstrap support for L0P8Z9 as seed ortholog is 100%.

Group of orthologs #199. Best score 496 bits
Score difference with first non-orthologous sequence - L.chalumnae:310 P.jiroveci:75

H3B2M5              	100.00%		L0PAI4              	100.00%
M3XJQ9              	66.64%		
H3AH77              	64.71%		
Bootstrap support for H3B2M5 as seed ortholog is 100%.
Bootstrap support for L0PAI4 as seed ortholog is 91%.

Group of orthologs #200. Best score 495 bits
Score difference with first non-orthologous sequence - L.chalumnae:179 P.jiroveci:495

H3AHF6              	100.00%		L0P890              	100.00%
H3B1Z2              	28.53%		
Bootstrap support for H3AHF6 as seed ortholog is 99%.
Bootstrap support for L0P890 as seed ortholog is 100%.

Group of orthologs #201. Best score 493 bits
Score difference with first non-orthologous sequence - L.chalumnae:493 P.jiroveci:315

H3BEP0              	100.00%		L0PFN9              	100.00%
Bootstrap support for H3BEP0 as seed ortholog is 100%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #202. Best score 492 bits
Score difference with first non-orthologous sequence - L.chalumnae:425 P.jiroveci:492

H3AYF4              	100.00%		L0P992              	100.00%
H3AWK9              	44.33%		
H3B8M1              	32.76%		
Bootstrap support for H3AYF4 as seed ortholog is 100%.
Bootstrap support for L0P992 as seed ortholog is 100%.

Group of orthologs #203. Best score 492 bits
Score difference with first non-orthologous sequence - L.chalumnae:492 P.jiroveci:492

H2ZXA7              	100.00%		L0PB35              	100.00%
Bootstrap support for H2ZXA7 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 100%.

Group of orthologs #204. Best score 491 bits
Score difference with first non-orthologous sequence - L.chalumnae:167 P.jiroveci:132

H3AN71              	100.00%		L0PCK5              	100.00%
Bootstrap support for H3AN71 as seed ortholog is 100%.
Bootstrap support for L0PCK5 as seed ortholog is 99%.

Group of orthologs #205. Best score 490 bits
Score difference with first non-orthologous sequence - L.chalumnae:490 P.jiroveci:490

H3B7X4              	100.00%		L0P958              	100.00%
Bootstrap support for H3B7X4 as seed ortholog is 100%.
Bootstrap support for L0P958 as seed ortholog is 100%.

Group of orthologs #206. Best score 488 bits
Score difference with first non-orthologous sequence - L.chalumnae:308 P.jiroveci:488

H3A2P0              	100.00%		L0P9V7              	100.00%
H3A4W2              	40.01%		
H3ATB3              	20.36%		
Bootstrap support for H3A2P0 as seed ortholog is 100%.
Bootstrap support for L0P9V7 as seed ortholog is 100%.

Group of orthologs #207. Best score 488 bits
Score difference with first non-orthologous sequence - L.chalumnae:488 P.jiroveci:488

H3AL35              	100.00%		L0PAN9              	100.00%
                    	       		L0PID8              	83.32%
Bootstrap support for H3AL35 as seed ortholog is 100%.
Bootstrap support for L0PAN9 as seed ortholog is 100%.

Group of orthologs #208. Best score 487 bits
Score difference with first non-orthologous sequence - L.chalumnae:487 P.jiroveci:487

H3AQ45              	100.00%		L0PC09              	100.00%
Bootstrap support for H3AQ45 as seed ortholog is 100%.
Bootstrap support for L0PC09 as seed ortholog is 100%.

Group of orthologs #209. Best score 486 bits
Score difference with first non-orthologous sequence - L.chalumnae:339 P.jiroveci:400

H3BBQ3              	100.00%		L0PG55              	100.00%
H3B0F5              	52.15%		
H3AYA8              	26.56%		
Bootstrap support for H3BBQ3 as seed ortholog is 100%.
Bootstrap support for L0PG55 as seed ortholog is 100%.

Group of orthologs #210. Best score 484 bits
Score difference with first non-orthologous sequence - L.chalumnae:484 P.jiroveci:484

H3A0G7              	100.00%		L0PA45              	100.00%
Bootstrap support for H3A0G7 as seed ortholog is 100%.
Bootstrap support for L0PA45 as seed ortholog is 100%.

Group of orthologs #211. Best score 484 bits
Score difference with first non-orthologous sequence - L.chalumnae:484 P.jiroveci:484

H3AIE9              	100.00%		L0PB12              	100.00%
Bootstrap support for H3AIE9 as seed ortholog is 100%.
Bootstrap support for L0PB12 as seed ortholog is 100%.

Group of orthologs #212. Best score 483 bits
Score difference with first non-orthologous sequence - L.chalumnae:483 P.jiroveci:483

H3ACG7              	100.00%		L0PFZ9              	100.00%
H3AJT7              	29.67%		
Bootstrap support for H3ACG7 as seed ortholog is 100%.
Bootstrap support for L0PFZ9 as seed ortholog is 100%.

Group of orthologs #213. Best score 483 bits
Score difference with first non-orthologous sequence - L.chalumnae:483 P.jiroveci:483

H3A1Q8              	100.00%		L0PAP1              	100.00%
Bootstrap support for H3A1Q8 as seed ortholog is 100%.
Bootstrap support for L0PAP1 as seed ortholog is 100%.

Group of orthologs #214. Best score 483 bits
Score difference with first non-orthologous sequence - L.chalumnae:483 P.jiroveci:483

H3B0T2              	100.00%		L0PEA0              	100.00%
Bootstrap support for H3B0T2 as seed ortholog is 100%.
Bootstrap support for L0PEA0 as seed ortholog is 100%.

Group of orthologs #215. Best score 482 bits
Score difference with first non-orthologous sequence - L.chalumnae:482 P.jiroveci:482

H2ZYP6              	100.00%		L0PAP2              	100.00%
Bootstrap support for H2ZYP6 as seed ortholog is 100%.
Bootstrap support for L0PAP2 as seed ortholog is 100%.

Group of orthologs #216. Best score 480 bits
Score difference with first non-orthologous sequence - L.chalumnae:276 P.jiroveci:480

H3AB98              	100.00%		L0PE41              	100.00%
Bootstrap support for H3AB98 as seed ortholog is 99%.
Bootstrap support for L0PE41 as seed ortholog is 100%.

Group of orthologs #217. Best score 478 bits
Score difference with first non-orthologous sequence - L.chalumnae:294 P.jiroveci:264

H3A5W6              	100.00%		L0PF08              	100.00%
H3A6A5              	43.75%		
H3AQR5              	36.98%		
Bootstrap support for H3A5W6 as seed ortholog is 100%.
Bootstrap support for L0PF08 as seed ortholog is 100%.

Group of orthologs #218. Best score 478 bits
Score difference with first non-orthologous sequence - L.chalumnae:478 P.jiroveci:478

H3ATV4              	100.00%		L0PGB8              	100.00%
Bootstrap support for H3ATV4 as seed ortholog is 100%.
Bootstrap support for L0PGB8 as seed ortholog is 100%.

Group of orthologs #219. Best score 477 bits
Score difference with first non-orthologous sequence - L.chalumnae:388 P.jiroveci:477

H3B2B2              	100.00%		L0PAC4              	100.00%
                    	       		L0P871              	98.20%
Bootstrap support for H3B2B2 as seed ortholog is 100%.
Bootstrap support for L0PAC4 as seed ortholog is 100%.

Group of orthologs #220. Best score 475 bits
Score difference with first non-orthologous sequence - L.chalumnae:475 P.jiroveci:475

H3ALT2              	100.00%		L0PDC9              	100.00%
Bootstrap support for H3ALT2 as seed ortholog is 100%.
Bootstrap support for L0PDC9 as seed ortholog is 100%.

Group of orthologs #221. Best score 473 bits
Score difference with first non-orthologous sequence - L.chalumnae:318 P.jiroveci:387

H3B6Y3              	100.00%		L0PC98              	100.00%
Bootstrap support for H3B6Y3 as seed ortholog is 100%.
Bootstrap support for L0PC98 as seed ortholog is 100%.

Group of orthologs #222. Best score 472 bits
Score difference with first non-orthologous sequence - L.chalumnae:373 P.jiroveci:472

H3BBQ4              	100.00%		L0PCS3              	100.00%
Bootstrap support for H3BBQ4 as seed ortholog is 100%.
Bootstrap support for L0PCS3 as seed ortholog is 100%.

Group of orthologs #223. Best score 471 bits
Score difference with first non-orthologous sequence - L.chalumnae:214 P.jiroveci:344

H3AVR0              	100.00%		L0PC38              	100.00%
H2ZZN2              	56.33%		
Bootstrap support for H3AVR0 as seed ortholog is 100%.
Bootstrap support for L0PC38 as seed ortholog is 100%.

Group of orthologs #224. Best score 470 bits
Score difference with first non-orthologous sequence - L.chalumnae:183 P.jiroveci:255

H3ARG2              	100.00%		L0PB67              	100.00%
H3AFV9              	64.52%		
Bootstrap support for H3ARG2 as seed ortholog is 99%.
Bootstrap support for L0PB67 as seed ortholog is 100%.

Group of orthologs #225. Best score 470 bits
Score difference with first non-orthologous sequence - L.chalumnae:470 P.jiroveci:470

H3AQC9              	100.00%		L0PDM3              	100.00%
Bootstrap support for H3AQC9 as seed ortholog is 100%.
Bootstrap support for L0PDM3 as seed ortholog is 100%.

Group of orthologs #226. Best score 467 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:149

H3B943              	100.00%		L0PAW8              	100.00%
H2ZVT3              	7.74%		
H3ASU0              	6.26%		
Bootstrap support for H3B943 as seed ortholog is 98%.
Bootstrap support for L0PAW8 as seed ortholog is 99%.

Group of orthologs #227. Best score 467 bits
Score difference with first non-orthologous sequence - L.chalumnae:340 P.jiroveci:467

H3BFD1              	100.00%		L0P8N1              	100.00%
Bootstrap support for H3BFD1 as seed ortholog is 100%.
Bootstrap support for L0P8N1 as seed ortholog is 100%.

Group of orthologs #228. Best score 465 bits
Score difference with first non-orthologous sequence - L.chalumnae:403 P.jiroveci:465

H3B9W8              	100.00%		L0P9C8              	100.00%
H3AA09              	6.48%		
Bootstrap support for H3B9W8 as seed ortholog is 100%.
Bootstrap support for L0P9C8 as seed ortholog is 100%.

Group of orthologs #229. Best score 464 bits
Score difference with first non-orthologous sequence - L.chalumnae:204 P.jiroveci:346

H3A2F9              	100.00%		L0PE30              	100.00%
H3A126              	28.85%		
Bootstrap support for H3A2F9 as seed ortholog is 100%.
Bootstrap support for L0PE30 as seed ortholog is 100%.

Group of orthologs #230. Best score 464 bits
Score difference with first non-orthologous sequence - L.chalumnae:464 P.jiroveci:255

H3A9R5              	100.00%		L0PED9              	100.00%
Bootstrap support for H3A9R5 as seed ortholog is 100%.
Bootstrap support for L0PED9 as seed ortholog is 99%.

Group of orthologs #231. Best score 464 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:464

H3AXY1              	100.00%		L0PFR4              	100.00%
Bootstrap support for H3AXY1 as seed ortholog is 43%.
Alternative seed ortholog is H3ARW8 (71 bits away from this cluster)
Bootstrap support for L0PFR4 as seed ortholog is 100%.

Group of orthologs #232. Best score 462 bits
Score difference with first non-orthologous sequence - L.chalumnae:462 P.jiroveci:462

H3AFD7              	100.00%		L0PES7              	100.00%
Bootstrap support for H3AFD7 as seed ortholog is 100%.
Bootstrap support for L0PES7 as seed ortholog is 100%.

Group of orthologs #233. Best score 461 bits
Score difference with first non-orthologous sequence - L.chalumnae:298 P.jiroveci:321

H3BHU5              	100.00%		L0PDA0              	100.00%
Bootstrap support for H3BHU5 as seed ortholog is 100%.
Bootstrap support for L0PDA0 as seed ortholog is 100%.

Group of orthologs #234. Best score 458 bits
Score difference with first non-orthologous sequence - L.chalumnae:458 P.jiroveci:458

H3AJ55              	100.00%		L0PF23              	100.00%
H3AYY8              	6.40%		
Bootstrap support for H3AJ55 as seed ortholog is 100%.
Bootstrap support for L0PF23 as seed ortholog is 100%.

Group of orthologs #235. Best score 458 bits
Score difference with first non-orthologous sequence - L.chalumnae:245 P.jiroveci:458

H3BA48              	100.00%		L0P7B5              	100.00%
Bootstrap support for H3BA48 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #236. Best score 456 bits
Score difference with first non-orthologous sequence - L.chalumnae:456 P.jiroveci:456

H3A5T5              	100.00%		L0PBT8              	100.00%
Bootstrap support for H3A5T5 as seed ortholog is 100%.
Bootstrap support for L0PBT8 as seed ortholog is 100%.

Group of orthologs #237. Best score 456 bits
Score difference with first non-orthologous sequence - L.chalumnae:456 P.jiroveci:456

H3BC39              	100.00%		L0P9I4              	100.00%
Bootstrap support for H3BC39 as seed ortholog is 100%.
Bootstrap support for L0P9I4 as seed ortholog is 100%.

Group of orthologs #238. Best score 455 bits
Score difference with first non-orthologous sequence - L.chalumnae:455 P.jiroveci:455

H2ZTY7              	100.00%		L0P6R7              	100.00%
Bootstrap support for H2ZTY7 as seed ortholog is 100%.
Bootstrap support for L0P6R7 as seed ortholog is 100%.

Group of orthologs #239. Best score 455 bits
Score difference with first non-orthologous sequence - L.chalumnae:292 P.jiroveci:355

H3A660              	100.00%		L0P8C2              	100.00%
Bootstrap support for H3A660 as seed ortholog is 100%.
Bootstrap support for L0P8C2 as seed ortholog is 100%.

Group of orthologs #240. Best score 454 bits
Score difference with first non-orthologous sequence - L.chalumnae:184 P.jiroveci:454

H3AKB8              	100.00%		L0P8R6              	100.00%
Bootstrap support for H3AKB8 as seed ortholog is 99%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #241. Best score 454 bits
Score difference with first non-orthologous sequence - L.chalumnae:454 P.jiroveci:454

H3AH00              	100.00%		L0PG96              	100.00%
Bootstrap support for H3AH00 as seed ortholog is 100%.
Bootstrap support for L0PG96 as seed ortholog is 100%.

Group of orthologs #242. Best score 451 bits
Score difference with first non-orthologous sequence - L.chalumnae:451 P.jiroveci:451

H3A922              	100.00%		L0PBN1              	100.00%
Bootstrap support for H3A922 as seed ortholog is 100%.
Bootstrap support for L0PBN1 as seed ortholog is 100%.

Group of orthologs #243. Best score 451 bits
Score difference with first non-orthologous sequence - L.chalumnae:451 P.jiroveci:451

H3B878              	100.00%		L0PAL6              	100.00%
Bootstrap support for H3B878 as seed ortholog is 100%.
Bootstrap support for L0PAL6 as seed ortholog is 100%.

Group of orthologs #244. Best score 450 bits
Score difference with first non-orthologous sequence - L.chalumnae:450 P.jiroveci:450

H3AI66              	100.00%		L0PF49              	100.00%
Bootstrap support for H3AI66 as seed ortholog is 100%.
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #245. Best score 449 bits
Score difference with first non-orthologous sequence - L.chalumnae:449 P.jiroveci:449

H3BI07              	100.00%		L0P7P1              	100.00%
Bootstrap support for H3BI07 as seed ortholog is 100%.
Bootstrap support for L0P7P1 as seed ortholog is 100%.

Group of orthologs #246. Best score 448 bits
Score difference with first non-orthologous sequence - L.chalumnae:448 P.jiroveci:448

H3BCC7              	100.00%		L0P7D2              	100.00%
H3BCM1              	22.10%		
Bootstrap support for H3BCC7 as seed ortholog is 100%.
Bootstrap support for L0P7D2 as seed ortholog is 100%.

Group of orthologs #247. Best score 447 bits
Score difference with first non-orthologous sequence - L.chalumnae:360 P.jiroveci:447

H3AT29              	100.00%		L0PBU6              	100.00%
Bootstrap support for H3AT29 as seed ortholog is 100%.
Bootstrap support for L0PBU6 as seed ortholog is 100%.

Group of orthologs #248. Best score 447 bits
Score difference with first non-orthologous sequence - L.chalumnae:338 P.jiroveci:447

H3BBZ5              	100.00%		L0PDH7              	100.00%
Bootstrap support for H3BBZ5 as seed ortholog is 100%.
Bootstrap support for L0PDH7 as seed ortholog is 100%.

Group of orthologs #249. Best score 445 bits
Score difference with first non-orthologous sequence - L.chalumnae:172 P.jiroveci:69

H3BFY5              	100.00%		L0PFS3              	100.00%
Bootstrap support for H3BFY5 as seed ortholog is 100%.
Bootstrap support for L0PFS3 as seed ortholog is 98%.

Group of orthologs #250. Best score 442 bits
Score difference with first non-orthologous sequence - L.chalumnae:174 P.jiroveci:442

H3BD04              	100.00%		L0PCE9              	100.00%
Bootstrap support for H3BD04 as seed ortholog is 99%.
Bootstrap support for L0PCE9 as seed ortholog is 100%.

Group of orthologs #251. Best score 440 bits
Score difference with first non-orthologous sequence - L.chalumnae:274 P.jiroveci:345

H3AXH7              	100.00%		L0PAL3              	100.00%
H3AGW0              	24.95%		
H3B9K5              	22.90%		
Bootstrap support for H3AXH7 as seed ortholog is 100%.
Bootstrap support for L0PAL3 as seed ortholog is 100%.

Group of orthologs #252. Best score 439 bits
Score difference with first non-orthologous sequence - L.chalumnae:246 P.jiroveci:328

H3AEJ1              	100.00%		L0PHE4              	100.00%
H2ZZU9              	80.95%		
Bootstrap support for H3AEJ1 as seed ortholog is 100%.
Bootstrap support for L0PHE4 as seed ortholog is 100%.

Group of orthologs #253. Best score 439 bits
Score difference with first non-orthologous sequence - L.chalumnae:333 P.jiroveci:439

H3ANX5              	100.00%		L0PFE7              	100.00%
Bootstrap support for H3ANX5 as seed ortholog is 100%.
Bootstrap support for L0PFE7 as seed ortholog is 100%.

Group of orthologs #254. Best score 438 bits
Score difference with first non-orthologous sequence - L.chalumnae:285 P.jiroveci:438

H3AKH6              	100.00%		L0P6W8              	100.00%
                    	       		L0PH46              	100.00%
Bootstrap support for H3AKH6 as seed ortholog is 100%.
Bootstrap support for L0P6W8 as seed ortholog is 100%.
Bootstrap support for L0PH46 as seed ortholog is 100%.

Group of orthologs #255. Best score 438 bits
Score difference with first non-orthologous sequence - L.chalumnae:226 P.jiroveci:320

H3AU41              	100.00%		L0PEM1              	100.00%
Bootstrap support for H3AU41 as seed ortholog is 100%.
Bootstrap support for L0PEM1 as seed ortholog is 100%.

Group of orthologs #256. Best score 436 bits
Score difference with first non-orthologous sequence - L.chalumnae:319 P.jiroveci:436

H3A9P8              	100.00%		L0PGH3              	100.00%
H3AWQ6              	15.58%		
Bootstrap support for H3A9P8 as seed ortholog is 100%.
Bootstrap support for L0PGH3 as seed ortholog is 100%.

Group of orthologs #257. Best score 436 bits
Score difference with first non-orthologous sequence - L.chalumnae:83 P.jiroveci:292

H3B8R3              	100.00%		L0PGV4              	100.00%
H3AQ74              	82.50%		
Bootstrap support for H3B8R3 as seed ortholog is 99%.
Bootstrap support for L0PGV4 as seed ortholog is 100%.

Group of orthologs #258. Best score 436 bits
Score difference with first non-orthologous sequence - L.chalumnae:196 P.jiroveci:436

H3A8U4              	100.00%		L0PG32              	100.00%
Bootstrap support for H3A8U4 as seed ortholog is 99%.
Bootstrap support for L0PG32 as seed ortholog is 100%.

Group of orthologs #259. Best score 433 bits
Score difference with first non-orthologous sequence - L.chalumnae:433 P.jiroveci:433

H3AZP1              	100.00%		L0PBV8              	100.00%
Bootstrap support for H3AZP1 as seed ortholog is 100%.
Bootstrap support for L0PBV8 as seed ortholog is 100%.

Group of orthologs #260. Best score 431 bits
Score difference with first non-orthologous sequence - L.chalumnae:431 P.jiroveci:431

H3AJK3              	100.00%		L0PCQ7              	100.00%
Bootstrap support for H3AJK3 as seed ortholog is 100%.
Bootstrap support for L0PCQ7 as seed ortholog is 100%.

Group of orthologs #261. Best score 431 bits
Score difference with first non-orthologous sequence - L.chalumnae:431 P.jiroveci:431

H3B715              	100.00%		L0PAH2              	100.00%
Bootstrap support for H3B715 as seed ortholog is 100%.
Bootstrap support for L0PAH2 as seed ortholog is 100%.

Group of orthologs #262. Best score 429 bits
Score difference with first non-orthologous sequence - L.chalumnae:324 P.jiroveci:429

H2ZWN8              	100.00%		L0PI36              	100.00%
Bootstrap support for H2ZWN8 as seed ortholog is 100%.
Bootstrap support for L0PI36 as seed ortholog is 100%.

Group of orthologs #263. Best score 428 bits
Score difference with first non-orthologous sequence - L.chalumnae:335 P.jiroveci:428

H3A5R2              	100.00%		L0PF52              	100.00%
H3AD44              	67.39%		
Bootstrap support for H3A5R2 as seed ortholog is 100%.
Bootstrap support for L0PF52 as seed ortholog is 100%.

Group of orthologs #264. Best score 427 bits
Score difference with first non-orthologous sequence - L.chalumnae:427 P.jiroveci:427

H2ZYA8              	100.00%		L0PFY1              	100.00%
H3BDJ1              	35.80%		
H3AR52              	27.98%		
Bootstrap support for H2ZYA8 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #265. Best score 425 bits
Score difference with first non-orthologous sequence - L.chalumnae:425 P.jiroveci:425

H3A0U7              	100.00%		L0P6T8              	100.00%
H3AEK6              	58.68%		
H3AGM4              	54.68%		
Bootstrap support for H3A0U7 as seed ortholog is 100%.
Bootstrap support for L0P6T8 as seed ortholog is 100%.

Group of orthologs #266. Best score 425 bits
Score difference with first non-orthologous sequence - L.chalumnae:425 P.jiroveci:425

H2ZVD5              	100.00%		L0PB32              	100.00%
H3ATL4              	57.50%		
Bootstrap support for H2ZVD5 as seed ortholog is 100%.
Bootstrap support for L0PB32 as seed ortholog is 100%.

Group of orthologs #267. Best score 425 bits
Score difference with first non-orthologous sequence - L.chalumnae:425 P.jiroveci:425

H3ATJ8              	100.00%		L0PEE3              	100.00%
H3AAG4              	58.83%		
Bootstrap support for H3ATJ8 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #268. Best score 425 bits
Score difference with first non-orthologous sequence - L.chalumnae:425 P.jiroveci:425

H3BEP4              	100.00%		L0PGU0              	100.00%
Bootstrap support for H3BEP4 as seed ortholog is 100%.
Bootstrap support for L0PGU0 as seed ortholog is 100%.

Group of orthologs #269. Best score 423 bits
Score difference with first non-orthologous sequence - L.chalumnae:423 P.jiroveci:423

H3ADS0              	100.00%		L0PC82              	100.00%
Bootstrap support for H3ADS0 as seed ortholog is 100%.
Bootstrap support for L0PC82 as seed ortholog is 100%.

Group of orthologs #270. Best score 422 bits
Score difference with first non-orthologous sequence - L.chalumnae:422 P.jiroveci:422

H2ZXG4              	100.00%		L0PEX5              	100.00%
Bootstrap support for H2ZXG4 as seed ortholog is 100%.
Bootstrap support for L0PEX5 as seed ortholog is 100%.

Group of orthologs #271. Best score 422 bits
Score difference with first non-orthologous sequence - L.chalumnae:422 P.jiroveci:422

H3AYH7              	100.00%		L0P7S7              	100.00%
Bootstrap support for H3AYH7 as seed ortholog is 100%.
Bootstrap support for L0P7S7 as seed ortholog is 100%.

Group of orthologs #272. Best score 421 bits
Score difference with first non-orthologous sequence - L.chalumnae:421 P.jiroveci:421

H3A134              	100.00%		L0PE52              	100.00%
                    	       		L0PIN5              	48.70%
Bootstrap support for H3A134 as seed ortholog is 100%.
Bootstrap support for L0PE52 as seed ortholog is 100%.

Group of orthologs #273. Best score 421 bits
Score difference with first non-orthologous sequence - L.chalumnae:421 P.jiroveci:421

H3AF45              	100.00%		L0PBL0              	100.00%
H3AAL4              	40.78%		
Bootstrap support for H3AF45 as seed ortholog is 100%.
Bootstrap support for L0PBL0 as seed ortholog is 100%.

Group of orthologs #274. Best score 421 bits
Score difference with first non-orthologous sequence - L.chalumnae:421 P.jiroveci:421

H3A4P7              	100.00%		L0PG82              	100.00%
Bootstrap support for H3A4P7 as seed ortholog is 100%.
Bootstrap support for L0PG82 as seed ortholog is 100%.

Group of orthologs #275. Best score 421 bits
Score difference with first non-orthologous sequence - L.chalumnae:421 P.jiroveci:421

H3AUY2              	100.00%		L0PCT5              	100.00%
Bootstrap support for H3AUY2 as seed ortholog is 100%.
Bootstrap support for L0PCT5 as seed ortholog is 100%.

Group of orthologs #276. Best score 419 bits
Score difference with first non-orthologous sequence - L.chalumnae:28 P.jiroveci:419

H3AZP8              	100.00%		L0P9H5              	100.00%
H3BA09              	35.28%		L0P8S4              	54.48%
H3BG46              	9.51%		
H3A0J1              	5.05%		
Bootstrap support for H3AZP8 as seed ortholog is 86%.
Bootstrap support for L0P9H5 as seed ortholog is 100%.

Group of orthologs #277. Best score 418 bits
Score difference with first non-orthologous sequence - L.chalumnae:418 P.jiroveci:418

H3ASP8              	100.00%		L0P9J7              	100.00%
Bootstrap support for H3ASP8 as seed ortholog is 100%.
Bootstrap support for L0P9J7 as seed ortholog is 100%.

Group of orthologs #278. Best score 418 bits
Score difference with first non-orthologous sequence - L.chalumnae:418 P.jiroveci:418

H3AZJ0              	100.00%		L0PBE9              	100.00%
Bootstrap support for H3AZJ0 as seed ortholog is 100%.
Bootstrap support for L0PBE9 as seed ortholog is 100%.

Group of orthologs #279. Best score 416 bits
Score difference with first non-orthologous sequence - L.chalumnae:145 P.jiroveci:232

H3A5L2              	100.00%		L0P6V9              	100.00%
H2ZXJ6              	31.13%		
Bootstrap support for H3A5L2 as seed ortholog is 100%.
Bootstrap support for L0P6V9 as seed ortholog is 100%.

Group of orthologs #280. Best score 415 bits
Score difference with first non-orthologous sequence - L.chalumnae:415 P.jiroveci:415

H2ZUS7              	100.00%		L0PEE4              	100.00%
H3AQY8              	56.07%		
Bootstrap support for H2ZUS7 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.

Group of orthologs #281. Best score 415 bits
Score difference with first non-orthologous sequence - L.chalumnae:334 P.jiroveci:415

H3A1Z2              	100.00%		L0PG05              	100.00%
Bootstrap support for H3A1Z2 as seed ortholog is 100%.
Bootstrap support for L0PG05 as seed ortholog is 100%.

Group of orthologs #282. Best score 415 bits
Score difference with first non-orthologous sequence - L.chalumnae:415 P.jiroveci:415

H3BDR2              	100.00%		L0P8X3              	100.00%
Bootstrap support for H3BDR2 as seed ortholog is 100%.
Bootstrap support for L0P8X3 as seed ortholog is 100%.

Group of orthologs #283. Best score 414 bits
Score difference with first non-orthologous sequence - L.chalumnae:414 P.jiroveci:355

H3BB48              	100.00%		L0P7M4              	100.00%
H3A405              	49.17%		L0PH62              	49.16%
Bootstrap support for H3BB48 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #284. Best score 414 bits
Score difference with first non-orthologous sequence - L.chalumnae:414 P.jiroveci:414

H3BA52              	100.00%		L0PBM4              	100.00%
H2ZVE2              	33.22%		
Bootstrap support for H3BA52 as seed ortholog is 100%.
Bootstrap support for L0PBM4 as seed ortholog is 100%.

Group of orthologs #285. Best score 413 bits
Score difference with first non-orthologous sequence - L.chalumnae:134 P.jiroveci:413

H2ZZ69              	100.00%		L0PFJ5              	100.00%
Bootstrap support for H2ZZ69 as seed ortholog is 99%.
Bootstrap support for L0PFJ5 as seed ortholog is 100%.

Group of orthologs #286. Best score 413 bits
Score difference with first non-orthologous sequence - L.chalumnae:293 P.jiroveci:413

H3AWF8              	100.00%		L0PDT0              	100.00%
Bootstrap support for H3AWF8 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #287. Best score 410 bits
Score difference with first non-orthologous sequence - L.chalumnae:130 P.jiroveci:109

H2ZVH7              	100.00%		L0P6T3              	100.00%
Bootstrap support for H2ZVH7 as seed ortholog is 99%.
Bootstrap support for L0P6T3 as seed ortholog is 99%.

Group of orthologs #288. Best score 409 bits
Score difference with first non-orthologous sequence - L.chalumnae:208 P.jiroveci:409

H3B343              	100.00%		L0PBF6              	100.00%
H3BHN0              	44.68%		
Bootstrap support for H3B343 as seed ortholog is 100%.
Bootstrap support for L0PBF6 as seed ortholog is 100%.

Group of orthologs #289. Best score 408 bits
Score difference with first non-orthologous sequence - L.chalumnae:408 P.jiroveci:408

H2ZYJ0              	100.00%		L0PCH8              	100.00%
Bootstrap support for H2ZYJ0 as seed ortholog is 100%.
Bootstrap support for L0PCH8 as seed ortholog is 100%.

Group of orthologs #290. Best score 408 bits
Score difference with first non-orthologous sequence - L.chalumnae:408 P.jiroveci:408

H3APX4              	100.00%		L0PAN7              	100.00%
Bootstrap support for H3APX4 as seed ortholog is 100%.
Bootstrap support for L0PAN7 as seed ortholog is 100%.

Group of orthologs #291. Best score 406 bits
Score difference with first non-orthologous sequence - L.chalumnae:406 P.jiroveci:406

H3AMV4              	100.00%		L0PFC2              	100.00%
Bootstrap support for H3AMV4 as seed ortholog is 100%.
Bootstrap support for L0PFC2 as seed ortholog is 100%.

Group of orthologs #292. Best score 406 bits
Score difference with first non-orthologous sequence - L.chalumnae:406 P.jiroveci:406

H3BG71              	100.00%		L0P7L7              	100.00%
Bootstrap support for H3BG71 as seed ortholog is 100%.
Bootstrap support for L0P7L7 as seed ortholog is 100%.

Group of orthologs #293. Best score 404 bits
Score difference with first non-orthologous sequence - L.chalumnae:404 P.jiroveci:404

H3B3Z3              	100.00%		L0PAH9              	100.00%
                    	       		L0PAZ7              	29.05%
Bootstrap support for H3B3Z3 as seed ortholog is 100%.
Bootstrap support for L0PAH9 as seed ortholog is 100%.

Group of orthologs #294. Best score 404 bits
Score difference with first non-orthologous sequence - L.chalumnae:314 P.jiroveci:404

H3AQE4              	100.00%		L0PB82              	100.00%
Bootstrap support for H3AQE4 as seed ortholog is 99%.
Bootstrap support for L0PB82 as seed ortholog is 100%.

Group of orthologs #295. Best score 403 bits
Score difference with first non-orthologous sequence - L.chalumnae:21 P.jiroveci:118

H2ZZ30              	100.00%		L0PGJ9              	100.00%
Bootstrap support for H2ZZ30 as seed ortholog is 46%.
Alternative seed ortholog is H3BBT8 (21 bits away from this cluster)
Bootstrap support for L0PGJ9 as seed ortholog is 99%.

Group of orthologs #296. Best score 402 bits
Score difference with first non-orthologous sequence - L.chalumnae:179 P.jiroveci:269

H3A2S9              	100.00%		L0PFB1              	100.00%
H3A9U2              	54.44%		
Bootstrap support for H3A2S9 as seed ortholog is 99%.
Bootstrap support for L0PFB1 as seed ortholog is 100%.

Group of orthologs #297. Best score 401 bits
Score difference with first non-orthologous sequence - L.chalumnae:9 P.jiroveci:77

H3BI57              	100.00%		L0PAY3              	100.00%
H3AGI8              	32.37%		
Bootstrap support for H3BI57 as seed ortholog is 62%.
Alternative seed ortholog is M3XH50 (9 bits away from this cluster)
Bootstrap support for L0PAY3 as seed ortholog is 99%.

Group of orthologs #298. Best score 401 bits
Score difference with first non-orthologous sequence - L.chalumnae:401 P.jiroveci:401

H3ADV7              	100.00%		L0PAE9              	100.00%
Bootstrap support for H3ADV7 as seed ortholog is 100%.
Bootstrap support for L0PAE9 as seed ortholog is 100%.

Group of orthologs #299. Best score 401 bits
Score difference with first non-orthologous sequence - L.chalumnae:401 P.jiroveci:401

H3A9R2              	100.00%		L0PIC6              	100.00%
Bootstrap support for H3A9R2 as seed ortholog is 100%.
Bootstrap support for L0PIC6 as seed ortholog is 100%.

Group of orthologs #300. Best score 401 bits
Score difference with first non-orthologous sequence - L.chalumnae:256 P.jiroveci:401

M3XJ87              	100.00%		L0PGJ5              	100.00%
Bootstrap support for M3XJ87 as seed ortholog is 99%.
Bootstrap support for L0PGJ5 as seed ortholog is 100%.

Group of orthologs #301. Best score 400 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:10

H3AGW5              	100.00%		L0PE81              	100.00%
H3A4Z0              	37.97%		
Bootstrap support for H3AGW5 as seed ortholog is 99%.
Bootstrap support for L0PE81 as seed ortholog is 53%.
Alternative seed ortholog is L0PAN3 (10 bits away from this cluster)

Group of orthologs #302. Best score 399 bits
Score difference with first non-orthologous sequence - L.chalumnae:399 P.jiroveci:399

H3B669              	100.00%		L0PI13              	100.00%
H2ZW57              	60.26%		
Bootstrap support for H3B669 as seed ortholog is 100%.
Bootstrap support for L0PI13 as seed ortholog is 100%.

Group of orthologs #303. Best score 398 bits
Score difference with first non-orthologous sequence - L.chalumnae:398 P.jiroveci:398

H3A3A1              	100.00%		L0PHJ7              	100.00%
Bootstrap support for H3A3A1 as seed ortholog is 100%.
Bootstrap support for L0PHJ7 as seed ortholog is 100%.

Group of orthologs #304. Best score 398 bits
Score difference with first non-orthologous sequence - L.chalumnae:398 P.jiroveci:398

H3BCT6              	100.00%		L0PEY9              	100.00%
Bootstrap support for H3BCT6 as seed ortholog is 100%.
Bootstrap support for L0PEY9 as seed ortholog is 100%.

Group of orthologs #305. Best score 397 bits
Score difference with first non-orthologous sequence - L.chalumnae:137 P.jiroveci:266

H3B5A9              	100.00%		L0PBY8              	100.00%
H3ACR9              	47.93%		
Bootstrap support for H3B5A9 as seed ortholog is 99%.
Bootstrap support for L0PBY8 as seed ortholog is 100%.

Group of orthologs #306. Best score 397 bits
Score difference with first non-orthologous sequence - L.chalumnae:397 P.jiroveci:397

H3A2G3              	100.00%		L0PGA8              	100.00%
Bootstrap support for H3A2G3 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #307. Best score 395 bits
Score difference with first non-orthologous sequence - L.chalumnae:174 P.jiroveci:395

H3ASW1              	100.00%		L0P702              	100.00%
H2ZZ89              	41.79%		
Bootstrap support for H3ASW1 as seed ortholog is 99%.
Bootstrap support for L0P702 as seed ortholog is 100%.

Group of orthologs #308. Best score 395 bits
Score difference with first non-orthologous sequence - L.chalumnae:268 P.jiroveci:328

H3AGE6              	100.00%		L0PA88              	100.00%
Bootstrap support for H3AGE6 as seed ortholog is 100%.
Bootstrap support for L0PA88 as seed ortholog is 100%.

Group of orthologs #309. Best score 393 bits
Score difference with first non-orthologous sequence - L.chalumnae:393 P.jiroveci:393

H2ZWM9              	100.00%		L0PCV8              	100.00%
Bootstrap support for H2ZWM9 as seed ortholog is 100%.
Bootstrap support for L0PCV8 as seed ortholog is 100%.

Group of orthologs #310. Best score 392 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:392

H3B7A9              	100.00%		L0PCP3              	100.00%
Bootstrap support for H3B7A9 as seed ortholog is 98%.
Bootstrap support for L0PCP3 as seed ortholog is 100%.

Group of orthologs #311. Best score 390 bits
Score difference with first non-orthologous sequence - L.chalumnae:390 P.jiroveci:390

H3A7L7              	100.00%		L0PB68              	100.00%
Bootstrap support for H3A7L7 as seed ortholog is 100%.
Bootstrap support for L0PB68 as seed ortholog is 100%.

Group of orthologs #312. Best score 390 bits
Score difference with first non-orthologous sequence - L.chalumnae:390 P.jiroveci:130

H3A703              	100.00%		L0PD82              	100.00%
Bootstrap support for H3A703 as seed ortholog is 100%.
Bootstrap support for L0PD82 as seed ortholog is 99%.

Group of orthologs #313. Best score 388 bits
Score difference with first non-orthologous sequence - L.chalumnae:388 P.jiroveci:388

H2ZTP2              	100.00%		L0PCL9              	100.00%
Bootstrap support for H2ZTP2 as seed ortholog is 100%.
Bootstrap support for L0PCL9 as seed ortholog is 100%.

Group of orthologs #314. Best score 388 bits
Score difference with first non-orthologous sequence - L.chalumnae:388 P.jiroveci:388

H3A1P7              	100.00%		L0P969              	100.00%
Bootstrap support for H3A1P7 as seed ortholog is 100%.
Bootstrap support for L0P969 as seed ortholog is 100%.

Group of orthologs #315. Best score 388 bits
Score difference with first non-orthologous sequence - L.chalumnae:388 P.jiroveci:388

H3ASK7              	100.00%		L0PB23              	100.00%
Bootstrap support for H3ASK7 as seed ortholog is 100%.
Bootstrap support for L0PB23 as seed ortholog is 100%.

Group of orthologs #316. Best score 388 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:388

H3B1E5              	100.00%		L0PA15              	100.00%
Bootstrap support for H3B1E5 as seed ortholog is 99%.
Bootstrap support for L0PA15 as seed ortholog is 100%.

Group of orthologs #317. Best score 388 bits
Score difference with first non-orthologous sequence - L.chalumnae:388 P.jiroveci:209

H3BD43              	100.00%		L0P8U1              	100.00%
Bootstrap support for H3BD43 as seed ortholog is 100%.
Bootstrap support for L0P8U1 as seed ortholog is 99%.

Group of orthologs #318. Best score 387 bits
Score difference with first non-orthologous sequence - L.chalumnae:387 P.jiroveci:387

H3B8N1              	100.00%		L0PG01              	100.00%
H3ATY0              	46.89%		L0P7J0              	81.67%
Bootstrap support for H3B8N1 as seed ortholog is 100%.
Bootstrap support for L0PG01 as seed ortholog is 100%.

Group of orthologs #319. Best score 386 bits
Score difference with first non-orthologous sequence - L.chalumnae:386 P.jiroveci:386

H2ZZ12              	100.00%		L0PA23              	100.00%
Bootstrap support for H2ZZ12 as seed ortholog is 100%.
Bootstrap support for L0PA23 as seed ortholog is 100%.

Group of orthologs #320. Best score 385 bits
Score difference with first non-orthologous sequence - L.chalumnae:269 P.jiroveci:107

H3A9D1              	100.00%		L0P6U6              	100.00%
M3XI24              	5.44%		
Bootstrap support for H3A9D1 as seed ortholog is 100%.
Bootstrap support for L0P6U6 as seed ortholog is 98%.

Group of orthologs #321. Best score 385 bits
Score difference with first non-orthologous sequence - L.chalumnae:385 P.jiroveci:385

H3AKX9              	100.00%		L0PAM5              	100.00%
H3AMU7              	15.84%		
Bootstrap support for H3AKX9 as seed ortholog is 100%.
Bootstrap support for L0PAM5 as seed ortholog is 100%.

Group of orthologs #322. Best score 384 bits
Score difference with first non-orthologous sequence - L.chalumnae:316 P.jiroveci:384

H3B2K6              	100.00%		L0P7T8              	100.00%
Bootstrap support for H3B2K6 as seed ortholog is 100%.
Bootstrap support for L0P7T8 as seed ortholog is 100%.

Group of orthologs #323. Best score 383 bits
Score difference with first non-orthologous sequence - L.chalumnae:195 P.jiroveci:383

H3ADI2              	100.00%		L0PID0              	100.00%
Bootstrap support for H3ADI2 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 100%.

Group of orthologs #324. Best score 382 bits
Score difference with first non-orthologous sequence - L.chalumnae:251 P.jiroveci:283

H3BFN2              	100.00%		L0P7Z7              	100.00%
Bootstrap support for H3BFN2 as seed ortholog is 100%.
Bootstrap support for L0P7Z7 as seed ortholog is 100%.

Group of orthologs #325. Best score 381 bits
Score difference with first non-orthologous sequence - L.chalumnae:381 P.jiroveci:381

H3B323              	100.00%		L0PAB3              	100.00%
Bootstrap support for H3B323 as seed ortholog is 100%.
Bootstrap support for L0PAB3 as seed ortholog is 100%.

Group of orthologs #326. Best score 381 bits
Score difference with first non-orthologous sequence - L.chalumnae:381 P.jiroveci:381

H3B4Y2              	100.00%		L0PGC4              	100.00%
Bootstrap support for H3B4Y2 as seed ortholog is 100%.
Bootstrap support for L0PGC4 as seed ortholog is 100%.

Group of orthologs #327. Best score 380 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:380

H3BA46              	100.00%		L0PGL8              	100.00%
Bootstrap support for H3BA46 as seed ortholog is 100%.
Bootstrap support for L0PGL8 as seed ortholog is 100%.

Group of orthologs #328. Best score 380 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:380

H3BAW4              	100.00%		L0PGN1              	100.00%
Bootstrap support for H3BAW4 as seed ortholog is 99%.
Bootstrap support for L0PGN1 as seed ortholog is 100%.

Group of orthologs #329. Best score 379 bits
Score difference with first non-orthologous sequence - L.chalumnae:61 P.jiroveci:208

H3B1U6              	100.00%		L0P9Z0              	100.00%
H2ZVH9              	57.45%		
Bootstrap support for H3B1U6 as seed ortholog is 94%.
Bootstrap support for L0P9Z0 as seed ortholog is 100%.

Group of orthologs #330. Best score 379 bits
Score difference with first non-orthologous sequence - L.chalumnae:188 P.jiroveci:379

H3BGZ0              	100.00%		L0PE19              	100.00%
Bootstrap support for H3BGZ0 as seed ortholog is 100%.
Bootstrap support for L0PE19 as seed ortholog is 100%.

Group of orthologs #331. Best score 378 bits
Score difference with first non-orthologous sequence - L.chalumnae:378 P.jiroveci:378

H3BA83              	100.00%		L0PFP6              	100.00%
Bootstrap support for H3BA83 as seed ortholog is 100%.
Bootstrap support for L0PFP6 as seed ortholog is 100%.

Group of orthologs #332. Best score 377 bits
Score difference with first non-orthologous sequence - L.chalumnae:107 P.jiroveci:228

H3ARF4              	100.00%		L0PCW4              	100.00%
H2ZXD4              	100.00%		L0PFK8              	100.00%
H3ATW7              	51.50%		
Bootstrap support for H3ARF4 as seed ortholog is 99%.
Bootstrap support for H2ZXD4 as seed ortholog is 99%.
Bootstrap support for L0PCW4 as seed ortholog is 100%.
Bootstrap support for L0PFK8 as seed ortholog is 100%.

Group of orthologs #333. Best score 377 bits
Score difference with first non-orthologous sequence - L.chalumnae:243 P.jiroveci:377

H3A6K0              	100.00%		L0PDQ3              	100.00%
Bootstrap support for H3A6K0 as seed ortholog is 100%.
Bootstrap support for L0PDQ3 as seed ortholog is 100%.

Group of orthologs #334. Best score 377 bits
Score difference with first non-orthologous sequence - L.chalumnae:140 P.jiroveci:377

H3BGP9              	100.00%		L0P9R8              	100.00%
Bootstrap support for H3BGP9 as seed ortholog is 99%.
Bootstrap support for L0P9R8 as seed ortholog is 100%.

Group of orthologs #335. Best score 377 bits
Score difference with first non-orthologous sequence - L.chalumnae:176 P.jiroveci:377

M3XJT3              	100.00%		L0PG48              	100.00%
Bootstrap support for M3XJT3 as seed ortholog is 99%.
Bootstrap support for L0PG48 as seed ortholog is 100%.

Group of orthologs #336. Best score 376 bits
Score difference with first non-orthologous sequence - L.chalumnae:41 P.jiroveci:149

H3AT53              	100.00%		L0PHY6              	100.00%
Bootstrap support for H3AT53 as seed ortholog is 85%.
Bootstrap support for L0PHY6 as seed ortholog is 100%.

Group of orthologs #337. Best score 375 bits
Score difference with first non-orthologous sequence - L.chalumnae:375 P.jiroveci:179

H3BC66              	100.00%		L0PBH6              	100.00%
H3BHT4              	51.90%		
H3B1H5              	47.19%		
H3AT49              	45.22%		
Bootstrap support for H3BC66 as seed ortholog is 100%.
Bootstrap support for L0PBH6 as seed ortholog is 100%.

Group of orthologs #338. Best score 375 bits
Score difference with first non-orthologous sequence - L.chalumnae:130 P.jiroveci:375

H3AW75              	100.00%		L0PH29              	100.00%
H3B5G8              	55.02%		
Bootstrap support for H3AW75 as seed ortholog is 99%.
Bootstrap support for L0PH29 as seed ortholog is 100%.

Group of orthologs #339. Best score 374 bits
Score difference with first non-orthologous sequence - L.chalumnae:374 P.jiroveci:374

H3BDT3              	100.00%		L0PGF5              	100.00%
Bootstrap support for H3BDT3 as seed ortholog is 100%.
Bootstrap support for L0PGF5 as seed ortholog is 100%.

Group of orthologs #340. Best score 373 bits
Score difference with first non-orthologous sequence - L.chalumnae:373 P.jiroveci:373

H2ZZN1              	100.00%		L0PAI0              	100.00%
Bootstrap support for H2ZZN1 as seed ortholog is 100%.
Bootstrap support for L0PAI0 as seed ortholog is 100%.

Group of orthologs #341. Best score 373 bits
Score difference with first non-orthologous sequence - L.chalumnae:373 P.jiroveci:373

H3A6D2              	100.00%		L0P6U2              	100.00%
Bootstrap support for H3A6D2 as seed ortholog is 100%.
Bootstrap support for L0P6U2 as seed ortholog is 100%.

Group of orthologs #342. Best score 373 bits
Score difference with first non-orthologous sequence - L.chalumnae:373 P.jiroveci:373

H3B421              	100.00%		L0PAC7              	100.00%
Bootstrap support for H3B421 as seed ortholog is 100%.
Bootstrap support for L0PAC7 as seed ortholog is 100%.

Group of orthologs #343. Best score 371 bits
Score difference with first non-orthologous sequence - L.chalumnae:371 P.jiroveci:371

H2ZX45              	100.00%		L0P9B4              	100.00%
Bootstrap support for H2ZX45 as seed ortholog is 100%.
Bootstrap support for L0P9B4 as seed ortholog is 100%.

Group of orthologs #344. Best score 371 bits
Score difference with first non-orthologous sequence - L.chalumnae:371 P.jiroveci:371

H3A9Y8              	100.00%		L0P8Z3              	100.00%
Bootstrap support for H3A9Y8 as seed ortholog is 100%.
Bootstrap support for L0P8Z3 as seed ortholog is 100%.

Group of orthologs #345. Best score 371 bits
Score difference with first non-orthologous sequence - L.chalumnae:228 P.jiroveci:371

H3AZZ8              	100.00%		L0PHI3              	100.00%
Bootstrap support for H3AZZ8 as seed ortholog is 100%.
Bootstrap support for L0PHI3 as seed ortholog is 100%.

Group of orthologs #346. Best score 371 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:371

H3BCL8              	100.00%		L0P9Y8              	100.00%
Bootstrap support for H3BCL8 as seed ortholog is 87%.
Bootstrap support for L0P9Y8 as seed ortholog is 100%.

Group of orthologs #347. Best score 370 bits
Score difference with first non-orthologous sequence - L.chalumnae:231 P.jiroveci:370

H3A516              	100.00%		L0PCN1              	100.00%
Bootstrap support for H3A516 as seed ortholog is 100%.
Bootstrap support for L0PCN1 as seed ortholog is 100%.

Group of orthologs #348. Best score 370 bits
Score difference with first non-orthologous sequence - L.chalumnae:370 P.jiroveci:370

H3BHA1              	100.00%		L0PED5              	100.00%
Bootstrap support for H3BHA1 as seed ortholog is 100%.
Bootstrap support for L0PED5 as seed ortholog is 100%.

Group of orthologs #349. Best score 369 bits
Score difference with first non-orthologous sequence - L.chalumnae:369 P.jiroveci:369

H2ZYS3              	100.00%		L0PCR5              	100.00%
H3A6P8              	52.36%		L0P9C2              	56.93%
Bootstrap support for H2ZYS3 as seed ortholog is 100%.
Bootstrap support for L0PCR5 as seed ortholog is 100%.

Group of orthologs #350. Best score 369 bits
Score difference with first non-orthologous sequence - L.chalumnae:369 P.jiroveci:369

H3ASY8              	100.00%		L0P8T4              	100.00%
Bootstrap support for H3ASY8 as seed ortholog is 100%.
Bootstrap support for L0P8T4 as seed ortholog is 100%.

Group of orthologs #351. Best score 369 bits
Score difference with first non-orthologous sequence - L.chalumnae:286 P.jiroveci:369

H3AZF0              	100.00%		L0PDV0              	100.00%
Bootstrap support for H3AZF0 as seed ortholog is 100%.
Bootstrap support for L0PDV0 as seed ortholog is 100%.

Group of orthologs #352. Best score 368 bits
Score difference with first non-orthologous sequence - L.chalumnae:368 P.jiroveci:368

H2ZVC0              	100.00%		L0P9U8              	100.00%
Bootstrap support for H2ZVC0 as seed ortholog is 100%.
Bootstrap support for L0P9U8 as seed ortholog is 100%.

Group of orthologs #353. Best score 367 bits
Score difference with first non-orthologous sequence - L.chalumnae:367 P.jiroveci:367

H3AFQ6              	100.00%		L0PES3              	100.00%
Bootstrap support for H3AFQ6 as seed ortholog is 100%.
Bootstrap support for L0PES3 as seed ortholog is 100%.

Group of orthologs #354. Best score 366 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:165

H2ZWY2              	100.00%		L0P7N1              	100.00%
Bootstrap support for H2ZWY2 as seed ortholog is 96%.
Bootstrap support for L0P7N1 as seed ortholog is 99%.

Group of orthologs #355. Best score 366 bits
Score difference with first non-orthologous sequence - L.chalumnae:366 P.jiroveci:366

H3A0A5              	100.00%		L0PCB2              	100.00%
Bootstrap support for H3A0A5 as seed ortholog is 100%.
Bootstrap support for L0PCB2 as seed ortholog is 100%.

Group of orthologs #356. Best score 364 bits
Score difference with first non-orthologous sequence - L.chalumnae:304 P.jiroveci:364

H3ALS6              	100.00%		L0PEX9              	100.00%
H3AJY7              	24.03%		
Bootstrap support for H3ALS6 as seed ortholog is 100%.
Bootstrap support for L0PEX9 as seed ortholog is 100%.

Group of orthologs #357. Best score 364 bits
Score difference with first non-orthologous sequence - L.chalumnae:260 P.jiroveci:364

H3BB41              	100.00%		L0PAL8              	100.00%
Bootstrap support for H3BB41 as seed ortholog is 100%.
Bootstrap support for L0PAL8 as seed ortholog is 100%.

Group of orthologs #358. Best score 363 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:363

H2ZWW5              	100.00%		L0PCY5              	100.00%
Bootstrap support for H2ZWW5 as seed ortholog is 99%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #359. Best score 362 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:362

H3A4R9              	100.00%		L0P942              	100.00%
H3AQ93              	12.81%		L0P7J6              	59.18%
H3A2R9              	9.02%		
Bootstrap support for H3A4R9 as seed ortholog is 99%.
Bootstrap support for L0P942 as seed ortholog is 100%.

Group of orthologs #360. Best score 362 bits
Score difference with first non-orthologous sequence - L.chalumnae:362 P.jiroveci:362

H3A0R1              	100.00%		L0PBC5              	100.00%
H2ZS79              	65.04%		
Bootstrap support for H3A0R1 as seed ortholog is 100%.
Bootstrap support for L0PBC5 as seed ortholog is 100%.

Group of orthologs #361. Best score 362 bits
Score difference with first non-orthologous sequence - L.chalumnae:362 P.jiroveci:362

H3A0F5              	100.00%		L0P9B6              	100.00%
Bootstrap support for H3A0F5 as seed ortholog is 100%.
Bootstrap support for L0P9B6 as seed ortholog is 100%.

Group of orthologs #362. Best score 361 bits
Score difference with first non-orthologous sequence - L.chalumnae:361 P.jiroveci:361

H3BBC2              	100.00%		L0PBA8              	100.00%
H3B5H5              	13.10%		
Bootstrap support for H3BBC2 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #363. Best score 361 bits
Score difference with first non-orthologous sequence - L.chalumnae:235 P.jiroveci:361

H3B9G3              	100.00%		L0PA57              	100.00%
Bootstrap support for H3B9G3 as seed ortholog is 100%.
Bootstrap support for L0PA57 as seed ortholog is 100%.

Group of orthologs #364. Best score 358 bits
Score difference with first non-orthologous sequence - L.chalumnae:291 P.jiroveci:358

H3AVP9              	100.00%		L0PBQ1              	100.00%
Bootstrap support for H3AVP9 as seed ortholog is 100%.
Bootstrap support for L0PBQ1 as seed ortholog is 100%.

Group of orthologs #365. Best score 357 bits
Score difference with first non-orthologous sequence - L.chalumnae:357 P.jiroveci:357

H3BFG9              	100.00%		L0PE98              	100.00%
H3AMH0              	32.24%		
Bootstrap support for H3BFG9 as seed ortholog is 100%.
Bootstrap support for L0PE98 as seed ortholog is 100%.

Group of orthologs #366. Best score 355 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:147

H3A406              	100.00%		L0PBU4              	100.00%
H3AI90              	63.10%		
H3BGB6              	56.44%		
Bootstrap support for H3A406 as seed ortholog is 100%.
Bootstrap support for L0PBU4 as seed ortholog is 99%.

Group of orthologs #367. Best score 355 bits
Score difference with first non-orthologous sequence - L.chalumnae:355 P.jiroveci:355

H3B4A5              	100.00%		L0PDM0              	100.00%
H3ASV2              	69.55%		
Bootstrap support for H3B4A5 as seed ortholog is 100%.
Bootstrap support for L0PDM0 as seed ortholog is 100%.

Group of orthologs #368. Best score 354 bits
Score difference with first non-orthologous sequence - L.chalumnae:354 P.jiroveci:354

H3A6L1              	100.00%		L0PAC0              	100.00%
Bootstrap support for H3A6L1 as seed ortholog is 100%.
Bootstrap support for L0PAC0 as seed ortholog is 100%.

Group of orthologs #369. Best score 354 bits
Score difference with first non-orthologous sequence - L.chalumnae:354 P.jiroveci:354

H3B1N4              	100.00%		L0P9S4              	100.00%
Bootstrap support for H3B1N4 as seed ortholog is 100%.
Bootstrap support for L0P9S4 as seed ortholog is 100%.

Group of orthologs #370. Best score 353 bits
Score difference with first non-orthologous sequence - L.chalumnae:353 P.jiroveci:225

H3B7I4              	100.00%		L0PAW2              	100.00%
Bootstrap support for H3B7I4 as seed ortholog is 100%.
Bootstrap support for L0PAW2 as seed ortholog is 100%.

Group of orthologs #371. Best score 352 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:352

H3ANL8              	100.00%		L0P7X9              	100.00%
                    	       		L0PBE2              	81.02%
Bootstrap support for H3ANL8 as seed ortholog is 94%.
Bootstrap support for L0P7X9 as seed ortholog is 100%.

Group of orthologs #372. Best score 352 bits
Score difference with first non-orthologous sequence - L.chalumnae:352 P.jiroveci:264

H3AUY3              	100.00%		L0P8W4              	100.00%
Bootstrap support for H3AUY3 as seed ortholog is 100%.
Bootstrap support for L0P8W4 as seed ortholog is 100%.

Group of orthologs #373. Best score 351 bits
Score difference with first non-orthologous sequence - L.chalumnae:351 P.jiroveci:290

H3ACK3              	100.00%		L0P7R5              	100.00%
Bootstrap support for H3ACK3 as seed ortholog is 100%.
Bootstrap support for L0P7R5 as seed ortholog is 100%.

Group of orthologs #374. Best score 351 bits
Score difference with first non-orthologous sequence - L.chalumnae:351 P.jiroveci:351

H3AL64              	100.00%		L0P8R8              	100.00%
Bootstrap support for H3AL64 as seed ortholog is 100%.
Bootstrap support for L0P8R8 as seed ortholog is 100%.

Group of orthologs #375. Best score 351 bits
Score difference with first non-orthologous sequence - L.chalumnae:351 P.jiroveci:61

H3ATQ9              	100.00%		L0PA13              	100.00%
Bootstrap support for H3ATQ9 as seed ortholog is 100%.
Bootstrap support for L0PA13 as seed ortholog is 87%.

Group of orthologs #376. Best score 351 bits
Score difference with first non-orthologous sequence - L.chalumnae:351 P.jiroveci:351

M3XI82              	100.00%		L0PCP1              	100.00%
Bootstrap support for M3XI82 as seed ortholog is 100%.
Bootstrap support for L0PCP1 as seed ortholog is 100%.

Group of orthologs #377. Best score 350 bits
Score difference with first non-orthologous sequence - L.chalumnae:350 P.jiroveci:350

H3AZF3              	100.00%		L0PCT6              	100.00%
Bootstrap support for H3AZF3 as seed ortholog is 100%.
Bootstrap support for L0PCT6 as seed ortholog is 100%.

Group of orthologs #378. Best score 349 bits
Score difference with first non-orthologous sequence - L.chalumnae:349 P.jiroveci:349

H3B8R6              	100.00%		L0PD02              	100.00%
Bootstrap support for H3B8R6 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 100%.

Group of orthologs #379. Best score 348 bits
Score difference with first non-orthologous sequence - L.chalumnae:348 P.jiroveci:348

H3AES1              	100.00%		L0P8A6              	100.00%
Bootstrap support for H3AES1 as seed ortholog is 100%.
Bootstrap support for L0P8A6 as seed ortholog is 100%.

Group of orthologs #380. Best score 347 bits
Score difference with first non-orthologous sequence - L.chalumnae:347 P.jiroveci:347

H3AFE7              	100.00%		L0PD17              	100.00%
H3A1E0              	37.30%		
Bootstrap support for H3AFE7 as seed ortholog is 100%.
Bootstrap support for L0PD17 as seed ortholog is 100%.

Group of orthologs #381. Best score 347 bits
Score difference with first non-orthologous sequence - L.chalumnae:123 P.jiroveci:347

H3AJH4              	100.00%		L0PCL4              	100.00%
Bootstrap support for H3AJH4 as seed ortholog is 98%.
Bootstrap support for L0PCL4 as seed ortholog is 100%.

Group of orthologs #382. Best score 347 bits
Score difference with first non-orthologous sequence - L.chalumnae:185 P.jiroveci:347

H3BDP3              	100.00%		L0P983              	100.00%
Bootstrap support for H3BDP3 as seed ortholog is 99%.
Bootstrap support for L0P983 as seed ortholog is 100%.

Group of orthologs #383. Best score 346 bits
Score difference with first non-orthologous sequence - L.chalumnae:275 P.jiroveci:346

H3AJZ4              	100.00%		L0PIR9              	100.00%
Bootstrap support for H3AJZ4 as seed ortholog is 100%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #384. Best score 344 bits
Score difference with first non-orthologous sequence - L.chalumnae:344 P.jiroveci:344

H3B819              	100.00%		L0PD99              	100.00%
Bootstrap support for H3B819 as seed ortholog is 100%.
Bootstrap support for L0PD99 as seed ortholog is 100%.

Group of orthologs #385. Best score 343 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:343

H2ZZA6              	100.00%		L0PA09              	100.00%
Bootstrap support for H2ZZA6 as seed ortholog is 99%.
Bootstrap support for L0PA09 as seed ortholog is 100%.

Group of orthologs #386. Best score 342 bits
Score difference with first non-orthologous sequence - L.chalumnae:342 P.jiroveci:342

H2ZW28              	100.00%		L0PBT3              	100.00%
Bootstrap support for H2ZW28 as seed ortholog is 100%.
Bootstrap support for L0PBT3 as seed ortholog is 100%.

Group of orthologs #387. Best score 342 bits
Score difference with first non-orthologous sequence - L.chalumnae:342 P.jiroveci:342

H3A4A4              	100.00%		L0P8R5              	100.00%
Bootstrap support for H3A4A4 as seed ortholog is 100%.
Bootstrap support for L0P8R5 as seed ortholog is 100%.

Group of orthologs #388. Best score 337 bits
Score difference with first non-orthologous sequence - L.chalumnae:337 P.jiroveci:337

H2ZV29              	100.00%		L0P7N5              	100.00%
H3BAP8              	42.89%		
Bootstrap support for H2ZV29 as seed ortholog is 100%.
Bootstrap support for L0P7N5 as seed ortholog is 100%.

Group of orthologs #389. Best score 336 bits
Score difference with first non-orthologous sequence - L.chalumnae:336 P.jiroveci:336

H3A7A8              	100.00%		L0PB54              	100.00%
H3AIQ7              	100.00%		
Bootstrap support for H3A7A8 as seed ortholog is 100%.
Bootstrap support for H3AIQ7 as seed ortholog is 100%.
Bootstrap support for L0PB54 as seed ortholog is 100%.

Group of orthologs #390. Best score 336 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:336

H3ARJ1              	100.00%		L0PA42              	100.00%
H3AA47              	24.15%		
Bootstrap support for H3ARJ1 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #391. Best score 336 bits
Score difference with first non-orthologous sequence - L.chalumnae:155 P.jiroveci:221

H3A0R9              	100.00%		L0PEF1              	100.00%
Bootstrap support for H3A0R9 as seed ortholog is 99%.
Bootstrap support for L0PEF1 as seed ortholog is 100%.

Group of orthologs #392. Best score 336 bits
Score difference with first non-orthologous sequence - L.chalumnae:336 P.jiroveci:336

H3A450              	100.00%		L0PC90              	100.00%
Bootstrap support for H3A450 as seed ortholog is 100%.
Bootstrap support for L0PC90 as seed ortholog is 100%.

Group of orthologs #393. Best score 336 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:194

H3ADW2              	100.00%		L0PG34              	100.00%
Bootstrap support for H3ADW2 as seed ortholog is 94%.
Bootstrap support for L0PG34 as seed ortholog is 100%.

Group of orthologs #394. Best score 336 bits
Score difference with first non-orthologous sequence - L.chalumnae:126 P.jiroveci:336

H3BBL3              	100.00%		L0P891              	100.00%
Bootstrap support for H3BBL3 as seed ortholog is 99%.
Bootstrap support for L0P891 as seed ortholog is 100%.

Group of orthologs #395. Best score 334 bits
Score difference with first non-orthologous sequence - L.chalumnae:334 P.jiroveci:334

H3BID1              	100.00%		L0PBP4              	100.00%
Bootstrap support for H3BID1 as seed ortholog is 100%.
Bootstrap support for L0PBP4 as seed ortholog is 100%.

Group of orthologs #396. Best score 332 bits
Score difference with first non-orthologous sequence - L.chalumnae:332 P.jiroveci:332

H3AFA1              	100.00%		L0PCQ8              	100.00%
H3AHE6              	26.88%		
Bootstrap support for H3AFA1 as seed ortholog is 100%.
Bootstrap support for L0PCQ8 as seed ortholog is 100%.

Group of orthologs #397. Best score 332 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:332

H3A7C3              	100.00%		L0P865              	100.00%
Bootstrap support for H3A7C3 as seed ortholog is 99%.
Bootstrap support for L0P865 as seed ortholog is 100%.

Group of orthologs #398. Best score 332 bits
Score difference with first non-orthologous sequence - L.chalumnae:332 P.jiroveci:251

H3AGB5              	100.00%		L0P8N0              	100.00%
Bootstrap support for H3AGB5 as seed ortholog is 100%.
Bootstrap support for L0P8N0 as seed ortholog is 100%.

Group of orthologs #399. Best score 331 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:265

H2ZY90              	100.00%		L0PB21              	100.00%
H3B5C3              	69.52%		
Bootstrap support for H2ZY90 as seed ortholog is 100%.
Bootstrap support for L0PB21 as seed ortholog is 100%.

Group of orthologs #400. Best score 331 bits
Score difference with first non-orthologous sequence - L.chalumnae:267 P.jiroveci:331

H2ZYS5              	100.00%		L0P8G8              	100.00%
Bootstrap support for H2ZYS5 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #401. Best score 331 bits
Score difference with first non-orthologous sequence - L.chalumnae:331 P.jiroveci:331

H3B4E4              	100.00%		L0P8N3              	100.00%
Bootstrap support for H3B4E4 as seed ortholog is 100%.
Bootstrap support for L0P8N3 as seed ortholog is 100%.

Group of orthologs #402. Best score 330 bits
Score difference with first non-orthologous sequence - L.chalumnae:212 P.jiroveci:212

H3AB20              	100.00%		L0PBM6              	100.00%
Bootstrap support for H3AB20 as seed ortholog is 99%.
Bootstrap support for L0PBM6 as seed ortholog is 99%.

Group of orthologs #403. Best score 329 bits
Score difference with first non-orthologous sequence - L.chalumnae:175 P.jiroveci:329

H3BI08              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	51.10%
Bootstrap support for H3BI08 as seed ortholog is 100%.
Bootstrap support for L0PC17 as seed ortholog is 100%.

Group of orthologs #404. Best score 329 bits
Score difference with first non-orthologous sequence - L.chalumnae:329 P.jiroveci:329

H3AU89              	100.00%		L0PDS0              	100.00%
Bootstrap support for H3AU89 as seed ortholog is 100%.
Bootstrap support for L0PDS0 as seed ortholog is 100%.

Group of orthologs #405. Best score 328 bits
Score difference with first non-orthologous sequence - L.chalumnae:30 P.jiroveci:328

H3AES9              	100.00%		L0PBM5              	100.00%
H3B7V1              	30.76%		
H3B7J0              	21.68%		
Bootstrap support for H3AES9 as seed ortholog is 71%.
Alternative seed ortholog is H3B3M5 (30 bits away from this cluster)
Bootstrap support for L0PBM5 as seed ortholog is 100%.

Group of orthologs #406. Best score 327 bits
Score difference with first non-orthologous sequence - L.chalumnae:327 P.jiroveci:327

H3BHF1              	100.00%		L0PBY3              	100.00%
H3BFA5              	28.92%		
H3AEE9              	25.12%		
Bootstrap support for H3BHF1 as seed ortholog is 100%.
Bootstrap support for L0PBY3 as seed ortholog is 100%.

Group of orthologs #407. Best score 327 bits
Score difference with first non-orthologous sequence - L.chalumnae:327 P.jiroveci:327

H3ALE4              	100.00%		L0PFI2              	100.00%
Bootstrap support for H3ALE4 as seed ortholog is 100%.
Bootstrap support for L0PFI2 as seed ortholog is 100%.

Group of orthologs #408. Best score 325 bits
Score difference with first non-orthologous sequence - L.chalumnae:325 P.jiroveci:325

H2ZRX1              	100.00%		L0PBA9              	100.00%
H2ZXP4              	10.78%		
H2ZSS8              	7.63%		
Bootstrap support for H2ZRX1 as seed ortholog is 100%.
Bootstrap support for L0PBA9 as seed ortholog is 100%.

Group of orthologs #409. Best score 325 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:325

H3AQQ7              	100.00%		L0PGS3              	100.00%
Bootstrap support for H3AQQ7 as seed ortholog is 99%.
Bootstrap support for L0PGS3 as seed ortholog is 100%.

Group of orthologs #410. Best score 325 bits
Score difference with first non-orthologous sequence - L.chalumnae:325 P.jiroveci:325

H3B2D8              	100.00%		L0PD41              	100.00%
Bootstrap support for H3B2D8 as seed ortholog is 100%.
Bootstrap support for L0PD41 as seed ortholog is 100%.

Group of orthologs #411. Best score 324 bits
Score difference with first non-orthologous sequence - L.chalumnae:146 P.jiroveci:212

H3AI73              	100.00%		L0PAY5              	100.00%
Bootstrap support for H3AI73 as seed ortholog is 99%.
Bootstrap support for L0PAY5 as seed ortholog is 100%.

Group of orthologs #412. Best score 323 bits
Score difference with first non-orthologous sequence - L.chalumnae:323 P.jiroveci:323

H3AUQ3              	100.00%		L0PAL9              	100.00%
H3BI78              	67.28%		L0PBY7              	41.27%
Bootstrap support for H3AUQ3 as seed ortholog is 100%.
Bootstrap support for L0PAL9 as seed ortholog is 100%.

Group of orthologs #413. Best score 323 bits
Score difference with first non-orthologous sequence - L.chalumnae:323 P.jiroveci:323

H3A7N5              	100.00%		L0PEI4              	100.00%
Bootstrap support for H3A7N5 as seed ortholog is 100%.
Bootstrap support for L0PEI4 as seed ortholog is 100%.

Group of orthologs #414. Best score 322 bits
Score difference with first non-orthologous sequence - L.chalumnae:230 P.jiroveci:322

H3B812              	100.00%		L0P9D3              	100.00%
                    	       		L0P7B2              	52.66%
Bootstrap support for H3B812 as seed ortholog is 100%.
Bootstrap support for L0P9D3 as seed ortholog is 100%.

Group of orthologs #415. Best score 322 bits
Score difference with first non-orthologous sequence - L.chalumnae:322 P.jiroveci:322

H3ABU7              	100.00%		L0PIV4              	100.00%
Bootstrap support for H3ABU7 as seed ortholog is 100%.
Bootstrap support for L0PIV4 as seed ortholog is 100%.

Group of orthologs #416. Best score 322 bits
Score difference with first non-orthologous sequence - L.chalumnae:322 P.jiroveci:174

H3AXM8              	100.00%		L0P9F3              	100.00%
Bootstrap support for H3AXM8 as seed ortholog is 100%.
Bootstrap support for L0P9F3 as seed ortholog is 99%.

Group of orthologs #417. Best score 322 bits
Score difference with first non-orthologous sequence - L.chalumnae:218 P.jiroveci:322

H3BFN8              	100.00%		L0PFE9              	100.00%
Bootstrap support for H3BFN8 as seed ortholog is 100%.
Bootstrap support for L0PFE9 as seed ortholog is 100%.

Group of orthologs #418. Best score 320 bits
Score difference with first non-orthologous sequence - L.chalumnae:266 P.jiroveci:320

H3B831              	100.00%		L0P8X1              	100.00%
Bootstrap support for H3B831 as seed ortholog is 100%.
Bootstrap support for L0P8X1 as seed ortholog is 100%.

Group of orthologs #419. Best score 319 bits
Score difference with first non-orthologous sequence - L.chalumnae:178 P.jiroveci:319

H3A141              	100.00%		L0PCG4              	100.00%
Bootstrap support for H3A141 as seed ortholog is 100%.
Bootstrap support for L0PCG4 as seed ortholog is 100%.

Group of orthologs #420. Best score 319 bits
Score difference with first non-orthologous sequence - L.chalumnae:319 P.jiroveci:319

H3AGH6              	100.00%		L0PF92              	100.00%
Bootstrap support for H3AGH6 as seed ortholog is 100%.
Bootstrap support for L0PF92 as seed ortholog is 100%.

Group of orthologs #421. Best score 318 bits
Score difference with first non-orthologous sequence - L.chalumnae:194 P.jiroveci:318

H3A6A2              	100.00%		L0PF71              	100.00%
Bootstrap support for H3A6A2 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #422. Best score 318 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:318

H3APV3              	100.00%		L0PFY3              	100.00%
Bootstrap support for H3APV3 as seed ortholog is 83%.
Bootstrap support for L0PFY3 as seed ortholog is 100%.

Group of orthologs #423. Best score 317 bits
Score difference with first non-orthologous sequence - L.chalumnae:317 P.jiroveci:317

H3BAA1              	100.00%		L0PEZ2              	100.00%
                    	       		L0PH30              	85.32%
Bootstrap support for H3BAA1 as seed ortholog is 100%.
Bootstrap support for L0PEZ2 as seed ortholog is 100%.

Group of orthologs #424. Best score 317 bits
Score difference with first non-orthologous sequence - L.chalumnae:317 P.jiroveci:317

H3B1Y6              	100.00%		L0PAU5              	100.00%
Bootstrap support for H3B1Y6 as seed ortholog is 100%.
Bootstrap support for L0PAU5 as seed ortholog is 100%.

Group of orthologs #425. Best score 316 bits
Score difference with first non-orthologous sequence - L.chalumnae:316 P.jiroveci:316

H3AP13              	100.00%		L0PD68              	100.00%
Bootstrap support for H3AP13 as seed ortholog is 100%.
Bootstrap support for L0PD68 as seed ortholog is 100%.

Group of orthologs #426. Best score 316 bits
Score difference with first non-orthologous sequence - L.chalumnae:138 P.jiroveci:198

H3AT34              	100.00%		L0PB10              	100.00%
Bootstrap support for H3AT34 as seed ortholog is 100%.
Bootstrap support for L0PB10 as seed ortholog is 100%.

Group of orthologs #427. Best score 316 bits
Score difference with first non-orthologous sequence - L.chalumnae:246 P.jiroveci:316

H3ARL5              	100.00%		L0PDL9              	100.00%
Bootstrap support for H3ARL5 as seed ortholog is 100%.
Bootstrap support for L0PDL9 as seed ortholog is 100%.

Group of orthologs #428. Best score 314 bits
Score difference with first non-orthologous sequence - L.chalumnae:314 P.jiroveci:314

H3BIJ5              	100.00%		L0PEM6              	100.00%
H2ZSR3              	70.55%		
H2ZYX8              	48.71%		
Bootstrap support for H3BIJ5 as seed ortholog is 100%.
Bootstrap support for L0PEM6 as seed ortholog is 100%.

Group of orthologs #429. Best score 314 bits
Score difference with first non-orthologous sequence - L.chalumnae:26 P.jiroveci:314

H3A4A6              	100.00%		L0PGR0              	100.00%
H3A108              	62.61%		
Bootstrap support for H3A4A6 as seed ortholog is 67%.
Alternative seed ortholog is H3AAB0 (26 bits away from this cluster)
Bootstrap support for L0PGR0 as seed ortholog is 100%.

Group of orthologs #430. Best score 314 bits
Score difference with first non-orthologous sequence - L.chalumnae:232 P.jiroveci:314

H2ZWS6              	100.00%		L0PBS9              	100.00%
Bootstrap support for H2ZWS6 as seed ortholog is 100%.
Bootstrap support for L0PBS9 as seed ortholog is 100%.

Group of orthologs #431. Best score 314 bits
Score difference with first non-orthologous sequence - L.chalumnae:314 P.jiroveci:314

H3BG48              	100.00%		L0PBD2              	100.00%
Bootstrap support for H3BG48 as seed ortholog is 100%.
Bootstrap support for L0PBD2 as seed ortholog is 100%.

Group of orthologs #432. Best score 312 bits
Score difference with first non-orthologous sequence - L.chalumnae:312 P.jiroveci:312

H3BBH0              	100.00%		L0PDC7              	100.00%
H3ALH7              	10.74%		
Bootstrap support for H3BBH0 as seed ortholog is 100%.
Bootstrap support for L0PDC7 as seed ortholog is 100%.

Group of orthologs #433. Best score 312 bits
Score difference with first non-orthologous sequence - L.chalumnae:245 P.jiroveci:312

H3AE01              	100.00%		L0PB00              	100.00%
Bootstrap support for H3AE01 as seed ortholog is 100%.
Bootstrap support for L0PB00 as seed ortholog is 100%.

Group of orthologs #434. Best score 312 bits
Score difference with first non-orthologous sequence - L.chalumnae:312 P.jiroveci:312

H3ATB7              	100.00%		L0PCV1              	100.00%
Bootstrap support for H3ATB7 as seed ortholog is 100%.
Bootstrap support for L0PCV1 as seed ortholog is 100%.

Group of orthologs #435. Best score 312 bits
Score difference with first non-orthologous sequence - L.chalumnae:312 P.jiroveci:312

H3AZL7              	100.00%		L0PHK3              	100.00%
Bootstrap support for H3AZL7 as seed ortholog is 100%.
Bootstrap support for L0PHK3 as seed ortholog is 100%.

Group of orthologs #436. Best score 312 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:312

H3BFJ3              	100.00%		L0PBM9              	100.00%
Bootstrap support for H3BFJ3 as seed ortholog is 88%.
Bootstrap support for L0PBM9 as seed ortholog is 100%.

Group of orthologs #437. Best score 311 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:311

H3BD96              	100.00%		L0PB24              	100.00%
H3B9J3              	19.94%		
Bootstrap support for H3BD96 as seed ortholog is 99%.
Bootstrap support for L0PB24 as seed ortholog is 100%.

Group of orthologs #438. Best score 311 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:311

H2ZXC3              	100.00%		L0PEJ3              	100.00%
Bootstrap support for H2ZXC3 as seed ortholog is 97%.
Bootstrap support for L0PEJ3 as seed ortholog is 100%.

Group of orthologs #439. Best score 311 bits
Score difference with first non-orthologous sequence - L.chalumnae:311 P.jiroveci:311

H3AEM3              	100.00%		L0PBZ7              	100.00%
Bootstrap support for H3AEM3 as seed ortholog is 100%.
Bootstrap support for L0PBZ7 as seed ortholog is 100%.

Group of orthologs #440. Best score 309 bits
Score difference with first non-orthologous sequence - L.chalumnae:309 P.jiroveci:309

H2ZZN4              	100.00%		L0P9X7              	100.00%
Bootstrap support for H2ZZN4 as seed ortholog is 100%.
Bootstrap support for L0P9X7 as seed ortholog is 100%.

Group of orthologs #441. Best score 309 bits
Score difference with first non-orthologous sequence - L.chalumnae:309 P.jiroveci:309

H2ZXF8              	100.00%		L0PC62              	100.00%
Bootstrap support for H2ZXF8 as seed ortholog is 100%.
Bootstrap support for L0PC62 as seed ortholog is 100%.

Group of orthologs #442. Best score 309 bits
Score difference with first non-orthologous sequence - L.chalumnae:309 P.jiroveci:309

H3AB87              	100.00%		L0P9X4              	100.00%
Bootstrap support for H3AB87 as seed ortholog is 100%.
Bootstrap support for L0P9X4 as seed ortholog is 100%.

Group of orthologs #443. Best score 309 bits
Score difference with first non-orthologous sequence - L.chalumnae:218 P.jiroveci:259

H3AI52              	100.00%		L0PE04              	100.00%
Bootstrap support for H3AI52 as seed ortholog is 100%.
Bootstrap support for L0PE04 as seed ortholog is 100%.

Group of orthologs #444. Best score 308 bits
Score difference with first non-orthologous sequence - L.chalumnae:219 P.jiroveci:308

H3A313              	100.00%		L0P9Z7              	100.00%
H3AG95              	50.34%		
Bootstrap support for H3A313 as seed ortholog is 99%.
Bootstrap support for L0P9Z7 as seed ortholog is 100%.

Group of orthologs #445. Best score 307 bits
Score difference with first non-orthologous sequence - L.chalumnae:243 P.jiroveci:307

H3BAB0              	100.00%		L0PEP1              	100.00%
H3BHN8              	53.79%		L0PIJ3              	81.17%
Bootstrap support for H3BAB0 as seed ortholog is 100%.
Bootstrap support for L0PEP1 as seed ortholog is 100%.

Group of orthologs #446. Best score 307 bits
Score difference with first non-orthologous sequence - L.chalumnae:191 P.jiroveci:307

H3B3T1              	100.00%		L0PBI2              	100.00%
Bootstrap support for H3B3T1 as seed ortholog is 99%.
Bootstrap support for L0PBI2 as seed ortholog is 100%.

Group of orthologs #447. Best score 307 bits
Score difference with first non-orthologous sequence - L.chalumnae:213 P.jiroveci:307

M3XJN0              	100.00%		L0PFP2              	100.00%
Bootstrap support for M3XJN0 as seed ortholog is 100%.
Bootstrap support for L0PFP2 as seed ortholog is 100%.

Group of orthologs #448. Best score 307 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:307

M3XHM2              	100.00%		L0PH80              	100.00%
Bootstrap support for M3XHM2 as seed ortholog is 100%.
Bootstrap support for L0PH80 as seed ortholog is 100%.

Group of orthologs #449. Best score 306 bits
Score difference with first non-orthologous sequence - L.chalumnae:222 P.jiroveci:306

H2ZZV4              	100.00%		L0PG89              	100.00%
H3B4C1              	38.72%		
H3B1M9              	13.97%		
H3ABJ7              	11.78%		
H3A5Z4              	8.18%		
Bootstrap support for H2ZZV4 as seed ortholog is 100%.
Bootstrap support for L0PG89 as seed ortholog is 100%.

Group of orthologs #450. Best score 306 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:306

H2ZSG1              	100.00%		L0PD18              	100.00%
Bootstrap support for H2ZSG1 as seed ortholog is 97%.
Bootstrap support for L0PD18 as seed ortholog is 100%.

Group of orthologs #451. Best score 306 bits
Score difference with first non-orthologous sequence - L.chalumnae:103 P.jiroveci:206

H3ALG6              	100.00%		L0PB70              	100.00%
Bootstrap support for H3ALG6 as seed ortholog is 99%.
Bootstrap support for L0PB70 as seed ortholog is 100%.

Group of orthologs #452. Best score 305 bits
Score difference with first non-orthologous sequence - L.chalumnae:305 P.jiroveci:305

H3AB41              	100.00%		L0PD03              	100.00%
Bootstrap support for H3AB41 as seed ortholog is 100%.
Bootstrap support for L0PD03 as seed ortholog is 100%.

Group of orthologs #453. Best score 305 bits
Score difference with first non-orthologous sequence - L.chalumnae:305 P.jiroveci:305

H3AHH4              	100.00%		L0PF30              	100.00%
Bootstrap support for H3AHH4 as seed ortholog is 100%.
Bootstrap support for L0PF30 as seed ortholog is 100%.

Group of orthologs #454. Best score 305 bits
Score difference with first non-orthologous sequence - L.chalumnae:305 P.jiroveci:305

H3B9L1              	100.00%		L0P9G9              	100.00%
Bootstrap support for H3B9L1 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #455. Best score 302 bits
Score difference with first non-orthologous sequence - L.chalumnae:302 P.jiroveci:302

H2ZUH4              	100.00%		L0PDV1              	100.00%
Bootstrap support for H2ZUH4 as seed ortholog is 100%.
Bootstrap support for L0PDV1 as seed ortholog is 100%.

Group of orthologs #456. Best score 302 bits
Score difference with first non-orthologous sequence - L.chalumnae:302 P.jiroveci:302

H3A4C1              	100.00%		L0PI09              	100.00%
Bootstrap support for H3A4C1 as seed ortholog is 100%.
Bootstrap support for L0PI09 as seed ortholog is 100%.

Group of orthologs #457. Best score 301 bits
Score difference with first non-orthologous sequence - L.chalumnae:301 P.jiroveci:301

H2ZY92              	100.00%		L0PDY1              	100.00%
H3APQ7              	60.71%		
H3ACW3              	51.89%		
Bootstrap support for H2ZY92 as seed ortholog is 100%.
Bootstrap support for L0PDY1 as seed ortholog is 100%.

Group of orthologs #458. Best score 300 bits
Score difference with first non-orthologous sequence - L.chalumnae:300 P.jiroveci:300

H3AM32              	100.00%		L0PFE1              	100.00%
H2ZS30              	14.98%		
Bootstrap support for H3AM32 as seed ortholog is 100%.
Bootstrap support for L0PFE1 as seed ortholog is 100%.

Group of orthologs #459. Best score 300 bits
Score difference with first non-orthologous sequence - L.chalumnae:300 P.jiroveci:300

H3BI26              	100.00%		L0PEB1              	100.00%
H3BEK4              	48.12%		
Bootstrap support for H3BI26 as seed ortholog is 100%.
Bootstrap support for L0PEB1 as seed ortholog is 100%.

Group of orthologs #460. Best score 300 bits
Score difference with first non-orthologous sequence - L.chalumnae:300 P.jiroveci:300

H3AFR1              	100.00%		L0P7I8              	100.00%
Bootstrap support for H3AFR1 as seed ortholog is 100%.
Bootstrap support for L0P7I8 as seed ortholog is 100%.

Group of orthologs #461. Best score 300 bits
Score difference with first non-orthologous sequence - L.chalumnae:47 P.jiroveci:70

H3B420              	100.00%		L0PA26              	100.00%
Bootstrap support for H3B420 as seed ortholog is 93%.
Bootstrap support for L0PA26 as seed ortholog is 98%.

Group of orthologs #462. Best score 300 bits
Score difference with first non-orthologous sequence - L.chalumnae:300 P.jiroveci:300

H3B2C3              	100.00%		L0PFZ0              	100.00%
Bootstrap support for H3B2C3 as seed ortholog is 100%.
Bootstrap support for L0PFZ0 as seed ortholog is 100%.

Group of orthologs #463. Best score 300 bits
Score difference with first non-orthologous sequence - L.chalumnae:300 P.jiroveci:300

H3BB10              	100.00%		L0PBY2              	100.00%
Bootstrap support for H3BB10 as seed ortholog is 100%.
Bootstrap support for L0PBY2 as seed ortholog is 100%.

Group of orthologs #464. Best score 299 bits
Score difference with first non-orthologous sequence - L.chalumnae:299 P.jiroveci:299

H3BB08              	100.00%		L0PF98              	100.00%
H3A5E0              	38.09%		
Bootstrap support for H3BB08 as seed ortholog is 100%.
Bootstrap support for L0PF98 as seed ortholog is 100%.

Group of orthologs #465. Best score 299 bits
Score difference with first non-orthologous sequence - L.chalumnae:129 P.jiroveci:70

H3B5L6              	100.00%		L0PA63              	100.00%
Bootstrap support for H3B5L6 as seed ortholog is 98%.
Bootstrap support for L0PA63 as seed ortholog is 85%.

Group of orthologs #466. Best score 299 bits
Score difference with first non-orthologous sequence - L.chalumnae:166 P.jiroveci:203

H3BBW4              	100.00%		L0P966              	100.00%
Bootstrap support for H3BBW4 as seed ortholog is 99%.
Bootstrap support for L0P966 as seed ortholog is 99%.

Group of orthologs #467. Best score 299 bits
Score difference with first non-orthologous sequence - L.chalumnae:299 P.jiroveci:299

H3B6A3              	100.00%		L0PF83              	100.00%
Bootstrap support for H3B6A3 as seed ortholog is 100%.
Bootstrap support for L0PF83 as seed ortholog is 100%.

Group of orthologs #468. Best score 297 bits
Score difference with first non-orthologous sequence - L.chalumnae:297 P.jiroveci:297

H3AJU8              	100.00%		L0PDI7              	100.00%
Bootstrap support for H3AJU8 as seed ortholog is 100%.
Bootstrap support for L0PDI7 as seed ortholog is 100%.

Group of orthologs #469. Best score 297 bits
Score difference with first non-orthologous sequence - L.chalumnae:297 P.jiroveci:297

H3ANS2              	100.00%		L0PFI8              	100.00%
Bootstrap support for H3ANS2 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #470. Best score 297 bits
Score difference with first non-orthologous sequence - L.chalumnae:297 P.jiroveci:297

H3ARI0              	100.00%		L0PHG9              	100.00%
Bootstrap support for H3ARI0 as seed ortholog is 100%.
Bootstrap support for L0PHG9 as seed ortholog is 100%.

Group of orthologs #471. Best score 297 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:43

H3BBX6              	100.00%		L0PD71              	100.00%
Bootstrap support for H3BBX6 as seed ortholog is 97%.
Bootstrap support for L0PD71 as seed ortholog is 89%.

Group of orthologs #472. Best score 297 bits
Score difference with first non-orthologous sequence - L.chalumnae:297 P.jiroveci:55

H3BGU9              	100.00%		L0PAM1              	100.00%
Bootstrap support for H3BGU9 as seed ortholog is 100%.
Bootstrap support for L0PAM1 as seed ortholog is 92%.

Group of orthologs #473. Best score 295 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:245

H3AK24              	100.00%		L0P8I7              	100.00%
H3B7M8              	100.00%		
Bootstrap support for H3AK24 as seed ortholog is 99%.
Bootstrap support for H3B7M8 as seed ortholog is 99%.
Bootstrap support for L0P8I7 as seed ortholog is 100%.

Group of orthologs #474. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:294 P.jiroveci:294

H3AD09              	100.00%		L0PDT4              	100.00%
H3BIN8              	53.83%		
Bootstrap support for H3AD09 as seed ortholog is 100%.
Bootstrap support for L0PDT4 as seed ortholog is 100%.

Group of orthologs #475. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:188

H3B4I0              	100.00%		L0P8B4              	100.00%
H3A6F0              	35.56%		
Bootstrap support for H3B4I0 as seed ortholog is 97%.
Bootstrap support for L0P8B4 as seed ortholog is 100%.

Group of orthologs #476. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:247 P.jiroveci:243

H2ZUN6              	100.00%		L0P8I1              	100.00%
Bootstrap support for H2ZUN6 as seed ortholog is 100%.
Bootstrap support for L0P8I1 as seed ortholog is 100%.

Group of orthologs #477. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:212 P.jiroveci:294

H3B444              	100.00%		L0PEM3              	100.00%
Bootstrap support for H3B444 as seed ortholog is 100%.
Bootstrap support for L0PEM3 as seed ortholog is 100%.

Group of orthologs #478. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:294 P.jiroveci:294

H3BD20              	100.00%		L0PCX5              	100.00%
Bootstrap support for H3BD20 as seed ortholog is 100%.
Bootstrap support for L0PCX5 as seed ortholog is 100%.

Group of orthologs #479. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:192 P.jiroveci:244

H3BAC1              	100.00%		L0PFE0              	100.00%
Bootstrap support for H3BAC1 as seed ortholog is 100%.
Bootstrap support for L0PFE0 as seed ortholog is 100%.

Group of orthologs #480. Best score 294 bits
Score difference with first non-orthologous sequence - L.chalumnae:294 P.jiroveci:294

H3BAQ1              	100.00%		L0PG44              	100.00%
Bootstrap support for H3BAQ1 as seed ortholog is 100%.
Bootstrap support for L0PG44 as seed ortholog is 100%.

Group of orthologs #481. Best score 293 bits
Score difference with first non-orthologous sequence - L.chalumnae:293 P.jiroveci:293

H2ZSD4              	100.00%		L0PBN2              	100.00%
Bootstrap support for H2ZSD4 as seed ortholog is 100%.
Bootstrap support for L0PBN2 as seed ortholog is 100%.

Group of orthologs #482. Best score 293 bits
Score difference with first non-orthologous sequence - L.chalumnae:293 P.jiroveci:293

H3BAS9              	100.00%		L0PEY2              	100.00%
Bootstrap support for H3BAS9 as seed ortholog is 100%.
Bootstrap support for L0PEY2 as seed ortholog is 100%.

Group of orthologs #483. Best score 292 bits
Score difference with first non-orthologous sequence - L.chalumnae:239 P.jiroveci:292

H3A2Y2              	100.00%		L0PBT9              	100.00%
                    	       		L0P9Y0              	42.27%
Bootstrap support for H3A2Y2 as seed ortholog is 100%.
Bootstrap support for L0PBT9 as seed ortholog is 100%.

Group of orthologs #484. Best score 292 bits
Score difference with first non-orthologous sequence - L.chalumnae:292 P.jiroveci:292

H3AVZ1              	100.00%		L0PAP4              	100.00%
H3AUX6              	52.04%		
Bootstrap support for H3AVZ1 as seed ortholog is 100%.
Bootstrap support for L0PAP4 as seed ortholog is 100%.

Group of orthologs #485. Best score 292 bits
Score difference with first non-orthologous sequence - L.chalumnae:181 P.jiroveci:237

H2ZWB2              	100.00%		L0PG24              	100.00%
Bootstrap support for H2ZWB2 as seed ortholog is 99%.
Bootstrap support for L0PG24 as seed ortholog is 100%.

Group of orthologs #486. Best score 292 bits
Score difference with first non-orthologous sequence - L.chalumnae:208 P.jiroveci:292

H3ADX7              	100.00%		L0PEC0              	100.00%
Bootstrap support for H3ADX7 as seed ortholog is 100%.
Bootstrap support for L0PEC0 as seed ortholog is 100%.

Group of orthologs #487. Best score 292 bits
Score difference with first non-orthologous sequence - L.chalumnae:292 P.jiroveci:292

H3AKV5              	100.00%		L0PB28              	100.00%
Bootstrap support for H3AKV5 as seed ortholog is 100%.
Bootstrap support for L0PB28 as seed ortholog is 100%.

Group of orthologs #488. Best score 291 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:239

H3A8J7              	100.00%		L0PH42              	100.00%
Bootstrap support for H3A8J7 as seed ortholog is 99%.
Bootstrap support for L0PH42 as seed ortholog is 100%.

Group of orthologs #489. Best score 290 bits
Score difference with first non-orthologous sequence - L.chalumnae:30 P.jiroveci:107

H3A259              	100.00%		L0PCJ5              	100.00%
H3A1V4              	64.19%		
Bootstrap support for H3A259 as seed ortholog is 72%.
Alternative seed ortholog is H3A8P1 (30 bits away from this cluster)
Bootstrap support for L0PCJ5 as seed ortholog is 98%.

Group of orthologs #490. Best score 290 bits
Score difference with first non-orthologous sequence - L.chalumnae:290 P.jiroveci:290

H3ABL2              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	71.34%
Bootstrap support for H3ABL2 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #491. Best score 290 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:119

H3AGZ3              	100.00%		L0PBP2              	100.00%
Bootstrap support for H3AGZ3 as seed ortholog is 99%.
Bootstrap support for L0PBP2 as seed ortholog is 99%.

Group of orthologs #492. Best score 290 bits
Score difference with first non-orthologous sequence - L.chalumnae:290 P.jiroveci:290

H3B3Q4              	100.00%		L0PFQ8              	100.00%
Bootstrap support for H3B3Q4 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #493. Best score 290 bits
Score difference with first non-orthologous sequence - L.chalumnae:231 P.jiroveci:290

H3B881              	100.00%		L0PFS8              	100.00%
Bootstrap support for H3B881 as seed ortholog is 100%.
Bootstrap support for L0PFS8 as seed ortholog is 100%.

Group of orthologs #494. Best score 289 bits
Score difference with first non-orthologous sequence - L.chalumnae:244 P.jiroveci:289

H3ARL2              	100.00%		L0P8L5              	100.00%
Bootstrap support for H3ARL2 as seed ortholog is 100%.
Bootstrap support for L0P8L5 as seed ortholog is 100%.

Group of orthologs #495. Best score 289 bits
Score difference with first non-orthologous sequence - L.chalumnae:289 P.jiroveci:289

H3BGD3              	100.00%		L0PHG7              	100.00%
Bootstrap support for H3BGD3 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 100%.

Group of orthologs #496. Best score 288 bits
Score difference with first non-orthologous sequence - L.chalumnae:288 P.jiroveci:288

H3B6W0              	100.00%		L0PDA9              	100.00%
Bootstrap support for H3B6W0 as seed ortholog is 100%.
Bootstrap support for L0PDA9 as seed ortholog is 100%.

Group of orthologs #497. Best score 287 bits
Score difference with first non-orthologous sequence - L.chalumnae:193 P.jiroveci:287

H2ZTG7              	100.00%		L0PBK1              	100.00%
Bootstrap support for H2ZTG7 as seed ortholog is 100%.
Bootstrap support for L0PBK1 as seed ortholog is 100%.

Group of orthologs #498. Best score 287 bits
Score difference with first non-orthologous sequence - L.chalumnae:198 P.jiroveci:287

H2ZVJ5              	100.00%		L0PBQ9              	100.00%
Bootstrap support for H2ZVJ5 as seed ortholog is 100%.
Bootstrap support for L0PBQ9 as seed ortholog is 100%.

Group of orthologs #499. Best score 287 bits
Score difference with first non-orthologous sequence - L.chalumnae:287 P.jiroveci:287

H3A9S8              	100.00%		L0PG43              	100.00%
Bootstrap support for H3A9S8 as seed ortholog is 100%.
Bootstrap support for L0PG43 as seed ortholog is 100%.

Group of orthologs #500. Best score 286 bits
Score difference with first non-orthologous sequence - L.chalumnae:156 P.jiroveci:286

H3BB87              	100.00%		L0P9F6              	100.00%
H3ADX1              	46.50%		
H3AL16              	44.26%		
H3AR27              	43.98%		
Bootstrap support for H3BB87 as seed ortholog is 100%.
Bootstrap support for L0P9F6 as seed ortholog is 100%.

Group of orthologs #501. Best score 286 bits
Score difference with first non-orthologous sequence - L.chalumnae:162 P.jiroveci:286

H3A030              	100.00%		L0PBM0              	100.00%
H3A370              	5.08%		
Bootstrap support for H3A030 as seed ortholog is 99%.
Bootstrap support for L0PBM0 as seed ortholog is 100%.

Group of orthologs #502. Best score 286 bits
Score difference with first non-orthologous sequence - L.chalumnae:286 P.jiroveci:286

H3AV80              	100.00%		L0P861              	100.00%
H2ZSN5              	58.90%		
Bootstrap support for H3AV80 as seed ortholog is 100%.
Bootstrap support for L0P861 as seed ortholog is 100%.

Group of orthologs #503. Best score 286 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:286

H3A5R8              	100.00%		L0PHJ3              	100.00%
Bootstrap support for H3A5R8 as seed ortholog is 100%.
Bootstrap support for L0PHJ3 as seed ortholog is 100%.

Group of orthologs #504. Best score 285 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:285

H2ZX24              	100.00%		L0PEG2              	100.00%
Bootstrap support for H2ZX24 as seed ortholog is 99%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #505. Best score 285 bits
Score difference with first non-orthologous sequence - L.chalumnae:215 P.jiroveci:285

H3A1U1              	100.00%		L0PBH8              	100.00%
Bootstrap support for H3A1U1 as seed ortholog is 100%.
Bootstrap support for L0PBH8 as seed ortholog is 100%.

Group of orthologs #506. Best score 285 bits
Score difference with first non-orthologous sequence - L.chalumnae:285 P.jiroveci:285

H2ZYP3              	100.00%		L0PFX9              	100.00%
Bootstrap support for H2ZYP3 as seed ortholog is 100%.
Bootstrap support for L0PFX9 as seed ortholog is 100%.

Group of orthologs #507. Best score 284 bits
Score difference with first non-orthologous sequence - L.chalumnae:29 P.jiroveci:98

H3ACB8              	100.00%		L0PB47              	100.00%
H3AN70              	41.86%		
Bootstrap support for H3ACB8 as seed ortholog is 80%.
Bootstrap support for L0PB47 as seed ortholog is 99%.

Group of orthologs #508. Best score 284 bits
Score difference with first non-orthologous sequence - L.chalumnae:284 P.jiroveci:284

H2ZRP6              	100.00%		L0PHL3              	100.00%
Bootstrap support for H2ZRP6 as seed ortholog is 100%.
Bootstrap support for L0PHL3 as seed ortholog is 100%.

Group of orthologs #509. Best score 283 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:183

H3A6J2              	100.00%		L0PC59              	100.00%
H3BH91              	85.90%		
Bootstrap support for H3A6J2 as seed ortholog is 99%.
Bootstrap support for L0PC59 as seed ortholog is 100%.

Group of orthologs #510. Best score 282 bits
Score difference with first non-orthologous sequence - L.chalumnae:282 P.jiroveci:282

H3A5L1              	100.00%		L0PGF2              	100.00%
H3BBD3              	37.31%		
Bootstrap support for H3A5L1 as seed ortholog is 100%.
Bootstrap support for L0PGF2 as seed ortholog is 100%.

Group of orthologs #511. Best score 282 bits
Score difference with first non-orthologous sequence - L.chalumnae:282 P.jiroveci:282

H3AUZ2              	100.00%		L0PBD0              	100.00%
H2ZUK3              	39.07%		
Bootstrap support for H3AUZ2 as seed ortholog is 100%.
Bootstrap support for L0PBD0 as seed ortholog is 100%.

Group of orthologs #512. Best score 282 bits
Score difference with first non-orthologous sequence - L.chalumnae:282 P.jiroveci:282

H3BGW8              	100.00%		L0PAJ2              	100.00%
Bootstrap support for H3BGW8 as seed ortholog is 100%.
Bootstrap support for L0PAJ2 as seed ortholog is 100%.

Group of orthologs #513. Best score 281 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:281

H2ZWI0              	100.00%		L0PA00              	100.00%
Bootstrap support for H2ZWI0 as seed ortholog is 99%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #514. Best score 280 bits
Score difference with first non-orthologous sequence - L.chalumnae:280 P.jiroveci:280

H3AB50              	100.00%		L0PBE0              	100.00%
H3AJQ2              	63.87%		
Bootstrap support for H3AB50 as seed ortholog is 100%.
Bootstrap support for L0PBE0 as seed ortholog is 100%.

Group of orthologs #515. Best score 280 bits
Score difference with first non-orthologous sequence - L.chalumnae:280 P.jiroveci:280

M3XK92              	100.00%		L0P9C4              	100.00%
M3XK49              	65.37%		
Bootstrap support for M3XK92 as seed ortholog is 100%.
Bootstrap support for L0P9C4 as seed ortholog is 100%.

Group of orthologs #516. Best score 280 bits
Score difference with first non-orthologous sequence - L.chalumnae:280 P.jiroveci:280

H3BAY6              	100.00%		L0P7Z6              	100.00%
Bootstrap support for H3BAY6 as seed ortholog is 100%.
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #517. Best score 280 bits
Score difference with first non-orthologous sequence - L.chalumnae:280 P.jiroveci:280

H3BC11              	100.00%		L0PEG1              	100.00%
Bootstrap support for H3BC11 as seed ortholog is 100%.
Bootstrap support for L0PEG1 as seed ortholog is 100%.

Group of orthologs #518. Best score 280 bits
Score difference with first non-orthologous sequence - L.chalumnae:280 P.jiroveci:280

M3XGI7              	100.00%		L0P9I2              	100.00%
Bootstrap support for M3XGI7 as seed ortholog is 100%.
Bootstrap support for L0P9I2 as seed ortholog is 100%.

Group of orthologs #519. Best score 279 bits
Score difference with first non-orthologous sequence - L.chalumnae:279 P.jiroveci:279

H3AU52              	100.00%		L0PB03              	100.00%
H3A6D9              	26.67%		
Bootstrap support for H3AU52 as seed ortholog is 100%.
Bootstrap support for L0PB03 as seed ortholog is 100%.

Group of orthologs #520. Best score 278 bits
Score difference with first non-orthologous sequence - L.chalumnae:278 P.jiroveci:278

H3B9E7              	100.00%		L0PA65              	100.00%
Bootstrap support for H3B9E7 as seed ortholog is 100%.
Bootstrap support for L0PA65 as seed ortholog is 100%.

Group of orthologs #521. Best score 278 bits
Score difference with first non-orthologous sequence - L.chalumnae:278 P.jiroveci:278

H3BGJ8              	100.00%		L0P870              	100.00%
Bootstrap support for H3BGJ8 as seed ortholog is 100%.
Bootstrap support for L0P870 as seed ortholog is 100%.

Group of orthologs #522. Best score 278 bits
Score difference with first non-orthologous sequence - L.chalumnae:278 P.jiroveci:278

H3BFY7              	100.00%		L0P9T5              	100.00%
Bootstrap support for H3BFY7 as seed ortholog is 100%.
Bootstrap support for L0P9T5 as seed ortholog is 100%.

Group of orthologs #523. Best score 277 bits
Score difference with first non-orthologous sequence - L.chalumnae:277 P.jiroveci:277

H3ALH2              	100.00%		L0PEY5              	100.00%
Bootstrap support for H3ALH2 as seed ortholog is 100%.
Bootstrap support for L0PEY5 as seed ortholog is 100%.

Group of orthologs #524. Best score 277 bits
Score difference with first non-orthologous sequence - L.chalumnae:124 P.jiroveci:277

H3B8Z3              	100.00%		L0PB86              	100.00%
Bootstrap support for H3B8Z3 as seed ortholog is 99%.
Bootstrap support for L0PB86 as seed ortholog is 100%.

Group of orthologs #525. Best score 277 bits
Score difference with first non-orthologous sequence - L.chalumnae:277 P.jiroveci:277

H3BGJ4              	100.00%		L0P7Q3              	100.00%
Bootstrap support for H3BGJ4 as seed ortholog is 100%.
Bootstrap support for L0P7Q3 as seed ortholog is 100%.

Group of orthologs #526. Best score 274 bits
Score difference with first non-orthologous sequence - L.chalumnae:24 P.jiroveci:41

H3AZG1              	100.00%		L0P6X2              	100.00%
H3A9B4              	51.64%		
M3XH48              	13.11%		
H3AUY0              	13.11%		
Bootstrap support for H3AZG1 as seed ortholog is 82%.
Bootstrap support for L0P6X2 as seed ortholog is 93%.

Group of orthologs #527. Best score 274 bits
Score difference with first non-orthologous sequence - L.chalumnae:57 P.jiroveci:274

H3B5T0              	100.00%		L0PCJ2              	100.00%
H3A4V8              	72.22%		
H3B232              	19.84%		
Bootstrap support for H3B5T0 as seed ortholog is 97%.
Bootstrap support for L0PCJ2 as seed ortholog is 100%.

Group of orthologs #528. Best score 274 bits
Score difference with first non-orthologous sequence - L.chalumnae:274 P.jiroveci:274

H3A1U0              	100.00%		L0PA55              	100.00%
Bootstrap support for H3A1U0 as seed ortholog is 100%.
Bootstrap support for L0PA55 as seed ortholog is 100%.

Group of orthologs #529. Best score 274 bits
Score difference with first non-orthologous sequence - L.chalumnae:274 P.jiroveci:274

H3B1D7              	100.00%		L0P9K9              	100.00%
Bootstrap support for H3B1D7 as seed ortholog is 100%.
Bootstrap support for L0P9K9 as seed ortholog is 100%.

Group of orthologs #530. Best score 273 bits
Score difference with first non-orthologous sequence - L.chalumnae:273 P.jiroveci:273

H3A6D1              	100.00%		L0P9T2              	100.00%
H3ASN3              	31.76%		
Bootstrap support for H3A6D1 as seed ortholog is 100%.
Bootstrap support for L0P9T2 as seed ortholog is 100%.

Group of orthologs #531. Best score 272 bits
Score difference with first non-orthologous sequence - L.chalumnae:69 P.jiroveci:29

H3B6Z1              	100.00%		L0PAI9              	100.00%
M3XIR1              	60.42%		
H3B688              	25.76%		
H3A5S7              	17.23%		
H2ZUR2              	16.67%		
H3AMV8              	13.26%		
Bootstrap support for H3B6Z1 as seed ortholog is 97%.
Bootstrap support for L0PAI9 as seed ortholog is 79%.

Group of orthologs #532. Best score 272 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:161

H3BIB4              	100.00%		L0P9E4              	100.00%
H3ANL1              	63.16%		
H3BES7              	60.53%		
H3BIB3              	49.12%		
H3B6E2              	26.32%		
Bootstrap support for H3BIB4 as seed ortholog is 99%.
Bootstrap support for L0P9E4 as seed ortholog is 100%.

Group of orthologs #533. Best score 272 bits
Score difference with first non-orthologous sequence - L.chalumnae:40 P.jiroveci:89

H3ANI9              	100.00%		L0PDD3              	100.00%
H3AND5              	78.21%		
Bootstrap support for H3ANI9 as seed ortholog is 93%.
Bootstrap support for L0PDD3 as seed ortholog is 99%.

Group of orthologs #534. Best score 272 bits
Score difference with first non-orthologous sequence - L.chalumnae:272 P.jiroveci:272

H2ZYA3              	100.00%		L0P9W3              	100.00%
Bootstrap support for H2ZYA3 as seed ortholog is 100%.
Bootstrap support for L0P9W3 as seed ortholog is 100%.

Group of orthologs #535. Best score 271 bits
Score difference with first non-orthologous sequence - L.chalumnae:126 P.jiroveci:214

H3B1V4              	100.00%		L0PGP6              	100.00%
H3A850              	50.68%		
H3AFA5              	42.57%		
Bootstrap support for H3B1V4 as seed ortholog is 100%.
Bootstrap support for L0PGP6 as seed ortholog is 100%.

Group of orthologs #536. Best score 271 bits
Score difference with first non-orthologous sequence - L.chalumnae:271 P.jiroveci:271

H3AX99              	100.00%		L0PE17              	100.00%
M3XGH3              	40.44%		
Bootstrap support for H3AX99 as seed ortholog is 100%.
Bootstrap support for L0PE17 as seed ortholog is 100%.

Group of orthologs #537. Best score 271 bits
Score difference with first non-orthologous sequence - L.chalumnae:271 P.jiroveci:271

H3AWI5              	100.00%		L0PDJ2              	100.00%
Bootstrap support for H3AWI5 as seed ortholog is 100%.
Bootstrap support for L0PDJ2 as seed ortholog is 100%.

Group of orthologs #538. Best score 271 bits
Score difference with first non-orthologous sequence - L.chalumnae:93 P.jiroveci:271

H3BBY4              	100.00%		L0PAD9              	100.00%
Bootstrap support for H3BBY4 as seed ortholog is 99%.
Bootstrap support for L0PAD9 as seed ortholog is 100%.

Group of orthologs #539. Best score 270 bits
Score difference with first non-orthologous sequence - L.chalumnae:53 P.jiroveci:32

M3XIJ9              	100.00%		L0PCM1              	100.00%
H2ZTT8              	41.92%		
Bootstrap support for M3XIJ9 as seed ortholog is 94%.
Bootstrap support for L0PCM1 as seed ortholog is 81%.

Group of orthologs #540. Best score 270 bits
Score difference with first non-orthologous sequence - L.chalumnae:270 P.jiroveci:270

H2ZV09              	100.00%		L0PB61              	100.00%
Bootstrap support for H2ZV09 as seed ortholog is 100%.
Bootstrap support for L0PB61 as seed ortholog is 100%.

Group of orthologs #541. Best score 270 bits
Score difference with first non-orthologous sequence - L.chalumnae:270 P.jiroveci:270

H3AFT5              	100.00%		L0PAQ1              	100.00%
Bootstrap support for H3AFT5 as seed ortholog is 100%.
Bootstrap support for L0PAQ1 as seed ortholog is 100%.

Group of orthologs #542. Best score 268 bits
Score difference with first non-orthologous sequence - L.chalumnae:268 P.jiroveci:268

H2ZY28              	100.00%		L0PE74              	100.00%
H3BB88              	45.85%		
Bootstrap support for H2ZY28 as seed ortholog is 100%.
Bootstrap support for L0PE74 as seed ortholog is 100%.

Group of orthologs #543. Best score 268 bits
Score difference with first non-orthologous sequence - L.chalumnae:268 P.jiroveci:268

H3AUQ6              	100.00%		L0P7W4              	100.00%
Bootstrap support for H3AUQ6 as seed ortholog is 100%.
Bootstrap support for L0P7W4 as seed ortholog is 100%.

Group of orthologs #544. Best score 267 bits
Score difference with first non-orthologous sequence - L.chalumnae:142 P.jiroveci:267

H3AM73              	100.00%		L0PA72              	100.00%
Bootstrap support for H3AM73 as seed ortholog is 99%.
Bootstrap support for L0PA72 as seed ortholog is 100%.

Group of orthologs #545. Best score 267 bits
Score difference with first non-orthologous sequence - L.chalumnae:171 P.jiroveci:267

H3AWG7              	100.00%		L0PAL2              	100.00%
Bootstrap support for H3AWG7 as seed ortholog is 100%.
Bootstrap support for L0PAL2 as seed ortholog is 100%.

Group of orthologs #546. Best score 266 bits
Score difference with first non-orthologous sequence - L.chalumnae:154 P.jiroveci:132

H3ANP9              	100.00%		L0PDB7              	100.00%
Bootstrap support for H3ANP9 as seed ortholog is 99%.
Bootstrap support for L0PDB7 as seed ortholog is 99%.

Group of orthologs #547. Best score 265 bits
Score difference with first non-orthologous sequence - L.chalumnae:265 P.jiroveci:265

H3BF19              	100.00%		L0PF79              	100.00%
Bootstrap support for H3BF19 as seed ortholog is 100%.
Bootstrap support for L0PF79 as seed ortholog is 100%.

Group of orthologs #548. Best score 264 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:264

H3AU68              	100.00%		L0PDR6              	100.00%
H3ARC4              	81.23%		
H3A1I1              	79.64%		
Bootstrap support for H3AU68 as seed ortholog is 99%.
Bootstrap support for L0PDR6 as seed ortholog is 100%.

Group of orthologs #549. Best score 264 bits
Score difference with first non-orthologous sequence - L.chalumnae:264 P.jiroveci:264

H2ZU07              	100.00%		L0PFU1              	100.00%
Bootstrap support for H2ZU07 as seed ortholog is 100%.
Bootstrap support for L0PFU1 as seed ortholog is 100%.

Group of orthologs #550. Best score 264 bits
Score difference with first non-orthologous sequence - L.chalumnae:264 P.jiroveci:264

H3BEB0              	100.00%		L0PGV8              	100.00%
Bootstrap support for H3BEB0 as seed ortholog is 100%.
Bootstrap support for L0PGV8 as seed ortholog is 100%.

Group of orthologs #551. Best score 263 bits
Score difference with first non-orthologous sequence - L.chalumnae:263 P.jiroveci:263

H3AHF7              	100.00%		L0PDZ2              	100.00%
Bootstrap support for H3AHF7 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #552. Best score 262 bits
Score difference with first non-orthologous sequence - L.chalumnae:262 P.jiroveci:262

H3B1W4              	100.00%		L0PGD7              	100.00%
H3AAP0              	60.84%		L0PGQ0              	55.49%
H2ZRP5              	9.04%		
Bootstrap support for H3B1W4 as seed ortholog is 100%.
Bootstrap support for L0PGD7 as seed ortholog is 100%.

Group of orthologs #553. Best score 261 bits
Score difference with first non-orthologous sequence - L.chalumnae:194 P.jiroveci:183

H3BIP7              	100.00%		L0PF24              	100.00%
H3B4Y1              	56.76%		
H3AFN0              	50.23%		
H3ACW6              	49.77%		
Bootstrap support for H3BIP7 as seed ortholog is 100%.
Bootstrap support for L0PF24 as seed ortholog is 100%.

Group of orthologs #554. Best score 261 bits
Score difference with first non-orthologous sequence - L.chalumnae:261 P.jiroveci:261

H3AC07              	100.00%		L0P908              	100.00%
                    	       		L0P912              	100.00%
Bootstrap support for H3AC07 as seed ortholog is 100%.
Bootstrap support for L0P908 as seed ortholog is 100%.
Bootstrap support for L0P912 as seed ortholog is 100%.

Group of orthologs #555. Best score 261 bits
Score difference with first non-orthologous sequence - L.chalumnae:261 P.jiroveci:261

H3A1M6              	100.00%		L0P914              	100.00%
Bootstrap support for H3A1M6 as seed ortholog is 100%.
Bootstrap support for L0P914 as seed ortholog is 100%.

Group of orthologs #556. Best score 261 bits
Score difference with first non-orthologous sequence - L.chalumnae:154 P.jiroveci:261

H3ANN4              	100.00%		L0P7P4              	100.00%
Bootstrap support for H3ANN4 as seed ortholog is 100%.
Bootstrap support for L0P7P4 as seed ortholog is 100%.

Group of orthologs #557. Best score 261 bits
Score difference with first non-orthologous sequence - L.chalumnae:261 P.jiroveci:261

H3AXH8              	100.00%		L0PA60              	100.00%
Bootstrap support for H3AXH8 as seed ortholog is 100%.
Bootstrap support for L0PA60 as seed ortholog is 100%.

Group of orthologs #558. Best score 261 bits
Score difference with first non-orthologous sequence - L.chalumnae:261 P.jiroveci:261

H3BGM9              	100.00%		L0PDL6              	100.00%
Bootstrap support for H3BGM9 as seed ortholog is 100%.
Bootstrap support for L0PDL6 as seed ortholog is 100%.

Group of orthologs #559. Best score 260 bits
Score difference with first non-orthologous sequence - L.chalumnae:260 P.jiroveci:260

H3BIG8              	100.00%		L0P723              	100.00%
H3AR22              	19.75%		
Bootstrap support for H3BIG8 as seed ortholog is 100%.
Bootstrap support for L0P723 as seed ortholog is 100%.

Group of orthologs #560. Best score 260 bits
Score difference with first non-orthologous sequence - L.chalumnae:161 P.jiroveci:163

H3A0W8              	100.00%		L0PFK0              	100.00%
Bootstrap support for H3A0W8 as seed ortholog is 99%.
Bootstrap support for L0PFK0 as seed ortholog is 99%.

Group of orthologs #561. Best score 260 bits
Score difference with first non-orthologous sequence - L.chalumnae:153 P.jiroveci:260

H3ANH2              	100.00%		L0PDF2              	100.00%
Bootstrap support for H3ANH2 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #562. Best score 258 bits
Score difference with first non-orthologous sequence - L.chalumnae:49 P.jiroveci:258

H3ATU9              	100.00%		L0PDF9              	100.00%
H3BDZ3              	79.69%		
H3AFI2              	67.55%		
H3BDS0              	46.14%		
H3ARH8              	43.05%		
H3BED5              	38.63%		
H3A6E3              	38.63%		
H3AYB1              	25.61%		
H3ADJ0              	17.22%		
H3ABX1              	10.82%		
H3B3M1              	8.17%		
Bootstrap support for H3ATU9 as seed ortholog is 91%.
Bootstrap support for L0PDF9 as seed ortholog is 100%.

Group of orthologs #563. Best score 258 bits
Score difference with first non-orthologous sequence - L.chalumnae:180 P.jiroveci:258

H3BHG4              	100.00%		L0PET2              	100.00%
H3B1F4              	40.50%		L0PAE5              	84.40%
Bootstrap support for H3BHG4 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 100%.

Group of orthologs #564. Best score 258 bits
Score difference with first non-orthologous sequence - L.chalumnae:258 P.jiroveci:258

H3BD51              	100.00%		L0P9M9              	100.00%
Bootstrap support for H3BD51 as seed ortholog is 100%.
Bootstrap support for L0P9M9 as seed ortholog is 100%.

Group of orthologs #565. Best score 258 bits
Score difference with first non-orthologous sequence - L.chalumnae:258 P.jiroveci:258

M3XH26              	100.00%		L0P9C9              	100.00%
Bootstrap support for M3XH26 as seed ortholog is 100%.
Bootstrap support for L0P9C9 as seed ortholog is 100%.

Group of orthologs #566. Best score 257 bits
Score difference with first non-orthologous sequence - L.chalumnae:257 P.jiroveci:257

H2ZT65              	100.00%		L0P9K4              	100.00%
Bootstrap support for H2ZT65 as seed ortholog is 100%.
Bootstrap support for L0P9K4 as seed ortholog is 100%.

Group of orthologs #567. Best score 256 bits
Score difference with first non-orthologous sequence - L.chalumnae:256 P.jiroveci:187

H3A7U7              	100.00%		L0PCG1              	100.00%
Bootstrap support for H3A7U7 as seed ortholog is 100%.
Bootstrap support for L0PCG1 as seed ortholog is 100%.

Group of orthologs #568. Best score 256 bits
Score difference with first non-orthologous sequence - L.chalumnae:256 P.jiroveci:256

H3AN50              	100.00%		L0PB18              	100.00%
Bootstrap support for H3AN50 as seed ortholog is 100%.
Bootstrap support for L0PB18 as seed ortholog is 100%.

Group of orthologs #569. Best score 256 bits
Score difference with first non-orthologous sequence - L.chalumnae:207 P.jiroveci:256

H3ALU6              	100.00%		L0PFC0              	100.00%
Bootstrap support for H3ALU6 as seed ortholog is 100%.
Bootstrap support for L0PFC0 as seed ortholog is 100%.

Group of orthologs #570. Best score 255 bits
Score difference with first non-orthologous sequence - L.chalumnae:255 P.jiroveci:255

H2ZXN9              	100.00%		L0PES4              	100.00%
Bootstrap support for H2ZXN9 as seed ortholog is 100%.
Bootstrap support for L0PES4 as seed ortholog is 100%.

Group of orthologs #571. Best score 255 bits
Score difference with first non-orthologous sequence - L.chalumnae:255 P.jiroveci:255

H3B0K1              	100.00%		L0P9S7              	100.00%
Bootstrap support for H3B0K1 as seed ortholog is 100%.
Bootstrap support for L0P9S7 as seed ortholog is 100%.

Group of orthologs #572. Best score 253 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:253

H2ZZ08              	100.00%		L0P962              	100.00%
Bootstrap support for H2ZZ08 as seed ortholog is 90%.
Bootstrap support for L0P962 as seed ortholog is 100%.

Group of orthologs #573. Best score 253 bits
Score difference with first non-orthologous sequence - L.chalumnae:147 P.jiroveci:253

H3AH73              	100.00%		L0PCQ6              	100.00%
Bootstrap support for H3AH73 as seed ortholog is 99%.
Bootstrap support for L0PCQ6 as seed ortholog is 100%.

Group of orthologs #574. Best score 252 bits
Score difference with first non-orthologous sequence - L.chalumnae:114 P.jiroveci:252

H3A961              	100.00%		L0P9S5              	100.00%
H3BD34              	74.79%		
H3ACE2              	47.90%		
H2ZVW0              	31.93%		
Bootstrap support for H3A961 as seed ortholog is 100%.
Bootstrap support for L0P9S5 as seed ortholog is 100%.

Group of orthologs #575. Best score 252 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:252

H2ZYS6              	100.00%		L0PDN4              	100.00%
H3B897              	30.82%		
Bootstrap support for H2ZYS6 as seed ortholog is 97%.
Bootstrap support for L0PDN4 as seed ortholog is 100%.

Group of orthologs #576. Best score 252 bits
Score difference with first non-orthologous sequence - L.chalumnae:123 P.jiroveci:252

H3BBE6              	100.00%		L0PF99              	100.00%
H3A120              	25.66%		
Bootstrap support for H3BBE6 as seed ortholog is 99%.
Bootstrap support for L0PF99 as seed ortholog is 100%.

Group of orthologs #577. Best score 252 bits
Score difference with first non-orthologous sequence - L.chalumnae:252 P.jiroveci:252

H3A2U3              	100.00%		L0PAF9              	100.00%
Bootstrap support for H3A2U3 as seed ortholog is 100%.
Bootstrap support for L0PAF9 as seed ortholog is 100%.

Group of orthologs #578. Best score 252 bits
Score difference with first non-orthologous sequence - L.chalumnae:252 P.jiroveci:252

H3AQL2              	100.00%		L0PAM2              	100.00%
Bootstrap support for H3AQL2 as seed ortholog is 100%.
Bootstrap support for L0PAM2 as seed ortholog is 100%.

Group of orthologs #579. Best score 251 bits
Score difference with first non-orthologous sequence - L.chalumnae:251 P.jiroveci:251

H3B0A8              	100.00%		L0P9B8              	100.00%
Bootstrap support for H3B0A8 as seed ortholog is 100%.
Bootstrap support for L0P9B8 as seed ortholog is 100%.

Group of orthologs #580. Best score 250 bits
Score difference with first non-orthologous sequence - L.chalumnae:250 P.jiroveci:202

H3A726              	100.00%		L0PBY9              	100.00%
Bootstrap support for H3A726 as seed ortholog is 100%.
Bootstrap support for L0PBY9 as seed ortholog is 100%.

Group of orthologs #581. Best score 249 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:249

H3AEH1              	100.00%		L0PAG1              	100.00%
Bootstrap support for H3AEH1 as seed ortholog is 99%.
Bootstrap support for L0PAG1 as seed ortholog is 100%.

Group of orthologs #582. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:248 P.jiroveci:248

H3BH26              	100.00%		L0P961              	100.00%
M3XH91              	72.83%		
H3BAS1              	63.52%		
H3BE04              	61.90%		
H3BGA8              	5.43%		
Bootstrap support for H3BH26 as seed ortholog is 100%.
Bootstrap support for L0P961 as seed ortholog is 100%.

Group of orthologs #583. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:182 P.jiroveci:248

H3ABL3              	100.00%		L0P858              	100.00%
                    	       		L0PDX5              	67.70%
Bootstrap support for H3ABL3 as seed ortholog is 100%.
Bootstrap support for L0P858 as seed ortholog is 100%.

Group of orthologs #584. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:248 P.jiroveci:248

H3B231              	100.00%		L0PD38              	100.00%
H3ANX2              	35.58%		
Bootstrap support for H3B231 as seed ortholog is 100%.
Bootstrap support for L0PD38 as seed ortholog is 100%.

Group of orthologs #585. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:248 P.jiroveci:248

H3A7D7              	100.00%		L0P784              	100.00%
Bootstrap support for H3A7D7 as seed ortholog is 100%.
Bootstrap support for L0P784 as seed ortholog is 100%.

Group of orthologs #586. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:248 P.jiroveci:248

H3A915              	100.00%		L0PAG0              	100.00%
Bootstrap support for H3A915 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #587. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:248 P.jiroveci:248

H3AQY0              	100.00%		L0PEN7              	100.00%
Bootstrap support for H3AQY0 as seed ortholog is 100%.
Bootstrap support for L0PEN7 as seed ortholog is 100%.

Group of orthologs #588. Best score 248 bits
Score difference with first non-orthologous sequence - L.chalumnae:162 P.jiroveci:193

H3B5L5              	100.00%		L0PFY7              	100.00%
Bootstrap support for H3B5L5 as seed ortholog is 100%.
Bootstrap support for L0PFY7 as seed ortholog is 100%.

Group of orthologs #589. Best score 247 bits
Score difference with first non-orthologous sequence - L.chalumnae:247 P.jiroveci:247

H3BG01              	100.00%		L0PBV6              	100.00%
H3BE45              	56.50%		
Bootstrap support for H3BG01 as seed ortholog is 100%.
Bootstrap support for L0PBV6 as seed ortholog is 100%.

Group of orthologs #590. Best score 247 bits
Score difference with first non-orthologous sequence - L.chalumnae:247 P.jiroveci:247

H3A401              	100.00%		L0P896              	100.00%
Bootstrap support for H3A401 as seed ortholog is 100%.
Bootstrap support for L0P896 as seed ortholog is 100%.

Group of orthologs #591. Best score 247 bits
Score difference with first non-orthologous sequence - L.chalumnae:183 P.jiroveci:247

H3AYW0              	100.00%		L0PHN0              	100.00%
Bootstrap support for H3AYW0 as seed ortholog is 100%.
Bootstrap support for L0PHN0 as seed ortholog is 100%.

Group of orthologs #592. Best score 246 bits
Score difference with first non-orthologous sequence - L.chalumnae:246 P.jiroveci:246

H3BEE7              	100.00%		L0P9F7              	100.00%
H3B466              	48.58%		L0PGP0              	82.86%
Bootstrap support for H3BEE7 as seed ortholog is 100%.
Bootstrap support for L0P9F7 as seed ortholog is 100%.

Group of orthologs #593. Best score 246 bits
Score difference with first non-orthologous sequence - L.chalumnae:246 P.jiroveci:246

H3ASB1              	100.00%		L0PG68              	100.00%
Bootstrap support for H3ASB1 as seed ortholog is 100%.
Bootstrap support for L0PG68 as seed ortholog is 100%.

Group of orthologs #594. Best score 245 bits
Score difference with first non-orthologous sequence - L.chalumnae:245 P.jiroveci:245

H3ADT7              	100.00%		L0P9G7              	100.00%
H3BDX4              	46.89%		
Bootstrap support for H3ADT7 as seed ortholog is 100%.
Bootstrap support for L0P9G7 as seed ortholog is 100%.

Group of orthologs #595. Best score 245 bits
Score difference with first non-orthologous sequence - L.chalumnae:245 P.jiroveci:245

H3A9F9              	100.00%		L0PB11              	100.00%
Bootstrap support for H3A9F9 as seed ortholog is 100%.
Bootstrap support for L0PB11 as seed ortholog is 100%.

Group of orthologs #596. Best score 245 bits
Score difference with first non-orthologous sequence - L.chalumnae:245 P.jiroveci:245

H3ASP7              	100.00%		L0P949              	100.00%
Bootstrap support for H3ASP7 as seed ortholog is 100%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #597. Best score 244 bits
Score difference with first non-orthologous sequence - L.chalumnae:244 P.jiroveci:244

H3BIF8              	100.00%		L0P9J6              	100.00%
                    	       		L0PH67              	86.67%
Bootstrap support for H3BIF8 as seed ortholog is 100%.
Bootstrap support for L0P9J6 as seed ortholog is 100%.

Group of orthologs #598. Best score 244 bits
Score difference with first non-orthologous sequence - L.chalumnae:244 P.jiroveci:244

H3B2P9              	100.00%		L0PET8              	100.00%
Bootstrap support for H3B2P9 as seed ortholog is 100%.
Bootstrap support for L0PET8 as seed ortholog is 100%.

Group of orthologs #599. Best score 244 bits
Score difference with first non-orthologous sequence - L.chalumnae:244 P.jiroveci:244

H3BAF0              	100.00%		L0P9L7              	100.00%
Bootstrap support for H3BAF0 as seed ortholog is 100%.
Bootstrap support for L0P9L7 as seed ortholog is 100%.

Group of orthologs #600. Best score 243 bits
Score difference with first non-orthologous sequence - L.chalumnae:243 P.jiroveci:243

H3A9M3              	100.00%		L0PAG8              	100.00%
Bootstrap support for H3A9M3 as seed ortholog is 100%.
Bootstrap support for L0PAG8 as seed ortholog is 100%.

Group of orthologs #601. Best score 243 bits
Score difference with first non-orthologous sequence - L.chalumnae:149 P.jiroveci:243

H3BHL9              	100.00%		L0PEF5              	100.00%
Bootstrap support for H3BHL9 as seed ortholog is 100%.
Bootstrap support for L0PEF5 as seed ortholog is 100%.

Group of orthologs #602. Best score 242 bits
Score difference with first non-orthologous sequence - L.chalumnae:242 P.jiroveci:242

H3AEX7              	100.00%		L0P9P0              	100.00%
Bootstrap support for H3AEX7 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #603. Best score 241 bits
Score difference with first non-orthologous sequence - L.chalumnae:241 P.jiroveci:241

H3B2C6              	100.00%		L0P9G0              	100.00%
H3B651              	63.63%		
H3A2R8              	44.27%		
H3BDF5              	43.66%		
H3ACD1              	22.05%		
H3ADV3              	20.83%		
H3BBC6              	19.88%		
H3BIB1              	17.45%		
H3A2I8              	13.11%		
H2ZU77              	12.33%		
H3APZ2              	11.28%		
H3AZ25              	9.81%		
H2ZUJ3              	8.33%		
Bootstrap support for H3B2C6 as seed ortholog is 100%.
Bootstrap support for L0P9G0 as seed ortholog is 100%.

Group of orthologs #604. Best score 240 bits
Score difference with first non-orthologous sequence - L.chalumnae:32 P.jiroveci:189

H3A7H1              	100.00%		L0P876              	100.00%
H2ZRJ5              	11.11%		
Bootstrap support for H3A7H1 as seed ortholog is 89%.
Bootstrap support for L0P876 as seed ortholog is 100%.

Group of orthologs #605. Best score 240 bits
Score difference with first non-orthologous sequence - L.chalumnae:240 P.jiroveci:240

H3AFN1              	100.00%		L0P6P2              	100.00%
H2ZZH3              	5.34%		
Bootstrap support for H3AFN1 as seed ortholog is 100%.
Bootstrap support for L0P6P2 as seed ortholog is 100%.

Group of orthologs #606. Best score 240 bits
Score difference with first non-orthologous sequence - L.chalumnae:240 P.jiroveci:240

H2ZXM1              	100.00%		L0P7H2              	100.00%
Bootstrap support for H2ZXM1 as seed ortholog is 100%.
Bootstrap support for L0P7H2 as seed ortholog is 100%.

Group of orthologs #607. Best score 240 bits
Score difference with first non-orthologous sequence - L.chalumnae:240 P.jiroveci:240

H3ACS3              	100.00%		L0PCY0              	100.00%
Bootstrap support for H3ACS3 as seed ortholog is 100%.
Bootstrap support for L0PCY0 as seed ortholog is 100%.

Group of orthologs #608. Best score 239 bits
Score difference with first non-orthologous sequence - L.chalumnae:239 P.jiroveci:239

H2ZVQ5              	100.00%		L0PAZ5              	100.00%
H3ATG8              	30.45%		
H3AW08              	30.06%		
H3AZR5              	18.84%		
H3AYP0              	18.58%		
Bootstrap support for H2ZVQ5 as seed ortholog is 100%.
Bootstrap support for L0PAZ5 as seed ortholog is 100%.

Group of orthologs #609. Best score 239 bits
Score difference with first non-orthologous sequence - L.chalumnae:167 P.jiroveci:239

H3AMC2              	100.00%		L0PDB9              	100.00%
M3XL56              	29.04%		
Bootstrap support for H3AMC2 as seed ortholog is 99%.
Bootstrap support for L0PDB9 as seed ortholog is 100%.

Group of orthologs #610. Best score 238 bits
Score difference with first non-orthologous sequence - L.chalumnae:144 P.jiroveci:158

H3AY68              	100.00%		L0PFE3              	100.00%
H3B476              	48.89%		
H2ZZJ0              	23.89%		
Bootstrap support for H3AY68 as seed ortholog is 99%.
Bootstrap support for L0PFE3 as seed ortholog is 99%.

Group of orthologs #611. Best score 238 bits
Score difference with first non-orthologous sequence - L.chalumnae:238 P.jiroveci:238

H3ALJ5              	100.00%		L0PCR8              	100.00%
                    	       		L0PH75              	90.88%
Bootstrap support for H3ALJ5 as seed ortholog is 100%.
Bootstrap support for L0PCR8 as seed ortholog is 100%.

Group of orthologs #612. Best score 238 bits
Score difference with first non-orthologous sequence - L.chalumnae:238 P.jiroveci:238

H3A2I6              	100.00%		L0PG93              	100.00%
Bootstrap support for H3A2I6 as seed ortholog is 100%.
Bootstrap support for L0PG93 as seed ortholog is 100%.

Group of orthologs #613. Best score 238 bits
Score difference with first non-orthologous sequence - L.chalumnae:238 P.jiroveci:238

H3BEZ8              	100.00%		L0PGQ4              	100.00%
Bootstrap support for H3BEZ8 as seed ortholog is 100%.
Bootstrap support for L0PGQ4 as seed ortholog is 100%.

Group of orthologs #614. Best score 237 bits
Score difference with first non-orthologous sequence - L.chalumnae:136 P.jiroveci:237

H3AGI3              	100.00%		L0P9F9              	100.00%
H3A858              	89.00%		
Bootstrap support for H3AGI3 as seed ortholog is 100%.
Bootstrap support for L0P9F9 as seed ortholog is 100%.

Group of orthologs #615. Best score 237 bits
Score difference with first non-orthologous sequence - L.chalumnae:237 P.jiroveci:237

H3B108              	100.00%		L0PG10              	100.00%
H3AFW6              	14.77%		
Bootstrap support for H3B108 as seed ortholog is 100%.
Bootstrap support for L0PG10 as seed ortholog is 100%.

Group of orthologs #616. Best score 237 bits
Score difference with first non-orthologous sequence - L.chalumnae:237 P.jiroveci:237

H3AP59              	100.00%		L0P8F0              	100.00%
Bootstrap support for H3AP59 as seed ortholog is 100%.
Bootstrap support for L0P8F0 as seed ortholog is 100%.

Group of orthologs #617. Best score 237 bits
Score difference with first non-orthologous sequence - L.chalumnae:237 P.jiroveci:237

H3AI49              	100.00%		L0PHK5              	100.00%
Bootstrap support for H3AI49 as seed ortholog is 100%.
Bootstrap support for L0PHK5 as seed ortholog is 100%.

Group of orthologs #618. Best score 236 bits
Score difference with first non-orthologous sequence - L.chalumnae:90 P.jiroveci:186

H3B317              	100.00%		L0PA17              	100.00%
Bootstrap support for H3B317 as seed ortholog is 99%.
Bootstrap support for L0PA17 as seed ortholog is 100%.

Group of orthologs #619. Best score 236 bits
Score difference with first non-orthologous sequence - L.chalumnae:236 P.jiroveci:236

H3BEJ6              	100.00%		L0PD44              	100.00%
Bootstrap support for H3BEJ6 as seed ortholog is 100%.
Bootstrap support for L0PD44 as seed ortholog is 100%.

Group of orthologs #620. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:5 P.jiroveci:235

H3B536              	100.00%		L0PC75              	100.00%
H3B4T8              	83.12%		
H3AJ34              	76.88%		
M3XHD4              	24.38%		
H3B4T1              	20.00%		
Bootstrap support for H3B536 as seed ortholog is 60%.
Alternative seed ortholog is H3ABX5 (5 bits away from this cluster)
Bootstrap support for L0PC75 as seed ortholog is 100%.

Group of orthologs #621. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:235

H3BC57              	100.00%		L0PCI8              	100.00%
H3B7S2              	54.66%		
H3B5I8              	37.04%		
Bootstrap support for H3BC57 as seed ortholog is 99%.
Bootstrap support for L0PCI8 as seed ortholog is 100%.

Group of orthologs #622. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:235

H2ZYR2              	100.00%		L0PFZ1              	100.00%
H3B516              	45.14%		
Bootstrap support for H2ZYR2 as seed ortholog is 100%.
Bootstrap support for L0PFZ1 as seed ortholog is 100%.

Group of orthologs #623. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:184

H3B8F7              	100.00%		L0PHH9              	100.00%
M3XGK5              	71.67%		
Bootstrap support for H3B8F7 as seed ortholog is 99%.
Bootstrap support for L0PHH9 as seed ortholog is 100%.

Group of orthologs #624. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:235 P.jiroveci:235

H3BGZ8              	100.00%		L0PEW5              	100.00%
H3B8J2              	27.04%		
Bootstrap support for H3BGZ8 as seed ortholog is 100%.
Bootstrap support for L0PEW5 as seed ortholog is 100%.

Group of orthologs #625. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:235 P.jiroveci:235

H2ZVZ4              	100.00%		L0PEC6              	100.00%
Bootstrap support for H2ZVZ4 as seed ortholog is 100%.
Bootstrap support for L0PEC6 as seed ortholog is 100%.

Group of orthologs #626. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:235 P.jiroveci:235

H3A597              	100.00%		L0PGD6              	100.00%
Bootstrap support for H3A597 as seed ortholog is 100%.
Bootstrap support for L0PGD6 as seed ortholog is 100%.

Group of orthologs #627. Best score 235 bits
Score difference with first non-orthologous sequence - L.chalumnae:174 P.jiroveci:157

H3BBU9              	100.00%		L0P834              	100.00%
Bootstrap support for H3BBU9 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 99%.

Group of orthologs #628. Best score 234 bits
Score difference with first non-orthologous sequence - L.chalumnae:99 P.jiroveci:234

H3AU30              	100.00%		L0PAM8              	100.00%
Bootstrap support for H3AU30 as seed ortholog is 99%.
Bootstrap support for L0PAM8 as seed ortholog is 100%.

Group of orthologs #629. Best score 234 bits
Score difference with first non-orthologous sequence - L.chalumnae:234 P.jiroveci:234

H3B5K8              	100.00%		L0P9K2              	100.00%
Bootstrap support for H3B5K8 as seed ortholog is 100%.
Bootstrap support for L0P9K2 as seed ortholog is 100%.

Group of orthologs #630. Best score 234 bits
Score difference with first non-orthologous sequence - L.chalumnae:234 P.jiroveci:234

H3B677              	100.00%		L0PBP9              	100.00%
Bootstrap support for H3B677 as seed ortholog is 100%.
Bootstrap support for L0PBP9 as seed ortholog is 100%.

Group of orthologs #631. Best score 232 bits
Score difference with first non-orthologous sequence - L.chalumnae:232 P.jiroveci:232

H3BHX9              	100.00%		L0P9G1              	100.00%
Bootstrap support for H3BHX9 as seed ortholog is 100%.
Bootstrap support for L0P9G1 as seed ortholog is 100%.

Group of orthologs #632. Best score 231 bits
Score difference with first non-orthologous sequence - L.chalumnae:231 P.jiroveci:231

H3AGY0              	100.00%		L0PF46              	100.00%
Bootstrap support for H3AGY0 as seed ortholog is 100%.
Bootstrap support for L0PF46 as seed ortholog is 100%.

Group of orthologs #633. Best score 231 bits
Score difference with first non-orthologous sequence - L.chalumnae:231 P.jiroveci:231

H3B751              	100.00%		L0PHL1              	100.00%
Bootstrap support for H3B751 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #634. Best score 230 bits
Score difference with first non-orthologous sequence - L.chalumnae:230 P.jiroveci:230

H3A547              	100.00%		L0PH55              	100.00%
Bootstrap support for H3A547 as seed ortholog is 100%.
Bootstrap support for L0PH55 as seed ortholog is 100%.

Group of orthologs #635. Best score 229 bits
Score difference with first non-orthologous sequence - L.chalumnae:229 P.jiroveci:229

H3AYI5              	100.00%		L0P968              	100.00%
H3ALT7              	6.40%		
Bootstrap support for H3AYI5 as seed ortholog is 100%.
Bootstrap support for L0P968 as seed ortholog is 100%.

Group of orthologs #636. Best score 229 bits
Score difference with first non-orthologous sequence - L.chalumnae:229 P.jiroveci:229

H3AVK8              	100.00%		L0PDI2              	100.00%
Bootstrap support for H3AVK8 as seed ortholog is 100%.
Bootstrap support for L0PDI2 as seed ortholog is 100%.

Group of orthologs #637. Best score 228 bits
Score difference with first non-orthologous sequence - L.chalumnae:52 P.jiroveci:82

H3ADM2              	100.00%		L0PGE5              	100.00%
H3BBI8              	65.52%		
H3A4Z3              	63.22%		
H3BEQ9              	7.47%		
Bootstrap support for H3ADM2 as seed ortholog is 99%.
Bootstrap support for L0PGE5 as seed ortholog is 99%.

Group of orthologs #638. Best score 228 bits
Score difference with first non-orthologous sequence - L.chalumnae:228 P.jiroveci:228

H3B6B2              	100.00%		L0PEM0              	100.00%
H3BAK0              	30.07%		
Bootstrap support for H3B6B2 as seed ortholog is 100%.
Bootstrap support for L0PEM0 as seed ortholog is 100%.

Group of orthologs #639. Best score 228 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:228

H3A2Z0              	100.00%		L0PCG0              	100.00%
Bootstrap support for H3A2Z0 as seed ortholog is 99%.
Bootstrap support for L0PCG0 as seed ortholog is 100%.

Group of orthologs #640. Best score 228 bits
Score difference with first non-orthologous sequence - L.chalumnae:228 P.jiroveci:228

H3AGM5              	100.00%		L0P790              	100.00%
Bootstrap support for H3AGM5 as seed ortholog is 100%.
Bootstrap support for L0P790 as seed ortholog is 100%.

Group of orthologs #641. Best score 228 bits
Score difference with first non-orthologous sequence - L.chalumnae:228 P.jiroveci:228

H3AK52              	100.00%		L0PGY0              	100.00%
Bootstrap support for H3AK52 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #642. Best score 228 bits
Score difference with first non-orthologous sequence - L.chalumnae:228 P.jiroveci:228

H3B6D3              	100.00%		L0PBZ6              	100.00%
Bootstrap support for H3B6D3 as seed ortholog is 100%.
Bootstrap support for L0PBZ6 as seed ortholog is 100%.

Group of orthologs #643. Best score 227 bits
Score difference with first non-orthologous sequence - L.chalumnae:227 P.jiroveci:227

H3AN65              	100.00%		L0PBS5              	100.00%
H3BBR9              	8.22%		
Bootstrap support for H3AN65 as seed ortholog is 100%.
Bootstrap support for L0PBS5 as seed ortholog is 100%.

Group of orthologs #644. Best score 226 bits
Score difference with first non-orthologous sequence - L.chalumnae:226 P.jiroveci:226

H2ZV22              	100.00%		L0P8J0              	100.00%
Bootstrap support for H2ZV22 as seed ortholog is 100%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #645. Best score 225 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:225

H3A723              	100.00%		L0PGL3              	100.00%
H3A0R8              	42.90%		
Bootstrap support for H3A723 as seed ortholog is 98%.
Bootstrap support for L0PGL3 as seed ortholog is 100%.

Group of orthologs #646. Best score 225 bits
Score difference with first non-orthologous sequence - L.chalumnae:35 P.jiroveci:225

H3ASY3              	100.00%		L0P8Q5              	100.00%
Bootstrap support for H3ASY3 as seed ortholog is 76%.
Bootstrap support for L0P8Q5 as seed ortholog is 100%.

Group of orthologs #647. Best score 224 bits
Score difference with first non-orthologous sequence - L.chalumnae:224 P.jiroveci:224

H3ANK7              	100.00%		L0PD58              	100.00%
Bootstrap support for H3ANK7 as seed ortholog is 100%.
Bootstrap support for L0PD58 as seed ortholog is 100%.

Group of orthologs #648. Best score 223 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:223

H3AGJ9              	100.00%		L0P848              	100.00%
H3B996              	40.19%		L0P867              	89.62%
Bootstrap support for H3AGJ9 as seed ortholog is 97%.
Bootstrap support for L0P848 as seed ortholog is 100%.

Group of orthologs #649. Best score 223 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:223

H3AE65              	100.00%		L0PAW4              	100.00%
H3B461              	56.56%		
Bootstrap support for H3AE65 as seed ortholog is 100%.
Bootstrap support for L0PAW4 as seed ortholog is 100%.

Group of orthologs #650. Best score 223 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:223

H3A7I4              	100.00%		L0PCU0              	100.00%
Bootstrap support for H3A7I4 as seed ortholog is 100%.
Bootstrap support for L0PCU0 as seed ortholog is 100%.

Group of orthologs #651. Best score 223 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:223

H3ANB9              	100.00%		L0PE89              	100.00%
Bootstrap support for H3ANB9 as seed ortholog is 100%.
Bootstrap support for L0PE89 as seed ortholog is 100%.

Group of orthologs #652. Best score 223 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:223

H3ARU3              	100.00%		L0PCJ8              	100.00%
Bootstrap support for H3ARU3 as seed ortholog is 100%.
Bootstrap support for L0PCJ8 as seed ortholog is 100%.

Group of orthologs #653. Best score 223 bits
Score difference with first non-orthologous sequence - L.chalumnae:223 P.jiroveci:68

H3BGA5              	100.00%		L0P9N8              	100.00%
Bootstrap support for H3BGA5 as seed ortholog is 100%.
Bootstrap support for L0P9N8 as seed ortholog is 94%.

Group of orthologs #654. Best score 222 bits
Score difference with first non-orthologous sequence - L.chalumnae:222 P.jiroveci:222

H3AEZ0              	100.00%		L0P9N2              	100.00%
Bootstrap support for H3AEZ0 as seed ortholog is 100%.
Bootstrap support for L0P9N2 as seed ortholog is 100%.

Group of orthologs #655. Best score 222 bits
Score difference with first non-orthologous sequence - L.chalumnae:222 P.jiroveci:222

H3AMK4              	100.00%		L0PAE8              	100.00%
Bootstrap support for H3AMK4 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #656. Best score 221 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:163

H3AW20              	100.00%		L0PHW8              	100.00%
H3BB91              	58.29%		
H3ATF1              	56.87%		
H3BBM7              	49.29%		
H3ASP3              	33.65%		
Bootstrap support for H3AW20 as seed ortholog is 100%.
Bootstrap support for L0PHW8 as seed ortholog is 100%.

Group of orthologs #657. Best score 221 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:42

H3BG70              	100.00%		L0PFI0              	100.00%
H3BGR3              	40.55%		
Bootstrap support for H3BG70 as seed ortholog is 98%.
Bootstrap support for L0PFI0 as seed ortholog is 85%.

Group of orthologs #658. Best score 221 bits
Score difference with first non-orthologous sequence - L.chalumnae:221 P.jiroveci:221

H3A124              	100.00%		L0P705              	100.00%
Bootstrap support for H3A124 as seed ortholog is 100%.
Bootstrap support for L0P705 as seed ortholog is 100%.

Group of orthologs #659. Best score 221 bits
Score difference with first non-orthologous sequence - L.chalumnae:221 P.jiroveci:221

H3APT1              	100.00%		L0PDP2              	100.00%
Bootstrap support for H3APT1 as seed ortholog is 100%.
Bootstrap support for L0PDP2 as seed ortholog is 100%.

Group of orthologs #660. Best score 220 bits
Score difference with first non-orthologous sequence - L.chalumnae:220 P.jiroveci:220

H3B6W2              	100.00%		L0PGE7              	100.00%
Bootstrap support for H3B6W2 as seed ortholog is 100%.
Bootstrap support for L0PGE7 as seed ortholog is 100%.

Group of orthologs #661. Best score 219 bits
Score difference with first non-orthologous sequence - L.chalumnae:219 P.jiroveci:219

H3BIS7              	100.00%		L0PHL0              	100.00%
Bootstrap support for H3BIS7 as seed ortholog is 100%.
Bootstrap support for L0PHL0 as seed ortholog is 100%.

Group of orthologs #662. Best score 218 bits
Score difference with first non-orthologous sequence - L.chalumnae:107 P.jiroveci:218

H3AY94              	100.00%		L0PAF0              	100.00%
M3XH90              	50.31%		
Bootstrap support for H3AY94 as seed ortholog is 99%.
Bootstrap support for L0PAF0 as seed ortholog is 100%.

Group of orthologs #663. Best score 218 bits
Score difference with first non-orthologous sequence - L.chalumnae:218 P.jiroveci:218

H3BCQ6              	100.00%		L0PDL5              	100.00%
H3AZT4              	80.60%		
Bootstrap support for H3BCQ6 as seed ortholog is 100%.
Bootstrap support for L0PDL5 as seed ortholog is 100%.

Group of orthologs #664. Best score 218 bits
Score difference with first non-orthologous sequence - L.chalumnae:218 P.jiroveci:218

H3A6N9              	100.00%		L0P9R7              	100.00%
Bootstrap support for H3A6N9 as seed ortholog is 100%.
Bootstrap support for L0P9R7 as seed ortholog is 100%.

Group of orthologs #665. Best score 217 bits
Score difference with first non-orthologous sequence - L.chalumnae:26 P.jiroveci:7

H2ZZD6              	100.00%		L0PFJ7              	100.00%
H3AE34              	34.54%		
H2ZXS9              	24.01%		
Bootstrap support for H2ZZD6 as seed ortholog is 79%.
Bootstrap support for L0PFJ7 as seed ortholog is 55%.
Alternative seed ortholog is L0PBC8 (7 bits away from this cluster)

Group of orthologs #666. Best score 217 bits
Score difference with first non-orthologous sequence - L.chalumnae:217 P.jiroveci:217

H3AV89              	100.00%		L0PG81              	100.00%
Bootstrap support for H3AV89 as seed ortholog is 100%.
Bootstrap support for L0PG81 as seed ortholog is 100%.

Group of orthologs #667. Best score 217 bits
Score difference with first non-orthologous sequence - L.chalumnae:217 P.jiroveci:217

H3B675              	100.00%		L0PDX6              	100.00%
Bootstrap support for H3B675 as seed ortholog is 100%.
Bootstrap support for L0PDX6 as seed ortholog is 100%.

Group of orthologs #668. Best score 216 bits
Score difference with first non-orthologous sequence - L.chalumnae:17 P.jiroveci:216

H3APJ2              	100.00%		L0PI61              	100.00%
H3A4K3              	100.00%		L0PA50              	100.00%
Bootstrap support for H3APJ2 as seed ortholog is 73%.
Alternative seed ortholog is H2ZUC1 (17 bits away from this cluster)
Bootstrap support for H3A4K3 as seed ortholog is 88%.
Bootstrap support for L0PI61 as seed ortholog is 100%.
Bootstrap support for L0PA50 as seed ortholog is 100%.

Group of orthologs #669. Best score 216 bits
Score difference with first non-orthologous sequence - L.chalumnae:216 P.jiroveci:216

H2ZSH0              	100.00%		L0P910              	100.00%
Bootstrap support for H2ZSH0 as seed ortholog is 100%.
Bootstrap support for L0P910 as seed ortholog is 100%.

Group of orthologs #670. Best score 216 bits
Score difference with first non-orthologous sequence - L.chalumnae:216 P.jiroveci:216

H3AX22              	100.00%		L0PDH2              	100.00%
Bootstrap support for H3AX22 as seed ortholog is 100%.
Bootstrap support for L0PDH2 as seed ortholog is 100%.

Group of orthologs #671. Best score 216 bits
Score difference with first non-orthologous sequence - L.chalumnae:161 P.jiroveci:216

H3BE64              	100.00%		L0PHK8              	100.00%
Bootstrap support for H3BE64 as seed ortholog is 99%.
Bootstrap support for L0PHK8 as seed ortholog is 100%.

Group of orthologs #672. Best score 215 bits
Score difference with first non-orthologous sequence - L.chalumnae:215 P.jiroveci:215

H3AMX3              	100.00%		L0PAJ0              	100.00%
H3BIM3              	39.43%		
Bootstrap support for H3AMX3 as seed ortholog is 100%.
Bootstrap support for L0PAJ0 as seed ortholog is 100%.

Group of orthologs #673. Best score 214 bits
Score difference with first non-orthologous sequence - L.chalumnae:214 P.jiroveci:214

H2ZW30              	100.00%		L0P9Q8              	100.00%
H3BH60              	39.61%		
H3AN91              	36.23%		
Bootstrap support for H2ZW30 as seed ortholog is 100%.
Bootstrap support for L0P9Q8 as seed ortholog is 100%.

Group of orthologs #674. Best score 214 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:214

H3BA10              	100.00%		L0PBL5              	100.00%
H3AI08              	19.76%		
H3AG72              	13.18%		
Bootstrap support for H3BA10 as seed ortholog is 100%.
Bootstrap support for L0PBL5 as seed ortholog is 100%.

Group of orthologs #675. Best score 214 bits
Score difference with first non-orthologous sequence - L.chalumnae:214 P.jiroveci:214

H2ZVI3              	100.00%		L0PBB0              	100.00%
Bootstrap support for H2ZVI3 as seed ortholog is 100%.
Bootstrap support for L0PBB0 as seed ortholog is 100%.

Group of orthologs #676. Best score 214 bits
Score difference with first non-orthologous sequence - L.chalumnae:214 P.jiroveci:214

H3AHT8              	100.00%		L0PBZ1              	100.00%
Bootstrap support for H3AHT8 as seed ortholog is 100%.
Bootstrap support for L0PBZ1 as seed ortholog is 100%.

Group of orthologs #677. Best score 214 bits
Score difference with first non-orthologous sequence - L.chalumnae:214 P.jiroveci:214

H3AP00              	100.00%		L0PFL8              	100.00%
Bootstrap support for H3AP00 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #678. Best score 213 bits
Score difference with first non-orthologous sequence - L.chalumnae:213 P.jiroveci:213

H3AAV8              	100.00%		L0PF73              	100.00%
Bootstrap support for H3AAV8 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #679. Best score 213 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:213

H3AFD6              	100.00%		L0PEJ9              	100.00%
Bootstrap support for H3AFD6 as seed ortholog is 95%.
Bootstrap support for L0PEJ9 as seed ortholog is 100%.

Group of orthologs #680. Best score 213 bits
Score difference with first non-orthologous sequence - L.chalumnae:213 P.jiroveci:213

H3B9U7              	100.00%		L0PH54              	100.00%
Bootstrap support for H3B9U7 as seed ortholog is 100%.
Bootstrap support for L0PH54 as seed ortholog is 100%.

Group of orthologs #681. Best score 212 bits
Score difference with first non-orthologous sequence - L.chalumnae:32 P.jiroveci:212

H3BH13              	100.00%		L0PGH8              	100.00%
H3AW71              	66.72%		
H3AUD4              	38.30%		
Bootstrap support for H3BH13 as seed ortholog is 85%.
Bootstrap support for L0PGH8 as seed ortholog is 100%.

Group of orthologs #682. Best score 212 bits
Score difference with first non-orthologous sequence - L.chalumnae:49 P.jiroveci:212

M3XK55              	100.00%		L0PEX1              	100.00%
Bootstrap support for M3XK55 as seed ortholog is 93%.
Bootstrap support for L0PEX1 as seed ortholog is 100%.

Group of orthologs #683. Best score 211 bits
Score difference with first non-orthologous sequence - L.chalumnae:211 P.jiroveci:211

H3AAB6              	100.00%		L0PDR1              	100.00%
Bootstrap support for H3AAB6 as seed ortholog is 100%.
Bootstrap support for L0PDR1 as seed ortholog is 100%.

Group of orthologs #684. Best score 210 bits
Score difference with first non-orthologous sequence - L.chalumnae:210 P.jiroveci:210

H3AC76              	100.00%		L0P9U1              	100.00%
M3XL92              	100.00%		
Bootstrap support for H3AC76 as seed ortholog is 100%.
Bootstrap support for M3XL92 as seed ortholog is 100%.
Bootstrap support for L0P9U1 as seed ortholog is 100%.

Group of orthologs #685. Best score 210 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:103

M3XI55              	100.00%		L0PFN2              	100.00%
H3A7Z6              	63.41%		
Bootstrap support for M3XI55 as seed ortholog is 100%.
Bootstrap support for L0PFN2 as seed ortholog is 100%.

Group of orthologs #686. Best score 210 bits
Score difference with first non-orthologous sequence - L.chalumnae:146 P.jiroveci:210

H2ZRK8              	100.00%		L0PFQ3              	100.00%
Bootstrap support for H2ZRK8 as seed ortholog is 99%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #687. Best score 210 bits
Score difference with first non-orthologous sequence - L.chalumnae:210 P.jiroveci:210

H3A886              	100.00%		L0PFS1              	100.00%
Bootstrap support for H3A886 as seed ortholog is 100%.
Bootstrap support for L0PFS1 as seed ortholog is 100%.

Group of orthologs #688. Best score 210 bits
Score difference with first non-orthologous sequence - L.chalumnae:210 P.jiroveci:137

H3BG55              	100.00%		L0PG39              	100.00%
Bootstrap support for H3BG55 as seed ortholog is 100%.
Bootstrap support for L0PG39 as seed ortholog is 99%.

Group of orthologs #689. Best score 209 bits
Score difference with first non-orthologous sequence - L.chalumnae:116 P.jiroveci:209

H2ZW04              	100.00%		L0PAA3              	100.00%
H3AQP0              	19.48%		
H2ZY29              	9.03%		
Bootstrap support for H2ZW04 as seed ortholog is 99%.
Bootstrap support for L0PAA3 as seed ortholog is 100%.

Group of orthologs #690. Best score 209 bits
Score difference with first non-orthologous sequence - L.chalumnae:209 P.jiroveci:209

H3AND2              	100.00%		L0PET6              	100.00%
Bootstrap support for H3AND2 as seed ortholog is 100%.
Bootstrap support for L0PET6 as seed ortholog is 100%.

Group of orthologs #691. Best score 209 bits
Score difference with first non-orthologous sequence - L.chalumnae:209 P.jiroveci:6

H3AZE6              	100.00%		L0PB48              	100.00%
Bootstrap support for H3AZE6 as seed ortholog is 100%.
Bootstrap support for L0PB48 as seed ortholog is 54%.
Alternative seed ortholog is L0PD43 (6 bits away from this cluster)

Group of orthologs #692. Best score 209 bits
Score difference with first non-orthologous sequence - L.chalumnae:209 P.jiroveci:209

H3B2S1              	100.00%		L0PCB3              	100.00%
Bootstrap support for H3B2S1 as seed ortholog is 100%.
Bootstrap support for L0PCB3 as seed ortholog is 100%.

Group of orthologs #693. Best score 208 bits
Score difference with first non-orthologous sequence - L.chalumnae:164 P.jiroveci:208

H2ZSL4              	100.00%		L0PFU0              	100.00%
Bootstrap support for H2ZSL4 as seed ortholog is 99%.
Bootstrap support for L0PFU0 as seed ortholog is 100%.

Group of orthologs #694. Best score 208 bits
Score difference with first non-orthologous sequence - L.chalumnae:208 P.jiroveci:208

H3AYC2              	100.00%		L0PCH0              	100.00%
Bootstrap support for H3AYC2 as seed ortholog is 100%.
Bootstrap support for L0PCH0 as seed ortholog is 100%.

Group of orthologs #695. Best score 208 bits
Score difference with first non-orthologous sequence - L.chalumnae:208 P.jiroveci:208

H3AZS2              	100.00%		L0PD65              	100.00%
Bootstrap support for H3AZS2 as seed ortholog is 100%.
Bootstrap support for L0PD65 as seed ortholog is 100%.

Group of orthologs #696. Best score 208 bits
Score difference with first non-orthologous sequence - L.chalumnae:33 P.jiroveci:114

H3BFJ0              	100.00%		L0PDB8              	100.00%
Bootstrap support for H3BFJ0 as seed ortholog is 83%.
Bootstrap support for L0PDB8 as seed ortholog is 99%.

Group of orthologs #697. Best score 208 bits
Score difference with first non-orthologous sequence - L.chalumnae:208 P.jiroveci:208

H3BIG3              	100.00%		L0PGN8              	100.00%
Bootstrap support for H3BIG3 as seed ortholog is 100%.
Bootstrap support for L0PGN8 as seed ortholog is 100%.

Group of orthologs #698. Best score 207 bits
Score difference with first non-orthologous sequence - L.chalumnae:207 P.jiroveci:207

H3ALC4              	100.00%		L0PGT2              	100.00%
Bootstrap support for H3ALC4 as seed ortholog is 100%.
Bootstrap support for L0PGT2 as seed ortholog is 100%.

Group of orthologs #699. Best score 207 bits
Score difference with first non-orthologous sequence - L.chalumnae:207 P.jiroveci:207

M3XIA9              	100.00%		L0PG86              	100.00%
Bootstrap support for M3XIA9 as seed ortholog is 100%.
Bootstrap support for L0PG86 as seed ortholog is 100%.

Group of orthologs #700. Best score 206 bits
Score difference with first non-orthologous sequence - L.chalumnae:206 P.jiroveci:206

H3BDI8              	100.00%		L0PDJ6              	100.00%
H3A8Y7              	33.67%		
H3AMT3              	26.36%		
Bootstrap support for H3BDI8 as seed ortholog is 100%.
Bootstrap support for L0PDJ6 as seed ortholog is 100%.

Group of orthologs #701. Best score 206 bits
Score difference with first non-orthologous sequence - L.chalumnae:206 P.jiroveci:206

H3AXU6              	100.00%		L0PAL5              	100.00%
H3AFM2              	44.18%		
Bootstrap support for H3AXU6 as seed ortholog is 100%.
Bootstrap support for L0PAL5 as seed ortholog is 100%.

Group of orthologs #702. Best score 205 bits
Score difference with first non-orthologous sequence - L.chalumnae:205 P.jiroveci:205

H3AD86              	100.00%		L0PF53              	100.00%
Bootstrap support for H3AD86 as seed ortholog is 100%.
Bootstrap support for L0PF53 as seed ortholog is 100%.

Group of orthologs #703. Best score 205 bits
Score difference with first non-orthologous sequence - L.chalumnae:205 P.jiroveci:205

H3AK09              	100.00%		L0PDS2              	100.00%
Bootstrap support for H3AK09 as seed ortholog is 100%.
Bootstrap support for L0PDS2 as seed ortholog is 100%.

Group of orthologs #704. Best score 205 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:126

H3ARP2              	100.00%		L0PAZ8              	100.00%
Bootstrap support for H3ARP2 as seed ortholog is 99%.
Bootstrap support for L0PAZ8 as seed ortholog is 99%.

Group of orthologs #705. Best score 204 bits
Score difference with first non-orthologous sequence - L.chalumnae:204 P.jiroveci:204

H3ABR7              	100.00%		L0PFD8              	100.00%
H3AEI9              	18.00%		
H3B9U4              	12.92%		
H3BDG0              	5.85%		
Bootstrap support for H3ABR7 as seed ortholog is 100%.
Bootstrap support for L0PFD8 as seed ortholog is 100%.

Group of orthologs #706. Best score 204 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:74

H3AUE0              	100.00%		L0PDS3              	100.00%
H3BBE2              	53.00%		
Bootstrap support for H3AUE0 as seed ortholog is 99%.
Bootstrap support for L0PDS3 as seed ortholog is 98%.

Group of orthologs #707. Best score 203 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:2

H3A6I1              	100.00%		L0PGT4              	100.00%
H3BH41              	44.16%		
H3AT43              	15.96%		
H3BBR2              	15.96%		
H2ZZN6              	15.96%		
H2ZYK1              	14.10%		
H3B3G7              	9.09%		
H3AV19              	6.68%		
H2ZZ04              	6.31%		
Bootstrap support for H3A6I1 as seed ortholog is 95%.
Bootstrap support for L0PGT4 as seed ortholog is 53%.
Alternative seed ortholog is L0PCN5 (2 bits away from this cluster)

Group of orthologs #708. Best score 203 bits
Score difference with first non-orthologous sequence - L.chalumnae:203 P.jiroveci:203

H3BEG5              	100.00%		L0PBN7              	100.00%
M3XI53              	21.38%		
Bootstrap support for H3BEG5 as seed ortholog is 100%.
Bootstrap support for L0PBN7 as seed ortholog is 100%.

Group of orthologs #709. Best score 203 bits
Score difference with first non-orthologous sequence - L.chalumnae:203 P.jiroveci:203

H3BG82              	100.00%		L0PFP0              	100.00%
H2ZYT6              	42.22%		
Bootstrap support for H3BG82 as seed ortholog is 100%.
Bootstrap support for L0PFP0 as seed ortholog is 100%.

Group of orthologs #710. Best score 203 bits
Score difference with first non-orthologous sequence - L.chalumnae:203 P.jiroveci:203

H3B3U1              	100.00%		L0PC18              	100.00%
Bootstrap support for H3B3U1 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #711. Best score 203 bits
Score difference with first non-orthologous sequence - L.chalumnae:203 P.jiroveci:203

H3BFT6              	100.00%		L0PAC1              	100.00%
Bootstrap support for H3BFT6 as seed ortholog is 100%.
Bootstrap support for L0PAC1 as seed ortholog is 100%.

Group of orthologs #712. Best score 202 bits
Score difference with first non-orthologous sequence - L.chalumnae:202 P.jiroveci:202

H2ZUE9              	100.00%		L0PCK9              	100.00%
Bootstrap support for H2ZUE9 as seed ortholog is 100%.
Bootstrap support for L0PCK9 as seed ortholog is 100%.

Group of orthologs #713. Best score 202 bits
Score difference with first non-orthologous sequence - L.chalumnae:202 P.jiroveci:202

H2ZT96              	100.00%		L0PFH3              	100.00%
Bootstrap support for H2ZT96 as seed ortholog is 100%.
Bootstrap support for L0PFH3 as seed ortholog is 100%.

Group of orthologs #714. Best score 202 bits
Score difference with first non-orthologous sequence - L.chalumnae:202 P.jiroveci:202

H3A3Z4              	100.00%		L0PEL2              	100.00%
Bootstrap support for H3A3Z4 as seed ortholog is 100%.
Bootstrap support for L0PEL2 as seed ortholog is 100%.

Group of orthologs #715. Best score 202 bits
Score difference with first non-orthologous sequence - L.chalumnae:202 P.jiroveci:202

H3B568              	100.00%		L0PHA7              	100.00%
Bootstrap support for H3B568 as seed ortholog is 100%.
Bootstrap support for L0PHA7 as seed ortholog is 100%.

Group of orthologs #716. Best score 201 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:140

H3ANM8              	100.00%		L0PCC3              	100.00%
H3BI60              	67.83%		
H3A6H8              	65.65%		
H3AAT1              	51.30%		
Bootstrap support for H3ANM8 as seed ortholog is 99%.
Bootstrap support for L0PCC3 as seed ortholog is 99%.

Group of orthologs #717. Best score 201 bits
Score difference with first non-orthologous sequence - L.chalumnae:99 P.jiroveci:150

H3ANU5              	100.00%		L0P7B1              	100.00%
H3B917              	100.00%		
M3XHT1              	95.65%		
Bootstrap support for H3ANU5 as seed ortholog is 100%.
Bootstrap support for H3B917 as seed ortholog is 100%.
Bootstrap support for L0P7B1 as seed ortholog is 100%.

Group of orthologs #718. Best score 201 bits
Score difference with first non-orthologous sequence - L.chalumnae:99 P.jiroveci:201

H3AP32              	100.00%		L0PE53              	100.00%
H3ARN1              	38.94%		
Bootstrap support for H3AP32 as seed ortholog is 97%.
Bootstrap support for L0PE53 as seed ortholog is 100%.

Group of orthologs #719. Best score 200 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:200

H3B3U0              	100.00%		L0PBS7              	100.00%
H3B3F2              	10.97%		
Bootstrap support for H3B3U0 as seed ortholog is 89%.
Bootstrap support for L0PBS7 as seed ortholog is 100%.

Group of orthologs #720. Best score 200 bits
Score difference with first non-orthologous sequence - L.chalumnae:200 P.jiroveci:200

H3ASZ7              	100.00%		L0PEI5              	100.00%
Bootstrap support for H3ASZ7 as seed ortholog is 100%.
Bootstrap support for L0PEI5 as seed ortholog is 100%.

Group of orthologs #721. Best score 200 bits
Score difference with first non-orthologous sequence - L.chalumnae:200 P.jiroveci:200

H3B798              	100.00%		L0PDJ4              	100.00%
Bootstrap support for H3B798 as seed ortholog is 100%.
Bootstrap support for L0PDJ4 as seed ortholog is 100%.

Group of orthologs #722. Best score 200 bits
Score difference with first non-orthologous sequence - L.chalumnae:200 P.jiroveci:200

H3BI06              	100.00%		L0PF44              	100.00%
Bootstrap support for H3BI06 as seed ortholog is 100%.
Bootstrap support for L0PF44 as seed ortholog is 100%.

Group of orthologs #723. Best score 199 bits
Score difference with first non-orthologous sequence - L.chalumnae:199 P.jiroveci:199

H2ZUP0              	100.00%		L0PFE6              	100.00%
Bootstrap support for H2ZUP0 as seed ortholog is 100%.
Bootstrap support for L0PFE6 as seed ortholog is 100%.

Group of orthologs #724. Best score 199 bits
Score difference with first non-orthologous sequence - L.chalumnae:199 P.jiroveci:199

H3AXW3              	100.00%		L0PFV3              	100.00%
Bootstrap support for H3AXW3 as seed ortholog is 100%.
Bootstrap support for L0PFV3 as seed ortholog is 100%.

Group of orthologs #725. Best score 199 bits
Score difference with first non-orthologous sequence - L.chalumnae:199 P.jiroveci:199

H3B3L5              	100.00%		L0PBD4              	100.00%
Bootstrap support for H3B3L5 as seed ortholog is 100%.
Bootstrap support for L0PBD4 as seed ortholog is 100%.

Group of orthologs #726. Best score 199 bits
Score difference with first non-orthologous sequence - L.chalumnae:199 P.jiroveci:199

H3BB46              	100.00%		L0PCI3              	100.00%
Bootstrap support for H3BB46 as seed ortholog is 100%.
Bootstrap support for L0PCI3 as seed ortholog is 100%.

Group of orthologs #727. Best score 198 bits
Score difference with first non-orthologous sequence - L.chalumnae:132 P.jiroveci:198

H3BA76              	100.00%		L0PG16              	100.00%
H2ZVX5              	30.11%		
H3BHP2              	5.50%		
Bootstrap support for H3BA76 as seed ortholog is 99%.
Bootstrap support for L0PG16 as seed ortholog is 100%.

Group of orthologs #728. Best score 198 bits
Score difference with first non-orthologous sequence - L.chalumnae:198 P.jiroveci:198

H3B7G8              	100.00%		L0PA86              	100.00%
Bootstrap support for H3B7G8 as seed ortholog is 100%.
Bootstrap support for L0PA86 as seed ortholog is 100%.

Group of orthologs #729. Best score 197 bits
Score difference with first non-orthologous sequence - L.chalumnae:46 P.jiroveci:197

H3AV21              	100.00%		L0PCY2              	100.00%
H3ASC2              	5.40%		
Bootstrap support for H3AV21 as seed ortholog is 99%.
Bootstrap support for L0PCY2 as seed ortholog is 100%.

Group of orthologs #730. Best score 197 bits
Score difference with first non-orthologous sequence - L.chalumnae:197 P.jiroveci:197

H3BBK5              	100.00%		L0PBM3              	100.00%
Bootstrap support for H3BBK5 as seed ortholog is 100%.
Bootstrap support for L0PBM3 as seed ortholog is 100%.

Group of orthologs #731. Best score 197 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:197

M3XGY2              	100.00%		L0PF75              	100.00%
Bootstrap support for M3XGY2 as seed ortholog is 99%.
Bootstrap support for L0PF75 as seed ortholog is 100%.

Group of orthologs #732. Best score 196 bits
Score difference with first non-orthologous sequence - L.chalumnae:196 P.jiroveci:196

H2ZZB1              	100.00%		L0P9Z4              	100.00%
H3AY17              	50.39%		
Bootstrap support for H2ZZB1 as seed ortholog is 100%.
Bootstrap support for L0P9Z4 as seed ortholog is 100%.

Group of orthologs #733. Best score 196 bits
Score difference with first non-orthologous sequence - L.chalumnae:196 P.jiroveci:196

H2ZXK8              	100.00%		L0P9I0              	100.00%
Bootstrap support for H2ZXK8 as seed ortholog is 100%.
Bootstrap support for L0P9I0 as seed ortholog is 100%.

Group of orthologs #734. Best score 196 bits
Score difference with first non-orthologous sequence - L.chalumnae:196 P.jiroveci:196

H3AMY6              	100.00%		L0P901              	100.00%
Bootstrap support for H3AMY6 as seed ortholog is 100%.
Bootstrap support for L0P901 as seed ortholog is 100%.

Group of orthologs #735. Best score 196 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:62

H3BF67              	100.00%		L0PAA8              	100.00%
Bootstrap support for H3BF67 as seed ortholog is 99%.
Bootstrap support for L0PAA8 as seed ortholog is 99%.

Group of orthologs #736. Best score 195 bits
Score difference with first non-orthologous sequence - L.chalumnae:195 P.jiroveci:195

H3A5H3              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	64.16%
Bootstrap support for H3A5H3 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #737. Best score 195 bits
Score difference with first non-orthologous sequence - L.chalumnae:25 P.jiroveci:34

H3ARN2              	100.00%		L0PEA7              	100.00%
H2ZZJ1              	35.89%		
Bootstrap support for H3ARN2 as seed ortholog is 70%.
Alternative seed ortholog is H3ALX3 (25 bits away from this cluster)
Bootstrap support for L0PEA7 as seed ortholog is 83%.

Group of orthologs #738. Best score 195 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:195

H3ALI6              	100.00%		L0PGN9              	100.00%
Bootstrap support for H3ALI6 as seed ortholog is 98%.
Bootstrap support for L0PGN9 as seed ortholog is 100%.

Group of orthologs #739. Best score 195 bits
Score difference with first non-orthologous sequence - L.chalumnae:195 P.jiroveci:195

H3ARX8              	100.00%		L0PE58              	100.00%
Bootstrap support for H3ARX8 as seed ortholog is 100%.
Bootstrap support for L0PE58 as seed ortholog is 100%.

Group of orthologs #740. Best score 194 bits
Score difference with first non-orthologous sequence - L.chalumnae:194 P.jiroveci:194

H3B063              	100.00%		L0PGX9              	100.00%
Bootstrap support for H3B063 as seed ortholog is 100%.
Bootstrap support for L0PGX9 as seed ortholog is 100%.

Group of orthologs #741. Best score 193 bits
Score difference with first non-orthologous sequence - L.chalumnae:37 P.jiroveci:93

H3B8N0              	100.00%		L0PAY4              	100.00%
H3BE02              	55.88%		
H3A6T6              	42.65%		
H3A0A2              	30.88%		
Bootstrap support for H3B8N0 as seed ortholog is 97%.
Bootstrap support for L0PAY4 as seed ortholog is 100%.

Group of orthologs #742. Best score 193 bits
Score difference with first non-orthologous sequence - L.chalumnae:28 P.jiroveci:193

H3B3J5              	100.00%		L0PC02              	100.00%
H3AG02              	49.39%		
H3B3M4              	36.27%		
Bootstrap support for H3B3J5 as seed ortholog is 78%.
Bootstrap support for L0PC02 as seed ortholog is 100%.

Group of orthologs #743. Best score 193 bits
Score difference with first non-orthologous sequence - L.chalumnae:193 P.jiroveci:193

H3BGK0              	100.00%		L0PGJ6              	100.00%
H3ARZ7              	43.07%		
Bootstrap support for H3BGK0 as seed ortholog is 100%.
Bootstrap support for L0PGJ6 as seed ortholog is 100%.

Group of orthologs #744. Best score 193 bits
Score difference with first non-orthologous sequence - L.chalumnae:193 P.jiroveci:193

H3AZH6              	100.00%		L0PAR2              	100.00%
Bootstrap support for H3AZH6 as seed ortholog is 100%.
Bootstrap support for L0PAR2 as seed ortholog is 100%.

Group of orthologs #745. Best score 193 bits
Score difference with first non-orthologous sequence - L.chalumnae:193 P.jiroveci:193

H3B8D0              	100.00%		L0PCZ4              	100.00%
Bootstrap support for H3B8D0 as seed ortholog is 100%.
Bootstrap support for L0PCZ4 as seed ortholog is 100%.

Group of orthologs #746. Best score 193 bits
Score difference with first non-orthologous sequence - L.chalumnae:193 P.jiroveci:193

H3BIK6              	100.00%		L0P9Y2              	100.00%
Bootstrap support for H3BIK6 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #747. Best score 192 bits
Score difference with first non-orthologous sequence - L.chalumnae:192 P.jiroveci:192

H3BGK2              	100.00%		L0PAM3              	100.00%
Bootstrap support for H3BGK2 as seed ortholog is 100%.
Bootstrap support for L0PAM3 as seed ortholog is 100%.

Group of orthologs #748. Best score 191 bits
Score difference with first non-orthologous sequence - L.chalumnae:191 P.jiroveci:191

H3AB75              	100.00%		L0PHT7              	100.00%
H3AE82              	37.16%		
M3XI70              	30.57%		
Bootstrap support for H3AB75 as seed ortholog is 100%.
Bootstrap support for L0PHT7 as seed ortholog is 100%.

Group of orthologs #749. Best score 191 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:191

H3A1W6              	100.00%		L0P838              	100.00%
Bootstrap support for H3A1W6 as seed ortholog is 99%.
Bootstrap support for L0P838 as seed ortholog is 100%.

Group of orthologs #750. Best score 191 bits
Score difference with first non-orthologous sequence - L.chalumnae:97 P.jiroveci:191

H3AGJ0              	100.00%		L0P746              	100.00%
Bootstrap support for H3AGJ0 as seed ortholog is 99%.
Bootstrap support for L0P746 as seed ortholog is 100%.

Group of orthologs #751. Best score 191 bits
Score difference with first non-orthologous sequence - L.chalumnae:191 P.jiroveci:191

H3AFY8              	100.00%		L0P919              	100.00%
Bootstrap support for H3AFY8 as seed ortholog is 100%.
Bootstrap support for L0P919 as seed ortholog is 100%.

Group of orthologs #752. Best score 191 bits
Score difference with first non-orthologous sequence - L.chalumnae:191 P.jiroveci:191

H3AWT4              	100.00%		L0PB31              	100.00%
Bootstrap support for H3AWT4 as seed ortholog is 100%.
Bootstrap support for L0PB31 as seed ortholog is 100%.

Group of orthologs #753. Best score 191 bits
Score difference with first non-orthologous sequence - L.chalumnae:69 P.jiroveci:15

M3XLC8              	100.00%		L0PC99              	100.00%
Bootstrap support for M3XLC8 as seed ortholog is 91%.
Bootstrap support for L0PC99 as seed ortholog is 71%.
Alternative seed ortholog is L0PIP5 (15 bits away from this cluster)

Group of orthologs #754. Best score 190 bits
Score difference with first non-orthologous sequence - L.chalumnae:134 P.jiroveci:190

H3ARJ8              	100.00%		L0PFH7              	100.00%
Bootstrap support for H3ARJ8 as seed ortholog is 99%.
Bootstrap support for L0PFH7 as seed ortholog is 100%.

Group of orthologs #755. Best score 190 bits
Score difference with first non-orthologous sequence - L.chalumnae:190 P.jiroveci:190

H3BAE2              	100.00%		L0PE85              	100.00%
Bootstrap support for H3BAE2 as seed ortholog is 100%.
Bootstrap support for L0PE85 as seed ortholog is 100%.

Group of orthologs #756. Best score 189 bits
Score difference with first non-orthologous sequence - L.chalumnae:138 P.jiroveci:189

H3AN26              	100.00%		L0PDS6              	100.00%
H3B040              	29.27%		
Bootstrap support for H3AN26 as seed ortholog is 99%.
Bootstrap support for L0PDS6 as seed ortholog is 100%.

Group of orthologs #757. Best score 189 bits
Score difference with first non-orthologous sequence - L.chalumnae:189 P.jiroveci:189

H3AZ46              	100.00%		L0PGV9              	100.00%
                    	       		L0PGJ0              	95.51%
Bootstrap support for H3AZ46 as seed ortholog is 100%.
Bootstrap support for L0PGV9 as seed ortholog is 100%.

Group of orthologs #758. Best score 189 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:189

H3BFP2              	100.00%		L0PDE4              	100.00%
H3ANF9              	41.56%		
Bootstrap support for H3BFP2 as seed ortholog is 99%.
Bootstrap support for L0PDE4 as seed ortholog is 100%.

Group of orthologs #759. Best score 189 bits
Score difference with first non-orthologous sequence - L.chalumnae:189 P.jiroveci:189

H3AYK7              	100.00%		L0PCK3              	100.00%
Bootstrap support for H3AYK7 as seed ortholog is 100%.
Bootstrap support for L0PCK3 as seed ortholog is 100%.

Group of orthologs #760. Best score 189 bits
Score difference with first non-orthologous sequence - L.chalumnae:189 P.jiroveci:189

H3BIA2              	100.00%		L0PBA4              	100.00%
Bootstrap support for H3BIA2 as seed ortholog is 100%.
Bootstrap support for L0PBA4 as seed ortholog is 100%.

Group of orthologs #761. Best score 188 bits
Score difference with first non-orthologous sequence - L.chalumnae:188 P.jiroveci:188

H3B3I0              	100.00%		L0PH33              	100.00%
H3B2J1              	54.49%		
H3A192              	24.78%		
H3A063              	22.83%		
H3BIG5              	21.88%		
H3AF86              	21.81%		
Bootstrap support for H3B3I0 as seed ortholog is 100%.
Bootstrap support for L0PH33 as seed ortholog is 100%.

Group of orthologs #762. Best score 188 bits
Score difference with first non-orthologous sequence - L.chalumnae:188 P.jiroveci:188

H3A708              	100.00%		L0PDB6              	100.00%
H3A653              	21.99%		
H3AL00              	13.09%		
Bootstrap support for H3A708 as seed ortholog is 100%.
Bootstrap support for L0PDB6 as seed ortholog is 100%.

Group of orthologs #763. Best score 188 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:188

H3A604              	100.00%		L0PFZ6              	100.00%
                    	       		L0P7L2              	95.99%
Bootstrap support for H3A604 as seed ortholog is 99%.
Bootstrap support for L0PFZ6 as seed ortholog is 100%.

Group of orthologs #764. Best score 188 bits
Score difference with first non-orthologous sequence - L.chalumnae:113 P.jiroveci:188

H3A6G6              	100.00%		L0PB84              	100.00%
Bootstrap support for H3A6G6 as seed ortholog is 99%.
Bootstrap support for L0PB84 as seed ortholog is 100%.

Group of orthologs #765. Best score 188 bits
Score difference with first non-orthologous sequence - L.chalumnae:37 P.jiroveci:188

H3AVE6              	100.00%		L0PGG0              	100.00%
Bootstrap support for H3AVE6 as seed ortholog is 81%.
Bootstrap support for L0PGG0 as seed ortholog is 100%.

Group of orthologs #766. Best score 188 bits
Score difference with first non-orthologous sequence - L.chalumnae:188 P.jiroveci:188

H3BEI3              	100.00%		L0P863              	100.00%
Bootstrap support for H3BEI3 as seed ortholog is 100%.
Bootstrap support for L0P863 as seed ortholog is 100%.

Group of orthologs #767. Best score 187 bits
Score difference with first non-orthologous sequence - L.chalumnae:187 P.jiroveci:187

H3BIA1              	100.00%		L0PBL3              	100.00%
H3B7T3              	55.29%		
H3B0A6              	40.60%		
Bootstrap support for H3BIA1 as seed ortholog is 100%.
Bootstrap support for L0PBL3 as seed ortholog is 100%.

Group of orthologs #768. Best score 186 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:132

H3AWA9              	100.00%		L0PIS9              	100.00%
H3ABH0              	42.04%		
M3XHH1              	10.18%		
Bootstrap support for H3AWA9 as seed ortholog is 98%.
Bootstrap support for L0PIS9 as seed ortholog is 100%.

Group of orthologs #769. Best score 186 bits
Score difference with first non-orthologous sequence - L.chalumnae:186 P.jiroveci:186

H3A946              	100.00%		L0PEB9              	100.00%
                    	       		L0PA79              	57.34%
Bootstrap support for H3A946 as seed ortholog is 100%.
Bootstrap support for L0PEB9 as seed ortholog is 100%.

Group of orthologs #770. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:185 P.jiroveci:185

H3B169              	100.00%		L0PC96              	100.00%
H2ZYV3              	22.51%		
H2ZTW7              	18.61%		
H3A6F5              	16.45%		
H3B4N0              	14.29%		
Bootstrap support for H3B169 as seed ortholog is 100%.
Bootstrap support for L0PC96 as seed ortholog is 100%.

Group of orthologs #771. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:185 P.jiroveci:185

M3XK62              	100.00%		L0PCF4              	100.00%
M3XGI1              	75.28%		L0P926              	62.14%
H3BCU2              	28.54%		
Bootstrap support for M3XK62 as seed ortholog is 100%.
Bootstrap support for L0PCF4 as seed ortholog is 100%.

Group of orthologs #772. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:185 P.jiroveci:185

H3BC78              	100.00%		L0PCF8              	100.00%
H3AJ29              	67.99%		
Bootstrap support for H3BC78 as seed ortholog is 100%.
Bootstrap support for L0PCF8 as seed ortholog is 100%.

Group of orthologs #773. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:29 P.jiroveci:62

H3A6U6              	100.00%		L0PG51              	100.00%
Bootstrap support for H3A6U6 as seed ortholog is 80%.
Bootstrap support for L0PG51 as seed ortholog is 91%.

Group of orthologs #774. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:185 P.jiroveci:185

H3AJT2              	100.00%		L0P8C9              	100.00%
Bootstrap support for H3AJT2 as seed ortholog is 100%.
Bootstrap support for L0P8C9 as seed ortholog is 100%.

Group of orthologs #775. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:112 P.jiroveci:185

H3AL25              	100.00%		L0P9I3              	100.00%
Bootstrap support for H3AL25 as seed ortholog is 99%.
Bootstrap support for L0P9I3 as seed ortholog is 100%.

Group of orthologs #776. Best score 185 bits
Score difference with first non-orthologous sequence - L.chalumnae:185 P.jiroveci:185

H3AQQ6              	100.00%		L0PCC1              	100.00%
Bootstrap support for H3AQQ6 as seed ortholog is 100%.
Bootstrap support for L0PCC1 as seed ortholog is 100%.

Group of orthologs #777. Best score 184 bits
Score difference with first non-orthologous sequence - L.chalumnae:38 P.jiroveci:124

H3ASS0              	100.00%		L0P8M4              	100.00%
H3AX47              	24.40%		
H3B3C5              	13.06%		
Bootstrap support for H3ASS0 as seed ortholog is 91%.
Bootstrap support for L0P8M4 as seed ortholog is 100%.

Group of orthologs #778. Best score 184 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:184

H3AYW3              	100.00%		L0PAP9              	100.00%
H2ZWG2              	31.07%		
Bootstrap support for H3AYW3 as seed ortholog is 99%.
Bootstrap support for L0PAP9 as seed ortholog is 100%.

Group of orthologs #779. Best score 184 bits
Score difference with first non-orthologous sequence - L.chalumnae:184 P.jiroveci:184

H3AMD3              	100.00%		L0PE05              	100.00%
Bootstrap support for H3AMD3 as seed ortholog is 100%.
Bootstrap support for L0PE05 as seed ortholog is 100%.

Group of orthologs #780. Best score 183 bits
Score difference with first non-orthologous sequence - L.chalumnae:183 P.jiroveci:183

H3A8I9              	100.00%		L0PH23              	100.00%
H3AD97              	29.77%		
Bootstrap support for H3A8I9 as seed ortholog is 100%.
Bootstrap support for L0PH23 as seed ortholog is 100%.

Group of orthologs #781. Best score 183 bits
Score difference with first non-orthologous sequence - L.chalumnae:183 P.jiroveci:183

H3AQ57              	100.00%		L0P740              	100.00%
Bootstrap support for H3AQ57 as seed ortholog is 100%.
Bootstrap support for L0P740 as seed ortholog is 100%.

Group of orthologs #782. Best score 182 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:182

H3AK82              	100.00%		L0PEN4              	100.00%
H3AUW0              	21.08%		
Bootstrap support for H3AK82 as seed ortholog is 80%.
Bootstrap support for L0PEN4 as seed ortholog is 100%.

Group of orthologs #783. Best score 182 bits
Score difference with first non-orthologous sequence - L.chalumnae:114 P.jiroveci:182

H3A3E4              	100.00%		L0PEQ4              	100.00%
Bootstrap support for H3A3E4 as seed ortholog is 99%.
Bootstrap support for L0PEQ4 as seed ortholog is 100%.

Group of orthologs #784. Best score 182 bits
Score difference with first non-orthologous sequence - L.chalumnae:182 P.jiroveci:182

H3AAG2              	100.00%		L0PCV5              	100.00%
Bootstrap support for H3AAG2 as seed ortholog is 100%.
Bootstrap support for L0PCV5 as seed ortholog is 100%.

Group of orthologs #785. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:181 P.jiroveci:181

H3AEC0              	100.00%		L0PFK7              	100.00%
H3A7N4              	78.01%		
H3B9Y3              	74.17%		
Bootstrap support for H3AEC0 as seed ortholog is 100%.
Bootstrap support for L0PFK7 as seed ortholog is 100%.

Group of orthologs #786. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:63

H3ANL3              	100.00%		L0PDC4              	100.00%
                    	       		L0PBK4              	9.47%
Bootstrap support for H3ANL3 as seed ortholog is 99%.
Bootstrap support for L0PDC4 as seed ortholog is 98%.

Group of orthologs #787. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:181

H3A9T0              	100.00%		L0PGD9              	100.00%
Bootstrap support for H3A9T0 as seed ortholog is 98%.
Bootstrap support for L0PGD9 as seed ortholog is 100%.

Group of orthologs #788. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:181 P.jiroveci:181

H3AIP7              	100.00%		L0PA24              	100.00%
Bootstrap support for H3AIP7 as seed ortholog is 100%.
Bootstrap support for L0PA24 as seed ortholog is 100%.

Group of orthologs #789. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:65 P.jiroveci:82

H3ASR1              	100.00%		L0PAQ4              	100.00%
Bootstrap support for H3ASR1 as seed ortholog is 94%.
Bootstrap support for L0PAQ4 as seed ortholog is 97%.

Group of orthologs #790. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:181 P.jiroveci:181

M3XJU4              	100.00%		L0P9I6              	100.00%
Bootstrap support for M3XJU4 as seed ortholog is 100%.
Bootstrap support for L0P9I6 as seed ortholog is 100%.

Group of orthologs #791. Best score 181 bits
Score difference with first non-orthologous sequence - L.chalumnae:181 P.jiroveci:181

M3XJ77              	100.00%		L0PFC3              	100.00%
Bootstrap support for M3XJ77 as seed ortholog is 100%.
Bootstrap support for L0PFC3 as seed ortholog is 100%.

Group of orthologs #792. Best score 180 bits
Score difference with first non-orthologous sequence - L.chalumnae:65 P.jiroveci:180

H3A801              	100.00%		L0PA51              	100.00%
Bootstrap support for H3A801 as seed ortholog is 99%.
Bootstrap support for L0PA51 as seed ortholog is 100%.

Group of orthologs #793. Best score 180 bits
Score difference with first non-orthologous sequence - L.chalumnae:180 P.jiroveci:180

H3ABJ6              	100.00%		L0PC50              	100.00%
Bootstrap support for H3ABJ6 as seed ortholog is 100%.
Bootstrap support for L0PC50 as seed ortholog is 100%.

Group of orthologs #794. Best score 180 bits
Score difference with first non-orthologous sequence - L.chalumnae:180 P.jiroveci:180

H3AEZ7              	100.00%		L0PDW5              	100.00%
Bootstrap support for H3AEZ7 as seed ortholog is 100%.
Bootstrap support for L0PDW5 as seed ortholog is 100%.

Group of orthologs #795. Best score 180 bits
Score difference with first non-orthologous sequence - L.chalumnae:180 P.jiroveci:180

H3ANL4              	100.00%		L0PFD7              	100.00%
Bootstrap support for H3ANL4 as seed ortholog is 100%.
Bootstrap support for L0PFD7 as seed ortholog is 100%.

Group of orthologs #796. Best score 179 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:72

H3B685              	100.00%		L0PGM0              	100.00%
H3B5C8              	56.52%		
Bootstrap support for H3B685 as seed ortholog is 98%.
Bootstrap support for L0PGM0 as seed ortholog is 99%.

Group of orthologs #797. Best score 178 bits
Score difference with first non-orthologous sequence - L.chalumnae:178 P.jiroveci:178

H3BIP8              	100.00%		L0PA92              	100.00%
H3B6I8              	25.00%		L0P8X8              	44.26%
Bootstrap support for H3BIP8 as seed ortholog is 100%.
Bootstrap support for L0PA92 as seed ortholog is 100%.

Group of orthologs #798. Best score 178 bits
Score difference with first non-orthologous sequence - L.chalumnae:178 P.jiroveci:178

H3BIS6              	100.00%		L0PG84              	100.00%
Bootstrap support for H3BIS6 as seed ortholog is 100%.
Bootstrap support for L0PG84 as seed ortholog is 100%.

Group of orthologs #799. Best score 177 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:177

H3BBP3              	100.00%		L0PD97              	100.00%
H3A183              	13.90%		
M3XKG2              	8.52%		
H3AMG1              	8.30%		
Bootstrap support for H3BBP3 as seed ortholog is 99%.
Bootstrap support for L0PD97 as seed ortholog is 100%.

Group of orthologs #800. Best score 177 bits
Score difference with first non-orthologous sequence - L.chalumnae:177 P.jiroveci:177

H3AC17              	100.00%		L0PC53              	100.00%
Bootstrap support for H3AC17 as seed ortholog is 100%.
Bootstrap support for L0PC53 as seed ortholog is 100%.

Group of orthologs #801. Best score 177 bits
Score difference with first non-orthologous sequence - L.chalumnae:177 P.jiroveci:177

H3BDF2              	100.00%		L0PE37              	100.00%
Bootstrap support for H3BDF2 as seed ortholog is 100%.
Bootstrap support for L0PE37 as seed ortholog is 100%.

Group of orthologs #802. Best score 176 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:176

H3A3L7              	100.00%		L0P9Z5              	100.00%
H3BDI2              	54.57%		
Bootstrap support for H3A3L7 as seed ortholog is 87%.
Bootstrap support for L0P9Z5 as seed ortholog is 100%.

Group of orthologs #803. Best score 176 bits
Score difference with first non-orthologous sequence - L.chalumnae:176 P.jiroveci:176

H2ZTA7              	100.00%		L0P9M6              	100.00%
Bootstrap support for H2ZTA7 as seed ortholog is 100%.
Bootstrap support for L0P9M6 as seed ortholog is 100%.

Group of orthologs #804. Best score 176 bits
Score difference with first non-orthologous sequence - L.chalumnae:78 P.jiroveci:176

H2ZUA3              	100.00%		L0PE77              	100.00%
Bootstrap support for H2ZUA3 as seed ortholog is 99%.
Bootstrap support for L0PE77 as seed ortholog is 100%.

Group of orthologs #805. Best score 176 bits
Score difference with first non-orthologous sequence - L.chalumnae:176 P.jiroveci:176

H3A1A8              	100.00%		L0PBK2              	100.00%
Bootstrap support for H3A1A8 as seed ortholog is 100%.
Bootstrap support for L0PBK2 as seed ortholog is 100%.

Group of orthologs #806. Best score 176 bits
Score difference with first non-orthologous sequence - L.chalumnae:176 P.jiroveci:176

H3AG32              	100.00%		L0PC06              	100.00%
Bootstrap support for H3AG32 as seed ortholog is 100%.
Bootstrap support for L0PC06 as seed ortholog is 100%.

Group of orthologs #807. Best score 176 bits
Score difference with first non-orthologous sequence - L.chalumnae:176 P.jiroveci:176

H3ATE3              	100.00%		L0PD35              	100.00%
Bootstrap support for H3ATE3 as seed ortholog is 100%.
Bootstrap support for L0PD35 as seed ortholog is 100%.

Group of orthologs #808. Best score 175 bits
Score difference with first non-orthologous sequence - L.chalumnae:97 P.jiroveci:102

H3BDU0              	100.00%		L0PFK9              	100.00%
H3AAK4              	36.23%		
Bootstrap support for H3BDU0 as seed ortholog is 98%.
Bootstrap support for L0PFK9 as seed ortholog is 99%.

Group of orthologs #809. Best score 175 bits
Score difference with first non-orthologous sequence - L.chalumnae:47 P.jiroveci:175

H2ZTK0              	100.00%		L0PFW7              	100.00%
Bootstrap support for H2ZTK0 as seed ortholog is 98%.
Bootstrap support for L0PFW7 as seed ortholog is 100%.

Group of orthologs #810. Best score 175 bits
Score difference with first non-orthologous sequence - L.chalumnae:175 P.jiroveci:175

H3A0F4              	100.00%		L0PBE8              	100.00%
Bootstrap support for H3A0F4 as seed ortholog is 100%.
Bootstrap support for L0PBE8 as seed ortholog is 100%.

Group of orthologs #811. Best score 175 bits
Score difference with first non-orthologous sequence - L.chalumnae:175 P.jiroveci:175

H3B7D2              	100.00%		L0PEK7              	100.00%
Bootstrap support for H3B7D2 as seed ortholog is 100%.
Bootstrap support for L0PEK7 as seed ortholog is 100%.

Group of orthologs #812. Best score 175 bits
Score difference with first non-orthologous sequence - L.chalumnae:175 P.jiroveci:175

H3B6Y8              	100.00%		L0PGZ5              	100.00%
Bootstrap support for H3B6Y8 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #813. Best score 174 bits
Score difference with first non-orthologous sequence - L.chalumnae:174 P.jiroveci:174

H2ZVH4              	100.00%		L0PFL0              	100.00%
Bootstrap support for H2ZVH4 as seed ortholog is 100%.
Bootstrap support for L0PFL0 as seed ortholog is 100%.

Group of orthologs #814. Best score 174 bits
Score difference with first non-orthologous sequence - L.chalumnae:174 P.jiroveci:174

H3APF5              	100.00%		L0PBC7              	100.00%
Bootstrap support for H3APF5 as seed ortholog is 100%.
Bootstrap support for L0PBC7 as seed ortholog is 100%.

Group of orthologs #815. Best score 174 bits
Score difference with first non-orthologous sequence - L.chalumnae:174 P.jiroveci:174

H3BAG8              	100.00%		L0PB81              	100.00%
Bootstrap support for H3BAG8 as seed ortholog is 100%.
Bootstrap support for L0PB81 as seed ortholog is 100%.

Group of orthologs #816. Best score 173 bits
Score difference with first non-orthologous sequence - L.chalumnae:173 P.jiroveci:173

H2ZY95              	100.00%		L0P8J4              	100.00%
H2ZZ77              	63.04%		
Bootstrap support for H2ZY95 as seed ortholog is 100%.
Bootstrap support for L0P8J4 as seed ortholog is 100%.

Group of orthologs #817. Best score 173 bits
Score difference with first non-orthologous sequence - L.chalumnae:173 P.jiroveci:173

H3AAY7              	100.00%		L0PAB2              	100.00%
Bootstrap support for H3AAY7 as seed ortholog is 100%.
Bootstrap support for L0PAB2 as seed ortholog is 100%.

Group of orthologs #818. Best score 173 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:124

H3AF23              	100.00%		L0PAS2              	100.00%
Bootstrap support for H3AF23 as seed ortholog is 97%.
Bootstrap support for L0PAS2 as seed ortholog is 100%.

Group of orthologs #819. Best score 173 bits
Score difference with first non-orthologous sequence - L.chalumnae:16 P.jiroveci:105

H3AGG8              	100.00%		L0PFJ8              	100.00%
Bootstrap support for H3AGG8 as seed ortholog is 66%.
Alternative seed ortholog is H3AVQ1 (16 bits away from this cluster)
Bootstrap support for L0PFJ8 as seed ortholog is 97%.

Group of orthologs #820. Best score 173 bits
Score difference with first non-orthologous sequence - L.chalumnae:173 P.jiroveci:173

H3AW82              	100.00%		L0PE43              	100.00%
Bootstrap support for H3AW82 as seed ortholog is 100%.
Bootstrap support for L0PE43 as seed ortholog is 100%.

Group of orthologs #821. Best score 172 bits
Score difference with first non-orthologous sequence - L.chalumnae:172 P.jiroveci:172

H3ACP6              	100.00%		L0PCE0              	100.00%
M3XI37              	23.16%		
H3AXM3              	13.05%		
Bootstrap support for H3ACP6 as seed ortholog is 100%.
Bootstrap support for L0PCE0 as seed ortholog is 100%.

Group of orthologs #822. Best score 172 bits
Score difference with first non-orthologous sequence - L.chalumnae:90 P.jiroveci:172

H2ZYC1              	100.00%		L0PD33              	100.00%
H3B821              	31.53%		
Bootstrap support for H2ZYC1 as seed ortholog is 98%.
Bootstrap support for L0PD33 as seed ortholog is 100%.

Group of orthologs #823. Best score 172 bits
Score difference with first non-orthologous sequence - L.chalumnae:172 P.jiroveci:172

H3AUE6              	100.00%		L0PD40              	100.00%
Bootstrap support for H3AUE6 as seed ortholog is 100%.
Bootstrap support for L0PD40 as seed ortholog is 100%.

Group of orthologs #824. Best score 171 bits
Score difference with first non-orthologous sequence - L.chalumnae:114 P.jiroveci:171

H3B5M9              	100.00%		L0PC66              	100.00%
H3ADF7              	43.34%		L0PBN8              	73.42%
Bootstrap support for H3B5M9 as seed ortholog is 100%.
Bootstrap support for L0PC66 as seed ortholog is 100%.

Group of orthologs #825. Best score 171 bits
Score difference with first non-orthologous sequence - L.chalumnae:171 P.jiroveci:171

H3AL79              	100.00%		L0PCH6              	100.00%
Bootstrap support for H3AL79 as seed ortholog is 100%.
Bootstrap support for L0PCH6 as seed ortholog is 100%.

Group of orthologs #826. Best score 171 bits
Score difference with first non-orthologous sequence - L.chalumnae:171 P.jiroveci:171

M3XI18              	100.00%		L0PFW4              	100.00%
Bootstrap support for M3XI18 as seed ortholog is 100%.
Bootstrap support for L0PFW4 as seed ortholog is 100%.

Group of orthologs #827. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H3B4E6              	100.00%		L0PFG0              	100.00%
H3BEW8              	71.39%		
H3A074              	31.49%		
Bootstrap support for H3B4E6 as seed ortholog is 100%.
Bootstrap support for L0PFG0 as seed ortholog is 100%.

Group of orthologs #828. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H2ZSQ9              	100.00%		L0P8C3              	100.00%
Bootstrap support for H2ZSQ9 as seed ortholog is 100%.
Bootstrap support for L0P8C3 as seed ortholog is 100%.

Group of orthologs #829. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H2ZTG2              	100.00%		L0PGJ8              	100.00%
Bootstrap support for H2ZTG2 as seed ortholog is 100%.
Bootstrap support for L0PGJ8 as seed ortholog is 100%.

Group of orthologs #830. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:54 P.jiroveci:130

H2ZXP5              	100.00%		L0PDG6              	100.00%
Bootstrap support for H2ZXP5 as seed ortholog is 93%.
Bootstrap support for L0PDG6 as seed ortholog is 99%.

Group of orthologs #831. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H3A519              	100.00%		L0P9N4              	100.00%
Bootstrap support for H3A519 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #832. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H3ACR5              	100.00%		L0PG54              	100.00%
Bootstrap support for H3ACR5 as seed ortholog is 100%.
Bootstrap support for L0PG54 as seed ortholog is 100%.

Group of orthologs #833. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:101 P.jiroveci:170

H3B2T7              	100.00%		L0P839              	100.00%
Bootstrap support for H3B2T7 as seed ortholog is 99%.
Bootstrap support for L0P839 as seed ortholog is 100%.

Group of orthologs #834. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H3B549              	100.00%		L0PGP5              	100.00%
Bootstrap support for H3B549 as seed ortholog is 100%.
Bootstrap support for L0PGP5 as seed ortholog is 100%.

Group of orthologs #835. Best score 170 bits
Score difference with first non-orthologous sequence - L.chalumnae:170 P.jiroveci:170

H3BGV2              	100.00%		L0PFN0              	100.00%
Bootstrap support for H3BGV2 as seed ortholog is 100%.
Bootstrap support for L0PFN0 as seed ortholog is 100%.

Group of orthologs #836. Best score 169 bits
Score difference with first non-orthologous sequence - L.chalumnae:169 P.jiroveci:169

H3A825              	100.00%		L0PA27              	100.00%
H3BGD2              	63.06%		
Bootstrap support for H3A825 as seed ortholog is 100%.
Bootstrap support for L0PA27 as seed ortholog is 100%.

Group of orthologs #837. Best score 169 bits
Score difference with first non-orthologous sequence - L.chalumnae:169 P.jiroveci:169

H2ZSY7              	100.00%		L0PA05              	100.00%
Bootstrap support for H2ZSY7 as seed ortholog is 100%.
Bootstrap support for L0PA05 as seed ortholog is 100%.

Group of orthologs #838. Best score 169 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:169

H3AUB6              	100.00%		L0PAJ6              	100.00%
Bootstrap support for H3AUB6 as seed ortholog is 99%.
Bootstrap support for L0PAJ6 as seed ortholog is 100%.

Group of orthologs #839. Best score 169 bits
Score difference with first non-orthologous sequence - L.chalumnae:123 P.jiroveci:125

H3BDA3              	100.00%		L0PC70              	100.00%
Bootstrap support for H3BDA3 as seed ortholog is 100%.
Bootstrap support for L0PC70 as seed ortholog is 100%.

Group of orthologs #840. Best score 168 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:91

H3A8K0              	100.00%		L0PEX6              	100.00%
H2ZW01              	15.95%		
Bootstrap support for H3A8K0 as seed ortholog is 99%.
Bootstrap support for L0PEX6 as seed ortholog is 99%.

Group of orthologs #841. Best score 168 bits
Score difference with first non-orthologous sequence - L.chalumnae:168 P.jiroveci:168

H3AJT1              	100.00%		L0PC20              	100.00%
H3BD74              	30.94%		
Bootstrap support for H3AJT1 as seed ortholog is 100%.
Bootstrap support for L0PC20 as seed ortholog is 100%.

Group of orthologs #842. Best score 168 bits
Score difference with first non-orthologous sequence - L.chalumnae:168 P.jiroveci:168

M3XHU7              	100.00%		L0PF66              	100.00%
H3AYY5              	47.77%		
Bootstrap support for M3XHU7 as seed ortholog is 100%.
Bootstrap support for L0PF66 as seed ortholog is 100%.

Group of orthologs #843. Best score 168 bits
Score difference with first non-orthologous sequence - L.chalumnae:82 P.jiroveci:168

H3A9G6              	100.00%		L0PD63              	100.00%
Bootstrap support for H3A9G6 as seed ortholog is 99%.
Bootstrap support for L0PD63 as seed ortholog is 100%.

Group of orthologs #844. Best score 168 bits
Score difference with first non-orthologous sequence - L.chalumnae:97 P.jiroveci:113

H3B6P2              	100.00%		L0PDB2              	100.00%
Bootstrap support for H3B6P2 as seed ortholog is 99%.
Bootstrap support for L0PDB2 as seed ortholog is 99%.

Group of orthologs #845. Best score 167 bits
Score difference with first non-orthologous sequence - L.chalumnae:167 P.jiroveci:167

H3ABX2              	100.00%		L0P8D9              	100.00%
Bootstrap support for H3ABX2 as seed ortholog is 100%.
Bootstrap support for L0P8D9 as seed ortholog is 100%.

Group of orthologs #846. Best score 167 bits
Score difference with first non-orthologous sequence - L.chalumnae:167 P.jiroveci:167

H3B6X7              	100.00%		L0P8V3              	100.00%
Bootstrap support for H3B6X7 as seed ortholog is 100%.
Bootstrap support for L0P8V3 as seed ortholog is 100%.

Group of orthologs #847. Best score 167 bits
Score difference with first non-orthologous sequence - L.chalumnae:167 P.jiroveci:167

H3B7X9              	100.00%		L0PEA1              	100.00%
Bootstrap support for H3B7X9 as seed ortholog is 100%.
Bootstrap support for L0PEA1 as seed ortholog is 100%.

Group of orthologs #848. Best score 166 bits
Score difference with first non-orthologous sequence - L.chalumnae:10 P.jiroveci:166

H3AMZ3              	100.00%		L0PAV2              	100.00%
Bootstrap support for H3AMZ3 as seed ortholog is 55%.
Alternative seed ortholog is H3B0L4 (10 bits away from this cluster)
Bootstrap support for L0PAV2 as seed ortholog is 100%.

Group of orthologs #849. Best score 166 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:166

H3AYS0              	100.00%		L0PBS3              	100.00%
Bootstrap support for H3AYS0 as seed ortholog is 96%.
Bootstrap support for L0PBS3 as seed ortholog is 100%.

Group of orthologs #850. Best score 166 bits
Score difference with first non-orthologous sequence - L.chalumnae:166 P.jiroveci:166

H3B9J9              	100.00%		L0PCH5              	100.00%
Bootstrap support for H3B9J9 as seed ortholog is 100%.
Bootstrap support for L0PCH5 as seed ortholog is 100%.

Group of orthologs #851. Best score 166 bits
Score difference with first non-orthologous sequence - L.chalumnae:166 P.jiroveci:166

H3BHU1              	100.00%		L0P8D5              	100.00%
Bootstrap support for H3BHU1 as seed ortholog is 100%.
Bootstrap support for L0P8D5 as seed ortholog is 100%.

Group of orthologs #852. Best score 165 bits
Score difference with first non-orthologous sequence - L.chalumnae:37 P.jiroveci:165

H2ZZP4              	100.00%		L0PBR7              	100.00%
H3A427              	66.67%		
H2ZS39              	64.76%		
H3A2S8              	60.00%		
H3A485              	54.29%		
H3A5E7              	31.43%		
H3AQ34              	12.38%		
Bootstrap support for H2ZZP4 as seed ortholog is 94%.
Bootstrap support for L0PBR7 as seed ortholog is 100%.

Group of orthologs #853. Best score 165 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:124

H3AVR2              	100.00%		L0PDJ7              	100.00%
H3BI91              	53.30%		
Bootstrap support for H3AVR2 as seed ortholog is 99%.
Bootstrap support for L0PDJ7 as seed ortholog is 99%.

Group of orthologs #854. Best score 165 bits
Score difference with first non-orthologous sequence - L.chalumnae:165 P.jiroveci:165

H3B274              	100.00%		L0PAG4              	100.00%
H3A8D8              	64.86%		
Bootstrap support for H3B274 as seed ortholog is 100%.
Bootstrap support for L0PAG4 as seed ortholog is 100%.

Group of orthologs #855. Best score 165 bits
Score difference with first non-orthologous sequence - L.chalumnae:165 P.jiroveci:165

H3B800              	100.00%		L0PCW8              	100.00%
Bootstrap support for H3B800 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #856. Best score 164 bits
Score difference with first non-orthologous sequence - L.chalumnae:164 P.jiroveci:164

H3ADQ1              	100.00%		L0PGK0              	100.00%
Bootstrap support for H3ADQ1 as seed ortholog is 100%.
Bootstrap support for L0PGK0 as seed ortholog is 100%.

Group of orthologs #857. Best score 164 bits
Score difference with first non-orthologous sequence - L.chalumnae:164 P.jiroveci:164

H3B542              	100.00%		L0PA78              	100.00%
Bootstrap support for H3B542 as seed ortholog is 100%.
Bootstrap support for L0PA78 as seed ortholog is 100%.

Group of orthologs #858. Best score 163 bits
Score difference with first non-orthologous sequence - L.chalumnae:18 P.jiroveci:163

H3ANP6              	100.00%		L0PFH2              	100.00%
H3AQG7              	47.61%		
H3BHD9              	30.68%		
Bootstrap support for H3ANP6 as seed ortholog is 59%.
Alternative seed ortholog is M3XKF9 (18 bits away from this cluster)
Bootstrap support for L0PFH2 as seed ortholog is 100%.

Group of orthologs #859. Best score 163 bits
Score difference with first non-orthologous sequence - L.chalumnae:163 P.jiroveci:163

H3B105              	100.00%		L0PDL8              	100.00%
                    	       		L0PD52              	90.91%
Bootstrap support for H3B105 as seed ortholog is 100%.
Bootstrap support for L0PDL8 as seed ortholog is 100%.

Group of orthologs #860. Best score 163 bits
Score difference with first non-orthologous sequence - L.chalumnae:72 P.jiroveci:82

H3AMG3              	100.00%		L0PB17              	100.00%
Bootstrap support for H3AMG3 as seed ortholog is 99%.
Bootstrap support for L0PB17 as seed ortholog is 99%.

Group of orthologs #861. Best score 163 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:163

H3B0Q9              	100.00%		L0P948              	100.00%
Bootstrap support for H3B0Q9 as seed ortholog is 99%.
Bootstrap support for L0P948 as seed ortholog is 100%.

Group of orthologs #862. Best score 163 bits
Score difference with first non-orthologous sequence - L.chalumnae:163 P.jiroveci:163

H3B9W2              	100.00%		L0PF97              	100.00%
Bootstrap support for H3B9W2 as seed ortholog is 100%.
Bootstrap support for L0PF97 as seed ortholog is 100%.

Group of orthologs #863. Best score 162 bits
Score difference with first non-orthologous sequence - L.chalumnae:162 P.jiroveci:162

H3AFC4              	100.00%		L0PFW9              	100.00%
H3BE43              	45.73%		
Bootstrap support for H3AFC4 as seed ortholog is 100%.
Bootstrap support for L0PFW9 as seed ortholog is 100%.

Group of orthologs #864. Best score 162 bits
Score difference with first non-orthologous sequence - L.chalumnae:75 P.jiroveci:162

H3AFZ7              	100.00%		L0PBU8              	100.00%
Bootstrap support for H3AFZ7 as seed ortholog is 52%.
Alternative seed ortholog is H3B7A3 (75 bits away from this cluster)
Bootstrap support for L0PBU8 as seed ortholog is 100%.

Group of orthologs #865. Best score 162 bits
Score difference with first non-orthologous sequence - L.chalumnae:162 P.jiroveci:162

H3B2B4              	100.00%		L0PC80              	100.00%
Bootstrap support for H3B2B4 as seed ortholog is 100%.
Bootstrap support for L0PC80 as seed ortholog is 100%.

Group of orthologs #866. Best score 162 bits
Score difference with first non-orthologous sequence - L.chalumnae:162 P.jiroveci:162

H3BCB1              	100.00%		L0PFY6              	100.00%
Bootstrap support for H3BCB1 as seed ortholog is 100%.
Bootstrap support for L0PFY6 as seed ortholog is 100%.

Group of orthologs #867. Best score 161 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:109

M3XJS0              	100.00%		L0PE79              	100.00%
H3BGF4              	74.55%		
H3BGF2              	73.18%		
H3ARU2              	40.91%		
H3AZ40              	17.73%		
H3BGQ6              	17.73%		
H3ATJ5              	16.36%		
H3BC69              	14.55%		
H3AP43              	12.73%		
H3A9L5              	11.36%		
H3B6M7              	9.09%		
H3B9J7              	6.82%		
H3A7B2              	5.91%		
H3A8C2              	5.45%		
H3B545              	5.00%		
Bootstrap support for M3XJS0 as seed ortholog is 98%.
Bootstrap support for L0PE79 as seed ortholog is 99%.

Group of orthologs #868. Best score 161 bits
Score difference with first non-orthologous sequence - L.chalumnae:161 P.jiroveci:115

H3AK36              	100.00%		L0P7D0              	100.00%
H3B455              	28.93%		
Bootstrap support for H3AK36 as seed ortholog is 100%.
Bootstrap support for L0P7D0 as seed ortholog is 99%.

Group of orthologs #869. Best score 161 bits
Score difference with first non-orthologous sequence - L.chalumnae:161 P.jiroveci:161

H3BAF3              	100.00%		L0P7Y5              	100.00%
H3B6J5              	36.09%		
Bootstrap support for H3BAF3 as seed ortholog is 100%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #870. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:160

M3XJK8              	100.00%		L0PAW6              	100.00%
H3AZK4              	17.83%		
H3APY6              	10.99%		
M3XIR7              	6.28%		
Bootstrap support for M3XJK8 as seed ortholog is 100%.
Bootstrap support for L0PAW6 as seed ortholog is 100%.

Group of orthologs #871. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:160

H3A5R1              	100.00%		L0PCA8              	100.00%
H3ADD1              	95.87%		
Bootstrap support for H3A5R1 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #872. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:160

H3AY18              	100.00%		L0PGF9              	100.00%
H3AN39              	60.97%		
Bootstrap support for H3AY18 as seed ortholog is 100%.
Bootstrap support for L0PGF9 as seed ortholog is 100%.

Group of orthologs #873. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:45

H3A2W0              	100.00%		L0PCJ0              	100.00%
Bootstrap support for H3A2W0 as seed ortholog is 100%.
Bootstrap support for L0PCJ0 as seed ortholog is 77%.

Group of orthologs #874. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:160

H3A242              	100.00%		L0PE02              	100.00%
Bootstrap support for H3A242 as seed ortholog is 100%.
Bootstrap support for L0PE02 as seed ortholog is 100%.

Group of orthologs #875. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:17 P.jiroveci:160

H3AQV2              	100.00%		L0PGW6              	100.00%
Bootstrap support for H3AQV2 as seed ortholog is 71%.
Alternative seed ortholog is H3AEH2 (17 bits away from this cluster)
Bootstrap support for L0PGW6 as seed ortholog is 100%.

Group of orthologs #876. Best score 160 bits
Score difference with first non-orthologous sequence - L.chalumnae:160 P.jiroveci:160

H3B904              	100.00%		L0PFL1              	100.00%
Bootstrap support for H3B904 as seed ortholog is 100%.
Bootstrap support for L0PFL1 as seed ortholog is 100%.

Group of orthologs #877. Best score 159 bits
Score difference with first non-orthologous sequence - L.chalumnae:20 P.jiroveci:159

H3ASI0              	100.00%		L0PFZ5              	100.00%
H2ZUW2              	58.15%		
H3AY19              	53.30%		
Bootstrap support for H3ASI0 as seed ortholog is 66%.
Alternative seed ortholog is H3B0X0 (20 bits away from this cluster)
Bootstrap support for L0PFZ5 as seed ortholog is 100%.

Group of orthologs #878. Best score 159 bits
Score difference with first non-orthologous sequence - L.chalumnae:159 P.jiroveci:159

H3B655              	100.00%		L0PFY9              	100.00%
H3AS63              	56.00%		
Bootstrap support for H3B655 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #879. Best score 159 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:159

H3ACD7              	100.00%		L0P9D2              	100.00%
Bootstrap support for H3ACD7 as seed ortholog is 99%.
Bootstrap support for L0P9D2 as seed ortholog is 100%.

Group of orthologs #880. Best score 159 bits
Score difference with first non-orthologous sequence - L.chalumnae:159 P.jiroveci:159

H3B0T9              	100.00%		L0PB62              	100.00%
Bootstrap support for H3B0T9 as seed ortholog is 100%.
Bootstrap support for L0PB62 as seed ortholog is 100%.

Group of orthologs #881. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3AMD1              	100.00%		L0PFP1              	100.00%
H3B8W2              	35.00%		L0PC71              	75.50%
Bootstrap support for H3AMD1 as seed ortholog is 100%.
Bootstrap support for L0PFP1 as seed ortholog is 100%.

Group of orthologs #882. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H2ZSP1              	100.00%		L0PBI8              	100.00%
H3BD58              	33.46%		
Bootstrap support for H2ZSP1 as seed ortholog is 100%.
Bootstrap support for L0PBI8 as seed ortholog is 100%.

Group of orthologs #883. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:92

H3A7T6              	100.00%		L0P7L3              	100.00%
H3AS02              	70.50%		
Bootstrap support for H3A7T6 as seed ortholog is 99%.
Bootstrap support for L0P7L3 as seed ortholog is 99%.

Group of orthologs #884. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3A6I2              	100.00%		L0PF42              	100.00%
                    	       		L0PD01              	98.48%
Bootstrap support for H3A6I2 as seed ortholog is 100%.
Bootstrap support for L0PF42 as seed ortholog is 100%.

Group of orthologs #885. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3AC68              	100.00%		L0P7Z9              	100.00%
Bootstrap support for H3AC68 as seed ortholog is 100%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #886. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:32 P.jiroveci:158

H3API9              	100.00%		L0P7E9              	100.00%
Bootstrap support for H3API9 as seed ortholog is 88%.
Bootstrap support for L0P7E9 as seed ortholog is 100%.

Group of orthologs #887. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3AK71              	100.00%		L0PF39              	100.00%
Bootstrap support for H3AK71 as seed ortholog is 100%.
Bootstrap support for L0PF39 as seed ortholog is 100%.

Group of orthologs #888. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3AMG5              	100.00%		L0PEN3              	100.00%
Bootstrap support for H3AMG5 as seed ortholog is 100%.
Bootstrap support for L0PEN3 as seed ortholog is 100%.

Group of orthologs #889. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3B183              	100.00%		L0P8H6              	100.00%
Bootstrap support for H3B183 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #890. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:109

H3B665              	100.00%		L0PBF9              	100.00%
Bootstrap support for H3B665 as seed ortholog is 98%.
Bootstrap support for L0PBF9 as seed ortholog is 99%.

Group of orthologs #891. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3B9Z7              	100.00%		L0P872              	100.00%
Bootstrap support for H3B9Z7 as seed ortholog is 100%.
Bootstrap support for L0P872 as seed ortholog is 100%.

Group of orthologs #892. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3B814              	100.00%		L0PDA4              	100.00%
Bootstrap support for H3B814 as seed ortholog is 100%.
Bootstrap support for L0PDA4 as seed ortholog is 100%.

Group of orthologs #893. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3B5P7              	100.00%		L0PFP7              	100.00%
Bootstrap support for H3B5P7 as seed ortholog is 100%.
Bootstrap support for L0PFP7 as seed ortholog is 100%.

Group of orthologs #894. Best score 158 bits
Score difference with first non-orthologous sequence - L.chalumnae:158 P.jiroveci:158

H3BIH8              	100.00%		L0PD76              	100.00%
Bootstrap support for H3BIH8 as seed ortholog is 100%.
Bootstrap support for L0PD76 as seed ortholog is 100%.

Group of orthologs #895. Best score 157 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:157

H3AGS7              	100.00%		L0P8S1              	100.00%
H3B840              	46.24%		
H2ZWX7              	42.20%		
Bootstrap support for H3AGS7 as seed ortholog is 100%.
Bootstrap support for L0P8S1 as seed ortholog is 100%.

Group of orthologs #896. Best score 157 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:157

H3AJU0              	100.00%		L0PCP0              	100.00%
Bootstrap support for H3AJU0 as seed ortholog is 100%.
Bootstrap support for L0PCP0 as seed ortholog is 100%.

Group of orthologs #897. Best score 157 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:157

H3ALY6              	100.00%		L0PBI9              	100.00%
Bootstrap support for H3ALY6 as seed ortholog is 100%.
Bootstrap support for L0PBI9 as seed ortholog is 100%.

Group of orthologs #898. Best score 157 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:47

H3AIQ9              	100.00%		L0PGP9              	100.00%
Bootstrap support for H3AIQ9 as seed ortholog is 100%.
Bootstrap support for L0PGP9 as seed ortholog is 93%.

Group of orthologs #899. Best score 157 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:157

H3B0Q2              	100.00%		L0PEN8              	100.00%
Bootstrap support for H3B0Q2 as seed ortholog is 100%.
Bootstrap support for L0PEN8 as seed ortholog is 100%.

Group of orthologs #900. Best score 157 bits
Score difference with first non-orthologous sequence - L.chalumnae:157 P.jiroveci:157

H3BCJ6              	100.00%		L0PEL6              	100.00%
Bootstrap support for H3BCJ6 as seed ortholog is 100%.
Bootstrap support for L0PEL6 as seed ortholog is 100%.

Group of orthologs #901. Best score 156 bits
Score difference with first non-orthologous sequence - L.chalumnae:156 P.jiroveci:114

H3A6P0              	100.00%		L0P9W6              	100.00%
Bootstrap support for H3A6P0 as seed ortholog is 100%.
Bootstrap support for L0P9W6 as seed ortholog is 100%.

Group of orthologs #902. Best score 156 bits
Score difference with first non-orthologous sequence - L.chalumnae:156 P.jiroveci:156

H3AEB3              	100.00%		L0PF65              	100.00%
Bootstrap support for H3AEB3 as seed ortholog is 100%.
Bootstrap support for L0PF65 as seed ortholog is 100%.

Group of orthologs #903. Best score 156 bits
Score difference with first non-orthologous sequence - L.chalumnae:156 P.jiroveci:156

H3B293              	100.00%		L0PD11              	100.00%
Bootstrap support for H3B293 as seed ortholog is 100%.
Bootstrap support for L0PD11 as seed ortholog is 100%.

Group of orthologs #904. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:155 P.jiroveci:155

H3AGQ4              	100.00%		L0PDH1              	100.00%
H3ABM3              	93.33%		
Bootstrap support for H3AGQ4 as seed ortholog is 100%.
Bootstrap support for L0PDH1 as seed ortholog is 100%.

Group of orthologs #905. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:33 P.jiroveci:155

H3BBV9              	100.00%		L0PC81              	100.00%
H3B7V4              	39.48%		
Bootstrap support for H3BBV9 as seed ortholog is 80%.
Bootstrap support for L0PC81 as seed ortholog is 100%.

Group of orthologs #906. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:155

H2ZXQ5              	100.00%		L0PDP9              	100.00%
Bootstrap support for H2ZXQ5 as seed ortholog is 99%.
Bootstrap support for L0PDP9 as seed ortholog is 100%.

Group of orthologs #907. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:155 P.jiroveci:155

H3A5C2              	100.00%		L0P9X0              	100.00%
Bootstrap support for H3A5C2 as seed ortholog is 100%.
Bootstrap support for L0P9X0 as seed ortholog is 100%.

Group of orthologs #908. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:155 P.jiroveci:155

H3AWI4              	100.00%		L0P799              	100.00%
Bootstrap support for H3AWI4 as seed ortholog is 100%.
Bootstrap support for L0P799 as seed ortholog is 100%.

Group of orthologs #909. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:155 P.jiroveci:155

H3AVN8              	100.00%		L0PEC9              	100.00%
Bootstrap support for H3AVN8 as seed ortholog is 100%.
Bootstrap support for L0PEC9 as seed ortholog is 100%.

Group of orthologs #910. Best score 155 bits
Score difference with first non-orthologous sequence - L.chalumnae:155 P.jiroveci:155

H3B4K2              	100.00%		L0PBL1              	100.00%
Bootstrap support for H3B4K2 as seed ortholog is 100%.
Bootstrap support for L0PBL1 as seed ortholog is 100%.

Group of orthologs #911. Best score 154 bits
Score difference with first non-orthologous sequence - L.chalumnae:154 P.jiroveci:154

H3AAY2              	100.00%		L0PCG3              	100.00%
Bootstrap support for H3AAY2 as seed ortholog is 100%.
Bootstrap support for L0PCG3 as seed ortholog is 100%.

Group of orthologs #912. Best score 154 bits
Score difference with first non-orthologous sequence - L.chalumnae:154 P.jiroveci:154

H3AJY6              	100.00%		L0PDX9              	100.00%
Bootstrap support for H3AJY6 as seed ortholog is 100%.
Bootstrap support for L0PDX9 as seed ortholog is 100%.

Group of orthologs #913. Best score 154 bits
Score difference with first non-orthologous sequence - L.chalumnae:154 P.jiroveci:154

H3B195              	100.00%		L0P8F3              	100.00%
Bootstrap support for H3B195 as seed ortholog is 100%.
Bootstrap support for L0P8F3 as seed ortholog is 100%.

Group of orthologs #914. Best score 153 bits
Score difference with first non-orthologous sequence - L.chalumnae:153 P.jiroveci:153

H3BF37              	100.00%		L0PFX0              	100.00%
H3AC34              	55.13%		
Bootstrap support for H3BF37 as seed ortholog is 100%.
Bootstrap support for L0PFX0 as seed ortholog is 100%.

Group of orthologs #915. Best score 153 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:153

H3A667              	100.00%		L0PE03              	100.00%
Bootstrap support for H3A667 as seed ortholog is 99%.
Bootstrap support for L0PE03 as seed ortholog is 100%.

Group of orthologs #916. Best score 153 bits
Score difference with first non-orthologous sequence - L.chalumnae:153 P.jiroveci:153

H3AH94              	100.00%		L0PEV3              	100.00%
Bootstrap support for H3AH94 as seed ortholog is 100%.
Bootstrap support for L0PEV3 as seed ortholog is 100%.

Group of orthologs #917. Best score 153 bits
Score difference with first non-orthologous sequence - L.chalumnae:153 P.jiroveci:153

H3ASE1              	100.00%		L0P8Y0              	100.00%
Bootstrap support for H3ASE1 as seed ortholog is 100%.
Bootstrap support for L0P8Y0 as seed ortholog is 100%.

Group of orthologs #918. Best score 153 bits
Score difference with first non-orthologous sequence - L.chalumnae:153 P.jiroveci:153

M3XHJ3              	100.00%		L0PCX3              	100.00%
Bootstrap support for M3XHJ3 as seed ortholog is 100%.
Bootstrap support for L0PCX3 as seed ortholog is 100%.

Group of orthologs #919. Best score 152 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:152

H3AQN7              	100.00%		L0PB34              	100.00%
H3A7G1              	44.95%		
Bootstrap support for H3AQN7 as seed ortholog is 100%.
Bootstrap support for L0PB34 as seed ortholog is 100%.

Group of orthologs #920. Best score 152 bits
Score difference with first non-orthologous sequence - L.chalumnae:152 P.jiroveci:152

H2ZTB8              	100.00%		L0P7V8              	100.00%
Bootstrap support for H2ZTB8 as seed ortholog is 100%.
Bootstrap support for L0P7V8 as seed ortholog is 100%.

Group of orthologs #921. Best score 152 bits
Score difference with first non-orthologous sequence - L.chalumnae:152 P.jiroveci:152

H3ABP8              	100.00%		L0P9D1              	100.00%
Bootstrap support for H3ABP8 as seed ortholog is 100%.
Bootstrap support for L0P9D1 as seed ortholog is 100%.

Group of orthologs #922. Best score 152 bits
Score difference with first non-orthologous sequence - L.chalumnae:152 P.jiroveci:152

H3B886              	100.00%		L0P8P5              	100.00%
Bootstrap support for H3B886 as seed ortholog is 100%.
Bootstrap support for L0P8P5 as seed ortholog is 100%.

Group of orthologs #923. Best score 152 bits
Score difference with first non-orthologous sequence - L.chalumnae:152 P.jiroveci:152

M3XKK5              	100.00%		L0P7V4              	100.00%
Bootstrap support for M3XKK5 as seed ortholog is 100%.
Bootstrap support for L0P7V4 as seed ortholog is 100%.

Group of orthologs #924. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3A3W0              	100.00%		L0PI55              	100.00%
                    	       		L0P840              	83.64%
Bootstrap support for H3A3W0 as seed ortholog is 100%.
Bootstrap support for L0PI55 as seed ortholog is 100%.

Group of orthologs #925. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3AJE9              	100.00%		L0P8Z0              	100.00%
                    	       		L0PC60              	96.73%
Bootstrap support for H3AJE9 as seed ortholog is 100%.
Bootstrap support for L0P8Z0 as seed ortholog is 100%.

Group of orthologs #926. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3AMA5              	100.00%		L0PE09              	100.00%
H3A7M7              	8.45%		
Bootstrap support for H3AMA5 as seed ortholog is 100%.
Bootstrap support for L0PE09 as seed ortholog is 100%.

Group of orthologs #927. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:151

H3AFW8              	100.00%		L0PDN5              	100.00%
Bootstrap support for H3AFW8 as seed ortholog is 98%.
Bootstrap support for L0PDN5 as seed ortholog is 100%.

Group of orthologs #928. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3AS15              	100.00%		L0PC24              	100.00%
Bootstrap support for H3AS15 as seed ortholog is 100%.
Bootstrap support for L0PC24 as seed ortholog is 100%.

Group of orthologs #929. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3ATQ3              	100.00%		L0PB66              	100.00%
Bootstrap support for H3ATQ3 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #930. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3AWQ0              	100.00%		L0PEG0              	100.00%
Bootstrap support for H3AWQ0 as seed ortholog is 100%.
Bootstrap support for L0PEG0 as seed ortholog is 100%.

Group of orthologs #931. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

M3XJF6              	100.00%		L0PA48              	100.00%
Bootstrap support for M3XJF6 as seed ortholog is 100%.
Bootstrap support for L0PA48 as seed ortholog is 100%.

Group of orthologs #932. Best score 151 bits
Score difference with first non-orthologous sequence - L.chalumnae:151 P.jiroveci:151

H3BI71              	100.00%		L0PEV9              	100.00%
Bootstrap support for H3BI71 as seed ortholog is 100%.
Bootstrap support for L0PEV9 as seed ortholog is 100%.

Group of orthologs #933. Best score 150 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:87

H3A233              	100.00%		L0PDE1              	100.00%
H3B6Q1              	8.50%		
Bootstrap support for H3A233 as seed ortholog is 99%.
Bootstrap support for L0PDE1 as seed ortholog is 99%.

Group of orthologs #934. Best score 150 bits
Score difference with first non-orthologous sequence - L.chalumnae:150 P.jiroveci:150

H3ALW7              	100.00%		L0P9U0              	100.00%
Bootstrap support for H3ALW7 as seed ortholog is 100%.
Bootstrap support for L0P9U0 as seed ortholog is 100%.

Group of orthologs #935. Best score 150 bits
Score difference with first non-orthologous sequence - L.chalumnae:49 P.jiroveci:150

H3APP7              	100.00%		L0P903              	100.00%
Bootstrap support for H3APP7 as seed ortholog is 92%.
Bootstrap support for L0P903 as seed ortholog is 100%.

Group of orthologs #936. Best score 150 bits
Score difference with first non-orthologous sequence - L.chalumnae:150 P.jiroveci:150

H3APH1              	100.00%		L0PDV9              	100.00%
Bootstrap support for H3APH1 as seed ortholog is 100%.
Bootstrap support for L0PDV9 as seed ortholog is 100%.

Group of orthologs #937. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:26 P.jiroveci:57

H2ZWL7              	100.00%		L0PGT3              	100.00%
H3BAE0              	55.86%		
Bootstrap support for H2ZWL7 as seed ortholog is 86%.
Bootstrap support for L0PGT3 as seed ortholog is 98%.

Group of orthologs #938. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:149 P.jiroveci:149

H3AZ27              	100.00%		L0PDR9              	100.00%
                    	       		L0P8I3              	72.39%
Bootstrap support for H3AZ27 as seed ortholog is 100%.
Bootstrap support for L0PDR9 as seed ortholog is 100%.

Group of orthologs #939. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:149

H2ZU97              	100.00%		L0PBX9              	100.00%
Bootstrap support for H2ZU97 as seed ortholog is 81%.
Bootstrap support for L0PBX9 as seed ortholog is 100%.

Group of orthologs #940. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:149 P.jiroveci:149

H3AL24              	100.00%		L0P7A4              	100.00%
Bootstrap support for H3AL24 as seed ortholog is 100%.
Bootstrap support for L0P7A4 as seed ortholog is 100%.

Group of orthologs #941. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:149 P.jiroveci:149

H3B6U6              	100.00%		L0P9F5              	100.00%
Bootstrap support for H3B6U6 as seed ortholog is 100%.
Bootstrap support for L0P9F5 as seed ortholog is 100%.

Group of orthologs #942. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:149

H3BG24              	100.00%		L0P9D6              	100.00%
Bootstrap support for H3BG24 as seed ortholog is 99%.
Bootstrap support for L0P9D6 as seed ortholog is 100%.

Group of orthologs #943. Best score 149 bits
Score difference with first non-orthologous sequence - L.chalumnae:149 P.jiroveci:149

H3BGK8              	100.00%		L0PCP9              	100.00%
Bootstrap support for H3BGK8 as seed ortholog is 100%.
Bootstrap support for L0PCP9 as seed ortholog is 100%.

Group of orthologs #944. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:20 P.jiroveci:94

H3AHQ9              	100.00%		L0PDL7              	100.00%
H3AXT0              	21.15%		
H3AYA0              	20.19%		
H3BEE5              	10.58%		
H3BGH0              	8.17%		
Bootstrap support for H3AHQ9 as seed ortholog is 96%.
Bootstrap support for L0PDL7 as seed ortholog is 100%.

Group of orthologs #945. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:37 P.jiroveci:148

H3B8P8              	100.00%		L0PG65              	100.00%
H3A457              	6.69%		
H3A843              	5.83%		
H3A5K2              	5.66%		
Bootstrap support for H3B8P8 as seed ortholog is 82%.
Bootstrap support for L0PG65 as seed ortholog is 100%.

Group of orthologs #946. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:148 P.jiroveci:148

H3AB44              	100.00%		L0P733              	100.00%
Bootstrap support for H3AB44 as seed ortholog is 100%.
Bootstrap support for L0P733 as seed ortholog is 100%.

Group of orthologs #947. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:148 P.jiroveci:148

H3A5P1              	100.00%		L0PFQ7              	100.00%
Bootstrap support for H3A5P1 as seed ortholog is 100%.
Bootstrap support for L0PFQ7 as seed ortholog is 100%.

Group of orthologs #948. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:148 P.jiroveci:148

H3AQK0              	100.00%		L0P780              	100.00%
Bootstrap support for H3AQK0 as seed ortholog is 100%.
Bootstrap support for L0P780 as seed ortholog is 100%.

Group of orthologs #949. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:148 P.jiroveci:148

H3AQ54              	100.00%		L0PGR5              	100.00%
Bootstrap support for H3AQ54 as seed ortholog is 100%.
Bootstrap support for L0PGR5 as seed ortholog is 100%.

Group of orthologs #950. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:69 P.jiroveci:148

H3AY74              	100.00%		L0PBZ4              	100.00%
Bootstrap support for H3AY74 as seed ortholog is 99%.
Bootstrap support for L0PBZ4 as seed ortholog is 100%.

Group of orthologs #951. Best score 148 bits
Score difference with first non-orthologous sequence - L.chalumnae:148 P.jiroveci:148

H3BFH2              	100.00%		L0PFG9              	100.00%
Bootstrap support for H3BFH2 as seed ortholog is 100%.
Bootstrap support for L0PFG9 as seed ortholog is 100%.

Group of orthologs #952. Best score 147 bits
Score difference with first non-orthologous sequence - L.chalumnae:147 P.jiroveci:147

H3A0N6              	100.00%		L0PEB8              	100.00%
H3B3I2              	45.55%		
Bootstrap support for H3A0N6 as seed ortholog is 100%.
Bootstrap support for L0PEB8 as seed ortholog is 100%.

Group of orthologs #953. Best score 147 bits
Score difference with first non-orthologous sequence - L.chalumnae:36 P.jiroveci:147

H3AWQ3              	100.00%		L0P963              	100.00%
Bootstrap support for H3AWQ3 as seed ortholog is 84%.
Bootstrap support for L0P963 as seed ortholog is 100%.

Group of orthologs #954. Best score 147 bits
Score difference with first non-orthologous sequence - L.chalumnae:147 P.jiroveci:147

H3AVR8              	100.00%		L0PEX0              	100.00%
Bootstrap support for H3AVR8 as seed ortholog is 100%.
Bootstrap support for L0PEX0 as seed ortholog is 100%.

Group of orthologs #955. Best score 146 bits
Score difference with first non-orthologous sequence - L.chalumnae:61 P.jiroveci:48

H2ZW44              	100.00%		L0P9Y3              	100.00%
H3ARK1              	61.18%		
H3AQ78              	50.65%		
M3XGT8              	50.22%		
Bootstrap support for H2ZW44 as seed ortholog is 93%.
Bootstrap support for L0P9Y3 as seed ortholog is 83%.

Group of orthologs #956. Best score 146 bits
Score difference with first non-orthologous sequence - L.chalumnae:146 P.jiroveci:146

H3AUD3              	100.00%		L0P7C8              	100.00%
H3AP45              	33.54%		
Bootstrap support for H3AUD3 as seed ortholog is 100%.
Bootstrap support for L0P7C8 as seed ortholog is 100%.

Group of orthologs #957. Best score 146 bits
Score difference with first non-orthologous sequence - L.chalumnae:146 P.jiroveci:146

H2ZTI6              	100.00%		L0P9F2              	100.00%
Bootstrap support for H2ZTI6 as seed ortholog is 100%.
Bootstrap support for L0P9F2 as seed ortholog is 100%.

Group of orthologs #958. Best score 146 bits
Score difference with first non-orthologous sequence - L.chalumnae:146 P.jiroveci:146

H3BID0              	100.00%		L0P7U2              	100.00%
Bootstrap support for H3BID0 as seed ortholog is 100%.
Bootstrap support for L0P7U2 as seed ortholog is 100%.

Group of orthologs #959. Best score 145 bits
Score difference with first non-orthologous sequence - L.chalumnae:145 P.jiroveci:145

H3A2C5              	100.00%		L0P9G6              	100.00%
Bootstrap support for H3A2C5 as seed ortholog is 100%.
Bootstrap support for L0P9G6 as seed ortholog is 100%.

Group of orthologs #960. Best score 145 bits
Score difference with first non-orthologous sequence - L.chalumnae:145 P.jiroveci:145

H3BIR1              	100.00%		L0P778              	100.00%
Bootstrap support for H3BIR1 as seed ortholog is 100%.
Bootstrap support for L0P778 as seed ortholog is 100%.

Group of orthologs #961. Best score 144 bits
Score difference with first non-orthologous sequence - L.chalumnae:144 P.jiroveci:144

H3A2U8              	100.00%		L0PDW9              	100.00%
H3B4Q3              	100.00%		
Bootstrap support for H3A2U8 as seed ortholog is 100%.
Bootstrap support for H3B4Q3 as seed ortholog is 100%.
Bootstrap support for L0PDW9 as seed ortholog is 100%.

Group of orthologs #962. Best score 144 bits
Score difference with first non-orthologous sequence - L.chalumnae:65 P.jiroveci:144

H2ZVQ1              	100.00%		L0P800              	100.00%
Bootstrap support for H2ZVQ1 as seed ortholog is 99%.
Bootstrap support for L0P800 as seed ortholog is 100%.

Group of orthologs #963. Best score 144 bits
Score difference with first non-orthologous sequence - L.chalumnae:144 P.jiroveci:144

H3BCU7              	100.00%		L0P852              	100.00%
Bootstrap support for H3BCU7 as seed ortholog is 100%.
Bootstrap support for L0P852 as seed ortholog is 100%.

Group of orthologs #964. Best score 144 bits
Score difference with first non-orthologous sequence - L.chalumnae:42 P.jiroveci:144

H3BBU3              	100.00%		L0PCI0              	100.00%
Bootstrap support for H3BBU3 as seed ortholog is 79%.
Bootstrap support for L0PCI0 as seed ortholog is 100%.

Group of orthologs #965. Best score 144 bits
Score difference with first non-orthologous sequence - L.chalumnae:144 P.jiroveci:144

M3XLB8              	100.00%		L0P9T1              	100.00%
Bootstrap support for M3XLB8 as seed ortholog is 100%.
Bootstrap support for L0P9T1 as seed ortholog is 100%.

Group of orthologs #966. Best score 143 bits
Score difference with first non-orthologous sequence - L.chalumnae:143 P.jiroveci:143

H3AQ84              	100.00%		L0PFZ7              	100.00%
H3A5W3              	56.58%		
Bootstrap support for H3AQ84 as seed ortholog is 100%.
Bootstrap support for L0PFZ7 as seed ortholog is 100%.

Group of orthologs #967. Best score 143 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:99

H3AM59              	100.00%		L0PA67              	100.00%
Bootstrap support for H3AM59 as seed ortholog is 99%.
Bootstrap support for L0PA67 as seed ortholog is 99%.

Group of orthologs #968. Best score 143 bits
Score difference with first non-orthologous sequence - L.chalumnae:143 P.jiroveci:143

H3AUY6              	100.00%		L0P8G7              	100.00%
Bootstrap support for H3AUY6 as seed ortholog is 100%.
Bootstrap support for L0P8G7 as seed ortholog is 100%.

Group of orthologs #969. Best score 143 bits
Score difference with first non-orthologous sequence - L.chalumnae:143 P.jiroveci:143

H3B267              	100.00%		L0PG38              	100.00%
Bootstrap support for H3B267 as seed ortholog is 100%.
Bootstrap support for L0PG38 as seed ortholog is 100%.

Group of orthologs #970. Best score 143 bits
Score difference with first non-orthologous sequence - L.chalumnae:143 P.jiroveci:143

H3BDW3              	100.00%		L0P9Y7              	100.00%
Bootstrap support for H3BDW3 as seed ortholog is 100%.
Bootstrap support for L0P9Y7 as seed ortholog is 100%.

Group of orthologs #971. Best score 142 bits
Score difference with first non-orthologous sequence - L.chalumnae:142 P.jiroveci:142

H3ATT1              	100.00%		L0PE36              	100.00%
H3AWG8              	46.84%		
Bootstrap support for H3ATT1 as seed ortholog is 100%.
Bootstrap support for L0PE36 as seed ortholog is 100%.

Group of orthologs #972. Best score 142 bits
Score difference with first non-orthologous sequence - L.chalumnae:142 P.jiroveci:142

H3BH28              	100.00%		L0P9G8              	100.00%
                    	       		L0PDI0              	55.45%
Bootstrap support for H3BH28 as seed ortholog is 100%.
Bootstrap support for L0P9G8 as seed ortholog is 100%.

Group of orthologs #973. Best score 142 bits
Score difference with first non-orthologous sequence - L.chalumnae:142 P.jiroveci:142

H3A8N6              	100.00%		L0PBG3              	100.00%
Bootstrap support for H3A8N6 as seed ortholog is 100%.
Bootstrap support for L0PBG3 as seed ortholog is 100%.

Group of orthologs #974. Best score 142 bits
Score difference with first non-orthologous sequence - L.chalumnae:90 P.jiroveci:142

H3B128              	100.00%		L0PDY2              	100.00%
Bootstrap support for H3B128 as seed ortholog is 99%.
Bootstrap support for L0PDY2 as seed ortholog is 100%.

Group of orthologs #975. Best score 142 bits
Score difference with first non-orthologous sequence - L.chalumnae:142 P.jiroveci:142

H3B869              	100.00%		L0PFS7              	100.00%
Bootstrap support for H3B869 as seed ortholog is 100%.
Bootstrap support for L0PFS7 as seed ortholog is 100%.

Group of orthologs #976. Best score 142 bits
Score difference with first non-orthologous sequence - L.chalumnae:142 P.jiroveci:142

H3BIK0              	100.00%		L0PCC8              	100.00%
Bootstrap support for H3BIK0 as seed ortholog is 100%.
Bootstrap support for L0PCC8 as seed ortholog is 100%.

Group of orthologs #977. Best score 141 bits
Score difference with first non-orthologous sequence - L.chalumnae:83 P.jiroveci:50

H3ATA4              	100.00%		L0PFG2              	100.00%
H3ATK9              	27.24%		
Bootstrap support for H3ATA4 as seed ortholog is 99%.
Bootstrap support for L0PFG2 as seed ortholog is 96%.

Group of orthologs #978. Best score 141 bits
Score difference with first non-orthologous sequence - L.chalumnae:141 P.jiroveci:141

H3BG00              	100.00%		L0PAX2              	100.00%
Bootstrap support for H3BG00 as seed ortholog is 100%.
Bootstrap support for L0PAX2 as seed ortholog is 100%.

Group of orthologs #979. Best score 141 bits
Score difference with first non-orthologous sequence - L.chalumnae:41 P.jiroveci:141

M3XKD0              	100.00%		L0PF33              	100.00%
Bootstrap support for M3XKD0 as seed ortholog is 98%.
Bootstrap support for L0PF33 as seed ortholog is 100%.

Group of orthologs #980. Best score 140 bits
Score difference with first non-orthologous sequence - L.chalumnae:97 P.jiroveci:140

H3APW7              	100.00%		L0PBX0              	100.00%
H2ZRM6              	30.34%		
Bootstrap support for H3APW7 as seed ortholog is 99%.
Bootstrap support for L0PBX0 as seed ortholog is 100%.

Group of orthologs #981. Best score 140 bits
Score difference with first non-orthologous sequence - L.chalumnae:140 P.jiroveci:140

H3A5B8              	100.00%		L0PA83              	100.00%
Bootstrap support for H3A5B8 as seed ortholog is 100%.
Bootstrap support for L0PA83 as seed ortholog is 100%.

Group of orthologs #982. Best score 140 bits
Score difference with first non-orthologous sequence - L.chalumnae:140 P.jiroveci:140

H3BH98              	100.00%		L0PAA1              	100.00%
Bootstrap support for H3BH98 as seed ortholog is 100%.
Bootstrap support for L0PAA1 as seed ortholog is 100%.

Group of orthologs #983. Best score 140 bits
Score difference with first non-orthologous sequence - L.chalumnae:140 P.jiroveci:140

H3BET6              	100.00%		L0PDN8              	100.00%
Bootstrap support for H3BET6 as seed ortholog is 100%.
Bootstrap support for L0PDN8 as seed ortholog is 100%.

Group of orthologs #984. Best score 139 bits
Score difference with first non-orthologous sequence - L.chalumnae:139 P.jiroveci:139

H3A1B2              	100.00%		L0P9B3              	100.00%
Bootstrap support for H3A1B2 as seed ortholog is 100%.
Bootstrap support for L0P9B3 as seed ortholog is 100%.

Group of orthologs #985. Best score 139 bits
Score difference with first non-orthologous sequence - L.chalumnae:139 P.jiroveci:139

H3BFS7              	100.00%		L0PF62              	100.00%
Bootstrap support for H3BFS7 as seed ortholog is 100%.
Bootstrap support for L0PF62 as seed ortholog is 100%.

Group of orthologs #986. Best score 138 bits
Score difference with first non-orthologous sequence - L.chalumnae:138 P.jiroveci:138

H3AJT5              	100.00%		L0PEQ2              	100.00%
H3BHB1              	31.09%		L0P999              	59.79%
M3XJB5              	9.72%		
H3ATL2              	9.12%		
Bootstrap support for H3AJT5 as seed ortholog is 100%.
Bootstrap support for L0PEQ2 as seed ortholog is 100%.

Group of orthologs #987. Best score 138 bits
Score difference with first non-orthologous sequence - L.chalumnae:138 P.jiroveci:138

H3AYT9              	100.00%		L0PEG7              	100.00%
Bootstrap support for H3AYT9 as seed ortholog is 100%.
Bootstrap support for L0PEG7 as seed ortholog is 100%.

Group of orthologs #988. Best score 138 bits
Score difference with first non-orthologous sequence - L.chalumnae:69 P.jiroveci:138

H3B5N4              	100.00%		L0P8I2              	100.00%
Bootstrap support for H3B5N4 as seed ortholog is 98%.
Bootstrap support for L0P8I2 as seed ortholog is 100%.

Group of orthologs #989. Best score 138 bits
Score difference with first non-orthologous sequence - L.chalumnae:138 P.jiroveci:138

H3B9E4              	100.00%		L0PFH1              	100.00%
Bootstrap support for H3B9E4 as seed ortholog is 100%.
Bootstrap support for L0PFH1 as seed ortholog is 100%.

Group of orthologs #990. Best score 137 bits
Score difference with first non-orthologous sequence - L.chalumnae:137 P.jiroveci:137

H3A759              	100.00%		L0P6Q5              	100.00%
H3BGT0              	40.68%		
Bootstrap support for H3A759 as seed ortholog is 100%.
Bootstrap support for L0P6Q5 as seed ortholog is 100%.

Group of orthologs #991. Best score 137 bits
Score difference with first non-orthologous sequence - L.chalumnae:137 P.jiroveci:137

H3AR89              	100.00%		L0P8P0              	100.00%
Bootstrap support for H3AR89 as seed ortholog is 100%.
Bootstrap support for L0P8P0 as seed ortholog is 100%.

Group of orthologs #992. Best score 137 bits
Score difference with first non-orthologous sequence - L.chalumnae:137 P.jiroveci:137

H3BFR7              	100.00%		L0PF37              	100.00%
Bootstrap support for H3BFR7 as seed ortholog is 100%.
Bootstrap support for L0PF37 as seed ortholog is 100%.

Group of orthologs #993. Best score 136 bits
Score difference with first non-orthologous sequence - L.chalumnae:136 P.jiroveci:136

H3ARE2              	100.00%		L0P8K4              	100.00%
H3ABV3              	20.81%		
Bootstrap support for H3ARE2 as seed ortholog is 100%.
Bootstrap support for L0P8K4 as seed ortholog is 100%.

Group of orthologs #994. Best score 136 bits
Score difference with first non-orthologous sequence - L.chalumnae:136 P.jiroveci:136

H2ZX30              	100.00%		L0P8M3              	100.00%
Bootstrap support for H2ZX30 as seed ortholog is 100%.
Bootstrap support for L0P8M3 as seed ortholog is 100%.

Group of orthologs #995. Best score 136 bits
Score difference with first non-orthologous sequence - L.chalumnae:136 P.jiroveci:136

H3AJW8              	100.00%		L0PG78              	100.00%
Bootstrap support for H3AJW8 as seed ortholog is 100%.
Bootstrap support for L0PG78 as seed ortholog is 100%.

Group of orthologs #996. Best score 136 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:136

H3ARW6              	100.00%		L0PAN5              	100.00%
Bootstrap support for H3ARW6 as seed ortholog is 99%.
Bootstrap support for L0PAN5 as seed ortholog is 100%.

Group of orthologs #997. Best score 136 bits
Score difference with first non-orthologous sequence - L.chalumnae:136 P.jiroveci:136

H3BBP1              	100.00%		L0P9L8              	100.00%
Bootstrap support for H3BBP1 as seed ortholog is 100%.
Bootstrap support for L0P9L8 as seed ortholog is 100%.

Group of orthologs #998. Best score 135 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:135

H3APT4              	100.00%		L0P7A1              	100.00%
Bootstrap support for H3APT4 as seed ortholog is 99%.
Bootstrap support for L0P7A1 as seed ortholog is 100%.

Group of orthologs #999. Best score 134 bits
Score difference with first non-orthologous sequence - L.chalumnae:134 P.jiroveci:134

H3AX14              	100.00%		L0P938              	100.00%
M3XLN5              	42.00%		
Bootstrap support for H3AX14 as seed ortholog is 100%.
Bootstrap support for L0P938 as seed ortholog is 100%.

Group of orthologs #1000. Best score 134 bits
Score difference with first non-orthologous sequence - L.chalumnae:134 P.jiroveci:134

H3AE06              	100.00%		L0PC68              	100.00%
Bootstrap support for H3AE06 as seed ortholog is 100%.
Bootstrap support for L0PC68 as seed ortholog is 100%.

Group of orthologs #1001. Best score 134 bits
Score difference with first non-orthologous sequence - L.chalumnae:134 P.jiroveci:134

H3AHH1              	100.00%		L0PAW7              	100.00%
Bootstrap support for H3AHH1 as seed ortholog is 100%.
Bootstrap support for L0PAW7 as seed ortholog is 100%.

Group of orthologs #1002. Best score 134 bits
Score difference with first non-orthologous sequence - L.chalumnae:134 P.jiroveci:134

H3AWZ9              	100.00%		L0PEV6              	100.00%
Bootstrap support for H3AWZ9 as seed ortholog is 100%.
Bootstrap support for L0PEV6 as seed ortholog is 100%.

Group of orthologs #1003. Best score 133 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:76

H3A3G0              	100.00%		L0P8G0              	100.00%
H3B7Y4              	65.70%		
Bootstrap support for H3A3G0 as seed ortholog is 99%.
Bootstrap support for L0P8G0 as seed ortholog is 99%.

Group of orthologs #1004. Best score 133 bits
Score difference with first non-orthologous sequence - L.chalumnae:133 P.jiroveci:133

H3A3X0              	100.00%		L0PEI9              	100.00%
Bootstrap support for H3A3X0 as seed ortholog is 100%.
Bootstrap support for L0PEI9 as seed ortholog is 100%.

Group of orthologs #1005. Best score 133 bits
Score difference with first non-orthologous sequence - L.chalumnae:133 P.jiroveci:133

H3ASQ1              	100.00%		L0P6R0              	100.00%
Bootstrap support for H3ASQ1 as seed ortholog is 100%.
Bootstrap support for L0P6R0 as seed ortholog is 100%.

Group of orthologs #1006. Best score 133 bits
Score difference with first non-orthologous sequence - L.chalumnae:133 P.jiroveci:133

H3B8I2              	100.00%		L0PAY0              	100.00%
Bootstrap support for H3B8I2 as seed ortholog is 100%.
Bootstrap support for L0PAY0 as seed ortholog is 100%.

Group of orthologs #1007. Best score 133 bits
Score difference with first non-orthologous sequence - L.chalumnae:133 P.jiroveci:133

H3BHH6              	100.00%		L0PEV4              	100.00%
Bootstrap support for H3BHH6 as seed ortholog is 100%.
Bootstrap support for L0PEV4 as seed ortholog is 100%.

Group of orthologs #1008. Best score 132 bits
Score difference with first non-orthologous sequence - L.chalumnae:132 P.jiroveci:132

H3B7P4              	100.00%		L0PB30              	100.00%
H3BHG8              	26.18%		
H3AD99              	23.00%		
H2ZWC9              	9.16%		
Bootstrap support for H3B7P4 as seed ortholog is 100%.
Bootstrap support for L0PB30 as seed ortholog is 100%.

Group of orthologs #1009. Best score 132 bits
Score difference with first non-orthologous sequence - L.chalumnae:132 P.jiroveci:132

H3B0N0              	100.00%		L0P940              	100.00%
Bootstrap support for H3B0N0 as seed ortholog is 100%.
Bootstrap support for L0P940 as seed ortholog is 100%.

Group of orthologs #1010. Best score 131 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:131

H3BB22              	100.00%		L0PDT8              	100.00%
                    	       		L0P9R2              	92.53%
Bootstrap support for H3BB22 as seed ortholog is 100%.
Bootstrap support for L0PDT8 as seed ortholog is 100%.

Group of orthologs #1011. Best score 131 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:131

H2ZX33              	100.00%		L0PA07              	100.00%
Bootstrap support for H2ZX33 as seed ortholog is 91%.
Bootstrap support for L0PA07 as seed ortholog is 100%.

Group of orthologs #1012. Best score 131 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:131

H3A449              	100.00%		L0PAZ1              	100.00%
Bootstrap support for H3A449 as seed ortholog is 100%.
Bootstrap support for L0PAZ1 as seed ortholog is 100%.

Group of orthologs #1013. Best score 131 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:131

H3AEW2              	100.00%		L0PG28              	100.00%
Bootstrap support for H3AEW2 as seed ortholog is 100%.
Bootstrap support for L0PG28 as seed ortholog is 100%.

Group of orthologs #1014. Best score 131 bits
Score difference with first non-orthologous sequence - L.chalumnae:131 P.jiroveci:131

H3BB50              	100.00%		L0P8W1              	100.00%
Bootstrap support for H3BB50 as seed ortholog is 100%.
Bootstrap support for L0P8W1 as seed ortholog is 100%.

Group of orthologs #1015. Best score 130 bits
Score difference with first non-orthologous sequence - L.chalumnae:130 P.jiroveci:130

H3A116              	100.00%		L0PAM9              	100.00%
H3BEW6              	100.00%		
Bootstrap support for H3A116 as seed ortholog is 100%.
Bootstrap support for H3BEW6 as seed ortholog is 100%.
Bootstrap support for L0PAM9 as seed ortholog is 100%.

Group of orthologs #1016. Best score 130 bits
Score difference with first non-orthologous sequence - L.chalumnae:130 P.jiroveci:130

H3B591              	100.00%		L0PD60              	100.00%
Bootstrap support for H3B591 as seed ortholog is 100%.
Bootstrap support for L0PD60 as seed ortholog is 100%.

Group of orthologs #1017. Best score 129 bits
Score difference with first non-orthologous sequence - L.chalumnae:85 P.jiroveci:129

H3AEJ9              	100.00%		L0P9W5              	100.00%
Bootstrap support for H3AEJ9 as seed ortholog is 96%.
Bootstrap support for L0P9W5 as seed ortholog is 100%.

Group of orthologs #1018. Best score 129 bits
Score difference with first non-orthologous sequence - L.chalumnae:129 P.jiroveci:129

H3B6J8              	100.00%		L0PG59              	100.00%
Bootstrap support for H3B6J8 as seed ortholog is 100%.
Bootstrap support for L0PG59 as seed ortholog is 100%.

Group of orthologs #1019. Best score 128 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:128

H3AG26              	100.00%		L0PG87              	100.00%
H3A097              	96.89%		
H3BG90              	90.06%		
Bootstrap support for H3AG26 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #1020. Best score 128 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:128

H3B3W6              	100.00%		L0PGC9              	100.00%
H3BHC6              	100.00%		
H3B3B1              	84.49%		
Bootstrap support for H3B3W6 as seed ortholog is 100%.
Bootstrap support for H3BHC6 as seed ortholog is 100%.
Bootstrap support for L0PGC9 as seed ortholog is 100%.

Group of orthologs #1021. Best score 128 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:66

M3XHK2              	100.00%		L0PCC6              	100.00%
H3A224              	38.62%		
H3A7F7              	20.51%		
Bootstrap support for M3XHK2 as seed ortholog is 100%.
Bootstrap support for L0PCC6 as seed ortholog is 98%.

Group of orthologs #1022. Best score 128 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:128

H3AYU6              	100.00%		L0PFZ8              	100.00%
H3AYN3              	5.46%		
Bootstrap support for H3AYU6 as seed ortholog is 100%.
Bootstrap support for L0PFZ8 as seed ortholog is 100%.

Group of orthologs #1023. Best score 128 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:128

H3AB38              	100.00%		L0PF45              	100.00%
Bootstrap support for H3AB38 as seed ortholog is 100%.
Bootstrap support for L0PF45 as seed ortholog is 100%.

Group of orthologs #1024. Best score 128 bits
Score difference with first non-orthologous sequence - L.chalumnae:128 P.jiroveci:128

H3B205              	100.00%		L0P9M3              	100.00%
Bootstrap support for H3B205 as seed ortholog is 100%.
Bootstrap support for L0P9M3 as seed ortholog is 100%.

Group of orthologs #1025. Best score 127 bits
Score difference with first non-orthologous sequence - L.chalumnae:127 P.jiroveci:127

H3A5C3              	100.00%		L0PHQ1              	100.00%
Bootstrap support for H3A5C3 as seed ortholog is 100%.
Bootstrap support for L0PHQ1 as seed ortholog is 100%.

Group of orthologs #1026. Best score 127 bits
Score difference with first non-orthologous sequence - L.chalumnae:127 P.jiroveci:127

H3ALE6              	100.00%		L0PFP4              	100.00%
Bootstrap support for H3ALE6 as seed ortholog is 100%.
Bootstrap support for L0PFP4 as seed ortholog is 100%.

Group of orthologs #1027. Best score 127 bits
Score difference with first non-orthologous sequence - L.chalumnae:127 P.jiroveci:127

H3AVG4              	100.00%		L0PFM7              	100.00%
Bootstrap support for H3AVG4 as seed ortholog is 100%.
Bootstrap support for L0PFM7 as seed ortholog is 100%.

Group of orthologs #1028. Best score 127 bits
Score difference with first non-orthologous sequence - L.chalumnae:127 P.jiroveci:79

H3B6V8              	100.00%		L0PD77              	100.00%
Bootstrap support for H3B6V8 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 99%.

Group of orthologs #1029. Best score 127 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:127

H3BD22              	100.00%		L0PDE3              	100.00%
Bootstrap support for H3BD22 as seed ortholog is 98%.
Bootstrap support for L0PDE3 as seed ortholog is 100%.

Group of orthologs #1030. Best score 127 bits
Score difference with first non-orthologous sequence - L.chalumnae:127 P.jiroveci:127

M3XJ92              	100.00%		L0PFR0              	100.00%
Bootstrap support for M3XJ92 as seed ortholog is 100%.
Bootstrap support for L0PFR0 as seed ortholog is 100%.

Group of orthologs #1031. Best score 126 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:126

H3A7T4              	100.00%		L0PF38              	100.00%
Bootstrap support for H3A7T4 as seed ortholog is 98%.
Bootstrap support for L0PF38 as seed ortholog is 100%.

Group of orthologs #1032. Best score 126 bits
Score difference with first non-orthologous sequence - L.chalumnae:126 P.jiroveci:126

H3B346              	100.00%		L0P9C0              	100.00%
Bootstrap support for H3B346 as seed ortholog is 100%.
Bootstrap support for L0P9C0 as seed ortholog is 100%.

Group of orthologs #1033. Best score 126 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:126

H3B418              	100.00%		L0P9L0              	100.00%
Bootstrap support for H3B418 as seed ortholog is 99%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #1034. Best score 126 bits
Score difference with first non-orthologous sequence - L.chalumnae:126 P.jiroveci:126

H3BG60              	100.00%		L0PC08              	100.00%
Bootstrap support for H3BG60 as seed ortholog is 100%.
Bootstrap support for L0PC08 as seed ortholog is 100%.

Group of orthologs #1035. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:61 P.jiroveci:125

H3AP64              	100.00%		L0PBU1              	100.00%
H3B7K1              	24.37%		
Bootstrap support for H3AP64 as seed ortholog is 99%.
Bootstrap support for L0PBU1 as seed ortholog is 100%.

Group of orthologs #1036. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:125 P.jiroveci:125

H3B3V8              	100.00%		L0PGM7              	100.00%
                    	       		L0PGY6              	94.60%
Bootstrap support for H3B3V8 as seed ortholog is 100%.
Bootstrap support for L0PGM7 as seed ortholog is 100%.

Group of orthologs #1037. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:125 P.jiroveci:125

H3BG52              	100.00%		L0PF05              	100.00%
H3BAU6              	36.91%		
Bootstrap support for H3BG52 as seed ortholog is 100%.
Bootstrap support for L0PF05 as seed ortholog is 100%.

Group of orthologs #1038. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:125 P.jiroveci:125

H2ZTX1              	100.00%		L0PIT4              	100.00%
Bootstrap support for H2ZTX1 as seed ortholog is 100%.
Bootstrap support for L0PIT4 as seed ortholog is 100%.

Group of orthologs #1039. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:125

H3A6Y7              	100.00%		L0PA97              	100.00%
Bootstrap support for H3A6Y7 as seed ortholog is 99%.
Bootstrap support for L0PA97 as seed ortholog is 100%.

Group of orthologs #1040. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:125

H3AZ60              	100.00%		L0PE97              	100.00%
Bootstrap support for H3AZ60 as seed ortholog is 99%.
Bootstrap support for L0PE97 as seed ortholog is 100%.

Group of orthologs #1041. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:125 P.jiroveci:125

H3BC27              	100.00%		L0PBH3              	100.00%
Bootstrap support for H3BC27 as seed ortholog is 100%.
Bootstrap support for L0PBH3 as seed ortholog is 100%.

Group of orthologs #1042. Best score 125 bits
Score difference with first non-orthologous sequence - L.chalumnae:125 P.jiroveci:125

H3B9L3              	100.00%		L0PF16              	100.00%
Bootstrap support for H3B9L3 as seed ortholog is 100%.
Bootstrap support for L0PF16 as seed ortholog is 100%.

Group of orthologs #1043. Best score 124 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:124

H3AL49              	100.00%		L0P9S9              	100.00%
H3A818              	49.84%		L0PDT3              	44.22%
H3B1W9              	27.41%		
H2ZUI9              	25.55%		
Bootstrap support for H3AL49 as seed ortholog is 78%.
Bootstrap support for L0P9S9 as seed ortholog is 100%.

Group of orthologs #1044. Best score 124 bits
Score difference with first non-orthologous sequence - L.chalumnae:124 P.jiroveci:124

H3A4E1              	100.00%		L0PEP9              	100.00%
M3XGN6              	53.77%		
Bootstrap support for H3A4E1 as seed ortholog is 100%.
Bootstrap support for L0PEP9 as seed ortholog is 100%.

Group of orthologs #1045. Best score 124 bits
Score difference with first non-orthologous sequence - L.chalumnae:124 P.jiroveci:124

H3ABM9              	100.00%		L0PCZ0              	100.00%
Bootstrap support for H3ABM9 as seed ortholog is 100%.
Bootstrap support for L0PCZ0 as seed ortholog is 100%.

Group of orthologs #1046. Best score 124 bits
Score difference with first non-orthologous sequence - L.chalumnae:124 P.jiroveci:124

H3B5X2              	100.00%		L0PHD0              	100.00%
Bootstrap support for H3B5X2 as seed ortholog is 100%.
Bootstrap support for L0PHD0 as seed ortholog is 100%.

Group of orthologs #1047. Best score 123 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:123

H3ACA2              	100.00%		L0PD09              	100.00%
H3AZL0              	34.87%		
M3XGH9              	22.97%		
M3XH33              	21.99%		
H3ABY4              	20.59%		
H3ASF4              	19.89%		
H3ATQ8              	19.19%		
H3BAC9              	19.19%		
H3AT45              	17.65%		
H3BBN2              	16.95%		
H3AE86              	15.97%		
H2ZXI5              	15.69%		
H3B110              	15.55%		
M3XGT4              	13.73%		
H3ABV4              	12.46%		
H3AE46              	10.78%		
H2ZU91              	9.24%		
Bootstrap support for H3ACA2 as seed ortholog is 94%.
Bootstrap support for L0PD09 as seed ortholog is 100%.

Group of orthologs #1048. Best score 123 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:123

H3B057              	100.00%		L0P9Q7              	100.00%
                    	       		L0PD70              	100.00%
                    	       		L0PC29              	44.16%
Bootstrap support for H3B057 as seed ortholog is 97%.
Bootstrap support for L0P9Q7 as seed ortholog is 100%.
Bootstrap support for L0PD70 as seed ortholog is 100%.

Group of orthologs #1049. Best score 123 bits
Score difference with first non-orthologous sequence - L.chalumnae:123 P.jiroveci:123

H3A9W2              	100.00%		L0PFD1              	100.00%
Bootstrap support for H3A9W2 as seed ortholog is 100%.
Bootstrap support for L0PFD1 as seed ortholog is 100%.

Group of orthologs #1050. Best score 123 bits
Score difference with first non-orthologous sequence - L.chalumnae:30 P.jiroveci:59

H3AGI5              	100.00%		L0PGL7              	100.00%
Bootstrap support for H3AGI5 as seed ortholog is 87%.
Bootstrap support for L0PGL7 as seed ortholog is 96%.

Group of orthologs #1051. Best score 123 bits
Score difference with first non-orthologous sequence - L.chalumnae:123 P.jiroveci:123

H3AVF5              	100.00%		L0PFV4              	100.00%
Bootstrap support for H3AVF5 as seed ortholog is 100%.
Bootstrap support for L0PFV4 as seed ortholog is 100%.

Group of orthologs #1052. Best score 122 bits
Score difference with first non-orthologous sequence - L.chalumnae:11 P.jiroveci:122

H3AB04              	100.00%		L0P913              	100.00%
H2ZZA5              	36.08%		
Bootstrap support for H3AB04 as seed ortholog is 60%.
Alternative seed ortholog is H3AWP3 (11 bits away from this cluster)
Bootstrap support for L0P913 as seed ortholog is 100%.

Group of orthologs #1053. Best score 122 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:122

H3AV41              	100.00%		L0PEZ7              	100.00%
H3A7I8              	41.51%		
Bootstrap support for H3AV41 as seed ortholog is 100%.
Bootstrap support for L0PEZ7 as seed ortholog is 100%.

Group of orthologs #1054. Best score 122 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:122

H3BBA9              	100.00%		L0PCA3              	100.00%
H3AKB4              	16.29%		
Bootstrap support for H3BBA9 as seed ortholog is 100%.
Bootstrap support for L0PCA3 as seed ortholog is 100%.

Group of orthologs #1055. Best score 122 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:122

H3BC05              	100.00%		L0P816              	100.00%
Bootstrap support for H3BC05 as seed ortholog is 100%.
Bootstrap support for L0P816 as seed ortholog is 100%.

Group of orthologs #1056. Best score 122 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:122

H3B8U8              	100.00%		L0PCB4              	100.00%
Bootstrap support for H3B8U8 as seed ortholog is 100%.
Bootstrap support for L0PCB4 as seed ortholog is 100%.

Group of orthologs #1057. Best score 122 bits
Score difference with first non-orthologous sequence - L.chalumnae:122 P.jiroveci:122

H3B9K8              	100.00%		L0PDZ4              	100.00%
Bootstrap support for H3B9K8 as seed ortholog is 100%.
Bootstrap support for L0PDZ4 as seed ortholog is 100%.

Group of orthologs #1058. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:15 P.jiroveci:121

H3A2W4              	100.00%		L0PE21              	100.00%
H3B4R1              	32.78%		
H3B4T9              	31.75%		
Bootstrap support for H3A2W4 as seed ortholog is 67%.
Alternative seed ortholog is H3BHD0 (15 bits away from this cluster)
Bootstrap support for L0PE21 as seed ortholog is 100%.

Group of orthologs #1059. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:8 P.jiroveci:121

H3B7B8              	100.00%		L0PG76              	100.00%
                    	       		L0PE70              	58.67%
Bootstrap support for H3B7B8 as seed ortholog is 61%.
Alternative seed ortholog is H2ZWD9 (8 bits away from this cluster)
Bootstrap support for L0PG76 as seed ortholog is 100%.

Group of orthologs #1060. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:121 P.jiroveci:121

H3BCF9              	100.00%		L0PD00              	100.00%
H3AS61              	8.23%		
Bootstrap support for H3BCF9 as seed ortholog is 100%.
Bootstrap support for L0PD00 as seed ortholog is 100%.

Group of orthologs #1061. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:121 P.jiroveci:121

H2ZXG7              	100.00%		L0P9E5              	100.00%
Bootstrap support for H2ZXG7 as seed ortholog is 100%.
Bootstrap support for L0P9E5 as seed ortholog is 100%.

Group of orthologs #1062. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:121 P.jiroveci:121

H3A0K1              	100.00%		L0PDX2              	100.00%
Bootstrap support for H3A0K1 as seed ortholog is 100%.
Bootstrap support for L0PDX2 as seed ortholog is 100%.

Group of orthologs #1063. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:35 P.jiroveci:121

H2ZZK8              	100.00%		L0PGC0              	100.00%
Bootstrap support for H2ZZK8 as seed ortholog is 87%.
Bootstrap support for L0PGC0 as seed ortholog is 100%.

Group of orthologs #1064. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:121 P.jiroveci:121

H3AZ11              	100.00%		L0PD37              	100.00%
Bootstrap support for H3AZ11 as seed ortholog is 100%.
Bootstrap support for L0PD37 as seed ortholog is 100%.

Group of orthologs #1065. Best score 121 bits
Score difference with first non-orthologous sequence - L.chalumnae:75 P.jiroveci:121

H3B5C4              	100.00%		L0P9A1              	100.00%
Bootstrap support for H3B5C4 as seed ortholog is 99%.
Bootstrap support for L0P9A1 as seed ortholog is 100%.

Group of orthologs #1066. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:120 P.jiroveci:120

H2ZSG7              	100.00%		L0P7K4              	100.00%
                    	       		L0P859              	81.97%
Bootstrap support for H2ZSG7 as seed ortholog is 100%.
Bootstrap support for L0P7K4 as seed ortholog is 100%.

Group of orthologs #1067. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:34 P.jiroveci:120

H2ZSY8              	100.00%		L0PA43              	100.00%
H3AAA2              	42.33%		
Bootstrap support for H2ZSY8 as seed ortholog is 79%.
Bootstrap support for L0PA43 as seed ortholog is 100%.

Group of orthologs #1068. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:16 P.jiroveci:120

H3A101              	100.00%		L0PBW0              	100.00%
H3A3M4              	29.19%		
Bootstrap support for H3A101 as seed ortholog is 65%.
Alternative seed ortholog is H3AAM1 (16 bits away from this cluster)
Bootstrap support for L0PBW0 as seed ortholog is 100%.

Group of orthologs #1069. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:35 P.jiroveci:120

H3BDP2              	100.00%		L0PD24              	100.00%
H3A4X6              	61.27%		
Bootstrap support for H3BDP2 as seed ortholog is 80%.
Bootstrap support for L0PD24 as seed ortholog is 100%.

Group of orthologs #1070. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:120 P.jiroveci:120

H2ZUS9              	100.00%		L0PFP3              	100.00%
Bootstrap support for H2ZUS9 as seed ortholog is 100%.
Bootstrap support for L0PFP3 as seed ortholog is 100%.

Group of orthologs #1071. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:120 P.jiroveci:120

H3A086              	100.00%		L0PCN2              	100.00%
Bootstrap support for H3A086 as seed ortholog is 100%.
Bootstrap support for L0PCN2 as seed ortholog is 100%.

Group of orthologs #1072. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:120 P.jiroveci:120

H3ADZ8              	100.00%		L0PDE5              	100.00%
Bootstrap support for H3ADZ8 as seed ortholog is 100%.
Bootstrap support for L0PDE5 as seed ortholog is 100%.

Group of orthologs #1073. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:120 P.jiroveci:120

H3BA70              	100.00%		L0PAT4              	100.00%
Bootstrap support for H3BA70 as seed ortholog is 100%.
Bootstrap support for L0PAT4 as seed ortholog is 100%.

Group of orthologs #1074. Best score 120 bits
Score difference with first non-orthologous sequence - L.chalumnae:120 P.jiroveci:120

H3BCV8              	100.00%		L0PGS9              	100.00%
Bootstrap support for H3BCV8 as seed ortholog is 100%.
Bootstrap support for L0PGS9 as seed ortholog is 100%.

Group of orthologs #1075. Best score 119 bits
Score difference with first non-orthologous sequence - L.chalumnae:119 P.jiroveci:119

H3A8N3              	100.00%		L0P990              	100.00%
H3A6G0              	63.47%		
H3AHT6              	60.06%		
Bootstrap support for H3A8N3 as seed ortholog is 100%.
Bootstrap support for L0P990 as seed ortholog is 100%.

Group of orthologs #1076. Best score 119 bits
Score difference with first non-orthologous sequence - L.chalumnae:119 P.jiroveci:119

H2ZZ94              	100.00%		L0P8G3              	100.00%
H3BI83              	100.00%		
Bootstrap support for H2ZZ94 as seed ortholog is 100%.
Bootstrap support for H3BI83 as seed ortholog is 100%.
Bootstrap support for L0P8G3 as seed ortholog is 100%.

Group of orthologs #1077. Best score 119 bits
Score difference with first non-orthologous sequence - L.chalumnae:119 P.jiroveci:119

H2ZRM7              	100.00%		L0PCC0              	100.00%
Bootstrap support for H2ZRM7 as seed ortholog is 100%.
Bootstrap support for L0PCC0 as seed ortholog is 100%.

Group of orthologs #1078. Best score 119 bits
Score difference with first non-orthologous sequence - L.chalumnae:119 P.jiroveci:119

H3B149              	100.00%		L0PFD0              	100.00%
Bootstrap support for H3B149 as seed ortholog is 100%.
Bootstrap support for L0PFD0 as seed ortholog is 100%.

Group of orthologs #1079. Best score 119 bits
Score difference with first non-orthologous sequence - L.chalumnae:119 P.jiroveci:119

H3B636              	100.00%		L0PFZ3              	100.00%
Bootstrap support for H3B636 as seed ortholog is 100%.
Bootstrap support for L0PFZ3 as seed ortholog is 100%.

Group of orthologs #1080. Best score 118 bits
Score difference with first non-orthologous sequence - L.chalumnae:118 P.jiroveci:118

H3B637              	100.00%		L0PE18              	100.00%
H3A410              	18.38%		
H3A9I2              	16.05%		
H3AMU1              	15.09%		
H3AQY1              	14.89%		
H3A409              	8.70%		
Bootstrap support for H3B637 as seed ortholog is 100%.
Bootstrap support for L0PE18 as seed ortholog is 100%.

Group of orthologs #1081. Best score 118 bits
Score difference with first non-orthologous sequence - L.chalumnae:12 P.jiroveci:118

H3A7E8              	100.00%		L0P9W8              	100.00%
H3A8H2              	75.00%		L0PH99              	63.19%
M3XHE1              	12.45%		
H2ZZY5              	7.72%		
Bootstrap support for H3A7E8 as seed ortholog is 63%.
Alternative seed ortholog is H3AA40 (12 bits away from this cluster)
Bootstrap support for L0P9W8 as seed ortholog is 100%.

Group of orthologs #1082. Best score 118 bits
Score difference with first non-orthologous sequence - L.chalumnae:118 P.jiroveci:118

H2ZY65              	100.00%		L0PFX5              	100.00%
Bootstrap support for H2ZY65 as seed ortholog is 100%.
Bootstrap support for L0PFX5 as seed ortholog is 100%.

Group of orthologs #1083. Best score 118 bits
Score difference with first non-orthologous sequence - L.chalumnae:118 P.jiroveci:118

H3BBQ7              	100.00%		L0PCP2              	100.00%
Bootstrap support for H3BBQ7 as seed ortholog is 100%.
Bootstrap support for L0PCP2 as seed ortholog is 100%.

Group of orthologs #1084. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3AE10              	100.00%		L0P6Z5              	100.00%
H3AB23              	16.09%		
Bootstrap support for H3AE10 as seed ortholog is 100%.
Bootstrap support for L0P6Z5 as seed ortholog is 100%.

Group of orthologs #1085. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3AF24              	100.00%		L0PGF6              	100.00%
H3AA18              	50.29%		
Bootstrap support for H3AF24 as seed ortholog is 100%.
Bootstrap support for L0PGF6 as seed ortholog is 100%.

Group of orthologs #1086. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3B4I6              	100.00%		L0PDZ3              	100.00%
H3BDF3              	22.59%		
Bootstrap support for H3B4I6 as seed ortholog is 100%.
Bootstrap support for L0PDZ3 as seed ortholog is 100%.

Group of orthologs #1087. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3B8P1              	100.00%		L0PG04              	100.00%
M3XI03              	52.61%		
Bootstrap support for H3B8P1 as seed ortholog is 100%.
Bootstrap support for L0PG04 as seed ortholog is 100%.

Group of orthologs #1088. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3A2M2              	100.00%		L0PHM1              	100.00%
Bootstrap support for H3A2M2 as seed ortholog is 100%.
Bootstrap support for L0PHM1 as seed ortholog is 100%.

Group of orthologs #1089. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3BCK7              	100.00%		L0P6Z8              	100.00%
Bootstrap support for H3BCK7 as seed ortholog is 100%.
Bootstrap support for L0P6Z8 as seed ortholog is 100%.

Group of orthologs #1090. Best score 117 bits
Score difference with first non-orthologous sequence - L.chalumnae:117 P.jiroveci:117

H3B4S8              	100.00%		L0PFI7              	100.00%
Bootstrap support for H3B4S8 as seed ortholog is 100%.
Bootstrap support for L0PFI7 as seed ortholog is 100%.

Group of orthologs #1091. Best score 116 bits
Score difference with first non-orthologous sequence - L.chalumnae:116 P.jiroveci:116

H3AVF2              	100.00%		L0P911              	100.00%
H3AV94              	35.74%		
Bootstrap support for H3AVF2 as seed ortholog is 100%.
Bootstrap support for L0P911 as seed ortholog is 100%.

Group of orthologs #1092. Best score 115 bits
Score difference with first non-orthologous sequence - L.chalumnae:115 P.jiroveci:115

H3AB03              	100.00%		L0PBR1              	100.00%
Bootstrap support for H3AB03 as seed ortholog is 100%.
Bootstrap support for L0PBR1 as seed ortholog is 100%.

Group of orthologs #1093. Best score 115 bits
Score difference with first non-orthologous sequence - L.chalumnae:115 P.jiroveci:115

H3AS06              	100.00%		L0PB27              	100.00%
Bootstrap support for H3AS06 as seed ortholog is 100%.
Bootstrap support for L0PB27 as seed ortholog is 100%.

Group of orthologs #1094. Best score 114 bits
Score difference with first non-orthologous sequence - L.chalumnae:114 P.jiroveci:114

H2ZZL5              	100.00%		L0PFD5              	100.00%
Bootstrap support for H2ZZL5 as seed ortholog is 100%.
Bootstrap support for L0PFD5 as seed ortholog is 100%.

Group of orthologs #1095. Best score 114 bits
Score difference with first non-orthologous sequence - L.chalumnae:114 P.jiroveci:114

H3ATB1              	100.00%		L0PA59              	100.00%
Bootstrap support for H3ATB1 as seed ortholog is 100%.
Bootstrap support for L0PA59 as seed ortholog is 100%.

Group of orthologs #1096. Best score 113 bits
Score difference with first non-orthologous sequence - L.chalumnae:42 P.jiroveci:113

H3B270              	100.00%		L0P982              	100.00%
H2ZXJ7              	53.33%		
H3BEA6              	43.70%		
H3A5P5              	37.59%		
H3AXM0              	31.48%		
H2ZSJ0              	22.22%		
Bootstrap support for H3B270 as seed ortholog is 83%.
Bootstrap support for L0P982 as seed ortholog is 100%.

Group of orthologs #1097. Best score 113 bits
Score difference with first non-orthologous sequence - L.chalumnae:113 P.jiroveci:113

H2ZSW5              	100.00%		L0P8L2              	100.00%
Bootstrap support for H2ZSW5 as seed ortholog is 100%.
Bootstrap support for L0P8L2 as seed ortholog is 100%.

Group of orthologs #1098. Best score 113 bits
Score difference with first non-orthologous sequence - L.chalumnae:113 P.jiroveci:113

H3BDL8              	100.00%		L0PBK0              	100.00%
Bootstrap support for H3BDL8 as seed ortholog is 100%.
Bootstrap support for L0PBK0 as seed ortholog is 100%.

Group of orthologs #1099. Best score 113 bits
Score difference with first non-orthologous sequence - L.chalumnae:43 P.jiroveci:113

M3XK98              	100.00%		L0PCT4              	100.00%
Bootstrap support for M3XK98 as seed ortholog is 91%.
Bootstrap support for L0PCT4 as seed ortholog is 100%.

Group of orthologs #1100. Best score 112 bits
Score difference with first non-orthologous sequence - L.chalumnae:10 P.jiroveci:112

H3A473              	100.00%		L0P984              	100.00%
Bootstrap support for H3A473 as seed ortholog is 62%.
Alternative seed ortholog is H3ASW8 (10 bits away from this cluster)
Bootstrap support for L0P984 as seed ortholog is 100%.

Group of orthologs #1101. Best score 112 bits
Score difference with first non-orthologous sequence - L.chalumnae:112 P.jiroveci:112

H3A3M1              	100.00%		L0PGF4              	100.00%
Bootstrap support for H3A3M1 as seed ortholog is 100%.
Bootstrap support for L0PGF4 as seed ortholog is 100%.

Group of orthologs #1102. Best score 112 bits
Score difference with first non-orthologous sequence - L.chalumnae:28 P.jiroveci:112

H3A8K9              	100.00%		L0PD86              	100.00%
Bootstrap support for H3A8K9 as seed ortholog is 92%.
Bootstrap support for L0PD86 as seed ortholog is 100%.

Group of orthologs #1103. Best score 112 bits
Score difference with first non-orthologous sequence - L.chalumnae:112 P.jiroveci:112

H3AMB3              	100.00%		L0PFK4              	100.00%
Bootstrap support for H3AMB3 as seed ortholog is 100%.
Bootstrap support for L0PFK4 as seed ortholog is 100%.

Group of orthologs #1104. Best score 111 bits
Score difference with first non-orthologous sequence - L.chalumnae:111 P.jiroveci:111

H3B5E5              	100.00%		L0PE76              	100.00%
H2ZSM3              	23.44%		
Bootstrap support for H3B5E5 as seed ortholog is 100%.
Bootstrap support for L0PE76 as seed ortholog is 100%.

Group of orthologs #1105. Best score 111 bits
Score difference with first non-orthologous sequence - L.chalumnae:111 P.jiroveci:111

H3BA89              	100.00%		L0PGB6              	100.00%
                    	       		L0PG66              	85.41%
Bootstrap support for H3BA89 as seed ortholog is 100%.
Bootstrap support for L0PGB6 as seed ortholog is 100%.

Group of orthologs #1106. Best score 111 bits
Score difference with first non-orthologous sequence - L.chalumnae:111 P.jiroveci:111

H3A7W2              	100.00%		L0P997              	100.00%
Bootstrap support for H3A7W2 as seed ortholog is 100%.
Bootstrap support for L0P997 as seed ortholog is 100%.

Group of orthologs #1107. Best score 111 bits
Score difference with first non-orthologous sequence - L.chalumnae:111 P.jiroveci:111

H3AGW2              	100.00%		L0PAM7              	100.00%
Bootstrap support for H3AGW2 as seed ortholog is 100%.
Bootstrap support for L0PAM7 as seed ortholog is 100%.

Group of orthologs #1108. Best score 111 bits
Score difference with first non-orthologous sequence - L.chalumnae:111 P.jiroveci:111

H3B7F4              	100.00%		L0PD19              	100.00%
Bootstrap support for H3B7F4 as seed ortholog is 100%.
Bootstrap support for L0PD19 as seed ortholog is 100%.

Group of orthologs #1109. Best score 111 bits
Score difference with first non-orthologous sequence - L.chalumnae:111 P.jiroveci:111

H3B9D1              	100.00%		L0PCM5              	100.00%
Bootstrap support for H3B9D1 as seed ortholog is 100%.
Bootstrap support for L0PCM5 as seed ortholog is 100%.

Group of orthologs #1110. Best score 110 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:110

H3B923              	100.00%		L0P8T2              	100.00%
                    	       		L0PA19              	81.31%
Bootstrap support for H3B923 as seed ortholog is 100%.
Bootstrap support for L0P8T2 as seed ortholog is 100%.

Group of orthologs #1111. Best score 110 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:110

H3B9P1              	100.00%		L0PCZ2              	100.00%
H3BG33              	48.20%		
Bootstrap support for H3B9P1 as seed ortholog is 100%.
Bootstrap support for L0PCZ2 as seed ortholog is 100%.

Group of orthologs #1112. Best score 110 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:110

H3A3S5              	100.00%		L0PAK9              	100.00%
Bootstrap support for H3A3S5 as seed ortholog is 100%.
Bootstrap support for L0PAK9 as seed ortholog is 100%.

Group of orthologs #1113. Best score 110 bits
Score difference with first non-orthologous sequence - L.chalumnae:110 P.jiroveci:110

H3A959              	100.00%		L0PCY1              	100.00%
Bootstrap support for H3A959 as seed ortholog is 100%.
Bootstrap support for L0PCY1 as seed ortholog is 100%.

Group of orthologs #1114. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H3A0T0              	100.00%		L0PFG4              	100.00%
                    	       		L0P939              	37.26%
Bootstrap support for H3A0T0 as seed ortholog is 100%.
Bootstrap support for L0PFG4 as seed ortholog is 100%.

Group of orthologs #1115. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:109

H3B3N2              	100.00%		L0P8J9              	100.00%
H3AQ43              	32.00%		
Bootstrap support for H3B3N2 as seed ortholog is 93%.
Bootstrap support for L0P8J9 as seed ortholog is 100%.

Group of orthologs #1116. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

M3XGL7              	100.00%		L0P7D7              	100.00%
H3A622              	59.02%		
Bootstrap support for M3XGL7 as seed ortholog is 100%.
Bootstrap support for L0P7D7 as seed ortholog is 100%.

Group of orthologs #1117. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H2ZSJ7              	100.00%		L0PD92              	100.00%
Bootstrap support for H2ZSJ7 as seed ortholog is 100%.
Bootstrap support for L0PD92 as seed ortholog is 100%.

Group of orthologs #1118. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H3A8K4              	100.00%		L0PCX7              	100.00%
Bootstrap support for H3A8K4 as seed ortholog is 100%.
Bootstrap support for L0PCX7 as seed ortholog is 100%.

Group of orthologs #1119. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H3ADG6              	100.00%		L0PE14              	100.00%
Bootstrap support for H3ADG6 as seed ortholog is 100%.
Bootstrap support for L0PE14 as seed ortholog is 100%.

Group of orthologs #1120. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:61 P.jiroveci:109

H3ATJ1              	100.00%		L0PEE1              	100.00%
Bootstrap support for H3ATJ1 as seed ortholog is 99%.
Bootstrap support for L0PEE1 as seed ortholog is 100%.

Group of orthologs #1121. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H3ATH5              	100.00%		L0PF00              	100.00%
Bootstrap support for H3ATH5 as seed ortholog is 100%.
Bootstrap support for L0PF00 as seed ortholog is 100%.

Group of orthologs #1122. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:7 P.jiroveci:109

H3B037              	100.00%		L0PF58              	100.00%
Bootstrap support for H3B037 as seed ortholog is 61%.
Alternative seed ortholog is H3APW6 (7 bits away from this cluster)
Bootstrap support for L0PF58 as seed ortholog is 100%.

Group of orthologs #1123. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H3B9G9              	100.00%		L0PCC2              	100.00%
Bootstrap support for H3B9G9 as seed ortholog is 100%.
Bootstrap support for L0PCC2 as seed ortholog is 100%.

Group of orthologs #1124. Best score 109 bits
Score difference with first non-orthologous sequence - L.chalumnae:109 P.jiroveci:109

H3BD85              	100.00%		L0PIQ9              	100.00%
Bootstrap support for H3BD85 as seed ortholog is 100%.
Bootstrap support for L0PIQ9 as seed ortholog is 100%.

Group of orthologs #1125. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3AYB0              	100.00%		L0PC23              	100.00%
H3B8A2              	31.17%		
H3B7I7              	14.00%		
H3B8B8              	6.06%		
Bootstrap support for H3AYB0 as seed ortholog is 100%.
Bootstrap support for L0PC23 as seed ortholog is 100%.

Group of orthologs #1126. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3B985              	100.00%		L0P8D7              	100.00%
H3B3H5              	52.22%		
Bootstrap support for H3B985 as seed ortholog is 100%.
Bootstrap support for L0P8D7 as seed ortholog is 100%.

Group of orthologs #1127. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3BFN3              	100.00%		L0PD85              	100.00%
                    	       		L0PGV7              	61.65%
Bootstrap support for H3BFN3 as seed ortholog is 100%.
Bootstrap support for L0PD85 as seed ortholog is 100%.

Group of orthologs #1128. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H2ZUI6              	100.00%		L0PGR9              	100.00%
Bootstrap support for H2ZUI6 as seed ortholog is 100%.
Bootstrap support for L0PGR9 as seed ortholog is 100%.

Group of orthologs #1129. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3A8M9              	100.00%		L0PDI3              	100.00%
Bootstrap support for H3A8M9 as seed ortholog is 100%.
Bootstrap support for L0PDI3 as seed ortholog is 100%.

Group of orthologs #1130. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3AK60              	100.00%		L0PEZ8              	100.00%
Bootstrap support for H3AK60 as seed ortholog is 100%.
Bootstrap support for L0PEZ8 as seed ortholog is 100%.

Group of orthologs #1131. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3AUA2              	100.00%		L0PAB8              	100.00%
Bootstrap support for H3AUA2 as seed ortholog is 100%.
Bootstrap support for L0PAB8 as seed ortholog is 100%.

Group of orthologs #1132. Best score 108 bits
Score difference with first non-orthologous sequence - L.chalumnae:108 P.jiroveci:108

H3AVV5              	100.00%		L0PA35              	100.00%
Bootstrap support for H3AVV5 as seed ortholog is 100%.
Bootstrap support for L0PA35 as seed ortholog is 100%.

Group of orthologs #1133. Best score 107 bits
Score difference with first non-orthologous sequence - L.chalumnae:43 P.jiroveci:32

H3AR32              	100.00%		L0PBE1              	100.00%
H3B7T7              	100.00%		
H3A5V7              	37.30%		
H3AZT5              	30.92%		
H3BF30              	28.28%		
H3B6A5              	23.77%		
H2ZX82              	20.90%		
Bootstrap support for H3AR32 as seed ortholog is 99%.
Bootstrap support for H3B7T7 as seed ortholog is 98%.
Bootstrap support for L0PBE1 as seed ortholog is 93%.

Group of orthologs #1134. Best score 107 bits
Score difference with first non-orthologous sequence - L.chalumnae:107 P.jiroveci:107

H2ZVS1              	100.00%		L0PAF2              	100.00%
H3AW52              	14.71%		
Bootstrap support for H2ZVS1 as seed ortholog is 100%.
Bootstrap support for L0PAF2 as seed ortholog is 100%.

Group of orthologs #1135. Best score 107 bits
Score difference with first non-orthologous sequence - L.chalumnae:107 P.jiroveci:107

H3A6H4              	100.00%		L0P7Q2              	100.00%
H3A5R7              	57.75%		
Bootstrap support for H3A6H4 as seed ortholog is 100%.
Bootstrap support for L0P7Q2 as seed ortholog is 100%.

Group of orthologs #1136. Best score 107 bits
Score difference with first non-orthologous sequence - L.chalumnae:107 P.jiroveci:107

H2ZXC2              	100.00%		L0P996              	100.00%
Bootstrap support for H2ZXC2 as seed ortholog is 100%.
Bootstrap support for L0P996 as seed ortholog is 100%.

Group of orthologs #1137. Best score 107 bits
Score difference with first non-orthologous sequence - L.chalumnae:107 P.jiroveci:107

H2ZXJ0              	100.00%		L0PHI8              	100.00%
Bootstrap support for H2ZXJ0 as seed ortholog is 100%.
Bootstrap support for L0PHI8 as seed ortholog is 100%.

Group of orthologs #1138. Best score 106 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:106

H3B438              	100.00%		L0PHJ8              	100.00%
                    	       		L0P888              	59.83%
Bootstrap support for H3B438 as seed ortholog is 100%.
Bootstrap support for L0PHJ8 as seed ortholog is 100%.

Group of orthologs #1139. Best score 106 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:106

H3A2N8              	100.00%		L0PAS5              	100.00%
Bootstrap support for H3A2N8 as seed ortholog is 100%.
Bootstrap support for L0PAS5 as seed ortholog is 100%.

Group of orthologs #1140. Best score 106 bits
Score difference with first non-orthologous sequence - L.chalumnae:52 P.jiroveci:106

H2ZXI0              	100.00%		L0PG46              	100.00%
Bootstrap support for H2ZXI0 as seed ortholog is 99%.
Bootstrap support for L0PG46 as seed ortholog is 100%.

Group of orthologs #1141. Best score 106 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:106

H3A792              	100.00%		L0PCV9              	100.00%
Bootstrap support for H3A792 as seed ortholog is 100%.
Bootstrap support for L0PCV9 as seed ortholog is 100%.

Group of orthologs #1142. Best score 106 bits
Score difference with first non-orthologous sequence - L.chalumnae:106 P.jiroveci:106

H3ARG0              	100.00%		L0PCT2              	100.00%
Bootstrap support for H3ARG0 as seed ortholog is 100%.
Bootstrap support for L0PCT2 as seed ortholog is 100%.

Group of orthologs #1143. Best score 105 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:105

H3BHF8              	100.00%		L0P7Q1              	100.00%
H3AGL2              	44.83%		
H3A5F3              	7.66%		
Bootstrap support for H3BHF8 as seed ortholog is 100%.
Bootstrap support for L0P7Q1 as seed ortholog is 100%.

Group of orthologs #1144. Best score 105 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:105

M3XII1              	100.00%		L0PFV9              	100.00%
H3AX58              	30.69%		
Bootstrap support for M3XII1 as seed ortholog is 100%.
Bootstrap support for L0PFV9 as seed ortholog is 100%.

Group of orthologs #1145. Best score 105 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:105

H3AJB1              	100.00%		L0PE35              	100.00%
Bootstrap support for H3AJB1 as seed ortholog is 100%.
Bootstrap support for L0PE35 as seed ortholog is 100%.

Group of orthologs #1146. Best score 105 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:105

H3B243              	100.00%		L0PCT7              	100.00%
Bootstrap support for H3B243 as seed ortholog is 100%.
Bootstrap support for L0PCT7 as seed ortholog is 100%.

Group of orthologs #1147. Best score 105 bits
Score difference with first non-orthologous sequence - L.chalumnae:105 P.jiroveci:105

H3B312              	100.00%		L0PFV2              	100.00%
Bootstrap support for H3B312 as seed ortholog is 100%.
Bootstrap support for L0PFV2 as seed ortholog is 100%.

Group of orthologs #1148. Best score 105 bits
Score difference with first non-orthologous sequence - L.chalumnae:31 P.jiroveci:105

M3XKY6              	100.00%		L0PGL1              	100.00%
Bootstrap support for M3XKY6 as seed ortholog is 78%.
Bootstrap support for L0PGL1 as seed ortholog is 100%.

Group of orthologs #1149. Best score 104 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:104

H3AJ72              	100.00%		L0PAT7              	100.00%
H3AHG6              	65.82%		
H3B571              	35.85%		
M3XHJ4              	5.10%		
Bootstrap support for H3AJ72 as seed ortholog is 100%.
Bootstrap support for L0PAT7 as seed ortholog is 100%.

Group of orthologs #1150. Best score 104 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:104

H3ATM4              	100.00%		L0P6Z0              	100.00%
H3ASV4              	34.11%		
H2ZSU0              	20.07%		
Bootstrap support for H3ATM4 as seed ortholog is 100%.
Bootstrap support for L0P6Z0 as seed ortholog is 100%.

Group of orthologs #1151. Best score 104 bits
Score difference with first non-orthologous sequence - L.chalumnae:20 P.jiroveci:104

H3ART8              	100.00%		L0PBU9              	100.00%
M3XKI1              	11.46%		
Bootstrap support for H3ART8 as seed ortholog is 88%.
Bootstrap support for L0PBU9 as seed ortholog is 100%.

Group of orthologs #1152. Best score 104 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:104

H2ZTX4              	100.00%		L0PCK2              	100.00%
Bootstrap support for H2ZTX4 as seed ortholog is 100%.
Bootstrap support for L0PCK2 as seed ortholog is 100%.

Group of orthologs #1153. Best score 104 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:104

H3AMM8              	100.00%		L0P9R5              	100.00%
Bootstrap support for H3AMM8 as seed ortholog is 100%.
Bootstrap support for L0P9R5 as seed ortholog is 100%.

Group of orthologs #1154. Best score 104 bits
Score difference with first non-orthologous sequence - L.chalumnae:104 P.jiroveci:104

H3B3A9              	100.00%		L0PB99              	100.00%
Bootstrap support for H3B3A9 as seed ortholog is 100%.
Bootstrap support for L0PB99 as seed ortholog is 100%.

Group of orthologs #1155. Best score 103 bits
Score difference with first non-orthologous sequence - L.chalumnae:103 P.jiroveci:103

H2ZY23              	100.00%		L0P9W7              	100.00%
M3XI97              	5.45%		
Bootstrap support for H2ZY23 as seed ortholog is 100%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #1156. Best score 103 bits
Score difference with first non-orthologous sequence - L.chalumnae:103 P.jiroveci:103

H3AEH4              	100.00%		L0P7G9              	100.00%
H2ZWF4              	79.33%		
Bootstrap support for H3AEH4 as seed ortholog is 100%.
Bootstrap support for L0P7G9 as seed ortholog is 100%.

Group of orthologs #1157. Best score 103 bits
Score difference with first non-orthologous sequence - L.chalumnae:54 P.jiroveci:103

H3AEG6              	100.00%		L0PBX5              	100.00%
Bootstrap support for H3AEG6 as seed ortholog is 93%.
Bootstrap support for L0PBX5 as seed ortholog is 100%.

Group of orthologs #1158. Best score 103 bits
Score difference with first non-orthologous sequence - L.chalumnae:4 P.jiroveci:103

H3B605              	100.00%		L0PCM4              	100.00%
Bootstrap support for H3B605 as seed ortholog is 78%.
Bootstrap support for L0PCM4 as seed ortholog is 100%.

Group of orthologs #1159. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3BGY7              	100.00%		L0PBQ7              	100.00%
H3A4X3              	61.98%		
H3BHM5              	50.77%		
H2ZZF6              	40.44%		
H3A034              	19.34%		
H3B2I3              	12.53%		
H3AGQ3              	11.87%		
Bootstrap support for H3BGY7 as seed ortholog is 100%.
Bootstrap support for L0PBQ7 as seed ortholog is 100%.

Group of orthologs #1160. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3A3N3              	100.00%		L0PCQ4              	100.00%
H3ABR9              	100.00%		
Bootstrap support for H3A3N3 as seed ortholog is 100%.
Bootstrap support for H3ABR9 as seed ortholog is 100%.
Bootstrap support for L0PCQ4 as seed ortholog is 100%.

Group of orthologs #1161. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3AXH9              	100.00%		L0P9H0              	100.00%
H3B2A6              	97.50%		
Bootstrap support for H3AXH9 as seed ortholog is 100%.
Bootstrap support for L0P9H0 as seed ortholog is 100%.

Group of orthologs #1162. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3A3Y7              	100.00%		L0PA96              	100.00%
Bootstrap support for H3A3Y7 as seed ortholog is 100%.
Bootstrap support for L0PA96 as seed ortholog is 100%.

Group of orthologs #1163. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3AA97              	100.00%		L0P7T7              	100.00%
Bootstrap support for H3AA97 as seed ortholog is 100%.
Bootstrap support for L0P7T7 as seed ortholog is 100%.

Group of orthologs #1164. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3ALQ5              	100.00%		L0PAT2              	100.00%
Bootstrap support for H3ALQ5 as seed ortholog is 100%.
Bootstrap support for L0PAT2 as seed ortholog is 100%.

Group of orthologs #1165. Best score 102 bits
Score difference with first non-orthologous sequence - L.chalumnae:102 P.jiroveci:102

H3BFP8              	100.00%		L0PE10              	100.00%
Bootstrap support for H3BFP8 as seed ortholog is 100%.
Bootstrap support for L0PE10 as seed ortholog is 100%.

Group of orthologs #1166. Best score 101 bits
Score difference with first non-orthologous sequence - L.chalumnae:101 P.jiroveci:101

H3AMV3              	100.00%		L0PGZ1              	100.00%
                    	       		L0PGM3              	86.70%
Bootstrap support for H3AMV3 as seed ortholog is 100%.
Bootstrap support for L0PGZ1 as seed ortholog is 100%.

Group of orthologs #1167. Best score 101 bits
Score difference with first non-orthologous sequence - L.chalumnae:35 P.jiroveci:101

H3BC02              	100.00%		L0PDF0              	100.00%
H3AZX2              	5.97%		
Bootstrap support for H3BC02 as seed ortholog is 86%.
Bootstrap support for L0PDF0 as seed ortholog is 100%.

Group of orthologs #1168. Best score 101 bits
Score difference with first non-orthologous sequence - L.chalumnae:101 P.jiroveci:101

H3AN07              	100.00%		L0PBK9              	100.00%
Bootstrap support for H3AN07 as seed ortholog is 100%.
Bootstrap support for L0PBK9 as seed ortholog is 100%.

Group of orthologs #1169. Best score 101 bits
Score difference with first non-orthologous sequence - L.chalumnae:47 P.jiroveci:101

H3BHR6              	100.00%		L0PFQ6              	100.00%
Bootstrap support for H3BHR6 as seed ortholog is 92%.
Bootstrap support for L0PFQ6 as seed ortholog is 100%.

Group of orthologs #1170. Best score 100 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:100

H3AIT2              	100.00%		L0P8Q8              	100.00%
H3AUB8              	51.92%		
H2ZWP4              	14.55%		
Bootstrap support for H3AIT2 as seed ortholog is 100%.
Bootstrap support for L0P8Q8 as seed ortholog is 100%.

Group of orthologs #1171. Best score 100 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:100

H3A8E5              	100.00%		L0PC01              	100.00%
H3BAA6              	43.41%		
Bootstrap support for H3A8E5 as seed ortholog is 100%.
Bootstrap support for L0PC01 as seed ortholog is 100%.

Group of orthologs #1172. Best score 100 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:100

H3B253              	100.00%		L0P8R2              	100.00%
                    	       		L0P7W8              	96.55%
Bootstrap support for H3B253 as seed ortholog is 100%.
Bootstrap support for L0P8R2 as seed ortholog is 100%.

Group of orthologs #1173. Best score 100 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:100

H3AAH0              	100.00%		L0PAV4              	100.00%
Bootstrap support for H3AAH0 as seed ortholog is 100%.
Bootstrap support for L0PAV4 as seed ortholog is 100%.

Group of orthologs #1174. Best score 100 bits
Score difference with first non-orthologous sequence - L.chalumnae:53 P.jiroveci:100

H3B2X4              	100.00%		L0P9D5              	100.00%
Bootstrap support for H3B2X4 as seed ortholog is 92%.
Bootstrap support for L0P9D5 as seed ortholog is 100%.

Group of orthologs #1175. Best score 100 bits
Score difference with first non-orthologous sequence - L.chalumnae:100 P.jiroveci:55

H3B2Y9              	100.00%		L0PD96              	100.00%
Bootstrap support for H3B2Y9 as seed ortholog is 100%.
Bootstrap support for L0PD96 as seed ortholog is 99%.

Group of orthologs #1176. Best score 99 bits
Score difference with first non-orthologous sequence - L.chalumnae:56 P.jiroveci:99

H3A269              	100.00%		L0P701              	100.00%
Bootstrap support for H3A269 as seed ortholog is 93%.
Bootstrap support for L0P701 as seed ortholog is 100%.

Group of orthologs #1177. Best score 99 bits
Score difference with first non-orthologous sequence - L.chalumnae:99 P.jiroveci:99

H3A2P6              	100.00%		L0PGB3              	100.00%
Bootstrap support for H3A2P6 as seed ortholog is 100%.
Bootstrap support for L0PGB3 as seed ortholog is 100%.

Group of orthologs #1178. Best score 99 bits
Score difference with first non-orthologous sequence - L.chalumnae:22 P.jiroveci:99

H3AJA2              	100.00%		L0PEF8              	100.00%
Bootstrap support for H3AJA2 as seed ortholog is 72%.
Alternative seed ortholog is H3B8W4 (22 bits away from this cluster)
Bootstrap support for L0PEF8 as seed ortholog is 100%.

Group of orthologs #1179. Best score 99 bits
Score difference with first non-orthologous sequence - L.chalumnae:99 P.jiroveci:99

H3AKI6              	100.00%		L0PFF4              	100.00%
Bootstrap support for H3AKI6 as seed ortholog is 100%.
Bootstrap support for L0PFF4 as seed ortholog is 100%.

Group of orthologs #1180. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3AJN5              	100.00%		L0PC19              	100.00%
H3ACX3              	12.41%		
Bootstrap support for H3AJN5 as seed ortholog is 100%.
Bootstrap support for L0PC19 as seed ortholog is 100%.

Group of orthologs #1181. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H2ZYH4              	100.00%		L0P9T8              	100.00%
Bootstrap support for H2ZYH4 as seed ortholog is 100%.
Bootstrap support for L0P9T8 as seed ortholog is 100%.

Group of orthologs #1182. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3ALI4              	100.00%		L0PAW5              	100.00%
Bootstrap support for H3ALI4 as seed ortholog is 100%.
Bootstrap support for L0PAW5 as seed ortholog is 100%.

Group of orthologs #1183. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3AVA0              	100.00%		L0P6S2              	100.00%
Bootstrap support for H3AVA0 as seed ortholog is 100%.
Bootstrap support for L0P6S2 as seed ortholog is 100%.

Group of orthologs #1184. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3ANS9              	100.00%		L0PEX4              	100.00%
Bootstrap support for H3ANS9 as seed ortholog is 100%.
Bootstrap support for L0PEX4 as seed ortholog is 100%.

Group of orthologs #1185. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3B619              	100.00%		L0P9E6              	100.00%
Bootstrap support for H3B619 as seed ortholog is 100%.
Bootstrap support for L0P9E6 as seed ortholog is 100%.

Group of orthologs #1186. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3BGB3              	100.00%		L0P8A1              	100.00%
Bootstrap support for H3BGB3 as seed ortholog is 100%.
Bootstrap support for L0P8A1 as seed ortholog is 100%.

Group of orthologs #1187. Best score 98 bits
Score difference with first non-orthologous sequence - L.chalumnae:98 P.jiroveci:98

H3BAJ8              	100.00%		L0PGP3              	100.00%
Bootstrap support for H3BAJ8 as seed ortholog is 100%.
Bootstrap support for L0PGP3 as seed ortholog is 100%.

Group of orthologs #1188. Best score 97 bits
Score difference with first non-orthologous sequence - L.chalumnae:97 P.jiroveci:97

H3B5P1              	100.00%		L0P9F1              	100.00%
Bootstrap support for H3B5P1 as seed ortholog is 100%.
Bootstrap support for L0P9F1 as seed ortholog is 100%.

Group of orthologs #1189. Best score 97 bits
Score difference with first non-orthologous sequence - L.chalumnae:97 P.jiroveci:97

H3B5B2              	100.00%		L0PAR6              	100.00%
Bootstrap support for H3B5B2 as seed ortholog is 100%.
Bootstrap support for L0PAR6 as seed ortholog is 100%.

Group of orthologs #1190. Best score 97 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:97

H3B5S7              	100.00%		L0PE32              	100.00%
Bootstrap support for H3B5S7 as seed ortholog is 99%.
Bootstrap support for L0PE32 as seed ortholog is 100%.

Group of orthologs #1191. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3BBX3              	100.00%		L0P9F8              	100.00%
H3BCU3              	44.65%		
H3BI70              	44.10%		
H3B012              	37.01%		
Bootstrap support for H3BBX3 as seed ortholog is 100%.
Bootstrap support for L0P9F8 as seed ortholog is 100%.

Group of orthologs #1192. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3ALB9              	100.00%		L0PEF9              	100.00%
H3B6D6              	35.36%		L0PG49              	96.13%
Bootstrap support for H3ALB9 as seed ortholog is 100%.
Bootstrap support for L0PEF9 as seed ortholog is 100%.

Group of orthologs #1193. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3AKL5              	100.00%		L0PDP1              	100.00%
                    	       		L0PFL7              	56.12%
Bootstrap support for H3AKL5 as seed ortholog is 100%.
Bootstrap support for L0PDP1 as seed ortholog is 100%.

Group of orthologs #1194. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:11 P.jiroveci:96

H3BAH1              	100.00%		L0PDY4              	100.00%
H3B393              	36.98%		
Bootstrap support for H3BAH1 as seed ortholog is 61%.
Alternative seed ortholog is M3XI75 (11 bits away from this cluster)
Bootstrap support for L0PDY4 as seed ortholog is 100%.

Group of orthologs #1195. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:42 P.jiroveci:96

H2ZZC6              	100.00%		L0PFA1              	100.00%
Bootstrap support for H2ZZC6 as seed ortholog is 99%.
Bootstrap support for L0PFA1 as seed ortholog is 100%.

Group of orthologs #1196. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3A4M9              	100.00%		L0PG13              	100.00%
Bootstrap support for H3A4M9 as seed ortholog is 100%.
Bootstrap support for L0PG13 as seed ortholog is 100%.

Group of orthologs #1197. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3AHG9              	100.00%		L0PFM0              	100.00%
Bootstrap support for H3AHG9 as seed ortholog is 100%.
Bootstrap support for L0PFM0 as seed ortholog is 100%.

Group of orthologs #1198. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:21 P.jiroveci:96

H3ARY8              	100.00%		L0PAT3              	100.00%
Bootstrap support for H3ARY8 as seed ortholog is 96%.
Bootstrap support for L0PAT3 as seed ortholog is 100%.

Group of orthologs #1199. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3ASH2              	100.00%		L0PCI9              	100.00%
Bootstrap support for H3ASH2 as seed ortholog is 100%.
Bootstrap support for L0PCI9 as seed ortholog is 100%.

Group of orthologs #1200. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:96 P.jiroveci:96

H3AXF9              	100.00%		L0P9Z6              	100.00%
Bootstrap support for H3AXF9 as seed ortholog is 100%.
Bootstrap support for L0P9Z6 as seed ortholog is 100%.

Group of orthologs #1201. Best score 96 bits
Score difference with first non-orthologous sequence - L.chalumnae:42 P.jiroveci:96

M3XH19              	100.00%		L0PD56              	100.00%
Bootstrap support for M3XH19 as seed ortholog is 87%.
Bootstrap support for L0PD56 as seed ortholog is 100%.

Group of orthologs #1202. Best score 95 bits
Score difference with first non-orthologous sequence - L.chalumnae:2 P.jiroveci:95

H3A7J2              	100.00%		L0PB42              	100.00%
H3AXG1              	67.65%		
Bootstrap support for H3A7J2 as seed ortholog is 55%.
Alternative seed ortholog is H3B2A1 (2 bits away from this cluster)
Bootstrap support for L0PB42 as seed ortholog is 100%.

Group of orthologs #1203. Best score 95 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:95

H3A7P4              	100.00%		L0PFK1              	100.00%
H3ASS2              	12.50%		
Bootstrap support for H3A7P4 as seed ortholog is 100%.
Bootstrap support for L0PFK1 as seed ortholog is 100%.

Group of orthologs #1204. Best score 95 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:95

H3ADR3              	100.00%		L0PAD6              	100.00%
H3B5J0              	40.32%		
Bootstrap support for H3ADR3 as seed ortholog is 100%.
Bootstrap support for L0PAD6 as seed ortholog is 100%.

Group of orthologs #1205. Best score 95 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:95

H3AXV9              	100.00%		L0PEP8              	100.00%
Bootstrap support for H3AXV9 as seed ortholog is 100%.
Bootstrap support for L0PEP8 as seed ortholog is 100%.

Group of orthologs #1206. Best score 95 bits
Score difference with first non-orthologous sequence - L.chalumnae:95 P.jiroveci:95

H3BEQ0              	100.00%		L0PCQ5              	100.00%
Bootstrap support for H3BEQ0 as seed ortholog is 100%.
Bootstrap support for L0PCQ5 as seed ortholog is 100%.

Group of orthologs #1207. Best score 94 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:94

H3A6F9              	100.00%		L0PF82              	100.00%
Bootstrap support for H3A6F9 as seed ortholog is 100%.
Bootstrap support for L0PF82 as seed ortholog is 100%.

Group of orthologs #1208. Best score 94 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:94

H3AFW2              	100.00%		L0PE40              	100.00%
Bootstrap support for H3AFW2 as seed ortholog is 100%.
Bootstrap support for L0PE40 as seed ortholog is 100%.

Group of orthologs #1209. Best score 94 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:94

H3AJ45              	100.00%		L0PEC7              	100.00%
Bootstrap support for H3AJ45 as seed ortholog is 100%.
Bootstrap support for L0PEC7 as seed ortholog is 100%.

Group of orthologs #1210. Best score 94 bits
Score difference with first non-orthologous sequence - L.chalumnae:94 P.jiroveci:94

H3ATL7              	100.00%		L0PDQ8              	100.00%
Bootstrap support for H3ATL7 as seed ortholog is 100%.
Bootstrap support for L0PDQ8 as seed ortholog is 100%.

Group of orthologs #1211. Best score 94 bits
Score difference with first non-orthologous sequence - L.chalumnae:11 P.jiroveci:94

H3B3Q7              	100.00%		L0PC89              	100.00%
Bootstrap support for H3B3Q7 as seed ortholog is 70%.
Alternative seed ortholog is H3BFV1 (11 bits away from this cluster)
Bootstrap support for L0PC89 as seed ortholog is 100%.

Group of orthologs #1212. Best score 94 bits
Score difference with first non-orthologous sequence - L.chalumnae:22 P.jiroveci:94

H3BFX3              	100.00%		L0PDW2              	100.00%
Bootstrap support for H3BFX3 as seed ortholog is 71%.
Alternative seed ortholog is H3B8W4 (22 bits away from this cluster)
Bootstrap support for L0PDW2 as seed ortholog is 100%.

Group of orthologs #1213. Best score 93 bits
Score difference with first non-orthologous sequence - L.chalumnae:93 P.jiroveci:93

H3A4A5              	100.00%		L0P8Z4              	100.00%
H3ACI2              	19.23%		
H3A870              	15.93%		
Bootstrap support for H3A4A5 as seed ortholog is 100%.
Bootstrap support for L0P8Z4 as seed ortholog is 100%.

Group of orthologs #1214. Best score 93 bits
Score difference with first non-orthologous sequence - L.chalumnae:93 P.jiroveci:93

M3XJA3              	100.00%		L0PHH5              	100.00%
H3BAW3              	27.31%		
Bootstrap support for M3XJA3 as seed ortholog is 100%.
Bootstrap support for L0PHH5 as seed ortholog is 100%.

Group of orthologs #1215. Best score 93 bits
Score difference with first non-orthologous sequence - L.chalumnae:93 P.jiroveci:26

H3A569              	100.00%		L0PFT5              	100.00%
Bootstrap support for H3A569 as seed ortholog is 100%.
Bootstrap support for L0PFT5 as seed ortholog is 85%.

Group of orthologs #1216. Best score 93 bits
Score difference with first non-orthologous sequence - L.chalumnae:93 P.jiroveci:93

H3AGY8              	100.00%		L0PE13              	100.00%
Bootstrap support for H3AGY8 as seed ortholog is 100%.
Bootstrap support for L0PE13 as seed ortholog is 100%.

Group of orthologs #1217. Best score 93 bits
Score difference with first non-orthologous sequence - L.chalumnae:93 P.jiroveci:93

H3AYD6              	100.00%		L0P8B5              	100.00%
Bootstrap support for H3AYD6 as seed ortholog is 100%.
Bootstrap support for L0P8B5 as seed ortholog is 100%.

Group of orthologs #1218. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3ASW5              	100.00%		L0PEK0              	100.00%
H3B547              	47.25%		
H3AEB8              	21.98%		
Bootstrap support for H3ASW5 as seed ortholog is 100%.
Bootstrap support for L0PEK0 as seed ortholog is 100%.

Group of orthologs #1219. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3AGE2              	100.00%		L0PDD4              	100.00%
H3ATA3              	53.01%		
Bootstrap support for H3AGE2 as seed ortholog is 100%.
Bootstrap support for L0PDD4 as seed ortholog is 100%.

Group of orthologs #1220. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3AGZ0              	100.00%		L0PD23              	100.00%
Bootstrap support for H3AGZ0 as seed ortholog is 100%.
Bootstrap support for L0PD23 as seed ortholog is 100%.

Group of orthologs #1221. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3AHX9              	100.00%		L0PGP4              	100.00%
Bootstrap support for H3AHX9 as seed ortholog is 100%.
Bootstrap support for L0PGP4 as seed ortholog is 100%.

Group of orthologs #1222. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3AZR4              	100.00%		L0PA68              	100.00%
Bootstrap support for H3AZR4 as seed ortholog is 100%.
Bootstrap support for L0PA68 as seed ortholog is 100%.

Group of orthologs #1223. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3B7Z0              	100.00%		L0PF95              	100.00%
Bootstrap support for H3B7Z0 as seed ortholog is 100%.
Bootstrap support for L0PF95 as seed ortholog is 100%.

Group of orthologs #1224. Best score 92 bits
Score difference with first non-orthologous sequence - L.chalumnae:92 P.jiroveci:92

H3BCA1              	100.00%		L0PDG4              	100.00%
Bootstrap support for H3BCA1 as seed ortholog is 100%.
Bootstrap support for L0PDG4 as seed ortholog is 100%.

Group of orthologs #1225. Best score 91 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:91

H3A8C5              	100.00%		L0P8Y9              	100.00%
H3AJ10              	100.00%		
Bootstrap support for H3A8C5 as seed ortholog is 100%.
Bootstrap support for H3AJ10 as seed ortholog is 100%.
Bootstrap support for L0P8Y9 as seed ortholog is 100%.

Group of orthologs #1226. Best score 91 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:91

H3BA80              	100.00%		L0P9B5              	100.00%
H3A2U2              	8.12%		
Bootstrap support for H3BA80 as seed ortholog is 100%.
Bootstrap support for L0P9B5 as seed ortholog is 100%.

Group of orthologs #1227. Best score 91 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:91

H3AGP5              	100.00%		L0PCU6              	100.00%
Bootstrap support for H3AGP5 as seed ortholog is 100%.
Bootstrap support for L0PCU6 as seed ortholog is 100%.

Group of orthologs #1228. Best score 91 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:91

H3B856              	100.00%		L0PBQ0              	100.00%
Bootstrap support for H3B856 as seed ortholog is 100%.
Bootstrap support for L0PBQ0 as seed ortholog is 100%.

Group of orthologs #1229. Best score 91 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:91

H3BBS0              	100.00%		L0PB59              	100.00%
Bootstrap support for H3BBS0 as seed ortholog is 100%.
Bootstrap support for L0PB59 as seed ortholog is 100%.

Group of orthologs #1230. Best score 91 bits
Score difference with first non-orthologous sequence - L.chalumnae:91 P.jiroveci:91

H3BDH2              	100.00%		L0PEF7              	100.00%
Bootstrap support for H3BDH2 as seed ortholog is 100%.
Bootstrap support for L0PEF7 as seed ortholog is 100%.

Group of orthologs #1231. Best score 90 bits
Score difference with first non-orthologous sequence - L.chalumnae:90 P.jiroveci:90

H3AI51              	100.00%		L0PD39              	100.00%
H3B558              	52.80%		
Bootstrap support for H3AI51 as seed ortholog is 100%.
Bootstrap support for L0PD39 as seed ortholog is 100%.

Group of orthologs #1232. Best score 90 bits
Score difference with first non-orthologous sequence - L.chalumnae:90 P.jiroveci:90

H3BDD8              	100.00%		L0PF90              	100.00%
M3XL48              	46.80%		
Bootstrap support for H3BDD8 as seed ortholog is 100%.
Bootstrap support for L0PF90 as seed ortholog is 100%.

Group of orthologs #1233. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:3

H3AFV8              	100.00%		L0P9Q9              	100.00%
H3AXL3              	49.49%		
Bootstrap support for H3AFV8 as seed ortholog is 100%.
Bootstrap support for L0P9Q9 as seed ortholog is 68%.
Alternative seed ortholog is L0PGA6 (3 bits away from this cluster)

Group of orthologs #1234. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3AYP4              	100.00%		L0PEX2              	100.00%
H3B328              	29.05%		
Bootstrap support for H3AYP4 as seed ortholog is 100%.
Bootstrap support for L0PEX2 as seed ortholog is 100%.

Group of orthologs #1235. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H2ZZT7              	100.00%		L0P7C7              	100.00%
Bootstrap support for H2ZZT7 as seed ortholog is 100%.
Bootstrap support for L0P7C7 as seed ortholog is 100%.

Group of orthologs #1236. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3A9R9              	100.00%		L0P8U3              	100.00%
Bootstrap support for H3A9R9 as seed ortholog is 100%.
Bootstrap support for L0P8U3 as seed ortholog is 100%.

Group of orthologs #1237. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3AA50              	100.00%		L0PCZ5              	100.00%
Bootstrap support for H3AA50 as seed ortholog is 100%.
Bootstrap support for L0PCZ5 as seed ortholog is 100%.

Group of orthologs #1238. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3AII2              	100.00%		L0PCY4              	100.00%
Bootstrap support for H3AII2 as seed ortholog is 100%.
Bootstrap support for L0PCY4 as seed ortholog is 100%.

Group of orthologs #1239. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3B6N8              	100.00%		L0PDS8              	100.00%
Bootstrap support for H3B6N8 as seed ortholog is 100%.
Bootstrap support for L0PDS8 as seed ortholog is 100%.

Group of orthologs #1240. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3B5U9              	100.00%		L0PII9              	100.00%
Bootstrap support for H3B5U9 as seed ortholog is 100%.
Bootstrap support for L0PII9 as seed ortholog is 100%.

Group of orthologs #1241. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3BD94              	100.00%		L0PCG6              	100.00%
Bootstrap support for H3BD94 as seed ortholog is 100%.
Bootstrap support for L0PCG6 as seed ortholog is 100%.

Group of orthologs #1242. Best score 89 bits
Score difference with first non-orthologous sequence - L.chalumnae:89 P.jiroveci:89

H3BIM0              	100.00%		L0PCF7              	100.00%
Bootstrap support for H3BIM0 as seed ortholog is 100%.
Bootstrap support for L0PCF7 as seed ortholog is 100%.

Group of orthologs #1243. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:24

H3AP95              	100.00%		L0PB92              	100.00%
H2ZW99              	42.12%		
Bootstrap support for H3AP95 as seed ortholog is 100%.
Bootstrap support for L0PB92 as seed ortholog is 82%.

Group of orthologs #1244. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:26 P.jiroveci:88

H3ARQ4              	100.00%		L0PCN8              	100.00%
H3BDW4              	54.99%		
Bootstrap support for H3ARQ4 as seed ortholog is 75%.
Bootstrap support for L0PCN8 as seed ortholog is 100%.

Group of orthologs #1245. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:88

H3A573              	100.00%		L0P7Y1              	100.00%
Bootstrap support for H3A573 as seed ortholog is 100%.
Bootstrap support for L0P7Y1 as seed ortholog is 100%.

Group of orthologs #1246. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:88

H3A287              	100.00%		L0PBX4              	100.00%
Bootstrap support for H3A287 as seed ortholog is 100%.
Bootstrap support for L0PBX4 as seed ortholog is 100%.

Group of orthologs #1247. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:15

H3B281              	100.00%		L0PAT8              	100.00%
Bootstrap support for H3B281 as seed ortholog is 100%.
Bootstrap support for L0PAT8 as seed ortholog is 71%.
Alternative seed ortholog is L0PEV0 (15 bits away from this cluster)

Group of orthologs #1248. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:88

H3AXI6              	100.00%		L0PF35              	100.00%
Bootstrap support for H3AXI6 as seed ortholog is 100%.
Bootstrap support for L0PF35 as seed ortholog is 100%.

Group of orthologs #1249. Best score 88 bits
Score difference with first non-orthologous sequence - L.chalumnae:88 P.jiroveci:88

H3B9T0              	100.00%		L0PB93              	100.00%
Bootstrap support for H3B9T0 as seed ortholog is 100%.
Bootstrap support for L0PB93 as seed ortholog is 100%.

Group of orthologs #1250. Best score 87 bits
Score difference with first non-orthologous sequence - L.chalumnae:87 P.jiroveci:87

H3AUU8              	100.00%		L0PI42              	100.00%
H3AHX6              	60.34%		
Bootstrap support for H3AUU8 as seed ortholog is 100%.
Bootstrap support for L0PI42 as seed ortholog is 100%.

Group of orthologs #1251. Best score 87 bits
Score difference with first non-orthologous sequence - L.chalumnae:87 P.jiroveci:87

H3B4N4              	100.00%		L0PFU9              	100.00%
H3ABK2              	68.35%		
Bootstrap support for H3B4N4 as seed ortholog is 100%.
Bootstrap support for L0PFU9 as seed ortholog is 100%.

Group of orthologs #1252. Best score 87 bits
Score difference with first non-orthologous sequence - L.chalumnae:11 P.jiroveci:87

H3A300              	100.00%		L0PEL1              	100.00%
Bootstrap support for H3A300 as seed ortholog is 44%.
Alternative seed ortholog is H3B5N8 (11 bits away from this cluster)
Bootstrap support for L0PEL1 as seed ortholog is 100%.

Group of orthologs #1253. Best score 87 bits
Score difference with first non-orthologous sequence - L.chalumnae:87 P.jiroveci:87

H3AHQ0              	100.00%		L0PHU9              	100.00%
Bootstrap support for H3AHQ0 as seed ortholog is 100%.
Bootstrap support for L0PHU9 as seed ortholog is 100%.

Group of orthologs #1254. Best score 87 bits
Score difference with first non-orthologous sequence - L.chalumnae:87 P.jiroveci:87

H3BA19              	100.00%		L0P9M2              	100.00%
Bootstrap support for H3BA19 as seed ortholog is 100%.
Bootstrap support for L0P9M2 as seed ortholog is 100%.

Group of orthologs #1255. Best score 86 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:86

H3AM83              	100.00%		L0PGS0              	100.00%
H3B755              	56.00%		
Bootstrap support for H3AM83 as seed ortholog is 100%.
Bootstrap support for L0PGS0 as seed ortholog is 100%.

Group of orthologs #1256. Best score 86 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:86

H3BII5              	100.00%		L0P8W8              	100.00%
                    	       		L0P9K5              	56.02%
Bootstrap support for H3BII5 as seed ortholog is 100%.
Bootstrap support for L0P8W8 as seed ortholog is 100%.

Group of orthologs #1257. Best score 86 bits
Score difference with first non-orthologous sequence - L.chalumnae:18 P.jiroveci:86

H2ZUX7              	100.00%		L0PFE2              	100.00%
Bootstrap support for H2ZUX7 as seed ortholog is 85%.
Bootstrap support for L0PFE2 as seed ortholog is 100%.

Group of orthologs #1258. Best score 86 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:86

H3A8W3              	100.00%		L0PDC5              	100.00%
Bootstrap support for H3A8W3 as seed ortholog is 100%.
Bootstrap support for L0PDC5 as seed ortholog is 100%.

Group of orthologs #1259. Best score 86 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:86

H3A970              	100.00%		L0PIR4              	100.00%
Bootstrap support for H3A970 as seed ortholog is 100%.
Bootstrap support for L0PIR4 as seed ortholog is 100%.

Group of orthologs #1260. Best score 86 bits
Score difference with first non-orthologous sequence - L.chalumnae:86 P.jiroveci:86

H3AVS5              	100.00%		L0PBA3              	100.00%
Bootstrap support for H3AVS5 as seed ortholog is 100%.
Bootstrap support for L0PBA3 as seed ortholog is 100%.

Group of orthologs #1261. Best score 85 bits
Score difference with first non-orthologous sequence - L.chalumnae:85 P.jiroveci:85

H3AZ81              	100.00%		L0PDL0              	100.00%
H3ANQ2              	54.20%		L0PIH1              	91.80%
H3B8G8              	53.12%		
Bootstrap support for H3AZ81 as seed ortholog is 100%.
Bootstrap support for L0PDL0 as seed ortholog is 100%.

Group of orthologs #1262. Best score 85 bits
Score difference with first non-orthologous sequence - L.chalumnae:85 P.jiroveci:85

H3BE62              	100.00%		L0PFM9              	100.00%
H3ADC8              	32.61%		
Bootstrap support for H3BE62 as seed ortholog is 100%.
Bootstrap support for L0PFM9 as seed ortholog is 100%.

Group of orthologs #1263. Best score 85 bits
Score difference with first non-orthologous sequence - L.chalumnae:85 P.jiroveci:85

H3AUV4              	100.00%		L0PD30              	100.00%
Bootstrap support for H3AUV4 as seed ortholog is 100%.
Bootstrap support for L0PD30 as seed ortholog is 100%.

Group of orthologs #1264. Best score 85 bits
Score difference with first non-orthologous sequence - L.chalumnae:85 P.jiroveci:85

H3BDT4              	100.00%		L0P8J7              	100.00%
Bootstrap support for H3BDT4 as seed ortholog is 100%.
Bootstrap support for L0P8J7 as seed ortholog is 100%.

Group of orthologs #1265. Best score 85 bits
Score difference with first non-orthologous sequence - L.chalumnae:85 P.jiroveci:85

H3BDB8              	100.00%		L0PF93              	100.00%
Bootstrap support for H3BDB8 as seed ortholog is 100%.
Bootstrap support for L0PF93 as seed ortholog is 100%.

Group of orthologs #1266. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

M3XIX3              	100.00%		L0PC10              	100.00%
                    	       		L0PF86              	100.00%
Bootstrap support for M3XIX3 as seed ortholog is 100%.
Bootstrap support for L0PC10 as seed ortholog is 100%.
Bootstrap support for L0PF86 as seed ortholog is 100%.

Group of orthologs #1267. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

H3A814              	100.00%		L0PCM3              	100.00%
Bootstrap support for H3A814 as seed ortholog is 100%.
Bootstrap support for L0PCM3 as seed ortholog is 100%.

Group of orthologs #1268. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

H3B1B1              	100.00%		L0P8Q1              	100.00%
Bootstrap support for H3B1B1 as seed ortholog is 100%.
Bootstrap support for L0P8Q1 as seed ortholog is 100%.

Group of orthologs #1269. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

H3B650              	100.00%		L0PBP1              	100.00%
Bootstrap support for H3B650 as seed ortholog is 100%.
Bootstrap support for L0PBP1 as seed ortholog is 100%.

Group of orthologs #1270. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

H3BCJ8              	100.00%		L0P883              	100.00%
Bootstrap support for H3BCJ8 as seed ortholog is 100%.
Bootstrap support for L0P883 as seed ortholog is 100%.

Group of orthologs #1271. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

H3B6G4              	100.00%		L0PEA3              	100.00%
Bootstrap support for H3B6G4 as seed ortholog is 100%.
Bootstrap support for L0PEA3 as seed ortholog is 100%.

Group of orthologs #1272. Best score 84 bits
Score difference with first non-orthologous sequence - L.chalumnae:84 P.jiroveci:84

H3BEP6              	100.00%		L0PB39              	100.00%
Bootstrap support for H3BEP6 as seed ortholog is 100%.
Bootstrap support for L0PB39 as seed ortholog is 100%.

Group of orthologs #1273. Best score 83 bits
Score difference with first non-orthologous sequence - L.chalumnae:83 P.jiroveci:83

H3ADL5              	100.00%		L0P7T1              	100.00%
H3AFF7              	17.80%		
Bootstrap support for H3ADL5 as seed ortholog is 100%.
Bootstrap support for L0P7T1 as seed ortholog is 100%.

Group of orthologs #1274. Best score 82 bits
Score difference with first non-orthologous sequence - L.chalumnae:82 P.jiroveci:82

H3A243              	100.00%		L0P9D9              	100.00%
Bootstrap support for H3A243 as seed ortholog is 100%.
Bootstrap support for L0P9D9 as seed ortholog is 100%.

Group of orthologs #1275. Best score 82 bits
Score difference with first non-orthologous sequence - L.chalumnae:82 P.jiroveci:82

M3XH57              	100.00%		L0PFH8              	100.00%
Bootstrap support for M3XH57 as seed ortholog is 100%.
Bootstrap support for L0PFH8 as seed ortholog is 100%.

Group of orthologs #1276. Best score 82 bits
Score difference with first non-orthologous sequence - L.chalumnae:82 P.jiroveci:82

M3XK51              	100.00%		L0PFT3              	100.00%
Bootstrap support for M3XK51 as seed ortholog is 100%.
Bootstrap support for L0PFT3 as seed ortholog is 100%.

Group of orthologs #1277. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3ABM0              	100.00%		L0PBD3              	100.00%
H3AQ09              	100.00%		L0PCE5              	100.00%
Bootstrap support for H3ABM0 as seed ortholog is 100%.
Bootstrap support for H3AQ09 as seed ortholog is 100%.
Bootstrap support for L0PBD3 as seed ortholog is 100%.
Bootstrap support for L0PCE5 as seed ortholog is 100%.

Group of orthologs #1278. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

M3XHL9              	100.00%		L0PHI0              	100.00%
H3B1F2              	17.95%		
H3A0P0              	13.11%		
Bootstrap support for M3XHL9 as seed ortholog is 100%.
Bootstrap support for L0PHI0 as seed ortholog is 100%.

Group of orthologs #1279. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3AUG6              	100.00%		L0PEQ9              	100.00%
H3BED0              	12.20%		
Bootstrap support for H3AUG6 as seed ortholog is 100%.
Bootstrap support for L0PEQ9 as seed ortholog is 100%.

Group of orthologs #1280. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H2ZWA8              	100.00%		L0PF50              	100.00%
Bootstrap support for H2ZWA8 as seed ortholog is 100%.
Bootstrap support for L0PF50 as seed ortholog is 100%.

Group of orthologs #1281. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3AGN9              	100.00%		L0PBC9              	100.00%
Bootstrap support for H3AGN9 as seed ortholog is 100%.
Bootstrap support for L0PBC9 as seed ortholog is 100%.

Group of orthologs #1282. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3AE33              	100.00%		L0PDW0              	100.00%
Bootstrap support for H3AE33 as seed ortholog is 100%.
Bootstrap support for L0PDW0 as seed ortholog is 100%.

Group of orthologs #1283. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3AAA8              	100.00%		L0PHZ2              	100.00%
Bootstrap support for H3AAA8 as seed ortholog is 100%.
Bootstrap support for L0PHZ2 as seed ortholog is 100%.

Group of orthologs #1284. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3AYZ5              	100.00%		L0PD90              	100.00%
Bootstrap support for H3AYZ5 as seed ortholog is 100%.
Bootstrap support for L0PD90 as seed ortholog is 100%.

Group of orthologs #1285. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3B4X7              	100.00%		L0PDR4              	100.00%
Bootstrap support for H3B4X7 as seed ortholog is 100%.
Bootstrap support for L0PDR4 as seed ortholog is 100%.

Group of orthologs #1286. Best score 81 bits
Score difference with first non-orthologous sequence - L.chalumnae:81 P.jiroveci:81

H3BAX6              	100.00%		L0PFN7              	100.00%
Bootstrap support for H3BAX6 as seed ortholog is 100%.
Bootstrap support for L0PFN7 as seed ortholog is 100%.

Group of orthologs #1287. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

H3AJ74              	100.00%		L0PB40              	100.00%
M3XI98              	15.43%		
H3AX46              	12.06%		
I6L4Q1              	10.93%		
H2ZX94              	10.29%		
H3A147              	6.91%		
Bootstrap support for H3AJ74 as seed ortholog is 100%.
Bootstrap support for L0PB40 as seed ortholog is 100%.

Group of orthologs #1288. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

H3AX36              	100.00%		L0PCJ4              	100.00%
H3AIC5              	56.14%		
Bootstrap support for H3AX36 as seed ortholog is 100%.
Bootstrap support for L0PCJ4 as seed ortholog is 100%.

Group of orthologs #1289. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

H3B8Z5              	100.00%		L0PE67              	100.00%
H3AZB8              	41.76%		
Bootstrap support for H3B8Z5 as seed ortholog is 100%.
Bootstrap support for L0PE67 as seed ortholog is 100%.

Group of orthologs #1290. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

H2ZSG8              	100.00%		L0PCQ3              	100.00%
Bootstrap support for H2ZSG8 as seed ortholog is 100%.
Bootstrap support for L0PCQ3 as seed ortholog is 100%.

Group of orthologs #1291. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

H3B668              	100.00%		L0P724              	100.00%
Bootstrap support for H3B668 as seed ortholog is 100%.
Bootstrap support for L0P724 as seed ortholog is 100%.

Group of orthologs #1292. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

H3BDX1              	100.00%		L0PAF6              	100.00%
Bootstrap support for H3BDX1 as seed ortholog is 100%.
Bootstrap support for L0PAF6 as seed ortholog is 100%.

Group of orthologs #1293. Best score 80 bits
Score difference with first non-orthologous sequence - L.chalumnae:80 P.jiroveci:80

M3XJ13              	100.00%		L0P7K1              	100.00%
Bootstrap support for M3XJ13 as seed ortholog is 100%.
Bootstrap support for L0P7K1 as seed ortholog is 100%.

Group of orthologs #1294. Best score 79 bits
Score difference with first non-orthologous sequence - L.chalumnae:79 P.jiroveci:79

H3B577              	100.00%		L0P8R9              	100.00%
Bootstrap support for H3B577 as seed ortholog is 100%.
Bootstrap support for L0P8R9 as seed ortholog is 100%.

Group of orthologs #1295. Best score 79 bits
Score difference with first non-orthologous sequence - L.chalumnae:79 P.jiroveci:79

H3B9V9              	100.00%		L0P9T3              	100.00%
Bootstrap support for H3B9V9 as seed ortholog is 100%.
Bootstrap support for L0P9T3 as seed ortholog is 100%.

Group of orthologs #1296. Best score 78 bits
Score difference with first non-orthologous sequence - L.chalumnae:78 P.jiroveci:78

H3AQB5              	100.00%		L0P887              	100.00%
H3AAI2              	30.15%		
Bootstrap support for H3AQB5 as seed ortholog is 100%.
Bootstrap support for L0P887 as seed ortholog is 100%.

Group of orthologs #1297. Best score 78 bits
Score difference with first non-orthologous sequence - L.chalumnae:78 P.jiroveci:78

H3AAF0              	100.00%		L0PFB0              	100.00%
Bootstrap support for H3AAF0 as seed ortholog is 100%.
Bootstrap support for L0PFB0 as seed ortholog is 100%.

Group of orthologs #1298. Best score 78 bits
Score difference with first non-orthologous sequence - L.chalumnae:78 P.jiroveci:78

M3XLH2              	100.00%		L0PBR0              	100.00%
Bootstrap support for M3XLH2 as seed ortholog is 100%.
Bootstrap support for L0PBR0 as seed ortholog is 100%.

Group of orthologs #1299. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

H3AV57              	100.00%		L0P929              	100.00%
M3XL79              	53.44%		
Bootstrap support for H3AV57 as seed ortholog is 100%.
Bootstrap support for L0P929 as seed ortholog is 100%.

Group of orthologs #1300. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

M3XGW0              	100.00%		L0PE88              	100.00%
H3A6X7              	16.37%		
Bootstrap support for M3XGW0 as seed ortholog is 100%.
Bootstrap support for L0PE88 as seed ortholog is 100%.

Group of orthologs #1301. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

H2ZRU6              	100.00%		L0PA37              	100.00%
Bootstrap support for H2ZRU6 as seed ortholog is 100%.
Bootstrap support for L0PA37 as seed ortholog is 100%.

Group of orthologs #1302. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

H2ZZI9              	100.00%		L0PAS9              	100.00%
Bootstrap support for H2ZZI9 as seed ortholog is 100%.
Bootstrap support for L0PAS9 as seed ortholog is 100%.

Group of orthologs #1303. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

H3AFF2              	100.00%		L0P9V3              	100.00%
Bootstrap support for H3AFF2 as seed ortholog is 100%.
Bootstrap support for L0P9V3 as seed ortholog is 100%.

Group of orthologs #1304. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

H3ABN6              	100.00%		L0PGX1              	100.00%
Bootstrap support for H3ABN6 as seed ortholog is 100%.
Bootstrap support for L0PGX1 as seed ortholog is 100%.

Group of orthologs #1305. Best score 77 bits
Score difference with first non-orthologous sequence - L.chalumnae:77 P.jiroveci:77

H3B5S9              	100.00%		L0PA21              	100.00%
Bootstrap support for H3B5S9 as seed ortholog is 100%.
Bootstrap support for L0PA21 as seed ortholog is 100%.

Group of orthologs #1306. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H2ZX31              	100.00%		L0PIN1              	100.00%
                    	       		L0PDW7              	48.57%
Bootstrap support for H2ZX31 as seed ortholog is 100%.
Bootstrap support for L0PIN1 as seed ortholog is 100%.

Group of orthologs #1307. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H3A029              	100.00%		L0P868              	100.00%
Bootstrap support for H3A029 as seed ortholog is 100%.
Bootstrap support for L0P868 as seed ortholog is 100%.

Group of orthologs #1308. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H3A598              	100.00%		L0PDB5              	100.00%
Bootstrap support for H3A598 as seed ortholog is 100%.
Bootstrap support for L0PDB5 as seed ortholog is 100%.

Group of orthologs #1309. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H3A5V2              	100.00%		L0PFL2              	100.00%
Bootstrap support for H3A5V2 as seed ortholog is 100%.
Bootstrap support for L0PFL2 as seed ortholog is 100%.

Group of orthologs #1310. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H3AVP2              	100.00%		L0PBD5              	100.00%
Bootstrap support for H3AVP2 as seed ortholog is 100%.
Bootstrap support for L0PBD5 as seed ortholog is 100%.

Group of orthologs #1311. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H3B4N5              	100.00%		L0PDE2              	100.00%
Bootstrap support for H3B4N5 as seed ortholog is 100%.
Bootstrap support for L0PDE2 as seed ortholog is 100%.

Group of orthologs #1312. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:76

H3B6D7              	100.00%		L0PD91              	100.00%
Bootstrap support for H3B6D7 as seed ortholog is 100%.
Bootstrap support for L0PD91 as seed ortholog is 100%.

Group of orthologs #1313. Best score 76 bits
Score difference with first non-orthologous sequence - L.chalumnae:76 P.jiroveci:32

M3XHD0              	100.00%		L0P9K1              	100.00%
Bootstrap support for M3XHD0 as seed ortholog is 100%.
Bootstrap support for L0P9K1 as seed ortholog is 99%.

Group of orthologs #1314. Best score 75 bits
Score difference with first non-orthologous sequence - L.chalumnae:75 P.jiroveci:75

H3AY61              	100.00%		L0PAZ6              	100.00%
H3AFA3              	40.71%		
Bootstrap support for H3AY61 as seed ortholog is 100%.
Bootstrap support for L0PAZ6 as seed ortholog is 100%.

Group of orthologs #1315. Best score 75 bits
Score difference with first non-orthologous sequence - L.chalumnae:75 P.jiroveci:75

H3B1M8              	100.00%		L0PER0              	100.00%
H2ZVZ0              	25.16%		
Bootstrap support for H3B1M8 as seed ortholog is 100%.
Bootstrap support for L0PER0 as seed ortholog is 100%.

Group of orthologs #1316. Best score 75 bits
Score difference with first non-orthologous sequence - L.chalumnae:75 P.jiroveci:75

H3ASD7              	100.00%		L0PFR5              	100.00%
Bootstrap support for H3ASD7 as seed ortholog is 100%.
Bootstrap support for L0PFR5 as seed ortholog is 100%.

Group of orthologs #1317. Best score 75 bits
Score difference with first non-orthologous sequence - L.chalumnae:75 P.jiroveci:75

H3BB34              	100.00%		L0P988              	100.00%
Bootstrap support for H3BB34 as seed ortholog is 100%.
Bootstrap support for L0P988 as seed ortholog is 100%.

Group of orthologs #1318. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3AN94              	100.00%		L0PAD3              	100.00%
H3BI93              	39.52%		
H2ZYV5              	32.98%		
H3AHC5              	21.39%		
M3XIN1              	7.38%		
H3BDQ8              	7.17%		
H3AIF7              	6.64%		
H3B9P5              	5.37%		
Bootstrap support for H3AN94 as seed ortholog is 100%.
Bootstrap support for L0PAD3 as seed ortholog is 100%.

Group of orthologs #1319. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3A1C0              	100.00%		L0PAP8              	100.00%
Bootstrap support for H3A1C0 as seed ortholog is 100%.
Bootstrap support for L0PAP8 as seed ortholog is 100%.

Group of orthologs #1320. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3AF77              	100.00%		L0P954              	100.00%
Bootstrap support for H3AF77 as seed ortholog is 100%.
Bootstrap support for L0P954 as seed ortholog is 100%.

Group of orthologs #1321. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3AMS1              	100.00%		L0PC95              	100.00%
Bootstrap support for H3AMS1 as seed ortholog is 100%.
Bootstrap support for L0PC95 as seed ortholog is 100%.

Group of orthologs #1322. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3AIA8              	100.00%		L0PG35              	100.00%
Bootstrap support for H3AIA8 as seed ortholog is 100%.
Bootstrap support for L0PG35 as seed ortholog is 100%.

Group of orthologs #1323. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3B0P6              	100.00%		L0PFG8              	100.00%
Bootstrap support for H3B0P6 as seed ortholog is 100%.
Bootstrap support for L0PFG8 as seed ortholog is 100%.

Group of orthologs #1324. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3BGP0              	100.00%		L0PE73              	100.00%
Bootstrap support for H3BGP0 as seed ortholog is 100%.
Bootstrap support for L0PE73 as seed ortholog is 100%.

Group of orthologs #1325. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:74 P.jiroveci:74

H3BIT2              	100.00%		L0PCN6              	100.00%
Bootstrap support for H3BIT2 as seed ortholog is 100%.
Bootstrap support for L0PCN6 as seed ortholog is 100%.

Group of orthologs #1326. Best score 74 bits
Score difference with first non-orthologous sequence - L.chalumnae:0 P.jiroveci:13

M3XHA4              	100.00%		L0PCS6              	100.00%
Bootstrap support for M3XHA4 as seed ortholog is 42%.
Alternative seed ortholog is H3AQ80 (0 bits away from this cluster)
Bootstrap support for L0PCS6 as seed ortholog is 59%.
Alternative seed ortholog is L0P9X1 (13 bits away from this cluster)

Group of orthologs #1327. Best score 73 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:73

H3AWB1              	100.00%		L0P831              	100.00%
                    	       		L0PDC1              	41.95%
Bootstrap support for H3AWB1 as seed ortholog is 100%.
Bootstrap support for L0P831 as seed ortholog is 100%.

Group of orthologs #1328. Best score 73 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:73

H3A4J3              	100.00%		L0PAF1              	100.00%
Bootstrap support for H3A4J3 as seed ortholog is 100%.
Bootstrap support for L0PAF1 as seed ortholog is 100%.

Group of orthologs #1329. Best score 73 bits
Score difference with first non-orthologous sequence - L.chalumnae:73 P.jiroveci:73

H3BEE6              	100.00%		L0PDX4              	100.00%
Bootstrap support for H3BEE6 as seed ortholog is 100%.
Bootstrap support for L0PDX4 as seed ortholog is 100%.

Group of orthologs #1330. Best score 72 bits
Score difference with first non-orthologous sequence - L.chalumnae:4 P.jiroveci:72

H3A3K0              	100.00%		L0PF67              	100.00%
H3BGQ0              	48.29%		
H3BGU0              	46.38%		
H3ASP1              	41.15%		
Bootstrap support for H3A3K0 as seed ortholog is 81%.
Bootstrap support for L0PF67 as seed ortholog is 100%.

Group of orthologs #1331. Best score 72 bits
Score difference with first non-orthologous sequence - L.chalumnae:72 P.jiroveci:72

M3XKW9              	100.00%		L0PC31              	100.00%
H3AZW8              	10.93%		L0PGG5              	84.64%
Bootstrap support for M3XKW9 as seed ortholog is 100%.
Bootstrap support for L0PC31 as seed ortholog is 100%.

Group of orthologs #1332. Best score 72 bits
Score difference with first non-orthologous sequence - L.chalumnae:72 P.jiroveci:72

H3ABF4              	100.00%		L0PBG4              	100.00%
Bootstrap support for H3ABF4 as seed ortholog is 100%.
Bootstrap support for L0PBG4 as seed ortholog is 100%.

Group of orthologs #1333. Best score 72 bits
Score difference with first non-orthologous sequence - L.chalumnae:72 P.jiroveci:72

H3AP79              	100.00%		L0PE38              	100.00%
Bootstrap support for H3AP79 as seed ortholog is 100%.
Bootstrap support for L0PE38 as seed ortholog is 100%.

Group of orthologs #1334. Best score 72 bits
Score difference with first non-orthologous sequence - L.chalumnae:72 P.jiroveci:72

H3B004              	100.00%		L0P813              	100.00%
Bootstrap support for H3B004 as seed ortholog is 100%.
Bootstrap support for L0P813 as seed ortholog is 100%.

Group of orthologs #1335. Best score 72 bits
Score difference with first non-orthologous sequence - L.chalumnae:72 P.jiroveci:72

H3BGN8              	100.00%		L0PCB6              	100.00%
Bootstrap support for H3BGN8 as seed ortholog is 100%.
Bootstrap support for L0PCB6 as seed ortholog is 100%.

Group of orthologs #1336. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:71

H3A3M6              	100.00%		L0PBK6              	100.00%
M3XK02              	67.05%		
H3B4L5              	32.78%		
H3AZM3              	12.58%		
H3B0V4              	12.09%		
H3B9B2              	9.93%		
H2ZVK5              	6.29%		
Bootstrap support for H3A3M6 as seed ortholog is 100%.
Bootstrap support for L0PBK6 as seed ortholog is 100%.

Group of orthologs #1337. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:71

H3AJZ9              	100.00%		L0P9H6              	100.00%
Bootstrap support for H3AJZ9 as seed ortholog is 100%.
Bootstrap support for L0P9H6 as seed ortholog is 100%.

Group of orthologs #1338. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:71

H3AWR8              	100.00%		L0P9X6              	100.00%
Bootstrap support for H3AWR8 as seed ortholog is 100%.
Bootstrap support for L0P9X6 as seed ortholog is 100%.

Group of orthologs #1339. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:71

H3B2M9              	100.00%		L0PE66              	100.00%
Bootstrap support for H3B2M9 as seed ortholog is 100%.
Bootstrap support for L0PE66 as seed ortholog is 100%.

Group of orthologs #1340. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:71

H3B2U5              	100.00%		L0PFF1              	100.00%
Bootstrap support for H3B2U5 as seed ortholog is 100%.
Bootstrap support for L0PFF1 as seed ortholog is 100%.

Group of orthologs #1341. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:71

H3BD50              	100.00%		L0PEB3              	100.00%
Bootstrap support for H3BD50 as seed ortholog is 100%.
Bootstrap support for L0PEB3 as seed ortholog is 100%.

Group of orthologs #1342. Best score 71 bits
Score difference with first non-orthologous sequence - L.chalumnae:71 P.jiroveci:15

M3XJ30              	100.00%		L0PIV0              	100.00%
Bootstrap support for M3XJ30 as seed ortholog is 100%.
Bootstrap support for L0PIV0 as seed ortholog is 75%.

Group of orthologs #1343. Best score 70 bits
Score difference with first non-orthologous sequence - L.chalumnae:70 P.jiroveci:70

H2ZWW6              	100.00%		L0PEC4              	100.00%
Bootstrap support for H2ZWW6 as seed ortholog is 100%.
Bootstrap support for L0PEC4 as seed ortholog is 100%.

Group of orthologs #1344. Best score 70 bits
Score difference with first non-orthologous sequence - L.chalumnae:70 P.jiroveci:70

H3A448              	100.00%		L0P9V0              	100.00%
Bootstrap support for H3A448 as seed ortholog is 100%.
Bootstrap support for L0P9V0 as seed ortholog is 100%.

Group of orthologs #1345. Best score 70 bits
Score difference with first non-orthologous sequence - L.chalumnae:70 P.jiroveci:70

H3A934              	100.00%		L0P881              	100.00%
Bootstrap support for H3A934 as seed ortholog is 100%.
Bootstrap support for L0P881 as seed ortholog is 100%.

Group of orthologs #1346. Best score 70 bits
Score difference with first non-orthologous sequence - L.chalumnae:70 P.jiroveci:70

H3AM50              	100.00%		L0PAE3              	100.00%
Bootstrap support for H3AM50 as seed ortholog is 100%.
Bootstrap support for L0PAE3 as seed ortholog is 100%.

Group of orthologs #1347. Best score 70 bits
Score difference with first non-orthologous sequence - L.chalumnae:70 P.jiroveci:70

H3AW58              	100.00%		L0PAF5              	100.00%
Bootstrap support for H3AW58 as seed ortholog is 100%.
Bootstrap support for L0PAF5 as seed ortholog is 100%.

Group of orthologs #1348. Best score 70 bits
Score difference with first non-orthologous sequence - L.chalumnae:70 P.jiroveci:70

H3B7B0              	100.00%		L0PE16              	100.00%
Bootstrap support for H3B7B0 as seed ortholog is 100%.
Bootstrap support for L0PE16 as seed ortholog is 100%.

Group of orthologs #1349. Best score 69 bits
Score difference with first non-orthologous sequence - L.chalumnae:69 P.jiroveci:69

H3AJU2              	100.00%		L0PI79              	100.00%
H3ACY7              	49.83%		
Bootstrap support for H3AJU2 as seed ortholog is 100%.
Bootstrap support for L0PI79 as seed ortholog is 100%.

Group of orthologs #1350. Best score 69 bits
Score difference with first non-orthologous sequence - L.chalumnae:69 P.jiroveci:69

H3AQM9              	100.00%		L0PDW6              	100.00%
Bootstrap support for H3AQM9 as seed ortholog is 100%.
Bootstrap support for L0PDW6 as seed ortholog is 100%.

Group of orthologs #1351. Best score 68 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:68

M3XIM6              	100.00%		L0PF40              	100.00%
H3AZY8              	12.04%		
Bootstrap support for M3XIM6 as seed ortholog is 100%.
Bootstrap support for L0PF40 as seed ortholog is 100%.

Group of orthologs #1352. Best score 68 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:68

H3A182              	100.00%		L0P8D1              	100.00%
Bootstrap support for H3A182 as seed ortholog is 100%.
Bootstrap support for L0P8D1 as seed ortholog is 100%.

Group of orthologs #1353. Best score 68 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:68

H3AMY4              	100.00%		L0PDZ0              	100.00%
Bootstrap support for H3AMY4 as seed ortholog is 100%.
Bootstrap support for L0PDZ0 as seed ortholog is 100%.

Group of orthologs #1354. Best score 68 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:68

H3AU25              	100.00%		L0PAE2              	100.00%
Bootstrap support for H3AU25 as seed ortholog is 100%.
Bootstrap support for L0PAE2 as seed ortholog is 100%.

Group of orthologs #1355. Best score 68 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:68

H3AVJ8              	100.00%		L0PEA2              	100.00%
Bootstrap support for H3AVJ8 as seed ortholog is 100%.
Bootstrap support for L0PEA2 as seed ortholog is 100%.

Group of orthologs #1356. Best score 68 bits
Score difference with first non-orthologous sequence - L.chalumnae:68 P.jiroveci:68

H3B142              	100.00%		L0PH05              	100.00%
Bootstrap support for H3B142 as seed ortholog is 100%.
Bootstrap support for L0PH05 as seed ortholog is 100%.

Group of orthologs #1357. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:26 P.jiroveci:67

H3AKF6              	100.00%		L0PBP5              	100.00%
H3B324              	34.46%		
Bootstrap support for H3AKF6 as seed ortholog is 65%.
Alternative seed ortholog is H3B8F3 (26 bits away from this cluster)
Bootstrap support for L0PBP5 as seed ortholog is 100%.

Group of orthologs #1358. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:13 P.jiroveci:67

H3BHZ3              	100.00%		L0P9U7              	100.00%
H3AZ52              	50.96%		
Bootstrap support for H3BHZ3 as seed ortholog is 69%.
Alternative seed ortholog is H3AA05 (13 bits away from this cluster)
Bootstrap support for L0P9U7 as seed ortholog is 100%.

Group of orthologs #1359. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:67

H3AR72              	100.00%		L0PAT1              	100.00%
Bootstrap support for H3AR72 as seed ortholog is 100%.
Bootstrap support for L0PAT1 as seed ortholog is 100%.

Group of orthologs #1360. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:67

H3AV50              	100.00%		L0P745              	100.00%
Bootstrap support for H3AV50 as seed ortholog is 100%.
Bootstrap support for L0P745 as seed ortholog is 100%.

Group of orthologs #1361. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:67

H3APQ3              	100.00%		L0PGG4              	100.00%
Bootstrap support for H3APQ3 as seed ortholog is 100%.
Bootstrap support for L0PGG4 as seed ortholog is 100%.

Group of orthologs #1362. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:67

H3AXA7              	100.00%		L0PAG5              	100.00%
Bootstrap support for H3AXA7 as seed ortholog is 100%.
Bootstrap support for L0PAG5 as seed ortholog is 100%.

Group of orthologs #1363. Best score 67 bits
Score difference with first non-orthologous sequence - L.chalumnae:67 P.jiroveci:67

H3AT77              	100.00%		L0PG56              	100.00%
Bootstrap support for H3AT77 as seed ortholog is 100%.
Bootstrap support for L0PG56 as seed ortholog is 100%.

Group of orthologs #1364. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:66

H2ZW10              	100.00%		L0PC69              	100.00%
H3AI40              	6.92%		
H3A7Y2              	6.12%		
H3AGK6              	5.96%		
Bootstrap support for H2ZW10 as seed ortholog is 100%.
Bootstrap support for L0PC69 as seed ortholog is 100%.

Group of orthologs #1365. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:66

H2ZWS9              	100.00%		L0PFJ1              	100.00%
H3ATT8              	8.03%		
H3A1G3              	7.32%		
Bootstrap support for H2ZWS9 as seed ortholog is 100%.
Bootstrap support for L0PFJ1 as seed ortholog is 100%.

Group of orthologs #1366. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:66

H3ARY0              	100.00%		L0PEV7              	100.00%
H3BDM2              	67.17%		
Bootstrap support for H3ARY0 as seed ortholog is 100%.
Bootstrap support for L0PEV7 as seed ortholog is 100%.

Group of orthologs #1367. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:10

H2ZW73              	100.00%		L0PFH5              	100.00%
Bootstrap support for H2ZW73 as seed ortholog is 100%.
Bootstrap support for L0PFH5 as seed ortholog is 57%.
Alternative seed ortholog is L0P907 (10 bits away from this cluster)

Group of orthologs #1368. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:66

H3ATI4              	100.00%		L0P937              	100.00%
Bootstrap support for H3ATI4 as seed ortholog is 100%.
Bootstrap support for L0P937 as seed ortholog is 100%.

Group of orthologs #1369. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:66

H3B068              	100.00%		L0PCX8              	100.00%
Bootstrap support for H3B068 as seed ortholog is 100%.
Bootstrap support for L0PCX8 as seed ortholog is 100%.

Group of orthologs #1370. Best score 66 bits
Score difference with first non-orthologous sequence - L.chalumnae:66 P.jiroveci:6

H3BEU1              	100.00%		L0P9G4              	100.00%
Bootstrap support for H3BEU1 as seed ortholog is 100%.
Bootstrap support for L0P9G4 as seed ortholog is 28%.
Alternative seed ortholog is L0PF78 (6 bits away from this cluster)

Group of orthologs #1371. Best score 65 bits
Score difference with first non-orthologous sequence - L.chalumnae:65 P.jiroveci:65

H3A9U6              	100.00%		L0PCA9              	100.00%
Bootstrap support for H3A9U6 as seed ortholog is 100%.
Bootstrap support for L0PCA9 as seed ortholog is 100%.

Group of orthologs #1372. Best score 65 bits
Score difference with first non-orthologous sequence - L.chalumnae:65 P.jiroveci:65

H3AH57              	100.00%		L0P9A5              	100.00%
Bootstrap support for H3AH57 as seed ortholog is 100%.
Bootstrap support for L0P9A5 as seed ortholog is 100%.

Group of orthologs #1373. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:6 P.jiroveci:64

H3AD76              	100.00%		L0PA64              	100.00%
H3A829              	22.48%		
H3ASX2              	5.84%		
Bootstrap support for H3AD76 as seed ortholog is 56%.
Alternative seed ortholog is M3XH85 (6 bits away from this cluster)
Bootstrap support for L0PA64 as seed ortholog is 100%.

Group of orthologs #1374. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3AJJ2              	100.00%		L0PFS6              	100.00%
H3ALM8              	52.00%		
H3AHZ4              	12.89%		
Bootstrap support for H3AJJ2 as seed ortholog is 100%.
Bootstrap support for L0PFS6 as seed ortholog is 100%.

Group of orthologs #1375. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3AVN2              	100.00%		L0P8B9              	100.00%
H2ZUM4              	48.88%		
Bootstrap support for H3AVN2 as seed ortholog is 100%.
Bootstrap support for L0P8B9 as seed ortholog is 100%.

Group of orthologs #1376. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H2ZZD8              	100.00%		L0PBS8              	100.00%
Bootstrap support for H2ZZD8 as seed ortholog is 100%.
Bootstrap support for L0PBS8 as seed ortholog is 100%.

Group of orthologs #1377. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3AFS0              	100.00%		L0P7Q6              	100.00%
Bootstrap support for H3AFS0 as seed ortholog is 100%.
Bootstrap support for L0P7Q6 as seed ortholog is 100%.

Group of orthologs #1378. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3A9L3              	100.00%		L0PF64              	100.00%
Bootstrap support for H3A9L3 as seed ortholog is 100%.
Bootstrap support for L0PF64 as seed ortholog is 100%.

Group of orthologs #1379. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3ADY2              	100.00%		L0PCX0              	100.00%
Bootstrap support for H3ADY2 as seed ortholog is 100%.
Bootstrap support for L0PCX0 as seed ortholog is 100%.

Group of orthologs #1380. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3AAG9              	100.00%		L0PG83              	100.00%
Bootstrap support for H3AAG9 as seed ortholog is 100%.
Bootstrap support for L0PG83 as seed ortholog is 100%.

Group of orthologs #1381. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3ATT9              	100.00%		L0P994              	100.00%
Bootstrap support for H3ATT9 as seed ortholog is 100%.
Bootstrap support for L0P994 as seed ortholog is 100%.

Group of orthologs #1382. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3ATQ2              	100.00%		L0PFE5              	100.00%
Bootstrap support for H3ATQ2 as seed ortholog is 100%.
Bootstrap support for L0PFE5 as seed ortholog is 100%.

Group of orthologs #1383. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3BAK9              	100.00%		L0PBW6              	100.00%
Bootstrap support for H3BAK9 as seed ortholog is 100%.
Bootstrap support for L0PBW6 as seed ortholog is 100%.

Group of orthologs #1384. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3BFU9              	100.00%		L0PAI3              	100.00%
Bootstrap support for H3BFU9 as seed ortholog is 100%.
Bootstrap support for L0PAI3 as seed ortholog is 100%.

Group of orthologs #1385. Best score 64 bits
Score difference with first non-orthologous sequence - L.chalumnae:64 P.jiroveci:64

H3BFM9              	100.00%		L0PGU4              	100.00%
Bootstrap support for H3BFM9 as seed ortholog is 100%.
Bootstrap support for L0PGU4 as seed ortholog is 100%.

Group of orthologs #1386. Best score 63 bits
Score difference with first non-orthologous sequence - L.chalumnae:20 P.jiroveci:63

H3AHU1              	100.00%		L0PFT1              	100.00%
H3A4I0              	34.03%		
H3BH97              	33.68%		
H3B2F5              	15.62%		
M3XKQ4              	9.72%		
H3AZZ3              	8.33%		
H3A5K0              	5.56%		
Bootstrap support for H3AHU1 as seed ortholog is 78%.
Bootstrap support for L0PFT1 as seed ortholog is 100%.

Group of orthologs #1387. Best score 63 bits
Score difference with first non-orthologous sequence - L.chalumnae:63 P.jiroveci:63

H3A1M7              	100.00%		L0PFT6              	100.00%
                    	       		L0P6V3              	44.90%
Bootstrap support for H3A1M7 as seed ortholog is 100%.
Bootstrap support for L0PFT6 as seed ortholog is 100%.

Group of orthologs #1388. Best score 63 bits
Score difference with first non-orthologous sequence - L.chalumnae:63 P.jiroveci:63

H3AJQ9              	100.00%		L0PGI1              	100.00%
H3A883              	28.79%		
Bootstrap support for H3AJQ9 as seed ortholog is 100%.
Bootstrap support for L0PGI1 as seed ortholog is 100%.

Group of orthologs #1389. Best score 63 bits
Score difference with first non-orthologous sequence - L.chalumnae:63 P.jiroveci:63

H3AZ54              	100.00%		L0P9R4              	100.00%
Bootstrap support for H3AZ54 as seed ortholog is 100%.
Bootstrap support for L0P9R4 as seed ortholog is 100%.

Group of orthologs #1390. Best score 62 bits
Score difference with first non-orthologous sequence - L.chalumnae:62 P.jiroveci:62

H3AXG6              	100.00%		L0P9X8              	100.00%
H3AMI3              	19.07%		
Bootstrap support for H3AXG6 as seed ortholog is 100%.
Bootstrap support for L0P9X8 as seed ortholog is 100%.

Group of orthologs #1391. Best score 61 bits
Score difference with first non-orthologous sequence - L.chalumnae:61 P.jiroveci:61

H3ATV1              	100.00%		L0PB91              	100.00%
H3A0Q3              	24.89%		
Bootstrap support for H3ATV1 as seed ortholog is 100%.
Bootstrap support for L0PB91 as seed ortholog is 100%.

Group of orthologs #1392. Best score 60 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:60

H2ZW55              	100.00%		L0PGK4              	100.00%
Bootstrap support for H2ZW55 as seed ortholog is 100%.
Bootstrap support for L0PGK4 as seed ortholog is 100%.

Group of orthologs #1393. Best score 60 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:60

H3ASD2              	100.00%		L0PEL3              	100.00%
Bootstrap support for H3ASD2 as seed ortholog is 100%.
Bootstrap support for L0PEL3 as seed ortholog is 100%.

Group of orthologs #1394. Best score 60 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:60

H3B2W4              	100.00%		L0P9V1              	100.00%
Bootstrap support for H3B2W4 as seed ortholog is 100%.
Bootstrap support for L0P9V1 as seed ortholog is 100%.

Group of orthologs #1395. Best score 60 bits
Score difference with first non-orthologous sequence - L.chalumnae:60 P.jiroveci:60

H3B3K0              	100.00%		L0PFV5              	100.00%
Bootstrap support for H3B3K0 as seed ortholog is 100%.
Bootstrap support for L0PFV5 as seed ortholog is 100%.

Group of orthologs #1396. Best score 59 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:59

H3BBG7              	100.00%		L0P7U7              	100.00%
H3AIU6              	53.30%		
Bootstrap support for H3BBG7 as seed ortholog is 100%.
Bootstrap support for L0P7U7 as seed ortholog is 100%.

Group of orthologs #1397. Best score 59 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:59

H3A5C4              	100.00%		L0PE07              	100.00%
Bootstrap support for H3A5C4 as seed ortholog is 100%.
Bootstrap support for L0PE07 as seed ortholog is 100%.

Group of orthologs #1398. Best score 59 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:59

H3ARY5              	100.00%		L0P9P1              	100.00%
Bootstrap support for H3ARY5 as seed ortholog is 100%.
Bootstrap support for L0P9P1 as seed ortholog is 100%.

Group of orthologs #1399. Best score 59 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:59

H3B3A3              	100.00%		L0P7L1              	100.00%
Bootstrap support for H3B3A3 as seed ortholog is 100%.
Bootstrap support for L0P7L1 as seed ortholog is 100%.

Group of orthologs #1400. Best score 59 bits
Score difference with first non-orthologous sequence - L.chalumnae:59 P.jiroveci:59

H3B8C0              	100.00%		L0P7E6              	100.00%
Bootstrap support for H3B8C0 as seed ortholog is 100%.
Bootstrap support for L0P7E6 as seed ortholog is 100%.

Group of orthologs #1401. Best score 58 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:58

H3AX01              	100.00%		L0PBT4              	100.00%
H3A544              	57.18%		
H3A9P7              	57.18%		
Bootstrap support for H3AX01 as seed ortholog is 100%.
Bootstrap support for L0PBT4 as seed ortholog is 100%.

Group of orthologs #1402. Best score 58 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:58

H3B851              	100.00%		L0P8R3              	100.00%
                    	       		L0PB56              	91.09%
Bootstrap support for H3B851 as seed ortholog is 100%.
Bootstrap support for L0P8R3 as seed ortholog is 100%.

Group of orthologs #1403. Best score 58 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:58

H2ZSU7              	100.00%		L0PBB9              	100.00%
Bootstrap support for H2ZSU7 as seed ortholog is 100%.
Bootstrap support for L0PBB9 as seed ortholog is 100%.

Group of orthologs #1404. Best score 58 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:58

H3AAT5              	100.00%		L0P7T2              	100.00%
Bootstrap support for H3AAT5 as seed ortholog is 100%.
Bootstrap support for L0P7T2 as seed ortholog is 100%.

Group of orthologs #1405. Best score 58 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:58

H3AHB8              	100.00%		L0PEY1              	100.00%
Bootstrap support for H3AHB8 as seed ortholog is 100%.
Bootstrap support for L0PEY1 as seed ortholog is 100%.

Group of orthologs #1406. Best score 58 bits
Score difference with first non-orthologous sequence - L.chalumnae:58 P.jiroveci:58

M3XHQ4              	100.00%		L0P9B7              	100.00%
Bootstrap support for M3XHQ4 as seed ortholog is 100%.
Bootstrap support for L0P9B7 as seed ortholog is 100%.

Group of orthologs #1407. Best score 56 bits
Score difference with first non-orthologous sequence - L.chalumnae:56 P.jiroveci:56

H3ALY9              	100.00%		L0PB78              	100.00%
H3A940              	39.68%		
H3AAF2              	34.39%		
H3BEM2              	26.83%		
Bootstrap support for H3ALY9 as seed ortholog is 100%.
Bootstrap support for L0PB78 as seed ortholog is 100%.

Group of orthologs #1408. Best score 56 bits
Score difference with first non-orthologous sequence - L.chalumnae:56 P.jiroveci:56

H3A226              	100.00%		L0PBB5              	100.00%
H3AD42              	100.00%		
H3B5J1              	60.05%		
Bootstrap support for H3A226 as seed ortholog is 100%.
Bootstrap support for H3AD42 as seed ortholog is 100%.
Bootstrap support for L0PBB5 as seed ortholog is 100%.

Group of orthologs #1409. Best score 56 bits
Score difference with first non-orthologous sequence - L.chalumnae:11 P.jiroveci:56

H3A3Z3              	100.00%		L0PG69              	100.00%
Bootstrap support for H3A3Z3 as seed ortholog is 53%.
Alternative seed ortholog is H3B2D0 (11 bits away from this cluster)
Bootstrap support for L0PG69 as seed ortholog is 100%.

Group of orthologs #1410. Best score 56 bits
Score difference with first non-orthologous sequence - L.chalumnae:56 P.jiroveci:56

H3AM00              	100.00%		L0P8K9              	100.00%
Bootstrap support for H3AM00 as seed ortholog is 100%.
Bootstrap support for L0P8K9 as seed ortholog is 100%.

Group of orthologs #1411. Best score 55 bits
Score difference with first non-orthologous sequence - L.chalumnae:55 P.jiroveci:55

H3AMA2              	100.00%		L0PBR6              	100.00%
Bootstrap support for H3AMA2 as seed ortholog is 100%.
Bootstrap support for L0PBR6 as seed ortholog is 100%.

Group of orthologs #1412. Best score 55 bits
Score difference with first non-orthologous sequence - L.chalumnae:55 P.jiroveci:55

H3AV23              	100.00%		L0PH34              	100.00%
Bootstrap support for H3AV23 as seed ortholog is 100%.
Bootstrap support for L0PH34 as seed ortholog is 100%.

Group of orthologs #1413. Best score 54 bits
Score difference with first non-orthologous sequence - L.chalumnae:54 P.jiroveci:54

H3A0I6              	100.00%		L0PEE9              	100.00%
H3AAC6              	100.00%		
Bootstrap support for H3A0I6 as seed ortholog is 100%.
Bootstrap support for H3AAC6 as seed ortholog is 100%.
Bootstrap support for L0PEE9 as seed ortholog is 100%.

Group of orthologs #1414. Best score 54 bits
Score difference with first non-orthologous sequence - L.chalumnae:54 P.jiroveci:54

H3ALT5              	100.00%		L0PGI8              	100.00%
H3BDB2              	7.08%		
Bootstrap support for H3ALT5 as seed ortholog is 100%.
Bootstrap support for L0PGI8 as seed ortholog is 100%.

Group of orthologs #1415. Best score 54 bits
Score difference with first non-orthologous sequence - L.chalumnae:54 P.jiroveci:54

H3AFF3              	100.00%		L0PD80              	100.00%
Bootstrap support for H3AFF3 as seed ortholog is 100%.
Bootstrap support for L0PD80 as seed ortholog is 100%.

Group of orthologs #1416. Best score 53 bits
Score difference with first non-orthologous sequence - L.chalumnae:53 P.jiroveci:53

H3A824              	100.00%		L0PBP6              	100.00%
                    	       		L0PHL6              	91.74%
Bootstrap support for H3A824 as seed ortholog is 100%.
Bootstrap support for L0PBP6 as seed ortholog is 100%.

Group of orthologs #1417. Best score 53 bits
Score difference with first non-orthologous sequence - L.chalumnae:53 P.jiroveci:53

H3A5B6              	100.00%		L0PEH0              	100.00%
Bootstrap support for H3A5B6 as seed ortholog is 100%.
Bootstrap support for L0PEH0 as seed ortholog is 100%.

Group of orthologs #1418. Best score 52 bits
Score difference with first non-orthologous sequence - L.chalumnae:52 P.jiroveci:52

H3ADL4              	100.00%		L0PE23              	100.00%
M3XL18              	56.07%		
H3ABP0              	46.33%		
H3AH96              	34.58%		
H3A1K7              	17.22%		
H2ZT63              	13.35%		
Bootstrap support for H3ADL4 as seed ortholog is 100%.
Bootstrap support for L0PE23 as seed ortholog is 100%.

Group of orthologs #1419. Best score 52 bits
Score difference with first non-orthologous sequence - L.chalumnae:52 P.jiroveci:52

H3AQI3              	100.00%		L0P9W9              	100.00%
H3BET5              	54.94%		
H3AIV5              	54.70%		
Bootstrap support for H3AQI3 as seed ortholog is 100%.
Bootstrap support for L0P9W9 as seed ortholog is 100%.

Group of orthologs #1420. Best score 52 bits
Score difference with first non-orthologous sequence - L.chalumnae:52 P.jiroveci:52

H3ASP6              	100.00%		L0PHJ4              	100.00%
Bootstrap support for H3ASP6 as seed ortholog is 100%.
Bootstrap support for L0PHJ4 as seed ortholog is 100%.

Group of orthologs #1421. Best score 52 bits
Score difference with first non-orthologous sequence - L.chalumnae:7 P.jiroveci:52

H3B7D3              	100.00%		L0P8Q3              	100.00%
Bootstrap support for H3B7D3 as seed ortholog is 62%.
Alternative seed ortholog is H3B3D2 (7 bits away from this cluster)
Bootstrap support for L0P8Q3 as seed ortholog is 100%.

Group of orthologs #1422. Best score 52 bits
Score difference with first non-orthologous sequence - L.chalumnae:52 P.jiroveci:5

H3BFT4              	100.00%		L0P9T6              	100.00%
Bootstrap support for H3BFT4 as seed ortholog is 100%.
Bootstrap support for L0P9T6 as seed ortholog is 60%.
Alternative seed ortholog is L0PAW3 (5 bits away from this cluster)

Group of orthologs #1423. Best score 51 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:51

H2ZTD5              	100.00%		L0PED2              	100.00%
Bootstrap support for H2ZTD5 as seed ortholog is 100%.
Bootstrap support for L0PED2 as seed ortholog is 100%.

Group of orthologs #1424. Best score 51 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:51

H3A1X6              	100.00%		L0PAH6              	100.00%
Bootstrap support for H3A1X6 as seed ortholog is 100%.
Bootstrap support for L0PAH6 as seed ortholog is 100%.

Group of orthologs #1425. Best score 51 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:51

H3AGA9              	100.00%		L0P7X8              	100.00%
Bootstrap support for H3AGA9 as seed ortholog is 100%.
Bootstrap support for L0P7X8 as seed ortholog is 100%.

Group of orthologs #1426. Best score 51 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:51

H3AI50              	100.00%		L0PFF3              	100.00%
Bootstrap support for H3AI50 as seed ortholog is 100%.
Bootstrap support for L0PFF3 as seed ortholog is 100%.

Group of orthologs #1427. Best score 51 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:51

H3AR68              	100.00%		L0P8Q9              	100.00%
Bootstrap support for H3AR68 as seed ortholog is 100%.
Bootstrap support for L0P8Q9 as seed ortholog is 100%.

Group of orthologs #1428. Best score 51 bits
Score difference with first non-orthologous sequence - L.chalumnae:51 P.jiroveci:51

H3BH25              	100.00%		L0PDN9              	100.00%
Bootstrap support for H3BH25 as seed ortholog is 100%.
Bootstrap support for L0PDN9 as seed ortholog is 100%.

Group of orthologs #1429. Best score 50 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:50

H2ZSK4              	100.00%		L0PDY9              	100.00%
Bootstrap support for H2ZSK4 as seed ortholog is 100%.
Bootstrap support for L0PDY9 as seed ortholog is 100%.

Group of orthologs #1430. Best score 50 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:50

H2ZV02              	100.00%		L0PFC4              	100.00%
Bootstrap support for H2ZV02 as seed ortholog is 100%.
Bootstrap support for L0PFC4 as seed ortholog is 100%.

Group of orthologs #1431. Best score 50 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:50

H3A055              	100.00%		L0PF85              	100.00%
Bootstrap support for H3A055 as seed ortholog is 100%.
Bootstrap support for L0PF85 as seed ortholog is 100%.

Group of orthologs #1432. Best score 50 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:6

H3A7J9              	100.00%		L0P9V4              	100.00%
Bootstrap support for H3A7J9 as seed ortholog is 100%.
Bootstrap support for L0P9V4 as seed ortholog is 56%.
Alternative seed ortholog is L0P8G6 (6 bits away from this cluster)

Group of orthologs #1433. Best score 50 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:50

H3A9J4              	100.00%		L0PGZ4              	100.00%
Bootstrap support for H3A9J4 as seed ortholog is 100%.
Bootstrap support for L0PGZ4 as seed ortholog is 100%.

Group of orthologs #1434. Best score 50 bits
Score difference with first non-orthologous sequence - L.chalumnae:50 P.jiroveci:50

H3B7Q3              	100.00%		L0PE06              	100.00%
Bootstrap support for H3B7Q3 as seed ortholog is 100%.
Bootstrap support for L0PE06 as seed ortholog is 100%.

Group of orthologs #1435. Best score 49 bits
Score difference with first non-orthologous sequence - L.chalumnae:49 P.jiroveci:49

H2ZTJ3              	100.00%		L0P9M7              	100.00%
H3B1A6              	13.05%		
H3BCW4              	8.80%		
Bootstrap support for H2ZTJ3 as seed ortholog is 100%.
Bootstrap support for L0P9M7 as seed ortholog is 100%.

Group of orthologs #1436. Best score 49 bits
Score difference with first non-orthologous sequence - L.chalumnae:49 P.jiroveci:49

H3ALT0              	100.00%		L0PA77              	100.00%
Bootstrap support for H3ALT0 as seed ortholog is 100%.
Bootstrap support for L0PA77 as seed ortholog is 100%.

Group of orthologs #1437. Best score 49 bits
Score difference with first non-orthologous sequence - L.chalumnae:49 P.jiroveci:49

H3AHL8              	100.00%		L0PE69              	100.00%
Bootstrap support for H3AHL8 as seed ortholog is 100%.
Bootstrap support for L0PE69 as seed ortholog is 100%.

Group of orthologs #1438. Best score 48 bits
Score difference with first non-orthologous sequence - L.chalumnae:48 P.jiroveci:48

H3AL58              	100.00%		L0PHA2              	100.00%
H2ZZZ7              	35.79%		
Bootstrap support for H3AL58 as seed ortholog is 100%.
Bootstrap support for L0PHA2 as seed ortholog is 100%.

Group of orthologs #1439. Best score 48 bits
Score difference with first non-orthologous sequence - L.chalumnae:48 P.jiroveci:48

H3ANQ9              	100.00%		L0P815              	100.00%
Bootstrap support for H3ANQ9 as seed ortholog is 100%.
Bootstrap support for L0P815 as seed ortholog is 100%.

Group of orthologs #1440. Best score 48 bits
Score difference with first non-orthologous sequence - L.chalumnae:48 P.jiroveci:48

H3ATW6              	100.00%		L0PFG6              	100.00%
Bootstrap support for H3ATW6 as seed ortholog is 100%.
Bootstrap support for L0PFG6 as seed ortholog is 100%.

Group of orthologs #1441. Best score 48 bits
Score difference with first non-orthologous sequence - L.chalumnae:48 P.jiroveci:48

H3BAG0              	100.00%		L0P9A3              	100.00%
Bootstrap support for H3BAG0 as seed ortholog is 100%.
Bootstrap support for L0P9A3 as seed ortholog is 100%.

Group of orthologs #1442. Best score 47 bits
Score difference with first non-orthologous sequence - L.chalumnae:47 P.jiroveci:47

H3A9I8              	100.00%		L0PA08              	100.00%
Bootstrap support for H3A9I8 as seed ortholog is 100%.
Bootstrap support for L0PA08 as seed ortholog is 100%.

Group of orthologs #1443. Best score 47 bits
Score difference with first non-orthologous sequence - L.chalumnae:47 P.jiroveci:47

H3B7L1              	100.00%		L0PFI4              	100.00%
Bootstrap support for H3B7L1 as seed ortholog is 100%.
Bootstrap support for L0PFI4 as seed ortholog is 100%.

Group of orthologs #1444. Best score 46 bits
Score difference with first non-orthologous sequence - L.chalumnae:46 P.jiroveci:46

H3AN75              	100.00%		L0PGA3              	100.00%
Bootstrap support for H3AN75 as seed ortholog is 100%.
Bootstrap support for L0PGA3 as seed ortholog is 100%.

Group of orthologs #1445. Best score 46 bits
Score difference with first non-orthologous sequence - L.chalumnae:46 P.jiroveci:46

H3B787              	100.00%		L0PCX6              	100.00%
Bootstrap support for H3B787 as seed ortholog is 100%.
Bootstrap support for L0PCX6 as seed ortholog is 100%.

Group of orthologs #1446. Best score 45 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:45

H3AZD4              	100.00%		L0PCQ1              	100.00%
H3A8I6              	35.14%		
H3ACB9              	23.35%		
H3A760              	22.88%		
H3A5Q6              	9.43%		
Bootstrap support for H3AZD4 as seed ortholog is 100%.
Bootstrap support for L0PCQ1 as seed ortholog is 100%.

Group of orthologs #1447. Best score 45 bits
Score difference with first non-orthologous sequence - L.chalumnae:45 P.jiroveci:45

H3ANL9              	100.00%		L0PB95              	100.00%
H3AHE8              	44.38%		
Bootstrap support for H3ANL9 as seed ortholog is 100%.
Bootstrap support for L0PB95 as seed ortholog is 100%.

Group of orthologs #1448. Best score 44 bits
Score difference with first non-orthologous sequence - L.chalumnae:44 P.jiroveci:44

H3ANQ3              	100.00%		L0PD94              	100.00%
Bootstrap support for H3ANQ3 as seed ortholog is 100%.
Bootstrap support for L0PD94 as seed ortholog is 100%.

Group of orthologs #1449. Best score 44 bits
Score difference with first non-orthologous sequence - L.chalumnae:44 P.jiroveci:44

H3B0M1              	100.00%		L0PB71              	100.00%
Bootstrap support for H3B0M1 as seed ortholog is 100%.
Bootstrap support for L0PB71 as seed ortholog is 100%.

Group of orthologs #1450. Best score 43 bits
Score difference with first non-orthologous sequence - L.chalumnae:43 P.jiroveci:43

H3ATG4              	100.00%		L0P916              	100.00%
H3BE31              	48.61%		
Bootstrap support for H3ATG4 as seed ortholog is 100%.
Bootstrap support for L0P916 as seed ortholog is 100%.

Group of orthologs #1451. Best score 43 bits
Score difference with first non-orthologous sequence - L.chalumnae:43 P.jiroveci:43

H3A4S3              	100.00%		L0PDH6              	100.00%
Bootstrap support for H3A4S3 as seed ortholog is 100%.
Bootstrap support for L0PDH6 as seed ortholog is 100%.

Group of orthologs #1452. Best score 43 bits
Score difference with first non-orthologous sequence - L.chalumnae:43 P.jiroveci:43

H3AUI1              	100.00%		L0PAV1              	100.00%
Bootstrap support for H3AUI1 as seed ortholog is 100%.
Bootstrap support for L0PAV1 as seed ortholog is 100%.

Group of orthologs #1453. Best score 41 bits
Score difference with first non-orthologous sequence - L.chalumnae:41 P.jiroveci:41

H2ZZ39              	100.00%		L0PGE4              	100.00%
Bootstrap support for H2ZZ39 as seed ortholog is 100%.
Bootstrap support for L0PGE4 as seed ortholog is 100%.

Group of orthologs #1454. Best score 40 bits
Score difference with first non-orthologous sequence - L.chalumnae:40 P.jiroveci:40

H3A4D2              	100.00%		L0PBM1              	100.00%
Bootstrap support for H3A4D2 as seed ortholog is 100%.
Bootstrap support for L0PBM1 as seed ortholog is 100%.