###################################
199 groups of orthologs
250 in-paralogs from H.salinarum
218 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 650 bits
Score difference with first non-orthologous sequence - H.salinarum:650 P.jiroveci:650

P0CX02              	100.00%		L0PB90              	100.00%
Bootstrap support for P0CX02 as seed ortholog is 100%.
Bootstrap support for L0PB90 as seed ortholog is 100%.

Group of orthologs #2. Best score 594 bits
Score difference with first non-orthologous sequence - H.salinarum:594 P.jiroveci:84

Q9HRY2              	100.00%		L0PFS2              	100.00%
Bootstrap support for Q9HRY2 as seed ortholog is 100%.
Bootstrap support for L0PFS2 as seed ortholog is 95%.

Group of orthologs #3. Best score 516 bits
Score difference with first non-orthologous sequence - H.salinarum:516 P.jiroveci:396

Q9HNE3              	100.00%		L0PH89              	100.00%
Bootstrap support for Q9HNE3 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #4. Best score 514 bits
Score difference with first non-orthologous sequence - H.salinarum:514 P.jiroveci:418

Q9HMC1              	100.00%		L0PDF1              	100.00%
Bootstrap support for Q9HMC1 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #5. Best score 483 bits
Score difference with first non-orthologous sequence - H.salinarum:483 P.jiroveci:196

P0CX03              	100.00%		L0PG77              	100.00%
Bootstrap support for P0CX03 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 99%.

Group of orthologs #6. Best score 471 bits
Score difference with first non-orthologous sequence - H.salinarum:471 P.jiroveci:471

Q9HP32              	100.00%		L0PC65              	100.00%
Bootstrap support for Q9HP32 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #7. Best score 443 bits
Score difference with first non-orthologous sequence - H.salinarum:311 P.jiroveci:443

Q9HMU3              	100.00%		L0PBY6              	100.00%
Bootstrap support for Q9HMU3 as seed ortholog is 100%.
Bootstrap support for L0PBY6 as seed ortholog is 100%.

Group of orthologs #8. Best score 431 bits
Score difference with first non-orthologous sequence - H.salinarum:431 P.jiroveci:431

Q9HNS5              	100.00%		L0PET9              	100.00%
Bootstrap support for Q9HNS5 as seed ortholog is 100%.
Bootstrap support for L0PET9 as seed ortholog is 100%.

Group of orthologs #9. Best score 430 bits
Score difference with first non-orthologous sequence - H.salinarum:318 P.jiroveci:157

Q9HM89              	100.00%		L0PBA5              	100.00%
Bootstrap support for Q9HM89 as seed ortholog is 100%.
Bootstrap support for L0PBA5 as seed ortholog is 99%.

Group of orthologs #10. Best score 395 bits
Score difference with first non-orthologous sequence - H.salinarum:395 P.jiroveci:149

Q9HP27              	100.00%		L0P9U5              	100.00%
Bootstrap support for Q9HP27 as seed ortholog is 100%.
Bootstrap support for L0P9U5 as seed ortholog is 99%.

Group of orthologs #11. Best score 380 bits
Score difference with first non-orthologous sequence - H.salinarum:380 P.jiroveci:380

Q9HPR3              	100.00%		L0PFF9              	100.00%
Bootstrap support for Q9HPR3 as seed ortholog is 100%.
Bootstrap support for L0PFF9 as seed ortholog is 100%.

Group of orthologs #12. Best score 369 bits
Score difference with first non-orthologous sequence - H.salinarum:369 P.jiroveci:369

Q9HQ29              	100.00%		L0PES7              	100.00%
Bootstrap support for Q9HQ29 as seed ortholog is 100%.
Bootstrap support for L0PES7 as seed ortholog is 100%.

Group of orthologs #13. Best score 363 bits
Score difference with first non-orthologous sequence - H.salinarum:363 P.jiroveci:323

Q9HNQ2              	100.00%		L0PEP7              	100.00%
Bootstrap support for Q9HNQ2 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #14. Best score 348 bits
Score difference with first non-orthologous sequence - H.salinarum:135 P.jiroveci:348

Q9HQG7              	100.00%		L0PA23              	100.00%
Bootstrap support for Q9HQG7 as seed ortholog is 99%.
Bootstrap support for L0PA23 as seed ortholog is 100%.

Group of orthologs #15. Best score 342 bits
Score difference with first non-orthologous sequence - H.salinarum:342 P.jiroveci:342

Q9HMW7              	100.00%		L0PA45              	100.00%
Bootstrap support for Q9HMW7 as seed ortholog is 100%.
Bootstrap support for L0PA45 as seed ortholog is 100%.

Group of orthologs #16. Best score 340 bits
Score difference with first non-orthologous sequence - H.salinarum:340 P.jiroveci:231

Q9HN72              	100.00%		L0PBN1              	100.00%
Bootstrap support for Q9HN72 as seed ortholog is 100%.
Bootstrap support for L0PBN1 as seed ortholog is 99%.

Group of orthologs #17. Best score 338 bits
Score difference with first non-orthologous sequence - H.salinarum:338 P.jiroveci:2

Q9HN70              	100.00%		L0P976              	100.00%
Q9HNI0              	34.28%		
Bootstrap support for Q9HN70 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 54%.
Alternative seed ortholog is L0PG45 (2 bits away from this cluster)

Group of orthologs #18. Best score 325 bits
Score difference with first non-orthologous sequence - H.salinarum:206 P.jiroveci:191

Q9HRH2              	100.00%		L0PGH3              	100.00%
Q9HN90              	6.25%		
Q9HSN5              	5.35%		
Bootstrap support for Q9HRH2 as seed ortholog is 99%.
Bootstrap support for L0PGH3 as seed ortholog is 99%.

Group of orthologs #19. Best score 325 bits
Score difference with first non-orthologous sequence - H.salinarum:244 P.jiroveci:325

Q9HN74              	100.00%		L0P7Y5              	100.00%
Bootstrap support for Q9HN74 as seed ortholog is 100%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #20. Best score 325 bits
Score difference with first non-orthologous sequence - H.salinarum:325 P.jiroveci:35

Q9HNA5              	100.00%		L0PG32              	100.00%
Bootstrap support for Q9HNA5 as seed ortholog is 100%.
Bootstrap support for L0PG32 as seed ortholog is 75%.

Group of orthologs #21. Best score 323 bits
Score difference with first non-orthologous sequence - H.salinarum:323 P.jiroveci:75

Q9HM85              	100.00%		L0PBE4              	100.00%
Bootstrap support for Q9HM85 as seed ortholog is 100%.
Bootstrap support for L0PBE4 as seed ortholog is 93%.

Group of orthologs #22. Best score 307 bits
Score difference with first non-orthologous sequence - H.salinarum:307 P.jiroveci:186

Q9HNE4              	100.00%		L0P7M4              	100.00%
                    	       		L0PH62              	64.93%
Bootstrap support for Q9HNE4 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #23. Best score 302 bits
Score difference with first non-orthologous sequence - H.salinarum:302 P.jiroveci:302

Q9HT00              	100.00%		L0PAS8              	100.00%
Bootstrap support for Q9HT00 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #24. Best score 300 bits
Score difference with first non-orthologous sequence - H.salinarum:300 P.jiroveci:100

Q9HSM2              	100.00%		L0PIP5              	100.00%
Q9HSL6              	24.13%		
Bootstrap support for Q9HSM2 as seed ortholog is 100%.
Bootstrap support for L0PIP5 as seed ortholog is 96%.

Group of orthologs #25. Best score 297 bits
Score difference with first non-orthologous sequence - H.salinarum:297 P.jiroveci:297

Q9HPY5              	100.00%		L0PCX1              	100.00%
Bootstrap support for Q9HPY5 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #26. Best score 290 bits
Score difference with first non-orthologous sequence - H.salinarum:290 P.jiroveci:36

Q9HN97              	100.00%		L0PBQ6              	100.00%
Bootstrap support for Q9HN97 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 67%.
Alternative seed ortholog is L0PCD8 (36 bits away from this cluster)

Group of orthologs #27. Best score 289 bits
Score difference with first non-orthologous sequence - H.salinarum:289 P.jiroveci:7

Q9HS95              	100.00%		L0PGL8              	100.00%
Bootstrap support for Q9HS95 as seed ortholog is 100%.
Bootstrap support for L0PGL8 as seed ortholog is 49%.
Alternative seed ortholog is L0PBL6 (7 bits away from this cluster)

Group of orthologs #28. Best score 287 bits
Score difference with first non-orthologous sequence - H.salinarum:287 P.jiroveci:127

Q9HMG9              	100.00%		L0PDB3              	100.00%
                    	       		L0PCU4              	14.55%
Bootstrap support for Q9HMG9 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 97%.

Group of orthologs #29. Best score 280 bits
Score difference with first non-orthologous sequence - H.salinarum:280 P.jiroveci:280

Q9HPP0              	100.00%		L0PGA8              	100.00%
Bootstrap support for Q9HPP0 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #30. Best score 274 bits
Score difference with first non-orthologous sequence - H.salinarum:274 P.jiroveci:274

Q9HSQ7              	100.00%		L0P9A8              	100.00%
                    	       		L0PHB9              	100.00%
Bootstrap support for Q9HSQ7 as seed ortholog is 100%.
Bootstrap support for L0P9A8 as seed ortholog is 100%.
Bootstrap support for L0PHB9 as seed ortholog is 100%.

Group of orthologs #31. Best score 265 bits
Score difference with first non-orthologous sequence - H.salinarum:265 P.jiroveci:265

Q9HQM6              	100.00%		L0PFY1              	100.00%
Bootstrap support for Q9HQM6 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #32. Best score 259 bits
Score difference with first non-orthologous sequence - H.salinarum:259 P.jiroveci:259

Q9HN50              	100.00%		L0PDJ1              	100.00%
Bootstrap support for Q9HN50 as seed ortholog is 100%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #33. Best score 258 bits
Score difference with first non-orthologous sequence - H.salinarum:137 P.jiroveci:258

Q9HMN5              	100.00%		L0PFN9              	100.00%
                    	       		L0PEF0              	27.90%
Bootstrap support for Q9HMN5 as seed ortholog is 99%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #34. Best score 253 bits
Score difference with first non-orthologous sequence - H.salinarum:253 P.jiroveci:137

Q9HNK9              	100.00%		L0PB35              	100.00%
Bootstrap support for Q9HNK9 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 99%.

Group of orthologs #35. Best score 253 bits
Score difference with first non-orthologous sequence - H.salinarum:253 P.jiroveci:253

Q9HMF1              	100.00%		L0PFN4              	100.00%
Bootstrap support for Q9HMF1 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #36. Best score 249 bits
Score difference with first non-orthologous sequence - H.salinarum:249 P.jiroveci:249

Q9HRL9              	100.00%		L0PB96              	100.00%
Bootstrap support for Q9HRL9 as seed ortholog is 100%.
Bootstrap support for L0PB96 as seed ortholog is 100%.

Group of orthologs #37. Best score 239 bits
Score difference with first non-orthologous sequence - H.salinarum:239 P.jiroveci:239

Q9HQC2              	100.00%		L0PHL5              	100.00%
Bootstrap support for Q9HQC2 as seed ortholog is 100%.
Bootstrap support for L0PHL5 as seed ortholog is 100%.

Group of orthologs #38. Best score 238 bits
Score difference with first non-orthologous sequence - H.salinarum:238 P.jiroveci:238

Q9HQU4              	100.00%		L0P7N3              	100.00%
Bootstrap support for Q9HQU4 as seed ortholog is 100%.
Bootstrap support for L0P7N3 as seed ortholog is 100%.

Group of orthologs #39. Best score 236 bits
Score difference with first non-orthologous sequence - H.salinarum:236 P.jiroveci:236

Q9HP33              	100.00%		L0PAQ1              	100.00%
Bootstrap support for Q9HP33 as seed ortholog is 100%.
Bootstrap support for L0PAQ1 as seed ortholog is 100%.

Group of orthologs #40. Best score 236 bits
Score difference with first non-orthologous sequence - H.salinarum:236 P.jiroveci:236

Q9HSA5              	100.00%		L0PEE3              	100.00%
Bootstrap support for Q9HSA5 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #41. Best score 235 bits
Score difference with first non-orthologous sequence - H.salinarum:164 P.jiroveci:20

Q9HN27              	100.00%		L0P891              	100.00%
Bootstrap support for Q9HN27 as seed ortholog is 99%.
Bootstrap support for L0P891 as seed ortholog is 73%.
Alternative seed ortholog is L0PE19 (20 bits away from this cluster)

Group of orthologs #42. Best score 230 bits
Score difference with first non-orthologous sequence - H.salinarum:230 P.jiroveci:230

Q9HQL9              	100.00%		L0PC44              	100.00%
Bootstrap support for Q9HQL9 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #43. Best score 228 bits
Score difference with first non-orthologous sequence - H.salinarum:228 P.jiroveci:228

Q9HPX2              	100.00%		L0P9J7              	100.00%
Bootstrap support for Q9HPX2 as seed ortholog is 100%.
Bootstrap support for L0P9J7 as seed ortholog is 100%.

Group of orthologs #44. Best score 223 bits
Score difference with first non-orthologous sequence - H.salinarum:223 P.jiroveci:223

Q9HMW5              	100.00%		L0P6Z0              	100.00%
Bootstrap support for Q9HMW5 as seed ortholog is 100%.
Bootstrap support for L0P6Z0 as seed ortholog is 100%.

Group of orthologs #45. Best score 220 bits
Score difference with first non-orthologous sequence - H.salinarum:220 P.jiroveci:220

Q9HMK4              	100.00%		L0PER3              	100.00%
Bootstrap support for Q9HMK4 as seed ortholog is 100%.
Bootstrap support for L0PER3 as seed ortholog is 100%.

Group of orthologs #46. Best score 219 bits
Score difference with first non-orthologous sequence - H.salinarum:219 P.jiroveci:219

Q9HPY4              	100.00%		L0P7B5              	100.00%
Bootstrap support for Q9HPY4 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #47. Best score 217 bits
Score difference with first non-orthologous sequence - H.salinarum:217 P.jiroveci:217

Q9HHN2              	100.00%		L0PCW8              	100.00%
Bootstrap support for Q9HHN2 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #48. Best score 215 bits
Score difference with first non-orthologous sequence - H.salinarum:215 P.jiroveci:215

Q9HRM3              	100.00%		L0PDU5              	100.00%
Bootstrap support for Q9HRM3 as seed ortholog is 100%.
Bootstrap support for L0PDU5 as seed ortholog is 100%.

Group of orthologs #49. Best score 207 bits
Score difference with first non-orthologous sequence - H.salinarum:207 P.jiroveci:51

O07683              	100.00%		L0P7R1              	100.00%
Bootstrap support for O07683 as seed ortholog is 100%.
Bootstrap support for L0P7R1 as seed ortholog is 86%.

Group of orthologs #50. Best score 206 bits
Score difference with first non-orthologous sequence - H.salinarum:206 P.jiroveci:20

Q9HNJ8              	100.00%		L0P9N8              	100.00%
Bootstrap support for Q9HNJ8 as seed ortholog is 100%.
Bootstrap support for L0P9N8 as seed ortholog is 70%.
Alternative seed ortholog is L0PAU1 (20 bits away from this cluster)

Group of orthologs #51. Best score 202 bits
Score difference with first non-orthologous sequence - H.salinarum:202 P.jiroveci:17

Q9HQJ7              	100.00%		L0P9R7              	100.00%
Bootstrap support for Q9HQJ7 as seed ortholog is 100%.
Bootstrap support for L0P9R7 as seed ortholog is 77%.

Group of orthologs #52. Best score 200 bits
Score difference with first non-orthologous sequence - H.salinarum:200 P.jiroveci:70

Q9HN75              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	62.83%
Bootstrap support for Q9HN75 as seed ortholog is 100%.
Bootstrap support for L0PC17 as seed ortholog is 99%.

Group of orthologs #53. Best score 195 bits
Score difference with first non-orthologous sequence - H.salinarum:195 P.jiroveci:195

Q9HMZ1              	100.00%		L0PEY2              	100.00%
Bootstrap support for Q9HMZ1 as seed ortholog is 100%.
Bootstrap support for L0PEY2 as seed ortholog is 100%.

Group of orthologs #54. Best score 194 bits
Score difference with first non-orthologous sequence - H.salinarum:194 P.jiroveci:194

Q9HMK2              	100.00%		L0PG08              	100.00%
Bootstrap support for Q9HMK2 as seed ortholog is 100%.
Bootstrap support for L0PG08 as seed ortholog is 100%.

Group of orthologs #55. Best score 194 bits
Score difference with first non-orthologous sequence - H.salinarum:194 P.jiroveci:129

Q9HPD1              	100.00%		L0PID0              	100.00%
Bootstrap support for Q9HPD1 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 99%.

Group of orthologs #56. Best score 192 bits
Score difference with first non-orthologous sequence - H.salinarum:192 P.jiroveci:21

Q9HRY3              	100.00%		L0PGJ9              	100.00%
                    	       		L0PDD1              	7.62%
Bootstrap support for Q9HRY3 as seed ortholog is 100%.
Bootstrap support for L0PGJ9 as seed ortholog is 49%.
Alternative seed ortholog is L0PG51 (21 bits away from this cluster)

Group of orthologs #57. Best score 192 bits
Score difference with first non-orthologous sequence - H.salinarum:192 P.jiroveci:192

Q9HPR8              	100.00%		L0PEA0              	100.00%
Bootstrap support for Q9HPR8 as seed ortholog is 100%.
Bootstrap support for L0PEA0 as seed ortholog is 100%.

Group of orthologs #58. Best score 191 bits
Score difference with first non-orthologous sequence - H.salinarum:87 P.jiroveci:191

Q9HMM4              	100.00%		L0PDH7              	100.00%
                    	       		L0PFP2              	100.00%
Bootstrap support for Q9HMM4 as seed ortholog is 99%.
Bootstrap support for L0PDH7 as seed ortholog is 100%.
Bootstrap support for L0PFP2 as seed ortholog is 100%.

Group of orthologs #59. Best score 188 bits
Score difference with first non-orthologous sequence - H.salinarum:188 P.jiroveci:188

Q9HQ67              	100.00%		L0PE57              	100.00%
Bootstrap support for Q9HQ67 as seed ortholog is 100%.
Bootstrap support for L0PE57 as seed ortholog is 100%.

Group of orthologs #60. Best score 184 bits
Score difference with first non-orthologous sequence - H.salinarum:184 P.jiroveci:130

Q9HST5              	100.00%		L0PDZ2              	100.00%
Bootstrap support for Q9HST5 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #61. Best score 181 bits
Score difference with first non-orthologous sequence - H.salinarum:181 P.jiroveci:181

Q9HP42              	100.00%		L0PG02              	100.00%
Bootstrap support for Q9HP42 as seed ortholog is 100%.
Bootstrap support for L0PG02 as seed ortholog is 100%.

Group of orthologs #62. Best score 180 bits
Score difference with first non-orthologous sequence - H.salinarum:110 P.jiroveci:180

Q9HNK4              	100.00%		L0PA09              	100.00%
Bootstrap support for Q9HNK4 as seed ortholog is 99%.
Bootstrap support for L0PA09 as seed ortholog is 100%.

Group of orthologs #63. Best score 179 bits
Score difference with first non-orthologous sequence - H.salinarum:179 P.jiroveci:129

Q9HPD4              	100.00%		L0P9D4              	100.00%
Bootstrap support for Q9HPD4 as seed ortholog is 100%.
Bootstrap support for L0P9D4 as seed ortholog is 99%.

Group of orthologs #64. Best score 178 bits
Score difference with first non-orthologous sequence - H.salinarum:178 P.jiroveci:178

Q9HS93              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	64.90%
Bootstrap support for Q9HS93 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #65. Best score 176 bits
Score difference with first non-orthologous sequence - H.salinarum:176 P.jiroveci:176

Q9HNZ7              	100.00%		L0PB68              	100.00%
                    	       		L0PCQ8              	24.78%
Bootstrap support for Q9HNZ7 as seed ortholog is 100%.
Bootstrap support for L0PB68 as seed ortholog is 100%.

Group of orthologs #66. Best score 174 bits
Score difference with first non-orthologous sequence - H.salinarum:174 P.jiroveci:174

P17103              	100.00%		L0PBA8              	100.00%
Bootstrap support for P17103 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #67. Best score 173 bits
Score difference with first non-orthologous sequence - H.salinarum:173 P.jiroveci:15

P57697              	100.00%		L0PFS8              	100.00%
Bootstrap support for P57697 as seed ortholog is 100%.
Bootstrap support for L0PFS8 as seed ortholog is 71%.
Alternative seed ortholog is L0PB03 (15 bits away from this cluster)

Group of orthologs #68. Best score 171 bits
Score difference with first non-orthologous sequence - H.salinarum:171 P.jiroveci:171

Q9HMY5              	100.00%		L0P9Y7              	100.00%
Bootstrap support for Q9HMY5 as seed ortholog is 100%.
Bootstrap support for L0P9Y7 as seed ortholog is 100%.

Group of orthologs #69. Best score 166 bits
Score difference with first non-orthologous sequence - H.salinarum:166 P.jiroveci:166

Q9HPA4              	100.00%		L0P8W6              	100.00%
Bootstrap support for Q9HPA4 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #70. Best score 164 bits
Score difference with first non-orthologous sequence - H.salinarum:164 P.jiroveci:164

Q9HN76              	100.00%		L0PDT0              	100.00%
Bootstrap support for Q9HN76 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #71. Best score 163 bits
Score difference with first non-orthologous sequence - H.salinarum:163 P.jiroveci:92

Q9HSF7              	100.00%		L0PFC0              	100.00%
Q9HHK5              	70.32%		
Q9HSB3              	49.47%		
Q9HR45              	46.32%		
Q9HRE6              	44.21%		
Q9HHH8              	9.89%		
Q9HNA2              	8.84%		
Bootstrap support for Q9HSF7 as seed ortholog is 100%.
Bootstrap support for L0PFC0 as seed ortholog is 99%.

Group of orthologs #72. Best score 161 bits
Score difference with first non-orthologous sequence - H.salinarum:161 P.jiroveci:161

Q9HRV9              	100.00%		L0PDK3              	100.00%
Bootstrap support for Q9HRV9 as seed ortholog is 100%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #73. Best score 159 bits
Score difference with first non-orthologous sequence - H.salinarum:159 P.jiroveci:159

P0CX00              	100.00%		L0PHL1              	100.00%
Bootstrap support for P0CX00 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #74. Best score 159 bits
Score difference with first non-orthologous sequence - H.salinarum:159 P.jiroveci:159

Q9HSA8              	100.00%		L0PDF2              	100.00%
Bootstrap support for Q9HSA8 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #75. Best score 158 bits
Score difference with first non-orthologous sequence - H.salinarum:158 P.jiroveci:158

Q9HPJ7              	100.00%		L0PF83              	100.00%
Bootstrap support for Q9HPJ7 as seed ortholog is 100%.
Bootstrap support for L0PF83 as seed ortholog is 100%.

Group of orthologs #76. Best score 157 bits
Score difference with first non-orthologous sequence - H.salinarum:157 P.jiroveci:157

Q9HSM6              	100.00%		L0PGJ5              	100.00%
Bootstrap support for Q9HSM6 as seed ortholog is 100%.
Bootstrap support for L0PGJ5 as seed ortholog is 100%.

Group of orthologs #77. Best score 156 bits
Score difference with first non-orthologous sequence - H.salinarum:156 P.jiroveci:156

Q9HR35              	100.00%		L0PFQ5              	100.00%
Bootstrap support for Q9HR35 as seed ortholog is 100%.
Bootstrap support for L0PFQ5 as seed ortholog is 100%.

Group of orthologs #78. Best score 155 bits
Score difference with first non-orthologous sequence - H.salinarum:155 P.jiroveci:155

Q9HN62              	100.00%		L0PAH2              	100.00%
Bootstrap support for Q9HN62 as seed ortholog is 100%.
Bootstrap support for L0PAH2 as seed ortholog is 100%.

Group of orthologs #79. Best score 153 bits
Score difference with first non-orthologous sequence - H.salinarum:153 P.jiroveci:153

Q9HNY9              	100.00%		L0PFX9              	100.00%
Bootstrap support for Q9HNY9 as seed ortholog is 100%.
Bootstrap support for L0PFX9 as seed ortholog is 100%.

Group of orthologs #80. Best score 151 bits
Score difference with first non-orthologous sequence - H.salinarum:151 P.jiroveci:151

P0CX01              	100.00%		L0PFI8              	100.00%
Bootstrap support for P0CX01 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #81. Best score 151 bits
Score difference with first non-orthologous sequence - H.salinarum:151 P.jiroveci:151

Q9HQ65              	100.00%		L0PD02              	100.00%
Bootstrap support for Q9HQ65 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 100%.

Group of orthologs #82. Best score 151 bits
Score difference with first non-orthologous sequence - H.salinarum:151 P.jiroveci:151

Q9HR43              	100.00%		L0PEA1              	100.00%
Bootstrap support for Q9HR43 as seed ortholog is 100%.
Bootstrap support for L0PEA1 as seed ortholog is 100%.

Group of orthologs #83. Best score 150 bits
Score difference with first non-orthologous sequence - H.salinarum:150 P.jiroveci:150

Q9HNK0              	100.00%		L0PGR0              	100.00%
Bootstrap support for Q9HNK0 as seed ortholog is 100%.
Bootstrap support for L0PGR0 as seed ortholog is 100%.

Group of orthologs #84. Best score 149 bits
Score difference with first non-orthologous sequence - H.salinarum:75 P.jiroveci:149

Q9HSL0              	100.00%		L0PBN2              	100.00%
Bootstrap support for Q9HSL0 as seed ortholog is 98%.
Bootstrap support for L0PBN2 as seed ortholog is 100%.

Group of orthologs #85. Best score 143 bits
Score difference with first non-orthologous sequence - H.salinarum:74 P.jiroveci:143

Q9HQ43              	100.00%		L0PGL1              	100.00%
Q9HSM3              	8.14%		
Q9HQN8              	6.95%		
Bootstrap support for Q9HQ43 as seed ortholog is 93%.
Bootstrap support for L0PGL1 as seed ortholog is 100%.

Group of orthologs #86. Best score 143 bits
Score difference with first non-orthologous sequence - H.salinarum:143 P.jiroveci:143

Q9HS90              	100.00%		L0P8R6              	100.00%
Bootstrap support for Q9HS90 as seed ortholog is 100%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #87. Best score 140 bits
Score difference with first non-orthologous sequence - H.salinarum:140 P.jiroveci:140

Q9HSL2              	100.00%		L0P7H2              	100.00%
Bootstrap support for Q9HSL2 as seed ortholog is 100%.
Bootstrap support for L0P7H2 as seed ortholog is 100%.

Group of orthologs #88. Best score 140 bits
Score difference with first non-orthologous sequence - H.salinarum:140 P.jiroveci:140

Q9HPJ0              	100.00%		L0PC82              	100.00%
Bootstrap support for Q9HPJ0 as seed ortholog is 100%.
Bootstrap support for L0PC82 as seed ortholog is 100%.

Group of orthologs #89. Best score 139 bits
Score difference with first non-orthologous sequence - H.salinarum:139 P.jiroveci:33

Q9HNW6              	100.00%		L0PAA8              	100.00%
Bootstrap support for Q9HNW6 as seed ortholog is 100%.
Bootstrap support for L0PAA8 as seed ortholog is 90%.

Group of orthologs #90. Best score 137 bits
Score difference with first non-orthologous sequence - H.salinarum:137 P.jiroveci:137

Q9HSA2              	100.00%		L0PCY0              	100.00%
Bootstrap support for Q9HSA2 as seed ortholog is 100%.
Bootstrap support for L0PCY0 as seed ortholog is 100%.

Group of orthologs #91. Best score 133 bits
Score difference with first non-orthologous sequence - H.salinarum:133 P.jiroveci:133

Q9HQ08              	100.00%		L0PD55              	100.00%
Q9HMP9              	5.40%		
Bootstrap support for Q9HQ08 as seed ortholog is 100%.
Bootstrap support for L0PD55 as seed ortholog is 100%.

Group of orthologs #92. Best score 133 bits
Score difference with first non-orthologous sequence - H.salinarum:133 P.jiroveci:10

Q9HSA4              	100.00%		L0PET5              	100.00%
Bootstrap support for Q9HSA4 as seed ortholog is 100%.
Bootstrap support for L0PET5 as seed ortholog is 57%.
Alternative seed ortholog is L0PA88 (10 bits away from this cluster)

Group of orthologs #93. Best score 129 bits
Score difference with first non-orthologous sequence - H.salinarum:129 P.jiroveci:129

Q9HN33              	100.00%		L0PFR9              	100.00%
Bootstrap support for Q9HN33 as seed ortholog is 100%.
Bootstrap support for L0PFR9 as seed ortholog is 100%.

Group of orthologs #94. Best score 128 bits
Score difference with first non-orthologous sequence - H.salinarum:128 P.jiroveci:128

Q9HP68              	100.00%		L0PFS1              	100.00%
Bootstrap support for Q9HP68 as seed ortholog is 100%.
Bootstrap support for L0PFS1 as seed ortholog is 100%.

Group of orthologs #95. Best score 126 bits
Score difference with first non-orthologous sequence - H.salinarum:126 P.jiroveci:126

Q9HN24              	100.00%		L0PDQ4              	100.00%
Bootstrap support for Q9HN24 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #96. Best score 124 bits
Score difference with first non-orthologous sequence - H.salinarum:124 P.jiroveci:124

Q9HQK6              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	81.11%
Bootstrap support for Q9HQK6 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #97. Best score 123 bits
Score difference with first non-orthologous sequence - H.salinarum:123 P.jiroveci:123

P15010              	100.00%		L0PAE8              	100.00%
Bootstrap support for P15010 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #98. Best score 121 bits
Score difference with first non-orthologous sequence - H.salinarum:121 P.jiroveci:64

Q9HPA7              	100.00%		L0PEX1              	100.00%
Bootstrap support for Q9HPA7 as seed ortholog is 100%.
Bootstrap support for L0PEX1 as seed ortholog is 96%.

Group of orthologs #99. Best score 120 bits
Score difference with first non-orthologous sequence - H.salinarum:120 P.jiroveci:120

P50558              	100.00%		L0PAM2              	100.00%
Bootstrap support for P50558 as seed ortholog is 100%.
Bootstrap support for L0PAM2 as seed ortholog is 100%.

Group of orthologs #100. Best score 119 bits
Score difference with first non-orthologous sequence - H.salinarum:119 P.jiroveci:119

Q9HQH1              	100.00%		L0P8G8              	100.00%
Bootstrap support for Q9HQH1 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #101. Best score 118 bits
Score difference with first non-orthologous sequence - H.salinarum:118 P.jiroveci:118

Q9HMI4              	100.00%		L0P905              	100.00%
Bootstrap support for Q9HMI4 as seed ortholog is 100%.
Bootstrap support for L0P905 as seed ortholog is 100%.

Group of orthologs #102. Best score 118 bits
Score difference with first non-orthologous sequence - H.salinarum:118 P.jiroveci:118

Q9HQ27              	100.00%		L0PA00              	100.00%
Bootstrap support for Q9HQ27 as seed ortholog is 100%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #103. Best score 116 bits
Score difference with first non-orthologous sequence - H.salinarum:116 P.jiroveci:116

Q9HSK1              	100.00%		L0P7L7              	100.00%
Bootstrap support for Q9HSK1 as seed ortholog is 100%.
Bootstrap support for L0P7L7 as seed ortholog is 100%.

Group of orthologs #104. Best score 113 bits
Score difference with first non-orthologous sequence - H.salinarum:113 P.jiroveci:64

Q9HRZ2              	100.00%		L0P982              	100.00%
Bootstrap support for Q9HRZ2 as seed ortholog is 100%.
Bootstrap support for L0P982 as seed ortholog is 98%.

Group of orthologs #105. Best score 112 bits
Score difference with first non-orthologous sequence - H.salinarum:112 P.jiroveci:112

Q9HRJ8              	100.00%		L0PD44              	100.00%
Bootstrap support for Q9HRJ8 as seed ortholog is 100%.
Bootstrap support for L0PD44 as seed ortholog is 100%.

Group of orthologs #106. Best score 109 bits
Score difference with first non-orthologous sequence - H.salinarum:109 P.jiroveci:109

Q9HRF8              	100.00%		L0PBL5              	100.00%
Q9HR34              	9.37%		
Bootstrap support for Q9HRF8 as seed ortholog is 100%.
Bootstrap support for L0PBL5 as seed ortholog is 100%.

Group of orthologs #107. Best score 109 bits
Score difference with first non-orthologous sequence - H.salinarum:109 P.jiroveci:109

Q9HN40              	100.00%		L0PDB7              	100.00%
Bootstrap support for Q9HN40 as seed ortholog is 100%.
Bootstrap support for L0PDB7 as seed ortholog is 100%.

Group of orthologs #108. Best score 108 bits
Score difference with first non-orthologous sequence - H.salinarum:108 P.jiroveci:108

Q9HP03              	100.00%		L0PB50              	100.00%
Bootstrap support for Q9HP03 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #109. Best score 107 bits
Score difference with first non-orthologous sequence - H.salinarum:107 P.jiroveci:107

Q9HMK3              	100.00%		L0P9X7              	100.00%
Bootstrap support for Q9HMK3 as seed ortholog is 100%.
Bootstrap support for L0P9X7 as seed ortholog is 100%.

Group of orthologs #110. Best score 106 bits
Score difference with first non-orthologous sequence - H.salinarum:106 P.jiroveci:31

O52003              	100.00%		L0PBP2              	100.00%
                    	       		L0PGL4              	5.74%
Bootstrap support for O52003 as seed ortholog is 100%.
Bootstrap support for L0PBP2 as seed ortholog is 83%.

Group of orthologs #111. Best score 106 bits
Score difference with first non-orthologous sequence - H.salinarum:57 P.jiroveci:106

Q9HRQ5              	100.00%		L0P8J0              	100.00%
Bootstrap support for Q9HRQ5 as seed ortholog is 99%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #112. Best score 106 bits
Score difference with first non-orthologous sequence - H.salinarum:106 P.jiroveci:106

Q9HQG3              	100.00%		L0PFQ8              	100.00%
Bootstrap support for Q9HQG3 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #113. Best score 105 bits
Score difference with first non-orthologous sequence - H.salinarum:105 P.jiroveci:105

Q9HSS4              	100.00%		L0PAG0              	100.00%
Bootstrap support for Q9HSS4 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #114. Best score 103 bits
Score difference with first non-orthologous sequence - H.salinarum:103 P.jiroveci:103

Q9HPB9              	100.00%		L0PB66              	100.00%
Bootstrap support for Q9HPB9 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #115. Best score 103 bits
Score difference with first non-orthologous sequence - H.salinarum:103 P.jiroveci:103

Q9HMF2              	100.00%		L0PD75              	100.00%
Bootstrap support for Q9HMF2 as seed ortholog is 100%.
Bootstrap support for L0PD75 as seed ortholog is 100%.

Group of orthologs #116. Best score 102 bits
Score difference with first non-orthologous sequence - H.salinarum:102 P.jiroveci:102

Q9HMM6              	100.00%		L0P6Y2              	100.00%
Bootstrap support for Q9HMM6 as seed ortholog is 100%.
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #117. Best score 102 bits
Score difference with first non-orthologous sequence - H.salinarum:102 P.jiroveci:102

Q9HQ94              	100.00%		L0PA36              	100.00%
Bootstrap support for Q9HQ94 as seed ortholog is 100%.
Bootstrap support for L0PA36 as seed ortholog is 100%.

Group of orthologs #118. Best score 101 bits
Score difference with first non-orthologous sequence - H.salinarum:101 P.jiroveci:101

Q9HSG5              	100.00%		L0PEG2              	100.00%
Bootstrap support for Q9HSG5 as seed ortholog is 100%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #119. Best score 99 bits
Score difference with first non-orthologous sequence - H.salinarum:99 P.jiroveci:21

Q9HP11              	100.00%		L0P834              	100.00%
Q9HPV9              	8.12%		
Bootstrap support for Q9HP11 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 74%.
Alternative seed ortholog is L0PC61 (21 bits away from this cluster)

Group of orthologs #120. Best score 99 bits
Score difference with first non-orthologous sequence - H.salinarum:99 P.jiroveci:99

Q9HQ62              	100.00%		L0PGG1              	100.00%
Bootstrap support for Q9HQ62 as seed ortholog is 100%.
Bootstrap support for L0PGG1 as seed ortholog is 100%.

Group of orthologs #121. Best score 98 bits
Score difference with first non-orthologous sequence - H.salinarum:98 P.jiroveci:98

Q9HNS4              	100.00%		L0P9S1              	100.00%
Bootstrap support for Q9HNS4 as seed ortholog is 100%.
Bootstrap support for L0P9S1 as seed ortholog is 100%.

Group of orthologs #122. Best score 97 bits
Score difference with first non-orthologous sequence - H.salinarum:97 P.jiroveci:97

P57705              	100.00%		L0PBI2              	100.00%
Bootstrap support for P57705 as seed ortholog is 100%.
Bootstrap support for L0PBI2 as seed ortholog is 100%.

Group of orthologs #123. Best score 97 bits
Score difference with first non-orthologous sequence - H.salinarum:97 P.jiroveci:97

Q9HPR5              	100.00%		L0P8J2              	100.00%
Bootstrap support for Q9HPR5 as seed ortholog is 100%.
Bootstrap support for L0P8J2 as seed ortholog is 100%.

Group of orthologs #124. Best score 97 bits
Score difference with first non-orthologous sequence - H.salinarum:97 P.jiroveci:97

O24787              	100.00%		L0PCA8              	100.00%
Bootstrap support for O24787 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #125. Best score 94 bits
Score difference with first non-orthologous sequence - H.salinarum:94 P.jiroveci:94

Q9HSP7              	100.00%		L0PCK5              	100.00%
                    	       		L0PGY9              	60.30%
                    	       		L0PA98              	35.15%
                    	       		L0P826              	21.06%
Bootstrap support for Q9HSP7 as seed ortholog is 100%.
Bootstrap support for L0PCK5 as seed ortholog is 100%.

Group of orthologs #126. Best score 94 bits
Score difference with first non-orthologous sequence - H.salinarum:94 P.jiroveci:94

Q9HSZ9              	100.00%		L0PD82              	100.00%
                    	       		L0P8N0              	8.15%
Bootstrap support for Q9HSZ9 as seed ortholog is 100%.
Bootstrap support for L0PD82 as seed ortholog is 100%.

Group of orthologs #127. Best score 94 bits
Score difference with first non-orthologous sequence - H.salinarum:94 P.jiroveci:94

Q9V2W4              	100.00%		L0PE58              	100.00%
Bootstrap support for Q9V2W4 as seed ortholog is 100%.
Bootstrap support for L0PE58 as seed ortholog is 100%.

Group of orthologs #128. Best score 92 bits
Score difference with first non-orthologous sequence - H.salinarum:92 P.jiroveci:92

Q9HQ41              	100.00%		L0P903              	100.00%
Q9HNC5              	8.35%		
Bootstrap support for Q9HQ41 as seed ortholog is 100%.
Bootstrap support for L0P903 as seed ortholog is 100%.

Group of orthologs #129. Best score 92 bits
Score difference with first non-orthologous sequence - H.salinarum:92 P.jiroveci:92

Q9HNP5              	100.00%		L0PCY5              	100.00%
Bootstrap support for Q9HNP5 as seed ortholog is 100%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #130. Best score 92 bits
Score difference with first non-orthologous sequence - H.salinarum:92 P.jiroveci:92

Q9HRA2              	100.00%		L0PBS5              	100.00%
Bootstrap support for Q9HRA2 as seed ortholog is 100%.
Bootstrap support for L0PBS5 as seed ortholog is 100%.

Group of orthologs #131. Best score 91 bits
Score difference with first non-orthologous sequence - H.salinarum:91 P.jiroveci:91

P57713              	100.00%		L0P9N5              	100.00%
Bootstrap support for P57713 as seed ortholog is 100%.
Bootstrap support for L0P9N5 as seed ortholog is 100%.

Group of orthologs #132. Best score 91 bits
Score difference with first non-orthologous sequence - H.salinarum:91 P.jiroveci:91

Q9HPB6              	100.00%		L0PC18              	100.00%
Bootstrap support for Q9HPB6 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #133. Best score 91 bits
Score difference with first non-orthologous sequence - H.salinarum:91 P.jiroveci:91

P13553              	100.00%		L0PHG7              	100.00%
Bootstrap support for P13553 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 100%.

Group of orthologs #134. Best score 91 bits
Score difference with first non-orthologous sequence - H.salinarum:91 P.jiroveci:91

Q9HR56              	100.00%		L0PDW0              	100.00%
Bootstrap support for Q9HR56 as seed ortholog is 100%.
Bootstrap support for L0PDW0 as seed ortholog is 100%.

Group of orthologs #135. Best score 90 bits
Score difference with first non-orthologous sequence - H.salinarum:90 P.jiroveci:46

Q9HQI3              	100.00%		L0PAG1              	100.00%
Q9HND0              	7.51%		
Bootstrap support for Q9HQI3 as seed ortholog is 100%.
Bootstrap support for L0PAG1 as seed ortholog is 87%.

Group of orthologs #136. Best score 87 bits
Score difference with first non-orthologous sequence - H.salinarum:87 P.jiroveci:87

P50562              	100.00%		L0PA42              	100.00%
Bootstrap support for P50562 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #137. Best score 85 bits
Score difference with first non-orthologous sequence - H.salinarum:85 P.jiroveci:85

Q9HSK7              	100.00%		L0P9I6              	100.00%
Bootstrap support for Q9HSK7 as seed ortholog is 100%.
Bootstrap support for L0P9I6 as seed ortholog is 100%.

Group of orthologs #138. Best score 84 bits
Score difference with first non-orthologous sequence - H.salinarum:84 P.jiroveci:84

P09737              	100.00%		L0PD77              	100.00%
P09224              	79.54%		
Bootstrap support for P09737 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 100%.

Group of orthologs #139. Best score 84 bits
Score difference with first non-orthologous sequence - H.salinarum:84 P.jiroveci:84

P48854              	100.00%		L0P9N4              	100.00%
Bootstrap support for P48854 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #140. Best score 83 bits
Score difference with first non-orthologous sequence - H.salinarum:83 P.jiroveci:83

P61414              	100.00%		L0P7A1              	100.00%
Bootstrap support for P61414 as seed ortholog is 100%.
Bootstrap support for L0P7A1 as seed ortholog is 100%.

Group of orthologs #141. Best score 82 bits
Score difference with first non-orthologous sequence - H.salinarum:82 P.jiroveci:82

Q9HS13              	100.00%		L0PEH1              	100.00%
Q9HML8              	100.00%		L0PCR9              	100.00%
Bootstrap support for Q9HS13 as seed ortholog is 100%.
Bootstrap support for Q9HML8 as seed ortholog is 100%.
Bootstrap support for L0PEH1 as seed ortholog is 100%.
Bootstrap support for L0PCR9 as seed ortholog is 100%.

Group of orthologs #142. Best score 82 bits
Score difference with first non-orthologous sequence - H.salinarum:82 P.jiroveci:3

Q9HR36              	100.00%		L0PET2              	100.00%
                    	       		L0PAE5              	90.39%
Bootstrap support for Q9HR36 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 43%.
Alternative seed ortholog is L0PCJ2 (3 bits away from this cluster)

Group of orthologs #143. Best score 82 bits
Score difference with first non-orthologous sequence - H.salinarum:82 P.jiroveci:82

Q9HPR4              	100.00%		L0P9G9              	100.00%
Bootstrap support for Q9HPR4 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #144. Best score 82 bits
Score difference with first non-orthologous sequence - H.salinarum:82 P.jiroveci:82

P15008              	100.00%		L0PGY0              	100.00%
Bootstrap support for P15008 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #145. Best score 81 bits
Score difference with first non-orthologous sequence - H.salinarum:81 P.jiroveci:81

Q9HMT3              	100.00%		L0PBI4              	100.00%
Q9HNZ9              	32.66%		
Q9HR06              	28.93%		
Q9HHQ5              	26.90%		
Q9HMX3              	8.12%		
Q9HMW0              	7.61%		
Q9HT03              	7.28%		
Bootstrap support for Q9HMT3 as seed ortholog is 100%.
Bootstrap support for L0PBI4 as seed ortholog is 100%.

Group of orthologs #146. Best score 81 bits
Score difference with first non-orthologous sequence - H.salinarum:81 P.jiroveci:81

Q9HR27              	100.00%		L0P8V0              	100.00%
Bootstrap support for Q9HR27 as seed ortholog is 100%.
Bootstrap support for L0P8V0 as seed ortholog is 100%.

Group of orthologs #147. Best score 81 bits
Score difference with first non-orthologous sequence - H.salinarum:81 P.jiroveci:81

Q9HQE6              	100.00%		L0PHW2              	100.00%
Bootstrap support for Q9HQE6 as seed ortholog is 100%.
Bootstrap support for L0PHW2 as seed ortholog is 100%.

Group of orthologs #148. Best score 81 bits
Score difference with first non-orthologous sequence - H.salinarum:81 P.jiroveci:81

Q9HRQ4              	100.00%		L0PIV4              	100.00%
Bootstrap support for Q9HRQ4 as seed ortholog is 100%.
Bootstrap support for L0PIV4 as seed ortholog is 100%.

Group of orthologs #149. Best score 80 bits
Score difference with first non-orthologous sequence - H.salinarum:80 P.jiroveci:80

Q9HS79              	100.00%		L0PB28              	100.00%
Bootstrap support for Q9HS79 as seed ortholog is 100%.
Bootstrap support for L0PB28 as seed ortholog is 100%.

Group of orthologs #150. Best score 80 bits
Score difference with first non-orthologous sequence - H.salinarum:80 P.jiroveci:80

Q9HQJ2              	100.00%		L0PGZ5              	100.00%
Bootstrap support for Q9HQJ2 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #151. Best score 77 bits
Score difference with first non-orthologous sequence - H.salinarum:77 P.jiroveci:77

Q9HS80              	100.00%		L0P8G6              	100.00%
Bootstrap support for Q9HS80 as seed ortholog is 100%.
Bootstrap support for L0P8G6 as seed ortholog is 100%.

Group of orthologs #152. Best score 77 bits
Score difference with first non-orthologous sequence - H.salinarum:77 P.jiroveci:77

Q9HQ87              	100.00%		L0PF44              	100.00%
Bootstrap support for Q9HQ87 as seed ortholog is 100%.
Bootstrap support for L0PF44 as seed ortholog is 100%.

Group of orthologs #153. Best score 76 bits
Score difference with first non-orthologous sequence - H.salinarum:76 P.jiroveci:76

Q9HS15              	100.00%		L0PFV4              	100.00%
Bootstrap support for Q9HS15 as seed ortholog is 100%.
Bootstrap support for L0PFV4 as seed ortholog is 100%.

Group of orthologs #154. Best score 74 bits
Score difference with first non-orthologous sequence - H.salinarum:74 P.jiroveci:74

Q9HMB2              	100.00%		L0P9Q1              	100.00%
Bootstrap support for Q9HMB2 as seed ortholog is 100%.
Bootstrap support for L0P9Q1 as seed ortholog is 100%.

Group of orthologs #155. Best score 72 bits
Score difference with first non-orthologous sequence - H.salinarum:72 P.jiroveci:72

Q9HN30              	100.00%		L0PEE4              	100.00%
Q9HR19              	11.37%		
Q9HN85              	8.29%		
Bootstrap support for Q9HN30 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.

Group of orthologs #156. Best score 72 bits
Score difference with first non-orthologous sequence - H.salinarum:32 P.jiroveci:72

Q9HSR4              	100.00%		L0PD97              	100.00%
Q9HRV8              	16.47%		
Bootstrap support for Q9HSR4 as seed ortholog is 87%.
Bootstrap support for L0PD97 as seed ortholog is 100%.

Group of orthologs #157. Best score 72 bits
Score difference with first non-orthologous sequence - H.salinarum:72 P.jiroveci:72

Q9HS52              	100.00%		L0PBY9              	100.00%
Bootstrap support for Q9HS52 as seed ortholog is 100%.
Bootstrap support for L0PBY9 as seed ortholog is 100%.

Group of orthologs #158. Best score 72 bits
Score difference with first non-orthologous sequence - H.salinarum:25 P.jiroveci:72

Q9HNG2              	100.00%		L0PHP6              	100.00%
Bootstrap support for Q9HNG2 as seed ortholog is 82%.
Bootstrap support for L0PHP6 as seed ortholog is 100%.

Group of orthologs #159. Best score 71 bits
Score difference with first non-orthologous sequence - H.salinarum:71 P.jiroveci:71

Q9HPU1              	100.00%		L0P9C7              	100.00%
Q9HHW2              	64.95%		
Q9HPF0              	48.87%		
Q9HPV0              	24.61%		
Bootstrap support for Q9HPU1 as seed ortholog is 100%.
Bootstrap support for L0P9C7 as seed ortholog is 100%.

Group of orthologs #160. Best score 69 bits
Score difference with first non-orthologous sequence - H.salinarum:69 P.jiroveci:69

Q9HPG4              	100.00%		L0P9H8              	100.00%
Bootstrap support for Q9HPG4 as seed ortholog is 100%.
Bootstrap support for L0P9H8 as seed ortholog is 100%.

Group of orthologs #161. Best score 69 bits
Score difference with first non-orthologous sequence - H.salinarum:69 P.jiroveci:69

Q9HNH4              	100.00%		L0PDR3              	100.00%
Bootstrap support for Q9HNH4 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #162. Best score 69 bits
Score difference with first non-orthologous sequence - H.salinarum:69 P.jiroveci:69

Q9HQJ4              	100.00%		L0PEQ4              	100.00%
Bootstrap support for Q9HQJ4 as seed ortholog is 100%.
Bootstrap support for L0PEQ4 as seed ortholog is 100%.

Group of orthologs #163. Best score 67 bits
Score difference with first non-orthologous sequence - H.salinarum:67 P.jiroveci:67

Q9HNP2              	100.00%		L0P8H6              	100.00%
Bootstrap support for Q9HNP2 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #164. Best score 67 bits
Score difference with first non-orthologous sequence - H.salinarum:67 P.jiroveci:67

Q9HQJ1              	100.00%		L0PBK0              	100.00%
Bootstrap support for Q9HQJ1 as seed ortholog is 100%.
Bootstrap support for L0PBK0 as seed ortholog is 100%.

Group of orthologs #165. Best score 66 bits
Score difference with first non-orthologous sequence - H.salinarum:66 P.jiroveci:66

Q9HNV3              	100.00%		L0P9D6              	100.00%
Q9HML4              	5.73%		
Bootstrap support for Q9HNV3 as seed ortholog is 100%.
Bootstrap support for L0P9D6 as seed ortholog is 100%.

Group of orthologs #166. Best score 66 bits
Score difference with first non-orthologous sequence - H.salinarum:9 P.jiroveci:66

Q9HSV2              	100.00%		L0PF49              	100.00%
Q9HRP9              	10.49%		
Bootstrap support for Q9HSV2 as seed ortholog is 57%.
Alternative seed ortholog is Q9HQQ0 (9 bits away from this cluster)
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #167. Best score 65 bits
Score difference with first non-orthologous sequence - H.salinarum:65 P.jiroveci:17

P05969              	100.00%		L0PCZ5              	100.00%
Bootstrap support for P05969 as seed ortholog is 100%.
Bootstrap support for L0PCZ5 as seed ortholog is 76%.

Group of orthologs #168. Best score 65 bits
Score difference with first non-orthologous sequence - H.salinarum:65 P.jiroveci:65

Q9HRT8              	100.00%		L0PFI2              	100.00%
Bootstrap support for Q9HRT8 as seed ortholog is 100%.
Bootstrap support for L0PFI2 as seed ortholog is 100%.

Group of orthologs #169. Best score 64 bits
Score difference with first non-orthologous sequence - H.salinarum:64 P.jiroveci:64

Q9HMG6              	100.00%		L0P6Z2              	100.00%
Q9HMG1              	45.74%		
Q9HQ18              	21.41%		
Q9HHR7              	17.46%		
Q9HRJ6              	11.02%		
Q9HPH7              	9.15%		
Q9HMZ4              	8.94%		
Q9HNY3              	7.28%		
Q9HNI8              	6.65%		
Q9HMX2              	6.03%		
Q9HRZ9              	5.82%		
Bootstrap support for Q9HMG6 as seed ortholog is 100%.
Bootstrap support for L0P6Z2 as seed ortholog is 100%.

Group of orthologs #170. Best score 63 bits
Score difference with first non-orthologous sequence - H.salinarum:63 P.jiroveci:63

Q9HNK3              	100.00%		L0PD58              	100.00%
Bootstrap support for Q9HNK3 as seed ortholog is 100%.
Bootstrap support for L0PD58 as seed ortholog is 100%.

Group of orthologs #171. Best score 62 bits
Score difference with first non-orthologous sequence - H.salinarum:62 P.jiroveci:62

O46709              	100.00%		L0P9W7              	100.00%
Q9HMD0              	10.17%		
Bootstrap support for O46709 as seed ortholog is 100%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #172. Best score 61 bits
Score difference with first non-orthologous sequence - H.salinarum:61 P.jiroveci:61

Q9HQQ4              	100.00%		L0P6Q8              	100.00%
Q9HSW4              	73.82%		
Q9HSV0              	45.05%		
Q9HSZ8              	18.87%		
Bootstrap support for Q9HQQ4 as seed ortholog is 100%.
Bootstrap support for L0P6Q8 as seed ortholog is 100%.

Group of orthologs #173. Best score 60 bits
Score difference with first non-orthologous sequence - H.salinarum:60 P.jiroveci:60

Q9HMM5              	100.00%		L0PDW5              	100.00%
Bootstrap support for Q9HMM5 as seed ortholog is 100%.
Bootstrap support for L0PDW5 as seed ortholog is 100%.

Group of orthologs #174. Best score 59 bits
Score difference with first non-orthologous sequence - H.salinarum:59 P.jiroveci:59

Q9HRY0              	100.00%		L0P8K4              	100.00%
Bootstrap support for Q9HRY0 as seed ortholog is 100%.
Bootstrap support for L0P8K4 as seed ortholog is 100%.

Group of orthologs #175. Best score 59 bits
Score difference with first non-orthologous sequence - H.salinarum:59 P.jiroveci:59

Q9HRA5              	100.00%		L0PFL8              	100.00%
Bootstrap support for Q9HRA5 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #176. Best score 58 bits
Score difference with first non-orthologous sequence - H.salinarum:58 P.jiroveci:58

Q9HQJ3              	100.00%		L0P9Y2              	100.00%
Bootstrap support for Q9HQJ3 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #177. Best score 58 bits
Score difference with first non-orthologous sequence - H.salinarum:58 P.jiroveci:58

Q9HS34              	100.00%		L0P9L0              	100.00%
Bootstrap support for Q9HS34 as seed ortholog is 100%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #178. Best score 57 bits
Score difference with first non-orthologous sequence - H.salinarum:57 P.jiroveci:57

Q9HNQ6              	100.00%		L0P8P8              	100.00%
Bootstrap support for Q9HNQ6 as seed ortholog is 100%.
Bootstrap support for L0P8P8 as seed ortholog is 100%.

Group of orthologs #179. Best score 57 bits
Score difference with first non-orthologous sequence - H.salinarum:57 P.jiroveci:57

Q9HP40              	100.00%		L0P910              	100.00%
Bootstrap support for Q9HP40 as seed ortholog is 100%.
Bootstrap support for L0P910 as seed ortholog is 100%.

Group of orthologs #180. Best score 57 bits
Score difference with first non-orthologous sequence - H.salinarum:57 P.jiroveci:57

Q9HR32              	100.00%		L0P7V4              	100.00%
Bootstrap support for Q9HR32 as seed ortholog is 100%.
Bootstrap support for L0P7V4 as seed ortholog is 100%.

Group of orthologs #181. Best score 57 bits
Score difference with first non-orthologous sequence - H.salinarum:57 P.jiroveci:57

Q9HPC3              	100.00%		L0PG87              	100.00%
Bootstrap support for Q9HPC3 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #182. Best score 56 bits
Score difference with first non-orthologous sequence - H.salinarum:56 P.jiroveci:56

Q9HNP6              	100.00%		L0P949              	100.00%
Bootstrap support for Q9HNP6 as seed ortholog is 100%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #183. Best score 56 bits
Score difference with first non-orthologous sequence - H.salinarum:56 P.jiroveci:56

Q9HNF5              	100.00%		L0PBV3              	100.00%
Bootstrap support for Q9HNF5 as seed ortholog is 100%.
Bootstrap support for L0PBV3 as seed ortholog is 100%.

Group of orthologs #184. Best score 56 bits
Score difference with first non-orthologous sequence - H.salinarum:56 P.jiroveci:56

Q9HN69              	100.00%		L0PCU0              	100.00%
Bootstrap support for Q9HN69 as seed ortholog is 100%.
Bootstrap support for L0PCU0 as seed ortholog is 100%.

Group of orthologs #185. Best score 56 bits
Score difference with first non-orthologous sequence - H.salinarum:56 P.jiroveci:56

Q9HS42              	100.00%		L0PFT7              	100.00%
Bootstrap support for Q9HS42 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #186. Best score 55 bits
Score difference with first non-orthologous sequence - H.salinarum:55 P.jiroveci:55

Q9HPU3              	100.00%		L0PED5              	100.00%
Bootstrap support for Q9HPU3 as seed ortholog is 100%.
Bootstrap support for L0PED5 as seed ortholog is 100%.

Group of orthologs #187. Best score 54 bits
Score difference with first non-orthologous sequence - H.salinarum:54 P.jiroveci:54

Q9HHV6              	100.00%		L0P861              	100.00%
                    	       		L0PD03              	39.54%
Bootstrap support for Q9HHV6 as seed ortholog is 100%.
Bootstrap support for L0P861 as seed ortholog is 100%.

Group of orthologs #188. Best score 52 bits
Score difference with first non-orthologous sequence - H.salinarum:52 P.jiroveci:52

Q9HN88              	100.00%		L0PAU3              	100.00%
                    	       		L0PBF0              	27.86%
Bootstrap support for Q9HN88 as seed ortholog is 100%.
Bootstrap support for L0PAU3 as seed ortholog is 100%.

Group of orthologs #189. Best score 52 bits
Score difference with first non-orthologous sequence - H.salinarum:52 P.jiroveci:52

Q9HNL1              	100.00%		L0P7Z9              	100.00%
Bootstrap support for Q9HNL1 as seed ortholog is 100%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #190. Best score 52 bits
Score difference with first non-orthologous sequence - H.salinarum:52 P.jiroveci:52

Q9HPC2              	100.00%		L0PCG4              	100.00%
Bootstrap support for Q9HPC2 as seed ortholog is 100%.
Bootstrap support for L0PCG4 as seed ortholog is 100%.

Group of orthologs #191. Best score 51 bits
Score difference with first non-orthologous sequence - H.salinarum:51 P.jiroveci:51

Q9HQ50              	100.00%		L0P838              	100.00%
Q9HNJ2              	23.01%		
Q9HSD1              	10.62%		
Bootstrap support for Q9HQ50 as seed ortholog is 100%.
Bootstrap support for L0P838 as seed ortholog is 100%.

Group of orthologs #192. Best score 50 bits
Score difference with first non-orthologous sequence - H.salinarum:50 P.jiroveci:50

Q9HRE8              	100.00%		L0PF71              	100.00%
Bootstrap support for Q9HRE8 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #193. Best score 49 bits
Score difference with first non-orthologous sequence - H.salinarum:49 P.jiroveci:49

Q9HNT1              	100.00%		L0P7Z6              	100.00%
Q9HNT2              	5.62%		
Bootstrap support for Q9HNT1 as seed ortholog is 100%.
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #194. Best score 47 bits
Score difference with first non-orthologous sequence - H.salinarum:47 P.jiroveci:47

Q9HNF8              	100.00%		L0PE74              	100.00%
Q9HS64              	12.05%		
Bootstrap support for Q9HNF8 as seed ortholog is 100%.
Bootstrap support for L0PE74 as seed ortholog is 100%.

Group of orthologs #195. Best score 47 bits
Score difference with first non-orthologous sequence - H.salinarum:47 P.jiroveci:47

Q9HQS3              	100.00%		L0P7D7              	100.00%
Bootstrap support for Q9HQS3 as seed ortholog is 100%.
Bootstrap support for L0P7D7 as seed ortholog is 100%.

Group of orthologs #196. Best score 46 bits
Score difference with first non-orthologous sequence - H.salinarum:46 P.jiroveci:46

Q9HNA0              	100.00%		L0PDT5              	100.00%
Bootstrap support for Q9HNA0 as seed ortholog is 100%.
Bootstrap support for L0PDT5 as seed ortholog is 100%.

Group of orthologs #197. Best score 45 bits
Score difference with first non-orthologous sequence - H.salinarum:45 P.jiroveci:45

Q9HME3              	100.00%		L0PEP9              	100.00%
Bootstrap support for Q9HME3 as seed ortholog is 100%.
Bootstrap support for L0PEP9 as seed ortholog is 100%.

Group of orthologs #198. Best score 41 bits
Score difference with first non-orthologous sequence - H.salinarum:41 P.jiroveci:41

Q9HMR8              	100.00%		L0PFY9              	100.00%
Bootstrap support for Q9HMR8 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #199. Best score 41 bits
Score difference with first non-orthologous sequence - H.salinarum:41 P.jiroveci:41

Q9HRP7              	100.00%		L0PEC4              	100.00%
Bootstrap support for Q9HRP7 as seed ortholog is 100%.
Bootstrap support for L0PEC4 as seed ortholog is 100%.