###################################
1299 groups of orthologs
1763 in-paralogs from C.remanei
1376 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3567 bits
Score difference with first non-orthologous sequence - C.remanei:3567 P.jiroveci:3567

E3LT33              	100.00%		L0PCQ0              	100.00%
Bootstrap support for E3LT33 as seed ortholog is 100%.
Bootstrap support for L0PCQ0 as seed ortholog is 100%.

Group of orthologs #2. Best score 2912 bits
Score difference with first non-orthologous sequence - C.remanei:1697 P.jiroveci:2912

E3MG41              	100.00%		L0PGR1              	100.00%
Bootstrap support for E3MG41 as seed ortholog is 100%.
Bootstrap support for L0PGR1 as seed ortholog is 100%.

Group of orthologs #3. Best score 1908 bits
Score difference with first non-orthologous sequence - C.remanei:1908 P.jiroveci:1908

E3MVD4              	100.00%		L0PHB1              	100.00%
Bootstrap support for E3MVD4 as seed ortholog is 100%.
Bootstrap support for L0PHB1 as seed ortholog is 100%.

Group of orthologs #4. Best score 1900 bits
Score difference with first non-orthologous sequence - C.remanei:1900 P.jiroveci:1499

E3N5G7              	100.00%		L0PB90              	100.00%
Bootstrap support for E3N5G7 as seed ortholog is 100%.
Bootstrap support for L0PB90 as seed ortholog is 100%.

Group of orthologs #5. Best score 1683 bits
Score difference with first non-orthologous sequence - C.remanei:1683 P.jiroveci:1683

E3LRX1              	100.00%		L0PBF5              	100.00%
Bootstrap support for E3LRX1 as seed ortholog is 100%.
Bootstrap support for L0PBF5 as seed ortholog is 100%.

Group of orthologs #6. Best score 1632 bits
Score difference with first non-orthologous sequence - C.remanei:1632 P.jiroveci:1632

E3LGA7              	100.00%		L0P7C3              	100.00%
Bootstrap support for E3LGA7 as seed ortholog is 100%.
Bootstrap support for L0P7C3 as seed ortholog is 100%.

Group of orthologs #7. Best score 1325 bits
Score difference with first non-orthologous sequence - C.remanei:1325 P.jiroveci:1325

E3M709              	100.00%		L0PEL4              	100.00%
Bootstrap support for E3M709 as seed ortholog is 100%.
Bootstrap support for L0PEL4 as seed ortholog is 100%.

Group of orthologs #8. Best score 1295 bits
Score difference with first non-orthologous sequence - C.remanei:1295 P.jiroveci:1295

E3M8Z6              	100.00%		L0PGJ4              	100.00%
Bootstrap support for E3M8Z6 as seed ortholog is 100%.
Bootstrap support for L0PGJ4 as seed ortholog is 100%.

Group of orthologs #9. Best score 1287 bits
Score difference with first non-orthologous sequence - C.remanei:559 P.jiroveci:1287

E3LZ13              	100.00%		L0PG77              	100.00%
Bootstrap support for E3LZ13 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #10. Best score 1266 bits
Score difference with first non-orthologous sequence - C.remanei:1266 P.jiroveci:1266

E3LMM3              	100.00%		L0PEQ1              	100.00%
Bootstrap support for E3LMM3 as seed ortholog is 100%.
Bootstrap support for L0PEQ1 as seed ortholog is 100%.

Group of orthologs #11. Best score 1257 bits
Score difference with first non-orthologous sequence - C.remanei:1257 P.jiroveci:1257

E3N705              	100.00%		L0PG53              	100.00%
Bootstrap support for E3N705 as seed ortholog is 100%.
Bootstrap support for L0PG53 as seed ortholog is 100%.

Group of orthologs #12. Best score 1236 bits
Score difference with first non-orthologous sequence - C.remanei:1236 P.jiroveci:1236

E3MU03              	100.00%		L0PD06              	100.00%
Bootstrap support for E3MU03 as seed ortholog is 100%.
Bootstrap support for L0PD06 as seed ortholog is 100%.

Group of orthologs #13. Best score 1131 bits
Score difference with first non-orthologous sequence - C.remanei:787 P.jiroveci:748

E3M749              	100.00%		L0PB43              	100.00%
E3NUH3              	47.85%		
Bootstrap support for E3M749 as seed ortholog is 100%.
Bootstrap support for L0PB43 as seed ortholog is 100%.

Group of orthologs #14. Best score 1111 bits
Score difference with first non-orthologous sequence - C.remanei:1111 P.jiroveci:1111

E3LSK7              	100.00%		L0PBY6              	100.00%
Bootstrap support for E3LSK7 as seed ortholog is 100%.
Bootstrap support for L0PBY6 as seed ortholog is 100%.

Group of orthologs #15. Best score 1097 bits
Score difference with first non-orthologous sequence - C.remanei:264 P.jiroveci:1097

E3LH66              	100.00%		L0P818              	100.00%
Bootstrap support for E3LH66 as seed ortholog is 99%.
Bootstrap support for L0P818 as seed ortholog is 100%.

Group of orthologs #16. Best score 1064 bits
Score difference with first non-orthologous sequence - C.remanei:807 P.jiroveci:1064

E3NGZ9              	100.00%		L0PBE4              	100.00%
Bootstrap support for E3NGZ9 as seed ortholog is 100%.
Bootstrap support for L0PBE4 as seed ortholog is 100%.

Group of orthologs #17. Best score 1055 bits
Score difference with first non-orthologous sequence - C.remanei:1055 P.jiroveci:1055

E3N4R9              	100.00%		L0PCR2              	100.00%
Bootstrap support for E3N4R9 as seed ortholog is 100%.
Bootstrap support for L0PCR2 as seed ortholog is 100%.

Group of orthologs #18. Best score 1050 bits
Score difference with first non-orthologous sequence - C.remanei:388 P.jiroveci:1050

E3MCE8              	100.00%		L0PGI2              	100.00%
Bootstrap support for E3MCE8 as seed ortholog is 100%.
Bootstrap support for L0PGI2 as seed ortholog is 100%.

Group of orthologs #19. Best score 977 bits
Score difference with first non-orthologous sequence - C.remanei:294 P.jiroveci:457

E3LS32              	100.00%		L0PB13              	100.00%
Bootstrap support for E3LS32 as seed ortholog is 100%.
Bootstrap support for L0PB13 as seed ortholog is 100%.

Group of orthologs #20. Best score 963 bits
Score difference with first non-orthologous sequence - C.remanei:796 P.jiroveci:963

E3MNY3              	100.00%		L0PFN4              	100.00%
Bootstrap support for E3MNY3 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #21. Best score 958 bits
Score difference with first non-orthologous sequence - C.remanei:671 P.jiroveci:958

E3LPX5              	100.00%		L0PDK3              	100.00%
Bootstrap support for E3LPX5 as seed ortholog is 100%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #22. Best score 952 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:742

E3MK06              	100.00%		L0PEK6              	100.00%
Bootstrap support for E3MK06 as seed ortholog is 99%.
Bootstrap support for L0PEK6 as seed ortholog is 100%.

Group of orthologs #23. Best score 928 bits
Score difference with first non-orthologous sequence - C.remanei:152 P.jiroveci:385

E3LRK3              	100.00%		L0PAJ7              	100.00%
Bootstrap support for E3LRK3 as seed ortholog is 99%.
Bootstrap support for L0PAJ7 as seed ortholog is 100%.

Group of orthologs #24. Best score 918 bits
Score difference with first non-orthologous sequence - C.remanei:918 P.jiroveci:918

E3LRC8              	100.00%		L0P7P6              	100.00%
Bootstrap support for E3LRC8 as seed ortholog is 100%.
Bootstrap support for L0P7P6 as seed ortholog is 100%.

Group of orthologs #25. Best score 908 bits
Score difference with first non-orthologous sequence - C.remanei:908 P.jiroveci:908

E3LMD7              	100.00%		L0P928              	100.00%
Bootstrap support for E3LMD7 as seed ortholog is 100%.
Bootstrap support for L0P928 as seed ortholog is 100%.

Group of orthologs #26. Best score 908 bits
Score difference with first non-orthologous sequence - C.remanei:524 P.jiroveci:801

E3MFH1              	100.00%		L0PAG9              	100.00%
Bootstrap support for E3MFH1 as seed ortholog is 100%.
Bootstrap support for L0PAG9 as seed ortholog is 100%.

Group of orthologs #27. Best score 903 bits
Score difference with first non-orthologous sequence - C.remanei:292 P.jiroveci:903

E3MNB7              	100.00%		L0PAW9              	100.00%
                    	       		L0PBZ0              	70.11%
Bootstrap support for E3MNB7 as seed ortholog is 100%.
Bootstrap support for L0PAW9 as seed ortholog is 100%.

Group of orthologs #28. Best score 899 bits
Score difference with first non-orthologous sequence - C.remanei:374 P.jiroveci:320

E3M8W9              	100.00%		L0PDB3              	100.00%
Bootstrap support for E3M8W9 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 99%.

Group of orthologs #29. Best score 887 bits
Score difference with first non-orthologous sequence - C.remanei:303 P.jiroveci:887

E3M299              	100.00%		L0PDI4              	100.00%
E3NCM7              	10.25%		
E3LQ24              	9.06%		
E3MFC9              	8.36%		
E3LZI9              	8.11%		
E3NE23              	6.72%		
E3MRN1              	5.32%		
Bootstrap support for E3M299 as seed ortholog is 100%.
Bootstrap support for L0PDI4 as seed ortholog is 100%.

Group of orthologs #30. Best score 881 bits
Score difference with first non-orthologous sequence - C.remanei:881 P.jiroveci:881

E3LKD1              	100.00%		L0PFU4              	100.00%
Bootstrap support for E3LKD1 as seed ortholog is 100%.
Bootstrap support for L0PFU4 as seed ortholog is 100%.

Group of orthologs #31. Best score 863 bits
Score difference with first non-orthologous sequence - C.remanei:222 P.jiroveci:344

E3LZ05              	100.00%		L0PFC8              	100.00%
Bootstrap support for E3LZ05 as seed ortholog is 100%.
Bootstrap support for L0PFC8 as seed ortholog is 100%.

Group of orthologs #32. Best score 861 bits
Score difference with first non-orthologous sequence - C.remanei:341 P.jiroveci:861

E3MLX0              	100.00%		L0PEW0              	100.00%
E3NSP2              	70.59%		
Bootstrap support for E3MLX0 as seed ortholog is 100%.
Bootstrap support for L0PEW0 as seed ortholog is 100%.

Group of orthologs #33. Best score 855 bits
Score difference with first non-orthologous sequence - C.remanei:275 P.jiroveci:855

E3M641              	100.00%		L0PGR4              	100.00%
                    	       		L0PFQ2              	92.02%
Bootstrap support for E3M641 as seed ortholog is 99%.
Bootstrap support for L0PGR4 as seed ortholog is 100%.

Group of orthologs #34. Best score 852 bits
Score difference with first non-orthologous sequence - C.remanei:852 P.jiroveci:852

E3N6K8              	100.00%		L0P915              	100.00%
E3N6M1              	13.15%		
E3N6M0              	8.72%		
Bootstrap support for E3N6K8 as seed ortholog is 100%.
Bootstrap support for L0P915 as seed ortholog is 100%.

Group of orthologs #35. Best score 849 bits
Score difference with first non-orthologous sequence - C.remanei:489 P.jiroveci:849

E3MFI3              	100.00%		L0P9P7              	100.00%
Bootstrap support for E3MFI3 as seed ortholog is 100%.
Bootstrap support for L0P9P7 as seed ortholog is 100%.

Group of orthologs #36. Best score 842 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:647

E3LDQ5              	100.00%		L0PFV0              	100.00%
E3LQD8              	34.74%		
Bootstrap support for E3LDQ5 as seed ortholog is 99%.
Bootstrap support for L0PFV0 as seed ortholog is 100%.

Group of orthologs #37. Best score 834 bits
Score difference with first non-orthologous sequence - C.remanei:834 P.jiroveci:834

E3LMT9              	100.00%		L0PCG8              	100.00%
Bootstrap support for E3LMT9 as seed ortholog is 100%.
Bootstrap support for L0PCG8 as seed ortholog is 100%.

Group of orthologs #38. Best score 833 bits
Score difference with first non-orthologous sequence - C.remanei:492 P.jiroveci:531

E3LYE2              	100.00%		L0PCW9              	100.00%
Bootstrap support for E3LYE2 as seed ortholog is 100%.
Bootstrap support for L0PCW9 as seed ortholog is 100%.

Group of orthologs #39. Best score 825 bits
Score difference with first non-orthologous sequence - C.remanei:177 P.jiroveci:667

E3LK16              	100.00%		L0PFS2              	100.00%
Bootstrap support for E3LK16 as seed ortholog is 99%.
Bootstrap support for L0PFS2 as seed ortholog is 100%.

Group of orthologs #40. Best score 808 bits
Score difference with first non-orthologous sequence - C.remanei:808 P.jiroveci:808

E3ND69              	100.00%		L0P7V0              	100.00%
E3NS05              	14.62%		
Bootstrap support for E3ND69 as seed ortholog is 100%.
Bootstrap support for L0P7V0 as seed ortholog is 100%.

Group of orthologs #41. Best score 806 bits
Score difference with first non-orthologous sequence - C.remanei:806 P.jiroveci:806

E3MUE2              	100.00%		L0P9H4              	100.00%
E3LMQ6              	49.22%		
Bootstrap support for E3MUE2 as seed ortholog is 100%.
Bootstrap support for L0P9H4 as seed ortholog is 100%.

Group of orthologs #42. Best score 801 bits
Score difference with first non-orthologous sequence - C.remanei:801 P.jiroveci:801

E3MHZ4              	100.00%		L0PG12              	100.00%
Bootstrap support for E3MHZ4 as seed ortholog is 100%.
Bootstrap support for L0PG12 as seed ortholog is 100%.

Group of orthologs #43. Best score 800 bits
Score difference with first non-orthologous sequence - C.remanei:800 P.jiroveci:800

E3NL46              	100.00%		L0PCK0              	100.00%
E3MLZ3              	98.38%		L0P7U1              	99.19%
Bootstrap support for E3NL46 as seed ortholog is 100%.
Bootstrap support for L0PCK0 as seed ortholog is 100%.

Group of orthologs #44. Best score 789 bits
Score difference with first non-orthologous sequence - C.remanei:789 P.jiroveci:789

E3LTL3              	100.00%		L0PH89              	100.00%
Bootstrap support for E3LTL3 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #45. Best score 788 bits
Score difference with first non-orthologous sequence - C.remanei:318 P.jiroveci:788

E3MGG7              	100.00%		L0PDQ4              	100.00%
Bootstrap support for E3MGG7 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #46. Best score 784 bits
Score difference with first non-orthologous sequence - C.remanei:218 P.jiroveci:721

E3N309              	100.00%		L0PG61              	100.00%
Bootstrap support for E3N309 as seed ortholog is 99%.
Bootstrap support for L0PG61 as seed ortholog is 100%.

Group of orthologs #47. Best score 780 bits
Score difference with first non-orthologous sequence - C.remanei:780 P.jiroveci:780

E3LU34              	100.00%		L0PAV3              	100.00%
E3M9Y0              	82.23%		
Bootstrap support for E3LU34 as seed ortholog is 100%.
Bootstrap support for L0PAV3 as seed ortholog is 100%.

Group of orthologs #48. Best score 772 bits
Score difference with first non-orthologous sequence - C.remanei:772 P.jiroveci:772

E3LQ13              	100.00%		L0PFF9              	100.00%
Bootstrap support for E3LQ13 as seed ortholog is 100%.
Bootstrap support for L0PFF9 as seed ortholog is 100%.

Group of orthologs #49. Best score 761 bits
Score difference with first non-orthologous sequence - C.remanei:662 P.jiroveci:761

E3MFZ5              	100.00%		L0PDF1              	100.00%
Bootstrap support for E3MFZ5 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #50. Best score 758 bits
Score difference with first non-orthologous sequence - C.remanei:758 P.jiroveci:329

E3M5Q3              	100.00%		L0PEL5              	100.00%
E3MV39              	83.27%		L0PGC2              	50.23%
E3M7Q2              	55.55%		
E3LEJ9              	14.27%		
Bootstrap support for E3M5Q3 as seed ortholog is 100%.
Bootstrap support for L0PEL5 as seed ortholog is 99%.

Group of orthologs #51. Best score 748 bits
Score difference with first non-orthologous sequence - C.remanei:748 P.jiroveci:748

E3MID2              	100.00%		L0P7X5              	100.00%
Bootstrap support for E3MID2 as seed ortholog is 100%.
Bootstrap support for L0P7X5 as seed ortholog is 100%.

Group of orthologs #52. Best score 743 bits
Score difference with first non-orthologous sequence - C.remanei:743 P.jiroveci:295

E3N1I3              	100.00%		L0P833              	100.00%
Bootstrap support for E3N1I3 as seed ortholog is 100%.
Bootstrap support for L0P833 as seed ortholog is 100%.

Group of orthologs #53. Best score 739 bits
Score difference with first non-orthologous sequence - C.remanei:739 P.jiroveci:407

E3LFX3              	100.00%		L0P9U5              	100.00%
Bootstrap support for E3LFX3 as seed ortholog is 100%.
Bootstrap support for L0P9U5 as seed ortholog is 100%.

Group of orthologs #54. Best score 738 bits
Score difference with first non-orthologous sequence - C.remanei:555 P.jiroveci:738

E3MSM2              	100.00%		L0PD55              	100.00%
Bootstrap support for E3MSM2 as seed ortholog is 100%.
Bootstrap support for L0PD55 as seed ortholog is 100%.

Group of orthologs #55. Best score 737 bits
Score difference with first non-orthologous sequence - C.remanei:601 P.jiroveci:737

E3LCC5              	100.00%		L0PBA5              	100.00%
E3MCI0              	100.00%		
Bootstrap support for E3LCC5 as seed ortholog is 100%.
Bootstrap support for E3MCI0 as seed ortholog is 100%.
Bootstrap support for L0PBA5 as seed ortholog is 100%.

Group of orthologs #56. Best score 730 bits
Score difference with first non-orthologous sequence - C.remanei:382 P.jiroveci:730

E3MAW7              	100.00%		L0PBR4              	100.00%
E3LCJ3              	52.43%		
E3M8D5              	48.06%		
E3LZH1              	44.66%		
Bootstrap support for E3MAW7 as seed ortholog is 100%.
Bootstrap support for L0PBR4 as seed ortholog is 100%.

Group of orthologs #57. Best score 729 bits
Score difference with first non-orthologous sequence - C.remanei:729 P.jiroveci:729

E3LHJ0              	100.00%		L0PAQ3              	100.00%
Bootstrap support for E3LHJ0 as seed ortholog is 100%.
Bootstrap support for L0PAQ3 as seed ortholog is 100%.

Group of orthologs #58. Best score 729 bits
Score difference with first non-orthologous sequence - C.remanei:503 P.jiroveci:348

E3LWK6              	100.00%		L0PB83              	100.00%
Bootstrap support for E3LWK6 as seed ortholog is 100%.
Bootstrap support for L0PB83 as seed ortholog is 100%.

Group of orthologs #59. Best score 724 bits
Score difference with first non-orthologous sequence - C.remanei:724 P.jiroveci:724

E3LWS3              	100.00%		L0PFJ0              	100.00%
Bootstrap support for E3LWS3 as seed ortholog is 100%.
Bootstrap support for L0PFJ0 as seed ortholog is 100%.

Group of orthologs #60. Best score 716 bits
Score difference with first non-orthologous sequence - C.remanei:660 P.jiroveci:716

E3LUJ1              	100.00%		L0P7V1              	100.00%
Bootstrap support for E3LUJ1 as seed ortholog is 100%.
Bootstrap support for L0P7V1 as seed ortholog is 100%.

Group of orthologs #61. Best score 688 bits
Score difference with first non-orthologous sequence - C.remanei:688 P.jiroveci:688

E3LF53              	100.00%		L0PAS8              	100.00%
Bootstrap support for E3LF53 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #62. Best score 688 bits
Score difference with first non-orthologous sequence - C.remanei:688 P.jiroveci:688

E3LVH1              	100.00%		L0PC54              	100.00%
Bootstrap support for E3LVH1 as seed ortholog is 100%.
Bootstrap support for L0PC54 as seed ortholog is 100%.

Group of orthologs #63. Best score 686 bits
Score difference with first non-orthologous sequence - C.remanei:686 P.jiroveci:686

E3N2S4              	100.00%		L0PA62              	100.00%
Bootstrap support for E3N2S4 as seed ortholog is 100%.
Bootstrap support for L0PA62 as seed ortholog is 100%.

Group of orthologs #64. Best score 681 bits
Score difference with first non-orthologous sequence - C.remanei:135 P.jiroveci:305

E3MTR9              	100.00%		L0PA91              	100.00%
Q4TTR3              	97.50%		
E3MTR8              	96.25%		
E3LE95              	50.00%		
E3LYI9              	46.25%		
E3MTR6              	7.50%		
E3MTS3              	7.50%		
Bootstrap support for E3MTR9 as seed ortholog is 100%.
Bootstrap support for L0PA91 as seed ortholog is 100%.

Group of orthologs #65. Best score 680 bits
Score difference with first non-orthologous sequence - C.remanei:680 P.jiroveci:680

E3LKH8              	100.00%		L0P7K0              	100.00%
Bootstrap support for E3LKH8 as seed ortholog is 100%.
Bootstrap support for L0P7K0 as seed ortholog is 100%.

Group of orthologs #66. Best score 680 bits
Score difference with first non-orthologous sequence - C.remanei:680 P.jiroveci:680

E3M0W8              	100.00%		L0P9R9              	100.00%
Bootstrap support for E3M0W8 as seed ortholog is 100%.
Bootstrap support for L0P9R9 as seed ortholog is 100%.

Group of orthologs #67. Best score 679 bits
Score difference with first non-orthologous sequence - C.remanei:150 P.jiroveci:570

E3LZG8              	100.00%		L0PAC9              	100.00%
Bootstrap support for E3LZG8 as seed ortholog is 67%.
Alternative seed ortholog is E3NIK9 (150 bits away from this cluster)
Bootstrap support for L0PAC9 as seed ortholog is 100%.

Group of orthologs #68. Best score 678 bits
Score difference with first non-orthologous sequence - C.remanei:678 P.jiroveci:678

E3MF82              	100.00%		L0PAN4              	100.00%
Bootstrap support for E3MF82 as seed ortholog is 100%.
Bootstrap support for L0PAN4 as seed ortholog is 100%.

Group of orthologs #69. Best score 676 bits
Score difference with first non-orthologous sequence - C.remanei:676 P.jiroveci:676

E3LFF7              	100.00%		L0P971              	100.00%
Bootstrap support for E3LFF7 as seed ortholog is 100%.
Bootstrap support for L0P971 as seed ortholog is 100%.

Group of orthologs #70. Best score 670 bits
Score difference with first non-orthologous sequence - C.remanei:441 P.jiroveci:670

E3MCY6              	100.00%		L0PGA5              	100.00%
Bootstrap support for E3MCY6 as seed ortholog is 100%.
Bootstrap support for L0PGA5 as seed ortholog is 100%.

Group of orthologs #71. Best score 667 bits
Score difference with first non-orthologous sequence - C.remanei:368 P.jiroveci:390

E3LF07              	100.00%		L0PBP8              	100.00%
Bootstrap support for E3LF07 as seed ortholog is 100%.
Bootstrap support for L0PBP8 as seed ortholog is 100%.

Group of orthologs #72. Best score 664 bits
Score difference with first non-orthologous sequence - C.remanei:459 P.jiroveci:664

E3LGS9              	100.00%		L0P945              	100.00%
Bootstrap support for E3LGS9 as seed ortholog is 100%.
Bootstrap support for L0P945 as seed ortholog is 100%.

Group of orthologs #73. Best score 661 bits
Score difference with first non-orthologous sequence - C.remanei:661 P.jiroveci:661

E3MMY7              	100.00%		L0P710              	100.00%
Bootstrap support for E3MMY7 as seed ortholog is 100%.
Bootstrap support for L0P710 as seed ortholog is 100%.

Group of orthologs #74. Best score 658 bits
Score difference with first non-orthologous sequence - C.remanei:658 P.jiroveci:658

E3M907              	100.00%		L0PEU6              	100.00%
E3LQY2              	49.11%		
Bootstrap support for E3M907 as seed ortholog is 100%.
Bootstrap support for L0PEU6 as seed ortholog is 100%.

Group of orthologs #75. Best score 658 bits
Score difference with first non-orthologous sequence - C.remanei:577 P.jiroveci:494

E3M5G5              	100.00%		L0PBQ6              	100.00%
Bootstrap support for E3M5G5 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 100%.

Group of orthologs #76. Best score 644 bits
Score difference with first non-orthologous sequence - C.remanei:644 P.jiroveci:644

E3LMQ8              	100.00%		L0PEK9              	100.00%
Bootstrap support for E3LMQ8 as seed ortholog is 100%.
Bootstrap support for L0PEK9 as seed ortholog is 100%.

Group of orthologs #77. Best score 644 bits
Score difference with first non-orthologous sequence - C.remanei:530 P.jiroveci:644

E3MI71              	100.00%		L0PC93              	100.00%
Bootstrap support for E3MI71 as seed ortholog is 100%.
Bootstrap support for L0PC93 as seed ortholog is 100%.

Group of orthologs #78. Best score 641 bits
Score difference with first non-orthologous sequence - C.remanei:447 P.jiroveci:641

E3MAC6              	100.00%		L0PG19              	100.00%
E3MHD0              	19.14%		
Bootstrap support for E3MAC6 as seed ortholog is 100%.
Bootstrap support for L0PG19 as seed ortholog is 100%.

Group of orthologs #79. Best score 639 bits
Score difference with first non-orthologous sequence - C.remanei:639 P.jiroveci:639

E3MQ05              	100.00%		L0PDF3              	100.00%
Bootstrap support for E3MQ05 as seed ortholog is 100%.
Bootstrap support for L0PDF3 as seed ortholog is 100%.

Group of orthologs #80. Best score 634 bits
Score difference with first non-orthologous sequence - C.remanei:146 P.jiroveci:634

E3NKU6              	100.00%		L0PGU1              	100.00%
Bootstrap support for E3NKU6 as seed ortholog is 99%.
Bootstrap support for L0PGU1 as seed ortholog is 100%.

Group of orthologs #81. Best score 629 bits
Score difference with first non-orthologous sequence - C.remanei:629 P.jiroveci:629

E3MII3              	100.00%		L0PC43              	100.00%
                    	       		L0PCW3              	49.47%
Bootstrap support for E3MII3 as seed ortholog is 100%.
Bootstrap support for L0PC43 as seed ortholog is 100%.

Group of orthologs #82. Best score 629 bits
Score difference with first non-orthologous sequence - C.remanei:459 P.jiroveci:629

E3LG26              	100.00%		L0PER6              	100.00%
Bootstrap support for E3LG26 as seed ortholog is 100%.
Bootstrap support for L0PER6 as seed ortholog is 100%.

Group of orthologs #83. Best score 627 bits
Score difference with first non-orthologous sequence - C.remanei:627 P.jiroveci:627

E3ML13              	100.00%		L0PG32              	100.00%
Bootstrap support for E3ML13 as seed ortholog is 100%.
Bootstrap support for L0PG32 as seed ortholog is 100%.

Group of orthologs #84. Best score 624 bits
Score difference with first non-orthologous sequence - C.remanei:624 P.jiroveci:624

E3N3U9              	100.00%		L0P773              	100.00%
Bootstrap support for E3N3U9 as seed ortholog is 100%.
Bootstrap support for L0P773 as seed ortholog is 100%.

Group of orthologs #85. Best score 619 bits
Score difference with first non-orthologous sequence - C.remanei:619 P.jiroveci:558

E3MI08              	100.00%		L0PBD7              	100.00%
Bootstrap support for E3MI08 as seed ortholog is 100%.
Bootstrap support for L0PBD7 as seed ortholog is 100%.

Group of orthologs #86. Best score 618 bits
Score difference with first non-orthologous sequence - C.remanei:618 P.jiroveci:501

E3MFG3              	100.00%		L0P8C8              	100.00%
E3NK36              	68.04%		
E3NX15              	47.58%		
E3NTK0              	41.64%		
E3NEL5              	38.81%		
E3NTG1              	37.63%		
E3MZ07              	37.17%		
E3NDN3              	30.50%		
Bootstrap support for E3MFG3 as seed ortholog is 100%.
Bootstrap support for L0P8C8 as seed ortholog is 100%.

Group of orthologs #87. Best score 618 bits
Score difference with first non-orthologous sequence - C.remanei:618 P.jiroveci:618

E3MM32              	100.00%		L0P8M6              	100.00%
Bootstrap support for E3MM32 as seed ortholog is 100%.
Bootstrap support for L0P8M6 as seed ortholog is 100%.

Group of orthologs #88. Best score 618 bits
Score difference with first non-orthologous sequence - C.remanei:618 P.jiroveci:618

E3NCJ2              	100.00%		L0PBV5              	100.00%
Bootstrap support for E3NCJ2 as seed ortholog is 100%.
Bootstrap support for L0PBV5 as seed ortholog is 100%.

Group of orthologs #89. Best score 617 bits
Score difference with first non-orthologous sequence - C.remanei:205 P.jiroveci:617

E3M296              	100.00%		L0PEQ8              	100.00%
Bootstrap support for E3M296 as seed ortholog is 99%.
Bootstrap support for L0PEQ8 as seed ortholog is 100%.

Group of orthologs #90. Best score 616 bits
Score difference with first non-orthologous sequence - C.remanei:616 P.jiroveci:311

E3LQL8              	100.00%		L0PFG7              	100.00%
Bootstrap support for E3LQL8 as seed ortholog is 100%.
Bootstrap support for L0PFG7 as seed ortholog is 100%.

Group of orthologs #91. Best score 614 bits
Score difference with first non-orthologous sequence - C.remanei:554 P.jiroveci:614

E3MNJ4              	100.00%		L0PDM6              	100.00%
Bootstrap support for E3MNJ4 as seed ortholog is 100%.
Bootstrap support for L0PDM6 as seed ortholog is 100%.

Group of orthologs #92. Best score 613 bits
Score difference with first non-orthologous sequence - C.remanei:272 P.jiroveci:613

E3N077              	100.00%		L0PC79              	100.00%
E3M6T1              	20.43%		
E3LF96              	19.93%		
E3MLV8              	14.60%		
Bootstrap support for E3N077 as seed ortholog is 100%.
Bootstrap support for L0PC79 as seed ortholog is 100%.

Group of orthologs #93. Best score 610 bits
Score difference with first non-orthologous sequence - C.remanei:610 P.jiroveci:610

E3NHT5              	100.00%		L0P9S1              	100.00%
Bootstrap support for E3NHT5 as seed ortholog is 100%.
Bootstrap support for L0P9S1 as seed ortholog is 100%.

Group of orthologs #94. Best score 609 bits
Score difference with first non-orthologous sequence - C.remanei:609 P.jiroveci:609

E3LMU2              	100.00%		L0PDJ1              	100.00%
Bootstrap support for E3LMU2 as seed ortholog is 100%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #95. Best score 608 bits
Score difference with first non-orthologous sequence - C.remanei:608 P.jiroveci:608

E3LCV1              	100.00%		L0PBY5              	100.00%
Bootstrap support for E3LCV1 as seed ortholog is 100%.
Bootstrap support for L0PBY5 as seed ortholog is 100%.

Group of orthologs #96. Best score 607 bits
Score difference with first non-orthologous sequence - C.remanei:389 P.jiroveci:607

E3LLI7              	100.00%		L0PG45              	100.00%
Bootstrap support for E3LLI7 as seed ortholog is 100%.
Bootstrap support for L0PG45 as seed ortholog is 100%.

Group of orthologs #97. Best score 604 bits
Score difference with first non-orthologous sequence - C.remanei:342 P.jiroveci:413

E3LYU2              	100.00%		L0PCT0              	100.00%
Bootstrap support for E3LYU2 as seed ortholog is 100%.
Bootstrap support for L0PCT0 as seed ortholog is 100%.

Group of orthologs #98. Best score 600 bits
Score difference with first non-orthologous sequence - C.remanei:600 P.jiroveci:600

E3LF38              	100.00%		L0PFL5              	100.00%
Bootstrap support for E3LF38 as seed ortholog is 100%.
Bootstrap support for L0PFL5 as seed ortholog is 100%.

Group of orthologs #99. Best score 598 bits
Score difference with first non-orthologous sequence - C.remanei:598 P.jiroveci:598

E3MG50              	100.00%		L0PDK6              	100.00%
E3LF48              	40.84%		
Bootstrap support for E3MG50 as seed ortholog is 100%.
Bootstrap support for L0PDK6 as seed ortholog is 100%.

Group of orthologs #100. Best score 598 bits
Score difference with first non-orthologous sequence - C.remanei:598 P.jiroveci:598

E3MAV5              	100.00%		L0P8G2              	100.00%
Bootstrap support for E3MAV5 as seed ortholog is 100%.
Bootstrap support for L0P8G2 as seed ortholog is 100%.

Group of orthologs #101. Best score 598 bits
Score difference with first non-orthologous sequence - C.remanei:408 P.jiroveci:598

E3MZI8              	100.00%		L0P976              	100.00%
Bootstrap support for E3MZI8 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 100%.

Group of orthologs #102. Best score 597 bits
Score difference with first non-orthologous sequence - C.remanei:317 P.jiroveci:191

E3LVU5              	100.00%		L0PE26              	100.00%
Bootstrap support for E3LVU5 as seed ortholog is 100%.
Bootstrap support for L0PE26 as seed ortholog is 99%.

Group of orthologs #103. Best score 587 bits
Score difference with first non-orthologous sequence - C.remanei:288 P.jiroveci:326

E3MWG6              	100.00%		L0P853              	100.00%
                    	       		L0P8M8              	56.12%
Bootstrap support for E3MWG6 as seed ortholog is 100%.
Bootstrap support for L0P853 as seed ortholog is 100%.

Group of orthologs #104. Best score 585 bits
Score difference with first non-orthologous sequence - C.remanei:294 P.jiroveci:279

E3N2N6              	100.00%		L0P8L4              	100.00%
Bootstrap support for E3N2N6 as seed ortholog is 99%.
Bootstrap support for L0P8L4 as seed ortholog is 100%.

Group of orthologs #105. Best score 583 bits
Score difference with first non-orthologous sequence - C.remanei:27 P.jiroveci:203

E3NH27              	100.00%		L0PBH4              	100.00%
Bootstrap support for E3NH27 as seed ortholog is 79%.
Bootstrap support for L0PBH4 as seed ortholog is 100%.

Group of orthologs #106. Best score 582 bits
Score difference with first non-orthologous sequence - C.remanei:582 P.jiroveci:582

E3M577              	100.00%		L0PHB7              	100.00%
Bootstrap support for E3M577 as seed ortholog is 100%.
Bootstrap support for L0PHB7 as seed ortholog is 100%.

Group of orthologs #107. Best score 579 bits
Score difference with first non-orthologous sequence - C.remanei:579 P.jiroveci:579

E3LJV3              	100.00%		L0PB98              	100.00%
Bootstrap support for E3LJV3 as seed ortholog is 100%.
Bootstrap support for L0PB98 as seed ortholog is 100%.

Group of orthologs #108. Best score 579 bits
Score difference with first non-orthologous sequence - C.remanei:579 P.jiroveci:579

E3MFA6              	100.00%		L0PGT9              	100.00%
Bootstrap support for E3MFA6 as seed ortholog is 100%.
Bootstrap support for L0PGT9 as seed ortholog is 100%.

Group of orthologs #109. Best score 576 bits
Score difference with first non-orthologous sequence - C.remanei:576 P.jiroveci:576

E3NBU6              	100.00%		L0PB85              	100.00%
Bootstrap support for E3NBU6 as seed ortholog is 100%.
Bootstrap support for L0PB85 as seed ortholog is 100%.

Group of orthologs #110. Best score 573 bits
Score difference with first non-orthologous sequence - C.remanei:305 P.jiroveci:321

E3MM86              	100.00%		L0PFW1              	100.00%
E3NDB1              	43.58%		
Bootstrap support for E3MM86 as seed ortholog is 100%.
Bootstrap support for L0PFW1 as seed ortholog is 100%.

Group of orthologs #111. Best score 569 bits
Score difference with first non-orthologous sequence - C.remanei:394 P.jiroveci:569

E3MCH4              	100.00%		L0PB96              	100.00%
E3LWZ9              	77.43%		
Bootstrap support for E3MCH4 as seed ortholog is 100%.
Bootstrap support for L0PB96 as seed ortholog is 100%.

Group of orthologs #112. Best score 568 bits
Score difference with first non-orthologous sequence - C.remanei:134 P.jiroveci:469

E3MVI3              	100.00%		L0PIF0              	100.00%
E3MLW7              	8.46%		
Bootstrap support for E3MVI3 as seed ortholog is 98%.
Bootstrap support for L0PIF0 as seed ortholog is 100%.

Group of orthologs #113. Best score 566 bits
Score difference with first non-orthologous sequence - C.remanei:416 P.jiroveci:566

E3LYU1              	100.00%		L0PGS4              	100.00%
Bootstrap support for E3LYU1 as seed ortholog is 100%.
Bootstrap support for L0PGS4 as seed ortholog is 100%.

Group of orthologs #114. Best score 564 bits
Score difference with first non-orthologous sequence - C.remanei:252 P.jiroveci:347

E3LVX2              	100.00%		L0P8E7              	100.00%
Bootstrap support for E3LVX2 as seed ortholog is 100%.
Bootstrap support for L0P8E7 as seed ortholog is 100%.

Group of orthologs #115. Best score 560 bits
Score difference with first non-orthologous sequence - C.remanei:560 P.jiroveci:560

E3M506              	100.00%		L0PBN0              	100.00%
E3NMJ8              	79.47%		
Bootstrap support for E3M506 as seed ortholog is 100%.
Bootstrap support for L0PBN0 as seed ortholog is 100%.

Group of orthologs #116. Best score 559 bits
Score difference with first non-orthologous sequence - C.remanei:559 P.jiroveci:559

E3NGE6              	100.00%		L0PDI6              	100.00%
E3NQY3              	60.73%		
Bootstrap support for E3NGE6 as seed ortholog is 100%.
Bootstrap support for L0PDI6 as seed ortholog is 100%.

Group of orthologs #117. Best score 558 bits
Score difference with first non-orthologous sequence - C.remanei:105 P.jiroveci:57

E3MFF7              	100.00%		L0PC64              	100.00%
E3LY66              	89.61%		
Bootstrap support for E3MFF7 as seed ortholog is 99%.
Bootstrap support for L0PC64 as seed ortholog is 97%.

Group of orthologs #118. Best score 556 bits
Score difference with first non-orthologous sequence - C.remanei:556 P.jiroveci:556

E3M3H8              	100.00%		L0PD31              	100.00%
Bootstrap support for E3M3H8 as seed ortholog is 100%.
Bootstrap support for L0PD31 as seed ortholog is 100%.

Group of orthologs #119. Best score 554 bits
Score difference with first non-orthologous sequence - C.remanei:554 P.jiroveci:554

E3NM67              	100.00%		L0PCV7              	100.00%
E3MY78              	10.41%		
Bootstrap support for E3NM67 as seed ortholog is 100%.
Bootstrap support for L0PCV7 as seed ortholog is 100%.

Group of orthologs #120. Best score 553 bits
Score difference with first non-orthologous sequence - C.remanei:371 P.jiroveci:553

E3N1J1              	100.00%		L0PA75              	100.00%
E3LVH3              	23.57%		
Bootstrap support for E3N1J1 as seed ortholog is 100%.
Bootstrap support for L0PA75 as seed ortholog is 100%.

Group of orthologs #121. Best score 551 bits
Score difference with first non-orthologous sequence - C.remanei:551 P.jiroveci:551

E3LXB7              	100.00%		L0PBF3              	100.00%
Bootstrap support for E3LXB7 as seed ortholog is 100%.
Bootstrap support for L0PBF3 as seed ortholog is 100%.

Group of orthologs #122. Best score 547 bits
Score difference with first non-orthologous sequence - C.remanei:218 P.jiroveci:454

E3NP24              	100.00%		L0P7L0              	100.00%
                    	       		L0PCI7              	46.12%
Bootstrap support for E3NP24 as seed ortholog is 100%.
Bootstrap support for L0P7L0 as seed ortholog is 100%.

Group of orthologs #123. Best score 547 bits
Score difference with first non-orthologous sequence - C.remanei:97 P.jiroveci:12

E3NQB2              	100.00%		L0P9J9              	100.00%
E3MR02              	99.16%		
Bootstrap support for E3NQB2 as seed ortholog is 91%.
Bootstrap support for L0P9J9 as seed ortholog is 56%.
Alternative seed ortholog is L0PF72 (12 bits away from this cluster)

Group of orthologs #124. Best score 546 bits
Score difference with first non-orthologous sequence - C.remanei:546 P.jiroveci:546

E3M911              	100.00%		L0P8P8              	100.00%
Bootstrap support for E3M911 as seed ortholog is 100%.
Bootstrap support for L0P8P8 as seed ortholog is 100%.

Group of orthologs #125. Best score 545 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:545

E3MWG9              	100.00%		L0PES7              	100.00%
Bootstrap support for E3MWG9 as seed ortholog is 100%.
Bootstrap support for L0PES7 as seed ortholog is 100%.

Group of orthologs #126. Best score 539 bits
Score difference with first non-orthologous sequence - C.remanei:352 P.jiroveci:473

E3M810              	100.00%		L0PCS2              	100.00%
Bootstrap support for E3M810 as seed ortholog is 100%.
Bootstrap support for L0PCS2 as seed ortholog is 100%.

Group of orthologs #127. Best score 538 bits
Score difference with first non-orthologous sequence - C.remanei:538 P.jiroveci:538

E3LJ75              	100.00%		L0PC65              	100.00%
E3MY85              	48.91%		
Bootstrap support for E3LJ75 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #128. Best score 538 bits
Score difference with first non-orthologous sequence - C.remanei:358 P.jiroveci:538

E3N753              	100.00%		L0P7Y5              	100.00%
Bootstrap support for E3N753 as seed ortholog is 100%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #129. Best score 537 bits
Score difference with first non-orthologous sequence - C.remanei:537 P.jiroveci:537

E3M8H0              	100.00%		L0P9D4              	100.00%
Bootstrap support for E3M8H0 as seed ortholog is 100%.
Bootstrap support for L0P9D4 as seed ortholog is 100%.

Group of orthologs #130. Best score 536 bits
Score difference with first non-orthologous sequence - C.remanei:536 P.jiroveci:536

E3LZH4              	100.00%		L0P8W6              	100.00%
Bootstrap support for E3LZH4 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #131. Best score 536 bits
Score difference with first non-orthologous sequence - C.remanei:536 P.jiroveci:536

E3MTZ6              	100.00%		L0PG37              	100.00%
Bootstrap support for E3MTZ6 as seed ortholog is 100%.
Bootstrap support for L0PG37 as seed ortholog is 100%.

Group of orthologs #132. Best score 535 bits
Score difference with first non-orthologous sequence - C.remanei:535 P.jiroveci:535

E3NHE9              	100.00%		L0PA45              	100.00%
E3NAC9              	76.19%		
Bootstrap support for E3NHE9 as seed ortholog is 100%.
Bootstrap support for L0PA45 as seed ortholog is 100%.

Group of orthologs #133. Best score 534 bits
Score difference with first non-orthologous sequence - C.remanei:534 P.jiroveci:534

E3LFH0              	100.00%		L0PBJ1              	100.00%
Bootstrap support for E3LFH0 as seed ortholog is 100%.
Bootstrap support for L0PBJ1 as seed ortholog is 100%.

Group of orthologs #134. Best score 533 bits
Score difference with first non-orthologous sequence - C.remanei:533 P.jiroveci:533

E3LDD9              	100.00%		L0PE57              	100.00%
Bootstrap support for E3LDD9 as seed ortholog is 100%.
Bootstrap support for L0PE57 as seed ortholog is 100%.

Group of orthologs #135. Best score 529 bits
Score difference with first non-orthologous sequence - C.remanei:529 P.jiroveci:529

E3LWQ4              	100.00%		L0PCC4              	100.00%
Bootstrap support for E3LWQ4 as seed ortholog is 100%.
Bootstrap support for L0PCC4 as seed ortholog is 100%.

Group of orthologs #136. Best score 529 bits
Score difference with first non-orthologous sequence - C.remanei:529 P.jiroveci:529

E3LWY9              	100.00%		L0PCX1              	100.00%
Bootstrap support for E3LWY9 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #137. Best score 526 bits
Score difference with first non-orthologous sequence - C.remanei:526 P.jiroveci:526

E3LKW3              	100.00%		L0PG07              	100.00%
E3LKS8              	34.95%		
Bootstrap support for E3LKW3 as seed ortholog is 100%.
Bootstrap support for L0PG07 as seed ortholog is 100%.

Group of orthologs #138. Best score 524 bits
Score difference with first non-orthologous sequence - C.remanei:187 P.jiroveci:165

E3MSR9              	100.00%		L0P7D9              	100.00%
E3NTI5              	80.22%		
Bootstrap support for E3MSR9 as seed ortholog is 100%.
Bootstrap support for L0P7D9 as seed ortholog is 100%.

Group of orthologs #139. Best score 523 bits
Score difference with first non-orthologous sequence - C.remanei:523 P.jiroveci:523

E3LRW7              	100.00%		L0PDR3              	100.00%
Bootstrap support for E3LRW7 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #140. Best score 522 bits
Score difference with first non-orthologous sequence - C.remanei:522 P.jiroveci:522

E3LN33              	100.00%		L0P7T0              	100.00%
Bootstrap support for E3LN33 as seed ortholog is 100%.
Bootstrap support for L0P7T0 as seed ortholog is 100%.

Group of orthologs #141. Best score 521 bits
Score difference with first non-orthologous sequence - C.remanei:521 P.jiroveci:521

E3LRH7              	100.00%		L0PA85              	100.00%
Bootstrap support for E3LRH7 as seed ortholog is 100%.
Bootstrap support for L0PA85 as seed ortholog is 100%.

Group of orthologs #142. Best score 519 bits
Score difference with first non-orthologous sequence - C.remanei:194 P.jiroveci:519

E3LYN1              	100.00%		L0P9A8              	100.00%
                    	       		L0PHB9              	100.00%
Bootstrap support for E3LYN1 as seed ortholog is 99%.
Bootstrap support for L0P9A8 as seed ortholog is 100%.
Bootstrap support for L0PHB9 as seed ortholog is 100%.

Group of orthologs #143. Best score 514 bits
Score difference with first non-orthologous sequence - C.remanei:514 P.jiroveci:514

E3LYN3              	100.00%		L0PG27              	100.00%
Bootstrap support for E3LYN3 as seed ortholog is 100%.
Bootstrap support for L0PG27 as seed ortholog is 100%.

Group of orthologs #144. Best score 513 bits
Score difference with first non-orthologous sequence - C.remanei:513 P.jiroveci:513

E3NP95              	100.00%		L0PEP7              	100.00%
Bootstrap support for E3NP95 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #145. Best score 512 bits
Score difference with first non-orthologous sequence - C.remanei:512 P.jiroveci:512

E3LG56              	100.00%		L0P917              	100.00%
                    	       		L0PF20              	86.99%
Bootstrap support for E3LG56 as seed ortholog is 100%.
Bootstrap support for L0P917 as seed ortholog is 100%.

Group of orthologs #146. Best score 510 bits
Score difference with first non-orthologous sequence - C.remanei:172 P.jiroveci:315

E3LRW0              	100.00%		L0PDY0              	100.00%
E3MYG7              	12.22%		
Bootstrap support for E3LRW0 as seed ortholog is 99%.
Bootstrap support for L0PDY0 as seed ortholog is 100%.

Group of orthologs #147. Best score 510 bits
Score difference with first non-orthologous sequence - C.remanei:510 P.jiroveci:510

E3LS69              	100.00%		L0P6X8              	100.00%
Bootstrap support for E3LS69 as seed ortholog is 100%.
Bootstrap support for L0P6X8 as seed ortholog is 100%.

Group of orthologs #148. Best score 509 bits
Score difference with first non-orthologous sequence - C.remanei:509 P.jiroveci:509

E3LH00              	100.00%		L0PCP1              	100.00%
Bootstrap support for E3LH00 as seed ortholog is 100%.
Bootstrap support for L0PCP1 as seed ortholog is 100%.

Group of orthologs #149. Best score 508 bits
Score difference with first non-orthologous sequence - C.remanei:236 P.jiroveci:180

E3N712              	100.00%		L0PEK2              	100.00%
Bootstrap support for E3N712 as seed ortholog is 99%.
Bootstrap support for L0PEK2 as seed ortholog is 99%.

Group of orthologs #150. Best score 506 bits
Score difference with first non-orthologous sequence - C.remanei:506 P.jiroveci:506

E3N5S1              	100.00%		L0P7R6              	100.00%
E3NPU4              	81.07%		L0PHF8              	84.80%
Bootstrap support for E3N5S1 as seed ortholog is 100%.
Bootstrap support for L0P7R6 as seed ortholog is 100%.

Group of orthologs #151. Best score 504 bits
Score difference with first non-orthologous sequence - C.remanei:504 P.jiroveci:504

E3MJV3              	100.00%		L0PBR9              	100.00%
E3MJV2              	82.05%		
Bootstrap support for E3MJV3 as seed ortholog is 100%.
Bootstrap support for L0PBR9 as seed ortholog is 100%.

Group of orthologs #152. Best score 502 bits
Score difference with first non-orthologous sequence - C.remanei:502 P.jiroveci:502

E3LRV2              	100.00%		L0P9I8              	100.00%
Bootstrap support for E3LRV2 as seed ortholog is 100%.
Bootstrap support for L0P9I8 as seed ortholog is 100%.

Group of orthologs #153. Best score 500 bits
Score difference with first non-orthologous sequence - C.remanei:500 P.jiroveci:500

E3NBV4              	100.00%		L0PEL0              	100.00%
Bootstrap support for E3NBV4 as seed ortholog is 100%.
Bootstrap support for L0PEL0 as seed ortholog is 100%.

Group of orthologs #154. Best score 498 bits
Score difference with first non-orthologous sequence - C.remanei:285 P.jiroveci:498

E3N6I7              	100.00%		L0P905              	100.00%
E3MMF2              	36.53%		
E3LSW3              	35.63%		
E3MB30              	28.17%		
E3MAA6              	26.38%		
E3LWK4              	23.86%		
E3N1J9              	17.00%		
E3MAA4              	7.10%		
Bootstrap support for E3N6I7 as seed ortholog is 99%.
Bootstrap support for L0P905 as seed ortholog is 100%.

Group of orthologs #155. Best score 498 bits
Score difference with first non-orthologous sequence - C.remanei:328 P.jiroveci:498

E3LMP4              	100.00%		L0P6Y2              	100.00%
Bootstrap support for E3LMP4 as seed ortholog is 100%.
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #156. Best score 498 bits
Score difference with first non-orthologous sequence - C.remanei:409 P.jiroveci:498

E3LZ42              	100.00%		L0PB97              	100.00%
Bootstrap support for E3LZ42 as seed ortholog is 100%.
Bootstrap support for L0PB97 as seed ortholog is 100%.

Group of orthologs #157. Best score 496 bits
Score difference with first non-orthologous sequence - C.remanei:496 P.jiroveci:496

E3LM51              	100.00%		L0PC44              	100.00%
Bootstrap support for E3LM51 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #158. Best score 496 bits
Score difference with first non-orthologous sequence - C.remanei:496 P.jiroveci:496

E3LRC6              	100.00%		L0PBW3              	100.00%
Bootstrap support for E3LRC6 as seed ortholog is 100%.
Bootstrap support for L0PBW3 as seed ortholog is 100%.

Group of orthologs #159. Best score 495 bits
Score difference with first non-orthologous sequence - C.remanei:167 P.jiroveci:133

E3LDM4              	100.00%		L0P6T3              	100.00%
E3LXN7              	25.90%		
Bootstrap support for E3LDM4 as seed ortholog is 99%.
Bootstrap support for L0P6T3 as seed ortholog is 99%.

Group of orthologs #160. Best score 492 bits
Score difference with first non-orthologous sequence - C.remanei:317 P.jiroveci:279

E3M5L2              	100.00%		L0PF08              	100.00%
Bootstrap support for E3M5L2 as seed ortholog is 100%.
Bootstrap support for L0PF08 as seed ortholog is 100%.

Group of orthologs #161. Best score 487 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:160

E3MNE9              	100.00%		L0PCK5              	100.00%
E3MUH8              	29.05%		
E3LYT3              	26.23%		
E3LNB1              	13.03%		
Bootstrap support for E3MNE9 as seed ortholog is 99%.
Bootstrap support for L0PCK5 as seed ortholog is 100%.

Group of orthologs #162. Best score 487 bits
Score difference with first non-orthologous sequence - C.remanei:366 P.jiroveci:366

E3LMP5              	100.00%		L0PE30              	100.00%
Bootstrap support for E3LMP5 as seed ortholog is 100%.
Bootstrap support for L0PE30 as seed ortholog is 100%.

Group of orthologs #163. Best score 487 bits
Score difference with first non-orthologous sequence - C.remanei:487 P.jiroveci:313

E3NDD3              	100.00%		L0PFN9              	100.00%
Bootstrap support for E3NDD3 as seed ortholog is 100%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #164. Best score 486 bits
Score difference with first non-orthologous sequence - C.remanei:486 P.jiroveci:486

E3MIG9              	100.00%		L0P958              	100.00%
Bootstrap support for E3MIG9 as seed ortholog is 100%.
Bootstrap support for L0P958 as seed ortholog is 100%.

Group of orthologs #165. Best score 483 bits
Score difference with first non-orthologous sequence - C.remanei:427 P.jiroveci:483

E3LW33              	100.00%		L0P802              	100.00%
E3MDY8              	28.17%		
Bootstrap support for E3LW33 as seed ortholog is 100%.
Bootstrap support for L0P802 as seed ortholog is 100%.

Group of orthologs #166. Best score 483 bits
Score difference with first non-orthologous sequence - C.remanei:483 P.jiroveci:483

E3LSF1              	100.00%		L0P7R1              	100.00%
Bootstrap support for E3LSF1 as seed ortholog is 100%.
Bootstrap support for L0P7R1 as seed ortholog is 100%.

Group of orthologs #167. Best score 480 bits
Score difference with first non-orthologous sequence - C.remanei:119 P.jiroveci:480

E3LZC4              	100.00%		L0PBN5              	100.00%
E3MPT1              	40.92%		
E3MUK7              	18.90%		
Bootstrap support for E3LZC4 as seed ortholog is 97%.
Bootstrap support for L0PBN5 as seed ortholog is 100%.

Group of orthologs #168. Best score 473 bits
Score difference with first non-orthologous sequence - C.remanei:384 P.jiroveci:389

E3N790              	100.00%		L0PDG5              	100.00%
Bootstrap support for E3N790 as seed ortholog is 100%.
Bootstrap support for L0PDG5 as seed ortholog is 100%.

Group of orthologs #169. Best score 468 bits
Score difference with first non-orthologous sequence - C.remanei:338 P.jiroveci:385

E3NC63              	100.00%		L0PG55              	100.00%
Bootstrap support for E3NC63 as seed ortholog is 100%.
Bootstrap support for L0PG55 as seed ortholog is 100%.

Group of orthologs #170. Best score 468 bits
Score difference with first non-orthologous sequence - C.remanei:187 P.jiroveci:468

E3NIY1              	100.00%		L0PC37              	100.00%
Bootstrap support for E3NIY1 as seed ortholog is 99%.
Bootstrap support for L0PC37 as seed ortholog is 100%.

Group of orthologs #171. Best score 467 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:467

E3M6A3              	100.00%		L0PB12              	100.00%
Bootstrap support for E3M6A3 as seed ortholog is 100%.
Bootstrap support for L0PB12 as seed ortholog is 100%.

Group of orthologs #172. Best score 460 bits
Score difference with first non-orthologous sequence - C.remanei:460 P.jiroveci:460

E3MY43              	100.00%		L0PDC9              	100.00%
Bootstrap support for E3MY43 as seed ortholog is 100%.
Bootstrap support for L0PDC9 as seed ortholog is 100%.

Group of orthologs #173. Best score 457 bits
Score difference with first non-orthologous sequence - C.remanei:335 P.jiroveci:457

E3MTQ0              	100.00%		L0P7N1              	100.00%
Bootstrap support for E3MTQ0 as seed ortholog is 100%.
Bootstrap support for L0P7N1 as seed ortholog is 100%.

Group of orthologs #174. Best score 456 bits
Score difference with first non-orthologous sequence - C.remanei:456 P.jiroveci:456

E3M4E1              	100.00%		L0PFZ9              	100.00%
Bootstrap support for E3M4E1 as seed ortholog is 100%.
Bootstrap support for L0PFZ9 as seed ortholog is 100%.

Group of orthologs #175. Best score 455 bits
Score difference with first non-orthologous sequence - C.remanei:225 P.jiroveci:231

E3LEU3              	100.00%		L0PB67              	100.00%
Bootstrap support for E3LEU3 as seed ortholog is 100%.
Bootstrap support for L0PB67 as seed ortholog is 100%.

Group of orthologs #176. Best score 455 bits
Score difference with first non-orthologous sequence - C.remanei:455 P.jiroveci:455

E3M315              	100.00%		L0P8F1              	100.00%
Bootstrap support for E3M315 as seed ortholog is 100%.
Bootstrap support for L0P8F1 as seed ortholog is 100%.

Group of orthologs #177. Best score 454 bits
Score difference with first non-orthologous sequence - C.remanei:454 P.jiroveci:320

E3NHM1              	100.00%		L0PDG3              	100.00%
Bootstrap support for E3NHM1 as seed ortholog is 100%.
Bootstrap support for L0PDG3 as seed ortholog is 100%.

Group of orthologs #178. Best score 452 bits
Score difference with first non-orthologous sequence - C.remanei:452 P.jiroveci:452

E3M914              	100.00%		L0PDU2              	100.00%
Bootstrap support for E3M914 as seed ortholog is 100%.
Bootstrap support for L0PDU2 as seed ortholog is 100%.

Group of orthologs #179. Best score 452 bits
Score difference with first non-orthologous sequence - C.remanei:452 P.jiroveci:452

E3N0I7              	100.00%		L0PE96              	100.00%
Bootstrap support for E3N0I7 as seed ortholog is 100%.
Bootstrap support for L0PE96 as seed ortholog is 100%.

Group of orthologs #180. Best score 451 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:60

E3NMZ8              	100.00%		L0PFW2              	100.00%
E3NCN5              	17.14%		
Bootstrap support for E3NMZ8 as seed ortholog is 99%.
Bootstrap support for L0PFW2 as seed ortholog is 94%.

Group of orthologs #181. Best score 450 bits
Score difference with first non-orthologous sequence - C.remanei:450 P.jiroveci:450

E3LY57              	100.00%		L0PCS3              	100.00%
Bootstrap support for E3LY57 as seed ortholog is 100%.
Bootstrap support for L0PCS3 as seed ortholog is 100%.

Group of orthologs #182. Best score 450 bits
Score difference with first non-orthologous sequence - C.remanei:192 P.jiroveci:329

E3MG70              	100.00%		L0PCD8              	100.00%
Bootstrap support for E3MG70 as seed ortholog is 99%.
Bootstrap support for L0PCD8 as seed ortholog is 100%.

Group of orthologs #183. Best score 449 bits
Score difference with first non-orthologous sequence - C.remanei:187 P.jiroveci:190

E3LTL8              	100.00%		L0PC38              	100.00%
Bootstrap support for E3LTL8 as seed ortholog is 99%.
Bootstrap support for L0PC38 as seed ortholog is 100%.

Group of orthologs #184. Best score 448 bits
Score difference with first non-orthologous sequence - C.remanei:8 P.jiroveci:448

E3M8C8              	100.00%		L0P890              	100.00%
Bootstrap support for E3M8C8 as seed ortholog is 60%.
Alternative seed ortholog is E3MCC7 (8 bits away from this cluster)
Bootstrap support for L0P890 as seed ortholog is 100%.

Group of orthologs #185. Best score 448 bits
Score difference with first non-orthologous sequence - C.remanei:118 P.jiroveci:448

E3NFT3              	100.00%		L0PBL6              	100.00%
Bootstrap support for E3NFT3 as seed ortholog is 99%.
Bootstrap support for L0PBL6 as seed ortholog is 100%.

Group of orthologs #186. Best score 447 bits
Score difference with first non-orthologous sequence - C.remanei:447 P.jiroveci:447

E3LV24              	100.00%		L0PER3              	100.00%
Bootstrap support for E3LV24 as seed ortholog is 100%.
Bootstrap support for L0PER3 as seed ortholog is 100%.

Group of orthologs #187. Best score 447 bits
Score difference with first non-orthologous sequence - C.remanei:351 P.jiroveci:447

E3N600              	100.00%		L0PB50              	100.00%
Bootstrap support for E3N600 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #188. Best score 445 bits
Score difference with first non-orthologous sequence - C.remanei:445 P.jiroveci:353

E3LN68              	100.00%		L0PBU6              	100.00%
Bootstrap support for E3LN68 as seed ortholog is 100%.
Bootstrap support for L0PBU6 as seed ortholog is 100%.

Group of orthologs #189. Best score 445 bits
Score difference with first non-orthologous sequence - C.remanei:357 P.jiroveci:445

E3NL24              	100.00%		L0P921              	100.00%
Bootstrap support for E3NL24 as seed ortholog is 100%.
Bootstrap support for L0P921 as seed ortholog is 100%.

Group of orthologs #190. Best score 444 bits
Score difference with first non-orthologous sequence - C.remanei:444 P.jiroveci:236

E3NGP7              	100.00%		L0PED9              	100.00%
E3NU35              	29.48%		
Bootstrap support for E3NGP7 as seed ortholog is 100%.
Bootstrap support for L0PED9 as seed ortholog is 100%.

Group of orthologs #191. Best score 444 bits
Score difference with first non-orthologous sequence - C.remanei:380 P.jiroveci:444

E3M3S6              	100.00%		L0P992              	100.00%
Bootstrap support for E3M3S6 as seed ortholog is 100%.
Bootstrap support for L0P992 as seed ortholog is 100%.

Group of orthologs #192. Best score 443 bits
Score difference with first non-orthologous sequence - C.remanei:243 P.jiroveci:15

E3LG67              	100.00%		L0PAI4              	100.00%
Bootstrap support for E3LG67 as seed ortholog is 99%.
Bootstrap support for L0PAI4 as seed ortholog is 59%.
Alternative seed ortholog is L0PEY0 (15 bits away from this cluster)

Group of orthologs #193. Best score 442 bits
Score difference with first non-orthologous sequence - C.remanei:442 P.jiroveci:442

E3N3U7              	100.00%		L0P7N3              	100.00%
E3N3U6              	30.52%		
Bootstrap support for E3N3U7 as seed ortholog is 100%.
Bootstrap support for L0P7N3 as seed ortholog is 100%.

Group of orthologs #194. Best score 442 bits
Score difference with first non-orthologous sequence - C.remanei:442 P.jiroveci:442

E3LKT6              	100.00%		L0PDM3              	100.00%
Bootstrap support for E3LKT6 as seed ortholog is 100%.
Bootstrap support for L0PDM3 as seed ortholog is 100%.

Group of orthologs #195. Best score 442 bits
Score difference with first non-orthologous sequence - C.remanei:240 P.jiroveci:125

E3LZB8              	100.00%		L0P718              	100.00%
Bootstrap support for E3LZB8 as seed ortholog is 100%.
Bootstrap support for L0P718 as seed ortholog is 98%.

Group of orthologs #196. Best score 441 bits
Score difference with first non-orthologous sequence - C.remanei:280 P.jiroveci:441

E3MQL9              	100.00%		L0PET9              	100.00%
Bootstrap support for E3MQL9 as seed ortholog is 100%.
Bootstrap support for L0PET9 as seed ortholog is 100%.

Group of orthologs #197. Best score 439 bits
Score difference with first non-orthologous sequence - C.remanei:439 P.jiroveci:439

E3N788              	100.00%		L0PFQ5              	100.00%
Bootstrap support for E3N788 as seed ortholog is 100%.
Bootstrap support for L0PFQ5 as seed ortholog is 100%.

Group of orthologs #198. Best score 438 bits
Score difference with first non-orthologous sequence - C.remanei:438 P.jiroveci:438

E3LF22              	100.00%		L0P9F0              	100.00%
Bootstrap support for E3LF22 as seed ortholog is 100%.
Bootstrap support for L0P9F0 as seed ortholog is 100%.

Group of orthologs #199. Best score 437 bits
Score difference with first non-orthologous sequence - C.remanei:148 P.jiroveci:437

E3MI31              	100.00%		L0P8R6              	100.00%
Bootstrap support for E3MI31 as seed ortholog is 99%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #200. Best score 437 bits
Score difference with first non-orthologous sequence - C.remanei:139 P.jiroveci:437

E3MQP1              	100.00%		L0PHY6              	100.00%
Bootstrap support for E3MQP1 as seed ortholog is 99%.
Bootstrap support for L0PHY6 as seed ortholog is 100%.

Group of orthologs #201. Best score 432 bits
Score difference with first non-orthologous sequence - C.remanei:432 P.jiroveci:432

E3M0P0              	100.00%		L0PAA4              	100.00%
E3M0I1              	5.55%		
Bootstrap support for E3M0P0 as seed ortholog is 100%.
Bootstrap support for L0PAA4 as seed ortholog is 100%.

Group of orthologs #202. Best score 432 bits
Score difference with first non-orthologous sequence - C.remanei:432 P.jiroveci:432

E3NWZ0              	100.00%		L0P9C7              	100.00%
Bootstrap support for E3NWZ0 as seed ortholog is 100%.
Bootstrap support for L0P9C7 as seed ortholog is 100%.

Group of orthologs #203. Best score 431 bits
Score difference with first non-orthologous sequence - C.remanei:85 P.jiroveci:280

E3LPX1              	100.00%		L0P9H5              	100.00%
E3MAV9              	18.26%		L0P8S4              	54.19%
E3M6X8              	14.72%		
Bootstrap support for E3LPX1 as seed ortholog is 95%.
Bootstrap support for L0P9H5 as seed ortholog is 100%.

Group of orthologs #204. Best score 431 bits
Score difference with first non-orthologous sequence - C.remanei:189 P.jiroveci:431

E3MUB8              	100.00%		L0PGN1              	100.00%
E3LVV9              	6.30%		
Bootstrap support for E3MUB8 as seed ortholog is 99%.
Bootstrap support for L0PGN1 as seed ortholog is 100%.

Group of orthologs #205. Best score 428 bits
Score difference with first non-orthologous sequence - C.remanei:148 P.jiroveci:428

E3LYH8              	100.00%		L0P9C8              	100.00%
Bootstrap support for E3LYH8 as seed ortholog is 99%.
Bootstrap support for L0P9C8 as seed ortholog is 100%.

Group of orthologs #206. Best score 426 bits
Score difference with first non-orthologous sequence - C.remanei:298 P.jiroveci:426

E3LGN3              	100.00%		L0P8N1              	100.00%
Bootstrap support for E3LGN3 as seed ortholog is 100%.
Bootstrap support for L0P8N1 as seed ortholog is 100%.

Group of orthologs #207. Best score 426 bits
Score difference with first non-orthologous sequence - C.remanei:426 P.jiroveci:426

E3LR91              	100.00%		L0PA41              	100.00%
Bootstrap support for E3LR91 as seed ortholog is 100%.
Bootstrap support for L0PA41 as seed ortholog is 100%.

Group of orthologs #208. Best score 422 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:422

E3N626              	100.00%		L0PI13              	100.00%
E3LDR1              	20.56%		
E3M847              	13.96%		
E3MK14              	13.45%		
E3M428              	12.69%		
E3M875              	11.93%		
E3M878              	10.41%		
Bootstrap support for E3N626 as seed ortholog is 99%.
Bootstrap support for L0PI13 as seed ortholog is 100%.

Group of orthologs #209. Best score 422 bits
Score difference with first non-orthologous sequence - C.remanei:422 P.jiroveci:422

E3LUG3              	100.00%		L0PD69              	100.00%
Bootstrap support for E3LUG3 as seed ortholog is 100%.
Bootstrap support for L0PD69 as seed ortholog is 100%.

Group of orthologs #210. Best score 418 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:418

E3LWK0              	100.00%		L0P9G2              	100.00%
Bootstrap support for E3LWK0 as seed ortholog is 97%.
Bootstrap support for L0P9G2 as seed ortholog is 100%.

Group of orthologs #211. Best score 418 bits
Score difference with first non-orthologous sequence - C.remanei:152 P.jiroveci:186

E3LXQ6              	100.00%		L0PEM1              	100.00%
Bootstrap support for E3LXQ6 as seed ortholog is 99%.
Bootstrap support for L0PEM1 as seed ortholog is 100%.

Group of orthologs #212. Best score 417 bits
Score difference with first non-orthologous sequence - C.remanei:417 P.jiroveci:417

E3N0I3              	100.00%		L0PG05              	100.00%
E3MBW2              	73.59%		
Bootstrap support for E3N0I3 as seed ortholog is 100%.
Bootstrap support for L0PG05 as seed ortholog is 100%.

Group of orthologs #213. Best score 417 bits
Score difference with first non-orthologous sequence - C.remanei:417 P.jiroveci:417

E3LY14              	100.00%		L0PBW7              	100.00%
Bootstrap support for E3LY14 as seed ortholog is 100%.
Bootstrap support for L0PBW7 as seed ortholog is 100%.

Group of orthologs #214. Best score 415 bits
Score difference with first non-orthologous sequence - C.remanei:194 P.jiroveci:415

E3LZB1              	100.00%		L0PE41              	100.00%
Bootstrap support for E3LZB1 as seed ortholog is 99%.
Bootstrap support for L0PE41 as seed ortholog is 100%.

Group of orthologs #215. Best score 414 bits
Score difference with first non-orthologous sequence - C.remanei:414 P.jiroveci:414

E3M6A4              	100.00%		L0PBL0              	100.00%
Bootstrap support for E3M6A4 as seed ortholog is 100%.
Bootstrap support for L0PBL0 as seed ortholog is 100%.

Group of orthologs #216. Best score 411 bits
Score difference with first non-orthologous sequence - C.remanei:229 P.jiroveci:197

E3N4R8              	100.00%		L0PHE4              	100.00%
Bootstrap support for E3N4R8 as seed ortholog is 100%.
Bootstrap support for L0PHE4 as seed ortholog is 100%.

Group of orthologs #217. Best score 410 bits
Score difference with first non-orthologous sequence - C.remanei:410 P.jiroveci:410

E3MFG1              	100.00%		L0PEE3              	100.00%
E3M7J6              	35.92%		
Bootstrap support for E3MFG1 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #218. Best score 410 bits
Score difference with first non-orthologous sequence - C.remanei:104 P.jiroveci:351

E3M7F2              	100.00%		L0PBW1              	100.00%
Bootstrap support for E3M7F2 as seed ortholog is 99%.
Bootstrap support for L0PBW1 as seed ortholog is 100%.

Group of orthologs #219. Best score 409 bits
Score difference with first non-orthologous sequence - C.remanei:191 P.jiroveci:211

E3MAN9              	100.00%		L0PFB1              	100.00%
E3NLN0              	11.48%		
Bootstrap support for E3MAN9 as seed ortholog is 99%.
Bootstrap support for L0PFB1 as seed ortholog is 100%.

Group of orthologs #220. Best score 409 bits
Score difference with first non-orthologous sequence - C.remanei:409 P.jiroveci:409

E3M3H5              	100.00%		L0PB35              	100.00%
Bootstrap support for E3M3H5 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 100%.

Group of orthologs #221. Best score 407 bits
Score difference with first non-orthologous sequence - C.remanei:407 P.jiroveci:407

E3LRM1              	100.00%		L0P9J7              	100.00%
Bootstrap support for E3LRM1 as seed ortholog is 100%.
Bootstrap support for L0P9J7 as seed ortholog is 100%.

Group of orthologs #222. Best score 403 bits
Score difference with first non-orthologous sequence - C.remanei:403 P.jiroveci:403

E3LEM2              	100.00%		L0P7M4              	100.00%
E3MX83              	71.70%		L0PH62              	51.41%
Bootstrap support for E3LEM2 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #223. Best score 403 bits
Score difference with first non-orthologous sequence - C.remanei:403 P.jiroveci:403

E3MNE1              	100.00%		L0P7D2              	100.00%
E3LRT7              	23.57%		
Bootstrap support for E3MNE1 as seed ortholog is 100%.
Bootstrap support for L0P7D2 as seed ortholog is 100%.

Group of orthologs #224. Best score 402 bits
Score difference with first non-orthologous sequence - C.remanei:129 P.jiroveci:402

E3LVB1              	100.00%		L0PB68              	100.00%
Bootstrap support for E3LVB1 as seed ortholog is 99%.
Bootstrap support for L0PB68 as seed ortholog is 100%.

Group of orthologs #225. Best score 400 bits
Score difference with first non-orthologous sequence - C.remanei:108 P.jiroveci:400

E3MQH8              	100.00%		L0PCN1              	100.00%
E3M0Y8              	88.79%		
Bootstrap support for E3MQH8 as seed ortholog is 99%.
Bootstrap support for L0PCN1 as seed ortholog is 100%.

Group of orthologs #226. Best score 399 bits
Score difference with first non-orthologous sequence - C.remanei:399 P.jiroveci:399

E3MC48              	100.00%		L0PGA8              	100.00%
E3LX61              	38.37%		
Bootstrap support for E3MC48 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #227. Best score 399 bits
Score difference with first non-orthologous sequence - C.remanei:399 P.jiroveci:399

E3M7U3              	100.00%		L0PG48              	100.00%
Bootstrap support for E3M7U3 as seed ortholog is 100%.
Bootstrap support for L0PG48 as seed ortholog is 100%.

Group of orthologs #228. Best score 398 bits
Score difference with first non-orthologous sequence - C.remanei:398 P.jiroveci:398

E3MT19              	100.00%		L0PAS3              	100.00%
E3NPG2              	98.91%		
Bootstrap support for E3MT19 as seed ortholog is 100%.
Bootstrap support for L0PAS3 as seed ortholog is 100%.

Group of orthologs #229. Best score 398 bits
Score difference with first non-orthologous sequence - C.remanei:160 P.jiroveci:398

E3MI15              	100.00%		L0PBI1              	100.00%
Bootstrap support for E3MI15 as seed ortholog is 99%.
Bootstrap support for L0PBI1 as seed ortholog is 100%.

Group of orthologs #230. Best score 395 bits
Score difference with first non-orthologous sequence - C.remanei:162 P.jiroveci:395

E3LKU3              	100.00%		L0PCE9              	100.00%
Bootstrap support for E3LKU3 as seed ortholog is 99%.
Bootstrap support for L0PCE9 as seed ortholog is 100%.

Group of orthologs #231. Best score 394 bits
Score difference with first non-orthologous sequence - C.remanei:241 P.jiroveci:394

E3LY99              	100.00%		L0PEZ0              	100.00%
Bootstrap support for E3LY99 as seed ortholog is 100%.
Bootstrap support for L0PEZ0 as seed ortholog is 100%.

Group of orthologs #232. Best score 391 bits
Score difference with first non-orthologous sequence - C.remanei:257 P.jiroveci:267

E3LT69              	100.00%		L0PDA0              	100.00%
E3MV29              	17.38%		
Bootstrap support for E3LT69 as seed ortholog is 100%.
Bootstrap support for L0PDA0 as seed ortholog is 100%.

Group of orthologs #233. Best score 390 bits
Score difference with first non-orthologous sequence - C.remanei:29 P.jiroveci:204

E3LG20              	100.00%		L0PAW8              	100.00%
E3NHV6              	80.33%		
Bootstrap support for E3LG20 as seed ortholog is 66%.
Alternative seed ortholog is E3LYA4 (29 bits away from this cluster)
Bootstrap support for L0PAW8 as seed ortholog is 99%.

Group of orthologs #234. Best score 390 bits
Score difference with first non-orthologous sequence - C.remanei:390 P.jiroveci:390

E3MWE9              	100.00%		L0P9I4              	100.00%
Bootstrap support for E3MWE9 as seed ortholog is 100%.
Bootstrap support for L0P9I4 as seed ortholog is 100%.

Group of orthologs #235. Best score 389 bits
Score difference with first non-orthologous sequence - C.remanei:102 P.jiroveci:389

E3LR49              	100.00%		L0P8E8              	100.00%
                    	       		L0PEB0              	100.00%
Bootstrap support for E3LR49 as seed ortholog is 99%.
Bootstrap support for L0P8E8 as seed ortholog is 100%.
Bootstrap support for L0PEB0 as seed ortholog is 100%.

Group of orthologs #236. Best score 389 bits
Score difference with first non-orthologous sequence - C.remanei:389 P.jiroveci:389

E3MCT7              	100.00%		L0PAP1              	100.00%
Bootstrap support for E3MCT7 as seed ortholog is 100%.
Bootstrap support for L0PAP1 as seed ortholog is 100%.

Group of orthologs #237. Best score 388 bits
Score difference with first non-orthologous sequence - C.remanei:388 P.jiroveci:388

E3LRF3              	100.00%		L0PFC2              	100.00%
Bootstrap support for E3LRF3 as seed ortholog is 100%.
Bootstrap support for L0PFC2 as seed ortholog is 100%.

Group of orthologs #238. Best score 388 bits
Score difference with first non-orthologous sequence - C.remanei:388 P.jiroveci:388

E3M7Z7              	100.00%		L0P9V7              	100.00%
Bootstrap support for E3M7Z7 as seed ortholog is 100%.
Bootstrap support for L0P9V7 as seed ortholog is 100%.

Group of orthologs #239. Best score 388 bits
Score difference with first non-orthologous sequence - C.remanei:331 P.jiroveci:388

E3M491              	100.00%		L0PEE4              	100.00%
Bootstrap support for E3M491 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.

Group of orthologs #240. Best score 387 bits
Score difference with first non-orthologous sequence - C.remanei:233 P.jiroveci:387

E3LEH6              	100.00%		L0PA15              	100.00%
Bootstrap support for E3LEH6 as seed ortholog is 100%.
Bootstrap support for L0PA15 as seed ortholog is 100%.

Group of orthologs #241. Best score 387 bits
Score difference with first non-orthologous sequence - C.remanei:387 P.jiroveci:387

E3MLE8              	100.00%		L0PF52              	100.00%
Bootstrap support for E3MLE8 as seed ortholog is 100%.
Bootstrap support for L0PF52 as seed ortholog is 100%.

Group of orthologs #242. Best score 384 bits
Score difference with first non-orthologous sequence - C.remanei:384 P.jiroveci:92

E3M5B0              	100.00%		L0PDH7              	100.00%
E3NQ82              	100.00%		
Bootstrap support for E3M5B0 as seed ortholog is 100%.
Bootstrap support for E3NQ82 as seed ortholog is 100%.
Bootstrap support for L0PDH7 as seed ortholog is 99%.

Group of orthologs #243. Best score 384 bits
Score difference with first non-orthologous sequence - C.remanei:282 P.jiroveci:22

E3LDR3              	100.00%		L0PE81              	100.00%
Bootstrap support for E3LDR3 as seed ortholog is 100%.
Bootstrap support for L0PE81 as seed ortholog is 87%.

Group of orthologs #244. Best score 384 bits
Score difference with first non-orthologous sequence - C.remanei:384 P.jiroveci:384

E3MI21              	100.00%		L0PBG8              	100.00%
Bootstrap support for E3MI21 as seed ortholog is 100%.
Bootstrap support for L0PBG8 as seed ortholog is 100%.

Group of orthologs #245. Best score 383 bits
Score difference with first non-orthologous sequence - C.remanei:319 P.jiroveci:383

E3LT50              	100.00%		L0P942              	100.00%
E3LM61              	57.08%		L0P7J6              	58.37%
Bootstrap support for E3LT50 as seed ortholog is 99%.
Bootstrap support for L0P942 as seed ortholog is 100%.

Group of orthologs #246. Best score 383 bits
Score difference with first non-orthologous sequence - C.remanei:278 P.jiroveci:383

E3LSG0              	100.00%		L0PAL3              	100.00%
Bootstrap support for E3LSG0 as seed ortholog is 100%.
Bootstrap support for L0PAL3 as seed ortholog is 100%.

Group of orthologs #247. Best score 383 bits
Score difference with first non-orthologous sequence - C.remanei:383 P.jiroveci:383

E3M373              	100.00%		L0P6R7              	100.00%
Bootstrap support for E3M373 as seed ortholog is 100%.
Bootstrap support for L0P6R7 as seed ortholog is 100%.

Group of orthologs #248. Best score 382 bits
Score difference with first non-orthologous sequence - C.remanei:211 P.jiroveci:382

E3NEV6              	100.00%		L0PDT0              	100.00%
Bootstrap support for E3NEV6 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #249. Best score 379 bits
Score difference with first non-orthologous sequence - C.remanei:379 P.jiroveci:379

E3M562              	100.00%		L0PCY5              	100.00%
E3NR43              	76.62%		
Bootstrap support for E3M562 as seed ortholog is 100%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #250. Best score 377 bits
Score difference with first non-orthologous sequence - C.remanei:377 P.jiroveci:377

E3LFH8              	100.00%		L0PAH9              	100.00%
                    	       		L0PAZ7              	31.83%
Bootstrap support for E3LFH8 as seed ortholog is 100%.
Bootstrap support for L0PAH9 as seed ortholog is 100%.

Group of orthologs #251. Best score 376 bits
Score difference with first non-orthologous sequence - C.remanei:184 P.jiroveci:376

E3LTJ2              	100.00%		L0PCP3              	100.00%
E3LTJ0              	93.49%		
Bootstrap support for E3LTJ2 as seed ortholog is 99%.
Bootstrap support for L0PCP3 as seed ortholog is 100%.

Group of orthologs #252. Best score 376 bits
Score difference with first non-orthologous sequence - C.remanei:376 P.jiroveci:376

E3LK15              	100.00%		L0PFY1              	100.00%
Bootstrap support for E3LK15 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #253. Best score 375 bits
Score difference with first non-orthologous sequence - C.remanei:375 P.jiroveci:375

E3MSV5              	100.00%		L0PCQ7              	100.00%
E3MSV9              	49.86%		
Bootstrap support for E3MSV5 as seed ortholog is 100%.
Bootstrap support for L0PCQ7 as seed ortholog is 100%.

Group of orthologs #254. Best score 374 bits
Score difference with first non-orthologous sequence - C.remanei:374 P.jiroveci:374

E3NHT4              	100.00%		L0P8Z3              	100.00%
E3NL01              	40.94%		
Bootstrap support for E3NHT4 as seed ortholog is 100%.
Bootstrap support for L0P8Z3 as seed ortholog is 100%.

Group of orthologs #255. Best score 373 bits
Score difference with first non-orthologous sequence - C.remanei:373 P.jiroveci:373

E3LY39              	100.00%		L0PBA9              	100.00%
Bootstrap support for E3LY39 as seed ortholog is 100%.
Bootstrap support for L0PBA9 as seed ortholog is 100%.

Group of orthologs #256. Best score 372 bits
Score difference with first non-orthologous sequence - C.remanei:372 P.jiroveci:372

E3LGA3              	100.00%		L0PF49              	100.00%
Bootstrap support for E3LGA3 as seed ortholog is 100%.
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #257. Best score 371 bits
Score difference with first non-orthologous sequence - C.remanei:371 P.jiroveci:371

E3M1K2              	100.00%		L0PB82              	100.00%
Bootstrap support for E3M1K2 as seed ortholog is 100%.
Bootstrap support for L0PB82 as seed ortholog is 100%.

Group of orthologs #258. Best score 371 bits
Score difference with first non-orthologous sequence - C.remanei:371 P.jiroveci:371

E3NKQ7              	100.00%		L0PFT7              	100.00%
Bootstrap support for E3NKQ7 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #259. Best score 368 bits
Score difference with first non-orthologous sequence - C.remanei:69 P.jiroveci:206

E3N6Z0              	100.00%		L0P9Z0              	100.00%
E3N6S0              	62.84%		
Bootstrap support for E3N6Z0 as seed ortholog is 97%.
Bootstrap support for L0P9Z0 as seed ortholog is 100%.

Group of orthologs #260. Best score 368 bits
Score difference with first non-orthologous sequence - C.remanei:240 P.jiroveci:274

E3NBV6              	100.00%		L0PFE7              	100.00%
Bootstrap support for E3NBV6 as seed ortholog is 100%.
Bootstrap support for L0PFE7 as seed ortholog is 100%.

Group of orthologs #261. Best score 367 bits
Score difference with first non-orthologous sequence - C.remanei:367 P.jiroveci:367

E3LPN9              	100.00%		L0PBE9              	100.00%
Bootstrap support for E3LPN9 as seed ortholog is 100%.
Bootstrap support for L0PBE9 as seed ortholog is 100%.

Group of orthologs #262. Best score 366 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:366

E3LQH9              	100.00%		L0PA23              	100.00%
E3LQM0              	100.00%		
Bootstrap support for E3LQH9 as seed ortholog is 99%.
Bootstrap support for E3LQM0 as seed ortholog is 99%.
Bootstrap support for L0PA23 as seed ortholog is 100%.

Group of orthologs #263. Best score 366 bits
Score difference with first non-orthologous sequence - C.remanei:282 P.jiroveci:366

E3LY16              	100.00%		L0P7S7              	100.00%
Bootstrap support for E3LY16 as seed ortholog is 100%.
Bootstrap support for L0P7S7 as seed ortholog is 100%.

Group of orthologs #264. Best score 366 bits
Score difference with first non-orthologous sequence - C.remanei:366 P.jiroveci:366

E3MLZ8              	100.00%		L0PAU1              	100.00%
Bootstrap support for E3MLZ8 as seed ortholog is 100%.
Bootstrap support for L0PAU1 as seed ortholog is 100%.

Group of orthologs #265. Best score 366 bits
Score difference with first non-orthologous sequence - C.remanei:366 P.jiroveci:366

E3MT22              	100.00%		L0PBN4              	100.00%
Bootstrap support for E3MT22 as seed ortholog is 100%.
Bootstrap support for L0PBN4 as seed ortholog is 100%.

Group of orthologs #266. Best score 364 bits
Score difference with first non-orthologous sequence - C.remanei:364 P.jiroveci:364

E3M7L8              	100.00%		L0PHJ7              	100.00%
Bootstrap support for E3M7L8 as seed ortholog is 100%.
Bootstrap support for L0PHJ7 as seed ortholog is 100%.

Group of orthologs #267. Best score 363 bits
Score difference with first non-orthologous sequence - C.remanei:35 P.jiroveci:103

E3LS87              	100.00%		L0PAY3              	100.00%
Bootstrap support for E3LS87 as seed ortholog is 86%.
Bootstrap support for L0PAY3 as seed ortholog is 99%.

Group of orthologs #268. Best score 363 bits
Score difference with first non-orthologous sequence - C.remanei:363 P.jiroveci:363

E3MF85              	100.00%		L0PID0              	100.00%
Bootstrap support for E3MF85 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 100%.

Group of orthologs #269. Best score 363 bits
Score difference with first non-orthologous sequence - C.remanei:31 P.jiroveci:363

E3MG61              	100.00%		L0PH29              	100.00%
Bootstrap support for E3MG61 as seed ortholog is 80%.
Bootstrap support for L0PH29 as seed ortholog is 100%.

Group of orthologs #270. Best score 363 bits
Score difference with first non-orthologous sequence - C.remanei:363 P.jiroveci:363

E3N1N7              	100.00%		L0PGB8              	100.00%
Bootstrap support for E3N1N7 as seed ortholog is 100%.
Bootstrap support for L0PGB8 as seed ortholog is 100%.

Group of orthologs #271. Best score 360 bits
Score difference with first non-orthologous sequence - C.remanei:360 P.jiroveci:360

E3NCK3              	100.00%		L0PFQ8              	100.00%
Bootstrap support for E3NCK3 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #272. Best score 359 bits
Score difference with first non-orthologous sequence - C.remanei:309 P.jiroveci:272

E3MWQ6              	100.00%		L0P7T8              	100.00%
E3LCE1              	59.41%		
Bootstrap support for E3MWQ6 as seed ortholog is 100%.
Bootstrap support for L0P7T8 as seed ortholog is 100%.

Group of orthologs #273. Best score 357 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:139

E3MI93              	100.00%		L0PBU4              	100.00%
Bootstrap support for E3MI93 as seed ortholog is 100%.
Bootstrap support for L0PBU4 as seed ortholog is 100%.

Group of orthologs #274. Best score 356 bits
Score difference with first non-orthologous sequence - C.remanei:356 P.jiroveci:356

E3M7F9              	100.00%		L0PBT8              	100.00%
E3NR60              	77.61%		
Bootstrap support for E3M7F9 as seed ortholog is 100%.
Bootstrap support for L0PBT8 as seed ortholog is 100%.

Group of orthologs #275. Best score 355 bits
Score difference with first non-orthologous sequence - C.remanei:355 P.jiroveci:355

E3MQS1              	100.00%		L0PE98              	100.00%
E3LGT2              	19.02%		
Bootstrap support for E3MQS1 as seed ortholog is 100%.
Bootstrap support for L0PE98 as seed ortholog is 100%.

Group of orthologs #276. Best score 355 bits
Score difference with first non-orthologous sequence - C.remanei:252 P.jiroveci:355

E3MX16              	100.00%		L0PDF2              	100.00%
Bootstrap support for E3MX16 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #277. Best score 354 bits
Score difference with first non-orthologous sequence - C.remanei:354 P.jiroveci:354

E3MKT5              	100.00%		L0PFI9              	100.00%
Bootstrap support for E3MKT5 as seed ortholog is 100%.
Bootstrap support for L0PFI9 as seed ortholog is 100%.

Group of orthologs #278. Best score 354 bits
Score difference with first non-orthologous sequence - C.remanei:354 P.jiroveci:354

E3NGJ8              	100.00%		L0P9C9              	100.00%
Bootstrap support for E3NGJ8 as seed ortholog is 100%.
Bootstrap support for L0P9C9 as seed ortholog is 100%.

Group of orthologs #279. Best score 353 bits
Score difference with first non-orthologous sequence - C.remanei:353 P.jiroveci:353

E3LVI8              	100.00%		L0PFD9              	100.00%
E3MVY4              	60.05%		
Bootstrap support for E3LVI8 as seed ortholog is 100%.
Bootstrap support for L0PFD9 as seed ortholog is 100%.

Group of orthologs #280. Best score 352 bits
Score difference with first non-orthologous sequence - C.remanei:352 P.jiroveci:352

E3LWP5              	100.00%		L0PCR5              	100.00%
                    	       		L0P9C2              	57.99%
Bootstrap support for E3LWP5 as seed ortholog is 100%.
Bootstrap support for L0PCR5 as seed ortholog is 100%.

Group of orthologs #281. Best score 352 bits
Score difference with first non-orthologous sequence - C.remanei:352 P.jiroveci:352

E3LPL7              	100.00%		L0PGJ5              	100.00%
Bootstrap support for E3LPL7 as seed ortholog is 100%.
Bootstrap support for L0PGJ5 as seed ortholog is 100%.

Group of orthologs #282. Best score 352 bits
Score difference with first non-orthologous sequence - C.remanei:352 P.jiroveci:352

E3LVP6              	100.00%		L0PFR4              	100.00%
Bootstrap support for E3LVP6 as seed ortholog is 100%.
Bootstrap support for L0PFR4 as seed ortholog is 100%.

Group of orthologs #283. Best score 349 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:82

E3LPK7              	100.00%		L0PFY3              	100.00%
Bootstrap support for E3LPK7 as seed ortholog is 98%.
Bootstrap support for L0PFY3 as seed ortholog is 95%.

Group of orthologs #284. Best score 349 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:349

E3LZH3              	100.00%		L0PEF5              	100.00%
Bootstrap support for E3LZH3 as seed ortholog is 100%.
Bootstrap support for L0PEF5 as seed ortholog is 100%.

Group of orthologs #285. Best score 348 bits
Score difference with first non-orthologous sequence - C.remanei:348 P.jiroveci:348

E3LWV9              	100.00%		L0PCT1              	100.00%
Bootstrap support for E3LWV9 as seed ortholog is 100%.
Bootstrap support for L0PCT1 as seed ortholog is 100%.

Group of orthologs #286. Best score 347 bits
Score difference with first non-orthologous sequence - C.remanei:105 P.jiroveci:172

E3MMZ9              	100.00%		L0PA26              	100.00%
E3M2V0              	21.01%		
Bootstrap support for E3MMZ9 as seed ortholog is 99%.
Bootstrap support for L0PA26 as seed ortholog is 99%.

Group of orthologs #287. Best score 346 bits
Score difference with first non-orthologous sequence - C.remanei:346 P.jiroveci:346

E3MET4              	100.00%		L0P9G7              	100.00%
Bootstrap support for E3MET4 as seed ortholog is 100%.
Bootstrap support for L0P9G7 as seed ortholog is 100%.

Group of orthologs #288. Best score 345 bits
Score difference with first non-orthologous sequence - C.remanei:180 P.jiroveci:345

E3NEF8              	100.00%		L0P9R8              	100.00%
Bootstrap support for E3NEF8 as seed ortholog is 99%.
Bootstrap support for L0P9R8 as seed ortholog is 100%.

Group of orthologs #289. Best score 343 bits
Score difference with first non-orthologous sequence - C.remanei:15 P.jiroveci:119

E3M8Z0              	100.00%		L0PGJ9              	100.00%
Bootstrap support for E3M8Z0 as seed ortholog is 71%.
Alternative seed ortholog is E3LU97 (15 bits away from this cluster)
Bootstrap support for L0PGJ9 as seed ortholog is 99%.

Group of orthologs #290. Best score 342 bits
Score difference with first non-orthologous sequence - C.remanei:111 P.jiroveci:342

E3LS62              	100.00%		L0P702              	100.00%
Bootstrap support for E3LS62 as seed ortholog is 99%.
Bootstrap support for L0P702 as seed ortholog is 100%.

Group of orthologs #291. Best score 341 bits
Score difference with first non-orthologous sequence - C.remanei:341 P.jiroveci:341

E3N3U3              	100.00%		L0PGU0              	100.00%
E3N3U5              	100.00%		
Bootstrap support for E3N3U3 as seed ortholog is 100%.
Bootstrap support for E3N3U5 as seed ortholog is 100%.
Bootstrap support for L0PGU0 as seed ortholog is 100%.

Group of orthologs #292. Best score 341 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:249

E3LVK8              	100.00%		L0PA57              	100.00%
Bootstrap support for E3LVK8 as seed ortholog is 100%.
Bootstrap support for L0PA57 as seed ortholog is 100%.

Group of orthologs #293. Best score 340 bits
Score difference with first non-orthologous sequence - C.remanei:340 P.jiroveci:340

E3LWJ8              	100.00%		L0PIR9              	100.00%
Bootstrap support for E3LWJ8 as seed ortholog is 100%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #294. Best score 339 bits
Score difference with first non-orthologous sequence - C.remanei:339 P.jiroveci:339

E3M1E0              	100.00%		L0P8L6              	100.00%
E3M1E1              	52.56%		
Bootstrap support for E3M1E0 as seed ortholog is 100%.
Bootstrap support for L0P8L6 as seed ortholog is 100%.

Group of orthologs #295. Best score 338 bits
Score difference with first non-orthologous sequence - C.remanei:338 P.jiroveci:338

E3LT68              	100.00%		L0PDW0              	100.00%
Bootstrap support for E3LT68 as seed ortholog is 100%.
Bootstrap support for L0PDW0 as seed ortholog is 100%.

Group of orthologs #296. Best score 338 bits
Score difference with first non-orthologous sequence - C.remanei:338 P.jiroveci:171

E3MSF0              	100.00%		L0PBH6              	100.00%
Bootstrap support for E3MSF0 as seed ortholog is 100%.
Bootstrap support for L0PBH6 as seed ortholog is 99%.

Group of orthologs #297. Best score 337 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:337

E3MSU1              	100.00%		L0P7Z6              	100.00%
E3NVC2              	75.05%		
Bootstrap support for E3MSU1 as seed ortholog is 96%.
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #298. Best score 337 bits
Score difference with first non-orthologous sequence - C.remanei:337 P.jiroveci:337

E3LVC2              	100.00%		L0PFP6              	100.00%
Bootstrap support for E3LVC2 as seed ortholog is 100%.
Bootstrap support for L0PFP6 as seed ortholog is 100%.

Group of orthologs #299. Best score 336 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:336

E3LQL7              	100.00%		L0PA09              	100.00%
E3LQL6              	11.62%		
Bootstrap support for E3LQL7 as seed ortholog is 99%.
Bootstrap support for L0PA09 as seed ortholog is 100%.

Group of orthologs #300. Best score 336 bits
Score difference with first non-orthologous sequence - C.remanei:336 P.jiroveci:336

E3LWY8              	100.00%		L0PEZ3              	100.00%
Bootstrap support for E3LWY8 as seed ortholog is 100%.
Bootstrap support for L0PEZ3 as seed ortholog is 100%.

Group of orthologs #301. Best score 335 bits
Score difference with first non-orthologous sequence - C.remanei:335 P.jiroveci:335

E3LFV2              	100.00%		L0PEA0              	100.00%
Bootstrap support for E3LFV2 as seed ortholog is 100%.
Bootstrap support for L0PEA0 as seed ortholog is 100%.

Group of orthologs #302. Best score 335 bits
Score difference with first non-orthologous sequence - C.remanei:191 P.jiroveci:335

E3MFV2              	100.00%		L0PE19              	100.00%
Bootstrap support for E3MFV2 as seed ortholog is 100%.
Bootstrap support for L0PE19 as seed ortholog is 100%.

Group of orthologs #303. Best score 334 bits
Score difference with first non-orthologous sequence - C.remanei:90 P.jiroveci:29

E3LSY0              	100.00%		L0P6V9              	100.00%
E3MC52              	38.18%		
Bootstrap support for E3LSY0 as seed ortholog is 99%.
Bootstrap support for L0P6V9 as seed ortholog is 84%.

Group of orthologs #304. Best score 334 bits
Score difference with first non-orthologous sequence - C.remanei:223 P.jiroveci:334

E3LZD4              	100.00%		L0PI36              	100.00%
Bootstrap support for E3LZD4 as seed ortholog is 99%.
Bootstrap support for L0PI36 as seed ortholog is 100%.

Group of orthologs #305. Best score 333 bits
Score difference with first non-orthologous sequence - C.remanei:333 P.jiroveci:333

E3MI53              	100.00%		L0PB18              	100.00%
Bootstrap support for E3MI53 as seed ortholog is 100%.
Bootstrap support for L0PB18 as seed ortholog is 100%.

Group of orthologs #306. Best score 333 bits
Score difference with first non-orthologous sequence - C.remanei:237 P.jiroveci:333

E3N1N3              	100.00%		L0PA88              	100.00%
Bootstrap support for E3N1N3 as seed ortholog is 100%.
Bootstrap support for L0PA88 as seed ortholog is 100%.

Group of orthologs #307. Best score 332 bits
Score difference with first non-orthologous sequence - C.remanei:332 P.jiroveci:332

E3M6Y1              	100.00%		L0P7L7              	100.00%
Bootstrap support for E3M6Y1 as seed ortholog is 100%.
Bootstrap support for L0P7L7 as seed ortholog is 100%.

Group of orthologs #308. Best score 331 bits
Score difference with first non-orthologous sequence - C.remanei:100 P.jiroveci:331

E3MCI4              	100.00%		L0PAN7              	100.00%
Bootstrap support for E3MCI4 as seed ortholog is 99%.
Bootstrap support for L0PAN7 as seed ortholog is 100%.

Group of orthologs #309. Best score 330 bits
Score difference with first non-orthologous sequence - C.remanei:330 P.jiroveci:330

E3MET6              	100.00%		L0PB24              	100.00%
Bootstrap support for E3MET6 as seed ortholog is 100%.
Bootstrap support for L0PB24 as seed ortholog is 100%.

Group of orthologs #310. Best score 327 bits
Score difference with first non-orthologous sequence - C.remanei:327 P.jiroveci:327

E3NQM1              	100.00%		L0P9U8              	100.00%
E3M5M6              	98.63%		
Bootstrap support for E3NQM1 as seed ortholog is 100%.
Bootstrap support for L0P9U8 as seed ortholog is 100%.

Group of orthologs #311. Best score 326 bits
Score difference with first non-orthologous sequence - C.remanei:4 P.jiroveci:326

E3MXK6              	100.00%		L0PCQ8              	100.00%
E3MCX6              	17.42%		
Bootstrap support for E3MXK6 as seed ortholog is 53%.
Alternative seed ortholog is E3N7Z0 (4 bits away from this cluster)
Bootstrap support for L0PCQ8 as seed ortholog is 100%.

Group of orthologs #312. Best score 326 bits
Score difference with first non-orthologous sequence - C.remanei:24 P.jiroveci:326

E3MCW5              	100.00%		L0PCT6              	100.00%
Bootstrap support for E3MCW5 as seed ortholog is 67%.
Alternative seed ortholog is E3NWW5 (24 bits away from this cluster)
Bootstrap support for L0PCT6 as seed ortholog is 100%.

Group of orthologs #313. Best score 325 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:325

E3MLD1              	100.00%		L0PA13              	100.00%
E3MSQ6              	84.27%		
Bootstrap support for E3MLD1 as seed ortholog is 97%.
Bootstrap support for L0PA13 as seed ortholog is 100%.

Group of orthologs #314. Best score 323 bits
Score difference with first non-orthologous sequence - C.remanei:222 P.jiroveci:323

E3LM09              	100.00%		L0PA00              	100.00%
Bootstrap support for E3LM09 as seed ortholog is 100%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #315. Best score 322 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:158

E3M7J9              	100.00%		L0PFJ8              	100.00%
E3M7K0              	87.68%		
Bootstrap support for E3M7J9 as seed ortholog is 100%.
Bootstrap support for L0PFJ8 as seed ortholog is 99%.

Group of orthologs #316. Best score 321 bits
Score difference with first non-orthologous sequence - C.remanei:321 P.jiroveci:321

E3NH98              	100.00%		L0PCA7              	100.00%
E3NQ33              	97.43%		
Bootstrap support for E3NH98 as seed ortholog is 100%.
Bootstrap support for L0PCA7 as seed ortholog is 100%.

Group of orthologs #317. Best score 321 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:113

E3LGK6              	100.00%		L0PB21              	100.00%
Bootstrap support for E3LGK6 as seed ortholog is 100%.
Bootstrap support for L0PB21 as seed ortholog is 99%.

Group of orthologs #318. Best score 321 bits
Score difference with first non-orthologous sequence - C.remanei:220 P.jiroveci:210

E3NEZ9              	100.00%		L0P7Z7              	100.00%
Bootstrap support for E3NEZ9 as seed ortholog is 100%.
Bootstrap support for L0P7Z7 as seed ortholog is 100%.

Group of orthologs #319. Best score 319 bits
Score difference with first non-orthologous sequence - C.remanei:319 P.jiroveci:319

E3MT05              	100.00%		L0PD82              	100.00%
                    	       		L0P6Q8              	6.12%
Bootstrap support for E3MT05 as seed ortholog is 100%.
Bootstrap support for L0PD82 as seed ortholog is 100%.

Group of orthologs #320. Best score 319 bits
Score difference with first non-orthologous sequence - C.remanei:319 P.jiroveci:319

E3MCL1              	100.00%		L0PGF5              	100.00%
Bootstrap support for E3MCL1 as seed ortholog is 100%.
Bootstrap support for L0PGF5 as seed ortholog is 100%.

Group of orthologs #321. Best score 318 bits
Score difference with first non-orthologous sequence - C.remanei:90 P.jiroveci:84

E3MB25              	100.00%		L0P8Y6              	100.00%
E3M3R6              	68.58%		
Bootstrap support for E3MB25 as seed ortholog is 97%.
Bootstrap support for L0P8Y6 as seed ortholog is 96%.

Group of orthologs #322. Best score 318 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:318

E3LQF8              	100.00%		L0PBP3              	100.00%
Bootstrap support for E3LQF8 as seed ortholog is 98%.
Bootstrap support for L0PBP3 as seed ortholog is 100%.

Group of orthologs #323. Best score 318 bits
Score difference with first non-orthologous sequence - C.remanei:318 P.jiroveci:318

E3MI75              	100.00%		L0PBA8              	100.00%
Bootstrap support for E3MI75 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #324. Best score 318 bits
Score difference with first non-orthologous sequence - C.remanei:318 P.jiroveci:318

E3MYE5              	100.00%		L0P969              	100.00%
Bootstrap support for E3MYE5 as seed ortholog is 100%.
Bootstrap support for L0P969 as seed ortholog is 100%.

Group of orthologs #325. Best score 317 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:84

E3LNS4              	100.00%		L0P6U6              	100.00%
E3LWN2              	9.17%		
Bootstrap support for E3LNS4 as seed ortholog is 91%.
Bootstrap support for L0P6U6 as seed ortholog is 88%.

Group of orthologs #326. Best score 317 bits
Score difference with first non-orthologous sequence - C.remanei:4 P.jiroveci:317

E3MRB9              	100.00%		L0P9Y8              	100.00%
E3LE57              	29.73%		
Bootstrap support for E3MRB9 as seed ortholog is 54%.
Alternative seed ortholog is E3LPW4 (4 bits away from this cluster)
Bootstrap support for L0P9Y8 as seed ortholog is 100%.

Group of orthologs #327. Best score 317 bits
Score difference with first non-orthologous sequence - C.remanei:317 P.jiroveci:317

E3M514              	100.00%		L0PB54              	100.00%
Bootstrap support for E3M514 as seed ortholog is 100%.
Bootstrap support for L0PB54 as seed ortholog is 100%.

Group of orthologs #328. Best score 317 bits
Score difference with first non-orthologous sequence - C.remanei:317 P.jiroveci:317

E3MX15              	100.00%		L0P9K4              	100.00%
Bootstrap support for E3MX15 as seed ortholog is 100%.
Bootstrap support for L0P9K4 as seed ortholog is 100%.

Group of orthologs #329. Best score 316 bits
Score difference with first non-orthologous sequence - C.remanei:316 P.jiroveci:316

E3NIS9              	100.00%		L0PD02              	100.00%
Bootstrap support for E3NIS9 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 100%.

Group of orthologs #330. Best score 315 bits
Score difference with first non-orthologous sequence - C.remanei:28 P.jiroveci:119

E3MHU7              	100.00%		L0PAY5              	100.00%
Bootstrap support for E3MHU7 as seed ortholog is 78%.
Bootstrap support for L0PAY5 as seed ortholog is 99%.

Group of orthologs #331. Best score 314 bits
Score difference with first non-orthologous sequence - C.remanei:272 P.jiroveci:251

E3MLY0              	100.00%		L0PD17              	100.00%
E3NPY8              	54.99%		
Bootstrap support for E3MLY0 as seed ortholog is 100%.
Bootstrap support for L0PD17 as seed ortholog is 100%.

Group of orthologs #332. Best score 314 bits
Score difference with first non-orthologous sequence - C.remanei:134 P.jiroveci:198

E3MCV8              	100.00%		L0PGH8              	100.00%
Bootstrap support for E3MCV8 as seed ortholog is 99%.
Bootstrap support for L0PGH8 as seed ortholog is 100%.

Group of orthologs #333. Best score 314 bits
Score difference with first non-orthologous sequence - C.remanei:314 P.jiroveci:314

E3MY52              	100.00%		L0PBQ9              	100.00%
Bootstrap support for E3MY52 as seed ortholog is 100%.
Bootstrap support for L0PBQ9 as seed ortholog is 100%.

Group of orthologs #334. Best score 312 bits
Score difference with first non-orthologous sequence - C.remanei:312 P.jiroveci:312

E3N084              	100.00%		L0PCV8              	100.00%
Bootstrap support for E3N084 as seed ortholog is 100%.
Bootstrap support for L0PCV8 as seed ortholog is 100%.

Group of orthologs #335. Best score 311 bits
Score difference with first non-orthologous sequence - C.remanei:311 P.jiroveci:311

E3LIF9              	100.00%		L0PBI2              	100.00%
Bootstrap support for E3LIF9 as seed ortholog is 100%.
Bootstrap support for L0PBI2 as seed ortholog is 100%.

Group of orthologs #336. Best score 311 bits
Score difference with first non-orthologous sequence - C.remanei:311 P.jiroveci:311

E3LKT1              	100.00%		L0PAC7              	100.00%
Bootstrap support for E3LKT1 as seed ortholog is 100%.
Bootstrap support for L0PAC7 as seed ortholog is 100%.

Group of orthologs #337. Best score 311 bits
Score difference with first non-orthologous sequence - C.remanei:83 P.jiroveci:125

E3LRQ6              	100.00%		L0P6X2              	100.00%
Bootstrap support for E3LRQ6 as seed ortholog is 99%.
Bootstrap support for L0P6X2 as seed ortholog is 100%.

Group of orthologs #338. Best score 311 bits
Score difference with first non-orthologous sequence - C.remanei:311 P.jiroveci:311

E3N1P4              	100.00%		L0PBN2              	100.00%
Bootstrap support for E3N1P4 as seed ortholog is 100%.
Bootstrap support for L0PBN2 as seed ortholog is 100%.

Group of orthologs #339. Best score 309 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:309

E3LDS8              	100.00%		L0PGR0              	100.00%
E3LSV6              	34.63%		
Bootstrap support for E3LDS8 as seed ortholog is 86%.
Bootstrap support for L0PGR0 as seed ortholog is 100%.

Group of orthologs #340. Best score 309 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:168

E3NLI4              	100.00%		L0PC98              	100.00%
Bootstrap support for E3NLI4 as seed ortholog is 99%.
Bootstrap support for L0PC98 as seed ortholog is 99%.

Group of orthologs #341. Best score 308 bits
Score difference with first non-orthologous sequence - C.remanei:308 P.jiroveci:308

E3NJF0              	100.00%		L0PG82              	100.00%
E3MQX9              	97.82%		
Bootstrap support for E3NJF0 as seed ortholog is 100%.
Bootstrap support for L0PG82 as seed ortholog is 100%.

Group of orthologs #342. Best score 307 bits
Score difference with first non-orthologous sequence - C.remanei:307 P.jiroveci:307

E3M7Q8              	100.00%		L0PF30              	100.00%
E3NSP7              	92.89%		
Bootstrap support for E3M7Q8 as seed ortholog is 100%.
Bootstrap support for L0PF30 as seed ortholog is 100%.

Group of orthologs #343. Best score 306 bits
Score difference with first non-orthologous sequence - C.remanei:306 P.jiroveci:306

E3MXF2              	100.00%		L0PCH8              	100.00%
Bootstrap support for E3MXF2 as seed ortholog is 100%.
Bootstrap support for L0PCH8 as seed ortholog is 100%.

Group of orthologs #344. Best score 305 bits
Score difference with first non-orthologous sequence - C.remanei:305 P.jiroveci:305

E3LGF0              	100.00%		L0PA42              	100.00%
Bootstrap support for E3LGF0 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #345. Best score 305 bits
Score difference with first non-orthologous sequence - C.remanei:305 P.jiroveci:305

E3LGG8              	100.00%		L0PF46              	100.00%
Bootstrap support for E3LGG8 as seed ortholog is 100%.
Bootstrap support for L0PF46 as seed ortholog is 100%.

Group of orthologs #346. Best score 305 bits
Score difference with first non-orthologous sequence - C.remanei:305 P.jiroveci:305

E3LY27              	100.00%		L0PD03              	100.00%
Bootstrap support for E3LY27 as seed ortholog is 100%.
Bootstrap support for L0PD03 as seed ortholog is 100%.

Group of orthologs #347. Best score 304 bits
Score difference with first non-orthologous sequence - C.remanei:304 P.jiroveci:304

E3N1T6              	100.00%		L0PCB2              	100.00%
E3NTK8              	100.00%		
Bootstrap support for E3N1T6 as seed ortholog is 100%.
Bootstrap support for E3NTK8 as seed ortholog is 100%.
Bootstrap support for L0PCB2 as seed ortholog is 100%.

Group of orthologs #348. Best score 304 bits
Score difference with first non-orthologous sequence - C.remanei:304 P.jiroveci:304

E3MNA1              	100.00%		L0PBP4              	100.00%
Bootstrap support for E3MNA1 as seed ortholog is 100%.
Bootstrap support for L0PBP4 as seed ortholog is 100%.

Group of orthologs #349. Best score 303 bits
Score difference with first non-orthologous sequence - C.remanei:303 P.jiroveci:303

E3LGD4              	100.00%		L0PEJ3              	100.00%
Bootstrap support for E3LGD4 as seed ortholog is 100%.
Bootstrap support for L0PEJ3 as seed ortholog is 100%.

Group of orthologs #350. Best score 302 bits
Score difference with first non-orthologous sequence - C.remanei:203 P.jiroveci:302

E3M6D5              	100.00%		L0P7P4              	100.00%
Bootstrap support for E3M6D5 as seed ortholog is 100%.
Bootstrap support for L0P7P4 as seed ortholog is 100%.

Group of orthologs #351. Best score 301 bits
Score difference with first non-orthologous sequence - C.remanei:301 P.jiroveci:301

E3M710              	100.00%		L0PEZ2              	100.00%
                    	       		L0PH30              	86.08%
Bootstrap support for E3M710 as seed ortholog is 100%.
Bootstrap support for L0PEZ2 as seed ortholog is 100%.

Group of orthologs #352. Best score 301 bits
Score difference with first non-orthologous sequence - C.remanei:52 P.jiroveci:301

E3NJA8              	100.00%		L0PF23              	100.00%
E3NQR3              	42.24%		
Bootstrap support for E3NJA8 as seed ortholog is 83%.
Bootstrap support for L0PF23 as seed ortholog is 100%.

Group of orthologs #353. Best score 301 bits
Score difference with first non-orthologous sequence - C.remanei:301 P.jiroveci:301

E3M644              	100.00%		L0P7N5              	100.00%
Bootstrap support for E3M644 as seed ortholog is 100%.
Bootstrap support for L0P7N5 as seed ortholog is 100%.

Group of orthologs #354. Best score 301 bits
Score difference with first non-orthologous sequence - C.remanei:240 P.jiroveci:240

E3M8D4              	100.00%		L0PFY2              	100.00%
Bootstrap support for E3M8D4 as seed ortholog is 100%.
Bootstrap support for L0PFY2 as seed ortholog is 100%.

Group of orthologs #355. Best score 301 bits
Score difference with first non-orthologous sequence - C.remanei:14 P.jiroveci:301

E3MFP8              	100.00%		L0PBM5              	100.00%
Bootstrap support for E3MFP8 as seed ortholog is 61%.
Alternative seed ortholog is E3NKD1 (14 bits away from this cluster)
Bootstrap support for L0PBM5 as seed ortholog is 100%.

Group of orthologs #356. Best score 299 bits
Score difference with first non-orthologous sequence - C.remanei:165 P.jiroveci:299

E3LTG4              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	54.44%
Bootstrap support for E3LTG4 as seed ortholog is 99%.
Bootstrap support for L0PC17 as seed ortholog is 100%.

Group of orthologs #357. Best score 299 bits
Score difference with first non-orthologous sequence - C.remanei:299 P.jiroveci:299

E3LGI7              	100.00%		L0P9X7              	100.00%
Bootstrap support for E3LGI7 as seed ortholog is 100%.
Bootstrap support for L0P9X7 as seed ortholog is 100%.

Group of orthologs #358. Best score 299 bits
Score difference with first non-orthologous sequence - C.remanei:139 P.jiroveci:299

E3MYE2              	100.00%		L0PD18              	100.00%
Bootstrap support for E3MYE2 as seed ortholog is 99%.
Bootstrap support for L0PD18 as seed ortholog is 100%.

Group of orthologs #359. Best score 298 bits
Score difference with first non-orthologous sequence - C.remanei:298 P.jiroveci:298

E3MM92              	100.00%		L0PAK7              	100.00%
                    	       		L0P8F2              	69.71%
Bootstrap support for E3MM92 as seed ortholog is 100%.
Bootstrap support for L0PAK7 as seed ortholog is 100%.

Group of orthologs #360. Best score 298 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:298

E3LSB1              	100.00%		L0PAR0              	100.00%
Bootstrap support for E3LSB1 as seed ortholog is 93%.
Bootstrap support for L0PAR0 as seed ortholog is 100%.

Group of orthologs #361. Best score 298 bits
Score difference with first non-orthologous sequence - C.remanei:135 P.jiroveci:298

E3MP05              	100.00%		L0P891              	100.00%
Bootstrap support for E3MP05 as seed ortholog is 99%.
Bootstrap support for L0P891 as seed ortholog is 100%.

Group of orthologs #362. Best score 296 bits
Score difference with first non-orthologous sequence - C.remanei:204 P.jiroveci:296

E3MSH5              	100.00%		L0PBS9              	100.00%
Bootstrap support for E3MSH5 as seed ortholog is 100%.
Bootstrap support for L0PBS9 as seed ortholog is 100%.

Group of orthologs #363. Best score 294 bits
Score difference with first non-orthologous sequence - C.remanei:294 P.jiroveci:294

E3LPX7              	100.00%		L0P8W4              	100.00%
Bootstrap support for E3LPX7 as seed ortholog is 100%.
Bootstrap support for L0P8W4 as seed ortholog is 100%.

Group of orthologs #364. Best score 293 bits
Score difference with first non-orthologous sequence - C.remanei:293 P.jiroveci:293

E3LXV6              	100.00%		L0PHI3              	100.00%
Bootstrap support for E3LXV6 as seed ortholog is 100%.
Bootstrap support for L0PHI3 as seed ortholog is 100%.

Group of orthologs #365. Best score 292 bits
Score difference with first non-orthologous sequence - C.remanei:292 P.jiroveci:292

E3LGU3              	100.00%		L0PAG0              	100.00%
Bootstrap support for E3LGU3 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #366. Best score 292 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:66

E3M3G5              	100.00%		L0PF10              	100.00%
Bootstrap support for E3M3G5 as seed ortholog is 96%.
Bootstrap support for L0PF10 as seed ortholog is 98%.

Group of orthologs #367. Best score 290 bits
Score difference with first non-orthologous sequence - C.remanei:290 P.jiroveci:290

E3LR97              	100.00%		L0P861              	100.00%
Bootstrap support for E3LR97 as seed ortholog is 100%.
Bootstrap support for L0P861 as seed ortholog is 100%.

Group of orthologs #368. Best score 290 bits
Score difference with first non-orthologous sequence - C.remanei:290 P.jiroveci:290

E3N9A9              	100.00%		L0PAU5              	100.00%
Bootstrap support for E3N9A9 as seed ortholog is 100%.
Bootstrap support for L0PAU5 as seed ortholog is 100%.

Group of orthologs #369. Best score 290 bits
Score difference with first non-orthologous sequence - C.remanei:290 P.jiroveci:290

Q4TTM6              	100.00%		L0P7I8              	100.00%
Bootstrap support for Q4TTM6 as seed ortholog is 100%.
Bootstrap support for L0P7I8 as seed ortholog is 100%.

Group of orthologs #370. Best score 289 bits
Score difference with first non-orthologous sequence - C.remanei:150 P.jiroveci:59

E3MIG8              	100.00%		L0PBP2              	100.00%
E3NIE9              	19.15%		
Bootstrap support for E3MIG8 as seed ortholog is 99%.
Bootstrap support for L0PBP2 as seed ortholog is 85%.

Group of orthologs #371. Best score 289 bits
Score difference with first non-orthologous sequence - C.remanei:235 P.jiroveci:289

E3LGX6              	100.00%		L0PHJ3              	100.00%
Bootstrap support for E3LGX6 as seed ortholog is 100%.
Bootstrap support for L0PHJ3 as seed ortholog is 100%.

Group of orthologs #372. Best score 289 bits
Score difference with first non-orthologous sequence - C.remanei:142 P.jiroveci:89

E3MGA9              	100.00%		L0PC99              	100.00%
Bootstrap support for E3MGA9 as seed ortholog is 100%.
Bootstrap support for L0PC99 as seed ortholog is 97%.

Group of orthologs #373. Best score 289 bits
Score difference with first non-orthologous sequence - C.remanei:289 P.jiroveci:289

E3MI97              	100.00%		L0PAP4              	100.00%
Bootstrap support for E3MI97 as seed ortholog is 100%.
Bootstrap support for L0PAP4 as seed ortholog is 100%.

Group of orthologs #374. Best score 289 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:289

E3MRB8              	100.00%		L0PBY2              	100.00%
Bootstrap support for E3MRB8 as seed ortholog is 85%.
Bootstrap support for L0PBY2 as seed ortholog is 100%.

Group of orthologs #375. Best score 289 bits
Score difference with first non-orthologous sequence - C.remanei:289 P.jiroveci:289

E3MZR5              	100.00%		L0P9Z7              	100.00%
Bootstrap support for E3MZR5 as seed ortholog is 100%.
Bootstrap support for L0P9Z7 as seed ortholog is 100%.

Group of orthologs #376. Best score 288 bits
Score difference with first non-orthologous sequence - C.remanei:288 P.jiroveci:288

E3MLZ4              	100.00%		L0PDC7              	100.00%
E3NL45              	58.44%		
Bootstrap support for E3MLZ4 as seed ortholog is 100%.
Bootstrap support for L0PDC7 as seed ortholog is 100%.

Group of orthologs #377. Best score 288 bits
Score difference with first non-orthologous sequence - C.remanei:288 P.jiroveci:288

E3MYB1              	100.00%		L0PDV1              	100.00%
Bootstrap support for E3MYB1 as seed ortholog is 100%.
Bootstrap support for L0PDV1 as seed ortholog is 100%.

Group of orthologs #378. Best score 288 bits
Score difference with first non-orthologous sequence - C.remanei:288 P.jiroveci:288

E3N6N5              	100.00%		L0P8J2              	100.00%
Bootstrap support for E3N6N5 as seed ortholog is 100%.
Bootstrap support for L0P8J2 as seed ortholog is 100%.

Group of orthologs #379. Best score 287 bits
Score difference with first non-orthologous sequence - C.remanei:287 P.jiroveci:287

E3M7P6              	100.00%		L0PFI8              	100.00%
E3NRM9              	17.46%		
Bootstrap support for E3M7P6 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #380. Best score 287 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:287

E3MJN2              	100.00%		L0PG89              	100.00%
E3LDB9              	5.60%		
Bootstrap support for E3MJN2 as seed ortholog is 99%.
Bootstrap support for L0PG89 as seed ortholog is 100%.

Group of orthologs #381. Best score 287 bits
Score difference with first non-orthologous sequence - C.remanei:287 P.jiroveci:287

E3LVW3              	100.00%		L0P8R5              	100.00%
Bootstrap support for E3LVW3 as seed ortholog is 100%.
Bootstrap support for L0P8R5 as seed ortholog is 100%.

Group of orthologs #382. Best score 286 bits
Score difference with first non-orthologous sequence - C.remanei:286 P.jiroveci:286

E3MM52              	100.00%		L0PF68              	100.00%
E3MM48              	47.96%		
Bootstrap support for E3MM52 as seed ortholog is 100%.
Bootstrap support for L0PF68 as seed ortholog is 100%.

Group of orthologs #383. Best score 285 bits
Score difference with first non-orthologous sequence - C.remanei:285 P.jiroveci:285

E3N1P9              	100.00%		L0PDY1              	100.00%
E3M7I0              	18.91%		
Bootstrap support for E3N1P9 as seed ortholog is 100%.
Bootstrap support for L0PDY1 as seed ortholog is 100%.

Group of orthologs #384. Best score 285 bits
Score difference with first non-orthologous sequence - C.remanei:100 P.jiroveci:285

E3LUE4              	100.00%		L0PF83              	100.00%
Bootstrap support for E3LUE4 as seed ortholog is 99%.
Bootstrap support for L0PF83 as seed ortholog is 100%.

Group of orthologs #385. Best score 283 bits
Score difference with first non-orthologous sequence - C.remanei:283 P.jiroveci:283

E3MHT9              	100.00%		L0P9U3              	100.00%
Bootstrap support for E3MHT9 as seed ortholog is 100%.
Bootstrap support for L0P9U3 as seed ortholog is 100%.

Group of orthologs #386. Best score 282 bits
Score difference with first non-orthologous sequence - C.remanei:282 P.jiroveci:282

E3LSF0              	100.00%		L0PBD2              	100.00%
Bootstrap support for E3LSF0 as seed ortholog is 100%.
Bootstrap support for L0PBD2 as seed ortholog is 100%.

Group of orthologs #387. Best score 282 bits
Score difference with first non-orthologous sequence - C.remanei:282 P.jiroveci:282

E3M890              	100.00%		L0PF92              	100.00%
Bootstrap support for E3M890 as seed ortholog is 100%.
Bootstrap support for L0PF92 as seed ortholog is 100%.

Group of orthologs #388. Best score 281 bits
Score difference with first non-orthologous sequence - C.remanei:281 P.jiroveci:281

E3M726              	100.00%		L0PCG4              	100.00%
Bootstrap support for E3M726 as seed ortholog is 100%.
Bootstrap support for L0PCG4 as seed ortholog is 100%.

Group of orthologs #389. Best score 280 bits
Score difference with first non-orthologous sequence - C.remanei:280 P.jiroveci:280

E3NLH4              	100.00%		L0PD32              	100.00%
                    	       		L0PD26              	95.03%
Bootstrap support for E3NLH4 as seed ortholog is 100%.
Bootstrap support for L0PD32 as seed ortholog is 100%.

Group of orthologs #390. Best score 280 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:280

E3MGH3              	100.00%		L0PDL9              	100.00%
Bootstrap support for E3MGH3 as seed ortholog is 100%.
Bootstrap support for L0PDL9 as seed ortholog is 100%.

Group of orthologs #391. Best score 279 bits
Score difference with first non-orthologous sequence - C.remanei:152 P.jiroveci:230

E3LRL3              	100.00%		L0P8I7              	100.00%
Bootstrap support for E3LRL3 as seed ortholog is 100%.
Bootstrap support for L0P8I7 as seed ortholog is 100%.

Group of orthologs #392. Best score 277 bits
Score difference with first non-orthologous sequence - C.remanei:277 P.jiroveci:277

E3MGK3              	100.00%		L0P8N0              	100.00%
Bootstrap support for E3MGK3 as seed ortholog is 100%.
Bootstrap support for L0P8N0 as seed ortholog is 100%.

Group of orthologs #393. Best score 277 bits
Score difference with first non-orthologous sequence - C.remanei:125 P.jiroveci:277

E3NB14              	100.00%		L0PCJ5              	100.00%
Bootstrap support for E3NB14 as seed ortholog is 99%.
Bootstrap support for L0PCJ5 as seed ortholog is 100%.

Group of orthologs #394. Best score 276 bits
Score difference with first non-orthologous sequence - C.remanei:67 P.jiroveci:276

E3N7N0              	100.00%		L0PDF9              	100.00%
E3MFL2              	40.00%		
E3M5J4              	33.56%		
E3N9T7              	33.33%		
E3MDA7              	28.28%		
E3LU70              	19.08%		
E3LXV8              	15.40%		
E3LZR1              	12.87%		
E3LV88              	10.34%		
Bootstrap support for E3N7N0 as seed ortholog is 96%.
Bootstrap support for L0PDF9 as seed ortholog is 100%.

Group of orthologs #395. Best score 276 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:276

E3M3R4              	100.00%		L0P9F6              	100.00%
E3NAD2              	81.21%		
E3MZQ7              	67.05%		
E3MLZ7              	15.32%		
Bootstrap support for E3M3R4 as seed ortholog is 99%.
Bootstrap support for L0P9F6 as seed ortholog is 100%.

Group of orthologs #396. Best score 276 bits
Score difference with first non-orthologous sequence - C.remanei:132 P.jiroveci:214

E3MAK4              	100.00%		L0PGP6              	100.00%
E3N093              	38.69%		
Bootstrap support for E3MAK4 as seed ortholog is 100%.
Bootstrap support for L0PGP6 as seed ortholog is 100%.

Group of orthologs #397. Best score 276 bits
Score difference with first non-orthologous sequence - C.remanei:276 P.jiroveci:276

E3MCJ0              	100.00%		L0PEB2              	100.00%
Bootstrap support for E3MCJ0 as seed ortholog is 100%.
Bootstrap support for L0PEB2 as seed ortholog is 100%.

Group of orthologs #398. Best score 276 bits
Score difference with first non-orthologous sequence - C.remanei:276 P.jiroveci:276

E3NC86              	100.00%		L0PB28              	100.00%
Bootstrap support for E3NC86 as seed ortholog is 100%.
Bootstrap support for L0PB28 as seed ortholog is 100%.

Group of orthologs #399. Best score 275 bits
Score difference with first non-orthologous sequence - C.remanei:275 P.jiroveci:275

E3LF01              	100.00%		L0PCL9              	100.00%
Bootstrap support for E3LF01 as seed ortholog is 100%.
Bootstrap support for L0PCL9 as seed ortholog is 100%.

Group of orthologs #400. Best score 275 bits
Score difference with first non-orthologous sequence - C.remanei:275 P.jiroveci:275

E3MDH3              	100.00%		L0P870              	100.00%
Bootstrap support for E3MDH3 as seed ortholog is 100%.
Bootstrap support for L0P870 as seed ortholog is 100%.

Group of orthologs #401. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:274 P.jiroveci:274

E3M6N2              	100.00%		L0PDZ2              	100.00%
E3NS86              	98.16%		
Bootstrap support for E3M6N2 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #402. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:274 P.jiroveci:274

E3LFI0              	100.00%		L0PAQ1              	100.00%
Bootstrap support for E3LFI0 as seed ortholog is 100%.
Bootstrap support for L0PAQ1 as seed ortholog is 100%.

Group of orthologs #403. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:274 P.jiroveci:274

E3LUD7              	100.00%		L0PC82              	100.00%
Bootstrap support for E3LUD7 as seed ortholog is 100%.
Bootstrap support for L0PC82 as seed ortholog is 100%.

Group of orthologs #404. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:116

E3MEK7              	100.00%		L0PC59              	100.00%
Bootstrap support for E3MEK7 as seed ortholog is 99%.
Bootstrap support for L0PC59 as seed ortholog is 100%.

Group of orthologs #405. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:137

E3N6N6              	100.00%		L0PDB7              	100.00%
Bootstrap support for E3N6N6 as seed ortholog is 100%.
Bootstrap support for L0PDB7 as seed ortholog is 99%.

Group of orthologs #406. Best score 273 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:126

E3LYX2              	100.00%		L0P9E4              	100.00%
E3M6J9              	43.01%		
Bootstrap support for E3LYX2 as seed ortholog is 98%.
Bootstrap support for L0P9E4 as seed ortholog is 100%.

Group of orthologs #407. Best score 273 bits
Score difference with first non-orthologous sequence - C.remanei:273 P.jiroveci:273

E3MSW5              	100.00%		L0PDI7              	100.00%
Bootstrap support for E3MSW5 as seed ortholog is 100%.
Bootstrap support for L0PDI7 as seed ortholog is 100%.

Group of orthologs #408. Best score 272 bits
Score difference with first non-orthologous sequence - C.remanei:272 P.jiroveci:272

E3MCK9              	100.00%		L0PAJ2              	100.00%
Bootstrap support for E3MCK9 as seed ortholog is 100%.
Bootstrap support for L0PAJ2 as seed ortholog is 100%.

Group of orthologs #409. Best score 272 bits
Score difference with first non-orthologous sequence - C.remanei:272 P.jiroveci:272

E3MSX6              	100.00%		L0P8X3              	100.00%
Bootstrap support for E3MSX6 as seed ortholog is 100%.
Bootstrap support for L0P8X3 as seed ortholog is 100%.

Group of orthologs #410. Best score 271 bits
Score difference with first non-orthologous sequence - C.remanei:271 P.jiroveci:271

E3LY28              	100.00%		L0PFI2              	100.00%
Bootstrap support for E3LY28 as seed ortholog is 100%.
Bootstrap support for L0PFI2 as seed ortholog is 100%.

Group of orthologs #411. Best score 271 bits
Score difference with first non-orthologous sequence - C.remanei:271 P.jiroveci:271

E3M3K8              	100.00%		L0PCG0              	100.00%
Bootstrap support for E3M3K8 as seed ortholog is 100%.
Bootstrap support for L0PCG0 as seed ortholog is 100%.

Group of orthologs #412. Best score 271 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:271

E3M353              	100.00%		L0PEX5              	100.00%
Bootstrap support for E3M353 as seed ortholog is 91%.
Bootstrap support for L0PEX5 as seed ortholog is 100%.

Group of orthologs #413. Best score 270 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:270

E3LR98              	100.00%		L0P983              	100.00%
E3MVK9              	11.64%		
Bootstrap support for E3LR98 as seed ortholog is 90%.
Bootstrap support for L0P983 as seed ortholog is 100%.

Group of orthologs #414. Best score 270 bits
Score difference with first non-orthologous sequence - C.remanei:270 P.jiroveci:270

E3LQF7              	100.00%		L0P8X1              	100.00%
Bootstrap support for E3LQF7 as seed ortholog is 100%.
Bootstrap support for L0P8X1 as seed ortholog is 100%.

Group of orthologs #415. Best score 270 bits
Score difference with first non-orthologous sequence - C.remanei:270 P.jiroveci:270

E3LWQ6              	100.00%		L0P9X4              	100.00%
Bootstrap support for E3LWQ6 as seed ortholog is 100%.
Bootstrap support for L0P9X4 as seed ortholog is 100%.

Group of orthologs #416. Best score 270 bits
Score difference with first non-orthologous sequence - C.remanei:270 P.jiroveci:270

E3M853              	100.00%		L0PG96              	100.00%
Bootstrap support for E3M853 as seed ortholog is 100%.
Bootstrap support for L0PG96 as seed ortholog is 100%.

Group of orthologs #417. Best score 270 bits
Score difference with first non-orthologous sequence - C.remanei:270 P.jiroveci:270

E3MI66              	100.00%		L0PF98              	100.00%
Bootstrap support for E3MI66 as seed ortholog is 100%.
Bootstrap support for L0PF98 as seed ortholog is 100%.

Group of orthologs #418. Best score 269 bits
Score difference with first non-orthologous sequence - C.remanei:269 P.jiroveci:269

E3LFT4              	100.00%		L0P8R8              	100.00%
Bootstrap support for E3LFT4 as seed ortholog is 100%.
Bootstrap support for L0P8R8 as seed ortholog is 100%.

Group of orthologs #419. Best score 269 bits
Score difference with first non-orthologous sequence - C.remanei:23 P.jiroveci:269

E3LFI6              	100.00%		L0PGL8              	100.00%
Bootstrap support for E3LFI6 as seed ortholog is 67%.
Alternative seed ortholog is E3LFI8 (23 bits away from this cluster)
Bootstrap support for L0PGL8 as seed ortholog is 100%.

Group of orthologs #420. Best score 268 bits
Score difference with first non-orthologous sequence - C.remanei:268 P.jiroveci:268

E3LVY9              	100.00%		L0PHG7              	100.00%
Bootstrap support for E3LVY9 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 100%.

Group of orthologs #421. Best score 268 bits
Score difference with first non-orthologous sequence - C.remanei:268 P.jiroveci:268

E3NAX5              	100.00%		L0PFZ0              	100.00%
Bootstrap support for E3NAX5 as seed ortholog is 100%.
Bootstrap support for L0PFZ0 as seed ortholog is 100%.

Group of orthologs #422. Best score 267 bits
Score difference with first non-orthologous sequence - C.remanei:267 P.jiroveci:267

E3LGW6              	100.00%		L0PFJ5              	100.00%
Bootstrap support for E3LGW6 as seed ortholog is 100%.
Bootstrap support for L0PFJ5 as seed ortholog is 100%.

Group of orthologs #423. Best score 266 bits
Score difference with first non-orthologous sequence - C.remanei:197 P.jiroveci:166

E3LF56              	100.00%		L0PAC4              	100.00%
E3LCS7              	22.36%		L0P871              	98.39%
Bootstrap support for E3LF56 as seed ortholog is 100%.
Bootstrap support for L0PAC4 as seed ortholog is 100%.

Group of orthologs #424. Best score 265 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:265

E3N5P5              	100.00%		L0PC62              	100.00%
E3N5P8              	77.44%		
Bootstrap support for E3N5P5 as seed ortholog is 100%.
Bootstrap support for L0PC62 as seed ortholog is 100%.

Group of orthologs #425. Best score 265 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:265

E3MNL3              	100.00%		L0P9G9              	100.00%
Bootstrap support for E3MNL3 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #426. Best score 265 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:265

E3MXY0              	100.00%		L0P9B8              	100.00%
Bootstrap support for E3MXY0 as seed ortholog is 100%.
Bootstrap support for L0P9B8 as seed ortholog is 100%.

Group of orthologs #427. Best score 265 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:171

E3N7P5              	100.00%		L0PBN1              	100.00%
Bootstrap support for E3N7P5 as seed ortholog is 100%.
Bootstrap support for L0PBN1 as seed ortholog is 99%.

Group of orthologs #428. Best score 265 bits
Score difference with first non-orthologous sequence - C.remanei:265 P.jiroveci:265

E3N9G7              	100.00%		L0PEB1              	100.00%
Bootstrap support for E3N9G7 as seed ortholog is 100%.
Bootstrap support for L0PEB1 as seed ortholog is 100%.

Group of orthologs #429. Best score 264 bits
Score difference with first non-orthologous sequence - C.remanei:264 P.jiroveci:264

E3MNC8              	100.00%		L0PE52              	100.00%
                    	       		L0PIN5              	53.15%
Bootstrap support for E3MNC8 as seed ortholog is 100%.
Bootstrap support for L0PE52 as seed ortholog is 100%.

Group of orthologs #430. Best score 264 bits
Score difference with first non-orthologous sequence - C.remanei:264 P.jiroveci:264

E3MXE6              	100.00%		L0PBQ1              	100.00%
E3M5G9              	52.41%		
Bootstrap support for E3MXE6 as seed ortholog is 100%.
Bootstrap support for L0PBQ1 as seed ortholog is 100%.

Group of orthologs #431. Best score 264 bits
Score difference with first non-orthologous sequence - C.remanei:264 P.jiroveci:264

E3MT21              	100.00%		L0PDQ3              	100.00%
Bootstrap support for E3MT21 as seed ortholog is 100%.
Bootstrap support for L0PDQ3 as seed ortholog is 100%.

Group of orthologs #432. Best score 262 bits
Score difference with first non-orthologous sequence - C.remanei:206 P.jiroveci:262

E3LU18              	100.00%		L0PFE9              	100.00%
Bootstrap support for E3LU18 as seed ortholog is 100%.
Bootstrap support for L0PFE9 as seed ortholog is 100%.

Group of orthologs #433. Best score 261 bits
Score difference with first non-orthologous sequence - C.remanei:52 P.jiroveci:196

E3LEJ6              	100.00%		L0PFK8              	100.00%
                    	       		L0PCW4              	8.57%
Bootstrap support for E3LEJ6 as seed ortholog is 91%.
Bootstrap support for L0PFK8 as seed ortholog is 100%.

Group of orthologs #434. Best score 261 bits
Score difference with first non-orthologous sequence - C.remanei:261 P.jiroveci:261

E3LN57              	100.00%		L0P9P0              	100.00%
Bootstrap support for E3LN57 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #435. Best score 261 bits
Score difference with first non-orthologous sequence - C.remanei:261 P.jiroveci:261

E3MIF9              	100.00%		L0PES3              	100.00%
Bootstrap support for E3MIF9 as seed ortholog is 100%.
Bootstrap support for L0PES3 as seed ortholog is 100%.

Group of orthologs #436. Best score 261 bits
Score difference with first non-orthologous sequence - C.remanei:261 P.jiroveci:261

E3NDL9              	100.00%		L0PCY9              	100.00%
Bootstrap support for E3NDL9 as seed ortholog is 100%.
Bootstrap support for L0PCY9 as seed ortholog is 100%.

Group of orthologs #437. Best score 259 bits
Score difference with first non-orthologous sequence - C.remanei:259 P.jiroveci:259

E3LEN9              	100.00%		L0PBE0              	100.00%
E3NAU5              	44.25%		
Bootstrap support for E3LEN9 as seed ortholog is 100%.
Bootstrap support for L0PBE0 as seed ortholog is 100%.

Group of orthologs #438. Best score 259 bits
Score difference with first non-orthologous sequence - C.remanei:203 P.jiroveci:161

E3LFW0              	100.00%		L0PF24              	100.00%
E3N469              	24.60%		
Bootstrap support for E3LFW0 as seed ortholog is 100%.
Bootstrap support for L0PF24 as seed ortholog is 100%.

Group of orthologs #439. Best score 259 bits
Score difference with first non-orthologous sequence - C.remanei:259 P.jiroveci:259

E3LRM7              	100.00%		L0PF73              	100.00%
Bootstrap support for E3LRM7 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #440. Best score 257 bits
Score difference with first non-orthologous sequence - C.remanei:257 P.jiroveci:257

E3LWZ6              	100.00%		L0PHK3              	100.00%
Bootstrap support for E3LWZ6 as seed ortholog is 100%.
Bootstrap support for L0PHK3 as seed ortholog is 100%.

Group of orthologs #441. Best score 257 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:111

E3MR22              	100.00%		L0P8B4              	100.00%
Bootstrap support for E3MR22 as seed ortholog is 91%.
Bootstrap support for L0P8B4 as seed ortholog is 99%.

Group of orthologs #442. Best score 256 bits
Score difference with first non-orthologous sequence - C.remanei:256 P.jiroveci:256

E3MEW0              	100.00%		L0PAL8              	100.00%
Bootstrap support for E3MEW0 as seed ortholog is 100%.
Bootstrap support for L0PAL8 as seed ortholog is 100%.

Group of orthologs #443. Best score 255 bits
Score difference with first non-orthologous sequence - C.remanei:255 P.jiroveci:255

E3LFA6              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	74.16%
Bootstrap support for E3LFA6 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #444. Best score 255 bits
Score difference with first non-orthologous sequence - C.remanei:54 P.jiroveci:12

E3LN78              	100.00%		L0PD71              	100.00%
Bootstrap support for E3LN78 as seed ortholog is 91%.
Bootstrap support for L0PD71 as seed ortholog is 61%.
Alternative seed ortholog is L0P980 (12 bits away from this cluster)

Group of orthologs #445. Best score 255 bits
Score difference with first non-orthologous sequence - C.remanei:255 P.jiroveci:255

E3MCI2              	100.00%		L0PDD5              	100.00%
Bootstrap support for E3MCI2 as seed ortholog is 100%.
Bootstrap support for L0PDD5 as seed ortholog is 100%.

Group of orthologs #446. Best score 254 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:254

E3MA31              	100.00%		L0PDV0              	100.00%
Bootstrap support for E3MA31 as seed ortholog is 99%.
Bootstrap support for L0PDV0 as seed ortholog is 100%.

Group of orthologs #447. Best score 253 bits
Score difference with first non-orthologous sequence - C.remanei:253 P.jiroveci:253

E3LY91              	100.00%		L0PAF9              	100.00%
E3N6Q4              	58.03%		
Bootstrap support for E3LY91 as seed ortholog is 100%.
Bootstrap support for L0PAF9 as seed ortholog is 100%.

Group of orthologs #448. Best score 253 bits
Score difference with first non-orthologous sequence - C.remanei:253 P.jiroveci:253

E3LS61              	100.00%		L0PF74              	100.00%
Bootstrap support for E3LS61 as seed ortholog is 100%.
Bootstrap support for L0PF74 as seed ortholog is 100%.

Group of orthologs #449. Best score 252 bits
Score difference with first non-orthologous sequence - C.remanei:252 P.jiroveci:252

E3LHJ1              	100.00%		L0PAM2              	100.00%
E3LD05              	45.95%		
Bootstrap support for E3LHJ1 as seed ortholog is 100%.
Bootstrap support for L0PAM2 as seed ortholog is 100%.

Group of orthologs #450. Best score 252 bits
Score difference with first non-orthologous sequence - C.remanei:179 P.jiroveci:252

E3LVM2              	100.00%		L0PCV1              	100.00%
Bootstrap support for E3LVM2 as seed ortholog is 100%.
Bootstrap support for L0PCV1 as seed ortholog is 100%.

Group of orthologs #451. Best score 252 bits
Score difference with first non-orthologous sequence - C.remanei:252 P.jiroveci:252

E3M7P5              	100.00%		L0PH80              	100.00%
Bootstrap support for E3M7P5 as seed ortholog is 100%.
Bootstrap support for L0PH80 as seed ortholog is 100%.

Group of orthologs #452. Best score 252 bits
Score difference with first non-orthologous sequence - C.remanei:252 P.jiroveci:252

E3MX85              	100.00%		L0PFU1              	100.00%
Bootstrap support for E3MX85 as seed ortholog is 100%.
Bootstrap support for L0PFU1 as seed ortholog is 100%.

Group of orthologs #453. Best score 252 bits
Score difference with first non-orthologous sequence - C.remanei:252 P.jiroveci:252

E3NGD5              	100.00%		L0PEM6              	100.00%
Bootstrap support for E3NGD5 as seed ortholog is 100%.
Bootstrap support for L0PEM6 as seed ortholog is 100%.

Group of orthologs #454. Best score 251 bits
Score difference with first non-orthologous sequence - C.remanei:251 P.jiroveci:251

E3LZ14              	100.00%		L0PBP9              	100.00%
Bootstrap support for E3LZ14 as seed ortholog is 100%.
Bootstrap support for L0PBP9 as seed ortholog is 100%.

Group of orthologs #455. Best score 250 bits
Score difference with first non-orthologous sequence - C.remanei:250 P.jiroveci:250

E3M263              	100.00%		L0P9S5              	100.00%
E3MSR5              	65.82%		
Bootstrap support for E3M263 as seed ortholog is 100%.
Bootstrap support for L0P9S5 as seed ortholog is 100%.

Group of orthologs #456. Best score 250 bits
Score difference with first non-orthologous sequence - C.remanei:250 P.jiroveci:83

E3LM22              	100.00%		L0PA63              	100.00%
Bootstrap support for E3LM22 as seed ortholog is 100%.
Bootstrap support for L0PA63 as seed ortholog is 96%.

Group of orthologs #457. Best score 250 bits
Score difference with first non-orthologous sequence - C.remanei:250 P.jiroveci:250

E3LMX3              	100.00%		L0PBM4              	100.00%
Bootstrap support for E3LMX3 as seed ortholog is 100%.
Bootstrap support for L0PBM4 as seed ortholog is 100%.

Group of orthologs #458. Best score 249 bits
Score difference with first non-orthologous sequence - C.remanei:15 P.jiroveci:209

E3MA33              	100.00%		L0PC75              	100.00%
Bootstrap support for E3MA33 as seed ortholog is 74%.
Alternative seed ortholog is E3MA18 (15 bits away from this cluster)
Bootstrap support for L0PC75 as seed ortholog is 100%.

Group of orthologs #459. Best score 249 bits
Score difference with first non-orthologous sequence - C.remanei:249 P.jiroveci:249

E3MI14              	100.00%		L0P8N3              	100.00%
Bootstrap support for E3MI14 as seed ortholog is 100%.
Bootstrap support for L0P8N3 as seed ortholog is 100%.

Group of orthologs #460. Best score 249 bits
Score difference with first non-orthologous sequence - C.remanei:36 P.jiroveci:249

E3NSD0              	100.00%		L0PGH3              	100.00%
Bootstrap support for E3NSD0 as seed ortholog is 88%.
Bootstrap support for L0PGH3 as seed ortholog is 100%.

Group of orthologs #461. Best score 248 bits
Score difference with first non-orthologous sequence - C.remanei:248 P.jiroveci:248

E3MFI2              	100.00%		L0PCH0              	100.00%
E3LN77              	13.66%		
E3NCB8              	5.31%		
Bootstrap support for E3MFI2 as seed ortholog is 100%.
Bootstrap support for L0PCH0 as seed ortholog is 100%.

Group of orthologs #462. Best score 248 bits
Score difference with first non-orthologous sequence - C.remanei:248 P.jiroveci:248

E3LQM7              	100.00%		L0PF71              	100.00%
Bootstrap support for E3LQM7 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #463. Best score 248 bits
Score difference with first non-orthologous sequence - C.remanei:248 P.jiroveci:248

E3MZR4              	100.00%		L0PEI4              	100.00%
Bootstrap support for E3MZR4 as seed ortholog is 100%.
Bootstrap support for L0PEI4 as seed ortholog is 100%.

Group of orthologs #464. Best score 248 bits
Score difference with first non-orthologous sequence - C.remanei:248 P.jiroveci:248

E3NDX9              	100.00%		L0P9C4              	100.00%
Bootstrap support for E3NDX9 as seed ortholog is 100%.
Bootstrap support for L0P9C4 as seed ortholog is 100%.

Group of orthologs #465. Best score 247 bits
Score difference with first non-orthologous sequence - C.remanei:139 P.jiroveci:157

E3M7N5              	100.00%		L0P876              	100.00%
Bootstrap support for E3M7N5 as seed ortholog is 100%.
Bootstrap support for L0P876 as seed ortholog is 100%.

Group of orthologs #466. Best score 247 bits
Score difference with first non-orthologous sequence - C.remanei:247 P.jiroveci:247

E3MQV0              	100.00%		L0P723              	100.00%
Bootstrap support for E3MQV0 as seed ortholog is 100%.
Bootstrap support for L0P723 as seed ortholog is 100%.

Group of orthologs #467. Best score 245 bits
Score difference with first non-orthologous sequence - C.remanei:160 P.jiroveci:245

E3LSE2              	100.00%		L0PDT4              	100.00%
Bootstrap support for E3LSE2 as seed ortholog is 99%.
Bootstrap support for L0PDT4 as seed ortholog is 100%.

Group of orthologs #468. Best score 245 bits
Score difference with first non-orthologous sequence - C.remanei:245 P.jiroveci:245

E3LX51              	100.00%		L0PF79              	100.00%
Bootstrap support for E3LX51 as seed ortholog is 100%.
Bootstrap support for L0PF79 as seed ortholog is 100%.

Group of orthologs #469. Best score 245 bits
Score difference with first non-orthologous sequence - C.remanei:199 P.jiroveci:245

E3M7S5              	100.00%		L0PG86              	100.00%
Bootstrap support for E3M7S5 as seed ortholog is 100%.
Bootstrap support for L0PG86 as seed ortholog is 100%.

Group of orthologs #470. Best score 244 bits
Score difference with first non-orthologous sequence - C.remanei:244 P.jiroveci:244

E3M3X2              	100.00%		L0PCY0              	100.00%
Bootstrap support for E3M3X2 as seed ortholog is 100%.
Bootstrap support for L0PCY0 as seed ortholog is 100%.

Group of orthologs #471. Best score 243 bits
Score difference with first non-orthologous sequence - C.remanei:243 P.jiroveci:243

E3N5R2              	100.00%		L0P6P2              	100.00%
E3NTD4              	50.85%		
Bootstrap support for E3N5R2 as seed ortholog is 100%.
Bootstrap support for L0P6P2 as seed ortholog is 100%.

Group of orthologs #472. Best score 243 bits
Score difference with first non-orthologous sequence - C.remanei:243 P.jiroveci:243

E3LUY9              	100.00%		L0PFK7              	100.00%
Bootstrap support for E3LUY9 as seed ortholog is 100%.
Bootstrap support for L0PFK7 as seed ortholog is 100%.

Group of orthologs #473. Best score 242 bits
Score difference with first non-orthologous sequence - C.remanei:178 P.jiroveci:242

E3M7Y8              	100.00%		L0PEX9              	100.00%
Bootstrap support for E3M7Y8 as seed ortholog is 100%.
Bootstrap support for L0PEX9 as seed ortholog is 100%.

Group of orthologs #474. Best score 242 bits
Score difference with first non-orthologous sequence - C.remanei:242 P.jiroveci:242

E3NAX9              	100.00%		L0PCK3              	100.00%
Bootstrap support for E3NAX9 as seed ortholog is 100%.
Bootstrap support for L0PCK3 as seed ortholog is 100%.

Group of orthologs #475. Best score 241 bits
Score difference with first non-orthologous sequence - C.remanei:241 P.jiroveci:241

E3LY53              	100.00%		L0PG08              	100.00%
Bootstrap support for E3LY53 as seed ortholog is 100%.
Bootstrap support for L0PG08 as seed ortholog is 100%.

Group of orthologs #476. Best score 241 bits
Score difference with first non-orthologous sequence - C.remanei:241 P.jiroveci:241

E3N2P3              	100.00%		L0PEV9              	100.00%
Bootstrap support for E3N2P3 as seed ortholog is 100%.
Bootstrap support for L0PEV9 as seed ortholog is 100%.

Group of orthologs #477. Best score 240 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:83

E3NH51              	100.00%		L0PGE5              	100.00%
E3NIA0              	14.67%		
E3NMU6              	12.67%		
Bootstrap support for E3NH51 as seed ortholog is 99%.
Bootstrap support for L0PGE5 as seed ortholog is 99%.

Group of orthologs #478. Best score 240 bits
Score difference with first non-orthologous sequence - C.remanei:240 P.jiroveci:240

E3LSA7              	100.00%		L0PED5              	100.00%
Bootstrap support for E3LSA7 as seed ortholog is 100%.
Bootstrap support for L0PED5 as seed ortholog is 100%.

Group of orthologs #479. Best score 240 bits
Score difference with first non-orthologous sequence - C.remanei:240 P.jiroveci:240

E3M3X4              	100.00%		L0PAM5              	100.00%
Bootstrap support for E3M3X4 as seed ortholog is 100%.
Bootstrap support for L0PAM5 as seed ortholog is 100%.

Group of orthologs #480. Best score 240 bits
Score difference with first non-orthologous sequence - C.remanei:240 P.jiroveci:240

E3M8I3              	100.00%		L0PGC4              	100.00%
Bootstrap support for E3M8I3 as seed ortholog is 100%.
Bootstrap support for L0PGC4 as seed ortholog is 100%.

Group of orthologs #481. Best score 239 bits
Score difference with first non-orthologous sequence - C.remanei:11 P.jiroveci:4

E3M909              	100.00%		L0PAI9              	100.00%
E3LMG7              	70.31%		
Bootstrap support for E3M909 as seed ortholog is 63%.
Alternative seed ortholog is E3MNA5 (11 bits away from this cluster)
Bootstrap support for L0PAI9 as seed ortholog is 46%.
Alternative seed ortholog is L0PAX8 (4 bits away from this cluster)

Group of orthologs #482. Best score 239 bits
Score difference with first non-orthologous sequence - C.remanei:239 P.jiroveci:239

E3MS86              	100.00%		L0PAL6              	100.00%
E3MS85              	69.24%		
Bootstrap support for E3MS86 as seed ortholog is 100%.
Bootstrap support for L0PAL6 as seed ortholog is 100%.

Group of orthologs #483. Best score 239 bits
Score difference with first non-orthologous sequence - C.remanei:239 P.jiroveci:239

E3LGN4              	100.00%		L0PBB0              	100.00%
Bootstrap support for E3LGN4 as seed ortholog is 100%.
Bootstrap support for L0PBB0 as seed ortholog is 100%.

Group of orthologs #484. Best score 239 bits
Score difference with first non-orthologous sequence - C.remanei:151 P.jiroveci:239

E3MG96              	100.00%		L0PBD0              	100.00%
Bootstrap support for E3MG96 as seed ortholog is 99%.
Bootstrap support for L0PBD0 as seed ortholog is 100%.

Group of orthologs #485. Best score 239 bits
Score difference with first non-orthologous sequence - C.remanei:239 P.jiroveci:239

E3N6Q1              	100.00%		L0PD41              	100.00%
Bootstrap support for E3N6Q1 as seed ortholog is 100%.
Bootstrap support for L0PD41 as seed ortholog is 100%.

Group of orthologs #486. Best score 239 bits
Score difference with first non-orthologous sequence - C.remanei:239 P.jiroveci:239

E3NHX6              	100.00%		L0P8L5              	100.00%
Bootstrap support for E3NHX6 as seed ortholog is 100%.
Bootstrap support for L0P8L5 as seed ortholog is 100%.

Group of orthologs #487. Best score 238 bits
Score difference with first non-orthologous sequence - C.remanei:238 P.jiroveci:238

E3LPS4              	100.00%		L0PGG0              	100.00%
Bootstrap support for E3LPS4 as seed ortholog is 100%.
Bootstrap support for L0PGG0 as seed ortholog is 100%.

Group of orthologs #488. Best score 238 bits
Score difference with first non-orthologous sequence - C.remanei:238 P.jiroveci:238

E3LVJ7              	100.00%		L0PB03              	100.00%
Bootstrap support for E3LVJ7 as seed ortholog is 100%.
Bootstrap support for L0PB03 as seed ortholog is 100%.

Group of orthologs #489. Best score 237 bits
Score difference with first non-orthologous sequence - C.remanei:237 P.jiroveci:120

E3LYQ3              	100.00%		L0PEG1              	100.00%
Bootstrap support for E3LYQ3 as seed ortholog is 100%.
Bootstrap support for L0PEG1 as seed ortholog is 99%.

Group of orthologs #490. Best score 237 bits
Score difference with first non-orthologous sequence - C.remanei:237 P.jiroveci:190

E3MIC4              	100.00%		L0PC30              	100.00%
Bootstrap support for E3MIC4 as seed ortholog is 100%.
Bootstrap support for L0PC30 as seed ortholog is 100%.

Group of orthologs #491. Best score 237 bits
Score difference with first non-orthologous sequence - C.remanei:237 P.jiroveci:237

E3MK94              	100.00%		L0PDL6              	100.00%
Bootstrap support for E3MK94 as seed ortholog is 100%.
Bootstrap support for L0PDL6 as seed ortholog is 100%.

Group of orthologs #492. Best score 237 bits
Score difference with first non-orthologous sequence - C.remanei:237 P.jiroveci:237

E3MVI1              	100.00%		L0P7B5              	100.00%
Bootstrap support for E3MVI1 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #493. Best score 236 bits
Score difference with first non-orthologous sequence - C.remanei:187 P.jiroveci:236

E3N2P4              	100.00%		L0PET2              	100.00%
                    	       		L0PAE5              	85.53%
Bootstrap support for E3N2P4 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 100%.

Group of orthologs #494. Best score 236 bits
Score difference with first non-orthologous sequence - C.remanei:236 P.jiroveci:236

E3M4K8              	100.00%		L0PDJ2              	100.00%
Bootstrap support for E3M4K8 as seed ortholog is 100%.
Bootstrap support for L0PDJ2 as seed ortholog is 100%.

Group of orthologs #495. Best score 236 bits
Score difference with first non-orthologous sequence - C.remanei:60 P.jiroveci:165

E3MA10              	100.00%		L0PEF1              	100.00%
Bootstrap support for E3MA10 as seed ortholog is 97%.
Bootstrap support for L0PEF1 as seed ortholog is 99%.

Group of orthologs #496. Best score 235 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:235

E3M6P2              	100.00%		L0PCF4              	100.00%
E3M6P1              	97.71%		L0P926              	59.53%
E3M6P0              	88.23%		
E3M6N9              	42.29%		
E3NUC3              	35.31%		
E3MXT2              	18.12%		
Bootstrap support for E3M6P2 as seed ortholog is 91%.
Bootstrap support for L0PCF4 as seed ortholog is 100%.

Group of orthologs #497. Best score 235 bits
Score difference with first non-orthologous sequence - C.remanei:235 P.jiroveci:60

E3LYC1              	100.00%		L0PAQ7              	100.00%
Bootstrap support for E3LYC1 as seed ortholog is 100%.
Bootstrap support for L0PAQ7 as seed ortholog is 98%.

Group of orthologs #498. Best score 235 bits
Score difference with first non-orthologous sequence - C.remanei:107 P.jiroveci:235

E3N6Y8              	100.00%		L0PEX1              	100.00%
Bootstrap support for E3N6Y8 as seed ortholog is 99%.
Bootstrap support for L0PEX1 as seed ortholog is 100%.

Group of orthologs #499. Best score 234 bits
Score difference with first non-orthologous sequence - C.remanei:234 P.jiroveci:234

E3MMM5              	100.00%		L0PGD7              	100.00%
E3LYR6              	40.84%		L0PGQ0              	61.69%
Bootstrap support for E3MMM5 as seed ortholog is 100%.
Bootstrap support for L0PGD7 as seed ortholog is 100%.

Group of orthologs #500. Best score 233 bits
Score difference with first non-orthologous sequence - C.remanei:154 P.jiroveci:233

E3N371              	100.00%		L0PBT9              	100.00%
                    	       		L0P9Y0              	47.19%
Bootstrap support for E3N371 as seed ortholog is 100%.
Bootstrap support for L0PBT9 as seed ortholog is 100%.

Group of orthologs #501. Best score 233 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:162

E3M910              	100.00%		L0PA17              	100.00%
Bootstrap support for E3M910 as seed ortholog is 99%.
Bootstrap support for L0PA17 as seed ortholog is 100%.

Group of orthologs #502. Best score 232 bits
Score difference with first non-orthologous sequence - C.remanei:130 P.jiroveci:232

E3LRM6              	100.00%		L0P865              	100.00%
Bootstrap support for E3LRM6 as seed ortholog is 99%.
Bootstrap support for L0P865 as seed ortholog is 100%.

Group of orthologs #503. Best score 232 bits
Score difference with first non-orthologous sequence - C.remanei:77 P.jiroveci:87

E3LXB6              	100.00%		L0PBM6              	100.00%
Bootstrap support for E3LXB6 as seed ortholog is 93%.
Bootstrap support for L0PBM6 as seed ortholog is 95%.

Group of orthologs #504. Best score 231 bits
Score difference with first non-orthologous sequence - C.remanei:231 P.jiroveci:231

E3LVS5              	100.00%		L0PES4              	100.00%
E3NB26              	72.34%		
Bootstrap support for E3LVS5 as seed ortholog is 100%.
Bootstrap support for L0PES4 as seed ortholog is 100%.

Group of orthologs #505. Best score 231 bits
Score difference with first non-orthologous sequence - C.remanei:231 P.jiroveci:231

E3LVZ0              	100.00%		L0PFS8              	100.00%
Bootstrap support for E3LVZ0 as seed ortholog is 100%.
Bootstrap support for L0PFS8 as seed ortholog is 100%.

Group of orthologs #506. Best score 231 bits
Score difference with first non-orthologous sequence - C.remanei:231 P.jiroveci:231

E3MVF0              	100.00%		L0PD44              	100.00%
Bootstrap support for E3MVF0 as seed ortholog is 100%.
Bootstrap support for L0PD44 as seed ortholog is 100%.

Group of orthologs #507. Best score 231 bits
Score difference with first non-orthologous sequence - C.remanei:231 P.jiroveci:231

E3NCU8              	100.00%		L0PAD9              	100.00%
Bootstrap support for E3NCU8 as seed ortholog is 100%.
Bootstrap support for L0PAD9 as seed ortholog is 100%.

Group of orthologs #508. Best score 229 bits
Score difference with first non-orthologous sequence - C.remanei:229 P.jiroveci:229

E3LUB3              	100.00%		L0PE17              	100.00%
Bootstrap support for E3LUB3 as seed ortholog is 100%.
Bootstrap support for L0PE17 as seed ortholog is 100%.

Group of orthologs #509. Best score 229 bits
Score difference with first non-orthologous sequence - C.remanei:229 P.jiroveci:229

E3LX21              	100.00%		L0PE61              	100.00%
Bootstrap support for E3LX21 as seed ortholog is 100%.
Bootstrap support for L0PE61 as seed ortholog is 100%.

Group of orthologs #510. Best score 228 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:228

E3LK34              	100.00%		L0PAL9              	100.00%
                    	       		L0PBY7              	44.29%
Bootstrap support for E3LK34 as seed ortholog is 100%.
Bootstrap support for L0PAL9 as seed ortholog is 100%.

Group of orthologs #511. Best score 228 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:228

E3LKT9              	100.00%		L0PFC0              	100.00%
E3LKL8              	84.66%		
Bootstrap support for E3LKT9 as seed ortholog is 100%.
Bootstrap support for L0PFC0 as seed ortholog is 100%.

Group of orthologs #512. Best score 228 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:228

E3MVK8              	100.00%		L0PE74              	100.00%
E3MF12              	21.25%		
Bootstrap support for E3MVK8 as seed ortholog is 100%.
Bootstrap support for L0PE74 as seed ortholog is 100%.

Group of orthologs #513. Best score 228 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:228

E3LR21              	100.00%		L0PBB3              	100.00%
Bootstrap support for E3LR21 as seed ortholog is 100%.
Bootstrap support for L0PBB3 as seed ortholog is 100%.

Group of orthologs #514. Best score 228 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:228

E3LY40              	100.00%		L0PAA3              	100.00%
Bootstrap support for E3LY40 as seed ortholog is 100%.
Bootstrap support for L0PAA3 as seed ortholog is 100%.

Group of orthologs #515. Best score 228 bits
Score difference with first non-orthologous sequence - C.remanei:228 P.jiroveci:228

E3LVB5              	100.00%		L0PDX6              	100.00%
Bootstrap support for E3LVB5 as seed ortholog is 100%.
Bootstrap support for L0PDX6 as seed ortholog is 100%.

Group of orthologs #516. Best score 227 bits
Score difference with first non-orthologous sequence - C.remanei:227 P.jiroveci:156

E3NHF2              	100.00%		L0PG93              	100.00%
Bootstrap support for E3NHF2 as seed ortholog is 100%.
Bootstrap support for L0PG93 as seed ortholog is 99%.

Group of orthologs #517. Best score 225 bits
Score difference with first non-orthologous sequence - C.remanei:225 P.jiroveci:225

E3M4D2              	100.00%		L0PAI0              	100.00%
Bootstrap support for E3M4D2 as seed ortholog is 100%.
Bootstrap support for L0PAI0 as seed ortholog is 100%.

Group of orthologs #518. Best score 225 bits
Score difference with first non-orthologous sequence - C.remanei:225 P.jiroveci:225

E3MT28              	100.00%		L0PHL1              	100.00%
Bootstrap support for E3MT28 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #519. Best score 224 bits
Score difference with first non-orthologous sequence - C.remanei:224 P.jiroveci:94

E3LVK3              	100.00%		L0PG34              	100.00%
E3LVW8              	79.28%		
E3LF88              	6.01%		
Bootstrap support for E3LVK3 as seed ortholog is 100%.
Bootstrap support for L0PG34 as seed ortholog is 98%.

Group of orthologs #520. Best score 224 bits
Score difference with first non-orthologous sequence - C.remanei:224 P.jiroveci:224

E3LS76              	100.00%		L0PDR6              	100.00%
Bootstrap support for E3LS76 as seed ortholog is 100%.
Bootstrap support for L0PDR6 as seed ortholog is 100%.

Group of orthologs #521. Best score 224 bits
Score difference with first non-orthologous sequence - C.remanei:224 P.jiroveci:224

E3N8M1              	100.00%		L0PGQ4              	100.00%
Bootstrap support for E3N8M1 as seed ortholog is 100%.
Bootstrap support for L0PGQ4 as seed ortholog is 100%.

Group of orthologs #522. Best score 223 bits
Score difference with first non-orthologous sequence - C.remanei:223 P.jiroveci:223

E3LVG1              	100.00%		L0PAG1              	100.00%
Bootstrap support for E3LVG1 as seed ortholog is 100%.
Bootstrap support for L0PAG1 as seed ortholog is 100%.

Group of orthologs #523. Best score 222 bits
Score difference with first non-orthologous sequence - C.remanei:222 P.jiroveci:222

E3LH27              	100.00%		L0P9T5              	100.00%
Bootstrap support for E3LH27 as seed ortholog is 100%.
Bootstrap support for L0P9T5 as seed ortholog is 100%.

Group of orthologs #524. Best score 222 bits
Score difference with first non-orthologous sequence - C.remanei:140 P.jiroveci:129

E3MM37              	100.00%		L0PFY7              	100.00%
Bootstrap support for E3MM37 as seed ortholog is 100%.
Bootstrap support for L0PFY7 as seed ortholog is 99%.

Group of orthologs #525. Best score 222 bits
Score difference with first non-orthologous sequence - C.remanei:222 P.jiroveci:222

E3MWZ2              	100.00%		L0P9B6              	100.00%
Bootstrap support for E3MWZ2 as seed ortholog is 100%.
Bootstrap support for L0P9B6 as seed ortholog is 100%.

Group of orthologs #526. Best score 221 bits
Score difference with first non-orthologous sequence - C.remanei:221 P.jiroveci:221

E3LLS1              	100.00%		L0PCR8              	100.00%
                    	       		L0PH75              	91.28%
Bootstrap support for E3LLS1 as seed ortholog is 100%.
Bootstrap support for L0PCR8 as seed ortholog is 100%.

Group of orthologs #527. Best score 221 bits
Score difference with first non-orthologous sequence - C.remanei:120 P.jiroveci:137

A8IKQ2              	100.00%		L0P9F9              	100.00%
Bootstrap support for A8IKQ2 as seed ortholog is 100%.
Bootstrap support for L0P9F9 as seed ortholog is 100%.

Group of orthologs #528. Best score 220 bits
Score difference with first non-orthologous sequence - C.remanei:122 P.jiroveci:220

E3MLC9              	100.00%		L0P9N2              	100.00%
E3MSQ8              	78.53%		
E3MLD4              	57.33%		
Bootstrap support for E3MLC9 as seed ortholog is 99%.
Bootstrap support for L0P9N2 as seed ortholog is 100%.

Group of orthologs #529. Best score 220 bits
Score difference with first non-orthologous sequence - C.remanei:220 P.jiroveci:220

E3LUX6              	100.00%		L0PEY9              	100.00%
E3ML37              	77.84%		
Bootstrap support for E3LUX6 as seed ortholog is 100%.
Bootstrap support for L0PEY9 as seed ortholog is 100%.

Group of orthologs #530. Best score 220 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:120

E3LY78              	100.00%		L0PB10              	100.00%
Bootstrap support for E3LY78 as seed ortholog is 97%.
Bootstrap support for L0PB10 as seed ortholog is 99%.

Group of orthologs #531. Best score 220 bits
Score difference with first non-orthologous sequence - C.remanei:220 P.jiroveci:165

E3M3Z8              	100.00%		L0P8I1              	100.00%
Bootstrap support for E3M3Z8 as seed ortholog is 100%.
Bootstrap support for L0P8I1 as seed ortholog is 99%.

Group of orthologs #532. Best score 219 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:120

E3M581              	100.00%		L0PBF6              	100.00%
E3NPL1              	99.48%		
Bootstrap support for E3M581 as seed ortholog is 99%.
Bootstrap support for L0PBF6 as seed ortholog is 99%.

Group of orthologs #533. Best score 219 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:219

E3NIU2              	100.00%		L0PEM3              	100.00%
Bootstrap support for E3NIU2 as seed ortholog is 99%.
Bootstrap support for L0PEM3 as seed ortholog is 100%.

Group of orthologs #534. Best score 218 bits
Score difference with first non-orthologous sequence - C.remanei:218 P.jiroveci:19

E3LRV8              	100.00%		L0PD43              	100.00%
Bootstrap support for E3LRV8 as seed ortholog is 100%.
Bootstrap support for L0PD43 as seed ortholog is 75%.

Group of orthologs #535. Best score 218 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:137

E3LSB3              	100.00%		L0PHH9              	100.00%
Bootstrap support for E3LSB3 as seed ortholog is 99%.
Bootstrap support for L0PHH9 as seed ortholog is 100%.

Group of orthologs #536. Best score 218 bits
Score difference with first non-orthologous sequence - C.remanei:218 P.jiroveci:218

E3NEN2              	100.00%		L0PE58              	100.00%
Bootstrap support for E3NEN2 as seed ortholog is 100%.
Bootstrap support for L0PE58 as seed ortholog is 100%.

Group of orthologs #537. Best score 217 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:217

E3LSU8              	100.00%		L0PDT8              	100.00%
                    	       		L0P9R2              	91.06%
Bootstrap support for E3LSU8 as seed ortholog is 99%.
Bootstrap support for L0PDT8 as seed ortholog is 100%.

Group of orthologs #538. Best score 217 bits
Score difference with first non-orthologous sequence - C.remanei:168 P.jiroveci:217

E3N412              	100.00%		L0PB61              	100.00%
Bootstrap support for E3N412 as seed ortholog is 99%.
Bootstrap support for L0PB61 as seed ortholog is 100%.

Group of orthologs #539. Best score 214 bits
Score difference with first non-orthologous sequence - C.remanei:214 P.jiroveci:214

E3MST0              	100.00%		L0PFP0              	100.00%
E3N6F2              	56.28%		
Bootstrap support for E3MST0 as seed ortholog is 100%.
Bootstrap support for L0PFP0 as seed ortholog is 100%.

Group of orthologs #540. Best score 214 bits
Score difference with first non-orthologous sequence - C.remanei:214 P.jiroveci:214

E3LTC5              	100.00%		L0P914              	100.00%
Bootstrap support for E3LTC5 as seed ortholog is 100%.
Bootstrap support for L0P914 as seed ortholog is 100%.

Group of orthologs #541. Best score 214 bits
Score difference with first non-orthologous sequence - C.remanei:129 P.jiroveci:214

E3ML16              	100.00%		L0P8J0              	100.00%
Bootstrap support for E3ML16 as seed ortholog is 100%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #542. Best score 213 bits
Score difference with first non-orthologous sequence - C.remanei:213 P.jiroveci:213

E3NAT7              	100.00%		L0PCU0              	100.00%
Bootstrap support for E3NAT7 as seed ortholog is 100%.
Bootstrap support for L0PCU0 as seed ortholog is 100%.

Group of orthologs #543. Best score 212 bits
Score difference with first non-orthologous sequence - C.remanei:132 P.jiroveci:212

E3M7Q6              	100.00%		L0PAW4              	100.00%
E3NGA5              	52.01%		
E3M3U9              	48.49%		
E3LNL6              	35.45%		
Bootstrap support for E3M7Q6 as seed ortholog is 99%.
Bootstrap support for L0PAW4 as seed ortholog is 100%.

Group of orthologs #544. Best score 212 bits
Score difference with first non-orthologous sequence - C.remanei:212 P.jiroveci:155

E3LUS9              	100.00%		L0PB00              	100.00%
Bootstrap support for E3LUS9 as seed ortholog is 100%.
Bootstrap support for L0PB00 as seed ortholog is 99%.

Group of orthologs #545. Best score 212 bits
Score difference with first non-orthologous sequence - C.remanei:42 P.jiroveci:212

E3M418              	100.00%		L0PGN2              	100.00%
Bootstrap support for E3M418 as seed ortholog is 81%.
Bootstrap support for L0PGN2 as seed ortholog is 100%.

Group of orthologs #546. Best score 211 bits
Score difference with first non-orthologous sequence - C.remanei:211 P.jiroveci:211

E3M6B2              	100.00%		L0PBZ6              	100.00%
Bootstrap support for E3M6B2 as seed ortholog is 100%.
Bootstrap support for L0PBZ6 as seed ortholog is 100%.

Group of orthologs #547. Best score 211 bits
Score difference with first non-orthologous sequence - C.remanei:211 P.jiroveci:211

E3NHW9              	100.00%		L0PE77              	100.00%
Bootstrap support for E3NHW9 as seed ortholog is 100%.
Bootstrap support for L0PE77 as seed ortholog is 100%.

Group of orthologs #548. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:100 P.jiroveci:138

E3M3K9              	100.00%		L0PHW8              	100.00%
E3MTN4              	46.01%		
Bootstrap support for E3M3K9 as seed ortholog is 100%.
Bootstrap support for L0PHW8 as seed ortholog is 100%.

Group of orthologs #549. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:210 P.jiroveci:210

E3LE31              	100.00%		L0PBV8              	100.00%
Bootstrap support for E3LE31 as seed ortholog is 100%.
Bootstrap support for L0PBV8 as seed ortholog is 100%.

Group of orthologs #550. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:210 P.jiroveci:210

E3LFA7              	100.00%		L0PHK5              	100.00%
Bootstrap support for E3LFA7 as seed ortholog is 100%.
Bootstrap support for L0PHK5 as seed ortholog is 100%.

Group of orthologs #551. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:210 P.jiroveci:210

E3M357              	100.00%		L0PHK8              	100.00%
Bootstrap support for E3M357 as seed ortholog is 100%.
Bootstrap support for L0PHK8 as seed ortholog is 100%.

Group of orthologs #552. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:210 P.jiroveci:210

E3M435              	100.00%		L0PIV4              	100.00%
Bootstrap support for E3M435 as seed ortholog is 100%.
Bootstrap support for L0PIV4 as seed ortholog is 100%.

Group of orthologs #553. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:104

E3MBJ6              	100.00%		L0PFN2              	100.00%
Bootstrap support for E3MBJ6 as seed ortholog is 99%.
Bootstrap support for L0PFN2 as seed ortholog is 100%.

Group of orthologs #554. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:210 P.jiroveci:210

E3MLC1              	100.00%		L0PF44              	100.00%
Bootstrap support for E3MLC1 as seed ortholog is 100%.
Bootstrap support for L0PF44 as seed ortholog is 100%.

Group of orthologs #555. Best score 209 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:76

E3M7C0              	100.00%		L0PDD3              	100.00%
E3NN24              	32.31%		
Bootstrap support for E3M7C0 as seed ortholog is 98%.
Bootstrap support for L0PDD3 as seed ortholog is 99%.

Group of orthologs #556. Best score 209 bits
Score difference with first non-orthologous sequence - C.remanei:159 P.jiroveci:209

E3M6B4              	100.00%		L0PHN0              	100.00%
Bootstrap support for E3M6B4 as seed ortholog is 99%.
Bootstrap support for L0PHN0 as seed ortholog is 100%.

Group of orthologs #557. Best score 209 bits
Score difference with first non-orthologous sequence - C.remanei:209 P.jiroveci:209

E3NAT8              	100.00%		L0PBK1              	100.00%
Bootstrap support for E3NAT8 as seed ortholog is 100%.
Bootstrap support for L0PBK1 as seed ortholog is 100%.

Group of orthologs #558. Best score 208 bits
Score difference with first non-orthologous sequence - C.remanei:208 P.jiroveci:208

E3LWW7              	100.00%		L0PBS5              	100.00%
Bootstrap support for E3LWW7 as seed ortholog is 100%.
Bootstrap support for L0PBS5 as seed ortholog is 100%.

Group of orthologs #559. Best score 208 bits
Score difference with first non-orthologous sequence - C.remanei:208 P.jiroveci:208

E3LZB6              	100.00%		L0PCC1              	100.00%
Bootstrap support for E3LZB6 as seed ortholog is 100%.
Bootstrap support for L0PCC1 as seed ortholog is 100%.

Group of orthologs #560. Best score 208 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:78

E3MNW2              	100.00%		L0PG51              	100.00%
Bootstrap support for E3MNW2 as seed ortholog is 100%.
Bootstrap support for L0PG51 as seed ortholog is 95%.

Group of orthologs #561. Best score 207 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:39

E3NWW4              	100.00%		L0PG16              	100.00%
E3M6V5              	97.27%		
Bootstrap support for E3NWW4 as seed ortholog is 99%.
Bootstrap support for L0PG16 as seed ortholog is 81%.

Group of orthologs #562. Best score 207 bits
Score difference with first non-orthologous sequence - C.remanei:207 P.jiroveci:207

E3LXE8              	100.00%		L0P784              	100.00%
Bootstrap support for E3LXE8 as seed ortholog is 100%.
Bootstrap support for L0P784 as seed ortholog is 100%.

Group of orthologs #563. Best score 207 bits
Score difference with first non-orthologous sequence - C.remanei:155 P.jiroveci:207

E3MFW9              	100.00%		L0PA05              	100.00%
Bootstrap support for E3MFW9 as seed ortholog is 100%.
Bootstrap support for L0PA05 as seed ortholog is 100%.

Group of orthologs #564. Best score 206 bits
Score difference with first non-orthologous sequence - C.remanei:90 P.jiroveci:106

E3LGX5              	100.00%		L0PAM8              	100.00%
Bootstrap support for E3LGX5 as seed ortholog is 98%.
Bootstrap support for L0PAM8 as seed ortholog is 99%.

Group of orthologs #565. Best score 206 bits
Score difference with first non-orthologous sequence - C.remanei:206 P.jiroveci:206

E3LVM8              	100.00%		L0PAE8              	100.00%
Bootstrap support for E3LVM8 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #566. Best score 205 bits
Score difference with first non-orthologous sequence - C.remanei:205 P.jiroveci:205

E3MDR9              	100.00%		L0PHL0              	100.00%
Bootstrap support for E3MDR9 as seed ortholog is 100%.
Bootstrap support for L0PHL0 as seed ortholog is 100%.

Group of orthologs #567. Best score 205 bits
Score difference with first non-orthologous sequence - C.remanei:205 P.jiroveci:205

E3MVS8              	100.00%		L0PBA4              	100.00%
Bootstrap support for E3MVS8 as seed ortholog is 100%.
Bootstrap support for L0PBA4 as seed ortholog is 100%.

Group of orthologs #568. Best score 204 bits
Score difference with first non-orthologous sequence - C.remanei:204 P.jiroveci:204

E3LMC7              	100.00%		L0PCL4              	100.00%
Bootstrap support for E3LMC7 as seed ortholog is 100%.
Bootstrap support for L0PCL4 as seed ortholog is 100%.

Group of orthologs #569. Best score 204 bits
Score difference with first non-orthologous sequence - C.remanei:132 P.jiroveci:204

E3LRC5              	100.00%		L0PBS3              	100.00%
Bootstrap support for E3LRC5 as seed ortholog is 99%.
Bootstrap support for L0PBS3 as seed ortholog is 100%.

Group of orthologs #570. Best score 203 bits
Score difference with first non-orthologous sequence - C.remanei:203 P.jiroveci:203

E3MGJ5              	100.00%		L0PA24              	100.00%
Bootstrap support for E3MGJ5 as seed ortholog is 100%.
Bootstrap support for L0PA24 as seed ortholog is 100%.

Group of orthologs #571. Best score 202 bits
Score difference with first non-orthologous sequence - C.remanei:96 P.jiroveci:202

E3MXT8              	100.00%		L0PIJ3              	100.00%
E3MXU0              	18.25%		L0PEP1              	83.96%
Bootstrap support for E3MXT8 as seed ortholog is 99%.
Bootstrap support for L0PIJ3 as seed ortholog is 100%.

Group of orthologs #572. Best score 202 bits
Score difference with first non-orthologous sequence - C.remanei:202 P.jiroveci:202

E3M908              	100.00%		L0PH55              	100.00%
Bootstrap support for E3M908 as seed ortholog is 100%.
Bootstrap support for L0PH55 as seed ortholog is 100%.

Group of orthologs #573. Best score 202 bits
Score difference with first non-orthologous sequence - C.remanei:202 P.jiroveci:202

E3MNF3              	100.00%		L0P7Q3              	100.00%
Bootstrap support for E3MNF3 as seed ortholog is 100%.
Bootstrap support for L0P7Q3 as seed ortholog is 100%.

Group of orthologs #574. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:201 P.jiroveci:201

E3LFP3              	100.00%		L0PGD6              	100.00%
Bootstrap support for E3LFP3 as seed ortholog is 100%.
Bootstrap support for L0PGD6 as seed ortholog is 100%.

Group of orthologs #575. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:201 P.jiroveci:201

E3LVE4              	100.00%		L0PC18              	100.00%
Bootstrap support for E3LVE4 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #576. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:115 P.jiroveci:201

E3LVJ8              	100.00%		L0PEQ4              	100.00%
Bootstrap support for E3LVJ8 as seed ortholog is 99%.
Bootstrap support for L0PEQ4 as seed ortholog is 100%.

Group of orthologs #577. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:201 P.jiroveci:201

E3M0P5              	100.00%		L0PAR5              	100.00%
Bootstrap support for E3M0P5 as seed ortholog is 100%.
Bootstrap support for L0PAR5 as seed ortholog is 100%.

Group of orthologs #578. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:201 P.jiroveci:201

E3MI29              	100.00%		L0PDH2              	100.00%
Bootstrap support for E3MI29 as seed ortholog is 100%.
Bootstrap support for L0PDH2 as seed ortholog is 100%.

Group of orthologs #579. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:100 P.jiroveci:108

E3NGU3              	100.00%		L0P7B1              	100.00%
Bootstrap support for E3NGU3 as seed ortholog is 100%.
Bootstrap support for L0P7B1 as seed ortholog is 100%.

Group of orthologs #580. Best score 200 bits
Score difference with first non-orthologous sequence - C.remanei:200 P.jiroveci:200

E3LNM1              	100.00%		L0P9B4              	100.00%
E3MXQ1              	45.78%		
Bootstrap support for E3LNM1 as seed ortholog is 100%.
Bootstrap support for L0P9B4 as seed ortholog is 100%.

Group of orthologs #581. Best score 200 bits
Score difference with first non-orthologous sequence - C.remanei:200 P.jiroveci:200

E3LTJ8              	100.00%		L0PBV6              	100.00%
E3MHB8              	55.24%		
Bootstrap support for E3LTJ8 as seed ortholog is 100%.
Bootstrap support for L0PBV6 as seed ortholog is 100%.

Group of orthologs #582. Best score 200 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:200

E3LXR1              	100.00%		L0P863              	100.00%
Bootstrap support for E3LXR1 as seed ortholog is 97%.
Bootstrap support for L0P863 as seed ortholog is 100%.

Group of orthologs #583. Best score 200 bits
Score difference with first non-orthologous sequence - C.remanei:200 P.jiroveci:200

E3M670              	100.00%		L0PB11              	100.00%
Bootstrap support for E3M670 as seed ortholog is 100%.
Bootstrap support for L0PB11 as seed ortholog is 100%.

Group of orthologs #584. Best score 199 bits
Score difference with first non-orthologous sequence - C.remanei:199 P.jiroveci:199

E3LRL4              	100.00%		L0P7C4              	100.00%
E3M635              	62.36%		
Bootstrap support for E3LRL4 as seed ortholog is 100%.
Bootstrap support for L0P7C4 as seed ortholog is 100%.

Group of orthologs #585. Best score 199 bits
Score difference with first non-orthologous sequence - C.remanei:199 P.jiroveci:199

E3M5M5              	100.00%		L0PDP2              	100.00%
E3NQM2              	99.75%		
Bootstrap support for E3M5M5 as seed ortholog is 100%.
Bootstrap support for L0PDP2 as seed ortholog is 100%.

Group of orthologs #586. Best score 199 bits
Score difference with first non-orthologous sequence - C.remanei:199 P.jiroveci:199

E3LRP9              	100.00%		L0P8A6              	100.00%
Bootstrap support for E3LRP9 as seed ortholog is 100%.
Bootstrap support for L0P8A6 as seed ortholog is 100%.

Group of orthologs #587. Best score 199 bits
Score difference with first non-orthologous sequence - C.remanei:199 P.jiroveci:199

E3LYT8              	100.00%		L0PEC6              	100.00%
Bootstrap support for E3LYT8 as seed ortholog is 100%.
Bootstrap support for L0PEC6 as seed ortholog is 100%.

Group of orthologs #588. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3MTY7              	100.00%		L0P9F7              	100.00%
                    	       		L0PGP0              	84.14%
Bootstrap support for E3MTY7 as seed ortholog is 100%.
Bootstrap support for L0P9F7 as seed ortholog is 100%.

Group of orthologs #589. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3LFC8              	100.00%		L0P9U1              	100.00%
Bootstrap support for E3LFC8 as seed ortholog is 100%.
Bootstrap support for L0P9U1 as seed ortholog is 100%.

Group of orthologs #590. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:147 P.jiroveci:198

E3LRP5              	100.00%		L0P9L7              	100.00%
Bootstrap support for E3LRP5 as seed ortholog is 100%.
Bootstrap support for L0P9L7 as seed ortholog is 100%.

Group of orthologs #591. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3LME4              	100.00%		L0PGY0              	100.00%
Bootstrap support for E3LME4 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #592. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3LZF9              	100.00%		L0PBT0              	100.00%
Bootstrap support for E3LZF9 as seed ortholog is 100%.
Bootstrap support for L0PBT0 as seed ortholog is 100%.

Group of orthologs #593. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3MNP9              	100.00%		L0PB66              	100.00%
Bootstrap support for E3MNP9 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #594. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3N356              	100.00%		L0PCG1              	100.00%
Bootstrap support for E3N356 as seed ortholog is 100%.
Bootstrap support for L0PCG1 as seed ortholog is 100%.

Group of orthologs #595. Best score 198 bits
Score difference with first non-orthologous sequence - C.remanei:198 P.jiroveci:198

E3NWU7              	100.00%		L0PAG8              	100.00%
Bootstrap support for E3NWU7 as seed ortholog is 100%.
Bootstrap support for L0PAG8 as seed ortholog is 100%.

Group of orthologs #596. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:95

E3LKS0              	100.00%		L0PAY4              	100.00%
E3LQ58              	100.00%		
E3NKL9              	100.00%		
E3NT38              	100.00%		
E3M7C9              	64.71%		
E3M6T5              	33.33%		
Bootstrap support for E3LKS0 as seed ortholog is 99%.
Bootstrap support for E3LQ58 as seed ortholog is 99%.
Bootstrap support for E3NKL9 as seed ortholog is 99%.
Bootstrap support for E3NT38 as seed ortholog is 99%.
Bootstrap support for L0PAY4 as seed ortholog is 100%.

Group of orthologs #597. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:197 P.jiroveci:197

E3M574              	100.00%		L0PE53              	100.00%
E3NRK7              	57.08%		
E3LDH9              	24.28%		
E3LMH4              	10.32%		
Bootstrap support for E3M574 as seed ortholog is 100%.
Bootstrap support for L0PE53 as seed ortholog is 100%.

Group of orthologs #598. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:153 P.jiroveci:197

E3LF20              	100.00%		L0PDS6              	100.00%
E3LF49              	37.02%		
E3LYM0              	13.08%		
Bootstrap support for E3LF20 as seed ortholog is 100%.
Bootstrap support for L0PDS6 as seed ortholog is 100%.

Group of orthologs #599. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:197 P.jiroveci:197

E3MFN2              	100.00%		L0PH33              	100.00%
E3LXJ9              	17.42%		
Bootstrap support for E3MFN2 as seed ortholog is 100%.
Bootstrap support for L0PH33 as seed ortholog is 100%.

Group of orthologs #600. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:7

E3MYC3              	100.00%		L0PCN5              	100.00%
                    	       		L0P7B6              	92.73%
Bootstrap support for E3MYC3 as seed ortholog is 91%.
Bootstrap support for L0PCN5 as seed ortholog is 55%.
Alternative seed ortholog is L0PGT4 (7 bits away from this cluster)

Group of orthologs #601. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:197

E3NQN8              	100.00%		L0PAA8              	100.00%
E3M737              	19.87%		
Bootstrap support for E3NQN8 as seed ortholog is 99%.
Bootstrap support for L0PAA8 as seed ortholog is 100%.

Group of orthologs #602. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:52 P.jiroveci:197

E3LVG9              	100.00%		L0PC02              	100.00%
Bootstrap support for E3LVG9 as seed ortholog is 87%.
Bootstrap support for L0PC02 as seed ortholog is 100%.

Group of orthologs #603. Best score 197 bits
Score difference with first non-orthologous sequence - C.remanei:197 P.jiroveci:197

E3N1J7              	100.00%		L0P8B2              	100.00%
Bootstrap support for E3N1J7 as seed ortholog is 100%.
Bootstrap support for L0P8B2 as seed ortholog is 100%.

Group of orthologs #604. Best score 196 bits
Score difference with first non-orthologous sequence - C.remanei:127 P.jiroveci:196

E3LM82              	100.00%		L0PH42              	100.00%
Bootstrap support for E3LM82 as seed ortholog is 99%.
Bootstrap support for L0PH42 as seed ortholog is 100%.

Group of orthologs #605. Best score 196 bits
Score difference with first non-orthologous sequence - C.remanei:196 P.jiroveci:196

E3LRZ4              	100.00%		L0PG81              	100.00%
Bootstrap support for E3LRZ4 as seed ortholog is 100%.
Bootstrap support for L0PG81 as seed ortholog is 100%.

Group of orthologs #606. Best score 196 bits
Score difference with first non-orthologous sequence - C.remanei:196 P.jiroveci:75

E3LUT1              	100.00%		L0PDS3              	100.00%
Bootstrap support for E3LUT1 as seed ortholog is 100%.
Bootstrap support for L0PDS3 as seed ortholog is 97%.

Group of orthologs #607. Best score 196 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:196

E3M4K2              	100.00%		L0P9W3              	100.00%
Bootstrap support for E3M4K2 as seed ortholog is 95%.
Bootstrap support for L0P9W3 as seed ortholog is 100%.

Group of orthologs #608. Best score 196 bits
Score difference with first non-orthologous sequence - C.remanei:196 P.jiroveci:196

E3MSW9              	100.00%		L0PGJ6              	100.00%
Bootstrap support for E3MSW9 as seed ortholog is 100%.
Bootstrap support for L0PGJ6 as seed ortholog is 100%.

Group of orthologs #609. Best score 195 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:119

E3MGB2              	100.00%		L0PIS9              	100.00%
E3MVV8              	29.52%		
E3MBM5              	16.30%		
E3M4U9              	5.29%		
Bootstrap support for E3MGB2 as seed ortholog is 97%.
Bootstrap support for L0PIS9 as seed ortholog is 100%.

Group of orthologs #610. Best score 195 bits
Score difference with first non-orthologous sequence - C.remanei:195 P.jiroveci:195

E3M8A7              	100.00%		L0PBE8              	100.00%
Bootstrap support for E3M8A7 as seed ortholog is 100%.
Bootstrap support for L0PBE8 as seed ortholog is 100%.

Group of orthologs #611. Best score 194 bits
Score difference with first non-orthologous sequence - C.remanei:50 P.jiroveci:11

E3NUM4              	100.00%		L0P9R7              	100.00%
Bootstrap support for E3NUM4 as seed ortholog is 96%.
Bootstrap support for L0P9R7 as seed ortholog is 99%.

Group of orthologs #612. Best score 194 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:194

E3NWE7              	100.00%		L0PEZ4              	100.00%
Bootstrap support for E3NWE7 as seed ortholog is 98%.
Bootstrap support for L0PEZ4 as seed ortholog is 100%.

Group of orthologs #613. Best score 193 bits
Score difference with first non-orthologous sequence - C.remanei:4 P.jiroveci:193

E3MB75              	100.00%		L0P7X9              	100.00%
E3MC62              	5.60%		L0PBE2              	83.14%
Bootstrap support for E3MB75 as seed ortholog is 55%.
Alternative seed ortholog is E3LMU3 (4 bits away from this cluster)
Bootstrap support for L0P7X9 as seed ortholog is 100%.

Group of orthologs #614. Best score 191 bits
Score difference with first non-orthologous sequence - C.remanei:191 P.jiroveci:191

E3MUE4              	100.00%		L0PDN4              	100.00%
E3NLV3              	8.35%		
E3MSF4              	7.55%		
Bootstrap support for E3MUE4 as seed ortholog is 100%.
Bootstrap support for L0PDN4 as seed ortholog is 100%.

Group of orthologs #615. Best score 191 bits
Score difference with first non-orthologous sequence - C.remanei:48 P.jiroveci:191

E3LUF0              	100.00%		L0PBL5              	100.00%
E3LUF1              	81.96%		
Bootstrap support for E3LUF0 as seed ortholog is 91%.
Bootstrap support for L0PBL5 as seed ortholog is 100%.

Group of orthologs #616. Best score 191 bits
Score difference with first non-orthologous sequence - C.remanei:191 P.jiroveci:191

E3M706              	100.00%		L0P9N8              	100.00%
E3NX08              	100.00%		
Bootstrap support for E3M706 as seed ortholog is 100%.
Bootstrap support for E3NX08 as seed ortholog is 100%.
Bootstrap support for L0P9N8 as seed ortholog is 100%.

Group of orthologs #617. Best score 191 bits
Score difference with first non-orthologous sequence - C.remanei:19 P.jiroveci:191

E3LFY7              	100.00%		L0PDB8              	100.00%
Bootstrap support for E3LFY7 as seed ortholog is 72%.
Alternative seed ortholog is E3LTL1 (19 bits away from this cluster)
Bootstrap support for L0PDB8 as seed ortholog is 100%.

Group of orthologs #618. Best score 190 bits
Score difference with first non-orthologous sequence - C.remanei:190 P.jiroveci:190

E3N1P7              	100.00%		L0PAJ0              	100.00%
Bootstrap support for E3N1P7 as seed ortholog is 100%.
Bootstrap support for L0PAJ0 as seed ortholog is 100%.

Group of orthologs #619. Best score 190 bits
Score difference with first non-orthologous sequence - C.remanei:190 P.jiroveci:190

E3NLC6              	100.00%		L0P7R5              	100.00%
Bootstrap support for E3NLC6 as seed ortholog is 100%.
Bootstrap support for L0P7R5 as seed ortholog is 100%.

Group of orthologs #620. Best score 189 bits
Score difference with first non-orthologous sequence - C.remanei:189 P.jiroveci:141

E3LHV3              	100.00%		L0PD58              	100.00%
Bootstrap support for E3LHV3 as seed ortholog is 100%.
Bootstrap support for L0PD58 as seed ortholog is 99%.

Group of orthologs #621. Best score 188 bits
Score difference with first non-orthologous sequence - C.remanei:39 P.jiroveci:116

E3LCC6              	100.00%		L0PB47              	100.00%
E3MMQ1              	10.71%		
E3LE83              	6.55%		
Bootstrap support for E3LCC6 as seed ortholog is 84%.
Bootstrap support for L0PB47 as seed ortholog is 99%.

Group of orthologs #622. Best score 188 bits
Score difference with first non-orthologous sequence - C.remanei:188 P.jiroveci:188

E3M0E8              	100.00%		L0PD40              	100.00%
E3M0E9              	21.97%		
Bootstrap support for E3M0E8 as seed ortholog is 100%.
Bootstrap support for L0PD40 as seed ortholog is 100%.

Group of orthologs #623. Best score 188 bits
Score difference with first non-orthologous sequence - C.remanei:188 P.jiroveci:188

E3LG46              	100.00%		L0PCB3              	100.00%
Bootstrap support for E3LG46 as seed ortholog is 100%.
Bootstrap support for L0PCB3 as seed ortholog is 100%.

Group of orthologs #624. Best score 188 bits
Score difference with first non-orthologous sequence - C.remanei:188 P.jiroveci:188

E3M791              	100.00%		L0PC53              	100.00%
Bootstrap support for E3M791 as seed ortholog is 100%.
Bootstrap support for L0PC53 as seed ortholog is 100%.

Group of orthologs #625. Best score 187 bits
Score difference with first non-orthologous sequence - C.remanei:187 P.jiroveci:187

E3LGE9              	100.00%		L0P9M9              	100.00%
Bootstrap support for E3LGE9 as seed ortholog is 100%.
Bootstrap support for L0P9M9 as seed ortholog is 100%.

Group of orthologs #626. Best score 187 bits
Score difference with first non-orthologous sequence - C.remanei:115 P.jiroveci:187

E3LRM0              	100.00%		L0P838              	100.00%
Bootstrap support for E3LRM0 as seed ortholog is 99%.
Bootstrap support for L0P838 as seed ortholog is 100%.

Group of orthologs #627. Best score 187 bits
Score difference with first non-orthologous sequence - C.remanei:187 P.jiroveci:187

E3MWY7              	100.00%		L0P8F0              	100.00%
Bootstrap support for E3MWY7 as seed ortholog is 100%.
Bootstrap support for L0P8F0 as seed ortholog is 100%.

Group of orthologs #628. Best score 187 bits
Score difference with first non-orthologous sequence - C.remanei:142 P.jiroveci:187

E3N1M9              	100.00%		L0PDR1              	100.00%
Bootstrap support for E3N1M9 as seed ortholog is 99%.
Bootstrap support for L0PDR1 as seed ortholog is 100%.

Group of orthologs #629. Best score 186 bits
Score difference with first non-orthologous sequence - C.remanei:186 P.jiroveci:186

E3M6N4              	100.00%		L0P896              	100.00%
E3NS88              	55.11%		
Bootstrap support for E3M6N4 as seed ortholog is 100%.
Bootstrap support for L0P896 as seed ortholog is 100%.

Group of orthologs #630. Best score 186 bits
Score difference with first non-orthologous sequence - C.remanei:186 P.jiroveci:186

E3LSD4              	100.00%		L0P834              	100.00%
Bootstrap support for E3LSD4 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 100%.

Group of orthologs #631. Best score 186 bits
Score difference with first non-orthologous sequence - C.remanei:186 P.jiroveci:186

E3LS97              	100.00%		L0PD35              	100.00%
Bootstrap support for E3LS97 as seed ortholog is 100%.
Bootstrap support for L0PD35 as seed ortholog is 100%.

Group of orthologs #632. Best score 186 bits
Score difference with first non-orthologous sequence - C.remanei:186 P.jiroveci:186

E3MX79              	100.00%		L0PBC5              	100.00%
Bootstrap support for E3MX79 as seed ortholog is 100%.
Bootstrap support for L0PBC5 as seed ortholog is 100%.

Group of orthologs #633. Best score 186 bits
Score difference with first non-orthologous sequence - C.remanei:186 P.jiroveci:186

E3N1M6              	100.00%		L0PCJ2              	100.00%
Bootstrap support for E3N1M6 as seed ortholog is 100%.
Bootstrap support for L0PCJ2 as seed ortholog is 100%.

Group of orthologs #634. Best score 185 bits
Score difference with first non-orthologous sequence - C.remanei:185 P.jiroveci:185

E3LGF5              	100.00%		L0PD65              	100.00%
E3LS88              	57.43%		
Bootstrap support for E3LGF5 as seed ortholog is 100%.
Bootstrap support for L0PD65 as seed ortholog is 100%.

Group of orthologs #635. Best score 185 bits
Score difference with first non-orthologous sequence - C.remanei:51 P.jiroveci:185

E3LUK5              	100.00%		L0PAP9              	100.00%
Bootstrap support for E3LUK5 as seed ortholog is 99%.
Bootstrap support for L0PAP9 as seed ortholog is 100%.

Group of orthologs #636. Best score 185 bits
Score difference with first non-orthologous sequence - C.remanei:185 P.jiroveci:185

E3MI34              	100.00%		L0P746              	100.00%
Bootstrap support for E3MI34 as seed ortholog is 100%.
Bootstrap support for L0P746 as seed ortholog is 100%.

Group of orthologs #637. Best score 185 bits
Score difference with first non-orthologous sequence - C.remanei:83 P.jiroveci:128

E3MFH8              	100.00%		L0PCC3              	100.00%
Bootstrap support for E3MFH8 as seed ortholog is 99%.
Bootstrap support for L0PCC3 as seed ortholog is 99%.

Group of orthologs #638. Best score 185 bits
Score difference with first non-orthologous sequence - C.remanei:185 P.jiroveci:185

E3MCY9              	100.00%		L0PFL8              	100.00%
Bootstrap support for E3MCY9 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #639. Best score 185 bits
Score difference with first non-orthologous sequence - C.remanei:118 P.jiroveci:185

E3N2X9              	100.00%		L0PBL3              	100.00%
Bootstrap support for E3N2X9 as seed ortholog is 99%.
Bootstrap support for L0PBL3 as seed ortholog is 100%.

Group of orthologs #640. Best score 184 bits
Score difference with first non-orthologous sequence - C.remanei:184 P.jiroveci:184

E3LM04              	100.00%		L0P9Z4              	100.00%
Bootstrap support for E3LM04 as seed ortholog is 100%.
Bootstrap support for L0P9Z4 as seed ortholog is 100%.

Group of orthologs #641. Best score 184 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:70

E3LGJ3              	100.00%		L0PGT3              	100.00%
Bootstrap support for E3LGJ3 as seed ortholog is 99%.
Bootstrap support for L0PGT3 as seed ortholog is 99%.

Group of orthologs #642. Best score 184 bits
Score difference with first non-orthologous sequence - C.remanei:134 P.jiroveci:184

E3LQP8              	100.00%		L0PBX0              	100.00%
Bootstrap support for E3LQP8 as seed ortholog is 99%.
Bootstrap support for L0PBX0 as seed ortholog is 100%.

Group of orthologs #643. Best score 184 bits
Score difference with first non-orthologous sequence - C.remanei:88 P.jiroveci:126

E3M8L6              	100.00%		L0PFK0              	100.00%
Bootstrap support for E3M8L6 as seed ortholog is 98%.
Bootstrap support for L0PFK0 as seed ortholog is 99%.

Group of orthologs #644. Best score 183 bits
Score difference with first non-orthologous sequence - C.remanei:183 P.jiroveci:183

E3LRY4              	100.00%		L0PI61              	100.00%
E3MGI8              	55.86%		L0PA50              	26.82%
Bootstrap support for E3LRY4 as seed ortholog is 100%.
Bootstrap support for L0PI61 as seed ortholog is 100%.

Group of orthologs #645. Best score 183 bits
Score difference with first non-orthologous sequence - C.remanei:183 P.jiroveci:183

E3LRF2              	100.00%		L0PCK9              	100.00%
E3NHV3              	38.79%		
Bootstrap support for E3LRF2 as seed ortholog is 100%.
Bootstrap support for L0PCK9 as seed ortholog is 100%.

Group of orthologs #646. Best score 183 bits
Score difference with first non-orthologous sequence - C.remanei:134 P.jiroveci:183

E3MN37              	100.00%		L0P9I3              	100.00%
E3MN17              	10.29%		
Bootstrap support for E3MN37 as seed ortholog is 99%.
Bootstrap support for L0P9I3 as seed ortholog is 100%.

Group of orthologs #647. Best score 183 bits
Score difference with first non-orthologous sequence - C.remanei:183 P.jiroveci:183

E3MFQ4              	100.00%		L0PAJ6              	100.00%
Bootstrap support for E3MFQ4 as seed ortholog is 100%.
Bootstrap support for L0PAJ6 as seed ortholog is 100%.

Group of orthologs #648. Best score 182 bits
Score difference with first non-orthologous sequence - C.remanei:182 P.jiroveci:182

E3MFF0              	100.00%		L0PCZ4              	100.00%
Bootstrap support for E3MFF0 as seed ortholog is 100%.
Bootstrap support for L0PCZ4 as seed ortholog is 100%.

Group of orthologs #649. Best score 181 bits
Score difference with first non-orthologous sequence - C.remanei:181 P.jiroveci:181

E3M687              	100.00%		L0P8T4              	100.00%
Bootstrap support for E3M687 as seed ortholog is 100%.
Bootstrap support for L0P8T4 as seed ortholog is 100%.

Group of orthologs #650. Best score 181 bits
Score difference with first non-orthologous sequence - C.remanei:181 P.jiroveci:181

E3M3S3              	100.00%		L0PCJ8              	100.00%
Bootstrap support for E3M3S3 as seed ortholog is 100%.
Bootstrap support for L0PCJ8 as seed ortholog is 100%.

Group of orthologs #651. Best score 181 bits
Score difference with first non-orthologous sequence - C.remanei:181 P.jiroveci:181

E3NKC4              	100.00%		L0PDW5              	100.00%
Bootstrap support for E3NKC4 as seed ortholog is 100%.
Bootstrap support for L0PDW5 as seed ortholog is 100%.

Group of orthologs #652. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:180 P.jiroveci:180

E3LTA6              	100.00%		L0P9Y2              	100.00%
Bootstrap support for E3LTA6 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #653. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:21

E3LYZ2              	100.00%		L0PFI0              	100.00%
Bootstrap support for E3LYZ2 as seed ortholog is 94%.
Bootstrap support for L0PFI0 as seed ortholog is 66%.
Alternative seed ortholog is L0PAG6 (21 bits away from this cluster)

Group of orthologs #654. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:180 P.jiroveci:180

E3M650              	100.00%		L0PAC1              	100.00%
Bootstrap support for E3M650 as seed ortholog is 100%.
Bootstrap support for L0PAC1 as seed ortholog is 100%.

Group of orthologs #655. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:83 P.jiroveci:180

E3MVD7              	100.00%		L0PA51              	100.00%
Bootstrap support for E3MVD7 as seed ortholog is 99%.
Bootstrap support for L0PA51 as seed ortholog is 100%.

Group of orthologs #656. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:180 P.jiroveci:180

E3MW94              	100.00%		L0P9D6              	100.00%
Bootstrap support for E3MW94 as seed ortholog is 100%.
Bootstrap support for L0P9D6 as seed ortholog is 100%.

Group of orthologs #657. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:95

E3N5V0              	100.00%		L0PAS2              	100.00%
Bootstrap support for E3N5V0 as seed ortholog is 99%.
Bootstrap support for L0PAS2 as seed ortholog is 99%.

Group of orthologs #658. Best score 179 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:115

E3MCH7              	100.00%		L0P8M4              	100.00%
E3MG99              	27.09%		
Bootstrap support for E3MCH7 as seed ortholog is 95%.
Bootstrap support for L0P8M4 as seed ortholog is 100%.

Group of orthologs #659. Best score 179 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:179

E3LSF8              	100.00%		L0P701              	100.00%
Bootstrap support for E3LSF8 as seed ortholog is 99%.
Bootstrap support for L0P701 as seed ortholog is 100%.

Group of orthologs #660. Best score 179 bits
Score difference with first non-orthologous sequence - C.remanei:179 P.jiroveci:179

E3MMT5              	100.00%		L0PEN7              	100.00%
Bootstrap support for E3MMT5 as seed ortholog is 100%.
Bootstrap support for L0PEN7 as seed ortholog is 100%.

Group of orthologs #661. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:84 P.jiroveci:178

E3LK32              	100.00%		L0P848              	100.00%
E3MVS0              	62.73%		L0P867              	90.44%
E3N4G9              	56.06%		
E3MLQ4              	55.75%		
Bootstrap support for E3LK32 as seed ortholog is 98%.
Bootstrap support for L0P848 as seed ortholog is 100%.

Group of orthologs #662. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:130 P.jiroveci:127

E3M533              	100.00%		L0P895              	100.00%
E3NTF3              	78.42%		
E3NTF4              	7.47%		
E3M532              	7.26%		
Bootstrap support for E3M533 as seed ortholog is 99%.
Bootstrap support for L0P895 as seed ortholog is 99%.

Group of orthologs #663. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:178 P.jiroveci:178

E3M7Y9              	100.00%		L0P9I0              	100.00%
Bootstrap support for E3M7Y9 as seed ortholog is 100%.
Bootstrap support for L0P9I0 as seed ortholog is 100%.

Group of orthologs #664. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:178 P.jiroveci:178

E3M8P3              	100.00%		L0PE09              	100.00%
Bootstrap support for E3M8P3 as seed ortholog is 100%.
Bootstrap support for L0PE09 as seed ortholog is 100%.

Group of orthologs #665. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:178 P.jiroveci:178

E3NIW2              	100.00%		L0P919              	100.00%
Bootstrap support for E3NIW2 as seed ortholog is 100%.
Bootstrap support for L0P919 as seed ortholog is 100%.

Group of orthologs #666. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:178 P.jiroveci:178

E3NHD1              	100.00%		L0PBX2              	100.00%
Bootstrap support for E3NHD1 as seed ortholog is 100%.
Bootstrap support for L0PBX2 as seed ortholog is 100%.

Group of orthologs #667. Best score 178 bits
Score difference with first non-orthologous sequence - C.remanei:178 P.jiroveci:178

E3NU81              	100.00%		L0P9P8              	100.00%
Bootstrap support for E3NU81 as seed ortholog is 100%.
Bootstrap support for L0P9P8 as seed ortholog is 100%.

Group of orthologs #668. Best score 176 bits
Score difference with first non-orthologous sequence - C.remanei:176 P.jiroveci:176

E3NLX3              	100.00%		L0PGX9              	100.00%
Bootstrap support for E3NLX3 as seed ortholog is 100%.
Bootstrap support for L0PGX9 as seed ortholog is 100%.

Group of orthologs #669. Best score 175 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:175

E3LGZ4              	100.00%		L0PFH2              	100.00%
E3LQH3              	29.87%		
E3MXG5              	5.59%		
Bootstrap support for E3LGZ4 as seed ortholog is 94%.
Bootstrap support for L0PFH2 as seed ortholog is 100%.

Group of orthologs #670. Best score 175 bits
Score difference with first non-orthologous sequence - C.remanei:175 P.jiroveci:175

E3LH09              	100.00%		L0P9G1              	100.00%
Bootstrap support for E3LH09 as seed ortholog is 100%.
Bootstrap support for L0P9G1 as seed ortholog is 100%.

Group of orthologs #671. Best score 175 bits
Score difference with first non-orthologous sequence - C.remanei:175 P.jiroveci:175

E3LMP7              	100.00%		L0P8K8              	100.00%
Bootstrap support for E3LMP7 as seed ortholog is 100%.
Bootstrap support for L0P8K8 as seed ortholog is 100%.

Group of orthologs #672. Best score 175 bits
Score difference with first non-orthologous sequence - C.remanei:119 P.jiroveci:175

E3M4A8              	100.00%		L0PB84              	100.00%
Bootstrap support for E3M4A8 as seed ortholog is 100%.
Bootstrap support for L0PB84 as seed ortholog is 100%.

Group of orthologs #673. Best score 174 bits
Score difference with first non-orthologous sequence - C.remanei:174 P.jiroveci:174

E3MYF7              	100.00%		L0PGL3              	100.00%
E3LD34              	38.62%		
Bootstrap support for E3MYF7 as seed ortholog is 100%.
Bootstrap support for L0PGL3 as seed ortholog is 100%.

Group of orthologs #674. Best score 174 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:127

E3NTL2              	100.00%		L0PC81              	100.00%
E3M7E8              	97.71%		
Bootstrap support for E3NTL2 as seed ortholog is 94%.
Bootstrap support for L0PC81 as seed ortholog is 99%.

Group of orthologs #675. Best score 174 bits
Score difference with first non-orthologous sequence - C.remanei:174 P.jiroveci:174

E3M8Z3              	100.00%		L0PG43              	100.00%
Bootstrap support for E3M8Z3 as seed ortholog is 100%.
Bootstrap support for L0PG43 as seed ortholog is 100%.

Group of orthologs #676. Best score 174 bits
Score difference with first non-orthologous sequence - C.remanei:88 P.jiroveci:174

E3MJB2              	100.00%		L0PF75              	100.00%
Bootstrap support for E3MJB2 as seed ortholog is 99%.
Bootstrap support for L0PF75 as seed ortholog is 100%.

Group of orthologs #677. Best score 173 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:173

E3LQA6              	100.00%		L0PBH0              	100.00%
                    	       		L0PGS5              	37.78%
Bootstrap support for E3LQA6 as seed ortholog is 99%.
Bootstrap support for L0PBH0 as seed ortholog is 100%.

Group of orthologs #678. Best score 173 bits
Score difference with first non-orthologous sequence - C.remanei:173 P.jiroveci:173

E3LZJ7              	100.00%		L0PDL5              	100.00%
E3LWK3              	62.03%		
Bootstrap support for E3LZJ7 as seed ortholog is 100%.
Bootstrap support for L0PDL5 as seed ortholog is 100%.

Group of orthologs #679. Best score 173 bits
Score difference with first non-orthologous sequence - C.remanei:173 P.jiroveci:173

E3MNY4              	100.00%		L0PA86              	100.00%
Bootstrap support for E3MNY4 as seed ortholog is 100%.
Bootstrap support for L0PA86 as seed ortholog is 100%.

Group of orthologs #680. Best score 172 bits
Score difference with first non-orthologous sequence - C.remanei:172 P.jiroveci:172

E3M5Z9              	100.00%		L0PHT7              	100.00%
E3N2H0              	12.07%		
Bootstrap support for E3M5Z9 as seed ortholog is 100%.
Bootstrap support for L0PHT7 as seed ortholog is 100%.

Group of orthologs #681. Best score 172 bits
Score difference with first non-orthologous sequence - C.remanei:19 P.jiroveci:172

E3LRC1              	100.00%		L0PCW8              	100.00%
Bootstrap support for E3LRC1 as seed ortholog is 64%.
Alternative seed ortholog is E3MCM1 (19 bits away from this cluster)
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #682. Best score 172 bits
Score difference with first non-orthologous sequence - C.remanei:172 P.jiroveci:172

E3LS31              	100.00%		L0PGR5              	100.00%
Bootstrap support for E3LS31 as seed ortholog is 100%.
Bootstrap support for L0PGR5 as seed ortholog is 100%.

Group of orthologs #683. Best score 172 bits
Score difference with first non-orthologous sequence - C.remanei:172 P.jiroveci:172

E3LYX3              	100.00%		L0PC20              	100.00%
Bootstrap support for E3LYX3 as seed ortholog is 100%.
Bootstrap support for L0PC20 as seed ortholog is 100%.

Group of orthologs #684. Best score 172 bits
Score difference with first non-orthologous sequence - C.remanei:172 P.jiroveci:172

E3MSC5              	100.00%		L0PBJ0              	100.00%
Bootstrap support for E3MSC5 as seed ortholog is 100%.
Bootstrap support for L0PBJ0 as seed ortholog is 100%.

Group of orthologs #685. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:171 P.jiroveci:171

E3M0B2              	100.00%		L0PB94              	100.00%
E3M0B3              	59.01%		
Bootstrap support for E3M0B2 as seed ortholog is 100%.
Bootstrap support for L0PB94 as seed ortholog is 100%.

Group of orthologs #686. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:171 P.jiroveci:171

E3LK86              	100.00%		L0PFV3              	100.00%
Bootstrap support for E3LK86 as seed ortholog is 100%.
Bootstrap support for L0PFV3 as seed ortholog is 100%.

Group of orthologs #687. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:171

E3N6K7              	100.00%		L0PAF0              	100.00%
Bootstrap support for E3N6K7 as seed ortholog is 94%.
Bootstrap support for L0PAF0 as seed ortholog is 100%.

Group of orthologs #688. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:171

E3NC93              	100.00%		L0PDE4              	100.00%
Bootstrap support for E3NC93 as seed ortholog is 99%.
Bootstrap support for L0PDE4 as seed ortholog is 100%.

Group of orthologs #689. Best score 170 bits
Score difference with first non-orthologous sequence - C.remanei:31 P.jiroveci:170

E3LTA2              	100.00%		L0PEN4              	100.00%
E3NB62              	43.96%		
E3NB51              	41.45%		
Bootstrap support for E3LTA2 as seed ortholog is 74%.
Alternative seed ortholog is E3MDR8 (31 bits away from this cluster)
Bootstrap support for L0PEN4 as seed ortholog is 100%.

Group of orthologs #690. Best score 170 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:170

E3LLR7              	100.00%		L0P6T8              	100.00%
Bootstrap support for E3LLR7 as seed ortholog is 100%.
Bootstrap support for L0P6T8 as seed ortholog is 100%.

Group of orthologs #691. Best score 170 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:170

E3LTM3              	100.00%		L0PEG2              	100.00%
Bootstrap support for E3LTM3 as seed ortholog is 100%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #692. Best score 170 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:170

E3M776              	100.00%		L0PFG0              	100.00%
Bootstrap support for E3M776 as seed ortholog is 100%.
Bootstrap support for L0PFG0 as seed ortholog is 100%.

Group of orthologs #693. Best score 170 bits
Score difference with first non-orthologous sequence - C.remanei:170 P.jiroveci:170

E3NHE6              	100.00%		L0PB32              	100.00%
Bootstrap support for E3NHE6 as seed ortholog is 100%.
Bootstrap support for L0PB32 as seed ortholog is 100%.

Group of orthologs #694. Best score 169 bits
Score difference with first non-orthologous sequence - C.remanei:169 P.jiroveci:169

E3LZA5              	100.00%		L0PID4              	100.00%
                    	       		L0PGF7              	46.17%
Bootstrap support for E3LZA5 as seed ortholog is 100%.
Bootstrap support for L0PID4 as seed ortholog is 100%.

Group of orthologs #695. Best score 169 bits
Score difference with first non-orthologous sequence - C.remanei:169 P.jiroveci:169

E3MII4              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	65.27%
Bootstrap support for E3MII4 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #696. Best score 169 bits
Score difference with first non-orthologous sequence - C.remanei:169 P.jiroveci:169

E3MS76              	100.00%		L0PGE7              	100.00%
E3NP86              	85.62%		
Bootstrap support for E3MS76 as seed ortholog is 100%.
Bootstrap support for L0PGE7 as seed ortholog is 100%.

Group of orthologs #697. Best score 169 bits
Score difference with first non-orthologous sequence - C.remanei:169 P.jiroveci:169

E3M645              	100.00%		L0PGL6              	100.00%
Bootstrap support for E3M645 as seed ortholog is 100%.
Bootstrap support for L0PGL6 as seed ortholog is 100%.

Group of orthologs #698. Best score 169 bits
Score difference with first non-orthologous sequence - C.remanei:169 P.jiroveci:169

E3MG91              	100.00%		L0PC96              	100.00%
Bootstrap support for E3MG91 as seed ortholog is 100%.
Bootstrap support for L0PC96 as seed ortholog is 100%.

Group of orthologs #699. Best score 169 bits
Score difference with first non-orthologous sequence - C.remanei:169 P.jiroveci:169

E3NC56              	100.00%		L0PHA7              	100.00%
Bootstrap support for E3NC56 as seed ortholog is 100%.
Bootstrap support for L0PHA7 as seed ortholog is 100%.

Group of orthologs #700. Best score 168 bits
Score difference with first non-orthologous sequence - C.remanei:168 P.jiroveci:168

E3LH51              	100.00%		L0PCX5              	100.00%
Bootstrap support for E3LH51 as seed ortholog is 100%.
Bootstrap support for L0PCX5 as seed ortholog is 100%.

Group of orthologs #701. Best score 168 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:168

E3MX48              	100.00%		L0PE85              	100.00%
Bootstrap support for E3MX48 as seed ortholog is 97%.
Bootstrap support for L0PE85 as seed ortholog is 100%.

Group of orthologs #702. Best score 168 bits
Score difference with first non-orthologous sequence - C.remanei:168 P.jiroveci:168

E3N566              	100.00%		L0P8C9              	100.00%
Bootstrap support for E3N566 as seed ortholog is 100%.
Bootstrap support for L0P8C9 as seed ortholog is 100%.

Group of orthologs #703. Best score 167 bits
Score difference with first non-orthologous sequence - C.remanei:167 P.jiroveci:167

E3LRY9              	100.00%		L0PAL5              	100.00%
Bootstrap support for E3LRY9 as seed ortholog is 100%.
Bootstrap support for L0PAL5 as seed ortholog is 100%.

Group of orthologs #704. Best score 167 bits
Score difference with first non-orthologous sequence - C.remanei:167 P.jiroveci:167

E3LNB2              	100.00%		L0PFC9              	100.00%
Bootstrap support for E3LNB2 as seed ortholog is 100%.
Bootstrap support for L0PFC9 as seed ortholog is 100%.

Group of orthologs #705. Best score 167 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:167

E3M462              	100.00%		L0PGL1              	100.00%
Bootstrap support for E3M462 as seed ortholog is 92%.
Bootstrap support for L0PGL1 as seed ortholog is 100%.

Group of orthologs #706. Best score 167 bits
Score difference with first non-orthologous sequence - C.remanei:167 P.jiroveci:167

E3MI37              	100.00%		L0PA72              	100.00%
Bootstrap support for E3MI37 as seed ortholog is 100%.
Bootstrap support for L0PA72 as seed ortholog is 100%.

Group of orthologs #707. Best score 167 bits
Score difference with first non-orthologous sequence - C.remanei:167 P.jiroveci:167

E3NJX5              	100.00%		L0PFS1              	100.00%
Bootstrap support for E3NJX5 as seed ortholog is 100%.
Bootstrap support for L0PFS1 as seed ortholog is 100%.

Group of orthologs #708. Best score 166 bits
Score difference with first non-orthologous sequence - C.remanei:18 P.jiroveci:89

E3LDG9              	100.00%		L0PCY2              	100.00%
Bootstrap support for E3LDG9 as seed ortholog is 90%.
Bootstrap support for L0PCY2 as seed ortholog is 95%.

Group of orthologs #709. Best score 166 bits
Score difference with first non-orthologous sequence - C.remanei:50 P.jiroveci:166

E3LDV3              	100.00%		L0PGF9              	100.00%
Bootstrap support for E3LDV3 as seed ortholog is 95%.
Bootstrap support for L0PGF9 as seed ortholog is 100%.

Group of orthologs #710. Best score 166 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:166

E3LH62              	100.00%		L0PFZ5              	100.00%
Bootstrap support for E3LH62 as seed ortholog is 61%.
Alternative seed ortholog is E3LGN7 (22 bits away from this cluster)
Bootstrap support for L0PFZ5 as seed ortholog is 100%.

Group of orthologs #711. Best score 166 bits
Score difference with first non-orthologous sequence - C.remanei:166 P.jiroveci:166

E3NLS9              	100.00%		L0PEX0              	100.00%
Bootstrap support for E3NLS9 as seed ortholog is 100%.
Bootstrap support for L0PEX0 as seed ortholog is 100%.

Group of orthologs #712. Best score 165 bits
Score difference with first non-orthologous sequence - C.remanei:69 P.jiroveci:61

E3N5N3              	100.00%		L0PE79              	100.00%
E3NWX8              	67.62%		
E3NCJ0              	28.57%		
E3M7W2              	16.19%		
E3M7R0              	8.57%		
E3M191              	7.62%		
Bootstrap support for E3N5N3 as seed ortholog is 99%.
Bootstrap support for L0PE79 as seed ortholog is 98%.

Group of orthologs #713. Best score 165 bits
Score difference with first non-orthologous sequence - C.remanei:165 P.jiroveci:165

E3LTV4              	100.00%		L0P8J4              	100.00%
Bootstrap support for E3LTV4 as seed ortholog is 100%.
Bootstrap support for L0P8J4 as seed ortholog is 100%.

Group of orthologs #714. Best score 164 bits
Score difference with first non-orthologous sequence - C.remanei:164 P.jiroveci:164

E3LM63              	100.00%		L0P740              	100.00%
Bootstrap support for E3LM63 as seed ortholog is 100%.
Bootstrap support for L0P740 as seed ortholog is 100%.

Group of orthologs #715. Best score 164 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:164

E3LQR3              	100.00%		L0PFQ4              	100.00%
Bootstrap support for E3LQR3 as seed ortholog is 99%.
Bootstrap support for L0PFQ4 as seed ortholog is 100%.

Group of orthologs #716. Best score 164 bits
Score difference with first non-orthologous sequence - C.remanei:164 P.jiroveci:164

E3MGJ7              	100.00%		L0PG54              	100.00%
Bootstrap support for E3MGJ7 as seed ortholog is 100%.
Bootstrap support for L0PG54 as seed ortholog is 100%.

Group of orthologs #717. Best score 163 bits
Score difference with first non-orthologous sequence - C.remanei:163 P.jiroveci:163

E3N2W4              	100.00%		L0PFP1              	100.00%
                    	       		L0PC71              	75.35%
Bootstrap support for E3N2W4 as seed ortholog is 100%.
Bootstrap support for L0PFP1 as seed ortholog is 100%.

Group of orthologs #718. Best score 163 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:163

E3LSU4              	100.00%		L0PFR9              	100.00%
Bootstrap support for E3LSU4 as seed ortholog is 97%.
Bootstrap support for L0PFR9 as seed ortholog is 100%.

Group of orthologs #719. Best score 163 bits
Score difference with first non-orthologous sequence - C.remanei:163 P.jiroveci:163

E3MG48              	100.00%		L0PA22              	100.00%
Bootstrap support for E3MG48 as seed ortholog is 100%.
Bootstrap support for L0PA22 as seed ortholog is 100%.

Group of orthologs #720. Best score 163 bits
Score difference with first non-orthologous sequence - C.remanei:34 P.jiroveci:163

E3NRB3              	100.00%		L0PF58              	100.00%
Bootstrap support for E3NRB3 as seed ortholog is 91%.
Bootstrap support for L0PF58 as seed ortholog is 100%.

Group of orthologs #721. Best score 162 bits
Score difference with first non-orthologous sequence - C.remanei:162 P.jiroveci:162

E3LRY8              	100.00%		L0P7L9              	100.00%
Bootstrap support for E3LRY8 as seed ortholog is 100%.
Bootstrap support for L0P7L9 as seed ortholog is 100%.

Group of orthologs #722. Best score 162 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:162

E3LME5              	100.00%		L0PF33              	100.00%
Bootstrap support for E3LME5 as seed ortholog is 99%.
Bootstrap support for L0PF33 as seed ortholog is 100%.

Group of orthologs #723. Best score 162 bits
Score difference with first non-orthologous sequence - C.remanei:162 P.jiroveci:162

E3LM77              	100.00%		L0PFH7              	100.00%
Bootstrap support for E3LM77 as seed ortholog is 100%.
Bootstrap support for L0PFH7 as seed ortholog is 100%.

Group of orthologs #724. Best score 162 bits
Score difference with first non-orthologous sequence - C.remanei:162 P.jiroveci:162

E3MG76              	100.00%		L0PBD4              	100.00%
Bootstrap support for E3MG76 as seed ortholog is 100%.
Bootstrap support for L0PBD4 as seed ortholog is 100%.

Group of orthologs #725. Best score 161 bits
Score difference with first non-orthologous sequence - C.remanei:161 P.jiroveci:161

E3MTV2              	100.00%		L0PC66              	100.00%
                    	       		L0PBN8              	75.00%
Bootstrap support for E3MTV2 as seed ortholog is 100%.
Bootstrap support for L0PC66 as seed ortholog is 100%.

Group of orthologs #726. Best score 161 bits
Score difference with first non-orthologous sequence - C.remanei:161 P.jiroveci:161

E3M4J1              	100.00%		L0P8Y0              	100.00%
Bootstrap support for E3M4J1 as seed ortholog is 100%.
Bootstrap support for L0P8Y0 as seed ortholog is 100%.

Group of orthologs #727. Best score 160 bits
Score difference with first non-orthologous sequence - C.remanei:88 P.jiroveci:160

E3LSX1              	100.00%		L0PF53              	100.00%
E3NTH2              	18.88%		
E3NWK5              	17.87%		
Bootstrap support for E3LSX1 as seed ortholog is 99%.
Bootstrap support for L0PF53 as seed ortholog is 100%.

Group of orthologs #728. Best score 160 bits
Score difference with first non-orthologous sequence - C.remanei:160 P.jiroveci:160

E3LX34              	100.00%		L0P8P7              	100.00%
Bootstrap support for E3LX34 as seed ortholog is 100%.
Bootstrap support for L0P8P7 as seed ortholog is 100%.

Group of orthologs #729. Best score 160 bits
Score difference with first non-orthologous sequence - C.remanei:160 P.jiroveci:160

E3LY26              	100.00%		L0PB81              	100.00%
Bootstrap support for E3LY26 as seed ortholog is 100%.
Bootstrap support for L0PB81 as seed ortholog is 100%.

Group of orthologs #730. Best score 160 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:92

E3M4C3              	100.00%		L0PAZ8              	100.00%
Bootstrap support for E3M4C3 as seed ortholog is 99%.
Bootstrap support for L0PAZ8 as seed ortholog is 99%.

Group of orthologs #731. Best score 160 bits
Score difference with first non-orthologous sequence - C.remanei:160 P.jiroveci:113

E3M891              	100.00%		L0PC80              	100.00%
Bootstrap support for E3M891 as seed ortholog is 100%.
Bootstrap support for L0PC80 as seed ortholog is 100%.

Group of orthologs #732. Best score 160 bits
Score difference with first non-orthologous sequence - C.remanei:160 P.jiroveci:160

E3N3X6              	100.00%		L0P804              	100.00%
Bootstrap support for E3N3X6 as seed ortholog is 100%.
Bootstrap support for L0P804 as seed ortholog is 100%.

Group of orthologs #733. Best score 159 bits
Score difference with first non-orthologous sequence - C.remanei:159 P.jiroveci:159

E3MQW3              	100.00%		L0PCK8              	100.00%
Bootstrap support for E3MQW3 as seed ortholog is 100%.
Bootstrap support for L0PCK8 as seed ortholog is 100%.

Group of orthologs #734. Best score 159 bits
Score difference with first non-orthologous sequence - C.remanei:38 P.jiroveci:109

E3MT08              	100.00%		L0PDG6              	100.00%
Bootstrap support for E3MT08 as seed ortholog is 86%.
Bootstrap support for L0PDG6 as seed ortholog is 99%.

Group of orthologs #735. Best score 159 bits
Score difference with first non-orthologous sequence - C.remanei:159 P.jiroveci:159

E3NCK4              	100.00%		L0PGZ5              	100.00%
Bootstrap support for E3NCK4 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #736. Best score 158 bits
Score difference with first non-orthologous sequence - C.remanei:158 P.jiroveci:158

E3M363              	100.00%		L0PBR7              	100.00%
E3M798              	100.00%		
E3LKR9              	89.02%		
E3LQ35              	89.02%		
E3LZV3              	89.02%		
E3LZW2              	89.02%		
E3NKL8              	75.61%		
E3LZV8              	69.51%		
E3M6T7              	55.00%		
Bootstrap support for E3M363 as seed ortholog is 100%.
Bootstrap support for E3M798 as seed ortholog is 100%.
Bootstrap support for L0PBR7 as seed ortholog is 100%.

Group of orthologs #737. Best score 158 bits
Score difference with first non-orthologous sequence - C.remanei:158 P.jiroveci:158

E3MM61              	100.00%		L0PF66              	100.00%
E3NWD4              	74.62%		
Bootstrap support for E3MM61 as seed ortholog is 100%.
Bootstrap support for L0PF66 as seed ortholog is 100%.

Group of orthologs #738. Best score 158 bits
Score difference with first non-orthologous sequence - C.remanei:158 P.jiroveci:158

E3NK71              	100.00%		L0PFW9              	100.00%
E3NK70              	23.81%		
Bootstrap support for E3NK71 as seed ortholog is 100%.
Bootstrap support for L0PFW9 as seed ortholog is 100%.

Group of orthologs #739. Best score 158 bits
Score difference with first non-orthologous sequence - C.remanei:158 P.jiroveci:158

E3LV20              	100.00%		L0P965              	100.00%
Bootstrap support for E3LV20 as seed ortholog is 100%.
Bootstrap support for L0P965 as seed ortholog is 100%.

Group of orthologs #740. Best score 158 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:158

E3LUD6              	100.00%		L0PDB9              	100.00%
Bootstrap support for E3LUD6 as seed ortholog is 94%.
Bootstrap support for L0PDB9 as seed ortholog is 100%.

Group of orthologs #741. Best score 157 bits
Score difference with first non-orthologous sequence - C.remanei:157 P.jiroveci:157

E3M7D9              	100.00%		L0P9G0              	100.00%
E3MQ20              	8.93%		
E3MSL1              	8.56%		
Bootstrap support for E3M7D9 as seed ortholog is 100%.
Bootstrap support for L0P9G0 as seed ortholog is 100%.

Group of orthologs #742. Best score 157 bits
Score difference with first non-orthologous sequence - C.remanei:157 P.jiroveci:157

E3LNB0              	100.00%		L0PA78              	100.00%
Bootstrap support for E3LNB0 as seed ortholog is 100%.
Bootstrap support for L0PA78 as seed ortholog is 100%.

Group of orthologs #743. Best score 157 bits
Score difference with first non-orthologous sequence - C.remanei:157 P.jiroveci:157

E3LTE7              	100.00%		L0P8I2              	100.00%
Bootstrap support for E3LTE7 as seed ortholog is 100%.
Bootstrap support for L0P8I2 as seed ortholog is 100%.

Group of orthologs #744. Best score 157 bits
Score difference with first non-orthologous sequence - C.remanei:157 P.jiroveci:157

E3NE73              	100.00%		L0PC06              	100.00%
Bootstrap support for E3NE73 as seed ortholog is 100%.
Bootstrap support for L0PC06 as seed ortholog is 100%.

Group of orthologs #745. Best score 156 bits
Score difference with first non-orthologous sequence - C.remanei:156 P.jiroveci:156

E3NPN7              	100.00%		L0P9K2              	100.00%
E3MT16              	99.43%		
Bootstrap support for E3NPN7 as seed ortholog is 100%.
Bootstrap support for L0P9K2 as seed ortholog is 100%.

Group of orthologs #746. Best score 156 bits
Score difference with first non-orthologous sequence - C.remanei:93 P.jiroveci:156

E3M8I8              	100.00%		L0PDN9              	100.00%
Bootstrap support for E3M8I8 as seed ortholog is 98%.
Bootstrap support for L0PDN9 as seed ortholog is 100%.

Group of orthologs #747. Best score 156 bits
Score difference with first non-orthologous sequence - C.remanei:156 P.jiroveci:156

E3MG09              	100.00%		L0P9S4              	100.00%
Bootstrap support for E3MG09 as seed ortholog is 100%.
Bootstrap support for L0P9S4 as seed ortholog is 100%.

Group of orthologs #748. Best score 156 bits
Score difference with first non-orthologous sequence - C.remanei:156 P.jiroveci:156

E3MYE9              	100.00%		L0P7Z9              	100.00%
Bootstrap support for E3MYE9 as seed ortholog is 100%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #749. Best score 156 bits
Score difference with first non-orthologous sequence - C.remanei:108 P.jiroveci:156

E3NBS6              	100.00%		L0P839              	100.00%
Bootstrap support for E3NBS6 as seed ortholog is 99%.
Bootstrap support for L0P839 as seed ortholog is 100%.

Group of orthologs #750. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:155

E3MLY4              	100.00%		L0PE03              	100.00%
E3NP07              	89.19%		
Bootstrap support for E3MLY4 as seed ortholog is 98%.
Bootstrap support for L0PE03 as seed ortholog is 100%.

Group of orthologs #751. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:155 P.jiroveci:155

E3M685              	100.00%		L0PA27              	100.00%
Bootstrap support for E3M685 as seed ortholog is 100%.
Bootstrap support for L0PA27 as seed ortholog is 100%.

Group of orthologs #752. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:155 P.jiroveci:155

E3MYF2              	100.00%		L0PC68              	100.00%
Bootstrap support for E3MYF2 as seed ortholog is 100%.
Bootstrap support for L0PC68 as seed ortholog is 100%.

Group of orthologs #753. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:155 P.jiroveci:155

E3MYB5              	100.00%		L0PEG0              	100.00%
Bootstrap support for E3MYB5 as seed ortholog is 100%.
Bootstrap support for L0PEG0 as seed ortholog is 100%.

Group of orthologs #754. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:155 P.jiroveci:155

E3MZ09              	100.00%		L0PE43              	100.00%
Bootstrap support for E3MZ09 as seed ortholog is 100%.
Bootstrap support for L0PE43 as seed ortholog is 100%.

Group of orthologs #755. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:155 P.jiroveci:155

E3MYF0              	100.00%		L0PFY9              	100.00%
Bootstrap support for E3MYF0 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #756. Best score 154 bits
Score difference with first non-orthologous sequence - C.remanei:154 P.jiroveci:154

E3LW32              	100.00%		L0PBI9              	100.00%
Bootstrap support for E3LW32 as seed ortholog is 100%.
Bootstrap support for L0PBI9 as seed ortholog is 100%.

Group of orthologs #757. Best score 154 bits
Score difference with first non-orthologous sequence - C.remanei:154 P.jiroveci:154

E3M481              	100.00%		L0PDJ4              	100.00%
Bootstrap support for E3M481 as seed ortholog is 100%.
Bootstrap support for L0PDJ4 as seed ortholog is 100%.

Group of orthologs #758. Best score 153 bits
Score difference with first non-orthologous sequence - C.remanei:153 P.jiroveci:153

E3MT90              	100.00%		L0PC70              	100.00%
Bootstrap support for E3MT90 as seed ortholog is 100%.
Bootstrap support for L0PC70 as seed ortholog is 100%.

Group of orthologs #759. Best score 153 bits
Score difference with first non-orthologous sequence - C.remanei:153 P.jiroveci:153

E3N3U8              	100.00%		L0PEK7              	100.00%
Bootstrap support for E3N3U8 as seed ortholog is 100%.
Bootstrap support for L0PEK7 as seed ortholog is 100%.

Group of orthologs #760. Best score 153 bits
Score difference with first non-orthologous sequence - C.remanei:153 P.jiroveci:153

E3NB60              	100.00%		L0PFX5              	100.00%
Bootstrap support for E3NB60 as seed ortholog is 100%.
Bootstrap support for L0PFX5 as seed ortholog is 100%.

Group of orthologs #761. Best score 152 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:110

E3LDC8              	100.00%		L0PDE1              	100.00%
E3MDF6              	10.82%		
Bootstrap support for E3LDC8 as seed ortholog is 97%.
Bootstrap support for L0PDE1 as seed ortholog is 99%.

Group of orthologs #762. Best score 152 bits
Score difference with first non-orthologous sequence - C.remanei:152 P.jiroveci:152

E3LPW2              	100.00%		L0P9W6              	100.00%
Bootstrap support for E3LPW2 as seed ortholog is 100%.
Bootstrap support for L0P9W6 as seed ortholog is 100%.

Group of orthologs #763. Best score 152 bits
Score difference with first non-orthologous sequence - C.remanei:152 P.jiroveci:152

E3LRB1              	100.00%		L0PBU7              	100.00%
Bootstrap support for E3LRB1 as seed ortholog is 100%.
Bootstrap support for L0PBU7 as seed ortholog is 100%.

Group of orthologs #764. Best score 152 bits
Score difference with first non-orthologous sequence - C.remanei:152 P.jiroveci:152

E3NU17              	100.00%		L0PBG0              	100.00%
Bootstrap support for E3NU17 as seed ortholog is 100%.
Bootstrap support for L0PBG0 as seed ortholog is 100%.

Group of orthologs #765. Best score 151 bits
Score difference with first non-orthologous sequence - C.remanei:151 P.jiroveci:151

E3LZS8              	100.00%		L0PBM3              	100.00%
E3LD03              	30.04%		
E3LD04              	13.86%		
Bootstrap support for E3LZS8 as seed ortholog is 100%.
Bootstrap support for L0PBM3 as seed ortholog is 100%.

Group of orthologs #766. Best score 151 bits
Score difference with first non-orthologous sequence - C.remanei:151 P.jiroveci:151

E3LWE4              	100.00%		L0P8P5              	100.00%
Bootstrap support for E3LWE4 as seed ortholog is 100%.
Bootstrap support for L0P8P5 as seed ortholog is 100%.

Group of orthologs #767. Best score 151 bits
Score difference with first non-orthologous sequence - C.remanei:151 P.jiroveci:151

E3LYX5              	100.00%		L0PCA8              	100.00%
Bootstrap support for E3LYX5 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #768. Best score 151 bits
Score difference with first non-orthologous sequence - C.remanei:151 P.jiroveci:151

E3MCI3              	100.00%		L0PF65              	100.00%
Bootstrap support for E3MCI3 as seed ortholog is 100%.
Bootstrap support for L0PF65 as seed ortholog is 100%.

Group of orthologs #769. Best score 151 bits
Score difference with first non-orthologous sequence - C.remanei:151 P.jiroveci:151

E3MXL2              	100.00%		L0PA48              	100.00%
Bootstrap support for E3MXL2 as seed ortholog is 100%.
Bootstrap support for L0PA48 as seed ortholog is 100%.

Group of orthologs #770. Best score 151 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:151

E3NKK2              	100.00%		L0PBM0              	100.00%
Bootstrap support for E3NKK2 as seed ortholog is 99%.
Bootstrap support for L0PBM0 as seed ortholog is 100%.

Group of orthologs #771. Best score 150 bits
Score difference with first non-orthologous sequence - C.remanei:106 P.jiroveci:74

E3LSX6              	100.00%		L0PEH9              	100.00%
Bootstrap support for E3LSX6 as seed ortholog is 99%.
Bootstrap support for L0PEH9 as seed ortholog is 98%.

Group of orthologs #772. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:149

E3LR00              	100.00%		L0PBM9              	100.00%
Bootstrap support for E3LR00 as seed ortholog is 95%.
Bootstrap support for L0PBM9 as seed ortholog is 100%.

Group of orthologs #773. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:95 P.jiroveci:149

E3M6D3              	100.00%		L0P9T6              	100.00%
Bootstrap support for E3M6D3 as seed ortholog is 99%.
Bootstrap support for L0P9T6 as seed ortholog is 100%.

Group of orthologs #774. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:149 P.jiroveci:149

E3MN43              	100.00%		L0PAB8              	100.00%
Bootstrap support for E3MN43 as seed ortholog is 100%.
Bootstrap support for L0PAB8 as seed ortholog is 100%.

Group of orthologs #775. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:149 P.jiroveci:149

E3MXX9              	100.00%		L0P7S0              	100.00%
Bootstrap support for E3MXX9 as seed ortholog is 100%.
Bootstrap support for L0P7S0 as seed ortholog is 100%.

Group of orthologs #776. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:149 P.jiroveci:149

E3MZI0              	100.00%		L0P962              	100.00%
Bootstrap support for E3MZI0 as seed ortholog is 100%.
Bootstrap support for L0P962 as seed ortholog is 100%.

Group of orthologs #777. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:149 P.jiroveci:149

E3MZT7              	100.00%		L0PE02              	100.00%
Bootstrap support for E3MZT7 as seed ortholog is 100%.
Bootstrap support for L0PE02 as seed ortholog is 100%.

Group of orthologs #778. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:148 P.jiroveci:148

E3LZB2              	100.00%		L0PEB9              	100.00%
                    	       		L0PA79              	59.68%
Bootstrap support for E3LZB2 as seed ortholog is 100%.
Bootstrap support for L0PEB9 as seed ortholog is 100%.

Group of orthologs #779. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:148 P.jiroveci:148

E3M7T2              	100.00%		L0PDL8              	100.00%
                    	       		L0PD52              	91.15%
Bootstrap support for E3M7T2 as seed ortholog is 100%.
Bootstrap support for L0PDL8 as seed ortholog is 100%.

Group of orthologs #780. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:17 P.jiroveci:148

E3M2W1              	100.00%		L0P7E9              	100.00%
Bootstrap support for E3M2W1 as seed ortholog is 73%.
Alternative seed ortholog is E3LFE8 (17 bits away from this cluster)
Bootstrap support for L0P7E9 as seed ortholog is 100%.

Group of orthologs #781. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:148

E3M3N6              	100.00%		L0PFW7              	100.00%
Bootstrap support for E3M3N6 as seed ortholog is 83%.
Bootstrap support for L0PFW7 as seed ortholog is 100%.

Group of orthologs #782. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:148

E3MKE0              	100.00%		L0PBF9              	100.00%
Bootstrap support for E3MKE0 as seed ortholog is 96%.
Bootstrap support for L0PBF9 as seed ortholog is 100%.

Group of orthologs #783. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:148 P.jiroveci:148

E3N1Q2              	100.00%		L0P9N4              	100.00%
Bootstrap support for E3N1Q2 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #784. Best score 147 bits
Score difference with first non-orthologous sequence - C.remanei:147 P.jiroveci:147

E3LPB8              	100.00%		L0PGK0              	100.00%
Bootstrap support for E3LPB8 as seed ortholog is 100%.
Bootstrap support for L0PGK0 as seed ortholog is 100%.

Group of orthologs #785. Best score 147 bits
Score difference with first non-orthologous sequence - C.remanei:147 P.jiroveci:147

E3LXV7              	100.00%		L0PDH1              	100.00%
Bootstrap support for E3LXV7 as seed ortholog is 100%.
Bootstrap support for L0PDH1 as seed ortholog is 100%.

Group of orthologs #786. Best score 147 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:147

E3NPT3              	100.00%		L0PFK9              	100.00%
Bootstrap support for E3NPT3 as seed ortholog is 99%.
Bootstrap support for L0PFK9 as seed ortholog is 100%.

Group of orthologs #787. Best score 146 bits
Score difference with first non-orthologous sequence - C.remanei:146 P.jiroveci:146

E3LM38              	100.00%		L0PFM7              	100.00%
Bootstrap support for E3LM38 as seed ortholog is 100%.
Bootstrap support for L0PFM7 as seed ortholog is 100%.

Group of orthologs #788. Best score 145 bits
Score difference with first non-orthologous sequence - C.remanei:145 P.jiroveci:145

E3M8Q7              	100.00%		L0PAH1              	100.00%
Bootstrap support for E3M8Q7 as seed ortholog is 100%.
Bootstrap support for L0PAH1 as seed ortholog is 100%.

Group of orthologs #789. Best score 145 bits
Score difference with first non-orthologous sequence - C.remanei:145 P.jiroveci:145

E3M7T4              	100.00%		L0PDJ6              	100.00%
Bootstrap support for E3M7T4 as seed ortholog is 100%.
Bootstrap support for L0PDJ6 as seed ortholog is 100%.

Group of orthologs #790. Best score 144 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:144

E3MLX8              	100.00%		L0PFD7              	100.00%
E3NPY5              	71.02%		
Bootstrap support for E3MLX8 as seed ortholog is 100%.
Bootstrap support for L0PFD7 as seed ortholog is 100%.

Group of orthologs #791. Best score 144 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:144

E3NDC4              	100.00%		L0PET8              	100.00%
E3NDC2              	62.12%		
Bootstrap support for E3NDC4 as seed ortholog is 100%.
Bootstrap support for L0PET8 as seed ortholog is 100%.

Group of orthologs #792. Best score 144 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:144

E3NFR5              	100.00%		L0PDS2              	100.00%
E3NRG6              	100.00%		
Bootstrap support for E3NFR5 as seed ortholog is 100%.
Bootstrap support for E3NRG6 as seed ortholog is 100%.
Bootstrap support for L0PDS2 as seed ortholog is 100%.

Group of orthologs #793. Best score 144 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:144

E3LLQ1              	100.00%		L0PFW4              	100.00%
Bootstrap support for E3LLQ1 as seed ortholog is 100%.
Bootstrap support for L0PFW4 as seed ortholog is 100%.

Group of orthologs #794. Best score 144 bits
Score difference with first non-orthologous sequence - C.remanei:144 P.jiroveci:144

E3MFG7              	100.00%		L0PEG7              	100.00%
Bootstrap support for E3MFG7 as seed ortholog is 100%.
Bootstrap support for L0PEG7 as seed ortholog is 100%.

Group of orthologs #795. Best score 143 bits
Score difference with first non-orthologous sequence - C.remanei:143 P.jiroveci:143

E3LNW4              	100.00%		L0PDP9              	100.00%
Bootstrap support for E3LNW4 as seed ortholog is 100%.
Bootstrap support for L0PDP9 as seed ortholog is 100%.

Group of orthologs #796. Best score 143 bits
Score difference with first non-orthologous sequence - C.remanei:143 P.jiroveci:143

E3LXA3              	100.00%		L0PC24              	100.00%
Bootstrap support for E3LXA3 as seed ortholog is 100%.
Bootstrap support for L0PC24 as seed ortholog is 100%.

Group of orthologs #797. Best score 143 bits
Score difference with first non-orthologous sequence - C.remanei:143 P.jiroveci:143

E3MG03              	100.00%		L0P910              	100.00%
Bootstrap support for E3MG03 as seed ortholog is 100%.
Bootstrap support for L0P910 as seed ortholog is 100%.

Group of orthologs #798. Best score 143 bits
Score difference with first non-orthologous sequence - C.remanei:143 P.jiroveci:143

E3NBT5              	100.00%		L0PEA1              	100.00%
Bootstrap support for E3NBT5 as seed ortholog is 100%.
Bootstrap support for L0PEA1 as seed ortholog is 100%.

Group of orthologs #799. Best score 142 bits
Score difference with first non-orthologous sequence - C.remanei:142 P.jiroveci:142

E3LT22              	100.00%		L0P963              	100.00%
Bootstrap support for E3LT22 as seed ortholog is 100%.
Bootstrap support for L0P963 as seed ortholog is 100%.

Group of orthologs #800. Best score 142 bits
Score difference with first non-orthologous sequence - C.remanei:142 P.jiroveci:100

E3MA21              	100.00%		L0PAG4              	100.00%
Bootstrap support for E3MA21 as seed ortholog is 100%.
Bootstrap support for L0PAG4 as seed ortholog is 99%.

Group of orthologs #801. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:141

E3LTV3              	100.00%		L0P9G8              	100.00%
                    	       		L0PDI0              	55.67%
Bootstrap support for E3LTV3 as seed ortholog is 100%.
Bootstrap support for L0P9G8 as seed ortholog is 100%.

Group of orthologs #802. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:141

E3MR64              	100.00%		L0PGW6              	100.00%
E3NPB4              	100.00%		
Bootstrap support for E3MR64 as seed ortholog is 100%.
Bootstrap support for E3NPB4 as seed ortholog is 100%.
Bootstrap support for L0PGW6 as seed ortholog is 100%.

Group of orthologs #803. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:141

E3LCM8              	100.00%		L0PEV6              	100.00%
Bootstrap support for E3LCM8 as seed ortholog is 100%.
Bootstrap support for L0PEV6 as seed ortholog is 100%.

Group of orthologs #804. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:141

E3LR06              	100.00%		L0PB34              	100.00%
Bootstrap support for E3LR06 as seed ortholog is 100%.
Bootstrap support for L0PB34 as seed ortholog is 100%.

Group of orthologs #805. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:141

E3M3J9              	100.00%		L0PFY6              	100.00%
Bootstrap support for E3M3J9 as seed ortholog is 100%.
Bootstrap support for L0PFY6 as seed ortholog is 100%.

Group of orthologs #806. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:50 P.jiroveci:141

E3M8J1              	100.00%		L0PEJ9              	100.00%
Bootstrap support for E3M8J1 as seed ortholog is 89%.
Bootstrap support for L0PEJ9 as seed ortholog is 100%.

Group of orthologs #807. Best score 141 bits
Score difference with first non-orthologous sequence - C.remanei:141 P.jiroveci:141

E3N3X4              	100.00%		L0PCG3              	100.00%
Bootstrap support for E3N3X4 as seed ortholog is 100%.
Bootstrap support for L0PCG3 as seed ortholog is 100%.

Group of orthologs #808. Best score 140 bits
Score difference with first non-orthologous sequence - C.remanei:140 P.jiroveci:140

E3MD19              	100.00%		L0PD37              	100.00%
Bootstrap support for E3MD19 as seed ortholog is 100%.
Bootstrap support for L0PD37 as seed ortholog is 100%.

Group of orthologs #809. Best score 139 bits
Score difference with first non-orthologous sequence - C.remanei:139 P.jiroveci:139

E3LYA2              	100.00%		L0PE13              	100.00%
E3LEC5              	30.87%		
Bootstrap support for E3LYA2 as seed ortholog is 100%.
Bootstrap support for L0PE13 as seed ortholog is 100%.

Group of orthologs #810. Best score 139 bits
Score difference with first non-orthologous sequence - C.remanei:139 P.jiroveci:139

E3LGH3              	100.00%		L0PCU6              	100.00%
Bootstrap support for E3LGH3 as seed ortholog is 100%.
Bootstrap support for L0PCU6 as seed ortholog is 100%.

Group of orthologs #811. Best score 139 bits
Score difference with first non-orthologous sequence - C.remanei:139 P.jiroveci:139

E3MS13              	100.00%		L0PI09              	100.00%
Bootstrap support for E3MS13 as seed ortholog is 100%.
Bootstrap support for L0PI09 as seed ortholog is 100%.

Group of orthologs #812. Best score 137 bits
Score difference with first non-orthologous sequence - C.remanei:137 P.jiroveci:137

E3ME32              	100.00%		L0P6Q5              	100.00%
E3MI63              	39.86%		
Bootstrap support for E3ME32 as seed ortholog is 100%.
Bootstrap support for L0P6Q5 as seed ortholog is 100%.

Group of orthologs #813. Best score 137 bits
Score difference with first non-orthologous sequence - C.remanei:137 P.jiroveci:137

E3LWX1              	100.00%		L0P6S2              	100.00%
Bootstrap support for E3LWX1 as seed ortholog is 100%.
Bootstrap support for L0P6S2 as seed ortholog is 100%.

Group of orthologs #814. Best score 137 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:137

E3LRM4              	100.00%		L0PF05              	100.00%
Bootstrap support for E3LRM4 as seed ortholog is 99%.
Bootstrap support for L0PF05 as seed ortholog is 100%.

Group of orthologs #815. Best score 137 bits
Score difference with first non-orthologous sequence - C.remanei:137 P.jiroveci:137

E3MD03              	100.00%		L0PBZ1              	100.00%
Bootstrap support for E3MD03 as seed ortholog is 100%.
Bootstrap support for L0PBZ1 as seed ortholog is 100%.

Group of orthologs #816. Best score 137 bits
Score difference with first non-orthologous sequence - C.remanei:137 P.jiroveci:70

E3MKB6              	100.00%		L0PCI0              	100.00%
Bootstrap support for E3MKB6 as seed ortholog is 100%.
Bootstrap support for L0PCI0 as seed ortholog is 91%.

Group of orthologs #817. Best score 137 bits
Score difference with first non-orthologous sequence - C.remanei:137 P.jiroveci:137

E3NH41              	100.00%		L0PAH0              	100.00%
Bootstrap support for E3NH41 as seed ortholog is 100%.
Bootstrap support for L0PAH0 as seed ortholog is 100%.

Group of orthologs #818. Best score 136 bits
Score difference with first non-orthologous sequence - C.remanei:18 P.jiroveci:136

E3M0I5              	100.00%		L0PD97              	100.00%
E3LWV0              	55.56%		
Bootstrap support for E3M0I5 as seed ortholog is 70%.
Alternative seed ortholog is E3LCD8 (18 bits away from this cluster)
Bootstrap support for L0PD97 as seed ortholog is 100%.

Group of orthologs #819. Best score 136 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:136

E3M3K0              	100.00%		L0PB62              	100.00%
Bootstrap support for E3M3K0 as seed ortholog is 99%.
Bootstrap support for L0PB62 as seed ortholog is 100%.

Group of orthologs #820. Best score 136 bits
Score difference with first non-orthologous sequence - C.remanei:136 P.jiroveci:79

E3MEX2              	100.00%		L0PFJ7              	100.00%
Bootstrap support for E3MEX2 as seed ortholog is 100%.
Bootstrap support for L0PFJ7 as seed ortholog is 99%.

Group of orthologs #821. Best score 136 bits
Score difference with first non-orthologous sequence - C.remanei:136 P.jiroveci:136

E3MZJ0              	100.00%		L0PAB2              	100.00%
Bootstrap support for E3MZJ0 as seed ortholog is 100%.
Bootstrap support for L0PAB2 as seed ortholog is 100%.

Group of orthologs #822. Best score 136 bits
Score difference with first non-orthologous sequence - C.remanei:136 P.jiroveci:136

E3NGT0              	100.00%		L0PAX4              	100.00%
Bootstrap support for E3NGT0 as seed ortholog is 100%.
Bootstrap support for L0PAX4 as seed ortholog is 100%.

Group of orthologs #823. Best score 135 bits
Score difference with first non-orthologous sequence - C.remanei:135 P.jiroveci:18

E3LFD0              	100.00%		L0PGP9              	100.00%
Bootstrap support for E3LFD0 as seed ortholog is 100%.
Bootstrap support for L0PGP9 as seed ortholog is 70%.
Alternative seed ortholog is L0PA33 (18 bits away from this cluster)

Group of orthologs #824. Best score 135 bits
Score difference with first non-orthologous sequence - C.remanei:135 P.jiroveci:135

E3MG04              	100.00%		L0PB31              	100.00%
Bootstrap support for E3MG04 as seed ortholog is 100%.
Bootstrap support for L0PB31 as seed ortholog is 100%.

Group of orthologs #825. Best score 135 bits
Score difference with first non-orthologous sequence - C.remanei:135 P.jiroveci:135

E3MSX1              	100.00%		L0PDI2              	100.00%
Bootstrap support for E3MSX1 as seed ortholog is 100%.
Bootstrap support for L0PDI2 as seed ortholog is 100%.

Group of orthologs #826. Best score 134 bits
Score difference with first non-orthologous sequence - C.remanei:134 P.jiroveci:134

E3NSA2              	100.00%		L0PAW7              	100.00%
E3NC55              	97.57%		
Bootstrap support for E3NSA2 as seed ortholog is 100%.
Bootstrap support for L0PAW7 as seed ortholog is 100%.

Group of orthologs #827. Best score 134 bits
Score difference with first non-orthologous sequence - C.remanei:134 P.jiroveci:134

E3M0U9              	100.00%		L0PH83              	100.00%
Bootstrap support for E3M0U9 as seed ortholog is 100%.
Bootstrap support for L0PH83 as seed ortholog is 100%.

Group of orthologs #828. Best score 134 bits
Score difference with first non-orthologous sequence - C.remanei:30 P.jiroveci:62

E3MYE8              	100.00%		L0PEI1              	100.00%
Bootstrap support for E3MYE8 as seed ortholog is 87%.
Bootstrap support for L0PEI1 as seed ortholog is 98%.

Group of orthologs #829. Best score 133 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:133

E3NN10              	100.00%		L0PBH3              	100.00%
E3N3V6              	99.69%		
E3MXM5              	28.59%		
E3LPP9              	23.32%		
E3NBA6              	22.39%		
E3MDX8              	14.86%		
Bootstrap support for E3NN10 as seed ortholog is 100%.
Bootstrap support for L0PBH3 as seed ortholog is 100%.

Group of orthologs #830. Best score 133 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:133

E3M7Z8              	100.00%		L0P9S7              	100.00%
E3NWV3              	93.07%		
Bootstrap support for E3M7Z8 as seed ortholog is 100%.
Bootstrap support for L0P9S7 as seed ortholog is 100%.

Group of orthologs #831. Best score 133 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:133

E3LQK8              	100.00%		L0PG84              	100.00%
Bootstrap support for E3LQK8 as seed ortholog is 100%.
Bootstrap support for L0PG84 as seed ortholog is 100%.

Group of orthologs #832. Best score 133 bits
Score difference with first non-orthologous sequence - C.remanei:133 P.jiroveci:133

E3MFU9              	100.00%		L0PAM3              	100.00%
Bootstrap support for E3MFU9 as seed ortholog is 100%.
Bootstrap support for L0PAM3 as seed ortholog is 100%.

Group of orthologs #833. Best score 131 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:131

E3LNJ8              	100.00%		L0P8G7              	100.00%
Bootstrap support for E3LNJ8 as seed ortholog is 100%.
Bootstrap support for L0P8G7 as seed ortholog is 100%.

Group of orthologs #834. Best score 131 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:131

E3LSU3              	100.00%		L0PCV5              	100.00%
Bootstrap support for E3LSU3 as seed ortholog is 100%.
Bootstrap support for L0PCV5 as seed ortholog is 100%.

Group of orthologs #835. Best score 131 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:131

E3LQL1              	100.00%		L0PFX0              	100.00%
Bootstrap support for E3LQL1 as seed ortholog is 100%.
Bootstrap support for L0PFX0 as seed ortholog is 100%.

Group of orthologs #836. Best score 131 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:131

E3M3T0              	100.00%		L0P8H6              	100.00%
Bootstrap support for E3M3T0 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #837. Best score 131 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:131

E3MA40              	100.00%		L0PF04              	100.00%
Bootstrap support for E3MA40 as seed ortholog is 100%.
Bootstrap support for L0PF04 as seed ortholog is 100%.

Group of orthologs #838. Best score 131 bits
Score difference with first non-orthologous sequence - C.remanei:131 P.jiroveci:131

E3NC64              	100.00%		L0PA35              	100.00%
Bootstrap support for E3NC64 as seed ortholog is 100%.
Bootstrap support for L0PA35 as seed ortholog is 100%.

Group of orthologs #839. Best score 130 bits
Score difference with first non-orthologous sequence - C.remanei:130 P.jiroveci:130

E3LQU8              	100.00%		L0P778              	100.00%
Bootstrap support for E3LQU8 as seed ortholog is 100%.
Bootstrap support for L0P778 as seed ortholog is 100%.

Group of orthologs #840. Best score 129 bits
Score difference with first non-orthologous sequence - C.remanei:129 P.jiroveci:129

E3LIT7              	100.00%		L0PC89              	100.00%
E3MB24              	6.29%		
Bootstrap support for E3LIT7 as seed ortholog is 100%.
Bootstrap support for L0PC89 as seed ortholog is 100%.

Group of orthologs #841. Best score 129 bits
Score difference with first non-orthologous sequence - C.remanei:129 P.jiroveci:129

E3MC60              	100.00%		L0P768              	100.00%
E3N6Y0              	19.65%		
Bootstrap support for E3MC60 as seed ortholog is 100%.
Bootstrap support for L0P768 as seed ortholog is 100%.

Group of orthologs #842. Best score 129 bits
Score difference with first non-orthologous sequence - C.remanei:129 P.jiroveci:129

E3LFP4              	100.00%		L0PAZ1              	100.00%
Bootstrap support for E3LFP4 as seed ortholog is 100%.
Bootstrap support for L0PAZ1 as seed ortholog is 100%.

Group of orthologs #843. Best score 129 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:129

E3LUB7              	100.00%		L0PFQ3              	100.00%
Bootstrap support for E3LUB7 as seed ortholog is 94%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #844. Best score 129 bits
Score difference with first non-orthologous sequence - C.remanei:129 P.jiroveci:129

E3MZI1              	100.00%		L0PCP9              	100.00%
Bootstrap support for E3MZI1 as seed ortholog is 100%.
Bootstrap support for L0PCP9 as seed ortholog is 100%.

Group of orthologs #845. Best score 129 bits
Score difference with first non-orthologous sequence - C.remanei:10 P.jiroveci:129

E3NBT6              	100.00%		L0PG65              	100.00%
Bootstrap support for E3NBT6 as seed ortholog is 56%.
Alternative seed ortholog is E3LRF0 (10 bits away from this cluster)
Bootstrap support for L0PG65 as seed ortholog is 100%.

Group of orthologs #846. Best score 128 bits
Score difference with first non-orthologous sequence - C.remanei:43 P.jiroveci:73

E3N7I6              	100.00%		L0PFE0              	100.00%
E3MLI5              	20.21%		
Bootstrap support for E3N7I6 as seed ortholog is 86%.
Bootstrap support for L0PFE0 as seed ortholog is 95%.

Group of orthologs #847. Best score 128 bits
Score difference with first non-orthologous sequence - C.remanei:128 P.jiroveci:128

E3M6A9              	100.00%		L0PD11              	100.00%
Bootstrap support for E3M6A9 as seed ortholog is 100%.
Bootstrap support for L0PD11 as seed ortholog is 100%.

Group of orthologs #848. Best score 128 bits
Score difference with first non-orthologous sequence - C.remanei:128 P.jiroveci:128

E3M904              	100.00%		L0PCX8              	100.00%
Bootstrap support for E3M904 as seed ortholog is 100%.
Bootstrap support for L0PCX8 as seed ortholog is 100%.

Group of orthologs #849. Best score 127 bits
Score difference with first non-orthologous sequence - C.remanei:127 P.jiroveci:127

E3MTC9              	100.00%		L0PBC8              	100.00%
E3N696              	69.63%		
E3MTD1              	67.41%		
E3LSN0              	65.37%		
E3N697              	35.93%		
Bootstrap support for E3MTC9 as seed ortholog is 100%.
Bootstrap support for L0PBC8 as seed ortholog is 100%.

Group of orthologs #850. Best score 127 bits
Score difference with first non-orthologous sequence - C.remanei:127 P.jiroveci:127

E3M6F1              	100.00%		L0PD14              	100.00%
E3NR49              	84.94%		
Bootstrap support for E3M6F1 as seed ortholog is 100%.
Bootstrap support for L0PD14 as seed ortholog is 100%.

Group of orthologs #851. Best score 127 bits
Score difference with first non-orthologous sequence - C.remanei:127 P.jiroveci:127

E3LLY5              	100.00%		L0PAN5              	100.00%
Bootstrap support for E3LLY5 as seed ortholog is 100%.
Bootstrap support for L0PAN5 as seed ortholog is 100%.

Group of orthologs #852. Best score 126 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:63

E3M9Z5              	100.00%		L0PD33              	100.00%
E3M101              	31.20%		
Bootstrap support for E3M9Z5 as seed ortholog is 87%.
Bootstrap support for L0PD33 as seed ortholog is 97%.

Group of orthologs #853. Best score 126 bits
Score difference with first non-orthologous sequence - C.remanei:126 P.jiroveci:126

E3LGX2              	100.00%		L0PHD0              	100.00%
Bootstrap support for E3LGX2 as seed ortholog is 100%.
Bootstrap support for L0PHD0 as seed ortholog is 100%.

Group of orthologs #854. Best score 126 bits
Score difference with first non-orthologous sequence - C.remanei:126 P.jiroveci:126

E3LUL1              	100.00%		L0P8V3              	100.00%
Bootstrap support for E3LUL1 as seed ortholog is 100%.
Bootstrap support for L0P8V3 as seed ortholog is 100%.

Group of orthologs #855. Best score 126 bits
Score difference with first non-orthologous sequence - C.remanei:126 P.jiroveci:126

E3LWW9              	100.00%		L0PEV4              	100.00%
Bootstrap support for E3LWW9 as seed ortholog is 100%.
Bootstrap support for L0PEV4 as seed ortholog is 100%.

Group of orthologs #856. Best score 126 bits
Score difference with first non-orthologous sequence - C.remanei:126 P.jiroveci:126

E3M646              	100.00%		L0P800              	100.00%
Bootstrap support for E3M646 as seed ortholog is 100%.
Bootstrap support for L0P800 as seed ortholog is 100%.

Group of orthologs #857. Best score 126 bits
Score difference with first non-orthologous sequence - C.remanei:126 P.jiroveci:126

E3NML5              	100.00%		L0PF62              	100.00%
Bootstrap support for E3NML5 as seed ortholog is 100%.
Bootstrap support for L0PF62 as seed ortholog is 100%.

Group of orthologs #858. Best score 125 bits
Score difference with first non-orthologous sequence - C.remanei:125 P.jiroveci:125

E3MF81              	100.00%		L0P8S1              	100.00%
E3LFP5              	15.54%		
Bootstrap support for E3MF81 as seed ortholog is 100%.
Bootstrap support for L0P8S1 as seed ortholog is 100%.

Group of orthologs #859. Best score 124 bits
Score difference with first non-orthologous sequence - C.remanei:124 P.jiroveci:124

E3M7Y3              	100.00%		L0PH54              	100.00%
E3NLF5              	66.67%		
Bootstrap support for E3M7Y3 as seed ortholog is 100%.
Bootstrap support for L0PH54 as seed ortholog is 100%.

Group of orthologs #860. Best score 124 bits
Score difference with first non-orthologous sequence - C.remanei:124 P.jiroveci:124

E3LZF7              	100.00%		L0PBL9              	100.00%
Bootstrap support for E3LZF7 as seed ortholog is 100%.
Bootstrap support for L0PBL9 as seed ortholog is 100%.

Group of orthologs #861. Best score 124 bits
Score difference with first non-orthologous sequence - C.remanei:124 P.jiroveci:124

E3N9G8              	100.00%		L0PCZ5              	100.00%
Bootstrap support for E3N9G8 as seed ortholog is 100%.
Bootstrap support for L0PCZ5 as seed ortholog is 100%.

Group of orthologs #862. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:123

E3N336              	100.00%		L0PCT4              	100.00%
E3MFR3              	55.78%		
E3LVW1              	7.89%		
E3MBM0              	7.48%		
E3N089              	6.39%		
Bootstrap support for E3N336 as seed ortholog is 87%.
Bootstrap support for L0PCT4 as seed ortholog is 100%.

Group of orthologs #863. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:75 P.jiroveci:123

E3LPR3              	100.00%		L0P984              	100.00%
E3LUT4              	24.89%		
E3LUT3              	21.56%		
Bootstrap support for E3LPR3 as seed ortholog is 97%.
Bootstrap support for L0P984 as seed ortholog is 100%.

Group of orthologs #864. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:123

E3LS73              	100.00%		L0PEI9              	100.00%
E3N9V8              	100.00%		
E3LS74              	46.60%		
Bootstrap support for E3LS73 as seed ortholog is 100%.
Bootstrap support for E3N9V8 as seed ortholog is 100%.
Bootstrap support for L0PEI9 as seed ortholog is 100%.

Group of orthologs #865. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:77

E3LMW9              	100.00%		L0PD77              	100.00%
E3NX54              	14.37%		
Bootstrap support for E3LMW9 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 99%.

Group of orthologs #866. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:50

E3MF86              	100.00%		L0PAW2              	100.00%
                    	       		L0P9F3              	6.08%
Bootstrap support for E3MF86 as seed ortholog is 100%.
Bootstrap support for L0PAW2 as seed ortholog is 88%.

Group of orthologs #867. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:48

E3MNR0              	100.00%		L0PFD8              	100.00%
E3MX14              	5.04%		
Bootstrap support for E3MNR0 as seed ortholog is 100%.
Bootstrap support for L0PFD8 as seed ortholog is 89%.

Group of orthologs #868. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:123

E3LGD1              	100.00%		L0PG87              	100.00%
Bootstrap support for E3LGD1 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #869. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:123

E3LT24              	100.00%		L0PG59              	100.00%
Bootstrap support for E3LT24 as seed ortholog is 98%.
Bootstrap support for L0PG59 as seed ortholog is 100%.

Group of orthologs #870. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:123

E3MFN3              	100.00%		L0PAA1              	100.00%
Bootstrap support for E3MFN3 as seed ortholog is 100%.
Bootstrap support for L0PAA1 as seed ortholog is 100%.

Group of orthologs #871. Best score 123 bits
Score difference with first non-orthologous sequence - C.remanei:123 P.jiroveci:123

E3NFI5              	100.00%		L0PG38              	100.00%
Bootstrap support for E3NFI5 as seed ortholog is 100%.
Bootstrap support for L0PG38 as seed ortholog is 100%.

Group of orthologs #872. Best score 122 bits
Score difference with first non-orthologous sequence - C.remanei:122 P.jiroveci:122

E3LM27              	100.00%		L0PE18              	100.00%
E3LF28              	19.73%		
E3LF29              	16.12%		
E3MKC8              	14.69%		
Bootstrap support for E3LM27 as seed ortholog is 100%.
Bootstrap support for L0PE18 as seed ortholog is 100%.

Group of orthologs #873. Best score 122 bits
Score difference with first non-orthologous sequence - C.remanei:122 P.jiroveci:122

E3NCN0              	100.00%		L0PH67              	100.00%
E3NNJ5              	27.60%		L0P9J6              	95.78%
Bootstrap support for E3NCN0 as seed ortholog is 100%.
Bootstrap support for L0PH67 as seed ortholog is 100%.

Group of orthologs #874. Best score 122 bits
Score difference with first non-orthologous sequence - C.remanei:122 P.jiroveci:122

E3LLY2              	100.00%		L0P8L2              	100.00%
Bootstrap support for E3LLY2 as seed ortholog is 100%.
Bootstrap support for L0P8L2 as seed ortholog is 100%.

Group of orthologs #875. Best score 122 bits
Score difference with first non-orthologous sequence - C.remanei:15 P.jiroveci:122

E3LKV1              	100.00%		L0PG24              	100.00%
Bootstrap support for E3LKV1 as seed ortholog is 61%.
Alternative seed ortholog is E3MGH9 (15 bits away from this cluster)
Bootstrap support for L0PG24 as seed ortholog is 100%.

Group of orthologs #876. Best score 122 bits
Score difference with first non-orthologous sequence - C.remanei:122 P.jiroveci:122

E3LZ74              	100.00%		L0PCH6              	100.00%
Bootstrap support for E3LZ74 as seed ortholog is 100%.
Bootstrap support for L0PCH6 as seed ortholog is 100%.

Group of orthologs #877. Best score 122 bits
Score difference with first non-orthologous sequence - C.remanei:122 P.jiroveci:122

E3NAB8              	100.00%		L0PFZ8              	100.00%
Bootstrap support for E3NAB8 as seed ortholog is 100%.
Bootstrap support for L0PFZ8 as seed ortholog is 100%.

Group of orthologs #878. Best score 121 bits
Score difference with first non-orthologous sequence - C.remanei:30 P.jiroveci:121

E3LLV1              	100.00%		L0PDY2              	100.00%
E3NE38              	18.76%		
Bootstrap support for E3LLV1 as seed ortholog is 82%.
Bootstrap support for L0PDY2 as seed ortholog is 100%.

Group of orthologs #879. Best score 121 bits
Score difference with first non-orthologous sequence - C.remanei:28 P.jiroveci:121

E3LXX3              	100.00%		L0PBC7              	100.00%
Bootstrap support for E3LXX3 as seed ortholog is 76%.
Bootstrap support for L0PBC7 as seed ortholog is 100%.

Group of orthologs #880. Best score 120 bits
Score difference with first non-orthologous sequence - C.remanei:120 P.jiroveci:120

E3LLS8              	100.00%		L0P7W4              	100.00%
Bootstrap support for E3LLS8 as seed ortholog is 100%.
Bootstrap support for L0P7W4 as seed ortholog is 100%.

Group of orthologs #881. Best score 120 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:120

E3M4A4              	100.00%		L0PDN5              	100.00%
Bootstrap support for E3M4A4 as seed ortholog is 99%.
Bootstrap support for L0PDN5 as seed ortholog is 100%.

Group of orthologs #882. Best score 120 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:120

E3NN26              	100.00%		L0PAL2              	100.00%
Bootstrap support for E3NN26 as seed ortholog is 98%.
Bootstrap support for L0PAL2 as seed ortholog is 100%.

Group of orthologs #883. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:119 P.jiroveci:119

E3M7U5              	100.00%		L0PI55              	100.00%
                    	       		L0P840              	84.30%
Bootstrap support for E3M7U5 as seed ortholog is 100%.
Bootstrap support for L0PI55 as seed ortholog is 100%.

Group of orthologs #884. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:119 P.jiroveci:119

E3MXE7              	100.00%		L0P7D0              	100.00%
E3LCV7              	10.39%		
Bootstrap support for E3MXE7 as seed ortholog is 100%.
Bootstrap support for L0P7D0 as seed ortholog is 100%.

Group of orthologs #885. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:119 P.jiroveci:119

E3LSV4              	100.00%		L0PEC9              	100.00%
Bootstrap support for E3LSV4 as seed ortholog is 100%.
Bootstrap support for L0PEC9 as seed ortholog is 100%.

Group of orthologs #886. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:119

E3MHE1              	100.00%		L0PF38              	100.00%
Bootstrap support for E3MHE1 as seed ortholog is 97%.
Bootstrap support for L0PF38 as seed ortholog is 100%.

Group of orthologs #887. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:67 P.jiroveci:78

E3MSW6              	100.00%		L0P948              	100.00%
Bootstrap support for E3MSW6 as seed ortholog is 99%.
Bootstrap support for L0P948 as seed ortholog is 99%.

Group of orthologs #888. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:118 P.jiroveci:118

E3LI65              	100.00%		L0P6R0              	100.00%
Bootstrap support for E3LI65 as seed ortholog is 100%.
Bootstrap support for L0P6R0 as seed ortholog is 100%.

Group of orthologs #889. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:118 P.jiroveci:118

E3LSV3              	100.00%		L0PEK8              	100.00%
Bootstrap support for E3LSV3 as seed ortholog is 100%.
Bootstrap support for L0PEK8 as seed ortholog is 100%.

Group of orthologs #890. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:34 P.jiroveci:118

E3LY75              	100.00%		L0PE36              	100.00%
Bootstrap support for E3LY75 as seed ortholog is 74%.
Alternative seed ortholog is E3LEG0 (34 bits away from this cluster)
Bootstrap support for L0PE36 as seed ortholog is 100%.

Group of orthologs #891. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:118 P.jiroveci:118

E3MGK1              	100.00%		L0P805              	100.00%
Bootstrap support for E3MGK1 as seed ortholog is 100%.
Bootstrap support for L0P805 as seed ortholog is 100%.

Group of orthologs #892. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3MRJ1              	100.00%		L0PBR1              	100.00%
E3MRJ2              	68.54%		
E3NNU7              	64.04%		
E3M689              	34.83%		
E3LMT1              	19.10%		
Bootstrap support for E3MRJ1 as seed ortholog is 100%.
Bootstrap support for L0PBR1 as seed ortholog is 100%.

Group of orthologs #893. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3NLA4              	100.00%		L0PD86              	100.00%
E3NST3              	60.34%		
Bootstrap support for E3NLA4 as seed ortholog is 100%.
Bootstrap support for L0PD86 as seed ortholog is 100%.

Group of orthologs #894. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:65

E3LGJ4              	100.00%		L0PFH3              	100.00%
Bootstrap support for E3LGJ4 as seed ortholog is 100%.
Bootstrap support for L0PFH3 as seed ortholog is 96%.

Group of orthologs #895. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3LVU4              	100.00%		L0PBU1              	100.00%
Bootstrap support for E3LVU4 as seed ortholog is 100%.
Bootstrap support for L0PBU1 as seed ortholog is 100%.

Group of orthologs #896. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3LXE3              	100.00%		L0PFZ3              	100.00%
Bootstrap support for E3LXE3 as seed ortholog is 100%.
Bootstrap support for L0PFZ3 as seed ortholog is 100%.

Group of orthologs #897. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3M8Z9              	100.00%		L0P940              	100.00%
Bootstrap support for E3M8Z9 as seed ortholog is 100%.
Bootstrap support for L0P940 as seed ortholog is 100%.

Group of orthologs #898. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3MGE8              	100.00%		L0PCI2              	100.00%
Bootstrap support for E3MGE8 as seed ortholog is 100%.
Bootstrap support for L0PCI2 as seed ortholog is 100%.

Group of orthologs #899. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3MTY5              	100.00%		L0PEM2              	100.00%
Bootstrap support for E3MTY5 as seed ortholog is 100%.
Bootstrap support for L0PEM2 as seed ortholog is 100%.

Group of orthologs #900. Best score 117 bits
Score difference with first non-orthologous sequence - C.remanei:117 P.jiroveci:117

E3MXM4              	100.00%		L0PHM1              	100.00%
Bootstrap support for E3MXM4 as seed ortholog is 100%.
Bootstrap support for L0PHM1 as seed ortholog is 100%.

Group of orthologs #901. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:28 P.jiroveci:27

E3MPJ9              	100.00%		L0P9X1              	100.00%
E3NHK4              	17.87%		
E3NHK3              	17.35%		
E3LKU9              	7.84%		
Bootstrap support for E3MPJ9 as seed ortholog is 76%.
Bootstrap support for L0P9X1 as seed ortholog is 75%.

Group of orthologs #902. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:54 P.jiroveci:116

E3LZH8              	100.00%		L0PG76              	100.00%
                    	       		L0PE70              	59.00%
Bootstrap support for E3LZH8 as seed ortholog is 92%.
Bootstrap support for L0PG76 as seed ortholog is 100%.

Group of orthologs #903. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:19 P.jiroveci:116

E3M9X8              	100.00%		L0P903              	100.00%
E3LZF6              	47.85%		
Bootstrap support for E3M9X8 as seed ortholog is 70%.
Alternative seed ortholog is E3M7Q3 (19 bits away from this cluster)
Bootstrap support for L0P903 as seed ortholog is 100%.

Group of orthologs #904. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3MAS5              	100.00%		L0PH23              	100.00%
E3MFH7              	31.79%		
Bootstrap support for E3MAS5 as seed ortholog is 100%.
Bootstrap support for L0PH23 as seed ortholog is 100%.

Group of orthologs #905. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3N5R3              	100.00%		L0P7U6              	100.00%
E3NTD3              	100.00%		
Bootstrap support for E3N5R3 as seed ortholog is 100%.
Bootstrap support for E3NTD3 as seed ortholog is 100%.
Bootstrap support for L0P7U6 as seed ortholog is 100%.

Group of orthologs #906. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3NKV6              	100.00%		L0PGP1              	100.00%
E3MLW9              	18.10%		
Bootstrap support for E3NKV6 as seed ortholog is 100%.
Bootstrap support for L0PGP1 as seed ortholog is 100%.

Group of orthologs #907. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3LTB8              	100.00%		L0P8K4              	100.00%
Bootstrap support for E3LTB8 as seed ortholog is 100%.
Bootstrap support for L0P8K4 as seed ortholog is 100%.

Group of orthologs #908. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3LY32              	100.00%		L0PBK0              	100.00%
Bootstrap support for E3LY32 as seed ortholog is 100%.
Bootstrap support for L0PBK0 as seed ortholog is 100%.

Group of orthologs #909. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3N332              	100.00%		L0P8Z4              	100.00%
Bootstrap support for E3N332 as seed ortholog is 100%.
Bootstrap support for L0P8Z4 as seed ortholog is 100%.

Group of orthologs #910. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 P.jiroveci:116

E3NEH2              	100.00%		L0PCC6              	100.00%
Bootstrap support for E3NEH2 as seed ortholog is 100%.
Bootstrap support for L0PCC6 as seed ortholog is 100%.

Group of orthologs #911. Best score 115 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:115

E3LR05              	100.00%		L0P990              	100.00%
E3LRD1              	8.14%		
Bootstrap support for E3LR05 as seed ortholog is 99%.
Bootstrap support for L0P990 as seed ortholog is 100%.

Group of orthologs #912. Best score 115 bits
Score difference with first non-orthologous sequence - C.remanei:115 P.jiroveci:115

E3M7Q1              	100.00%		L0P7V4              	100.00%
E3NQW8              	97.81%		
Bootstrap support for E3M7Q1 as seed ortholog is 100%.
Bootstrap support for L0P7V4 as seed ortholog is 100%.

Group of orthologs #913. Best score 115 bits
Score difference with first non-orthologous sequence - C.remanei:115 P.jiroveci:115

E3LQQ0              	100.00%		L0PBD5              	100.00%
Bootstrap support for E3LQQ0 as seed ortholog is 100%.
Bootstrap support for L0PBD5 as seed ortholog is 100%.

Group of orthologs #914. Best score 115 bits
Score difference with first non-orthologous sequence - C.remanei:115 P.jiroveci:115

E3NCI1              	100.00%		L0PFS7              	100.00%
Bootstrap support for E3NCI1 as seed ortholog is 100%.
Bootstrap support for L0PFS7 as seed ortholog is 100%.

Group of orthologs #915. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 P.jiroveci:114

E3LYR8              	100.00%		L0PE88              	100.00%
E3LDX8              	5.21%		
Bootstrap support for E3LYR8 as seed ortholog is 100%.
Bootstrap support for L0PE88 as seed ortholog is 100%.

Group of orthologs #916. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 P.jiroveci:114

E3NLX4              	100.00%		L0PF42              	100.00%
                    	       		L0PD01              	98.58%
Bootstrap support for E3NLX4 as seed ortholog is 100%.
Bootstrap support for L0PF42 as seed ortholog is 100%.

Group of orthologs #917. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 P.jiroveci:114

E3LXI9              	100.00%		L0PD00              	100.00%
Bootstrap support for E3LXI9 as seed ortholog is 100%.
Bootstrap support for L0PD00 as seed ortholog is 100%.

Group of orthologs #918. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 P.jiroveci:114

E3M5V7              	100.00%		L0P733              	100.00%
Bootstrap support for E3M5V7 as seed ortholog is 100%.
Bootstrap support for L0P733 as seed ortholog is 100%.

Group of orthologs #919. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 P.jiroveci:114

E3N5V5              	100.00%		L0PBK2              	100.00%
Bootstrap support for E3N5V5 as seed ortholog is 100%.
Bootstrap support for L0PBK2 as seed ortholog is 100%.

Group of orthologs #920. Best score 113 bits
Score difference with first non-orthologous sequence - C.remanei:113 P.jiroveci:113

E3LFH7              	100.00%		L0P938              	100.00%
Bootstrap support for E3LFH7 as seed ortholog is 100%.
Bootstrap support for L0P938 as seed ortholog is 100%.

Group of orthologs #921. Best score 113 bits
Score difference with first non-orthologous sequence - C.remanei:113 P.jiroveci:113

E3LGK4              	100.00%		L0P9Z5              	100.00%
Bootstrap support for E3LGK4 as seed ortholog is 100%.
Bootstrap support for L0P9Z5 as seed ortholog is 100%.

Group of orthologs #922. Best score 113 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:113

E3NII9              	100.00%		L0P7E2              	100.00%
Bootstrap support for E3NII9 as seed ortholog is 99%.
Bootstrap support for L0P7E2 as seed ortholog is 100%.

Group of orthologs #923. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:7 P.jiroveci:20

E3MDW2              	100.00%		L0PGL7              	100.00%
E3MV63              	57.51%		
E3MDI4              	11.72%		
E3MUP6              	11.72%		
E3MUP5              	9.52%		
E3MJJ2              	7.51%		
E3MKL4              	6.78%		
E3NEZ4              	6.23%		
E3MKL5              	6.23%		
E3NEY9              	5.86%		
Bootstrap support for E3MDW2 as seed ortholog is 59%.
Alternative seed ortholog is E3MTZ8 (7 bits away from this cluster)
Bootstrap support for L0PGL7 as seed ortholog is 71%.
Alternative seed ortholog is L0PAR1 (20 bits away from this cluster)

Group of orthologs #924. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:10

E3MCJ6              	100.00%		L0PCJ0              	100.00%
Bootstrap support for E3MCJ6 as seed ortholog is 100%.
Bootstrap support for L0PCJ0 as seed ortholog is 52%.
Alternative seed ortholog is L0PGZ6 (10 bits away from this cluster)

Group of orthologs #925. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:112

E3MNK8              	100.00%		L0PCN2              	100.00%
Bootstrap support for E3MNK8 as seed ortholog is 100%.
Bootstrap support for L0PCN2 as seed ortholog is 100%.

Group of orthologs #926. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:112

E3MSP8              	100.00%		L0PF16              	100.00%
Bootstrap support for E3MSP8 as seed ortholog is 100%.
Bootstrap support for L0PF16 as seed ortholog is 100%.

Group of orthologs #927. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:112

E3N4R7              	100.00%		L0PCK2              	100.00%
Bootstrap support for E3N4R7 as seed ortholog is 100%.
Bootstrap support for L0PCK2 as seed ortholog is 100%.

Group of orthologs #928. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:112

E3NH81              	100.00%		L0PHH2              	100.00%
Bootstrap support for E3NH81 as seed ortholog is 100%.
Bootstrap support for L0PHH2 as seed ortholog is 100%.

Group of orthologs #929. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 P.jiroveci:63

E3NMS5              	100.00%		L0PCA3              	100.00%
Bootstrap support for E3NMS5 as seed ortholog is 100%.
Bootstrap support for L0PCA3 as seed ortholog is 97%.

Group of orthologs #930. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:19 P.jiroveci:111

E3N7Q9              	100.00%		L0P6Z0              	100.00%
E3N402              	5.87%		
E3NMV3              	5.55%		
E3N401              	5.49%		
Bootstrap support for E3N7Q9 as seed ortholog is 84%.
Bootstrap support for L0P6Z0 as seed ortholog is 100%.

Group of orthologs #931. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:111 P.jiroveci:111

E3LES3              	100.00%		L0PAA9              	100.00%
E3LFC3              	5.63%		L0PBW0              	6.41%
Bootstrap support for E3LES3 as seed ortholog is 100%.
Bootstrap support for L0PAA9 as seed ortholog is 100%.

Group of orthologs #932. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:111 P.jiroveci:111

E3LCP8              	100.00%		L0PBI8              	100.00%
Bootstrap support for E3LCP8 as seed ortholog is 100%.
Bootstrap support for L0PBI8 as seed ortholog is 100%.

Group of orthologs #933. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:63

E3LG70              	100.00%		L0PEV3              	100.00%
Bootstrap support for E3LG70 as seed ortholog is 97%.
Bootstrap support for L0PEV3 as seed ortholog is 97%.

Group of orthologs #934. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:111 P.jiroveci:111

E3MR23              	100.00%		L0PAV4              	100.00%
Bootstrap support for E3MR23 as seed ortholog is 100%.
Bootstrap support for L0PAV4 as seed ortholog is 100%.

Group of orthologs #935. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:111 P.jiroveci:111

E3N382              	100.00%		L0PE97              	100.00%
Bootstrap support for E3N382 as seed ortholog is 100%.
Bootstrap support for L0PE97 as seed ortholog is 100%.

Group of orthologs #936. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3LCJ6              	100.00%		L0PFB3              	100.00%
E3MUL4              	16.09%		
E3MUL5              	5.67%		
Bootstrap support for E3LCJ6 as seed ortholog is 100%.
Bootstrap support for L0PFB3 as seed ortholog is 100%.

Group of orthologs #937. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3LM05              	100.00%		L0P7A4              	100.00%
Bootstrap support for E3LM05 as seed ortholog is 100%.
Bootstrap support for L0P7A4 as seed ortholog is 100%.

Group of orthologs #938. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3LIK6              	100.00%		L0PC50              	100.00%
Bootstrap support for E3LIK6 as seed ortholog is 100%.
Bootstrap support for L0PC50 as seed ortholog is 100%.

Group of orthologs #939. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:110

E3LPC6              	100.00%		L0P9A1              	100.00%
Bootstrap support for E3LPC6 as seed ortholog is 99%.
Bootstrap support for L0P9A1 as seed ortholog is 100%.

Group of orthologs #940. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3LQR9              	100.00%		L0PC08              	100.00%
Bootstrap support for E3LQR9 as seed ortholog is 100%.
Bootstrap support for L0PC08 as seed ortholog is 100%.

Group of orthologs #941. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3LVW0              	100.00%		L0P872              	100.00%
Bootstrap support for E3LVW0 as seed ortholog is 100%.
Bootstrap support for L0P872 as seed ortholog is 100%.

Group of orthologs #942. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3LWY7              	100.00%		L0PAE9              	100.00%
Bootstrap support for E3LWY7 as seed ortholog is 100%.
Bootstrap support for L0PAE9 as seed ortholog is 100%.

Group of orthologs #943. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3M494              	100.00%		L0PEB8              	100.00%
Bootstrap support for E3M494 as seed ortholog is 100%.
Bootstrap support for L0PEB8 as seed ortholog is 100%.

Group of orthologs #944. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:110 P.jiroveci:110

E3MT04              	100.00%		L0PFE1              	100.00%
Bootstrap support for E3MT04 as seed ortholog is 100%.
Bootstrap support for L0PFE1 as seed ortholog is 100%.

Group of orthologs #945. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:67 P.jiroveci:110

E3NLB5              	100.00%		L0P9L0              	100.00%
Bootstrap support for E3NLB5 as seed ortholog is 99%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #946. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:62

E3LXB9              	100.00%		L0PDB2              	100.00%
Bootstrap support for E3LXB9 as seed ortholog is 89%.
Bootstrap support for L0PDB2 as seed ortholog is 91%.

Group of orthologs #947. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3LZU7              	100.00%		L0PFG9              	100.00%
Bootstrap support for E3LZU7 as seed ortholog is 100%.
Bootstrap support for L0PFG9 as seed ortholog is 100%.

Group of orthologs #948. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3M681              	100.00%		L0P9A7              	100.00%
Bootstrap support for E3M681 as seed ortholog is 100%.
Bootstrap support for L0P9A7 as seed ortholog is 100%.

Group of orthologs #949. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3MCL9              	100.00%		L0P901              	100.00%
Bootstrap support for E3MCL9 as seed ortholog is 100%.
Bootstrap support for L0P901 as seed ortholog is 100%.

Group of orthologs #950. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3MD02              	100.00%		L0PAK0              	100.00%
Bootstrap support for E3MD02 as seed ortholog is 100%.
Bootstrap support for L0PAK0 as seed ortholog is 100%.

Group of orthologs #951. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3MKU0              	100.00%		L0PFP3              	100.00%
Bootstrap support for E3MKU0 as seed ortholog is 100%.
Bootstrap support for L0PFP3 as seed ortholog is 100%.

Group of orthologs #952. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:109

E3NCN7              	100.00%		L0PFV4              	100.00%
Bootstrap support for E3NCN7 as seed ortholog is 99%.
Bootstrap support for L0PFV4 as seed ortholog is 100%.

Group of orthologs #953. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3NQ96              	100.00%		L0PBH8              	100.00%
Bootstrap support for E3NQ96 as seed ortholog is 100%.
Bootstrap support for L0PBH8 as seed ortholog is 100%.

Group of orthologs #954. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:109

E3NMY0              	100.00%		L0PFQ6              	100.00%
Bootstrap support for E3NMY0 as seed ortholog is 75%.
Bootstrap support for L0PFQ6 as seed ortholog is 100%.

Group of orthologs #955. Best score 109 bits
Score difference with first non-orthologous sequence - C.remanei:109 P.jiroveci:109

E3NNY9              	100.00%		L0PG46              	100.00%
Bootstrap support for E3NNY9 as seed ortholog is 100%.
Bootstrap support for L0PG46 as seed ortholog is 100%.

Group of orthologs #956. Best score 108 bits
Score difference with first non-orthologous sequence - C.remanei:2 P.jiroveci:108

E3LGM2              	100.00%		L0PE21              	100.00%
E3LGM3              	44.79%		
Bootstrap support for E3LGM2 as seed ortholog is 55%.
Alternative seed ortholog is E3LE18 (2 bits away from this cluster)
Bootstrap support for L0PE21 as seed ortholog is 100%.

Group of orthologs #957. Best score 108 bits
Score difference with first non-orthologous sequence - C.remanei:29 P.jiroveci:108

E3LCH5              	100.00%		L0PA67              	100.00%
Bootstrap support for E3LCH5 as seed ortholog is 87%.
Bootstrap support for L0PA67 as seed ortholog is 100%.

Group of orthologs #958. Best score 108 bits
Score difference with first non-orthologous sequence - C.remanei:108 P.jiroveci:108

E3LN41              	100.00%		L0PA07              	100.00%
Bootstrap support for E3LN41 as seed ortholog is 100%.
Bootstrap support for L0PA07 as seed ortholog is 100%.

Group of orthologs #959. Best score 108 bits
Score difference with first non-orthologous sequence - C.remanei:108 P.jiroveci:108

E3LVF4              	100.00%		L0PCI9              	100.00%
Bootstrap support for E3LVF4 as seed ortholog is 100%.
Bootstrap support for L0PCI9 as seed ortholog is 100%.

Group of orthologs #960. Best score 108 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:108

E3MSN5              	100.00%		L0PBZ4              	100.00%
Bootstrap support for E3MSN5 as seed ortholog is 91%.
Bootstrap support for L0PBZ4 as seed ortholog is 100%.

Group of orthologs #961. Best score 108 bits
Score difference with first non-orthologous sequence - C.remanei:108 P.jiroveci:108

E3NFL4              	100.00%		L0PD96              	100.00%
Bootstrap support for E3NFL4 as seed ortholog is 100%.
Bootstrap support for L0PD96 as seed ortholog is 100%.

Group of orthologs #962. Best score 107 bits
Score difference with first non-orthologous sequence - C.remanei:107 P.jiroveci:107

E3N1J6              	100.00%		L0P9D5              	100.00%
Bootstrap support for E3N1J6 as seed ortholog is 100%.
Bootstrap support for L0P9D5 as seed ortholog is 100%.

Group of orthologs #963. Best score 107 bits
Score difference with first non-orthologous sequence - C.remanei:107 P.jiroveci:107

E3N4T2              	100.00%		L0P8D9              	100.00%
Bootstrap support for E3N4T2 as seed ortholog is 100%.
Bootstrap support for L0P8D9 as seed ortholog is 100%.

Group of orthologs #964. Best score 106 bits
Score difference with first non-orthologous sequence - C.remanei:106 P.jiroveci:106

E3LFN9              	100.00%		L0PG44              	100.00%
E3MY68              	98.50%		
Bootstrap support for E3LFN9 as seed ortholog is 100%.
Bootstrap support for L0PG44 as seed ortholog is 100%.

Group of orthologs #965. Best score 106 bits
Score difference with first non-orthologous sequence - C.remanei:106 P.jiroveci:106

E3LSE1              	100.00%		L0PBN7              	100.00%
Bootstrap support for E3LSE1 as seed ortholog is 100%.
Bootstrap support for L0PBN7 as seed ortholog is 100%.

Group of orthologs #966. Best score 106 bits
Score difference with first non-orthologous sequence - C.remanei:106 P.jiroveci:106

E3N2G6              	100.00%		L0PAY0              	100.00%
Bootstrap support for E3N2G6 as seed ortholog is 100%.
Bootstrap support for L0PAY0 as seed ortholog is 100%.

Group of orthologs #967. Best score 105 bits
Score difference with first non-orthologous sequence - C.remanei:105 P.jiroveci:105

E3LK36              	100.00%		L0P997              	100.00%
Bootstrap support for E3LK36 as seed ortholog is 100%.
Bootstrap support for L0P997 as seed ortholog is 100%.

Group of orthologs #968. Best score 105 bits
Score difference with first non-orthologous sequence - C.remanei:105 P.jiroveci:105

E3M745              	100.00%		L0PG04              	100.00%
Bootstrap support for E3M745 as seed ortholog is 100%.
Bootstrap support for L0PG04 as seed ortholog is 100%.

Group of orthologs #969. Best score 105 bits
Score difference with first non-orthologous sequence - C.remanei:105 P.jiroveci:105

E3ML60              	100.00%		L0PFH1              	100.00%
Bootstrap support for E3ML60 as seed ortholog is 100%.
Bootstrap support for L0PFH1 as seed ortholog is 100%.

Group of orthologs #970. Best score 105 bits
Score difference with first non-orthologous sequence - C.remanei:31 P.jiroveci:105

E3NH01              	100.00%		L0PCQ6              	100.00%
Bootstrap support for E3NH01 as seed ortholog is 77%.
Bootstrap support for L0PCQ6 as seed ortholog is 100%.

Group of orthologs #971. Best score 104 bits
Score difference with first non-orthologous sequence - C.remanei:104 P.jiroveci:104

E3N2G7              	100.00%		L0PFD0              	100.00%
E3NE29              	20.09%		
E3NE30              	20.09%		
Bootstrap support for E3N2G7 as seed ortholog is 100%.
Bootstrap support for L0PFD0 as seed ortholog is 100%.

Group of orthologs #972. Best score 104 bits
Score difference with first non-orthologous sequence - C.remanei:104 P.jiroveci:104

E3LF40              	100.00%		L0P9F5              	100.00%
Bootstrap support for E3LF40 as seed ortholog is 100%.
Bootstrap support for L0P9F5 as seed ortholog is 100%.

Group of orthologs #973. Best score 104 bits
Score difference with first non-orthologous sequence - C.remanei:104 P.jiroveci:104

E3MWD2              	100.00%		L0P7Y4              	100.00%
Bootstrap support for E3MWD2 as seed ortholog is 100%.
Bootstrap support for L0P7Y4 as seed ortholog is 100%.

Group of orthologs #974. Best score 103 bits
Score difference with first non-orthologous sequence - C.remanei:103 P.jiroveci:103

E3NE72              	100.00%		L0P939              	100.00%
E3MTQ2              	51.09%		L0PFG4              	88.49%
Bootstrap support for E3NE72 as seed ortholog is 100%.
Bootstrap support for L0P939 as seed ortholog is 100%.

Group of orthologs #975. Best score 103 bits
Score difference with first non-orthologous sequence - C.remanei:103 P.jiroveci:103

E3LXE7              	100.00%		L0PGB6              	100.00%
                    	       		L0PG66              	85.81%
Bootstrap support for E3LXE7 as seed ortholog is 100%.
Bootstrap support for L0PGB6 as seed ortholog is 100%.

Group of orthologs #976. Best score 103 bits
Score difference with first non-orthologous sequence - C.remanei:103 P.jiroveci:103

E3M6S2              	100.00%		L0PEW9              	100.00%
Bootstrap support for E3M6S2 as seed ortholog is 100%.
Bootstrap support for L0PEW9 as seed ortholog is 100%.

Group of orthologs #977. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:33 P.jiroveci:40

E3LTC7              	100.00%		L0PBE1              	100.00%
E3N4M5              	34.30%		
E3MML2              	11.19%		
E3MML3              	11.19%		
Bootstrap support for E3LTC7 as seed ortholog is 91%.
Bootstrap support for L0PBE1 as seed ortholog is 94%.

Group of orthologs #978. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:102 P.jiroveci:102

E3LPG2              	100.00%		L0PE76              	100.00%
Bootstrap support for E3LPG2 as seed ortholog is 100%.
Bootstrap support for L0PE76 as seed ortholog is 100%.

Group of orthologs #979. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:102 P.jiroveci:102

E3M095              	100.00%		L0PD90              	100.00%
Bootstrap support for E3M095 as seed ortholog is 100%.
Bootstrap support for L0PD90 as seed ortholog is 100%.

Group of orthologs #980. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:102 P.jiroveci:102

E3N6K6              	100.00%		L0PCX0              	100.00%
Bootstrap support for E3N6K6 as seed ortholog is 100%.
Bootstrap support for L0PCX0 as seed ortholog is 100%.

Group of orthologs #981. Best score 101 bits
Score difference with first non-orthologous sequence - C.remanei:101 P.jiroveci:101

E3M4U6              	100.00%		L0P935              	100.00%
Bootstrap support for E3M4U6 as seed ortholog is 100%.
Bootstrap support for L0P935 as seed ortholog is 100%.

Group of orthologs #982. Best score 101 bits
Score difference with first non-orthologous sequence - C.remanei:101 P.jiroveci:101

E3N311              	100.00%		L0P9Z6              	100.00%
Bootstrap support for E3N311 as seed ortholog is 100%.
Bootstrap support for L0P9Z6 as seed ortholog is 100%.

Group of orthologs #983. Best score 101 bits
Score difference with first non-orthologous sequence - C.remanei:101 P.jiroveci:101

E3NAA7              	100.00%		L0PBU9              	100.00%
Bootstrap support for E3NAA7 as seed ortholog is 100%.
Bootstrap support for L0PBU9 as seed ortholog is 100%.

Group of orthologs #984. Best score 100 bits
Score difference with first non-orthologous sequence - C.remanei:39 P.jiroveci:100

E3LVK9              	100.00%		L0P7T1              	100.00%
Bootstrap support for E3LVK9 as seed ortholog is 94%.
Bootstrap support for L0P7T1 as seed ortholog is 100%.

Group of orthologs #985. Best score 100 bits
Score difference with first non-orthologous sequence - C.remanei:100 P.jiroveci:100

E3LY68              	100.00%		L0PE05              	100.00%
Bootstrap support for E3LY68 as seed ortholog is 100%.
Bootstrap support for L0PE05 as seed ortholog is 100%.

Group of orthologs #986. Best score 100 bits
Score difference with first non-orthologous sequence - C.remanei:17 P.jiroveci:100

E3LZP8              	100.00%		L0PDF0              	100.00%
Bootstrap support for E3LZP8 as seed ortholog is 72%.
Alternative seed ortholog is E3MXL9 (17 bits away from this cluster)
Bootstrap support for L0PDF0 as seed ortholog is 100%.

Group of orthologs #987. Best score 100 bits
Score difference with first non-orthologous sequence - C.remanei:55 P.jiroveci:100

E3M6B0              	100.00%		L0PDX2              	100.00%
Bootstrap support for E3M6B0 as seed ortholog is 99%.
Bootstrap support for L0PDX2 as seed ortholog is 100%.

Group of orthologs #988. Best score 100 bits
Score difference with first non-orthologous sequence - C.remanei:100 P.jiroveci:100

E3NBS8              	100.00%		L0PDI3              	100.00%
Bootstrap support for E3NBS8 as seed ortholog is 100%.
Bootstrap support for L0PDI3 as seed ortholog is 100%.

Group of orthologs #989. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3MF33              	100.00%		L0PDG8              	100.00%
E3MLS5              	27.74%		
E3MLT5              	27.74%		
E3MLT2              	26.51%		
E3N034              	22.93%		
E3MF31              	22.71%		
E3NFT9              	17.23%		
Bootstrap support for E3MF33 as seed ortholog is 100%.
Bootstrap support for L0PDG8 as seed ortholog is 100%.

Group of orthologs #990. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3LXW9              	100.00%		L0P9S9              	100.00%
                    	       		L0PDT3              	45.66%
Bootstrap support for E3LXW9 as seed ortholog is 100%.
Bootstrap support for L0P9S9 as seed ortholog is 100%.

Group of orthologs #991. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3NI41              	100.00%		L0P9D1              	100.00%
E3LVS2              	7.97%		
Bootstrap support for E3NI41 as seed ortholog is 100%.
Bootstrap support for L0P9D1 as seed ortholog is 100%.

Group of orthologs #992. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3NJ75              	100.00%		L0PAK9              	100.00%
E3NU18              	100.00%		
Bootstrap support for E3NJ75 as seed ortholog is 100%.
Bootstrap support for E3NU18 as seed ortholog is 100%.
Bootstrap support for L0PAK9 as seed ortholog is 100%.

Group of orthologs #993. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3LSX9              	100.00%		L0P7G9              	100.00%
Bootstrap support for E3LSX9 as seed ortholog is 100%.
Bootstrap support for L0P7G9 as seed ortholog is 100%.

Group of orthologs #994. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3LQL0              	100.00%		L0PG13              	100.00%
Bootstrap support for E3LQL0 as seed ortholog is 100%.
Bootstrap support for L0PG13 as seed ortholog is 100%.

Group of orthologs #995. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:99

E3LXH2              	100.00%		L0P9E5              	100.00%
Bootstrap support for E3LXH2 as seed ortholog is 89%.
Bootstrap support for L0P9E5 as seed ortholog is 100%.

Group of orthologs #996. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3M4C9              	100.00%		L0PCZ2              	100.00%
Bootstrap support for E3M4C9 as seed ortholog is 100%.
Bootstrap support for L0PCZ2 as seed ortholog is 100%.

Group of orthologs #997. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3MI33              	100.00%		L0PET3              	100.00%
Bootstrap support for E3MI33 as seed ortholog is 100%.
Bootstrap support for L0PET3 as seed ortholog is 100%.

Group of orthologs #998. Best score 99 bits
Score difference with first non-orthologous sequence - C.remanei:99 P.jiroveci:99

E3MKR8              	100.00%		L0PDZ4              	100.00%
Bootstrap support for E3MKR8 as seed ortholog is 100%.
Bootstrap support for L0PDZ4 as seed ortholog is 100%.

Group of orthologs #999. Best score 98 bits
Score difference with first non-orthologous sequence - C.remanei:98 P.jiroveci:98

E3LRL9              	100.00%		L0P8Z0              	100.00%
                    	       		L0PC60              	96.95%
Bootstrap support for E3LRL9 as seed ortholog is 100%.
Bootstrap support for L0P8Z0 as seed ortholog is 100%.

Group of orthologs #1000. Best score 98 bits
Score difference with first non-orthologous sequence - C.remanei:98 P.jiroveci:98

E3LRF1              	100.00%		L0PII9              	100.00%
Bootstrap support for E3LRF1 as seed ortholog is 100%.
Bootstrap support for L0PII9 as seed ortholog is 100%.

Group of orthologs #1001. Best score 98 bits
Score difference with first non-orthologous sequence - C.remanei:98 P.jiroveci:98

E3M0N8              	100.00%		L0P9R5              	100.00%
Bootstrap support for E3M0N8 as seed ortholog is 100%.
Bootstrap support for L0P9R5 as seed ortholog is 100%.

Group of orthologs #1002. Best score 98 bits
Score difference with first non-orthologous sequence - C.remanei:98 P.jiroveci:98

E3MGG3              	100.00%		L0PDD4              	100.00%
Bootstrap support for E3MGG3 as seed ortholog is 100%.
Bootstrap support for L0PDD4 as seed ortholog is 100%.

Group of orthologs #1003. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:97 P.jiroveci:97

E3MVD5              	100.00%		L0PFD1              	100.00%
E3N6A5              	46.07%		
E3N6A7              	20.79%		
Bootstrap support for E3MVD5 as seed ortholog is 100%.
Bootstrap support for L0PFD1 as seed ortholog is 100%.

Group of orthologs #1004. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:97 P.jiroveci:97

E3LIP2              	100.00%		L0PDZ3              	100.00%
Bootstrap support for E3LIP2 as seed ortholog is 100%.
Bootstrap support for L0PDZ3 as seed ortholog is 100%.

Group of orthologs #1005. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:97 P.jiroveci:97

E3LQ55              	100.00%		L0PEL6              	100.00%
Bootstrap support for E3LQ55 as seed ortholog is 100%.
Bootstrap support for L0PEL6 as seed ortholog is 100%.

Group of orthologs #1006. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:48 P.jiroveci:97

E3M7K2              	100.00%		L0PD19              	100.00%
Bootstrap support for E3M7K2 as seed ortholog is 99%.
Bootstrap support for L0PD19 as seed ortholog is 100%.

Group of orthologs #1007. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:97 P.jiroveci:97

E3N9Z9              	100.00%		L0P995              	100.00%
Bootstrap support for E3N9Z9 as seed ortholog is 100%.
Bootstrap support for L0P995 as seed ortholog is 100%.

Group of orthologs #1008. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:97 P.jiroveci:97

E3NP39              	100.00%		L0PAR2              	100.00%
Bootstrap support for E3NP39 as seed ortholog is 100%.
Bootstrap support for L0PAR2 as seed ortholog is 100%.

Group of orthologs #1009. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:96 P.jiroveci:96

E3LP36              	100.00%		L0PET6              	100.00%
Bootstrap support for E3LP36 as seed ortholog is 100%.
Bootstrap support for L0PET6 as seed ortholog is 100%.

Group of orthologs #1010. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:96 P.jiroveci:96

E3LZ98              	100.00%		L0P8B5              	100.00%
Bootstrap support for E3LZ98 as seed ortholog is 100%.
Bootstrap support for L0P8B5 as seed ortholog is 100%.

Group of orthologs #1011. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:96

E3MI54              	100.00%		L0PCM4              	100.00%
Bootstrap support for E3MI54 as seed ortholog is 84%.
Bootstrap support for L0PCM4 as seed ortholog is 100%.

Group of orthologs #1012. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:96

E3MR97              	100.00%		L0PF67              	100.00%
Bootstrap support for E3MR97 as seed ortholog is 91%.
Bootstrap support for L0PF67 as seed ortholog is 100%.

Group of orthologs #1013. Best score 95 bits
Score difference with first non-orthologous sequence - C.remanei:11 P.jiroveci:95

E3N4J2              	100.00%		L0PAF2              	100.00%
E3MFC5              	88.30%		
Bootstrap support for E3N4J2 as seed ortholog is 60%.
Alternative seed ortholog is E3LFJ5 (11 bits away from this cluster)
Bootstrap support for L0PAF2 as seed ortholog is 100%.

Group of orthologs #1014. Best score 95 bits
Score difference with first non-orthologous sequence - C.remanei:95 P.jiroveci:95

E3LQG8              	100.00%		L0P8Q5              	100.00%
Bootstrap support for E3LQG8 as seed ortholog is 100%.
Bootstrap support for L0P8Q5 as seed ortholog is 100%.

Group of orthologs #1015. Best score 95 bits
Score difference with first non-orthologous sequence - C.remanei:95 P.jiroveci:95

E3LNW3              	100.00%		L0PD56              	100.00%
Bootstrap support for E3LNW3 as seed ortholog is 100%.
Bootstrap support for L0PD56 as seed ortholog is 100%.

Group of orthologs #1016. Best score 95 bits
Score difference with first non-orthologous sequence - C.remanei:95 P.jiroveci:95

E3MI38              	100.00%		L0P7Y1              	100.00%
Bootstrap support for E3MI38 as seed ortholog is 100%.
Bootstrap support for L0P7Y1 as seed ortholog is 100%.

Group of orthologs #1017. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3M5J0              	100.00%		L0PG73              	100.00%
E3NP64              	100.00%		
Bootstrap support for E3M5J0 as seed ortholog is 100%.
Bootstrap support for E3NP64 as seed ortholog is 100%.
Bootstrap support for L0PG73 as seed ortholog is 100%.

Group of orthologs #1018. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3LSW8              	100.00%		L0P9F1              	100.00%
Bootstrap support for E3LSW8 as seed ortholog is 100%.
Bootstrap support for L0P9F1 as seed ortholog is 100%.

Group of orthologs #1019. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3LW16              	100.00%		L0P7T7              	100.00%
Bootstrap support for E3LW16 as seed ortholog is 100%.
Bootstrap support for L0P7T7 as seed ortholog is 100%.

Group of orthologs #1020. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3LVY8              	100.00%		L0P9X0              	100.00%
Bootstrap support for E3LVY8 as seed ortholog is 100%.
Bootstrap support for L0P9X0 as seed ortholog is 100%.

Group of orthologs #1021. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3LXC6              	100.00%		L0PFK1              	100.00%
Bootstrap support for E3LXC6 as seed ortholog is 100%.
Bootstrap support for L0PFK1 as seed ortholog is 100%.

Group of orthologs #1022. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3M809              	100.00%		L0P7D7              	100.00%
Bootstrap support for E3M809 as seed ortholog is 100%.
Bootstrap support for L0P7D7 as seed ortholog is 100%.

Group of orthologs #1023. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3MD05              	100.00%		L0PD45              	100.00%
Bootstrap support for E3MD05 as seed ortholog is 100%.
Bootstrap support for L0PD45 as seed ortholog is 100%.

Group of orthologs #1024. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3MI91              	100.00%		L0PFZ7              	100.00%
Bootstrap support for E3MI91 as seed ortholog is 100%.
Bootstrap support for L0PFZ7 as seed ortholog is 100%.

Group of orthologs #1025. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:40 P.jiroveci:94

E3MKS5              	100.00%		L0PFA1              	100.00%
Bootstrap support for E3MKS5 as seed ortholog is 99%.
Bootstrap support for L0PFA1 as seed ortholog is 100%.

Group of orthologs #1026. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 P.jiroveci:94

E3MM93              	100.00%		L0PEH7              	100.00%
Bootstrap support for E3MM93 as seed ortholog is 100%.
Bootstrap support for L0PEH7 as seed ortholog is 100%.

Group of orthologs #1027. Best score 93 bits
Score difference with first non-orthologous sequence - C.remanei:17 P.jiroveci:34

E3LNA9              	100.00%		L0PD63              	100.00%
E3MQK7              	100.00%		
Bootstrap support for E3LNA9 as seed ortholog is 78%.
Bootstrap support for E3MQK7 as seed ortholog is 78%.
Bootstrap support for L0PD63 as seed ortholog is 92%.

Group of orthologs #1028. Best score 93 bits
Score difference with first non-orthologous sequence - C.remanei:93 P.jiroveci:93

E3LHP1              	100.00%		L0PHI8              	100.00%
Bootstrap support for E3LHP1 as seed ortholog is 100%.
Bootstrap support for L0PHI8 as seed ortholog is 100%.

Group of orthologs #1029. Best score 93 bits
Score difference with first non-orthologous sequence - C.remanei:93 P.jiroveci:93

E3MHT8              	100.00%		L0P7Q2              	100.00%
Bootstrap support for E3MHT8 as seed ortholog is 100%.
Bootstrap support for L0P7Q2 as seed ortholog is 100%.

Group of orthologs #1030. Best score 92 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:92

E3LFC2              	100.00%		L0PG28              	100.00%
Bootstrap support for E3LFC2 as seed ortholog is 100%.
Bootstrap support for L0PG28 as seed ortholog is 100%.

Group of orthologs #1031. Best score 92 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:92

E3LRY5              	100.00%		L0PFC3              	100.00%
Bootstrap support for E3LRY5 as seed ortholog is 100%.
Bootstrap support for L0PFC3 as seed ortholog is 100%.

Group of orthologs #1032. Best score 92 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:92

E3LXL1              	100.00%		L0P9U0              	100.00%
Bootstrap support for E3LXL1 as seed ortholog is 100%.
Bootstrap support for L0P9U0 as seed ortholog is 100%.

Group of orthologs #1033. Best score 92 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:92

E3M8G2              	100.00%		L0PCX3              	100.00%
Bootstrap support for E3M8G2 as seed ortholog is 100%.
Bootstrap support for L0PCX3 as seed ortholog is 100%.

Group of orthologs #1034. Best score 92 bits
Score difference with first non-orthologous sequence - C.remanei:26 P.jiroveci:92

E3MCW7              	100.00%		L0PA97              	100.00%
Bootstrap support for E3MCW7 as seed ortholog is 87%.
Bootstrap support for L0PA97 as seed ortholog is 100%.

Group of orthologs #1035. Best score 92 bits
Score difference with first non-orthologous sequence - C.remanei:92 P.jiroveci:92

E3MSE8              	100.00%		L0PEF7              	100.00%
Bootstrap support for E3MSE8 as seed ortholog is 100%.
Bootstrap support for L0PEF7 as seed ortholog is 100%.

Group of orthologs #1036. Best score 91 bits
Score difference with first non-orthologous sequence - C.remanei:39 P.jiroveci:91

E3NDI0              	100.00%		L0P8U3              	100.00%
E3NQP9              	100.00%		L0PCN8              	100.00%
E3LED0              	23.51%		
Bootstrap support for E3NDI0 as seed ortholog is 88%.
Bootstrap support for E3NQP9 as seed ortholog is 87%.
Bootstrap support for L0P8U3 as seed ortholog is 100%.
Bootstrap support for L0PCN8 as seed ortholog is 100%.

Group of orthologs #1037. Best score 91 bits
Score difference with first non-orthologous sequence - C.remanei:91 P.jiroveci:91

E3LN40              	100.00%		L0PAT4              	100.00%
Bootstrap support for E3LN40 as seed ortholog is 100%.
Bootstrap support for L0PAT4 as seed ortholog is 100%.

Group of orthologs #1038. Best score 91 bits
Score difference with first non-orthologous sequence - C.remanei:91 P.jiroveci:91

E3LN44              	100.00%		L0PBK8              	100.00%
Bootstrap support for E3LN44 as seed ortholog is 100%.
Bootstrap support for L0PBK8 as seed ortholog is 100%.

Group of orthologs #1039. Best score 91 bits
Score difference with first non-orthologous sequence - C.remanei:91 P.jiroveci:91

E3LY25              	100.00%		L0P9H0              	100.00%
Bootstrap support for E3LY25 as seed ortholog is 100%.
Bootstrap support for L0P9H0 as seed ortholog is 100%.

Group of orthologs #1040. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:17 P.jiroveci:90

E3MAS4              	100.00%		L0PGP4              	100.00%
E3LJP0              	21.52%		
Bootstrap support for E3MAS4 as seed ortholog is 61%.
Alternative seed ortholog is E3LZ04 (17 bits away from this cluster)
Bootstrap support for L0PGP4 as seed ortholog is 100%.

Group of orthologs #1041. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:90 P.jiroveci:90

E3MY42              	100.00%		L0PGM7              	100.00%
                    	       		L0PGY6              	95.01%
Bootstrap support for E3MY42 as seed ortholog is 100%.
Bootstrap support for L0PGM7 as seed ortholog is 100%.

Group of orthologs #1042. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:90 P.jiroveci:90

E3LG68              	100.00%		L0P6Z5              	100.00%
Bootstrap support for E3LG68 as seed ortholog is 100%.
Bootstrap support for L0P6Z5 as seed ortholog is 100%.

Group of orthologs #1043. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:90 P.jiroveci:40

E3M803              	100.00%		L0PD23              	100.00%
Bootstrap support for E3M803 as seed ortholog is 100%.
Bootstrap support for L0PD23 as seed ortholog is 96%.

Group of orthologs #1044. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:45 P.jiroveci:90

E3MFQ3              	100.00%		L0P8G0              	100.00%
Bootstrap support for E3MFQ3 as seed ortholog is 98%.
Bootstrap support for L0P8G0 as seed ortholog is 100%.

Group of orthologs #1045. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 P.jiroveci:89

E3MQY6              	100.00%		L0PFE6              	100.00%
E3NS01              	98.33%		
Bootstrap support for E3MQY6 as seed ortholog is 100%.
Bootstrap support for L0PFE6 as seed ortholog is 100%.

Group of orthologs #1046. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:15 P.jiroveci:89

E3NQT6              	100.00%		L0P9W8              	100.00%
                    	       		L0PH99              	64.53%
Bootstrap support for E3NQT6 as seed ortholog is 65%.
Alternative seed ortholog is E3LZ02 (15 bits away from this cluster)
Bootstrap support for L0P9W8 as seed ortholog is 100%.

Group of orthologs #1047. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:42 P.jiroveci:89

E3LM65              	100.00%		L0PCQ5              	100.00%
Bootstrap support for E3LM65 as seed ortholog is 99%.
Bootstrap support for L0PCQ5 as seed ortholog is 100%.

Group of orthologs #1048. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 P.jiroveci:89

E3LXJ0              	100.00%		L0PA83              	100.00%
Bootstrap support for E3LXJ0 as seed ortholog is 100%.
Bootstrap support for L0PA83 as seed ortholog is 100%.

Group of orthologs #1049. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 P.jiroveci:89

E3LT62              	100.00%		L0PFP7              	100.00%
Bootstrap support for E3LT62 as seed ortholog is 100%.
Bootstrap support for L0PFP7 as seed ortholog is 100%.

Group of orthologs #1050. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 P.jiroveci:89

E3LZX0              	100.00%		L0P9M2              	100.00%
Bootstrap support for E3LZX0 as seed ortholog is 100%.
Bootstrap support for L0P9M2 as seed ortholog is 100%.

Group of orthologs #1051. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 P.jiroveci:89

E3N4S9              	100.00%		L0PDV9              	100.00%
Bootstrap support for E3N4S9 as seed ortholog is 100%.
Bootstrap support for L0PDV9 as seed ortholog is 100%.

Group of orthologs #1052. Best score 88 bits
Score difference with first non-orthologous sequence - C.remanei:88 P.jiroveci:88

E3MWY8              	100.00%		L0PFZ6              	100.00%
E3NQF2              	9.43%		L0P7L2              	96.79%
E3MMY0              	9.43%		
E3NC21              	8.92%		
E3NSM8              	8.42%		
Bootstrap support for E3MWY8 as seed ortholog is 100%.
Bootstrap support for L0PFZ6 as seed ortholog is 100%.

Group of orthologs #1053. Best score 88 bits
Score difference with first non-orthologous sequence - C.remanei:88 P.jiroveci:88

E3M3T7              	100.00%		L0P9M3              	100.00%
Bootstrap support for E3M3T7 as seed ortholog is 100%.
Bootstrap support for L0P9M3 as seed ortholog is 100%.

Group of orthologs #1054. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:43 P.jiroveci:87

E3MLF0              	100.00%		L0PBX5              	100.00%
E3MLD3              	97.84%		
E3ML32              	72.94%		
Bootstrap support for E3MLF0 as seed ortholog is 96%.
Bootstrap support for L0PBX5 as seed ortholog is 100%.

Group of orthologs #1055. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:87

E3M395              	100.00%		L0PDR9              	100.00%
                    	       		L0P8I3              	75.50%
Bootstrap support for E3M395 as seed ortholog is 100%.
Bootstrap support for L0PDR9 as seed ortholog is 100%.

Group of orthologs #1056. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:87

E3LR62              	100.00%		L0PBK9              	100.00%
Bootstrap support for E3LR62 as seed ortholog is 100%.
Bootstrap support for L0PBK9 as seed ortholog is 100%.

Group of orthologs #1057. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:35 P.jiroveci:87

E3LUM6              	100.00%		L0PD92              	100.00%
Bootstrap support for E3LUM6 as seed ortholog is 85%.
Bootstrap support for L0PD92 as seed ortholog is 100%.

Group of orthologs #1058. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:87

E3M1U4              	100.00%		L0P852              	100.00%
Bootstrap support for E3M1U4 as seed ortholog is 100%.
Bootstrap support for L0P852 as seed ortholog is 100%.

Group of orthologs #1059. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:87

E3LXN5              	100.00%		L0PCT7              	100.00%
Bootstrap support for E3LXN5 as seed ortholog is 100%.
Bootstrap support for L0PCT7 as seed ortholog is 100%.

Group of orthologs #1060. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:87 P.jiroveci:87

E3M0W6              	100.00%		L0PGS0              	100.00%
Bootstrap support for E3M0W6 as seed ortholog is 100%.
Bootstrap support for L0PGS0 as seed ortholog is 100%.

Group of orthologs #1061. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3LSS5              	100.00%		L0PGZ1              	100.00%
                    	       		L0PGM3              	87.07%
Bootstrap support for E3LSS5 as seed ortholog is 100%.
Bootstrap support for L0PGZ1 as seed ortholog is 100%.

Group of orthologs #1062. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3MQE8              	100.00%		L0PE10              	100.00%
E3NLL1              	7.76%		
Bootstrap support for E3MQE8 as seed ortholog is 100%.
Bootstrap support for L0PE10 as seed ortholog is 100%.

Group of orthologs #1063. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3LFN0              	100.00%		L0PF82              	100.00%
Bootstrap support for E3LFN0 as seed ortholog is 100%.
Bootstrap support for L0PF82 as seed ortholog is 100%.

Group of orthologs #1064. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:1

E3LIN1              	100.00%		L0PGF8              	100.00%
Bootstrap support for E3LIN1 as seed ortholog is 100%.
Bootstrap support for L0PGF8 as seed ortholog is 46%.
Alternative seed ortholog is L0PEF8 (1 bits away from this cluster)

Group of orthologs #1065. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3M3V3              	100.00%		L0PCX6              	100.00%
Bootstrap support for E3M3V3 as seed ortholog is 100%.
Bootstrap support for L0PCX6 as seed ortholog is 100%.

Group of orthologs #1066. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3MI73              	100.00%		L0PE40              	100.00%
Bootstrap support for E3MI73 as seed ortholog is 100%.
Bootstrap support for L0PE40 as seed ortholog is 100%.

Group of orthologs #1067. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:21 P.jiroveci:86

E3MNJ3              	100.00%		L0PD91              	100.00%
Bootstrap support for E3MNJ3 as seed ortholog is 88%.
Bootstrap support for L0PD91 as seed ortholog is 100%.

Group of orthologs #1068. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3MNK3              	100.00%		L0PDQ8              	100.00%
Bootstrap support for E3MNK3 as seed ortholog is 100%.
Bootstrap support for L0PDQ8 as seed ortholog is 100%.

Group of orthologs #1069. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3MMZ8              	100.00%		L0PGR9              	100.00%
Bootstrap support for E3MMZ8 as seed ortholog is 100%.
Bootstrap support for L0PGR9 as seed ortholog is 100%.

Group of orthologs #1070. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:86 P.jiroveci:86

E3MXM1              	100.00%		L0P9F2              	100.00%
Bootstrap support for E3MXM1 as seed ortholog is 100%.
Bootstrap support for L0P9F2 as seed ortholog is 100%.

Group of orthologs #1071. Best score 85 bits
Score difference with first non-orthologous sequence - C.remanei:18 P.jiroveci:85

E3LFE9              	100.00%		L0PB27              	100.00%
Bootstrap support for E3LFE9 as seed ortholog is 79%.
Bootstrap support for L0PB27 as seed ortholog is 100%.

Group of orthologs #1072. Best score 85 bits
Score difference with first non-orthologous sequence - C.remanei:85 P.jiroveci:85

E3LTM2              	100.00%		L0PCF7              	100.00%
Bootstrap support for E3LTM2 as seed ortholog is 100%.
Bootstrap support for L0PCF7 as seed ortholog is 100%.

Group of orthologs #1073. Best score 85 bits
Score difference with first non-orthologous sequence - C.remanei:85 P.jiroveci:85

E3M0L3              	100.00%		L0PFC4              	100.00%
Bootstrap support for E3M0L3 as seed ortholog is 100%.
Bootstrap support for L0PFC4 as seed ortholog is 100%.

Group of orthologs #1074. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:42 P.jiroveci:84

E3N0A2              	100.00%		L0PHH5              	100.00%
E3LY52              	32.04%		
E3ME85              	8.74%		
Bootstrap support for E3N0A2 as seed ortholog is 99%.
Bootstrap support for L0PHH5 as seed ortholog is 100%.

Group of orthologs #1075. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:19 P.jiroveci:84

E3MN08              	100.00%		L0P9W7              	100.00%
E3NM84              	5.84%		
Bootstrap support for E3MN08 as seed ortholog is 78%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #1076. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:84 P.jiroveci:84

E3NX05              	100.00%		L0PBY3              	100.00%
E3NWC1              	8.23%		
Bootstrap support for E3NX05 as seed ortholog is 100%.
Bootstrap support for L0PBY3 as seed ortholog is 100%.

Group of orthologs #1077. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:84 P.jiroveci:84

E3LGU2              	100.00%		L0PG56              	100.00%
Bootstrap support for E3LGU2 as seed ortholog is 100%.
Bootstrap support for L0PG56 as seed ortholog is 100%.

Group of orthologs #1078. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:84

E3LYL5              	100.00%		L0PDG4              	100.00%
Bootstrap support for E3LYL5 as seed ortholog is 79%.
Bootstrap support for L0PDG4 as seed ortholog is 100%.

Group of orthologs #1079. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:21 P.jiroveci:84

E3MA14              	100.00%		L0P9B7              	100.00%
Bootstrap support for E3MA14 as seed ortholog is 85%.
Bootstrap support for L0P9B7 as seed ortholog is 100%.

Group of orthologs #1080. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:7 P.jiroveci:84

E3MHZ3              	100.00%		L0PB53              	100.00%
Bootstrap support for E3MHZ3 as seed ortholog is 56%.
Alternative seed ortholog is E3LZ75 (7 bits away from this cluster)
Bootstrap support for L0PB53 as seed ortholog is 100%.

Group of orthologs #1081. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:84 P.jiroveci:84

E3NBQ7              	100.00%		L0P8G4              	100.00%
Bootstrap support for E3NBQ7 as seed ortholog is 100%.
Bootstrap support for L0P8G4 as seed ortholog is 100%.

Group of orthologs #1082. Best score 83 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:83

E3MRT7              	100.00%		L0PGC0              	100.00%
Bootstrap support for E3MRT7 as seed ortholog is 78%.
Bootstrap support for L0PGC0 as seed ortholog is 100%.

Group of orthologs #1083. Best score 83 bits
Score difference with first non-orthologous sequence - C.remanei:83 P.jiroveci:83

E3N1N0              	100.00%		L0PCB4              	100.00%
Bootstrap support for E3N1N0 as seed ortholog is 100%.
Bootstrap support for L0PCB4 as seed ortholog is 100%.

Group of orthologs #1084. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 P.jiroveci:82

E3LVA8              	100.00%		L0PFF8              	100.00%
Bootstrap support for E3LVA8 as seed ortholog is 100%.
Bootstrap support for L0PFF8 as seed ortholog is 100%.

Group of orthologs #1085. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 P.jiroveci:82

E3MCM0              	100.00%		L0P8R9              	100.00%
Bootstrap support for E3MCM0 as seed ortholog is 100%.
Bootstrap support for L0P8R9 as seed ortholog is 100%.

Group of orthologs #1086. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 P.jiroveci:15

E3MCZ8              	100.00%		L0PFB0              	100.00%
Bootstrap support for E3MCZ8 as seed ortholog is 100%.
Bootstrap support for L0PFB0 as seed ortholog is 62%.
Alternative seed ortholog is L0PGK1 (15 bits away from this cluster)

Group of orthologs #1087. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 P.jiroveci:2

E3MZY7              	100.00%		L0P792              	100.00%
Bootstrap support for E3MZY7 as seed ortholog is 100%.
Bootstrap support for L0P792 as seed ortholog is 50%.
Alternative seed ortholog is L0P933 (2 bits away from this cluster)

Group of orthologs #1088. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 P.jiroveci:82

E3NCI9              	100.00%		L0P887              	100.00%
Bootstrap support for E3NCI9 as seed ortholog is 100%.
Bootstrap support for L0P887 as seed ortholog is 100%.

Group of orthologs #1089. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3MI40              	100.00%		L0PAS9              	100.00%
E3LSW9              	9.55%		
Bootstrap support for E3MI40 as seed ortholog is 100%.
Bootstrap support for L0PAS9 as seed ortholog is 100%.

Group of orthologs #1090. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3MWJ3              	100.00%		L0PHJ8              	100.00%
                    	       		L0P888              	61.49%
Bootstrap support for E3MWJ3 as seed ortholog is 100%.
Bootstrap support for L0PHJ8 as seed ortholog is 100%.

Group of orthologs #1091. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3LNC9              	100.00%		L0PG39              	100.00%
Bootstrap support for E3LNC9 as seed ortholog is 100%.
Bootstrap support for L0PG39 as seed ortholog is 100%.

Group of orthologs #1092. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:34 P.jiroveci:81

E3LXM0              	100.00%		L0PB42              	100.00%
Bootstrap support for E3LXM0 as seed ortholog is 98%.
Bootstrap support for L0PB42 as seed ortholog is 100%.

Group of orthologs #1093. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3M1M6              	100.00%		L0PEF4              	100.00%
Bootstrap support for E3M1M6 as seed ortholog is 100%.
Bootstrap support for L0PEF4 as seed ortholog is 100%.

Group of orthologs #1094. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3MCN9              	100.00%		L0PCR0              	100.00%
Bootstrap support for E3MCN9 as seed ortholog is 100%.
Bootstrap support for L0PCR0 as seed ortholog is 100%.

Group of orthologs #1095. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3MGJ1              	100.00%		L0PB59              	100.00%
Bootstrap support for E3MGJ1 as seed ortholog is 100%.
Bootstrap support for L0PB59 as seed ortholog is 100%.

Group of orthologs #1096. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:81 P.jiroveci:81

E3N076              	100.00%		L0P9B3              	100.00%
Bootstrap support for E3N076 as seed ortholog is 100%.
Bootstrap support for L0P9B3 as seed ortholog is 100%.

Group of orthologs #1097. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:36

E3M5P6              	100.00%		L0P9V4              	100.00%
E3NUB8              	99.17%		
Bootstrap support for E3M5P6 as seed ortholog is 100%.
Bootstrap support for L0P9V4 as seed ortholog is 88%.

Group of orthologs #1098. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:80

E3M4J6              	100.00%		L0PEQ2              	100.00%
                    	       		L0P999              	61.49%
Bootstrap support for E3M4J6 as seed ortholog is 100%.
Bootstrap support for L0PEQ2 as seed ortholog is 100%.

Group of orthologs #1099. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:80

E3MZG2              	100.00%		L0P816              	100.00%
E3M8I1              	24.71%		
Bootstrap support for E3MZG2 as seed ortholog is 100%.
Bootstrap support for L0P816 as seed ortholog is 100%.

Group of orthologs #1100. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:20 P.jiroveci:80

E3LXN6              	100.00%		L0PFM9              	100.00%
Bootstrap support for E3LXN6 as seed ortholog is 84%.
Bootstrap support for L0PFM9 as seed ortholog is 100%.

Group of orthologs #1101. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:80

E3MA73              	100.00%		L0PDY4              	100.00%
Bootstrap support for E3MA73 as seed ortholog is 100%.
Bootstrap support for L0PDY4 as seed ortholog is 100%.

Group of orthologs #1102. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:80

E3N9Y0              	100.00%		L0PFU9              	100.00%
Bootstrap support for E3N9Y0 as seed ortholog is 100%.
Bootstrap support for L0PFU9 as seed ortholog is 100%.

Group of orthologs #1103. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:80

E3NF09              	100.00%		L0PFM0              	100.00%
Bootstrap support for E3NF09 as seed ortholog is 100%.
Bootstrap support for L0PFM0 as seed ortholog is 100%.

Group of orthologs #1104. Best score 80 bits
Score difference with first non-orthologous sequence - C.remanei:80 P.jiroveci:80

E3NGC2              	100.00%		L0PF70              	100.00%
Bootstrap support for E3NGC2 as seed ortholog is 100%.
Bootstrap support for L0PF70 as seed ortholog is 100%.

Group of orthologs #1105. Best score 79 bits
Score difference with first non-orthologous sequence - C.remanei:79 P.jiroveci:79

E3LQD2              	100.00%		L0P883              	100.00%
Bootstrap support for E3LQD2 as seed ortholog is 100%.
Bootstrap support for L0P883 as seed ortholog is 100%.

Group of orthologs #1106. Best score 79 bits
Score difference with first non-orthologous sequence - C.remanei:79 P.jiroveci:32

E3LM67              	100.00%		L0PFT5              	100.00%
Bootstrap support for E3LM67 as seed ortholog is 100%.
Bootstrap support for L0PFT5 as seed ortholog is 88%.

Group of orthologs #1107. Best score 79 bits
Score difference with first non-orthologous sequence - C.remanei:79 P.jiroveci:79

E3MGH1              	100.00%		L0PHP6              	100.00%
Bootstrap support for E3MGH1 as seed ortholog is 100%.
Bootstrap support for L0PHP6 as seed ortholog is 100%.

Group of orthologs #1108. Best score 79 bits
Score difference with first non-orthologous sequence - C.remanei:79 P.jiroveci:15

E3NLL7              	100.00%		L0PD30              	100.00%
Bootstrap support for E3NLL7 as seed ortholog is 100%.
Bootstrap support for L0PD30 as seed ortholog is 70%.
Alternative seed ortholog is L0P9D2 (15 bits away from this cluster)

Group of orthologs #1109. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:78

E3LY65              	100.00%		L0P8Y9              	100.00%
E3MNM8              	27.90%		
E3MNM4              	26.91%		
E3MNM0              	18.52%		
Bootstrap support for E3LY65 as seed ortholog is 100%.
Bootstrap support for L0P8Y9 as seed ortholog is 100%.

Group of orthologs #1110. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:78

E3LU55              	100.00%		L0P8W8              	100.00%
                    	       		L0P9K5              	57.79%
Bootstrap support for E3LU55 as seed ortholog is 100%.
Bootstrap support for L0P8W8 as seed ortholog is 100%.

Group of orthologs #1111. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:78

E3LF16              	100.00%		L0P780              	100.00%
Bootstrap support for E3LF16 as seed ortholog is 100%.
Bootstrap support for L0P780 as seed ortholog is 100%.

Group of orthologs #1112. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:78

E3LFL1              	100.00%		L0PC95              	100.00%
Bootstrap support for E3LFL1 as seed ortholog is 100%.
Bootstrap support for L0PC95 as seed ortholog is 100%.

Group of orthologs #1113. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:78

E3LJP3              	100.00%		L0P9K1              	100.00%
Bootstrap support for E3LJP3 as seed ortholog is 100%.
Bootstrap support for L0P9K1 as seed ortholog is 100%.

Group of orthologs #1114. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:19 P.jiroveci:78

E3MG73              	100.00%		L0PAD3              	100.00%
Bootstrap support for E3MG73 as seed ortholog is 68%.
Alternative seed ortholog is E3NHG7 (19 bits away from this cluster)
Bootstrap support for L0PAD3 as seed ortholog is 100%.

Group of orthologs #1115. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 P.jiroveci:78

E3NC53              	100.00%		L0PEQ9              	100.00%
Bootstrap support for E3NC53 as seed ortholog is 100%.
Bootstrap support for L0PEQ9 as seed ortholog is 100%.

Group of orthologs #1116. Best score 77 bits
Score difference with first non-orthologous sequence - C.remanei:3 P.jiroveci:77

E3NTR0              	100.00%		L0PCS6              	100.00%
E3N3Y9              	95.46%		
Bootstrap support for E3NTR0 as seed ortholog is 49%.
Alternative seed ortholog is E3M399 (3 bits away from this cluster)
Bootstrap support for L0PCS6 as seed ortholog is 100%.

Group of orthologs #1117. Best score 77 bits
Score difference with first non-orthologous sequence - C.remanei:77 P.jiroveci:77

E3LVA3              	100.00%		L0P9T3              	100.00%
Bootstrap support for E3LVA3 as seed ortholog is 100%.
Bootstrap support for L0P9T3 as seed ortholog is 100%.

Group of orthologs #1118. Best score 77 bits
Score difference with first non-orthologous sequence - C.remanei:77 P.jiroveci:77

E3M7E0              	100.00%		L0PFN7              	100.00%
Bootstrap support for E3M7E0 as seed ortholog is 100%.
Bootstrap support for L0PFN7 as seed ortholog is 100%.

Group of orthologs #1119. Best score 77 bits
Score difference with first non-orthologous sequence - C.remanei:77 P.jiroveci:77

E3MDQ3              	100.00%		L0PCV9              	100.00%
Bootstrap support for E3MDQ3 as seed ortholog is 100%.
Bootstrap support for L0PCV9 as seed ortholog is 100%.

Group of orthologs #1120. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3NA94              	100.00%		L0PD60              	100.00%
E3N334              	24.56%		
E3NDY1              	15.19%		
Bootstrap support for E3NA94 as seed ortholog is 100%.
Bootstrap support for L0PD60 as seed ortholog is 100%.

Group of orthologs #1121. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3LS46              	100.00%		L0PCE5              	100.00%
                    	       		L0PBD3              	5.86%
Bootstrap support for E3LS46 as seed ortholog is 100%.
Bootstrap support for L0PCE5 as seed ortholog is 100%.

Group of orthologs #1122. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3ME64              	100.00%		L0PBQ7              	100.00%
E3N1L7              	5.01%		
Bootstrap support for E3ME64 as seed ortholog is 100%.
Bootstrap support for L0PBQ7 as seed ortholog is 100%.

Group of orthologs #1123. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:14 P.jiroveci:76

E3MUL8              	100.00%		L0PBL1              	100.00%
E3MUQ6              	7.26%		
Bootstrap support for E3MUL8 as seed ortholog is 56%.
Alternative seed ortholog is E3LW72 (14 bits away from this cluster)
Bootstrap support for L0PBL1 as seed ortholog is 100%.

Group of orthologs #1124. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:12 P.jiroveci:76

E3N9X4              	100.00%		L0PAV2              	100.00%
E3NLN8              	26.04%		
Bootstrap support for E3N9X4 as seed ortholog is 62%.
Alternative seed ortholog is E3ML08 (12 bits away from this cluster)
Bootstrap support for L0PAV2 as seed ortholog is 100%.

Group of orthologs #1125. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3NBB7              	100.00%		L0PG49              	100.00%
                    	       		L0PEF9              	85.14%
Bootstrap support for E3NBB7 as seed ortholog is 100%.
Bootstrap support for L0PG49 as seed ortholog is 100%.

Group of orthologs #1126. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3LG33              	100.00%		L0PEB3              	100.00%
Bootstrap support for E3LG33 as seed ortholog is 100%.
Bootstrap support for L0PEB3 as seed ortholog is 100%.

Group of orthologs #1127. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:26 P.jiroveci:76

E3LTF2              	100.00%		L0PAT3              	100.00%
Bootstrap support for E3LTF2 as seed ortholog is 98%.
Bootstrap support for L0PAT3 as seed ortholog is 100%.

Group of orthologs #1128. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3M6G1              	100.00%		L0PA90              	100.00%
Bootstrap support for E3M6G1 as seed ortholog is 100%.
Bootstrap support for L0PA90 as seed ortholog is 100%.

Group of orthologs #1129. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3M4R7              	100.00%		L0PEH0              	100.00%
Bootstrap support for E3M4R7 as seed ortholog is 100%.
Bootstrap support for L0PEH0 as seed ortholog is 100%.

Group of orthologs #1130. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3MDQ1              	100.00%		L0P9F8              	100.00%
Bootstrap support for E3MDQ1 as seed ortholog is 100%.
Bootstrap support for L0P9F8 as seed ortholog is 100%.

Group of orthologs #1131. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 P.jiroveci:76

E3NQG0              	100.00%		L0PGG8              	100.00%
Bootstrap support for E3NQG0 as seed ortholog is 100%.
Bootstrap support for L0PGG8 as seed ortholog is 100%.

Group of orthologs #1132. Best score 75 bits
Score difference with first non-orthologous sequence - C.remanei:75 P.jiroveci:75

E3LMQ9              	100.00%		L0PBA3              	100.00%
Bootstrap support for E3LMQ9 as seed ortholog is 100%.
Bootstrap support for L0PBA3 as seed ortholog is 100%.

Group of orthologs #1133. Best score 75 bits
Score difference with first non-orthologous sequence - C.remanei:6 P.jiroveci:75

E3LXZ8              	100.00%		L0PA37              	100.00%
Bootstrap support for E3LXZ8 as seed ortholog is 62%.
Alternative seed ortholog is E3MAL2 (6 bits away from this cluster)
Bootstrap support for L0PA37 as seed ortholog is 100%.

Group of orthologs #1134. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:74

E3LW76              	100.00%		L0PFF4              	100.00%
Bootstrap support for E3LW76 as seed ortholog is 100%.
Bootstrap support for L0PFF4 as seed ortholog is 100%.

Group of orthologs #1135. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:74

E3M804              	100.00%		L0PDX4              	100.00%
Bootstrap support for E3M804 as seed ortholog is 100%.
Bootstrap support for L0PDX4 as seed ortholog is 100%.

Group of orthologs #1136. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:74

E3MHZ8              	100.00%		L0PBZ3              	100.00%
Bootstrap support for E3MHZ8 as seed ortholog is 100%.
Bootstrap support for L0PBZ3 as seed ortholog is 100%.

Group of orthologs #1137. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:74

E3NI46              	100.00%		L0PCF1              	100.00%
Bootstrap support for E3NI46 as seed ortholog is 100%.
Bootstrap support for L0PCF1 as seed ortholog is 100%.

Group of orthologs #1138. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:74 P.jiroveci:10

E3NWM5              	100.00%		L0PFW6              	100.00%
Bootstrap support for E3NWM5 as seed ortholog is 100%.
Bootstrap support for L0PFW6 as seed ortholog is 57%.
Alternative seed ortholog is L0PDU8 (10 bits away from this cluster)

Group of orthologs #1139. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:15 P.jiroveci:23

E3LUU4              	100.00%		L0PFG2              	100.00%
E3LUU3              	51.24%		
E3LUU2              	35.54%		
Bootstrap support for E3LUU4 as seed ortholog is 66%.
Alternative seed ortholog is E3LGX3 (15 bits away from this cluster)
Bootstrap support for L0PFG2 as seed ortholog is 79%.

Group of orthologs #1140. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 P.jiroveci:73

E3LFH6              	100.00%		L0PFV2              	100.00%
Bootstrap support for E3LFH6 as seed ortholog is 100%.
Bootstrap support for L0PFV2 as seed ortholog is 100%.

Group of orthologs #1141. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 P.jiroveci:73

E3LP02              	100.00%		L0PCC2              	100.00%
Bootstrap support for E3LP02 as seed ortholog is 100%.
Bootstrap support for L0PCC2 as seed ortholog is 100%.

Group of orthologs #1142. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 P.jiroveci:73

E3LVW5              	100.00%		L0PFH5              	100.00%
Bootstrap support for E3LVW5 as seed ortholog is 100%.
Bootstrap support for L0PFH5 as seed ortholog is 100%.

Group of orthologs #1143. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 P.jiroveci:73

E3M4U8              	100.00%		L0P9E6              	100.00%
Bootstrap support for E3M4U8 as seed ortholog is 100%.
Bootstrap support for L0P9E6 as seed ortholog is 100%.

Group of orthologs #1144. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 P.jiroveci:73

E3M8Y8              	100.00%		L0PHQ1              	100.00%
Bootstrap support for E3M8Y8 as seed ortholog is 100%.
Bootstrap support for L0PHQ1 as seed ortholog is 100%.

Group of orthologs #1145. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 P.jiroveci:73

E3MI67              	100.00%		L0PFT3              	100.00%
Bootstrap support for E3MI67 as seed ortholog is 100%.
Bootstrap support for L0PFT3 as seed ortholog is 100%.

Group of orthologs #1146. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:72

E3MWD3              	100.00%		L0PFZ1              	100.00%
E3M8E2              	87.43%		
E3N5P1              	72.88%		
Bootstrap support for E3MWD3 as seed ortholog is 100%.
Bootstrap support for L0PFZ1 as seed ortholog is 100%.

Group of orthologs #1147. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:72

E3N5L4              	100.00%		L0PAF5              	100.00%
E3NNQ4              	100.00%		
E3N403              	30.99%		
Bootstrap support for E3N5L4 as seed ortholog is 100%.
Bootstrap support for E3NNQ4 as seed ortholog is 100%.
Bootstrap support for L0PAF5 as seed ortholog is 100%.

Group of orthologs #1148. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:72

E3LUC3              	100.00%		L0PAP8              	100.00%
E3MAW9              	17.08%		
Bootstrap support for E3LUC3 as seed ortholog is 100%.
Bootstrap support for L0PAP8 as seed ortholog is 100%.

Group of orthologs #1149. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:72

E3LSX7              	100.00%		L0PB99              	100.00%
Bootstrap support for E3LSX7 as seed ortholog is 100%.
Bootstrap support for L0PB99 as seed ortholog is 100%.

Group of orthologs #1150. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:1 P.jiroveci:72

E3LY13              	100.00%		L0PBS7              	100.00%
Bootstrap support for E3LY13 as seed ortholog is 91%.
Bootstrap support for L0PBS7 as seed ortholog is 100%.

Group of orthologs #1151. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:72 P.jiroveci:72

E3MWJ1              	100.00%		L0PEX4              	100.00%
Bootstrap support for E3MWJ1 as seed ortholog is 100%.
Bootstrap support for L0PEX4 as seed ortholog is 100%.

Group of orthologs #1152. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3MPK8              	100.00%		L0P9Q9              	100.00%
E3NBM3              	19.20%		
E3M417              	7.51%		
Bootstrap support for E3MPK8 as seed ortholog is 100%.
Bootstrap support for L0P9Q9 as seed ortholog is 100%.

Group of orthologs #1153. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3LMM1              	100.00%		L0PFR7              	100.00%
E3LVD1              	29.30%		
Bootstrap support for E3LMM1 as seed ortholog is 100%.
Bootstrap support for L0PFR7 as seed ortholog is 100%.

Group of orthologs #1154. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3LVS4              	100.00%		L0PA43              	100.00%
E3LVS1              	91.52%		
Bootstrap support for E3LVS4 as seed ortholog is 100%.
Bootstrap support for L0PA43 as seed ortholog is 100%.

Group of orthologs #1155. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:11 P.jiroveci:71

E3LSB2              	100.00%		L0PE14              	100.00%
E3N7W0              	19.32%		
Bootstrap support for E3LSB2 as seed ortholog is 72%.
Alternative seed ortholog is E3MMY4 (11 bits away from this cluster)
Bootstrap support for L0PE14 as seed ortholog is 100%.

Group of orthologs #1156. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3M8A6              	100.00%		L0P831              	100.00%
                    	       		L0PDC1              	42.30%
Bootstrap support for E3M8A6 as seed ortholog is 100%.
Bootstrap support for L0P831 as seed ortholog is 100%.

Group of orthologs #1157. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3NDJ1              	100.00%		L0PEN8              	100.00%
E3MEW1              	12.06%		
Bootstrap support for E3NDJ1 as seed ortholog is 100%.
Bootstrap support for L0PEN8 as seed ortholog is 100%.

Group of orthologs #1158. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:30

E3LLY6              	100.00%		L0P8G8              	100.00%
Bootstrap support for E3LLY6 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 79%.

Group of orthologs #1159. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3LTY6              	100.00%		L0PAZ4              	100.00%
Bootstrap support for E3LTY6 as seed ortholog is 100%.
Bootstrap support for L0PAZ4 as seed ortholog is 100%.

Group of orthologs #1160. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3MQ72              	100.00%		L0PA59              	100.00%
Bootstrap support for E3MQ72 as seed ortholog is 100%.
Bootstrap support for L0PA59 as seed ortholog is 100%.

Group of orthologs #1161. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3MVI2              	100.00%		L0PEK0              	100.00%
Bootstrap support for E3MVI2 as seed ortholog is 100%.
Bootstrap support for L0PEK0 as seed ortholog is 100%.

Group of orthologs #1162. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3MTY6              	100.00%		L0PGN8              	100.00%
Bootstrap support for E3MTY6 as seed ortholog is 100%.
Bootstrap support for L0PGN8 as seed ortholog is 100%.

Group of orthologs #1163. Best score 71 bits
Score difference with first non-orthologous sequence - C.remanei:71 P.jiroveci:71

E3MYH1              	100.00%		L0PGZ4              	100.00%
Bootstrap support for E3MYH1 as seed ortholog is 100%.
Bootstrap support for L0PGZ4 as seed ortholog is 100%.

Group of orthologs #1164. Best score 70 bits
Score difference with first non-orthologous sequence - C.remanei:70 P.jiroveci:70

E3NVD1              	100.00%		L0PD48              	100.00%
E3N9A1              	7.48%		L0PGS1              	6.68%
Bootstrap support for E3NVD1 as seed ortholog is 100%.
Bootstrap support for L0PD48 as seed ortholog is 100%.

Group of orthologs #1165. Best score 70 bits
Score difference with first non-orthologous sequence - C.remanei:70 P.jiroveci:70

E3MDM2              	100.00%		L0P908              	100.00%
                    	       		L0P912              	99.90%
Bootstrap support for E3MDM2 as seed ortholog is 100%.
Bootstrap support for L0P908 as seed ortholog is 100%.

Group of orthologs #1166. Best score 70 bits
Score difference with first non-orthologous sequence - C.remanei:70 P.jiroveci:70

E3LZG5              	100.00%		L0PA74              	100.00%
Bootstrap support for E3LZG5 as seed ortholog is 100%.
Bootstrap support for L0PA74 as seed ortholog is 100%.

Group of orthologs #1167. Best score 70 bits
Score difference with first non-orthologous sequence - C.remanei:70 P.jiroveci:70

E3MHD5              	100.00%		L0PF95              	100.00%
Bootstrap support for E3MHD5 as seed ortholog is 100%.
Bootstrap support for L0PF95 as seed ortholog is 100%.

Group of orthologs #1168. Best score 70 bits
Score difference with first non-orthologous sequence - C.remanei:70 P.jiroveci:70

E3NWK3              	100.00%		L0PDH8              	100.00%
Bootstrap support for E3NWK3 as seed ortholog is 100%.
Bootstrap support for L0PDH8 as seed ortholog is 100%.

Group of orthologs #1169. Best score 69 bits
Score difference with first non-orthologous sequence - C.remanei:69 P.jiroveci:69

E3LTK1              	100.00%		L0PDH3              	100.00%
E3LTK3              	37.52%		
E3NT03              	31.71%		
E3NCZ4              	23.35%		
Bootstrap support for E3LTK1 as seed ortholog is 100%.
Bootstrap support for L0PDH3 as seed ortholog is 100%.

Group of orthologs #1170. Best score 69 bits
Score difference with first non-orthologous sequence - C.remanei:69 P.jiroveci:69

E3M703              	100.00%		L0P7C7              	100.00%
Bootstrap support for E3M703 as seed ortholog is 100%.
Bootstrap support for L0P7C7 as seed ortholog is 100%.

Group of orthologs #1171. Best score 69 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:69

E3MKU4              	100.00%		L0PAD6              	100.00%
Bootstrap support for E3MKU4 as seed ortholog is 76%.
Bootstrap support for L0PAD6 as seed ortholog is 100%.

Group of orthologs #1172. Best score 69 bits
Score difference with first non-orthologous sequence - C.remanei:69 P.jiroveci:69

E3NRR3              	100.00%		L0PE51              	100.00%
Bootstrap support for E3NRR3 as seed ortholog is 100%.
Bootstrap support for L0PE51 as seed ortholog is 100%.

Group of orthologs #1173. Best score 67 bits
Score difference with first non-orthologous sequence - C.remanei:67 P.jiroveci:67

E3LFI2              	100.00%		L0PA11              	100.00%
Bootstrap support for E3LFI2 as seed ortholog is 100%.
Bootstrap support for L0PA11 as seed ortholog is 100%.

Group of orthologs #1174. Best score 67 bits
Score difference with first non-orthologous sequence - C.remanei:67 P.jiroveci:67

E3MT03              	100.00%		L0PCQ4              	100.00%
Bootstrap support for E3MT03 as seed ortholog is 100%.
Bootstrap support for L0PCQ4 as seed ortholog is 100%.

Group of orthologs #1175. Best score 66 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:66

E3MG36              	100.00%		L0P7K1              	100.00%
E3MP23              	100.00%		
E3MG31              	64.63%		
Bootstrap support for E3MG36 as seed ortholog is 100%.
Bootstrap support for E3MP23 as seed ortholog is 100%.
Bootstrap support for L0P7K1 as seed ortholog is 100%.

Group of orthologs #1176. Best score 66 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:66

E3LXN3              	100.00%		L0P8T2              	100.00%
                    	       		L0PA19              	100.00%
Bootstrap support for E3LXN3 as seed ortholog is 100%.
Bootstrap support for L0P8T2 as seed ortholog is 100%.
Bootstrap support for L0PA19 as seed ortholog is 100%.

Group of orthologs #1177. Best score 66 bits
Score difference with first non-orthologous sequence - C.remanei:14 P.jiroveci:66

E3M7H1              	100.00%		L0PBB5              	100.00%
E3NSQ1              	100.00%		
Bootstrap support for E3M7H1 as seed ortholog is 65%.
Alternative seed ortholog is E3LWT7 (14 bits away from this cluster)
Bootstrap support for E3NSQ1 as seed ortholog is 66%.
Alternative seed ortholog is E3LWT7 (14 bits away from this cluster)
Bootstrap support for L0PBB5 as seed ortholog is 100%.

Group of orthologs #1178. Best score 66 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:66

E3LWP1              	100.00%		L0PC69              	100.00%
Bootstrap support for E3LWP1 as seed ortholog is 100%.
Bootstrap support for L0PC69 as seed ortholog is 100%.

Group of orthologs #1179. Best score 66 bits
Score difference with first non-orthologous sequence - C.remanei:66 P.jiroveci:66

E3MFD8              	100.00%		L0PFF1              	100.00%
Bootstrap support for E3MFD8 as seed ortholog is 100%.
Bootstrap support for L0PFF1 as seed ortholog is 100%.

Group of orthologs #1180. Best score 65 bits
Score difference with first non-orthologous sequence - C.remanei:24 P.jiroveci:65

E3MMZ3              	100.00%		L0PBQ5              	100.00%
E3M4C1              	28.62%		
Bootstrap support for E3MMZ3 as seed ortholog is 82%.
Bootstrap support for L0PBQ5 as seed ortholog is 100%.

Group of orthologs #1181. Best score 65 bits
Score difference with first non-orthologous sequence - C.remanei:65 P.jiroveci:65

E3LN56              	100.00%		L0PCR3              	100.00%
Bootstrap support for E3LN56 as seed ortholog is 100%.
Bootstrap support for L0PCR3 as seed ortholog is 100%.

Group of orthologs #1182. Best score 65 bits
Score difference with first non-orthologous sequence - C.remanei:65 P.jiroveci:65

E3LRJ5              	100.00%		L0PB39              	100.00%
Bootstrap support for E3LRJ5 as seed ortholog is 100%.
Bootstrap support for L0PB39 as seed ortholog is 100%.

Group of orthologs #1183. Best score 65 bits
Score difference with first non-orthologous sequence - C.remanei:65 P.jiroveci:65

E3M4A7              	100.00%		L0PDV6              	100.00%
Bootstrap support for E3M4A7 as seed ortholog is 100%.
Bootstrap support for L0PDV6 as seed ortholog is 100%.

Group of orthologs #1184. Best score 65 bits
Score difference with first non-orthologous sequence - C.remanei:65 P.jiroveci:65

E3MIH0              	100.00%		L0PAT8              	100.00%
Bootstrap support for E3MIH0 as seed ortholog is 100%.
Bootstrap support for L0PAT8 as seed ortholog is 100%.

Group of orthologs #1185. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:22 P.jiroveci:64

E3LQI3              	100.00%		L0PB40              	100.00%
E3N2C1              	67.59%		
E3LQI4              	56.63%		
E3LQG7              	53.68%		
E3LQI5              	49.43%		
E3LTJ9              	9.98%		
Bootstrap support for E3LQI3 as seed ortholog is 76%.
Bootstrap support for L0PB40 as seed ortholog is 100%.

Group of orthologs #1186. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3NW72              	100.00%		L0P9S6              	100.00%
E3MST5              	97.31%		
E3LIQ8              	75.70%		
E3M022              	71.48%		
E3MKF4              	18.29%		
Bootstrap support for E3NW72 as seed ortholog is 100%.
Bootstrap support for L0P9S6 as seed ortholog is 100%.

Group of orthologs #1187. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3N294              	100.00%		L0PGG9              	100.00%
E3M0V7              	54.31%		
E3M9S9              	46.64%		
Bootstrap support for E3N294 as seed ortholog is 100%.
Bootstrap support for L0PGG9 as seed ortholog is 100%.

Group of orthologs #1188. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3LRH6              	100.00%		L0PAE2              	100.00%
Bootstrap support for E3LRH6 as seed ortholog is 100%.
Bootstrap support for L0PAE2 as seed ortholog is 100%.

Group of orthologs #1189. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3LXE2              	100.00%		L0PB91              	100.00%
Bootstrap support for E3LXE2 as seed ortholog is 100%.
Bootstrap support for L0PB91 as seed ortholog is 100%.

Group of orthologs #1190. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3LTS9              	100.00%		L0PGS9              	100.00%
Bootstrap support for E3LTS9 as seed ortholog is 100%.
Bootstrap support for L0PGS9 as seed ortholog is 100%.

Group of orthologs #1191. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3MK97              	100.00%		L0PDR4              	100.00%
Bootstrap support for E3MK97 as seed ortholog is 100%.
Bootstrap support for L0PDR4 as seed ortholog is 100%.

Group of orthologs #1192. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3MXV8              	100.00%		L0PEV0              	100.00%
Bootstrap support for E3MXV8 as seed ortholog is 100%.
Bootstrap support for L0PEV0 as seed ortholog is 100%.

Group of orthologs #1193. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3NC96              	100.00%		L0PAS5              	100.00%
Bootstrap support for E3NC96 as seed ortholog is 100%.
Bootstrap support for L0PAS5 as seed ortholog is 100%.

Group of orthologs #1194. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 P.jiroveci:64

E3NGT7              	100.00%		L0PEA3              	100.00%
Bootstrap support for E3NGT7 as seed ortholog is 100%.
Bootstrap support for L0PEA3 as seed ortholog is 100%.

Group of orthologs #1195. Best score 63 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:63

E3N009              	100.00%		L0P9G4              	100.00%
E3MT48              	40.88%		
Bootstrap support for E3N009 as seed ortholog is 100%.
Bootstrap support for L0P9G4 as seed ortholog is 100%.

Group of orthologs #1196. Best score 63 bits
Score difference with first non-orthologous sequence - C.remanei:20 P.jiroveci:17

E3LW23              	100.00%		L0P8Q3              	100.00%
Bootstrap support for E3LW23 as seed ortholog is 83%.
Bootstrap support for L0P8Q3 as seed ortholog is 76%.

Group of orthologs #1197. Best score 63 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:63

E3LUB8              	100.00%		L0PAV0              	100.00%
Bootstrap support for E3LUB8 as seed ortholog is 100%.
Bootstrap support for L0PAV0 as seed ortholog is 100%.

Group of orthologs #1198. Best score 63 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:63

E3LSS7              	100.00%		L0PF93              	100.00%
Bootstrap support for E3LSS7 as seed ortholog is 100%.
Bootstrap support for L0PF93 as seed ortholog is 100%.

Group of orthologs #1199. Best score 63 bits
Score difference with first non-orthologous sequence - C.remanei:63 P.jiroveci:63

E3MHX1              	100.00%		L0PFN8              	100.00%
Bootstrap support for E3MHX1 as seed ortholog is 100%.
Bootstrap support for L0PFN8 as seed ortholog is 100%.

Group of orthologs #1200. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3LQV3              	100.00%		L0PEG8              	100.00%
E3MJT7              	11.43%		
Bootstrap support for E3LQV3 as seed ortholog is 100%.
Bootstrap support for L0PEG8 as seed ortholog is 100%.

Group of orthologs #1201. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:8 P.jiroveci:62

E3MC63              	100.00%		L0PA64              	100.00%
E3M9D1              	54.22%		
Bootstrap support for E3MC63 as seed ortholog is 73%.
Alternative seed ortholog is E3MYI3 (8 bits away from this cluster)
Bootstrap support for L0PA64 as seed ortholog is 100%.

Group of orthologs #1202. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:17 P.jiroveci:62

E3LEJ4              	100.00%		L0P8E1              	100.00%
Bootstrap support for E3LEJ4 as seed ortholog is 75%.
Bootstrap support for L0P8E1 as seed ortholog is 100%.

Group of orthologs #1203. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3LTZ7              	100.00%		L0PE59              	100.00%
Bootstrap support for E3LTZ7 as seed ortholog is 100%.
Bootstrap support for L0PE59 as seed ortholog is 100%.

Group of orthologs #1204. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3LY15              	100.00%		L0PAG3              	100.00%
Bootstrap support for E3LY15 as seed ortholog is 100%.
Bootstrap support for L0PAG3 as seed ortholog is 100%.

Group of orthologs #1205. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3LZG9              	100.00%		L0PFD4              	100.00%
Bootstrap support for E3LZG9 as seed ortholog is 100%.
Bootstrap support for L0PFD4 as seed ortholog is 100%.

Group of orthologs #1206. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3M1A3              	100.00%		L0PGX1              	100.00%
Bootstrap support for E3M1A3 as seed ortholog is 100%.
Bootstrap support for L0PGX1 as seed ortholog is 100%.

Group of orthologs #1207. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3MI50              	100.00%		L0P8B8              	100.00%
Bootstrap support for E3MI50 as seed ortholog is 100%.
Bootstrap support for L0P8B8 as seed ortholog is 100%.

Group of orthologs #1208. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3N1P1              	100.00%		L0PB93              	100.00%
Bootstrap support for E3N1P1 as seed ortholog is 100%.
Bootstrap support for L0PB93 as seed ortholog is 100%.

Group of orthologs #1209. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 P.jiroveci:62

E3NE18              	100.00%		L0PDS8              	100.00%
Bootstrap support for E3NE18 as seed ortholog is 100%.
Bootstrap support for L0PDS8 as seed ortholog is 100%.

Group of orthologs #1210. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:61

E3LRH9              	100.00%		L0PGA2              	100.00%
E3LRI2              	97.83%		
Bootstrap support for E3LRH9 as seed ortholog is 100%.
Bootstrap support for L0PGA2 as seed ortholog is 100%.

Group of orthologs #1211. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:61

E3LPK0              	100.00%		L0PDW6              	100.00%
Bootstrap support for E3LPK0 as seed ortholog is 100%.
Bootstrap support for L0PDW6 as seed ortholog is 100%.

Group of orthologs #1212. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:61

E3LW69              	100.00%		L0PF50              	100.00%
Bootstrap support for E3LW69 as seed ortholog is 100%.
Bootstrap support for L0PF50 as seed ortholog is 100%.

Group of orthologs #1213. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:61

E3MDD8              	100.00%		L0PGI1              	100.00%
Bootstrap support for E3MDD8 as seed ortholog is 100%.
Bootstrap support for L0PGI1 as seed ortholog is 100%.

Group of orthologs #1214. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 P.jiroveci:61

E3N7Q6              	100.00%		L0P9X6              	100.00%
Bootstrap support for E3N7Q6 as seed ortholog is 100%.
Bootstrap support for L0P9X6 as seed ortholog is 100%.

Group of orthologs #1215. Best score 60 bits
Score difference with first non-orthologous sequence - C.remanei:60 P.jiroveci:60

E3MM30              	100.00%		L0PGT2              	100.00%
Bootstrap support for E3MM30 as seed ortholog is 100%.
Bootstrap support for L0PGT2 as seed ortholog is 100%.

Group of orthologs #1216. Best score 59 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:59

E3NF95              	100.00%		L0PG69              	100.00%
E3LTB1              	7.97%		
Bootstrap support for E3NF95 as seed ortholog is 100%.
Bootstrap support for L0PG69 as seed ortholog is 100%.

Group of orthologs #1217. Best score 59 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:59

E3LJ74              	100.00%		L0P949              	100.00%
Bootstrap support for E3LJ74 as seed ortholog is 100%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #1218. Best score 59 bits
Score difference with first non-orthologous sequence - C.remanei:59 P.jiroveci:59

E3LLY0              	100.00%		L0PCB6              	100.00%
Bootstrap support for E3LLY0 as seed ortholog is 100%.
Bootstrap support for L0PCB6 as seed ortholog is 100%.

Group of orthologs #1219. Best score 58 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:58

E3LVX4              	100.00%		L0PCY1              	100.00%
Bootstrap support for E3LVX4 as seed ortholog is 100%.
Bootstrap support for L0PCY1 as seed ortholog is 100%.

Group of orthologs #1220. Best score 58 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:58

E3MIC6              	100.00%		L0PBS8              	100.00%
Bootstrap support for E3MIC6 as seed ortholog is 100%.
Bootstrap support for L0PBS8 as seed ortholog is 100%.

Group of orthologs #1221. Best score 58 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:58

E3MY59              	100.00%		L0PBG3              	100.00%
Bootstrap support for E3MY59 as seed ortholog is 100%.
Bootstrap support for L0PBG3 as seed ortholog is 100%.

Group of orthologs #1222. Best score 58 bits
Score difference with first non-orthologous sequence - C.remanei:58 P.jiroveci:58

E3MZT5              	100.00%		L0PBR0              	100.00%
Bootstrap support for E3MZT5 as seed ortholog is 100%.
Bootstrap support for L0PBR0 as seed ortholog is 100%.

Group of orthologs #1223. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3MJ59              	100.00%		L0P7W8              	100.00%
E3MY69              	100.00%		L0P8R2              	100.00%
E3MIY3              	90.15%		
E3MJ62              	43.38%		
E3LEL1              	25.23%		
E3LZD0              	11.69%		
Bootstrap support for E3MJ59 as seed ortholog is 100%.
Bootstrap support for E3MY69 as seed ortholog is 100%.
Bootstrap support for L0P7W8 as seed ortholog is 100%.
Bootstrap support for L0P8R2 as seed ortholog is 100%.

Group of orthologs #1224. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:13 P.jiroveci:57

E3M682              	100.00%		L0PDY5              	100.00%
E3NSQ8              	86.94%		
Bootstrap support for E3M682 as seed ortholog is 72%.
Alternative seed ortholog is E3LF08 (13 bits away from this cluster)
Bootstrap support for L0PDY5 as seed ortholog is 100%.

Group of orthologs #1225. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3M7U2              	100.00%		L0PE66              	100.00%
E3NTJ0              	100.00%		
Bootstrap support for E3M7U2 as seed ortholog is 100%.
Bootstrap support for E3NTJ0 as seed ortholog is 100%.
Bootstrap support for L0PE66 as seed ortholog is 100%.

Group of orthologs #1226. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3LFJ6              	100.00%		L0PAA2              	100.00%
Bootstrap support for E3LFJ6 as seed ortholog is 100%.
Bootstrap support for L0PAA2 as seed ortholog is 100%.

Group of orthologs #1227. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3LRV7              	100.00%		L0PCJ4              	100.00%
Bootstrap support for E3LRV7 as seed ortholog is 100%.
Bootstrap support for L0PCJ4 as seed ortholog is 100%.

Group of orthologs #1228. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3LTM4              	100.00%		L0PAT2              	100.00%
Bootstrap support for E3LTM4 as seed ortholog is 100%.
Bootstrap support for L0PAT2 as seed ortholog is 100%.

Group of orthologs #1229. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3N9R8              	100.00%		L0P813              	100.00%
Bootstrap support for E3N9R8 as seed ortholog is 100%.
Bootstrap support for L0P813 as seed ortholog is 100%.

Group of orthologs #1230. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3NRE3              	100.00%		L0P9H6              	100.00%
Bootstrap support for E3NRE3 as seed ortholog is 100%.
Bootstrap support for L0P9H6 as seed ortholog is 100%.

Group of orthologs #1231. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3NLQ4              	100.00%		L0PGA3              	100.00%
Bootstrap support for E3NLQ4 as seed ortholog is 100%.
Bootstrap support for L0PGA3 as seed ortholog is 100%.

Group of orthologs #1232. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 P.jiroveci:57

E3NST6              	100.00%		L0PD80              	100.00%
Bootstrap support for E3NST6 as seed ortholog is 100%.
Bootstrap support for L0PD80 as seed ortholog is 100%.

Group of orthologs #1233. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:6 P.jiroveci:13

E3LQG4              	100.00%		L0P982              	100.00%
E3M0D5              	48.39%		
E3MQ70              	29.84%		
E3LLV8              	29.44%		
E3LN81              	29.23%		
E3MM28              	28.43%		
E3NIG8              	28.23%		
E3MM04              	24.40%		
E3MQ71              	20.77%		
E3MYA0              	16.94%		
E3NL39              	10.48%		
Bootstrap support for E3LQG4 as seed ortholog is 57%.
Alternative seed ortholog is E3LLH6 (6 bits away from this cluster)
Bootstrap support for L0P982 as seed ortholog is 64%.
Alternative seed ortholog is L0P8G6 (13 bits away from this cluster)

Group of orthologs #1234. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3M401              	100.00%		L0PC31              	100.00%
E3MRN6              	36.97%		L0PGG5              	100.00%
Bootstrap support for E3M401 as seed ortholog is 100%.
Bootstrap support for L0PC31 as seed ortholog is 100%.
Bootstrap support for L0PGG5 as seed ortholog is 100%.

Group of orthologs #1235. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3LGV1              	100.00%		L0PCL8              	100.00%
Bootstrap support for E3LGV1 as seed ortholog is 100%.
Bootstrap support for L0PCL8 as seed ortholog is 100%.

Group of orthologs #1236. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3LRV5              	100.00%		L0PAF6              	100.00%
Bootstrap support for E3LRV5 as seed ortholog is 100%.
Bootstrap support for L0PAF6 as seed ortholog is 100%.

Group of orthologs #1237. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3LT61              	100.00%		L0PG94              	100.00%
Bootstrap support for E3LT61 as seed ortholog is 100%.
Bootstrap support for L0PG94 as seed ortholog is 100%.

Group of orthologs #1238. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3LVJ9              	100.00%		L0PE38              	100.00%
Bootstrap support for E3LVJ9 as seed ortholog is 100%.
Bootstrap support for L0PE38 as seed ortholog is 100%.

Group of orthologs #1239. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3MHZ5              	100.00%		L0PF85              	100.00%
Bootstrap support for E3MHZ5 as seed ortholog is 100%.
Bootstrap support for L0PF85 as seed ortholog is 100%.

Group of orthologs #1240. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3MR62              	100.00%		L0P9R4              	100.00%
Bootstrap support for E3MR62 as seed ortholog is 100%.
Bootstrap support for L0P9R4 as seed ortholog is 100%.

Group of orthologs #1241. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3N4T1              	100.00%		L0PDB5              	100.00%
Bootstrap support for E3N4T1 as seed ortholog is 100%.
Bootstrap support for L0PDB5 as seed ortholog is 100%.

Group of orthologs #1242. Best score 56 bits
Score difference with first non-orthologous sequence - C.remanei:56 P.jiroveci:56

E3NJ90              	100.00%		L0PG35              	100.00%
Bootstrap support for E3NJ90 as seed ortholog is 100%.
Bootstrap support for L0PG35 as seed ortholog is 100%.

Group of orthologs #1243. Best score 55 bits
Score difference with first non-orthologous sequence - C.remanei:55 P.jiroveci:55

E3LCK1              	100.00%		L0PAE0              	100.00%
E3NCS6              	60.28%		
E3LCK2              	30.05%		
E3LCK0              	17.44%		
E3LCJ9              	13.47%		
E3LCK3              	12.44%		
Bootstrap support for E3LCK1 as seed ortholog is 100%.
Bootstrap support for L0PAE0 as seed ortholog is 100%.

Group of orthologs #1244. Best score 55 bits
Score difference with first non-orthologous sequence - C.remanei:55 P.jiroveci:55

E3NFR4              	100.00%		L0PDF6              	100.00%
E3NTA4              	100.00%		
E3N8D9              	22.94%		
E3MLP2              	22.75%		
E3NFU2              	15.41%		
Bootstrap support for E3NFR4 as seed ortholog is 100%.
Bootstrap support for E3NTA4 as seed ortholog is 100%.
Bootstrap support for L0PDF6 as seed ortholog is 100%.

Group of orthologs #1245. Best score 55 bits
Score difference with first non-orthologous sequence - C.remanei:55 P.jiroveci:55

E3LF76              	100.00%		L0PI42              	100.00%
Bootstrap support for E3LF76 as seed ortholog is 100%.
Bootstrap support for L0PI42 as seed ortholog is 100%.

Group of orthologs #1246. Best score 55 bits
Score difference with first non-orthologous sequence - C.remanei:55 P.jiroveci:55

E3LRB0              	100.00%		L0PEE9              	100.00%
Bootstrap support for E3LRB0 as seed ortholog is 100%.
Bootstrap support for L0PEE9 as seed ortholog is 100%.

Group of orthologs #1247. Best score 55 bits
Score difference with first non-orthologous sequence - C.remanei:55 P.jiroveci:55

E3MMT3              	100.00%		L0PAT1              	100.00%
Bootstrap support for E3MMT3 as seed ortholog is 100%.
Bootstrap support for L0PAT1 as seed ortholog is 100%.

Group of orthologs #1248. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 P.jiroveci:54

E3LTC1              	100.00%		L0P9L4              	100.00%
Bootstrap support for E3LTC1 as seed ortholog is 100%.
Bootstrap support for L0P9L4 as seed ortholog is 100%.

Group of orthologs #1249. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 P.jiroveci:54

E3MFR1              	100.00%		L0PAR6              	100.00%
Bootstrap support for E3MFR1 as seed ortholog is 100%.
Bootstrap support for L0PAR6 as seed ortholog is 100%.

Group of orthologs #1250. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 P.jiroveci:54

E3MNN2              	100.00%		L0PBC9              	100.00%
Bootstrap support for E3MNN2 as seed ortholog is 100%.
Bootstrap support for L0PBC9 as seed ortholog is 100%.

Group of orthologs #1251. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 P.jiroveci:54

E3NMZ7              	100.00%		L0P8F9              	100.00%
Bootstrap support for E3NMZ7 as seed ortholog is 100%.
Bootstrap support for L0P8F9 as seed ortholog is 100%.

Group of orthologs #1252. Best score 53 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:53

E3NNG3              	100.00%		L0P988              	100.00%
E3M6L6              	98.60%		
Bootstrap support for E3NNG3 as seed ortholog is 100%.
Bootstrap support for L0P988 as seed ortholog is 100%.

Group of orthologs #1253. Best score 53 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:53

E3LQ17              	100.00%		L0P9K3              	100.00%
Bootstrap support for E3LQ17 as seed ortholog is 100%.
Bootstrap support for L0P9K3 as seed ortholog is 100%.

Group of orthologs #1254. Best score 53 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:53

E3LYR2              	100.00%		L0PFF2              	100.00%
Bootstrap support for E3LYR2 as seed ortholog is 100%.
Bootstrap support for L0PFF2 as seed ortholog is 100%.

Group of orthologs #1255. Best score 53 bits
Score difference with first non-orthologous sequence - C.remanei:53 P.jiroveci:53

E3M6S6              	100.00%		L0PDC5              	100.00%
Bootstrap support for E3M6S6 as seed ortholog is 100%.
Bootstrap support for L0PDC5 as seed ortholog is 100%.

Group of orthologs #1256. Best score 52 bits
Score difference with first non-orthologous sequence - C.remanei:52 P.jiroveci:52

E3LEE7              	100.00%		L0PHJ4              	100.00%
Bootstrap support for E3LEE7 as seed ortholog is 100%.
Bootstrap support for L0PHJ4 as seed ortholog is 100%.

Group of orthologs #1257. Best score 52 bits
Score difference with first non-orthologous sequence - C.remanei:52 P.jiroveci:52

E3LRU8              	100.00%		L0PBA0              	100.00%
Bootstrap support for E3LRU8 as seed ortholog is 100%.
Bootstrap support for L0PBA0 as seed ortholog is 100%.

Group of orthologs #1258. Best score 51 bits
Score difference with first non-orthologous sequence - C.remanei:51 P.jiroveci:51

E3NMH0              	100.00%		L0PBK6              	100.00%
E3N0I1              	34.30%		
E3NKR1              	32.44%		
E3MD49              	30.99%		
E3MMY1              	26.65%		
E3MZW2              	11.36%		
Bootstrap support for E3NMH0 as seed ortholog is 100%.
Bootstrap support for L0PBK6 as seed ortholog is 100%.

Group of orthologs #1259. Best score 51 bits
Score difference with first non-orthologous sequence - C.remanei:51 P.jiroveci:51

E3LMC9              	100.00%		L0PBA7              	100.00%
Bootstrap support for E3LMC9 as seed ortholog is 100%.
Bootstrap support for L0PBA7 as seed ortholog is 100%.

Group of orthologs #1260. Best score 51 bits
Score difference with first non-orthologous sequence - C.remanei:51 P.jiroveci:51

E3LZC6              	100.00%		L0PFV9              	100.00%
Bootstrap support for E3LZC6 as seed ortholog is 100%.
Bootstrap support for L0PFV9 as seed ortholog is 100%.

Group of orthologs #1261. Best score 51 bits
Score difference with first non-orthologous sequence - C.remanei:51 P.jiroveci:51

E3NTS0              	100.00%		L0PCH1              	100.00%
Bootstrap support for E3NTS0 as seed ortholog is 100%.
Bootstrap support for L0PCH1 as seed ortholog is 100%.

Group of orthologs #1262. Best score 50 bits
Score difference with first non-orthologous sequence - C.remanei:50 P.jiroveci:50

E3MG65              	100.00%		L0PE69              	100.00%
Bootstrap support for E3MG65 as seed ortholog is 100%.
Bootstrap support for L0PE69 as seed ortholog is 100%.

Group of orthologs #1263. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:49

E3LFG4              	100.00%		L0P8R3              	100.00%
                    	       		L0PB56              	100.00%
Bootstrap support for E3LFG4 as seed ortholog is 100%.
Bootstrap support for L0P8R3 as seed ortholog is 100%.
Bootstrap support for L0PB56 as seed ortholog is 100%.

Group of orthologs #1264. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:49

E3LEX5              	100.00%		L0PEB6              	100.00%
E3NRP9              	11.75%		
Bootstrap support for E3LEX5 as seed ortholog is 100%.
Bootstrap support for L0PEB6 as seed ortholog is 100%.

Group of orthologs #1265. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:49

E3LRS6              	100.00%		L0PHU9              	100.00%
Bootstrap support for E3LRS6 as seed ortholog is 100%.
Bootstrap support for L0PHU9 as seed ortholog is 100%.

Group of orthologs #1266. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:49

E3LYJ6              	100.00%		L0PCI6              	100.00%
Bootstrap support for E3LYJ6 as seed ortholog is 100%.
Bootstrap support for L0PCI6 as seed ortholog is 100%.

Group of orthologs #1267. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 P.jiroveci:49

E3M8F3              	100.00%		L0PFG8              	100.00%
Bootstrap support for E3M8F3 as seed ortholog is 100%.
Bootstrap support for L0PFG8 as seed ortholog is 100%.

Group of orthologs #1268. Best score 48 bits
Score difference with first non-orthologous sequence - C.remanei:48 P.jiroveci:48

E3MM16              	100.00%		L0P977              	100.00%
                    	       		L0P981              	100.00%
Bootstrap support for E3MM16 as seed ortholog is 100%.
Bootstrap support for L0P977 as seed ortholog is 100%.
Bootstrap support for L0P981 as seed ortholog is 100%.

Group of orthologs #1269. Best score 48 bits
Score difference with first non-orthologous sequence - C.remanei:48 P.jiroveci:48

E3NC54              	100.00%		L0P8D1              	100.00%
E3NSA1              	95.90%		
Bootstrap support for E3NC54 as seed ortholog is 100%.
Bootstrap support for L0P8D1 as seed ortholog is 100%.

Group of orthologs #1270. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:47

E3NPA8              	100.00%		L0PG62              	100.00%
E3NP16              	16.58%		
Bootstrap support for E3NPA8 as seed ortholog is 100%.
Bootstrap support for L0PG62 as seed ortholog is 100%.

Group of orthologs #1271. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:1 P.jiroveci:0

E3LNB4              	100.00%		L0PCA9              	100.00%
Bootstrap support for E3LNB4 as seed ortholog is 48%.
Alternative seed ortholog is E3M4K6 (1 bits away from this cluster)
Bootstrap support for L0PCA9 as seed ortholog is 49%.
Alternative seed ortholog is L0P9B0 (0 bits away from this cluster)

Group of orthologs #1272. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:47

E3LXM1              	100.00%		L0PFQ7              	100.00%
Bootstrap support for E3LXM1 as seed ortholog is 100%.
Bootstrap support for L0PFQ7 as seed ortholog is 100%.

Group of orthologs #1273. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:47

E3M4M9              	100.00%		L0PCN6              	100.00%
Bootstrap support for E3M4M9 as seed ortholog is 100%.
Bootstrap support for L0PCN6 as seed ortholog is 100%.

Group of orthologs #1274. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:47

E3MN33              	100.00%		L0P937              	100.00%
Bootstrap support for E3MN33 as seed ortholog is 100%.
Bootstrap support for L0P937 as seed ortholog is 100%.

Group of orthologs #1275. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:47 P.jiroveci:47

E3MZI2              	100.00%		L0PC72              	100.00%
Bootstrap support for E3MZI2 as seed ortholog is 100%.
Bootstrap support for L0PC72 as seed ortholog is 100%.

Group of orthologs #1276. Best score 46 bits
Score difference with first non-orthologous sequence - C.remanei:46 P.jiroveci:46

E3N565              	100.00%		L0PAD5              	100.00%
E3NAH1              	100.00%		
E3NVU6              	70.07%		
Bootstrap support for E3N565 as seed ortholog is 100%.
Bootstrap support for E3NAH1 as seed ortholog is 100%.
Bootstrap support for L0PAD5 as seed ortholog is 100%.

Group of orthologs #1277. Best score 46 bits
Score difference with first non-orthologous sequence - C.remanei:46 P.jiroveci:46

E3LW71              	100.00%		L0P9J5              	100.00%
Bootstrap support for E3LW71 as seed ortholog is 100%.
Bootstrap support for L0P9J5 as seed ortholog is 100%.

Group of orthologs #1278. Best score 46 bits
Score difference with first non-orthologous sequence - C.remanei:46 P.jiroveci:46

E3MXA2              	100.00%		L0PFU0              	100.00%
Bootstrap support for E3MXA2 as seed ortholog is 100%.
Bootstrap support for L0PFU0 as seed ortholog is 100%.

Group of orthologs #1279. Best score 46 bits
Score difference with first non-orthologous sequence - C.remanei:46 P.jiroveci:46

E3NBV5              	100.00%		L0P737              	100.00%
Bootstrap support for E3NBV5 as seed ortholog is 100%.
Bootstrap support for L0P737 as seed ortholog is 100%.

Group of orthologs #1280. Best score 46 bits
Score difference with first non-orthologous sequence - C.remanei:46 P.jiroveci:46

E3NAV7              	100.00%		L0PFL2              	100.00%
Bootstrap support for E3NAV7 as seed ortholog is 100%.
Bootstrap support for L0PFL2 as seed ortholog is 100%.

Group of orthologs #1281. Best score 46 bits
Score difference with first non-orthologous sequence - C.remanei:46 P.jiroveci:46

E3NLG6              	100.00%		L0PDM1              	100.00%
Bootstrap support for E3NLG6 as seed ortholog is 100%.
Bootstrap support for L0PDM1 as seed ortholog is 100%.

Group of orthologs #1282. Best score 45 bits
Score difference with first non-orthologous sequence - C.remanei:45 P.jiroveci:45

E3LTT3              	100.00%		L0PFE5              	100.00%
Bootstrap support for E3LTT3 as seed ortholog is 100%.
Bootstrap support for L0PFE5 as seed ortholog is 100%.

Group of orthologs #1283. Best score 45 bits
Score difference with first non-orthologous sequence - C.remanei:45 P.jiroveci:45

E3MRD7              	100.00%		L0PFI4              	100.00%
Bootstrap support for E3MRD7 as seed ortholog is 100%.
Bootstrap support for L0PFI4 as seed ortholog is 100%.

Group of orthologs #1284. Best score 44 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:44

E3M7T8              	100.00%		L0PDV8              	100.00%
E3M7T6              	98.97%		
E3LEX0              	63.46%		
Bootstrap support for E3M7T8 as seed ortholog is 100%.
Bootstrap support for L0PDV8 as seed ortholog is 100%.

Group of orthologs #1285. Best score 44 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:44

E3MCR6              	100.00%		L0PF55              	100.00%
E3MKT9              	6.35%		
E3MFT0              	5.36%		
Bootstrap support for E3MCR6 as seed ortholog is 100%.
Bootstrap support for L0PF55 as seed ortholog is 100%.

Group of orthologs #1286. Best score 44 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:44

E3LWX0              	100.00%		L0PAV7              	100.00%
                    	       		L0PBJ9              	100.00%
Bootstrap support for E3LWX0 as seed ortholog is 100%.
Bootstrap support for L0PAV7 as seed ortholog is 100%.
Bootstrap support for L0PBJ9 as seed ortholog is 100%.

Group of orthologs #1287. Best score 44 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:44

E3LUW1              	100.00%		L0PDH6              	100.00%
Bootstrap support for E3LUW1 as seed ortholog is 100%.
Bootstrap support for L0PDH6 as seed ortholog is 100%.

Group of orthologs #1288. Best score 44 bits
Score difference with first non-orthologous sequence - C.remanei:44 P.jiroveci:44

E3M333              	100.00%		L0P7U7              	100.00%
Bootstrap support for E3M333 as seed ortholog is 100%.
Bootstrap support for L0P7U7 as seed ortholog is 100%.

Group of orthologs #1289. Best score 43 bits
Score difference with first non-orthologous sequence - C.remanei:43 P.jiroveci:43

E3LMW7              	100.00%		L0P6T2              	100.00%
Bootstrap support for E3LMW7 as seed ortholog is 100%.
Bootstrap support for L0P6T2 as seed ortholog is 100%.

Group of orthologs #1290. Best score 43 bits
Score difference with first non-orthologous sequence - C.remanei:2 P.jiroveci:43

E3LYK2              	100.00%		L0P881              	100.00%
Bootstrap support for E3LYK2 as seed ortholog is 55%.
Alternative seed ortholog is E3MFA4 (2 bits away from this cluster)
Bootstrap support for L0P881 as seed ortholog is 100%.

Group of orthologs #1291. Best score 43 bits
Score difference with first non-orthologous sequence - C.remanei:43 P.jiroveci:43

E3MNL5              	100.00%		L0P8V4              	100.00%
Bootstrap support for E3MNL5 as seed ortholog is 100%.
Bootstrap support for L0P8V4 as seed ortholog is 100%.

Group of orthologs #1292. Best score 43 bits
Score difference with first non-orthologous sequence - C.remanei:43 P.jiroveci:43

E3N5U9              	100.00%		L0PAQ5              	100.00%
Bootstrap support for E3N5U9 as seed ortholog is 100%.
Bootstrap support for L0PAQ5 as seed ortholog is 100%.

Group of orthologs #1293. Best score 42 bits
Score difference with first non-orthologous sequence - C.remanei:42 P.jiroveci:42

E3LNA8              	100.00%		L0PFT1              	100.00%
E3LNB5              	72.52%		
E3NHR1              	8.40%		
E3NHR0              	6.87%		
E3NRB8              	6.87%		
Bootstrap support for E3LNA8 as seed ortholog is 100%.
Bootstrap support for L0PFT1 as seed ortholog is 100%.

Group of orthologs #1294. Best score 42 bits
Score difference with first non-orthologous sequence - C.remanei:42 P.jiroveci:42

E3NRH2              	100.00%		L0P9N3              	100.00%
E3MRK7              	14.60%		
Bootstrap support for E3NRH2 as seed ortholog is 100%.
Bootstrap support for L0P9N3 as seed ortholog is 100%.

Group of orthologs #1295. Best score 41 bits
Score difference with first non-orthologous sequence - C.remanei:41 P.jiroveci:41

E3MR20              	100.00%		L0PCT2              	100.00%
E3MR21              	8.43%		
Bootstrap support for E3MR20 as seed ortholog is 100%.
Bootstrap support for L0PCT2 as seed ortholog is 100%.

Group of orthologs #1296. Best score 41 bits
Score difference with first non-orthologous sequence - C.remanei:41 P.jiroveci:41

E3MY67              	100.00%		L0PAW3              	100.00%
E3LFN8              	96.98%		
Bootstrap support for E3MY67 as seed ortholog is 100%.
Bootstrap support for L0PAW3 as seed ortholog is 100%.

Group of orthologs #1297. Best score 41 bits
Score difference with first non-orthologous sequence - C.remanei:41 P.jiroveci:41

E3N7R6              	100.00%		L0PGE4              	100.00%
Bootstrap support for E3N7R6 as seed ortholog is 100%.
Bootstrap support for L0PGE4 as seed ortholog is 100%.

Group of orthologs #1298. Best score 40 bits
Score difference with first non-orthologous sequence - C.remanei:40 P.jiroveci:40

E3LPB9              	100.00%		L0PA84              	100.00%
E3MY12              	39.75%		L0PGH1              	74.10%
Bootstrap support for E3LPB9 as seed ortholog is 100%.
Bootstrap support for L0PA84 as seed ortholog is 100%.

Group of orthologs #1299. Best score 40 bits
Score difference with first non-orthologous sequence - C.remanei:40 P.jiroveci:40

E3MZK4              	100.00%		L0P8K9              	100.00%
Bootstrap support for E3MZK4 as seed ortholog is 100%.
Bootstrap support for L0P8K9 as seed ortholog is 100%.