###################################
200 groups of orthologs
366 in-paralogs from C.remanei
205 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 882 bits
Score difference with first non-orthologous sequence - C.remanei:645 C.trachomatis:882

E3M5G5              	100.00%		O84022              	100.00%
Bootstrap support for E3M5G5 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 869 bits
Score difference with first non-orthologous sequence - C.remanei:869 C.trachomatis:869

E3LHJ0              	100.00%		O84250              	100.00%
Bootstrap support for E3LHJ0 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 703 bits
Score difference with first non-orthologous sequence - C.remanei:49 C.trachomatis:657

E3LK16              	100.00%		P17821              	100.00%
Bootstrap support for E3LK16 as seed ortholog is 85%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #4. Best score 692 bits
Score difference with first non-orthologous sequence - C.remanei:692 C.trachomatis:436

E3NW16              	100.00%		O84193              	100.00%
Bootstrap support for E3NW16 as seed ortholog is 100%.
Bootstrap support for O84193 as seed ortholog is 100%.

Group of orthologs #5. Best score 644 bits
Score difference with first non-orthologous sequence - C.remanei:644 C.trachomatis:644

E3LMQ8              	100.00%		O84348              	100.00%
Bootstrap support for E3LMQ8 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #6. Best score 625 bits
Score difference with first non-orthologous sequence - C.remanei:173 C.trachomatis:625

E3NV82              	100.00%		O84549              	100.00%
Bootstrap support for E3NV82 as seed ortholog is 99%.
Bootstrap support for O84549 as seed ortholog is 100%.

Group of orthologs #7. Best score 569 bits
Score difference with first non-orthologous sequence - C.remanei:49 C.trachomatis:569

E3N7Q2              	100.00%		O84716              	100.00%
E3MSQ2              	55.19%		
Bootstrap support for E3N7Q2 as seed ortholog is 85%.
Bootstrap support for O84716 as seed ortholog is 100%.

Group of orthologs #8. Best score 526 bits
Score difference with first non-orthologous sequence - C.remanei:450 C.trachomatis:350

E3MNJ4              	100.00%		P0C0Z7              	100.00%
Bootstrap support for E3MNJ4 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #9. Best score 520 bits
Score difference with first non-orthologous sequence - C.remanei:147 C.trachomatis:520

E3M8W9              	100.00%		O84304              	100.00%
Bootstrap support for E3M8W9 as seed ortholog is 98%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #10. Best score 512 bits
Score difference with first non-orthologous sequence - C.remanei:512 C.trachomatis:512

E3M641              	100.00%		O84057              	100.00%
E3LQ22              	5.14%		
Bootstrap support for E3M641 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #11. Best score 502 bits
Score difference with first non-orthologous sequence - C.remanei:163 C.trachomatis:502

E3LF07              	100.00%		O84444              	100.00%
Bootstrap support for E3LF07 as seed ortholog is 99%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #12. Best score 485 bits
Score difference with first non-orthologous sequence - C.remanei:302 C.trachomatis:485

E3MWG9              	100.00%		O84863              	100.00%
Bootstrap support for E3MWG9 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #13. Best score 484 bits
Score difference with first non-orthologous sequence - C.remanei:484 C.trachomatis:484

E3NWZ0              	100.00%		O84115              	100.00%
                    	       		O84288              	7.33%
Bootstrap support for E3NWZ0 as seed ortholog is 100%.
Bootstrap support for O84115 as seed ortholog is 100%.

Group of orthologs #14. Best score 483 bits
Score difference with first non-orthologous sequence - C.remanei:483 C.trachomatis:483

E3LFX3              	100.00%		O84585              	100.00%
Bootstrap support for E3LFX3 as seed ortholog is 100%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #15. Best score 476 bits
Score difference with first non-orthologous sequence - C.remanei:476 C.trachomatis:476

E3LSK7              	100.00%		O84834              	100.00%
Bootstrap support for E3LSK7 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #16. Best score 467 bits
Score difference with first non-orthologous sequence - C.remanei:467 C.trachomatis:467

E3M577              	100.00%		O84066              	100.00%
Bootstrap support for E3M577 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #17. Best score 455 bits
Score difference with first non-orthologous sequence - C.remanei:455 C.trachomatis:455

E3MGG7              	100.00%		O84754              	100.00%
Bootstrap support for E3MGG7 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #18. Best score 438 bits
Score difference with first non-orthologous sequence - C.remanei:315 C.trachomatis:438

E3MI21              	100.00%		O84067              	100.00%
Bootstrap support for E3MI21 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #19. Best score 431 bits
Score difference with first non-orthologous sequence - C.remanei:431 C.trachomatis:431

E3LH00              	100.00%		P0CD73              	100.00%
Bootstrap support for E3LH00 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #20. Best score 427 bits
Score difference with first non-orthologous sequence - C.remanei:427 C.trachomatis:427

E3LM11              	100.00%		O84848              	100.00%
Bootstrap support for E3LM11 as seed ortholog is 100%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #21. Best score 420 bits
Score difference with first non-orthologous sequence - C.remanei:124 C.trachomatis:420

E3NWN3              	100.00%		O84711              	100.00%
Bootstrap support for E3NWN3 as seed ortholog is 99%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #22. Best score 412 bits
Score difference with first non-orthologous sequence - C.remanei:265 C.trachomatis:412

E3LCL8              	100.00%		O84126              	100.00%
E3NPY7              	7.45%		
E3MLX9              	7.06%		
Bootstrap support for E3LCL8 as seed ortholog is 100%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #23. Best score 396 bits
Score difference with first non-orthologous sequence - C.remanei:350 C.trachomatis:396

E3NX21              	100.00%		O84172              	100.00%
Bootstrap support for E3NX21 as seed ortholog is 100%.
Bootstrap support for O84172 as seed ortholog is 100%.

Group of orthologs #24. Best score 388 bits
Score difference with first non-orthologous sequence - C.remanei:71 C.trachomatis:388

E3LWK0              	100.00%		P0CD71              	100.00%
Bootstrap support for E3LWK0 as seed ortholog is 96%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #25. Best score 387 bits
Score difference with first non-orthologous sequence - C.remanei:240 C.trachomatis:387

E3MCM1              	100.00%		O84460              	100.00%
Bootstrap support for E3MCM1 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #26. Best score 385 bits
Score difference with first non-orthologous sequence - C.remanei:385 C.trachomatis:385

E3LTL3              	100.00%		O84310              	100.00%
Bootstrap support for E3LTL3 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #27. Best score 374 bits
Score difference with first non-orthologous sequence - C.remanei:374 C.trachomatis:245

E3NU81              	100.00%		O84614              	100.00%
Bootstrap support for E3NU81 as seed ortholog is 100%.
Bootstrap support for O84614 as seed ortholog is 100%.

Group of orthologs #28. Best score 362 bits
Score difference with first non-orthologous sequence - C.remanei:362 C.trachomatis:362

E3NVL0              	100.00%		O84192              	100.00%
Bootstrap support for E3NVL0 as seed ortholog is 100%.
Bootstrap support for O84192 as seed ortholog is 100%.

Group of orthologs #29. Best score 361 bits
Score difference with first non-orthologous sequence - C.remanei:361 C.trachomatis:361

E3LKJ1              	100.00%		P0CE13              	100.00%
E3LKW7              	86.56%		
E3LCP3              	78.12%		
E3LCP4              	78.12%		
Bootstrap support for E3LKJ1 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #30. Best score 361 bits
Score difference with first non-orthologous sequence - C.remanei:361 C.trachomatis:361

E3LJ75              	100.00%		Q59321              	100.00%
E3MY85              	57.93%		
Bootstrap support for E3LJ75 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #31. Best score 361 bits
Score difference with first non-orthologous sequence - C.remanei:361 C.trachomatis:361

E3LG28              	100.00%		O84591              	100.00%
Bootstrap support for E3LG28 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #32. Best score 346 bits
Score difference with first non-orthologous sequence - C.remanei:346 C.trachomatis:346

E3LF53              	100.00%		O84823              	100.00%
Bootstrap support for E3LF53 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #33. Best score 330 bits
Score difference with first non-orthologous sequence - C.remanei:330 C.trachomatis:330

E3LLY3              	100.00%		P0CD78              	100.00%
Bootstrap support for E3LLY3 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #34. Best score 321 bits
Score difference with first non-orthologous sequence - C.remanei:321 C.trachomatis:321

E3MC48              	100.00%		O84829              	100.00%
E3LX61              	53.25%		
Bootstrap support for E3MC48 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #35. Best score 319 bits
Score difference with first non-orthologous sequence - C.remanei:192 C.trachomatis:319

E3NLF4              	100.00%		O84035              	100.00%
E3M7Y2              	97.25%		
Bootstrap support for E3NLF4 as seed ortholog is 99%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #36. Best score 314 bits
Score difference with first non-orthologous sequence - C.remanei:314 C.trachomatis:314

E3NTU5              	100.00%		O84148              	100.00%
Bootstrap support for E3NTU5 as seed ortholog is 100%.
Bootstrap support for O84148 as seed ortholog is 100%.

Group of orthologs #37. Best score 312 bits
Score difference with first non-orthologous sequence - C.remanei:112 C.trachomatis:312

E3NEV6              	100.00%		O84248              	100.00%
Bootstrap support for E3NEV6 as seed ortholog is 99%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #38. Best score 309 bits
Score difference with first non-orthologous sequence - C.remanei:124 C.trachomatis:309

E3N753              	100.00%		O84561              	100.00%
Bootstrap support for E3N753 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #39. Best score 304 bits
Score difference with first non-orthologous sequence - C.remanei:169 C.trachomatis:304

E3LPX7              	100.00%		O84546              	100.00%
Bootstrap support for E3LPX7 as seed ortholog is 99%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #40. Best score 302 bits
Score difference with first non-orthologous sequence - C.remanei:302 C.trachomatis:302

E3MCL2              	100.00%		P0CE09              	100.00%
E3LZ13              	20.63%		
E3MFI3              	5.91%		
Bootstrap support for E3MCL2 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #41. Best score 300 bits
Score difference with first non-orthologous sequence - C.remanei:238 C.trachomatis:300

E3LQL8              	100.00%		O84786              	100.00%
Bootstrap support for E3LQL8 as seed ortholog is 100%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #42. Best score 293 bits
Score difference with first non-orthologous sequence - C.remanei:293 C.trachomatis:293

E3MFG1              	100.00%		P0CE21              	100.00%
E3M7J6              	44.24%		
Bootstrap support for E3MFG1 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #43. Best score 287 bits
Score difference with first non-orthologous sequence - C.remanei:287 C.trachomatis:287

E3M710              	100.00%		O84315              	100.00%
Bootstrap support for E3M710 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #44. Best score 278 bits
Score difference with first non-orthologous sequence - C.remanei:278 C.trachomatis:278

E3NEX2              	100.00%		O84849              	100.00%
Bootstrap support for E3NEX2 as seed ortholog is 100%.
Bootstrap support for O84849 as seed ortholog is 100%.

Group of orthologs #45. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:274 C.trachomatis:274

E3LWY9              	100.00%		O84439              	100.00%
Bootstrap support for E3LWY9 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #46. Best score 274 bits
Score difference with first non-orthologous sequence - C.remanei:274 C.trachomatis:274

E3NV60              	100.00%		O84101              	100.00%
Bootstrap support for E3NV60 as seed ortholog is 100%.
Bootstrap support for O84101 as seed ortholog is 100%.

Group of orthologs #47. Best score 270 bits
Score difference with first non-orthologous sequence - C.remanei:114 C.trachomatis:124

E3LTJ2              	100.00%		O84249              	100.00%
E3LTJ0              	94.44%		
Bootstrap support for E3LTJ2 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 99%.

Group of orthologs #48. Best score 267 bits
Score difference with first non-orthologous sequence - C.remanei:153 C.trachomatis:267

E3N7P5              	100.00%		O84211              	100.00%
Bootstrap support for E3N7P5 as seed ortholog is 99%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #49. Best score 267 bits
Score difference with first non-orthologous sequence - C.remanei:267 C.trachomatis:267

E3NWP7              	100.00%		O84693              	100.00%
Bootstrap support for E3NWP7 as seed ortholog is 100%.
Bootstrap support for O84693 as seed ortholog is 100%.

Group of orthologs #50. Best score 264 bits
Score difference with first non-orthologous sequence - C.remanei:264 C.trachomatis:264

E3MK05              	100.00%		O84828              	100.00%
E3MK12              	100.00%		
E3M2E2              	13.69%		
Bootstrap support for E3MK05 as seed ortholog is 100%.
Bootstrap support for E3MK12 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #51. Best score 264 bits
Score difference with first non-orthologous sequence - C.remanei:151 C.trachomatis:200

E3NVI8              	100.00%		O84822              	100.00%
Bootstrap support for E3NVI8 as seed ortholog is 99%.
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #52. Best score 263 bits
Score difference with first non-orthologous sequence - C.remanei:263 C.trachomatis:263

E3N5G7              	100.00%		O84316              	100.00%
E3M749              	13.53%		
E3NUH3              	7.33%		
Bootstrap support for E3N5G7 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #53. Best score 263 bits
Score difference with first non-orthologous sequence - C.remanei:132 C.trachomatis:263

E3NBT5              	100.00%		O84006              	100.00%
Bootstrap support for E3NBT5 as seed ortholog is 99%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #54. Best score 260 bits
Score difference with first non-orthologous sequence - C.remanei:10 C.trachomatis:260

E3LWN2              	100.00%		O84352              	100.00%
E3LNS4              	11.96%		
Bootstrap support for E3LWN2 as seed ortholog is 59%.
Alternative seed ortholog is E3NWD7 (10 bits away from this cluster)
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #55. Best score 259 bits
Score difference with first non-orthologous sequence - C.remanei:109 C.trachomatis:259

E3NKR5              	100.00%		O84698              	100.00%
E3N550              	41.57%		
E3NPZ6              	41.17%		
E3M7B9              	18.46%		
E3M112              	11.16%		
Bootstrap support for E3NKR5 as seed ortholog is 98%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #56. Best score 259 bits
Score difference with first non-orthologous sequence - C.remanei:259 C.trachomatis:259

E3MYB1              	100.00%		O84451              	100.00%
Bootstrap support for E3MYB1 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #57. Best score 255 bits
Score difference with first non-orthologous sequence - C.remanei:181 C.trachomatis:255

E3LEM2              	100.00%		O84309              	100.00%
E3MX83              	77.49%		
Bootstrap support for E3LEM2 as seed ortholog is 99%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #58. Best score 255 bits
Score difference with first non-orthologous sequence - C.remanei:255 C.trachomatis:255

E3M911              	100.00%		P0CD72              	100.00%
Bootstrap support for E3M911 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #59. Best score 254 bits
Score difference with first non-orthologous sequence - C.remanei:43 C.trachomatis:254

E3LM22              	100.00%		O84797              	100.00%
Bootstrap support for E3LM22 as seed ortholog is 74%.
Alternative seed ortholog is E3MGA9 (43 bits away from this cluster)
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #60. Best score 252 bits
Score difference with first non-orthologous sequence - C.remanei:252 C.trachomatis:252

E3LN57              	100.00%		O84094              	100.00%
Bootstrap support for E3LN57 as seed ortholog is 100%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #61. Best score 249 bits
Score difference with first non-orthologous sequence - C.remanei:110 C.trachomatis:94

E3LTG4              	100.00%		O84058              	100.00%
Bootstrap support for E3LTG4 as seed ortholog is 99%.
Bootstrap support for O84058 as seed ortholog is 98%.

Group of orthologs #62. Best score 248 bits
Score difference with first non-orthologous sequence - C.remanei:8 C.trachomatis:248

E3LM51              	100.00%		O84787              	100.00%
Bootstrap support for E3LM51 as seed ortholog is 53%.
Alternative seed ortholog is E3NTP7 (8 bits away from this cluster)
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #63. Best score 248 bits
Score difference with first non-orthologous sequence - C.remanei:103 C.trachomatis:248

E3NSS2              	100.00%		O84049              	100.00%
Bootstrap support for E3NSS2 as seed ortholog is 99%.
Bootstrap support for O84049 as seed ortholog is 100%.

Group of orthologs #64. Best score 245 bits
Score difference with first non-orthologous sequence - C.remanei:245 C.trachomatis:245

E3M7U3              	100.00%		O84188              	100.00%
Bootstrap support for E3M7U3 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #65. Best score 242 bits
Score difference with first non-orthologous sequence - C.remanei:23 C.trachomatis:242

E3NX24              	100.00%		O84775              	100.00%
Bootstrap support for E3NX24 as seed ortholog is 70%.
Alternative seed ortholog is E3M353 (23 bits away from this cluster)
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #66. Best score 241 bits
Score difference with first non-orthologous sequence - C.remanei:241 C.trachomatis:241

E3NWM4              	100.00%		O84196              	100.00%
E3MSU1              	7.96%		
E3NVC2              	6.11%		
Bootstrap support for E3NWM4 as seed ortholog is 100%.
Bootstrap support for O84196 as seed ortholog is 100%.

Group of orthologs #67. Best score 230 bits
Score difference with first non-orthologous sequence - C.remanei:230 C.trachomatis:230

E3MMZ7              	100.00%		O84360              	100.00%
Bootstrap support for E3MMZ7 as seed ortholog is 100%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #68. Best score 229 bits
Score difference with first non-orthologous sequence - C.remanei:59 C.trachomatis:229

E3LMW9              	100.00%		O84296              	100.00%
Bootstrap support for E3LMW9 as seed ortholog is 97%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #69. Best score 224 bits
Score difference with first non-orthologous sequence - C.remanei:224 C.trachomatis:224

E3LDM4              	100.00%		O84642              	100.00%
E3LXN7              	100.00%		
E3MAN8              	22.72%		
E3MAN7              	5.31%		
Bootstrap support for E3LDM4 as seed ortholog is 100%.
Bootstrap support for E3LXN7 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #70. Best score 224 bits
Score difference with first non-orthologous sequence - C.remanei:224 C.trachomatis:224

E3M7T2              	100.00%		O84289              	100.00%
Bootstrap support for E3M7T2 as seed ortholog is 100%.
Bootstrap support for O84289 as seed ortholog is 100%.

Group of orthologs #71. Best score 222 bits
Score difference with first non-orthologous sequence - C.remanei:222 C.trachomatis:222

E3LTA5              	100.00%		O84562              	100.00%
E3NVT2              	100.00%		
Bootstrap support for E3LTA5 as seed ortholog is 100%.
Bootstrap support for E3NVT2 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #72. Best score 222 bits
Score difference with first non-orthologous sequence - C.remanei:179 C.trachomatis:222

E3LUU6              	100.00%		O84381              	100.00%
Bootstrap support for E3LUU6 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #73. Best score 217 bits
Score difference with first non-orthologous sequence - C.remanei:141 C.trachomatis:217

E3NMY0              	100.00%		O84687              	100.00%
Bootstrap support for E3NMY0 as seed ortholog is 100%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #74. Best score 215 bits
Score difference with first non-orthologous sequence - C.remanei:215 C.trachomatis:215

E3NWG4              	100.00%		O84295              	100.00%
Bootstrap support for E3NWG4 as seed ortholog is 100%.
Bootstrap support for O84295 as seed ortholog is 100%.

Group of orthologs #75. Best score 214 bits
Score difference with first non-orthologous sequence - C.remanei:42 C.trachomatis:214

E3MNW2              	100.00%		O84345              	100.00%
Bootstrap support for E3MNW2 as seed ortholog is 91%.
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #76. Best score 210 bits
Score difference with first non-orthologous sequence - C.remanei:210 C.trachomatis:96

E3NDD3              	100.00%		O84028              	100.00%
Bootstrap support for E3NDD3 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 99%.

Group of orthologs #77. Best score 207 bits
Score difference with first non-orthologous sequence - C.remanei:81 C.trachomatis:207

E3M9X8              	100.00%		P38004              	100.00%
E3LZF6              	30.96%		
Bootstrap support for E3M9X8 as seed ortholog is 99%.
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #78. Best score 207 bits
Score difference with first non-orthologous sequence - C.remanei:207 C.trachomatis:207

E3NA95              	100.00%		P36431              	100.00%
Bootstrap support for E3NA95 as seed ortholog is 100%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #79. Best score 203 bits
Score difference with first non-orthologous sequence - C.remanei:43 C.trachomatis:111

E3MXG2              	100.00%		O84406              	100.00%
E3NAU3              	56.37%		
E3LEX7              	36.87%		
E3MM21              	27.59%		
E3M7D6              	25.86%		
E3LDJ0              	18.44%		
E3M6V2              	16.58%		
E3NTM4              	15.78%		
Bootstrap support for E3MXG2 as seed ortholog is 86%.
Bootstrap support for O84406 as seed ortholog is 99%.

Group of orthologs #80. Best score 201 bits
Score difference with first non-orthologous sequence - C.remanei:105 C.trachomatis:201

E3LMQ6              	100.00%		O84596              	100.00%
E3MUE2              	100.00%		
Bootstrap support for E3LMQ6 as seed ortholog is 97%.
Bootstrap support for E3MUE2 as seed ortholog is 97%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #81. Best score 200 bits
Score difference with first non-orthologous sequence - C.remanei:200 C.trachomatis:61

E3NE73              	100.00%		O84712              	100.00%
Bootstrap support for E3NE73 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 99%.

Group of orthologs #82. Best score 199 bits
Score difference with first non-orthologous sequence - C.remanei:49 C.trachomatis:199

E3LX90              	100.00%		O84266              	100.00%
E3LMF2              	40.72%		
E3LQD7              	30.97%		
E3MN99              	18.77%		
E3LJ95              	8.81%		
E3NIZ2              	8.59%		
E3NNH2              	8.59%		
E3LMD8              	8.16%		
E3MK55              	6.28%		
Bootstrap support for E3LX90 as seed ortholog is 87%.
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #83. Best score 199 bits
Score difference with first non-orthologous sequence - C.remanei:199 C.trachomatis:199

E3M643              	100.00%		O84065              	100.00%
Bootstrap support for E3M643 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #84. Best score 194 bits
Score difference with first non-orthologous sequence - C.remanei:49 C.trachomatis:194

E3LN36              	100.00%		O84423              	100.00%
Bootstrap support for E3LN36 as seed ortholog is 96%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #85. Best score 191 bits
Score difference with first non-orthologous sequence - C.remanei:191 C.trachomatis:191

E3LUF3              	100.00%		O84812              	100.00%
Bootstrap support for E3LUF3 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #86. Best score 190 bits
Score difference with first non-orthologous sequence - C.remanei:190 C.trachomatis:190

E3LRM7              	100.00%		O84332              	100.00%
Bootstrap support for E3LRM7 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #87. Best score 184 bits
Score difference with first non-orthologous sequence - C.remanei:122 C.trachomatis:184

E3NU17              	100.00%		O84109              	100.00%
Bootstrap support for E3NU17 as seed ortholog is 99%.
Bootstrap support for O84109 as seed ortholog is 100%.

Group of orthologs #88. Best score 183 bits
Score difference with first non-orthologous sequence - C.remanei:92 C.trachomatis:183

E3M5M9              	100.00%		O84859              	100.00%
E3NQL8              	100.00%		
Bootstrap support for E3M5M9 as seed ortholog is 99%.
Bootstrap support for E3NQL8 as seed ortholog is 99%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #89. Best score 183 bits
Score difference with first non-orthologous sequence - C.remanei:183 C.trachomatis:54

E3MR64              	100.00%		O84026              	100.00%
E3NPB4              	100.00%		
Bootstrap support for E3MR64 as seed ortholog is 100%.
Bootstrap support for E3NPB4 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 91%.

Group of orthologs #90. Best score 181 bits
Score difference with first non-orthologous sequence - C.remanei:115 C.trachomatis:181

E3M4K3              	100.00%		O84608              	100.00%
E3MD04              	29.03%		
Bootstrap support for E3M4K3 as seed ortholog is 99%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #91. Best score 181 bits
Score difference with first non-orthologous sequence - C.remanei:181 C.trachomatis:181

E3MVI1              	100.00%		O84081              	100.00%
Bootstrap support for E3MVI1 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #92. Best score 180 bits
Score difference with first non-orthologous sequence - C.remanei:180 C.trachomatis:180

E3MI29              	100.00%		O84613              	100.00%
Bootstrap support for E3MI29 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #93. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:79 C.trachomatis:171

E3LGW5              	100.00%		O84247              	100.00%
Bootstrap support for E3LGW5 as seed ortholog is 99%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #94. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:171 C.trachomatis:171

E3M8Z3              	100.00%		O84704              	100.00%
Bootstrap support for E3M8Z3 as seed ortholog is 100%.
Bootstrap support for O84704 as seed ortholog is 100%.

Group of orthologs #95. Best score 171 bits
Score difference with first non-orthologous sequence - C.remanei:41 C.trachomatis:171

E3MLZ8              	100.00%		O84734              	100.00%
Bootstrap support for E3MLZ8 as seed ortholog is 85%.
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #96. Best score 170 bits
Score difference with first non-orthologous sequence - C.remanei:170 C.trachomatis:170

E3MII4              	100.00%		O84007              	100.00%
Bootstrap support for E3MII4 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #97. Best score 168 bits
Score difference with first non-orthologous sequence - C.remanei:168 C.trachomatis:77

E3MM61              	100.00%		O84755              	100.00%
E3NWD4              	74.38%		
Bootstrap support for E3MM61 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 90%.

Group of orthologs #98. Best score 163 bits
Score difference with first non-orthologous sequence - C.remanei:163 C.trachomatis:163

E3NWM0              	100.00%		O84017              	100.00%
Bootstrap support for E3NWM0 as seed ortholog is 100%.
Bootstrap support for O84017 as seed ortholog is 100%.

Group of orthologs #99. Best score 161 bits
Score difference with first non-orthologous sequence - C.remanei:25 C.trachomatis:161

E3MY43              	100.00%		O84676              	100.00%
                    	       		O84722              	12.72%
Bootstrap support for E3MY43 as seed ortholog is 73%.
Alternative seed ortholog is E3N1I3 (25 bits away from this cluster)
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #100. Best score 157 bits
Score difference with first non-orthologous sequence - C.remanei:157 C.trachomatis:157

E3NMX9              	100.00%		O84872              	100.00%
Bootstrap support for E3NMX9 as seed ortholog is 100%.
Bootstrap support for O84872 as seed ortholog is 100%.

Group of orthologs #101. Best score 156 bits
Score difference with first non-orthologous sequence - C.remanei:88 C.trachomatis:156

E3LSK3              	100.00%		O84234              	100.00%
E3MYE7              	30.26%		
E3NF94              	24.22%		
E3MDL0              	20.85%		
E3MNK9              	15.71%		
E3MPY7              	12.24%		
E3LH50              	11.27%		
E3MPW8              	10.91%		
E3MRV5              	10.12%		
E3MK17              	7.63%		
Bootstrap support for E3LSK3 as seed ortholog is 92%.
Bootstrap support for O84234 as seed ortholog is 100%.

Group of orthologs #102. Best score 155 bits
Score difference with first non-orthologous sequence - C.remanei:67 C.trachomatis:155

E3NWE7              	100.00%		O84533              	100.00%
Bootstrap support for E3NWE7 as seed ortholog is 98%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #103. Best score 154 bits
Score difference with first non-orthologous sequence - C.remanei:78 C.trachomatis:29

E3NU61              	100.00%		O84485              	100.00%
Bootstrap support for E3NU61 as seed ortholog is 97%.
Bootstrap support for O84485 as seed ortholog is 71%.
Alternative seed ortholog is O84202 (29 bits away from this cluster)

Group of orthologs #104. Best score 150 bits
Score difference with first non-orthologous sequence - C.remanei:108 C.trachomatis:150

E3NWU7              	100.00%		O84589              	100.00%
E3MY46              	12.45%		
Bootstrap support for E3NWU7 as seed ortholog is 99%.
Bootstrap support for O84589 as seed ortholog is 100%.

Group of orthologs #105. Best score 149 bits
Score difference with first non-orthologous sequence - C.remanei:14 C.trachomatis:149

E3NU86              	100.00%		O84864              	100.00%
Bootstrap support for E3NU86 as seed ortholog is 61%.
Alternative seed ortholog is E3NX27 (14 bits away from this cluster)
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #106. Best score 148 bits
Score difference with first non-orthologous sequence - C.remanei:85 C.trachomatis:148

E3NV16              	100.00%		O84351              	100.00%
Bootstrap support for E3NV16 as seed ortholog is 99%.
Bootstrap support for O84351 as seed ortholog is 100%.

Group of orthologs #107. Best score 147 bits
Score difference with first non-orthologous sequence - C.remanei:147 C.trachomatis:147

E3MFY3              	100.00%		O84835              	100.00%
E3M8B4              	67.66%		
Bootstrap support for E3MFY3 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #108. Best score 147 bits
Score difference with first non-orthologous sequence - C.remanei:147 C.trachomatis:147

E3M8A7              	100.00%		O84123              	100.00%
Bootstrap support for E3M8A7 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #109. Best score 146 bits
Score difference with first non-orthologous sequence - C.remanei:146 C.trachomatis:146

E3LMP4              	100.00%		O84260              	100.00%
E3LR89              	7.22%		
Bootstrap support for E3LMP4 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 100%.

Group of orthologs #110. Best score 142 bits
Score difference with first non-orthologous sequence - C.remanei:142 C.trachomatis:142

E3MHB2              	100.00%		O84383              	100.00%
Bootstrap support for E3MHB2 as seed ortholog is 100%.
Bootstrap support for O84383 as seed ortholog is 100%.

Group of orthologs #111. Best score 139 bits
Score difference with first non-orthologous sequence - C.remanei:139 C.trachomatis:139

E3NJX5              	100.00%		O84456              	100.00%
Bootstrap support for E3NJX5 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #112. Best score 136 bits
Score difference with first non-orthologous sequence - C.remanei:50 C.trachomatis:23

E3NWU5              	100.00%		O84132              	100.00%
Bootstrap support for E3NWU5 as seed ortholog is 95%.
Bootstrap support for O84132 as seed ortholog is 81%.

Group of orthologs #113. Best score 134 bits
Score difference with first non-orthologous sequence - C.remanei:58 C.trachomatis:134

E3LU47              	100.00%		O84732              	100.00%
E3M6Y9              	50.48%		
E3M0R0              	24.31%		
E3N2N6              	12.72%		
E3LYE2              	12.21%		
E3MFA3              	9.33%		
E3MM86              	7.52%		
E3NDB1              	7.46%		
Bootstrap support for E3LU47 as seed ortholog is 95%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #114. Best score 121 bits
Score difference with first non-orthologous sequence - C.remanei:121 C.trachomatis:121

E3NWH5              	100.00%		O84558              	100.00%
Bootstrap support for E3NWH5 as seed ortholog is 100%.
Bootstrap support for O84558 as seed ortholog is 100%.

Group of orthologs #115. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:119 C.trachomatis:119

E3N917              	100.00%		O84720              	100.00%
E3N930              	100.00%		
Bootstrap support for E3N917 as seed ortholog is 100%.
Bootstrap support for E3N930 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #116. Best score 119 bits
Score difference with first non-orthologous sequence - C.remanei:21 C.trachomatis:119

E3NCI3              	100.00%		O84200              	100.00%
Bootstrap support for E3NCI3 as seed ortholog is 69%.
Alternative seed ortholog is E3LWJ8 (21 bits away from this cluster)
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #117. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:9 C.trachomatis:118

E3M566              	100.00%		O84548              	100.00%
E3M563              	57.88%		
E3M567              	54.78%		
E3MZ08              	26.01%		
Bootstrap support for E3M566 as seed ortholog is 56%.
Alternative seed ortholog is E3LTL5 (9 bits away from this cluster)
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #118. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:118 C.trachomatis:118

E3MY48              	100.00%		O84771              	100.00%
Bootstrap support for E3MY48 as seed ortholog is 100%.
Bootstrap support for O84771 as seed ortholog is 100%.

Group of orthologs #119. Best score 118 bits
Score difference with first non-orthologous sequence - C.remanei:36 C.trachomatis:118

E3NWK8              	100.00%		O84215              	100.00%
Bootstrap support for E3NWK8 as seed ortholog is 88%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #120. Best score 116 bits
Score difference with first non-orthologous sequence - C.remanei:116 C.trachomatis:116

E3LLY5              	100.00%		O84033              	100.00%
Bootstrap support for E3LLY5 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #121. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 C.trachomatis:114

E3MI31              	100.00%		O84649              	100.00%
E3MMT0              	15.61%		
Bootstrap support for E3MI31 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #122. Best score 114 bits
Score difference with first non-orthologous sequence - C.remanei:114 C.trachomatis:114

E3LLY6              	100.00%		O84358              	100.00%
Bootstrap support for E3LLY6 as seed ortholog is 100%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #123. Best score 113 bits
Score difference with first non-orthologous sequence - C.remanei:113 C.trachomatis:113

E3LMJ0              	100.00%		O84212              	100.00%
E3N8C7              	16.71%		
E3LWX6              	8.35%		
Bootstrap support for E3LMJ0 as seed ortholog is 100%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #124. Best score 113 bits
Score difference with first non-orthologous sequence - C.remanei:113 C.trachomatis:113

E3NU82              	100.00%		O84294              	100.00%
Bootstrap support for E3NU82 as seed ortholog is 100%.
Bootstrap support for O84294 as seed ortholog is 100%.

Group of orthologs #125. Best score 112 bits
Score difference with first non-orthologous sequence - C.remanei:112 C.trachomatis:112

E3MKS9              	100.00%		O84435              	100.00%
Bootstrap support for E3MKS9 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #126. Best score 111 bits
Score difference with first non-orthologous sequence - C.remanei:111 C.trachomatis:111

E3LVZ4              	100.00%		O84508              	100.00%
Bootstrap support for E3LVZ4 as seed ortholog is 100%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #127. Best score 110 bits
Score difference with first non-orthologous sequence - C.remanei:31 C.trachomatis:110

E3LUB7              	100.00%		O84599              	100.00%
Bootstrap support for E3LUB7 as seed ortholog is 82%.
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #128. Best score 104 bits
Score difference with first non-orthologous sequence - C.remanei:13 C.trachomatis:104

E3M2W1              	100.00%		O84130              	100.00%
E3MJG4              	7.89%		
E3LFE8              	5.92%		
Bootstrap support for E3M2W1 as seed ortholog is 65%.
Alternative seed ortholog is E3LFT0 (13 bits away from this cluster)
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #129. Best score 104 bits
Score difference with first non-orthologous sequence - C.remanei:104 C.trachomatis:104

E3NFL1              	100.00%		O84241              	100.00%
Bootstrap support for E3NFL1 as seed ortholog is 100%.
Bootstrap support for O84241 as seed ortholog is 100%.

Group of orthologs #130. Best score 104 bits
Score difference with first non-orthologous sequence - C.remanei:104 C.trachomatis:104

E3NX23              	100.00%		O84540              	100.00%
Bootstrap support for E3NX23 as seed ortholog is 100%.
Bootstrap support for O84540 as seed ortholog is 100%.

Group of orthologs #131. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:102 C.trachomatis:102

E3NEF8              	100.00%		O84442              	100.00%
E3NB59              	6.29%		
Bootstrap support for E3NEF8 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #132. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:31 C.trachomatis:102

E3NUQ2              	100.00%		O84703              	100.00%
Bootstrap support for E3NUQ2 as seed ortholog is 88%.
Bootstrap support for O84703 as seed ortholog is 100%.

Group of orthologs #133. Best score 102 bits
Score difference with first non-orthologous sequence - C.remanei:102 C.trachomatis:102

E3NWI7              	100.00%		P0CD75              	100.00%
Bootstrap support for E3NWI7 as seed ortholog is 100%.
Bootstrap support for P0CD75 as seed ortholog is 100%.

Group of orthologs #134. Best score 101 bits
Score difference with first non-orthologous sequence - C.remanei:101 C.trachomatis:101

E3LWY8              	100.00%		O84831              	100.00%
Bootstrap support for E3LWY8 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #135. Best score 97 bits
Score difference with first non-orthologous sequence - C.remanei:97 C.trachomatis:97

E3M581              	100.00%		O84782              	100.00%
E3NPL1              	99.57%		
E3M0I1              	13.14%		
E3M0P0              	9.57%		
E3NU24              	7.14%		
Bootstrap support for E3M581 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #136. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:96 C.trachomatis:96

E3LW76              	100.00%		O84478              	100.00%
Bootstrap support for E3LW76 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #137. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:96 C.trachomatis:96

E3NAX5              	100.00%		O84391              	100.00%
Bootstrap support for E3NAX5 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #138. Best score 96 bits
Score difference with first non-orthologous sequence - C.remanei:96 C.trachomatis:96

E3NWU6              	100.00%		O84131              	100.00%
Bootstrap support for E3NWU6 as seed ortholog is 100%.
Bootstrap support for O84131 as seed ortholog is 100%.

Group of orthologs #139. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 C.trachomatis:94

E3NE07              	100.00%		O84390              	100.00%
Bootstrap support for E3NE07 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #140. Best score 94 bits
Score difference with first non-orthologous sequence - C.remanei:94 C.trachomatis:94

E3NV54              	100.00%		O84605              	100.00%
Bootstrap support for E3NV54 as seed ortholog is 100%.
Bootstrap support for O84605 as seed ortholog is 100%.

Group of orthologs #141. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:90 C.trachomatis:90

E3LXM1              	100.00%		O84578              	100.00%
Bootstrap support for E3LXM1 as seed ortholog is 100%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #142. Best score 90 bits
Score difference with first non-orthologous sequence - C.remanei:40 C.trachomatis:90

E3MEZ3              	100.00%		P66370              	100.00%
Bootstrap support for E3MEZ3 as seed ortholog is 96%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #143. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 C.trachomatis:89

E3LLS7              	100.00%		O84719              	100.00%
E3LS48              	45.15%		
Bootstrap support for E3LLS7 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #144. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:8 C.trachomatis:89

E3MF85              	100.00%		O84530              	100.00%
Bootstrap support for E3MF85 as seed ortholog is 57%.
Alternative seed ortholog is E3NGT7 (8 bits away from this cluster)
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #145. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 C.trachomatis:89

E3MSM1              	100.00%		O84463              	100.00%
Bootstrap support for E3MSM1 as seed ortholog is 100%.
Bootstrap support for O84463 as seed ortholog is 100%.

Group of orthologs #146. Best score 89 bits
Score difference with first non-orthologous sequence - C.remanei:89 C.trachomatis:89

E3NWI6              	100.00%		O84407              	100.00%
Bootstrap support for E3NWI6 as seed ortholog is 100%.
Bootstrap support for O84407 as seed ortholog is 100%.

Group of orthologs #147. Best score 87 bits
Score difference with first non-orthologous sequence - C.remanei:87 C.trachomatis:87

E3N077              	100.00%		O84307              	100.00%
E3M6T1              	44.70%		
E3LF96              	44.35%		
E3MLV8              	40.64%		
E3NUJ8              	32.35%		
E3NR37              	25.80%		
Bootstrap support for E3N077 as seed ortholog is 100%.
Bootstrap support for O84307 as seed ortholog is 100%.

Group of orthologs #148. Best score 86 bits
Score difference with first non-orthologous sequence - C.remanei:12 C.trachomatis:86

E3M6B0              	100.00%		O84851              	100.00%
Bootstrap support for E3M6B0 as seed ortholog is 68%.
Alternative seed ortholog is E3MWE7 (12 bits away from this cluster)
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #149. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:84 C.trachomatis:84

E3ND06              	100.00%		O84781              	100.00%
E3M8Y1              	26.37%		
E3LN08              	24.74%		
E3MHY3              	15.63%		
E3MEX4              	11.12%		
E3MAQ0              	9.88%		
E3LEK6              	8.25%		
E3MG85              	5.66%		
Bootstrap support for E3ND06 as seed ortholog is 100%.
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #150. Best score 84 bits
Score difference with first non-orthologous sequence - C.remanei:84 C.trachomatis:84

E3LS85              	100.00%		O84499              	100.00%
Bootstrap support for E3LS85 as seed ortholog is 100%.
Bootstrap support for O84499 as seed ortholog is 100%.

Group of orthologs #151. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 C.trachomatis:82

E3NCU8              	100.00%		P0CD79              	100.00%
Bootstrap support for E3NCU8 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #152. Best score 82 bits
Score difference with first non-orthologous sequence - C.remanei:82 C.trachomatis:82

E3NIS9              	100.00%		O84595              	100.00%
Bootstrap support for E3NIS9 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #153. Best score 81 bits
Score difference with first non-orthologous sequence - C.remanei:2 C.trachomatis:81

E3NSQ5              	100.00%		O84650              	100.00%
Bootstrap support for E3NSQ5 as seed ortholog is 50%.
Alternative seed ortholog is E3LVM2 (2 bits away from this cluster)
Bootstrap support for O84650 as seed ortholog is 100%.

Group of orthologs #154. Best score 79 bits
Score difference with first non-orthologous sequence - C.remanei:79 C.trachomatis:79

E3MWY3              	100.00%		O84353              	100.00%
Bootstrap support for E3MWY3 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #155. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 C.trachomatis:78

E3LGQ0              	100.00%		O84680              	100.00%
E3LGX7              	57.90%		
E3LGP8              	56.25%		
E3NMV6              	19.30%		
E3MLS1              	13.05%		
E3N7K2              	12.32%		
E3M714              	11.95%		
E3NN80              	11.58%		
E3MLL9              	10.29%		
E3NEA3              	9.01%		
E3LQN6              	7.17%		
E3ND11              	6.62%		
E3NEA7              	6.43%		
E3NKF0              	5.88%		
E3NHA8              	5.51%		
E3ND31              	5.15%		
E3NJC7              	5.15%		
Bootstrap support for E3LGQ0 as seed ortholog is 100%.
Bootstrap support for O84680 as seed ortholog is 100%.

Group of orthologs #156. Best score 78 bits
Score difference with first non-orthologous sequence - C.remanei:78 C.trachomatis:78

E3N9G8              	100.00%		O84321              	100.00%
Bootstrap support for E3N9G8 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #157. Best score 77 bits
Score difference with first non-orthologous sequence - C.remanei:77 C.trachomatis:77

E3MMT3              	100.00%		O84139              	100.00%
Bootstrap support for E3MMT3 as seed ortholog is 100%.
Bootstrap support for O84139 as seed ortholog is 100%.

Group of orthologs #158. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 C.trachomatis:76

E3NU74              	100.00%		O84141              	100.00%
                    	       		O84178              	7.39%
                    	       		O84201              	7.26%
Bootstrap support for E3NU74 as seed ortholog is 100%.
Bootstrap support for O84141 as seed ortholog is 100%.

Group of orthologs #159. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:76 C.trachomatis:76

E3LQ46              	100.00%		O84686              	100.00%
Bootstrap support for E3LQ46 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #160. Best score 76 bits
Score difference with first non-orthologous sequence - C.remanei:26 C.trachomatis:76

E3NUX0              	100.00%		O84777              	100.00%
Bootstrap support for E3NUX0 as seed ortholog is 78%.
Bootstrap support for O84777 as seed ortholog is 100%.

Group of orthologs #161. Best score 75 bits
Score difference with first non-orthologous sequence - C.remanei:75 C.trachomatis:75

E3MP05              	100.00%		O84338              	100.00%
E3MFV2              	17.57%		
E3MCH9              	17.42%		
Bootstrap support for E3MP05 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #162. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:29 C.trachomatis:74

E3LYX5              	100.00%		P0CD81              	100.00%
Bootstrap support for E3LYX5 as seed ortholog is 88%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #163. Best score 74 bits
Score difference with first non-orthologous sequence - C.remanei:6 C.trachomatis:74

E3NWR8              	100.00%		P0C0Z8              	100.00%
Bootstrap support for E3NWR8 as seed ortholog is 65%.
Alternative seed ortholog is E3MNJ3 (6 bits away from this cluster)
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #164. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:7 C.trachomatis:73

E3LNJ6              	100.00%		P0CE03              	100.00%
Bootstrap support for E3LNJ6 as seed ortholog is 70%.
Alternative seed ortholog is E3LSW7 (7 bits away from this cluster)
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #165. Best score 73 bits
Score difference with first non-orthologous sequence - C.remanei:73 C.trachomatis:73

E3MC04              	100.00%		O84284              	100.00%
Bootstrap support for E3MC04 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #166. Best score 72 bits
Score difference with first non-orthologous sequence - C.remanei:28 C.trachomatis:72

E3NVZ0              	100.00%		O84467              	100.00%
Bootstrap support for E3NVZ0 as seed ortholog is 68%.
Alternative seed ortholog is E3N3A6 (28 bits away from this cluster)
Bootstrap support for O84467 as seed ortholog is 100%.

Group of orthologs #167. Best score 68 bits
Score difference with first non-orthologous sequence - C.remanei:68 C.trachomatis:68

E3MFY7              	100.00%		O84658              	100.00%
E3MEP5              	27.11%		
E3MGW1              	19.71%		
E3NGE1              	16.73%		
E3MNX1              	13.23%		
E3MNY7              	11.93%		
E3MG29              	8.17%		
E3MNY8              	7.39%		
E3MTL8              	6.74%		
E3N826              	6.10%		
E3NJY3              	5.58%		
Bootstrap support for E3MFY7 as seed ortholog is 100%.
Bootstrap support for O84658 as seed ortholog is 100%.

Group of orthologs #168. Best score 68 bits
Score difference with first non-orthologous sequence - C.remanei:68 C.trachomatis:68

E3NUC9              	100.00%		O84441              	100.00%
Bootstrap support for E3NUC9 as seed ortholog is 100%.
Bootstrap support for O84441 as seed ortholog is 100%.

Group of orthologs #169. Best score 67 bits
Score difference with first non-orthologous sequence - C.remanei:67 C.trachomatis:67

E3MT05              	100.00%		O84496              	100.00%
E3MGK3              	12.84%		
Bootstrap support for E3MT05 as seed ortholog is 100%.
Bootstrap support for O84496 as seed ortholog is 100%.

Group of orthologs #170. Best score 66 bits
Score difference with first non-orthologous sequence - C.remanei:5 C.trachomatis:66

E3MN08              	100.00%		O84544              	100.00%
E3NM84              	15.70%		
E3LM32              	6.40%		
Bootstrap support for E3MN08 as seed ortholog is 62%.
Alternative seed ortholog is E3LTM5 (5 bits away from this cluster)
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #171. Best score 65 bits
Score difference with first non-orthologous sequence - C.remanei:65 C.trachomatis:65

E3NWY3              	100.00%		O84366              	100.00%
Bootstrap support for E3NWY3 as seed ortholog is 100%.
Bootstrap support for O84366 as seed ortholog is 100%.

Group of orthologs #172. Best score 64 bits
Score difference with first non-orthologous sequence - C.remanei:64 C.trachomatis:64

E3NC54              	100.00%		P0CE06              	100.00%
E3NSA1              	95.74%		
Bootstrap support for E3NC54 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #173. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 C.trachomatis:62

E3M562              	100.00%		O84547              	100.00%
E3NR43              	100.00%		
Bootstrap support for E3M562 as seed ortholog is 100%.
Bootstrap support for E3NR43 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #174. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:16 C.trachomatis:62

E3LVK9              	100.00%		O84618              	100.00%
Bootstrap support for E3LVK9 as seed ortholog is 72%.
Alternative seed ortholog is E3NWQ4 (16 bits away from this cluster)
Bootstrap support for O84618 as seed ortholog is 100%.

Group of orthologs #175. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 C.trachomatis:62

E3NCK4              	100.00%		O84128              	100.00%
Bootstrap support for E3NCK4 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #176. Best score 62 bits
Score difference with first non-orthologous sequence - C.remanei:62 C.trachomatis:62

E3NTH1              	100.00%		O84395              	100.00%
Bootstrap support for E3NTH1 as seed ortholog is 100%.
Bootstrap support for O84395 as seed ortholog is 100%.

Group of orthologs #177. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 C.trachomatis:61

E3M2I8              	100.00%		O84379              	100.00%
E3MRB1              	67.09%		
E3MD80              	32.70%		
E3MD82              	32.60%		
E3MQB8              	20.86%		
E3MYI4              	19.08%		
E3MDM8              	17.51%		
E3MBI4              	13.73%		
E3M5V4              	12.89%		
E3NE59              	11.01%		
E3NS89              	7.23%		
Bootstrap support for E3M2I8 as seed ortholog is 100%.
Bootstrap support for O84379 as seed ortholog is 100%.

Group of orthologs #178. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 C.trachomatis:61

E3NSA2              	100.00%		O84189              	100.00%
E3NC55              	97.94%		
Bootstrap support for E3NSA2 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #179. Best score 61 bits
Score difference with first non-orthologous sequence - C.remanei:61 C.trachomatis:61

E3NWG8              	100.00%		O84218              	100.00%
E3NVQ4              	21.87%		
Bootstrap support for E3NWG8 as seed ortholog is 100%.
Bootstrap support for O84218 as seed ortholog is 100%.

Group of orthologs #180. Best score 59 bits
Score difference with first non-orthologous sequence - C.remanei:59 C.trachomatis:59

E3LTB8              	100.00%		P36424              	100.00%
Bootstrap support for E3LTB8 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #181. Best score 59 bits
Score difference with first non-orthologous sequence - C.remanei:59 C.trachomatis:59

E3M4Z4              	100.00%		P0A4C8              	100.00%
Bootstrap support for E3M4Z4 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #182. Best score 57 bits
Score difference with first non-orthologous sequence - C.remanei:57 C.trachomatis:57

E3MI40              	100.00%		O84239              	100.00%
E3LSW9              	20.30%		
Bootstrap support for E3MI40 as seed ortholog is 100%.
Bootstrap support for O84239 as seed ortholog is 100%.

Group of orthologs #183. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 C.trachomatis:54

E3N4Q8              	100.00%		O84682              	100.00%
E3LD29              	63.76%		
E3MYG8              	57.01%		
Bootstrap support for E3N4Q8 as seed ortholog is 100%.
Bootstrap support for O84682 as seed ortholog is 100%.

Group of orthologs #184. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 C.trachomatis:54

E3LJ74              	100.00%		O84469              	100.00%
Bootstrap support for E3LJ74 as seed ortholog is 100%.
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #185. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 C.trachomatis:54

E3LWQ6              	100.00%		O84527              	100.00%
Bootstrap support for E3LWQ6 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #186. Best score 54 bits
Score difference with first non-orthologous sequence - C.remanei:54 C.trachomatis:54

E3NEN2              	100.00%		P0CE04              	100.00%
Bootstrap support for E3NEN2 as seed ortholog is 100%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #187. Best score 53 bits
Score difference with first non-orthologous sequence - C.remanei:53 C.trachomatis:53

E3MXS0              	100.00%		O84147              	100.00%
E3LFY1              	27.73%		
E3MYC3              	15.25%		
E3LY11              	10.68%		
E3MSM3              	9.72%		
E3LZM3              	9.60%		
E3N784              	9.60%		
E3MKD6              	9.00%		
E3LEQ7              	9.00%		
E3MIX4              	8.76%		
E3MFF5              	8.76%		
E3NWW4              	8.52%		
E3LY79              	8.04%		
E3MKH7              	6.72%		
E3MLU2              	6.60%		
E3LEU3              	5.52%		
E3N911              	5.16%		
E3MDW2              	5.04%		
Bootstrap support for E3MXS0 as seed ortholog is 100%.
Bootstrap support for O84147 as seed ortholog is 100%.

Group of orthologs #188. Best score 52 bits
Score difference with first non-orthologous sequence - C.remanei:52 C.trachomatis:52

E3NUL1              	100.00%		O84412              	100.00%
Bootstrap support for E3NUL1 as seed ortholog is 100%.
Bootstrap support for O84412 as seed ortholog is 100%.

Group of orthologs #189. Best score 51 bits
Score difference with first non-orthologous sequence - C.remanei:51 C.trachomatis:51

E3N1Q2              	100.00%		P0CE02              	100.00%
Bootstrap support for E3N1Q2 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #190. Best score 50 bits
Score difference with first non-orthologous sequence - C.remanei:50 C.trachomatis:50

E3M5B0              	100.00%		P0CD80              	100.00%
E3NQ82              	100.00%		
Bootstrap support for E3M5B0 as seed ortholog is 100%.
Bootstrap support for E3NQ82 as seed ortholog is 100%.
Bootstrap support for P0CD80 as seed ortholog is 100%.

Group of orthologs #191. Best score 50 bits
Score difference with first non-orthologous sequence - C.remanei:50 C.trachomatis:50

E3NUG4              	100.00%		O84013              	100.00%
Bootstrap support for E3NUG4 as seed ortholog is 100%.
Bootstrap support for O84013 as seed ortholog is 100%.

Group of orthologs #192. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 C.trachomatis:49

E3LIT7              	100.00%		O84459              	100.00%
E3MB24              	20.15%		
Bootstrap support for E3LIT7 as seed ortholog is 100%.
Bootstrap support for O84459 as seed ortholog is 100%.

Group of orthologs #193. Best score 49 bits
Score difference with first non-orthologous sequence - C.remanei:49 C.trachomatis:49

E3MFG7              	100.00%		O84507              	100.00%
Bootstrap support for E3MFG7 as seed ortholog is 100%.
Bootstrap support for O84507 as seed ortholog is 100%.

Group of orthologs #194. Best score 48 bits
Score difference with first non-orthologous sequence - C.remanei:48 C.trachomatis:48

E3NVI7              	100.00%		O84483              	100.00%
E3NWH4              	20.06%		
E3M690              	9.74%		
Bootstrap support for E3NVI7 as seed ortholog is 100%.
Bootstrap support for O84483 as seed ortholog is 100%.

Group of orthologs #195. Best score 48 bits
Score difference with first non-orthologous sequence - C.remanei:48 C.trachomatis:48

E3NUZ4              	100.00%		O84263              	100.00%
                    	       		O84541              	13.08%
Bootstrap support for E3NUZ4 as seed ortholog is 100%.
Bootstrap support for O84263 as seed ortholog is 100%.

Group of orthologs #196. Best score 47 bits
Score difference with first non-orthologous sequence - C.remanei:47 C.trachomatis:47

E3NE18              	100.00%		O84127              	100.00%
Bootstrap support for E3NE18 as seed ortholog is 100%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #197. Best score 45 bits
Score difference with first non-orthologous sequence - C.remanei:45 C.trachomatis:45

E3MSU0              	100.00%		O84778              	100.00%
Bootstrap support for E3MSU0 as seed ortholog is 100%.
Bootstrap support for O84778 as seed ortholog is 100%.

Group of orthologs #198. Best score 45 bits
Score difference with first non-orthologous sequence - C.remanei:45 C.trachomatis:45

E3MZJ0              	100.00%		O84027              	100.00%
Bootstrap support for E3MZJ0 as seed ortholog is 100%.
Bootstrap support for O84027 as seed ortholog is 100%.

Group of orthologs #199. Best score 45 bits
Score difference with first non-orthologous sequence - C.remanei:45 C.trachomatis:45

E3NVS3              	100.00%		O84635              	100.00%
Bootstrap support for E3NVS3 as seed ortholog is 100%.
Bootstrap support for O84635 as seed ortholog is 100%.

Group of orthologs #200. Best score 44 bits
Score difference with first non-orthologous sequence - C.remanei:44 C.trachomatis:44

E3M7Y9              	100.00%		P0CE05              	100.00%
Bootstrap support for E3M7Y9 as seed ortholog is 100%.
Bootstrap support for P0CE05 as seed ortholog is 100%.