###################################
1018 groups of orthologs
1129 in-paralogs from C.neoformans
1059 in-paralogs from P.vivax
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3213 bits
Score difference with first non-orthologous sequence - C.neoformans:3213 P.vivax:2128

Q5KFR9              	100.00%		A5KA19              	100.00%
Bootstrap support for Q5KFR9 as seed ortholog is 100%.
Bootstrap support for A5KA19 as seed ortholog is 100%.

Group of orthologs #2. Best score 3203 bits
Score difference with first non-orthologous sequence - C.neoformans:3203 P.vivax:3203

Q5KPW2              	100.00%		A5KAP1              	100.00%
Bootstrap support for Q5KPW2 as seed ortholog is 100%.
Bootstrap support for A5KAP1 as seed ortholog is 100%.

Group of orthologs #3. Best score 1444 bits
Score difference with first non-orthologous sequence - C.neoformans:1444 P.vivax:1444

Q5KGG3              	100.00%		A5K7P4              	100.00%
Bootstrap support for Q5KGG3 as seed ortholog is 100%.
Bootstrap support for A5K7P4 as seed ortholog is 100%.

Group of orthologs #4. Best score 1322 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.vivax:1322

Q5KNM2              	100.00%		A5JZ73              	100.00%
Bootstrap support for Q5KNM2 as seed ortholog is 100%.
Bootstrap support for A5JZ73 as seed ortholog is 100%.

Group of orthologs #5. Best score 1321 bits
Score difference with first non-orthologous sequence - C.neoformans:1321 P.vivax:455

Q5KET5              	100.00%		A5K663              	100.00%
Bootstrap support for Q5KET5 as seed ortholog is 100%.
Bootstrap support for A5K663 as seed ortholog is 100%.

Group of orthologs #6. Best score 1174 bits
Score difference with first non-orthologous sequence - C.neoformans:1174 P.vivax:1174

Q5KIB7              	100.00%		A5KBW7              	100.00%
Bootstrap support for Q5KIB7 as seed ortholog is 100%.
Bootstrap support for A5KBW7 as seed ortholog is 100%.

Group of orthologs #7. Best score 1148 bits
Score difference with first non-orthologous sequence - C.neoformans:1148 P.vivax:1148

Q5KC33              	100.00%		A5K0G6              	100.00%
Bootstrap support for Q5KC33 as seed ortholog is 100%.
Bootstrap support for A5K0G6 as seed ortholog is 100%.

Group of orthologs #8. Best score 1130 bits
Score difference with first non-orthologous sequence - C.neoformans:1130 P.vivax:1130

Q5KA63              	100.00%		A5K0P7              	100.00%
Bootstrap support for Q5KA63 as seed ortholog is 100%.
Bootstrap support for A5K0P7 as seed ortholog is 100%.

Group of orthologs #9. Best score 1066 bits
Score difference with first non-orthologous sequence - C.neoformans:1066 P.vivax:1066

Q5KP97              	100.00%		A5K0R4              	100.00%
Bootstrap support for Q5KP97 as seed ortholog is 100%.
Bootstrap support for A5K0R4 as seed ortholog is 100%.

Group of orthologs #10. Best score 1049 bits
Score difference with first non-orthologous sequence - C.neoformans:1049 P.vivax:1049

Q5KBW5              	100.00%		A5KBA4              	100.00%
Bootstrap support for Q5KBW5 as seed ortholog is 100%.
Bootstrap support for A5KBA4 as seed ortholog is 100%.

Group of orthologs #11. Best score 1048 bits
Score difference with first non-orthologous sequence - C.neoformans:1048 P.vivax:1048

Q5KAK5              	100.00%		A5K0Q5              	100.00%
Bootstrap support for Q5KAK5 as seed ortholog is 100%.
Bootstrap support for A5K0Q5 as seed ortholog is 100%.

Group of orthologs #12. Best score 1031 bits
Score difference with first non-orthologous sequence - C.neoformans:878 P.vivax:860

Q5KHJ9              	100.00%		A5K3P7              	100.00%
Bootstrap support for Q5KHJ9 as seed ortholog is 100%.
Bootstrap support for A5K3P7 as seed ortholog is 100%.

Group of orthologs #13. Best score 1029 bits
Score difference with first non-orthologous sequence - C.neoformans:1029 P.vivax:1029

Q5KGK1              	100.00%		A5K0N0              	100.00%
Bootstrap support for Q5KGK1 as seed ortholog is 100%.
Bootstrap support for A5K0N0 as seed ortholog is 100%.

Group of orthologs #14. Best score 1018 bits
Score difference with first non-orthologous sequence - C.neoformans:1018 P.vivax:1018

Q5KFC9              	100.00%		A5K361              	100.00%
Bootstrap support for Q5KFC9 as seed ortholog is 100%.
Bootstrap support for A5K361 as seed ortholog is 100%.

Group of orthologs #15. Best score 1017 bits
Score difference with first non-orthologous sequence - C.neoformans:574 P.vivax:337

Q5KA71              	100.00%		A5K230              	100.00%
Bootstrap support for Q5KA71 as seed ortholog is 100%.
Bootstrap support for A5K230 as seed ortholog is 100%.

Group of orthologs #16. Best score 1015 bits
Score difference with first non-orthologous sequence - C.neoformans:1015 P.vivax:1015

Q5KFV9              	100.00%		A5K7T9              	100.00%
Bootstrap support for Q5KFV9 as seed ortholog is 100%.
Bootstrap support for A5K7T9 as seed ortholog is 100%.

Group of orthologs #17. Best score 978 bits
Score difference with first non-orthologous sequence - C.neoformans:978 P.vivax:892

Q5KPM2              	100.00%		A5K7X5              	100.00%
Bootstrap support for Q5KPM2 as seed ortholog is 100%.
Bootstrap support for A5K7X5 as seed ortholog is 100%.

Group of orthologs #18. Best score 940 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.vivax:440

Q5KJ25              	100.00%		A5KDZ6              	100.00%
Bootstrap support for Q5KJ25 as seed ortholog is 99%.
Bootstrap support for A5KDZ6 as seed ortholog is 100%.

Group of orthologs #19. Best score 900 bits
Score difference with first non-orthologous sequence - C.neoformans:484 P.vivax:375

Q5K7R6              	100.00%		A5KA88              	100.00%
Bootstrap support for Q5K7R6 as seed ortholog is 100%.
Bootstrap support for A5KA88 as seed ortholog is 100%.

Group of orthologs #20. Best score 897 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.vivax:775

Q5KKM4              	100.00%		A5K5R0              	100.00%
Q5KKP4              	83.61%		
Bootstrap support for Q5KKM4 as seed ortholog is 100%.
Bootstrap support for A5K5R0 as seed ortholog is 100%.

Group of orthologs #21. Best score 879 bits
Score difference with first non-orthologous sequence - C.neoformans:879 P.vivax:879

Q5K9W1              	100.00%		A5KCB2              	100.00%
Bootstrap support for Q5K9W1 as seed ortholog is 100%.
Bootstrap support for A5KCB2 as seed ortholog is 100%.

Group of orthologs #22. Best score 867 bits
Score difference with first non-orthologous sequence - C.neoformans:867 P.vivax:867

Q5KKH8              	100.00%		A5K775              	100.00%
Bootstrap support for Q5KKH8 as seed ortholog is 100%.
Bootstrap support for A5K775 as seed ortholog is 100%.

Group of orthologs #23. Best score 854 bits
Score difference with first non-orthologous sequence - C.neoformans:854 P.vivax:854

P0CR22              	100.00%		A5K8L1              	100.00%
Bootstrap support for P0CR22 as seed ortholog is 100%.
Bootstrap support for A5K8L1 as seed ortholog is 100%.

Group of orthologs #24. Best score 841 bits
Score difference with first non-orthologous sequence - C.neoformans:841 P.vivax:841

P0CN26              	100.00%		A5K2D4              	100.00%
Bootstrap support for P0CN26 as seed ortholog is 100%.
Bootstrap support for A5K2D4 as seed ortholog is 100%.

Group of orthologs #25. Best score 829 bits
Score difference with first non-orthologous sequence - C.neoformans:829 P.vivax:829

Q5KA29              	100.00%		A5JZZ8              	100.00%
Bootstrap support for Q5KA29 as seed ortholog is 100%.
Bootstrap support for A5JZZ8 as seed ortholog is 100%.

Group of orthologs #26. Best score 798 bits
Score difference with first non-orthologous sequence - C.neoformans:414 P.vivax:404

Q5KCV6              	100.00%		A5K9V1              	100.00%
Bootstrap support for Q5KCV6 as seed ortholog is 100%.
Bootstrap support for A5K9V1 as seed ortholog is 100%.

Group of orthologs #27. Best score 797 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.vivax:350

Q5KGT3              	100.00%		A5K2P8              	100.00%
Bootstrap support for Q5KGT3 as seed ortholog is 99%.
Bootstrap support for A5K2P8 as seed ortholog is 100%.

Group of orthologs #28. Best score 791 bits
Score difference with first non-orthologous sequence - C.neoformans:704 P.vivax:791

Q5KBA0              	100.00%		A5KDV6              	100.00%
Bootstrap support for Q5KBA0 as seed ortholog is 100%.
Bootstrap support for A5KDV6 as seed ortholog is 100%.

Group of orthologs #29. Best score 784 bits
Score difference with first non-orthologous sequence - C.neoformans:784 P.vivax:784

Q5KMF6              	100.00%		A5K3D6              	100.00%
Bootstrap support for Q5KMF6 as seed ortholog is 100%.
Bootstrap support for A5K3D6 as seed ortholog is 100%.

Group of orthologs #30. Best score 756 bits
Score difference with first non-orthologous sequence - C.neoformans:756 P.vivax:637

Q5KIQ1              	100.00%		A5K760              	100.00%
Bootstrap support for Q5KIQ1 as seed ortholog is 100%.
Bootstrap support for A5K760 as seed ortholog is 100%.

Group of orthologs #31. Best score 755 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.vivax:628

Q5K6Z6              	100.00%		A5K6P4              	100.00%
Bootstrap support for Q5K6Z6 as seed ortholog is 99%.
Bootstrap support for A5K6P4 as seed ortholog is 100%.

Group of orthologs #32. Best score 755 bits
Score difference with first non-orthologous sequence - C.neoformans:755 P.vivax:755

Q5KMH0              	100.00%		A5K5P2              	100.00%
Bootstrap support for Q5KMH0 as seed ortholog is 100%.
Bootstrap support for A5K5P2 as seed ortholog is 100%.

Group of orthologs #33. Best score 746 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.vivax:300

Q5KEX1              	100.00%		A5K6P1              	100.00%
Bootstrap support for Q5KEX1 as seed ortholog is 99%.
Bootstrap support for A5K6P1 as seed ortholog is 100%.

Group of orthologs #34. Best score 743 bits
Score difference with first non-orthologous sequence - C.neoformans:743 P.vivax:743

Q5KEH7              	100.00%		A5K1R5              	100.00%
Bootstrap support for Q5KEH7 as seed ortholog is 100%.
Bootstrap support for A5K1R5 as seed ortholog is 100%.

Group of orthologs #35. Best score 740 bits
Score difference with first non-orthologous sequence - C.neoformans:740 P.vivax:740

Q5KHW3              	100.00%		A5K1L9              	100.00%
Bootstrap support for Q5KHW3 as seed ortholog is 100%.
Bootstrap support for A5K1L9 as seed ortholog is 100%.

Group of orthologs #36. Best score 738 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.vivax:639

Q5K8W5              	100.00%		A5K4Z9              	100.00%
Bootstrap support for Q5K8W5 as seed ortholog is 100%.
Bootstrap support for A5K4Z9 as seed ortholog is 100%.

Group of orthologs #37. Best score 732 bits
Score difference with first non-orthologous sequence - C.neoformans:665 P.vivax:732

P0CR38              	100.00%		A5K5M4              	100.00%
Bootstrap support for P0CR38 as seed ortholog is 100%.
Bootstrap support for A5K5M4 as seed ortholog is 100%.

Group of orthologs #38. Best score 729 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.vivax:526

Q5KKE7              	100.00%		A5K7A8              	100.00%
Bootstrap support for Q5KKE7 as seed ortholog is 100%.
Bootstrap support for A5K7A8 as seed ortholog is 100%.

Group of orthologs #39. Best score 725 bits
Score difference with first non-orthologous sequence - C.neoformans:725 P.vivax:725

Q5KIF6              	100.00%		A5KB21              	100.00%
Bootstrap support for Q5KIF6 as seed ortholog is 100%.
Bootstrap support for A5KB21 as seed ortholog is 100%.

Group of orthologs #40. Best score 720 bits
Score difference with first non-orthologous sequence - C.neoformans:640 P.vivax:720

Q5K9A5              	100.00%		A5K0L7              	100.00%
Bootstrap support for Q5K9A5 as seed ortholog is 100%.
Bootstrap support for A5K0L7 as seed ortholog is 100%.

Group of orthologs #41. Best score 719 bits
Score difference with first non-orthologous sequence - C.neoformans:719 P.vivax:719

Q5KN88              	100.00%		A5K2T7              	100.00%
Bootstrap support for Q5KN88 as seed ortholog is 100%.
Bootstrap support for A5K2T7 as seed ortholog is 100%.

Group of orthologs #42. Best score 705 bits
Score difference with first non-orthologous sequence - C.neoformans:705 P.vivax:705

Q5KGV5              	100.00%		A5JZB0              	100.00%
Bootstrap support for Q5KGV5 as seed ortholog is 100%.
Bootstrap support for A5JZB0 as seed ortholog is 100%.

Group of orthologs #43. Best score 701 bits
Score difference with first non-orthologous sequence - C.neoformans:343 P.vivax:505

Q5KM62              	100.00%		A5K6A8              	100.00%
                    	       		A5K661              	85.59%
Bootstrap support for Q5KM62 as seed ortholog is 100%.
Bootstrap support for A5K6A8 as seed ortholog is 100%.

Group of orthologs #44. Best score 688 bits
Score difference with first non-orthologous sequence - C.neoformans:688 P.vivax:688

Q5KBW0              	100.00%		A5KAN4              	100.00%
Bootstrap support for Q5KBW0 as seed ortholog is 100%.
Bootstrap support for A5KAN4 as seed ortholog is 100%.

Group of orthologs #45. Best score 680 bits
Score difference with first non-orthologous sequence - C.neoformans:568 P.vivax:680

Q5KMN3              	100.00%		A5K1R7              	100.00%
Bootstrap support for Q5KMN3 as seed ortholog is 100%.
Bootstrap support for A5K1R7 as seed ortholog is 100%.

Group of orthologs #46. Best score 666 bits
Score difference with first non-orthologous sequence - C.neoformans:666 P.vivax:666

Q5KFU0              	100.00%		A5K8M0              	100.00%
Bootstrap support for Q5KFU0 as seed ortholog is 100%.
Bootstrap support for A5K8M0 as seed ortholog is 100%.

Group of orthologs #47. Best score 656 bits
Score difference with first non-orthologous sequence - C.neoformans:656 P.vivax:656

Q5KF97              	100.00%		A5K2T2              	100.00%
Bootstrap support for Q5KF97 as seed ortholog is 100%.
Bootstrap support for A5K2T2 as seed ortholog is 100%.

Group of orthologs #48. Best score 655 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.vivax:165

Q5KDZ1              	100.00%		A5K5U3              	100.00%
Bootstrap support for Q5KDZ1 as seed ortholog is 56%.
Alternative seed ortholog is Q5KPH0 (5 bits away from this cluster)
Bootstrap support for A5K5U3 as seed ortholog is 99%.

Group of orthologs #49. Best score 651 bits
Score difference with first non-orthologous sequence - C.neoformans:542 P.vivax:294

Q5KD67              	100.00%		A5K034              	100.00%
Bootstrap support for Q5KD67 as seed ortholog is 100%.
Bootstrap support for A5K034 as seed ortholog is 100%.

Group of orthologs #50. Best score 649 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.vivax:649

Q5KCR8              	100.00%		A5K466              	100.00%
Bootstrap support for Q5KCR8 as seed ortholog is 99%.
Bootstrap support for A5K466 as seed ortholog is 100%.

Group of orthologs #51. Best score 647 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.vivax:39

Q5KP06              	100.00%		A5K8W3              	100.00%
Bootstrap support for Q5KP06 as seed ortholog is 100%.
Bootstrap support for A5K8W3 as seed ortholog is 93%.

Group of orthologs #52. Best score 644 bits
Score difference with first non-orthologous sequence - C.neoformans:644 P.vivax:644

Q5KDF5              	100.00%		A5JZH3              	100.00%
Bootstrap support for Q5KDF5 as seed ortholog is 100%.
Bootstrap support for A5JZH3 as seed ortholog is 100%.

Group of orthologs #53. Best score 638 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:349

Q5K906              	100.00%		A5K978              	100.00%
Q5KDA3              	100.00%		
Bootstrap support for Q5K906 as seed ortholog is 88%.
Bootstrap support for Q5KDA3 as seed ortholog is 87%.
Bootstrap support for A5K978 as seed ortholog is 100%.

Group of orthologs #54. Best score 634 bits
Score difference with first non-orthologous sequence - C.neoformans:572 P.vivax:634

P0CN30              	100.00%		A5K2H7              	100.00%
Bootstrap support for P0CN30 as seed ortholog is 100%.
Bootstrap support for A5K2H7 as seed ortholog is 100%.

Group of orthologs #55. Best score 621 bits
Score difference with first non-orthologous sequence - C.neoformans:477 P.vivax:621

Q5KGN2              	100.00%		A5K7A5              	100.00%
Bootstrap support for Q5KGN2 as seed ortholog is 100%.
Bootstrap support for A5K7A5 as seed ortholog is 100%.

Group of orthologs #56. Best score 616 bits
Score difference with first non-orthologous sequence - C.neoformans:616 P.vivax:616

Q5KL42              	100.00%		A5K4Y1              	100.00%
Bootstrap support for Q5KL42 as seed ortholog is 100%.
Bootstrap support for A5K4Y1 as seed ortholog is 100%.

Group of orthologs #57. Best score 609 bits
Score difference with first non-orthologous sequence - C.neoformans:609 P.vivax:609

Q5KMU3              	100.00%		A5K4S1              	100.00%
Bootstrap support for Q5KMU3 as seed ortholog is 100%.
Bootstrap support for A5K4S1 as seed ortholog is 100%.

Group of orthologs #58. Best score 606 bits
Score difference with first non-orthologous sequence - C.neoformans:606 P.vivax:606

Q5KB69              	100.00%		A5K865              	100.00%
Bootstrap support for Q5KB69 as seed ortholog is 100%.
Bootstrap support for A5K865 as seed ortholog is 100%.

Group of orthologs #59. Best score 602 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.vivax:602

Q5KJ21              	100.00%		A5K1U9              	100.00%
Bootstrap support for Q5KJ21 as seed ortholog is 99%.
Bootstrap support for A5K1U9 as seed ortholog is 100%.

Group of orthologs #60. Best score 597 bits
Score difference with first non-orthologous sequence - C.neoformans:597 P.vivax:597

Q5KEV8              	100.00%		A5K506              	100.00%
Bootstrap support for Q5KEV8 as seed ortholog is 100%.
Bootstrap support for A5K506 as seed ortholog is 100%.

Group of orthologs #61. Best score 597 bits
Score difference with first non-orthologous sequence - C.neoformans:597 P.vivax:597

Q5KQ47              	100.00%		A5K7M4              	100.00%
Bootstrap support for Q5KQ47 as seed ortholog is 100%.
Bootstrap support for A5K7M4 as seed ortholog is 100%.

Group of orthologs #62. Best score 587 bits
Score difference with first non-orthologous sequence - C.neoformans:587 P.vivax:587

Q5KFB9              	100.00%		A5KBV3              	100.00%
Bootstrap support for Q5KFB9 as seed ortholog is 100%.
Bootstrap support for A5KBV3 as seed ortholog is 100%.

Group of orthologs #63. Best score 586 bits
Score difference with first non-orthologous sequence - C.neoformans:586 P.vivax:586

Q5KBF6              	100.00%		A5K6G8              	100.00%
Bootstrap support for Q5KBF6 as seed ortholog is 100%.
Bootstrap support for A5K6G8 as seed ortholog is 100%.

Group of orthologs #64. Best score 584 bits
Score difference with first non-orthologous sequence - C.neoformans:584 P.vivax:232

Q5KLW7              	100.00%		A5K7I2              	100.00%
Bootstrap support for Q5KLW7 as seed ortholog is 100%.
Bootstrap support for A5K7I2 as seed ortholog is 100%.

Group of orthologs #65. Best score 581 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.vivax:285

P0CO18              	100.00%		A5K5P9              	100.00%
Bootstrap support for P0CO18 as seed ortholog is 99%.
Bootstrap support for A5K5P9 as seed ortholog is 100%.

Group of orthologs #66. Best score 578 bits
Score difference with first non-orthologous sequence - C.neoformans:436 P.vivax:578

Q5KAP2              	100.00%		A5K8Z1              	100.00%
Bootstrap support for Q5KAP2 as seed ortholog is 100%.
Bootstrap support for A5K8Z1 as seed ortholog is 100%.

Group of orthologs #67. Best score 577 bits
Score difference with first non-orthologous sequence - C.neoformans:338 P.vivax:362

Q5KE58              	100.00%		A5K980              	100.00%
Bootstrap support for Q5KE58 as seed ortholog is 100%.
Bootstrap support for A5K980 as seed ortholog is 100%.

Group of orthologs #68. Best score 575 bits
Score difference with first non-orthologous sequence - C.neoformans:575 P.vivax:575

Q5KJT2              	100.00%		A5K463              	100.00%
Bootstrap support for Q5KJT2 as seed ortholog is 100%.
Bootstrap support for A5K463 as seed ortholog is 100%.

Group of orthologs #69. Best score 573 bits
Score difference with first non-orthologous sequence - C.neoformans:573 P.vivax:573

Q5KC69              	100.00%		A5K899              	100.00%
Bootstrap support for Q5KC69 as seed ortholog is 100%.
Bootstrap support for A5K899 as seed ortholog is 100%.

Group of orthologs #70. Best score 573 bits
Score difference with first non-orthologous sequence - C.neoformans:573 P.vivax:573

Q5KLE4              	100.00%		A5K6C9              	100.00%
Bootstrap support for Q5KLE4 as seed ortholog is 100%.
Bootstrap support for A5K6C9 as seed ortholog is 100%.

Group of orthologs #71. Best score 573 bits
Score difference with first non-orthologous sequence - C.neoformans:573 P.vivax:573

Q5KP40              	100.00%		A5KB85              	100.00%
Bootstrap support for Q5KP40 as seed ortholog is 100%.
Bootstrap support for A5KB85 as seed ortholog is 100%.

Group of orthologs #72. Best score 571 bits
Score difference with first non-orthologous sequence - C.neoformans:438 P.vivax:571

Q5KDL3              	100.00%		A5JZA6              	100.00%
Bootstrap support for Q5KDL3 as seed ortholog is 100%.
Bootstrap support for A5JZA6 as seed ortholog is 100%.

Group of orthologs #73. Best score 570 bits
Score difference with first non-orthologous sequence - C.neoformans:570 P.vivax:291

Q5KPX3              	100.00%		A5K058              	100.00%
Bootstrap support for Q5KPX3 as seed ortholog is 100%.
Bootstrap support for A5K058 as seed ortholog is 99%.

Group of orthologs #74. Best score 567 bits
Score difference with first non-orthologous sequence - C.neoformans:567 P.vivax:567

Q5KH77              	100.00%		A5KB20              	100.00%
Bootstrap support for Q5KH77 as seed ortholog is 100%.
Bootstrap support for A5KB20 as seed ortholog is 100%.

Group of orthologs #75. Best score 567 bits
Score difference with first non-orthologous sequence - C.neoformans:567 P.vivax:461

Q5KNR6              	100.00%		A5KEA4              	100.00%
Bootstrap support for Q5KNR6 as seed ortholog is 100%.
Bootstrap support for A5KEA4 as seed ortholog is 100%.

Group of orthologs #76. Best score 560 bits
Score difference with first non-orthologous sequence - C.neoformans:560 P.vivax:560

Q5KAX5              	100.00%		A5KBK8              	100.00%
Bootstrap support for Q5KAX5 as seed ortholog is 100%.
Bootstrap support for A5KBK8 as seed ortholog is 100%.

Group of orthologs #77. Best score 559 bits
Score difference with first non-orthologous sequence - C.neoformans:559 P.vivax:471

Q5KE94              	100.00%		A5K2I5              	100.00%
Bootstrap support for Q5KE94 as seed ortholog is 100%.
Bootstrap support for A5K2I5 as seed ortholog is 100%.

Group of orthologs #78. Best score 557 bits
Score difference with first non-orthologous sequence - C.neoformans:557 P.vivax:470

Q5KPI3              	100.00%		A5KB98              	100.00%
Bootstrap support for Q5KPI3 as seed ortholog is 100%.
Bootstrap support for A5KB98 as seed ortholog is 100%.

Group of orthologs #79. Best score 555 bits
Score difference with first non-orthologous sequence - C.neoformans:371 P.vivax:363

P0CQ80              	100.00%		A5K7L9              	100.00%
Bootstrap support for P0CQ80 as seed ortholog is 100%.
Bootstrap support for A5K7L9 as seed ortholog is 100%.

Group of orthologs #80. Best score 554 bits
Score difference with first non-orthologous sequence - C.neoformans:554 P.vivax:554

Q5KIW8              	100.00%		A5K1C3              	100.00%
Bootstrap support for Q5KIW8 as seed ortholog is 100%.
Bootstrap support for A5K1C3 as seed ortholog is 100%.

Group of orthologs #81. Best score 553 bits
Score difference with first non-orthologous sequence - C.neoformans:408 P.vivax:157

P0CN32              	100.00%		A5K8J4              	100.00%
Bootstrap support for P0CN32 as seed ortholog is 100%.
Bootstrap support for A5K8J4 as seed ortholog is 99%.

Group of orthologs #82. Best score 547 bits
Score difference with first non-orthologous sequence - C.neoformans:547 P.vivax:22

Q5KP96              	100.00%		A5JZZ9              	100.00%
Q5KI71              	7.22%		
Bootstrap support for Q5KP96 as seed ortholog is 100%.
Bootstrap support for A5JZZ9 as seed ortholog is 61%.
Alternative seed ortholog is A5K544 (22 bits away from this cluster)

Group of orthologs #83. Best score 547 bits
Score difference with first non-orthologous sequence - C.neoformans:547 P.vivax:547

P0CR28              	100.00%		A5K2M7              	100.00%
Bootstrap support for P0CR28 as seed ortholog is 100%.
Bootstrap support for A5K2M7 as seed ortholog is 100%.

Group of orthologs #84. Best score 547 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.vivax:281

Q5KME1              	100.00%		A5K185              	100.00%
Bootstrap support for Q5KME1 as seed ortholog is 100%.
Bootstrap support for A5K185 as seed ortholog is 100%.

Group of orthologs #85. Best score 544 bits
Score difference with first non-orthologous sequence - C.neoformans:544 P.vivax:544

Q5K9H1              	100.00%		A5K094              	100.00%
Bootstrap support for Q5K9H1 as seed ortholog is 100%.
Bootstrap support for A5K094 as seed ortholog is 100%.

Group of orthologs #86. Best score 544 bits
Score difference with first non-orthologous sequence - C.neoformans:544 P.vivax:309

Q5KDY4              	100.00%		A5K152              	100.00%
Bootstrap support for Q5KDY4 as seed ortholog is 100%.
Bootstrap support for A5K152 as seed ortholog is 100%.

Group of orthologs #87. Best score 537 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.vivax:537

Q5K7R3              	100.00%		A5K4W3              	100.00%
Bootstrap support for Q5K7R3 as seed ortholog is 100%.
Bootstrap support for A5K4W3 as seed ortholog is 100%.

Group of orthologs #88. Best score 535 bits
Score difference with first non-orthologous sequence - C.neoformans:535 P.vivax:535

Q5KLD7              	100.00%		A5JZU9              	100.00%
Bootstrap support for Q5KLD7 as seed ortholog is 100%.
Bootstrap support for A5JZU9 as seed ortholog is 100%.

Group of orthologs #89. Best score 534 bits
Score difference with first non-orthologous sequence - C.neoformans:391 P.vivax:534

Q5KA27              	100.00%		A5JZ56              	100.00%
Bootstrap support for Q5KA27 as seed ortholog is 100%.
Bootstrap support for A5JZ56 as seed ortholog is 100%.

Group of orthologs #90. Best score 534 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.vivax:316

P0CQ70              	100.00%		A5K370              	100.00%
Bootstrap support for P0CQ70 as seed ortholog is 100%.
Bootstrap support for A5K370 as seed ortholog is 100%.

Group of orthologs #91. Best score 532 bits
Score difference with first non-orthologous sequence - C.neoformans:532 P.vivax:532

Q5KEU7              	100.00%		A5KB47              	100.00%
Bootstrap support for Q5KEU7 as seed ortholog is 100%.
Bootstrap support for A5KB47 as seed ortholog is 100%.

Group of orthologs #92. Best score 531 bits
Score difference with first non-orthologous sequence - C.neoformans:531 P.vivax:531

Q5KNM9              	100.00%		A5KDT1              	100.00%
Bootstrap support for Q5KNM9 as seed ortholog is 100%.
Bootstrap support for A5KDT1 as seed ortholog is 100%.

Group of orthologs #93. Best score 529 bits
Score difference with first non-orthologous sequence - C.neoformans:529 P.vivax:529

Q5KLI4              	100.00%		A5K4K9              	100.00%
Bootstrap support for Q5KLI4 as seed ortholog is 100%.
Bootstrap support for A5K4K9 as seed ortholog is 100%.

Group of orthologs #94. Best score 525 bits
Score difference with first non-orthologous sequence - C.neoformans:287 P.vivax:293

P0CQ72              	100.00%		A5K665              	100.00%
Bootstrap support for P0CQ72 as seed ortholog is 100%.
Bootstrap support for A5K665 as seed ortholog is 100%.

Group of orthologs #95. Best score 525 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.vivax:525

Q5KLV5              	100.00%		A5K5V6              	100.00%
Bootstrap support for Q5KLV5 as seed ortholog is 100%.
Bootstrap support for A5K5V6 as seed ortholog is 100%.

Group of orthologs #96. Best score 524 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.vivax:360

Q5K9Z4              	100.00%		A5KCH9              	100.00%
Bootstrap support for Q5K9Z4 as seed ortholog is 100%.
Bootstrap support for A5KCH9 as seed ortholog is 100%.

Group of orthologs #97. Best score 524 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.vivax:377

Q5KPQ9              	100.00%		A5K3K1              	100.00%
Bootstrap support for Q5KPQ9 as seed ortholog is 99%.
Bootstrap support for A5K3K1 as seed ortholog is 100%.

Group of orthologs #98. Best score 522 bits
Score difference with first non-orthologous sequence - C.neoformans:522 P.vivax:522

Q5KJR9              	100.00%		A5KBZ9              	100.00%
Bootstrap support for Q5KJR9 as seed ortholog is 100%.
Bootstrap support for A5KBZ9 as seed ortholog is 100%.

Group of orthologs #99. Best score 520 bits
Score difference with first non-orthologous sequence - C.neoformans:479 P.vivax:520

Q5KLT9              	100.00%		A5K895              	100.00%
Bootstrap support for Q5KLT9 as seed ortholog is 100%.
Bootstrap support for A5K895 as seed ortholog is 100%.

Group of orthologs #100. Best score 519 bits
Score difference with first non-orthologous sequence - C.neoformans:519 P.vivax:519

Q5KQ25              	100.00%		A5K4B8              	100.00%
Bootstrap support for Q5KQ25 as seed ortholog is 100%.
Bootstrap support for A5K4B8 as seed ortholog is 100%.

Group of orthologs #101. Best score 517 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.vivax:351

Q5KN49              	100.00%		A5K9C9              	100.00%
Bootstrap support for Q5KN49 as seed ortholog is 98%.
Bootstrap support for A5K9C9 as seed ortholog is 100%.

Group of orthologs #102. Best score 516 bits
Score difference with first non-orthologous sequence - C.neoformans:516 P.vivax:516

Q5KE57              	100.00%		A5KB46              	100.00%
Bootstrap support for Q5KE57 as seed ortholog is 100%.
Bootstrap support for A5KB46 as seed ortholog is 100%.

Group of orthologs #103. Best score 516 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:516

Q5KLA7              	100.00%		A5K7I5              	100.00%
Bootstrap support for Q5KLA7 as seed ortholog is 99%.
Bootstrap support for A5K7I5 as seed ortholog is 100%.

Group of orthologs #104. Best score 515 bits
Score difference with first non-orthologous sequence - C.neoformans:413 P.vivax:302

Q5KBB1              	100.00%		A5K8D8              	100.00%
Bootstrap support for Q5KBB1 as seed ortholog is 100%.
Bootstrap support for A5K8D8 as seed ortholog is 100%.

Group of orthologs #105. Best score 514 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.vivax:514

Q5KB11              	100.00%		A5JZ34              	100.00%
Bootstrap support for Q5KB11 as seed ortholog is 99%.
Bootstrap support for A5JZ34 as seed ortholog is 100%.

Group of orthologs #106. Best score 514 bits
Score difference with first non-orthologous sequence - C.neoformans:514 P.vivax:514

Q5KIH6              	100.00%		A5K154              	100.00%
Bootstrap support for Q5KIH6 as seed ortholog is 100%.
Bootstrap support for A5K154 as seed ortholog is 100%.

Group of orthologs #107. Best score 504 bits
Score difference with first non-orthologous sequence - C.neoformans:504 P.vivax:504

Q5K7P1              	100.00%		A5K394              	100.00%
Bootstrap support for Q5K7P1 as seed ortholog is 100%.
Bootstrap support for A5K394 as seed ortholog is 100%.

Group of orthologs #108. Best score 503 bits
Score difference with first non-orthologous sequence - C.neoformans:355 P.vivax:351

P0CQ96              	100.00%		A5KBQ1              	100.00%
Bootstrap support for P0CQ96 as seed ortholog is 100%.
Bootstrap support for A5KBQ1 as seed ortholog is 100%.

Group of orthologs #109. Best score 503 bits
Score difference with first non-orthologous sequence - C.neoformans:503 P.vivax:503

Q5KCG5              	100.00%		A5KBA9              	100.00%
Bootstrap support for Q5KCG5 as seed ortholog is 100%.
Bootstrap support for A5KBA9 as seed ortholog is 100%.

Group of orthologs #110. Best score 502 bits
Score difference with first non-orthologous sequence - C.neoformans:502 P.vivax:502

Q5K7U0              	100.00%		A5K262              	100.00%
Bootstrap support for Q5K7U0 as seed ortholog is 100%.
Bootstrap support for A5K262 as seed ortholog is 100%.

Group of orthologs #111. Best score 497 bits
Score difference with first non-orthologous sequence - C.neoformans:497 P.vivax:241

Q5K7N5              	100.00%		A5JZG0              	100.00%
Bootstrap support for Q5K7N5 as seed ortholog is 100%.
Bootstrap support for A5JZG0 as seed ortholog is 99%.

Group of orthologs #112. Best score 496 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.vivax:298

P0CQ76              	100.00%		A5K3V1              	100.00%
Bootstrap support for P0CQ76 as seed ortholog is 100%.
Bootstrap support for A5K3V1 as seed ortholog is 100%.

Group of orthologs #113. Best score 491 bits
Score difference with first non-orthologous sequence - C.neoformans:491 P.vivax:491

Q5KJ92              	100.00%		A5KCJ5              	100.00%
Bootstrap support for Q5KJ92 as seed ortholog is 100%.
Bootstrap support for A5KCJ5 as seed ortholog is 100%.

Group of orthologs #114. Best score 488 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.vivax:253

P0CQ84              	100.00%		A5K2E0              	100.00%
Bootstrap support for P0CQ84 as seed ortholog is 100%.
Bootstrap support for A5K2E0 as seed ortholog is 100%.

Group of orthologs #115. Best score 488 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.vivax:277

Q5KDW0              	100.00%		A5JZA5              	100.00%
Bootstrap support for Q5KDW0 as seed ortholog is 99%.
Bootstrap support for A5JZA5 as seed ortholog is 100%.

Group of orthologs #116. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.vivax:300

P0CQ88              	100.00%		A5K9H3              	100.00%
Bootstrap support for P0CQ88 as seed ortholog is 100%.
Bootstrap support for A5K9H3 as seed ortholog is 100%.

Group of orthologs #117. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.vivax:483

Q5KE01              	100.00%		A5K6T9              	100.00%
Bootstrap support for Q5KE01 as seed ortholog is 100%.
Bootstrap support for A5K6T9 as seed ortholog is 100%.

Group of orthologs #118. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.vivax:483

Q5KKS9              	100.00%		A5K3A7              	100.00%
Bootstrap support for Q5KKS9 as seed ortholog is 100%.
Bootstrap support for A5K3A7 as seed ortholog is 100%.

Group of orthologs #119. Best score 480 bits
Score difference with first non-orthologous sequence - C.neoformans:480 P.vivax:480

Q5KBI1              	100.00%		A5K1T3              	100.00%
Bootstrap support for Q5KBI1 as seed ortholog is 100%.
Bootstrap support for A5K1T3 as seed ortholog is 100%.

Group of orthologs #120. Best score 478 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.vivax:175

P0CL88              	100.00%		A5K6G3              	100.00%
Bootstrap support for P0CL88 as seed ortholog is 94%.
Bootstrap support for A5K6G3 as seed ortholog is 53%.
Alternative seed ortholog is A5K486 (175 bits away from this cluster)

Group of orthologs #121. Best score 478 bits
Score difference with first non-orthologous sequence - C.neoformans:478 P.vivax:278

Q5KFJ3              	100.00%		A5KA60              	100.00%
Bootstrap support for Q5KFJ3 as seed ortholog is 100%.
Bootstrap support for A5KA60 as seed ortholog is 100%.

Group of orthologs #122. Best score 477 bits
Score difference with first non-orthologous sequence - C.neoformans:477 P.vivax:216

Q5KLP9              	100.00%		A5K2F8              	100.00%
Bootstrap support for Q5KLP9 as seed ortholog is 100%.
Bootstrap support for A5K2F8 as seed ortholog is 100%.

Group of orthologs #123. Best score 476 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.vivax:476

Q5KF65              	100.00%		A5K6X2              	100.00%
Q5KD72              	5.44%		
Bootstrap support for Q5KF65 as seed ortholog is 86%.
Bootstrap support for A5K6X2 as seed ortholog is 100%.

Group of orthologs #124. Best score 474 bits
Score difference with first non-orthologous sequence - C.neoformans:474 P.vivax:474

Q5K9E3              	100.00%		A5KE14              	100.00%
Bootstrap support for Q5K9E3 as seed ortholog is 100%.
Bootstrap support for A5KE14 as seed ortholog is 100%.

Group of orthologs #125. Best score 469 bits
Score difference with first non-orthologous sequence - C.neoformans:469 P.vivax:469

Q5KFS5              	100.00%		A5K132              	100.00%
Bootstrap support for Q5KFS5 as seed ortholog is 100%.
Bootstrap support for A5K132 as seed ortholog is 100%.

Group of orthologs #126. Best score 469 bits
Score difference with first non-orthologous sequence - C.neoformans:469 P.vivax:469

P0CO10              	100.00%		A5KAQ8              	100.00%
Bootstrap support for P0CO10 as seed ortholog is 100%.
Bootstrap support for A5KAQ8 as seed ortholog is 100%.

Group of orthologs #127. Best score 468 bits
Score difference with first non-orthologous sequence - C.neoformans:337 P.vivax:468

Q5K8Q4              	100.00%		A5K9Z9              	100.00%
Bootstrap support for Q5K8Q4 as seed ortholog is 100%.
Bootstrap support for A5K9Z9 as seed ortholog is 100%.

Group of orthologs #128. Best score 463 bits
Score difference with first non-orthologous sequence - C.neoformans:463 P.vivax:463

Q5KBP7              	100.00%		A5K4H8              	100.00%
Bootstrap support for Q5KBP7 as seed ortholog is 100%.
Bootstrap support for A5K4H8 as seed ortholog is 100%.

Group of orthologs #129. Best score 463 bits
Score difference with first non-orthologous sequence - C.neoformans:463 P.vivax:463

Q5KLA1              	100.00%		A5K1C7              	100.00%
Bootstrap support for Q5KLA1 as seed ortholog is 100%.
Bootstrap support for A5K1C7 as seed ortholog is 100%.

Group of orthologs #130. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:412 P.vivax:460

P0CM96              	100.00%		A5K8P6              	100.00%
Bootstrap support for P0CM96 as seed ortholog is 100%.
Bootstrap support for A5K8P6 as seed ortholog is 100%.

Group of orthologs #131. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.vivax:283

Q5KHC6              	100.00%		A5K911              	100.00%
Bootstrap support for Q5KHC6 as seed ortholog is 99%.
Bootstrap support for A5K911 as seed ortholog is 100%.

Group of orthologs #132. Best score 458 bits
Score difference with first non-orthologous sequence - C.neoformans:458 P.vivax:458

Q5K9E9              	100.00%		A5K7F1              	100.00%
Bootstrap support for Q5K9E9 as seed ortholog is 100%.
Bootstrap support for A5K7F1 as seed ortholog is 100%.

Group of orthologs #133. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:310 P.vivax:352

Q5KF69              	100.00%		A5K4A7              	100.00%
                    	       		A5KDI0              	100.00%
Bootstrap support for Q5KF69 as seed ortholog is 100%.
Bootstrap support for A5K4A7 as seed ortholog is 100%.
Bootstrap support for A5KDI0 as seed ortholog is 100%.

Group of orthologs #134. Best score 453 bits
Score difference with first non-orthologous sequence - C.neoformans:453 P.vivax:453

Q5KP62              	100.00%		A5K6T7              	100.00%
Bootstrap support for Q5KP62 as seed ortholog is 100%.
Bootstrap support for A5K6T7 as seed ortholog is 100%.

Group of orthologs #135. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:376 P.vivax:358

Q5KDQ7              	100.00%		A5K7V4              	100.00%
Bootstrap support for Q5KDQ7 as seed ortholog is 100%.
Bootstrap support for A5K7V4 as seed ortholog is 100%.

Group of orthologs #136. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.vivax:379

Q5KI40              	100.00%		A5K525              	100.00%
Bootstrap support for Q5KI40 as seed ortholog is 100%.
Bootstrap support for A5K525 as seed ortholog is 100%.

Group of orthologs #137. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.vivax:451

Q5KFZ4              	100.00%		A5K8C9              	100.00%
Bootstrap support for Q5KFZ4 as seed ortholog is 100%.
Bootstrap support for A5K8C9 as seed ortholog is 100%.

Group of orthologs #138. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:450 P.vivax:450

Q5KN74              	100.00%		A5KA73              	100.00%
                    	       		A5K0X4              	13.84%
Bootstrap support for Q5KN74 as seed ortholog is 100%.
Bootstrap support for A5KA73 as seed ortholog is 100%.

Group of orthologs #139. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:450 P.vivax:450

Q5KP44              	100.00%		A5K6S2              	100.00%
Bootstrap support for Q5KP44 as seed ortholog is 100%.
Bootstrap support for A5K6S2 as seed ortholog is 100%.

Group of orthologs #140. Best score 449 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.vivax:449

Q5KKJ5              	100.00%		A5K9B5              	100.00%
                    	       		A5KDH5              	100.00%
                    	       		A5KDG3              	99.64%
Bootstrap support for Q5KKJ5 as seed ortholog is 98%.
Bootstrap support for A5K9B5 as seed ortholog is 100%.
Bootstrap support for A5KDH5 as seed ortholog is 100%.

Group of orthologs #141. Best score 443 bits
Score difference with first non-orthologous sequence - C.neoformans:443 P.vivax:443

Q5KJ87              	100.00%		A5K9E9              	100.00%
Bootstrap support for Q5KJ87 as seed ortholog is 100%.
Bootstrap support for A5K9E9 as seed ortholog is 100%.

Group of orthologs #142. Best score 442 bits
Score difference with first non-orthologous sequence - C.neoformans:442 P.vivax:442

Q5KHZ4              	100.00%		A5JZQ5              	100.00%
Bootstrap support for Q5KHZ4 as seed ortholog is 100%.
Bootstrap support for A5JZQ5 as seed ortholog is 100%.

Group of orthologs #143. Best score 441 bits
Score difference with first non-orthologous sequence - C.neoformans:441 P.vivax:441

Q5KLG5              	100.00%		A5K0L6              	100.00%
Bootstrap support for Q5KLG5 as seed ortholog is 100%.
Bootstrap support for A5K0L6 as seed ortholog is 100%.

Group of orthologs #144. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:12

Q5KPW4              	100.00%		A5K9X4              	100.00%
Bootstrap support for Q5KPW4 as seed ortholog is 99%.
Bootstrap support for A5K9X4 as seed ortholog is 62%.
Alternative seed ortholog is A5K1A5 (12 bits away from this cluster)

Group of orthologs #145. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.vivax:271

Q5KII1              	100.00%		A5KCI2              	100.00%
Bootstrap support for Q5KII1 as seed ortholog is 99%.
Bootstrap support for A5KCI2 as seed ortholog is 100%.

Group of orthologs #146. Best score 434 bits
Score difference with first non-orthologous sequence - C.neoformans:434 P.vivax:434

P0CR26              	100.00%		A5K483              	100.00%
Bootstrap support for P0CR26 as seed ortholog is 100%.
Bootstrap support for A5K483 as seed ortholog is 100%.

Group of orthologs #147. Best score 433 bits
Score difference with first non-orthologous sequence - C.neoformans:433 P.vivax:433

Q5KDU2              	100.00%		A5K0V2              	100.00%
Bootstrap support for Q5KDU2 as seed ortholog is 100%.
Bootstrap support for A5K0V2 as seed ortholog is 100%.

Group of orthologs #148. Best score 427 bits
Score difference with first non-orthologous sequence - C.neoformans:427 P.vivax:427

P0CQ22              	100.00%		A5K9I5              	100.00%
Bootstrap support for P0CQ22 as seed ortholog is 100%.
Bootstrap support for A5K9I5 as seed ortholog is 100%.

Group of orthologs #149. Best score 427 bits
Score difference with first non-orthologous sequence - C.neoformans:427 P.vivax:427

Q5KB99              	100.00%		A5KB33              	100.00%
Bootstrap support for Q5KB99 as seed ortholog is 100%.
Bootstrap support for A5KB33 as seed ortholog is 100%.

Group of orthologs #150. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:423 P.vivax:423

Q5KHR6              	100.00%		A5K9Z3              	100.00%
Bootstrap support for Q5KHR6 as seed ortholog is 100%.
Bootstrap support for A5K9Z3 as seed ortholog is 100%.

Group of orthologs #151. Best score 421 bits
Score difference with first non-orthologous sequence - C.neoformans:421 P.vivax:421

Q5KKB8              	100.00%		A5K7U3              	100.00%
Bootstrap support for Q5KKB8 as seed ortholog is 100%.
Bootstrap support for A5K7U3 as seed ortholog is 100%.

Group of orthologs #152. Best score 420 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.vivax:420

Q5KMQ2              	100.00%		A5K7H8              	100.00%
Bootstrap support for Q5KMQ2 as seed ortholog is 100%.
Bootstrap support for A5K7H8 as seed ortholog is 100%.

Group of orthologs #153. Best score 420 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.vivax:420

Q5KKQ6              	100.00%		A5K9U7              	100.00%
Bootstrap support for Q5KKQ6 as seed ortholog is 100%.
Bootstrap support for A5K9U7 as seed ortholog is 100%.

Group of orthologs #154. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.vivax:224

P0CM88              	100.00%		A5K425              	100.00%
                    	       		A5KD85              	86.51%
Bootstrap support for P0CM88 as seed ortholog is 100%.
Bootstrap support for A5K425 as seed ortholog is 99%.

Group of orthologs #155. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.vivax:419

Q5KL32              	100.00%		A5K0U3              	100.00%
                    	       		A5K164              	26.45%
Bootstrap support for Q5KL32 as seed ortholog is 100%.
Bootstrap support for A5K0U3 as seed ortholog is 100%.

Group of orthologs #156. Best score 418 bits
Score difference with first non-orthologous sequence - C.neoformans:418 P.vivax:72

Q5KKV8              	100.00%		A5KDT2              	100.00%
Q5KNS5              	7.93%		
Bootstrap support for Q5KKV8 as seed ortholog is 100%.
Bootstrap support for A5KDT2 as seed ortholog is 96%.

Group of orthologs #157. Best score 416 bits
Score difference with first non-orthologous sequence - C.neoformans:416 P.vivax:416

Q5KGH1              	100.00%		A5K3Q7              	100.00%
Bootstrap support for Q5KGH1 as seed ortholog is 100%.
Bootstrap support for A5K3Q7 as seed ortholog is 100%.

Group of orthologs #158. Best score 415 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.vivax:55

P0CP00              	100.00%		A5K7U0              	100.00%
Bootstrap support for P0CP00 as seed ortholog is 76%.
Bootstrap support for A5K7U0 as seed ortholog is 61%.
Alternative seed ortholog is A5K864 (55 bits away from this cluster)

Group of orthologs #159. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:411 P.vivax:330

Q5KAU8              	100.00%		A5K8L9              	100.00%
Bootstrap support for Q5KAU8 as seed ortholog is 100%.
Bootstrap support for A5K8L9 as seed ortholog is 100%.

Group of orthologs #160. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.vivax:411

Q5KEK9              	100.00%		A5K8T1              	100.00%
Bootstrap support for Q5KEK9 as seed ortholog is 100%.
Bootstrap support for A5K8T1 as seed ortholog is 100%.

Group of orthologs #161. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:411 P.vivax:411

Q5KQ62              	100.00%		A5K8C0              	100.00%
Bootstrap support for Q5KQ62 as seed ortholog is 100%.
Bootstrap support for A5K8C0 as seed ortholog is 100%.

Group of orthologs #162. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:411 P.vivax:411

Q5KQ07              	100.00%		A5K987              	100.00%
Bootstrap support for Q5KQ07 as seed ortholog is 100%.
Bootstrap support for A5K987 as seed ortholog is 100%.

Group of orthologs #163. Best score 410 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.vivax:153

P0CQ74              	100.00%		A5JZS3              	100.00%
Bootstrap support for P0CQ74 as seed ortholog is 100%.
Bootstrap support for A5JZS3 as seed ortholog is 99%.

Group of orthologs #164. Best score 410 bits
Score difference with first non-orthologous sequence - C.neoformans:410 P.vivax:410

P0CO94              	100.00%		A5KDW4              	100.00%
Bootstrap support for P0CO94 as seed ortholog is 100%.
Bootstrap support for A5KDW4 as seed ortholog is 100%.

Group of orthologs #165. Best score 408 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:408

Q5K9A8              	100.00%		A5KAY3              	100.00%
Bootstrap support for Q5K9A8 as seed ortholog is 95%.
Bootstrap support for A5KAY3 as seed ortholog is 100%.

Group of orthologs #166. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.vivax:403

Q5KFJ4              	100.00%		A5K4P4              	100.00%
Bootstrap support for Q5KFJ4 as seed ortholog is 99%.
Bootstrap support for A5K4P4 as seed ortholog is 100%.

Group of orthologs #167. Best score 402 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.vivax:402

Q5K8Q2              	100.00%		A5K1T4              	100.00%
Bootstrap support for Q5K8Q2 as seed ortholog is 100%.
Bootstrap support for A5K1T4 as seed ortholog is 100%.

Group of orthologs #168. Best score 401 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.vivax:193

P0CR00              	100.00%		A5KBU0              	100.00%
Bootstrap support for P0CR00 as seed ortholog is 99%.
Bootstrap support for A5KBU0 as seed ortholog is 100%.

Group of orthologs #169. Best score 401 bits
Score difference with first non-orthologous sequence - C.neoformans:401 P.vivax:401

Q5KAU9              	100.00%		A5K8A9              	100.00%
Bootstrap support for Q5KAU9 as seed ortholog is 100%.
Bootstrap support for A5K8A9 as seed ortholog is 100%.

Group of orthologs #170. Best score 398 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.vivax:54

Q5KP72              	100.00%		A5K6Z6              	100.00%
Q5KGH3              	6.77%		
Bootstrap support for Q5KP72 as seed ortholog is 98%.
Bootstrap support for A5K6Z6 as seed ortholog is 95%.

Group of orthologs #171. Best score 396 bits
Score difference with first non-orthologous sequence - C.neoformans:396 P.vivax:151

P0CQ98              	100.00%		A5KB15              	100.00%
Bootstrap support for P0CQ98 as seed ortholog is 100%.
Bootstrap support for A5KB15 as seed ortholog is 100%.

Group of orthologs #172. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.vivax:394

Q5KI75              	100.00%		A5K5A9              	100.00%
Bootstrap support for Q5KI75 as seed ortholog is 100%.
Bootstrap support for A5K5A9 as seed ortholog is 100%.

Group of orthologs #173. Best score 393 bits
Score difference with first non-orthologous sequence - C.neoformans:393 P.vivax:156

Q5KKG6              	100.00%		A5K2A0              	100.00%
Bootstrap support for Q5KKG6 as seed ortholog is 100%.
Bootstrap support for A5K2A0 as seed ortholog is 99%.

Group of orthologs #174. Best score 390 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.vivax:390

Q5KHJ1              	100.00%		A5K9Y2              	100.00%
Bootstrap support for Q5KHJ1 as seed ortholog is 100%.
Bootstrap support for A5K9Y2 as seed ortholog is 100%.

Group of orthologs #175. Best score 389 bits
Score difference with first non-orthologous sequence - C.neoformans:389 P.vivax:389

Q5KIN6              	100.00%		A5KAD7              	100.00%
Bootstrap support for Q5KIN6 as seed ortholog is 100%.
Bootstrap support for A5KAD7 as seed ortholog is 100%.

Group of orthologs #176. Best score 388 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.vivax:388

Q5KNC3              	100.00%		A5K498              	100.00%
Bootstrap support for Q5KNC3 as seed ortholog is 100%.
Bootstrap support for A5K498 as seed ortholog is 100%.

Group of orthologs #177. Best score 387 bits
Score difference with first non-orthologous sequence - C.neoformans:387 P.vivax:387

Q5K9R3              	100.00%		A5K3L2              	100.00%
Bootstrap support for Q5K9R3 as seed ortholog is 100%.
Bootstrap support for A5K3L2 as seed ortholog is 100%.

Group of orthologs #178. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.vivax:386

Q5K6X3              	100.00%		A5K1W9              	100.00%
Bootstrap support for Q5K6X3 as seed ortholog is 100%.
Bootstrap support for A5K1W9 as seed ortholog is 100%.

Group of orthologs #179. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.vivax:386

Q5KA00              	100.00%		A5K1F4              	100.00%
Bootstrap support for Q5KA00 as seed ortholog is 100%.
Bootstrap support for A5K1F4 as seed ortholog is 100%.

Group of orthologs #180. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.vivax:386

Q5KJY4              	100.00%		A5KC56              	100.00%
Bootstrap support for Q5KJY4 as seed ortholog is 100%.
Bootstrap support for A5KC56 as seed ortholog is 100%.

Group of orthologs #181. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:78

Q5KHS2              	100.00%		A5KBF4              	100.00%
Bootstrap support for Q5KHS2 as seed ortholog is 93%.
Bootstrap support for A5KBF4 as seed ortholog is 98%.

Group of orthologs #182. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.vivax:381

P0CR40              	100.00%		A5K2L7              	100.00%
Bootstrap support for P0CR40 as seed ortholog is 89%.
Bootstrap support for A5K2L7 as seed ortholog is 100%.

Group of orthologs #183. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.vivax:79

Q5KKP2              	100.00%		A5JZ20              	100.00%
Bootstrap support for Q5KKP2 as seed ortholog is 96%.
Bootstrap support for A5JZ20 as seed ortholog is 87%.

Group of orthologs #184. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.vivax:381

Q5KAC2              	100.00%		A5KCI8              	100.00%
Bootstrap support for Q5KAC2 as seed ortholog is 100%.
Bootstrap support for A5KCI8 as seed ortholog is 100%.

Group of orthologs #185. Best score 379 bits
Score difference with first non-orthologous sequence - C.neoformans:379 P.vivax:229

Q5K9A9              	100.00%		A5K1H0              	100.00%
Q5K9L8              	13.68%		
Bootstrap support for Q5K9A9 as seed ortholog is 100%.
Bootstrap support for A5K1H0 as seed ortholog is 100%.

Group of orthologs #186. Best score 379 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.vivax:379

Q5KC30              	100.00%		A5K3I1              	100.00%
Bootstrap support for Q5KC30 as seed ortholog is 100%.
Bootstrap support for A5K3I1 as seed ortholog is 100%.

Group of orthologs #187. Best score 378 bits
Score difference with first non-orthologous sequence - C.neoformans:378 P.vivax:378

Q5KK44              	100.00%		A5KB81              	100.00%
Q5KK43              	58.52%		
Bootstrap support for Q5KK44 as seed ortholog is 100%.
Bootstrap support for A5KB81 as seed ortholog is 100%.

Group of orthologs #188. Best score 377 bits
Score difference with first non-orthologous sequence - C.neoformans:377 P.vivax:377

Q5KQ22              	100.00%		A5K7W4              	100.00%
Bootstrap support for Q5KQ22 as seed ortholog is 100%.
Bootstrap support for A5K7W4 as seed ortholog is 100%.

Group of orthologs #189. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.vivax:374

Q5KJ33              	100.00%		A5K2K0              	100.00%
Bootstrap support for Q5KJ33 as seed ortholog is 100%.
Bootstrap support for A5K2K0 as seed ortholog is 100%.

Group of orthologs #190. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.vivax:373

P0CP26              	100.00%		A5K7A9              	100.00%
Bootstrap support for P0CP26 as seed ortholog is 100%.
Bootstrap support for A5K7A9 as seed ortholog is 100%.

Group of orthologs #191. Best score 372 bits
Score difference with first non-orthologous sequence - C.neoformans:372 P.vivax:372

Q5KN95              	100.00%		A5K0T4              	100.00%
Bootstrap support for Q5KN95 as seed ortholog is 100%.
Bootstrap support for A5K0T4 as seed ortholog is 100%.

Group of orthologs #192. Best score 369 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.vivax:178

P0CQ92              	100.00%		A5K917              	100.00%
Bootstrap support for P0CQ92 as seed ortholog is 99%.
Bootstrap support for A5K917 as seed ortholog is 99%.

Group of orthologs #193. Best score 369 bits
Score difference with first non-orthologous sequence - C.neoformans:369 P.vivax:369

Q5KDP3              	100.00%		A5K3M1              	100.00%
Bootstrap support for Q5KDP3 as seed ortholog is 100%.
Bootstrap support for A5K3M1 as seed ortholog is 100%.

Group of orthologs #194. Best score 368 bits
Score difference with first non-orthologous sequence - C.neoformans:368 P.vivax:368

Q5KIH7              	100.00%		A5K5W0              	100.00%
Bootstrap support for Q5KIH7 as seed ortholog is 100%.
Bootstrap support for A5K5W0 as seed ortholog is 100%.

Group of orthologs #195. Best score 367 bits
Score difference with first non-orthologous sequence - C.neoformans:367 P.vivax:367

Q5K7C3              	100.00%		A5K6Q3              	100.00%
Bootstrap support for Q5K7C3 as seed ortholog is 100%.
Bootstrap support for A5K6Q3 as seed ortholog is 100%.

Group of orthologs #196. Best score 364 bits
Score difference with first non-orthologous sequence - C.neoformans:364 P.vivax:364

P0CS78              	100.00%		A5K2F1              	100.00%
Bootstrap support for P0CS78 as seed ortholog is 100%.
Bootstrap support for A5K2F1 as seed ortholog is 100%.

Group of orthologs #197. Best score 364 bits
Score difference with first non-orthologous sequence - C.neoformans:364 P.vivax:364

Q5KMG4              	100.00%		A5KB30              	100.00%
Bootstrap support for Q5KMG4 as seed ortholog is 100%.
Bootstrap support for A5KB30 as seed ortholog is 100%.

Group of orthologs #198. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:363 P.vivax:363

Q5KLU5              	100.00%		A5K0P0              	100.00%
Bootstrap support for Q5KLU5 as seed ortholog is 100%.
Bootstrap support for A5K0P0 as seed ortholog is 100%.

Group of orthologs #199. Best score 362 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.vivax:362

P0CQ34              	100.00%		A5K2F3              	100.00%
Bootstrap support for P0CQ34 as seed ortholog is 100%.
Bootstrap support for A5K2F3 as seed ortholog is 100%.

Group of orthologs #200. Best score 361 bits
Score difference with first non-orthologous sequence - C.neoformans:361 P.vivax:361

Q5KDT3              	100.00%		A5K0Q4              	100.00%
Bootstrap support for Q5KDT3 as seed ortholog is 100%.
Bootstrap support for A5K0Q4 as seed ortholog is 100%.

Group of orthologs #201. Best score 361 bits
Score difference with first non-orthologous sequence - C.neoformans:361 P.vivax:361

Q5KJI4              	100.00%		A5K9N9              	100.00%
Bootstrap support for Q5KJI4 as seed ortholog is 100%.
Bootstrap support for A5K9N9 as seed ortholog is 100%.

Group of orthologs #202. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.vivax:359

P0CQ66              	100.00%		A5K871              	100.00%
Bootstrap support for P0CQ66 as seed ortholog is 72%.
Alternative seed ortholog is Q5KMN8 (41 bits away from this cluster)
Bootstrap support for A5K871 as seed ortholog is 100%.

Group of orthologs #203. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.vivax:359

Q5KHQ8              	100.00%		A5K107              	100.00%
Bootstrap support for Q5KHQ8 as seed ortholog is 99%.
Bootstrap support for A5K107 as seed ortholog is 100%.

Group of orthologs #204. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.vivax:356

P0CP20              	100.00%		A5K1A2              	100.00%
Bootstrap support for P0CP20 as seed ortholog is 100%.
Bootstrap support for A5K1A2 as seed ortholog is 100%.

Group of orthologs #205. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.vivax:356

Q5KH73              	100.00%		A5K2A9              	100.00%
Bootstrap support for Q5KH73 as seed ortholog is 100%.
Bootstrap support for A5K2A9 as seed ortholog is 100%.

Group of orthologs #206. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.vivax:163

Q5KHN7              	100.00%		A5K8I5              	100.00%
Bootstrap support for Q5KHN7 as seed ortholog is 100%.
Bootstrap support for A5K8I5 as seed ortholog is 99%.

Group of orthologs #207. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.vivax:354

Q5KCJ8              	100.00%		A5K5I4              	100.00%
Bootstrap support for Q5KCJ8 as seed ortholog is 100%.
Bootstrap support for A5K5I4 as seed ortholog is 100%.

Group of orthologs #208. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.vivax:292

Q5KMP3              	100.00%		A5JZJ5              	100.00%
Bootstrap support for Q5KMP3 as seed ortholog is 100%.
Bootstrap support for A5JZJ5 as seed ortholog is 100%.

Group of orthologs #209. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.vivax:159

Q5KKV1              	100.00%		A5K2H6              	100.00%
Bootstrap support for Q5KKV1 as seed ortholog is 91%.
Bootstrap support for A5K2H6 as seed ortholog is 100%.

Group of orthologs #210. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.vivax:354

Q5KKB4              	100.00%		A5KBY3              	100.00%
Bootstrap support for Q5KKB4 as seed ortholog is 100%.
Bootstrap support for A5KBY3 as seed ortholog is 100%.

Group of orthologs #211. Best score 353 bits
Score difference with first non-orthologous sequence - C.neoformans:353 P.vivax:353

Q5KAF2              	100.00%		A5KAZ9              	100.00%
Bootstrap support for Q5KAF2 as seed ortholog is 100%.
Bootstrap support for A5KAZ9 as seed ortholog is 100%.

Group of orthologs #212. Best score 351 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.vivax:351

Q5KLX6              	100.00%		A5KDT7              	100.00%
Bootstrap support for Q5KLX6 as seed ortholog is 100%.
Bootstrap support for A5KDT7 as seed ortholog is 100%.

Group of orthologs #213. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.vivax:109

Q5KMR8              	100.00%		A5KBD7              	100.00%
Bootstrap support for Q5KMR8 as seed ortholog is 99%.
Bootstrap support for A5KBD7 as seed ortholog is 99%.

Group of orthologs #214. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.vivax:346

Q5KJQ2              	100.00%		A5K4G1              	100.00%
Bootstrap support for Q5KJQ2 as seed ortholog is 100%.
Bootstrap support for A5K4G1 as seed ortholog is 100%.

Group of orthologs #215. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.vivax:198

Q5KHS3              	100.00%		A5KAF6              	100.00%
Bootstrap support for Q5KHS3 as seed ortholog is 99%.
Bootstrap support for A5KAF6 as seed ortholog is 99%.

Group of orthologs #216. Best score 345 bits
Score difference with first non-orthologous sequence - C.neoformans:345 P.vivax:345

Q5KII9              	100.00%		A5K8F2              	100.00%
Bootstrap support for Q5KII9 as seed ortholog is 100%.
Bootstrap support for A5K8F2 as seed ortholog is 100%.

Group of orthologs #217. Best score 345 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.vivax:345

Q5KPN7              	100.00%		A5K2T6              	100.00%
Bootstrap support for Q5KPN7 as seed ortholog is 100%.
Bootstrap support for A5K2T6 as seed ortholog is 100%.

Group of orthologs #218. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.vivax:344

Q5K8Z3              	100.00%		A5K9J0              	100.00%
Bootstrap support for Q5K8Z3 as seed ortholog is 100%.
Bootstrap support for A5K9J0 as seed ortholog is 100%.

Group of orthologs #219. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.vivax:344

Q5KEV3              	100.00%		A5KAH7              	100.00%
Bootstrap support for Q5KEV3 as seed ortholog is 100%.
Bootstrap support for A5KAH7 as seed ortholog is 100%.

Group of orthologs #220. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.vivax:344

Q5KDD4              	100.00%		A5KCJ2              	100.00%
Bootstrap support for Q5KDD4 as seed ortholog is 100%.
Bootstrap support for A5KCJ2 as seed ortholog is 100%.

Group of orthologs #221. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.vivax:100

Q5KQ45              	100.00%		A5KE63              	100.00%
                    	       		A5KDE3              	61.17%
                    	       		A5KDM0              	33.09%
Bootstrap support for Q5KQ45 as seed ortholog is 100%.
Bootstrap support for A5KE63 as seed ortholog is 99%.

Group of orthologs #222. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.vivax:79

Q5KH19              	100.00%		A5K138              	100.00%
Bootstrap support for Q5KH19 as seed ortholog is 100%.
Bootstrap support for A5K138 as seed ortholog is 92%.

Group of orthologs #223. Best score 341 bits
Score difference with first non-orthologous sequence - C.neoformans:341 P.vivax:341

P0CS48              	100.00%		A5KB41              	100.00%
Bootstrap support for P0CS48 as seed ortholog is 100%.
Bootstrap support for A5KB41 as seed ortholog is 100%.

Group of orthologs #224. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.vivax:340

Q5KAB8              	100.00%		A5K9S0              	100.00%
Bootstrap support for Q5KAB8 as seed ortholog is 100%.
Bootstrap support for A5K9S0 as seed ortholog is 100%.

Group of orthologs #225. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.vivax:340

Q5KG72              	100.00%		A5K4J1              	100.00%
Bootstrap support for Q5KG72 as seed ortholog is 100%.
Bootstrap support for A5K4J1 as seed ortholog is 100%.

Group of orthologs #226. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.vivax:238

Q5KI17              	100.00%		A5K4J6              	100.00%
Bootstrap support for Q5KI17 as seed ortholog is 100%.
Bootstrap support for A5K4J6 as seed ortholog is 99%.

Group of orthologs #227. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.vivax:340

Q5KIN5              	100.00%		A5KDX3              	100.00%
Bootstrap support for Q5KIN5 as seed ortholog is 100%.
Bootstrap support for A5KDX3 as seed ortholog is 100%.

Group of orthologs #228. Best score 338 bits
Score difference with first non-orthologous sequence - C.neoformans:338 P.vivax:338

Q5K9Z1              	100.00%		A5K247              	100.00%
Bootstrap support for Q5K9Z1 as seed ortholog is 100%.
Bootstrap support for A5K247 as seed ortholog is 100%.

Group of orthologs #229. Best score 337 bits
Score difference with first non-orthologous sequence - C.neoformans:337 P.vivax:337

Q5KAU0              	100.00%		A5K4M9              	100.00%
Bootstrap support for Q5KAU0 as seed ortholog is 100%.
Bootstrap support for A5K4M9 as seed ortholog is 100%.

Group of orthologs #230. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.vivax:291

Q5KHS6              	100.00%		A5K5B7              	100.00%
Bootstrap support for Q5KHS6 as seed ortholog is 100%.
Bootstrap support for A5K5B7 as seed ortholog is 100%.

Group of orthologs #231. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.vivax:334

Q5KED7              	100.00%		A5KEA9              	100.00%
Bootstrap support for Q5KED7 as seed ortholog is 100%.
Bootstrap support for A5KEA9 as seed ortholog is 100%.

Group of orthologs #232. Best score 333 bits
Score difference with first non-orthologous sequence - C.neoformans:333 P.vivax:333

Q5K754              	100.00%		A5KCE9              	100.00%
Bootstrap support for Q5K754 as seed ortholog is 100%.
Bootstrap support for A5KCE9 as seed ortholog is 100%.

Group of orthologs #233. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.vivax:331

P0CQ16              	100.00%		A5K180              	100.00%
Bootstrap support for P0CQ16 as seed ortholog is 100%.
Bootstrap support for A5K180 as seed ortholog is 100%.

Group of orthologs #234. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.vivax:235

Q5KG30              	100.00%		A5KB42              	100.00%
Bootstrap support for Q5KG30 as seed ortholog is 100%.
Bootstrap support for A5KB42 as seed ortholog is 100%.

Group of orthologs #235. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.vivax:330

P0CO58              	100.00%		A5K883              	100.00%
Bootstrap support for P0CO58 as seed ortholog is 100%.
Bootstrap support for A5K883 as seed ortholog is 100%.

Group of orthologs #236. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.vivax:330

Q5KAU7              	100.00%		A5K814              	100.00%
Bootstrap support for Q5KAU7 as seed ortholog is 100%.
Bootstrap support for A5K814 as seed ortholog is 100%.

Group of orthologs #237. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.vivax:328

Q5K749              	100.00%		A5K1Q6              	100.00%
Bootstrap support for Q5K749 as seed ortholog is 100%.
Bootstrap support for A5K1Q6 as seed ortholog is 100%.

Group of orthologs #238. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.vivax:328

Q5K7N9              	100.00%		A5K5U1              	100.00%
Bootstrap support for Q5K7N9 as seed ortholog is 100%.
Bootstrap support for A5K5U1 as seed ortholog is 100%.

Group of orthologs #239. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:327 P.vivax:327

Q5KCX7              	100.00%		A5K3T2              	100.00%
Bootstrap support for Q5KCX7 as seed ortholog is 100%.
Bootstrap support for A5K3T2 as seed ortholog is 100%.

Group of orthologs #240. Best score 325 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:122

Q5KLT3              	100.00%		A5K7H9              	100.00%
Bootstrap support for Q5KLT3 as seed ortholog is 99%.
Bootstrap support for A5K7H9 as seed ortholog is 99%.

Group of orthologs #241. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:324 P.vivax:324

Q5KEV1              	100.00%		A5K3U1              	100.00%
Bootstrap support for Q5KEV1 as seed ortholog is 100%.
Bootstrap support for A5K3U1 as seed ortholog is 100%.

Group of orthologs #242. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.vivax:324

Q5KLZ4              	100.00%		A5K0Y5              	100.00%
Bootstrap support for Q5KLZ4 as seed ortholog is 99%.
Bootstrap support for A5K0Y5 as seed ortholog is 100%.

Group of orthologs #243. Best score 323 bits
Score difference with first non-orthologous sequence - C.neoformans:323 P.vivax:323

Q5KKE9              	100.00%		A5K4C1              	100.00%
Bootstrap support for Q5KKE9 as seed ortholog is 100%.
Bootstrap support for A5K4C1 as seed ortholog is 100%.

Group of orthologs #244. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.vivax:321

Q5KKZ9              	100.00%		A5JZF9              	100.00%
Bootstrap support for Q5KKZ9 as seed ortholog is 100%.
Bootstrap support for A5JZF9 as seed ortholog is 100%.

Group of orthologs #245. Best score 319 bits
Score difference with first non-orthologous sequence - C.neoformans:319 P.vivax:319

Q5KKG9              	100.00%		A5K2S1              	100.00%
Bootstrap support for Q5KKG9 as seed ortholog is 100%.
Bootstrap support for A5K2S1 as seed ortholog is 100%.

Group of orthologs #246. Best score 318 bits
Score difference with first non-orthologous sequence - C.neoformans:318 P.vivax:318

Q5KEG3              	100.00%		A5KB26              	100.00%
Bootstrap support for Q5KEG3 as seed ortholog is 100%.
Bootstrap support for A5KB26 as seed ortholog is 100%.

Group of orthologs #247. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:317 P.vivax:317

Q5KE15              	100.00%		A5K4A8              	100.00%
Bootstrap support for Q5KE15 as seed ortholog is 100%.
Bootstrap support for A5K4A8 as seed ortholog is 100%.

Group of orthologs #248. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.vivax:315

Q5KQ06              	100.00%		A5K0Q7              	100.00%
Bootstrap support for Q5KQ06 as seed ortholog is 100%.
Bootstrap support for A5K0Q7 as seed ortholog is 100%.

Group of orthologs #249. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:315 P.vivax:315

Q5KML3              	100.00%		A5KBW0              	100.00%
Bootstrap support for Q5KML3 as seed ortholog is 100%.
Bootstrap support for A5KBW0 as seed ortholog is 100%.

Group of orthologs #250. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.vivax:185

Q5KP84              	100.00%		A5KE97              	100.00%
Bootstrap support for Q5KP84 as seed ortholog is 99%.
Bootstrap support for A5KE97 as seed ortholog is 100%.

Group of orthologs #251. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.vivax:314

Q5KP83              	100.00%		A5KAX4              	100.00%
Bootstrap support for Q5KP83 as seed ortholog is 100%.
Bootstrap support for A5KAX4 as seed ortholog is 100%.

Group of orthologs #252. Best score 311 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.vivax:311

Q5KH88              	100.00%		A5KCF6              	100.00%
Bootstrap support for Q5KH88 as seed ortholog is 100%.
Bootstrap support for A5KCF6 as seed ortholog is 100%.

Group of orthologs #253. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.vivax:309

Q5KDZ3              	100.00%		A5K003              	100.00%
Bootstrap support for Q5KDZ3 as seed ortholog is 100%.
Bootstrap support for A5K003 as seed ortholog is 100%.

Group of orthologs #254. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.vivax:309

Q5KDK0              	100.00%		A5K9J2              	100.00%
Bootstrap support for Q5KDK0 as seed ortholog is 100%.
Bootstrap support for A5K9J2 as seed ortholog is 100%.

Group of orthologs #255. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.vivax:309

Q5KQ80              	100.00%		A5K1N3              	100.00%
Bootstrap support for Q5KQ80 as seed ortholog is 100%.
Bootstrap support for A5K1N3 as seed ortholog is 100%.

Group of orthologs #256. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.vivax:307

Q5KA97              	100.00%		A5K1A4              	100.00%
Bootstrap support for Q5KA97 as seed ortholog is 100%.
Bootstrap support for A5K1A4 as seed ortholog is 100%.

Group of orthologs #257. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.vivax:307

Q5KHT1              	100.00%		A5K906              	100.00%
Bootstrap support for Q5KHT1 as seed ortholog is 100%.
Bootstrap support for A5K906 as seed ortholog is 100%.

Group of orthologs #258. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.vivax:305

Q5K796              	100.00%		A5K3C4              	100.00%
Bootstrap support for Q5K796 as seed ortholog is 100%.
Bootstrap support for A5K3C4 as seed ortholog is 100%.

Group of orthologs #259. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.vivax:305

Q5KDX5              	100.00%		A5K8S0              	100.00%
Bootstrap support for Q5KDX5 as seed ortholog is 100%.
Bootstrap support for A5K8S0 as seed ortholog is 100%.

Group of orthologs #260. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.vivax:304

Q5KKM6              	100.00%		A5K9Y4              	100.00%
Bootstrap support for Q5KKM6 as seed ortholog is 99%.
Bootstrap support for A5K9Y4 as seed ortholog is 100%.

Group of orthologs #261. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.vivax:302

Q5KPY7              	100.00%		A5K4G2              	100.00%
Q5KKM8              	16.84%		
Bootstrap support for Q5KPY7 as seed ortholog is 100%.
Bootstrap support for A5K4G2 as seed ortholog is 100%.

Group of orthologs #262. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.vivax:302

Q5KAS7              	100.00%		A5K7X4              	100.00%
Bootstrap support for Q5KAS7 as seed ortholog is 100%.
Bootstrap support for A5K7X4 as seed ortholog is 100%.

Group of orthologs #263. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.vivax:302

Q5KMA6              	100.00%		A5K186              	100.00%
Bootstrap support for Q5KMA6 as seed ortholog is 100%.
Bootstrap support for A5K186 as seed ortholog is 100%.

Group of orthologs #264. Best score 301 bits
Score difference with first non-orthologous sequence - C.neoformans:301 P.vivax:301

Q5KK90              	100.00%		A5K464              	100.00%
Bootstrap support for Q5KK90 as seed ortholog is 100%.
Bootstrap support for A5K464 as seed ortholog is 100%.

Group of orthologs #265. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.vivax:215

Q5K8Z6              	100.00%		A5K5S8              	100.00%
Bootstrap support for Q5K8Z6 as seed ortholog is 100%.
Bootstrap support for A5K5S8 as seed ortholog is 100%.

Group of orthologs #266. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.vivax:299

P0CN46              	100.00%		A5K0G2              	100.00%
Bootstrap support for P0CN46 as seed ortholog is 100%.
Bootstrap support for A5K0G2 as seed ortholog is 100%.

Group of orthologs #267. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.vivax:299

P0CO08              	100.00%		A5K8M2              	100.00%
Bootstrap support for P0CO08 as seed ortholog is 100%.
Bootstrap support for A5K8M2 as seed ortholog is 100%.

Group of orthologs #268. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.vivax:122

Q5K7L0              	100.00%		A5KA92              	100.00%
Bootstrap support for Q5K7L0 as seed ortholog is 99%.
Bootstrap support for A5KA92 as seed ortholog is 96%.

Group of orthologs #269. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.vivax:299

Q5KNK2              	100.00%		A5K478              	100.00%
Bootstrap support for Q5KNK2 as seed ortholog is 100%.
Bootstrap support for A5K478 as seed ortholog is 100%.

Group of orthologs #270. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:298 P.vivax:298

Q5KQ94              	100.00%		A5K7H2              	100.00%
Bootstrap support for Q5KQ94 as seed ortholog is 100%.
Bootstrap support for A5K7H2 as seed ortholog is 100%.

Group of orthologs #271. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.vivax:297

P0CR52              	100.00%		A5K1U5              	100.00%
Bootstrap support for P0CR52 as seed ortholog is 100%.
Bootstrap support for A5K1U5 as seed ortholog is 100%.

Group of orthologs #272. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.vivax:297

Q5KHU9              	100.00%		A5KB49              	100.00%
Bootstrap support for Q5KHU9 as seed ortholog is 100%.
Bootstrap support for A5KB49 as seed ortholog is 100%.

Group of orthologs #273. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.vivax:297

Q5KIF1              	100.00%		A5KAX0              	100.00%
Bootstrap support for Q5KIF1 as seed ortholog is 100%.
Bootstrap support for A5KAX0 as seed ortholog is 100%.

Group of orthologs #274. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.vivax:121

Q5KL60              	100.00%		A5K9A7              	100.00%
                    	       		A5K8Q1              	6.69%
Bootstrap support for Q5KL60 as seed ortholog is 56%.
Alternative seed ortholog is Q5KC09 (18 bits away from this cluster)
Bootstrap support for A5K9A7 as seed ortholog is 99%.

Group of orthologs #275. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.vivax:295

Q5KK29              	100.00%		A5K2L6              	100.00%
Bootstrap support for Q5KK29 as seed ortholog is 100%.
Bootstrap support for A5K2L6 as seed ortholog is 100%.

Group of orthologs #276. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.vivax:294

P0CM24              	100.00%		A5K5W9              	100.00%
Bootstrap support for P0CM24 as seed ortholog is 100%.
Bootstrap support for A5K5W9 as seed ortholog is 100%.

Group of orthologs #277. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.vivax:294

Q5KEJ6              	100.00%		A5K4W2              	100.00%
Bootstrap support for Q5KEJ6 as seed ortholog is 100%.
Bootstrap support for A5K4W2 as seed ortholog is 100%.

Group of orthologs #278. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.vivax:294

P0CQ14              	100.00%		A5KDZ1              	100.00%
Bootstrap support for P0CQ14 as seed ortholog is 100%.
Bootstrap support for A5KDZ1 as seed ortholog is 100%.

Group of orthologs #279. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.vivax:291

Q5K7W1              	100.00%		A5KDI9              	100.00%
Q5K7W2              	76.92%		A5KDT4              	75.30%
Bootstrap support for Q5K7W1 as seed ortholog is 100%.
Bootstrap support for A5KDI9 as seed ortholog is 100%.

Group of orthologs #280. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.vivax:98

P0CM16              	100.00%		A5KCF1              	100.00%
Bootstrap support for P0CM16 as seed ortholog is 99%.
Bootstrap support for A5KCF1 as seed ortholog is 100%.

Group of orthologs #281. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:291 P.vivax:291

Q5KNU1              	100.00%		A5K288              	100.00%
Bootstrap support for Q5KNU1 as seed ortholog is 100%.
Bootstrap support for A5K288 as seed ortholog is 100%.

Group of orthologs #282. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.vivax:289

P0CQ60              	100.00%		A5KA82              	100.00%
Bootstrap support for P0CQ60 as seed ortholog is 100%.
Bootstrap support for A5KA82 as seed ortholog is 100%.

Group of orthologs #283. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.vivax:288

P0CN18              	100.00%		A5K191              	100.00%
Bootstrap support for P0CN18 as seed ortholog is 100%.
Bootstrap support for A5K191 as seed ortholog is 100%.

Group of orthologs #284. Best score 287 bits
Score difference with first non-orthologous sequence - C.neoformans:287 P.vivax:287

Q5K9A0              	100.00%		A5K3L5              	100.00%
Q5KEE6              	8.49%		
Bootstrap support for Q5K9A0 as seed ortholog is 100%.
Bootstrap support for A5K3L5 as seed ortholog is 100%.

Group of orthologs #285. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.vivax:204

Q5KGN7              	100.00%		A5K4I9              	100.00%
Bootstrap support for Q5KGN7 as seed ortholog is 100%.
Bootstrap support for A5K4I9 as seed ortholog is 100%.

Group of orthologs #286. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.vivax:285

Q5KIZ9              	100.00%		A5JZM7              	100.00%
Bootstrap support for Q5KIZ9 as seed ortholog is 100%.
Bootstrap support for A5JZM7 as seed ortholog is 100%.

Group of orthologs #287. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.vivax:285

Q5KGK2              	100.00%		A5K4J8              	100.00%
Bootstrap support for Q5KGK2 as seed ortholog is 100%.
Bootstrap support for A5K4J8 as seed ortholog is 100%.

Group of orthologs #288. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.vivax:285

Q5K9N8              	100.00%		A5KBT1              	100.00%
Bootstrap support for Q5K9N8 as seed ortholog is 100%.
Bootstrap support for A5KBT1 as seed ortholog is 100%.

Group of orthologs #289. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.vivax:284

Q5K9S7              	100.00%		A5K8C2              	100.00%
Bootstrap support for Q5K9S7 as seed ortholog is 100%.
Bootstrap support for A5K8C2 as seed ortholog is 100%.

Group of orthologs #290. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.vivax:284

Q5KAB5              	100.00%		A5KBY2              	100.00%
Bootstrap support for Q5KAB5 as seed ortholog is 100%.
Bootstrap support for A5KBY2 as seed ortholog is 100%.

Group of orthologs #291. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.vivax:283

P0CQ58              	100.00%		A5K7J8              	100.00%
Bootstrap support for P0CQ58 as seed ortholog is 100%.
Bootstrap support for A5K7J8 as seed ortholog is 100%.

Group of orthologs #292. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.vivax:283

Q5KLS2              	100.00%		A5K8W2              	100.00%
Bootstrap support for Q5KLS2 as seed ortholog is 100%.
Bootstrap support for A5K8W2 as seed ortholog is 100%.

Group of orthologs #293. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.vivax:191

Q5K6Z8              	100.00%		A5K051              	100.00%
Bootstrap support for Q5K6Z8 as seed ortholog is 100%.
Bootstrap support for A5K051 as seed ortholog is 99%.

Group of orthologs #294. Best score 281 bits
Score difference with first non-orthologous sequence - C.neoformans:281 P.vivax:281

Q5KHS1              	100.00%		A5KBN4              	100.00%
Bootstrap support for Q5KHS1 as seed ortholog is 100%.
Bootstrap support for A5KBN4 as seed ortholog is 100%.

Group of orthologs #295. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:120

Q5KLR7              	100.00%		A5K0M3              	100.00%
Bootstrap support for Q5KLR7 as seed ortholog is 98%.
Bootstrap support for A5K0M3 as seed ortholog is 99%.

Group of orthologs #296. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.vivax:138

Q5KJE3              	100.00%		A5K2G1              	100.00%
Bootstrap support for Q5KJE3 as seed ortholog is 100%.
Bootstrap support for A5K2G1 as seed ortholog is 99%.

Group of orthologs #297. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.vivax:95

Q5KP65              	100.00%		A5K626              	100.00%
Bootstrap support for Q5KP65 as seed ortholog is 96%.
Bootstrap support for A5K626 as seed ortholog is 99%.

Group of orthologs #298. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.vivax:277

Q5KC51              	100.00%		A5KA01              	100.00%
Bootstrap support for Q5KC51 as seed ortholog is 100%.
Bootstrap support for A5KA01 as seed ortholog is 100%.

Group of orthologs #299. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.vivax:277

Q5KQ18              	100.00%		A5K5F9              	100.00%
Bootstrap support for Q5KQ18 as seed ortholog is 100%.
Bootstrap support for A5K5F9 as seed ortholog is 100%.

Group of orthologs #300. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.vivax:275

Q5KPZ1              	100.00%		A5K398              	100.00%
Bootstrap support for Q5KPZ1 as seed ortholog is 100%.
Bootstrap support for A5K398 as seed ortholog is 100%.

Group of orthologs #301. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.vivax:273

Q5KKT0              	100.00%		A5K649              	100.00%
Bootstrap support for Q5KKT0 as seed ortholog is 100%.
Bootstrap support for A5K649 as seed ortholog is 100%.

Group of orthologs #302. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.vivax:272

Q5KHZ2              	100.00%		A5K0B6              	100.00%
Bootstrap support for Q5KHZ2 as seed ortholog is 100%.
Bootstrap support for A5K0B6 as seed ortholog is 100%.

Group of orthologs #303. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.vivax:172

Q5KMR6              	100.00%		A5K7Q1              	100.00%
Bootstrap support for Q5KMR6 as seed ortholog is 97%.
Bootstrap support for A5K7Q1 as seed ortholog is 99%.

Group of orthologs #304. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.vivax:272

Q5KQ43              	100.00%		A5K825              	100.00%
Bootstrap support for Q5KQ43 as seed ortholog is 100%.
Bootstrap support for A5K825 as seed ortholog is 100%.

Group of orthologs #305. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.vivax:270

Q5K8L8              	100.00%		A5K3T1              	100.00%
Bootstrap support for Q5K8L8 as seed ortholog is 100%.
Bootstrap support for A5K3T1 as seed ortholog is 100%.

Group of orthologs #306. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.vivax:270

Q5KMC0              	100.00%		A5K4V5              	100.00%
Bootstrap support for Q5KMC0 as seed ortholog is 100%.
Bootstrap support for A5K4V5 as seed ortholog is 100%.

Group of orthologs #307. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.vivax:269

Q5KDM0              	100.00%		A5JZU2              	100.00%
Bootstrap support for Q5KDM0 as seed ortholog is 100%.
Bootstrap support for A5JZU2 as seed ortholog is 100%.

Group of orthologs #308. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:150

Q5K9V2              	100.00%		A5K6A3              	100.00%
Bootstrap support for Q5K9V2 as seed ortholog is 100%.
Bootstrap support for A5K6A3 as seed ortholog is 100%.

Group of orthologs #309. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.vivax:269

Q5KJD4              	100.00%		A5K5X8              	100.00%
Bootstrap support for Q5KJD4 as seed ortholog is 100%.
Bootstrap support for A5K5X8 as seed ortholog is 100%.

Group of orthologs #310. Best score 268 bits
Score difference with first non-orthologous sequence - C.neoformans:268 P.vivax:268

Q5KGR5              	100.00%		A5JZB6              	100.00%
Bootstrap support for Q5KGR5 as seed ortholog is 100%.
Bootstrap support for A5JZB6 as seed ortholog is 100%.

Group of orthologs #311. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:265 P.vivax:265

P0CQ46              	100.00%		A5K168              	100.00%
Bootstrap support for P0CQ46 as seed ortholog is 100%.
Bootstrap support for A5K168 as seed ortholog is 100%.

Group of orthologs #312. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.vivax:118

Q5K722              	100.00%		A5K6C0              	100.00%
Bootstrap support for Q5K722 as seed ortholog is 100%.
Bootstrap support for A5K6C0 as seed ortholog is 98%.

Group of orthologs #313. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.vivax:262

P0CN44              	100.00%		A5K9I2              	100.00%
Bootstrap support for P0CN44 as seed ortholog is 100%.
Bootstrap support for A5K9I2 as seed ortholog is 100%.

Group of orthologs #314. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.vivax:262

Q5KJU2              	100.00%		A5K0Z7              	100.00%
Bootstrap support for Q5KJU2 as seed ortholog is 100%.
Bootstrap support for A5K0Z7 as seed ortholog is 100%.

Group of orthologs #315. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.vivax:262

Q5KM80              	100.00%		A5K4W6              	100.00%
Bootstrap support for Q5KM80 as seed ortholog is 100%.
Bootstrap support for A5K4W6 as seed ortholog is 100%.

Group of orthologs #316. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.vivax:262

Q5KHA6              	100.00%		A5K9T7              	100.00%
Bootstrap support for Q5KHA6 as seed ortholog is 100%.
Bootstrap support for A5K9T7 as seed ortholog is 100%.

Group of orthologs #317. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.vivax:261

Q5KK64              	100.00%		A5K1N0              	100.00%
Bootstrap support for Q5KK64 as seed ortholog is 100%.
Bootstrap support for A5K1N0 as seed ortholog is 100%.

Group of orthologs #318. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.vivax:260

P0CO88              	100.00%		A5K6H7              	100.00%
Bootstrap support for P0CO88 as seed ortholog is 100%.
Bootstrap support for A5K6H7 as seed ortholog is 100%.

Group of orthologs #319. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.vivax:260

Q5KBY0              	100.00%		A5K490              	100.00%
Bootstrap support for Q5KBY0 as seed ortholog is 87%.
Bootstrap support for A5K490 as seed ortholog is 100%.

Group of orthologs #320. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.vivax:163

P0CS60              	100.00%		A5KAL1              	100.00%
Bootstrap support for P0CS60 as seed ortholog is 100%.
Bootstrap support for A5KAL1 as seed ortholog is 100%.

Group of orthologs #321. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.vivax:259

Q5KP39              	100.00%		A5K3A9              	100.00%
Bootstrap support for Q5KP39 as seed ortholog is 100%.
Bootstrap support for A5K3A9 as seed ortholog is 100%.

Group of orthologs #322. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.vivax:258

Q5KCJ9              	100.00%		A5K7X2              	100.00%
Bootstrap support for Q5KCJ9 as seed ortholog is 100%.
Bootstrap support for A5K7X2 as seed ortholog is 100%.

Group of orthologs #323. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.vivax:258

Q5KNQ1              	100.00%		A5K6T8              	100.00%
Bootstrap support for Q5KNQ1 as seed ortholog is 100%.
Bootstrap support for A5K6T8 as seed ortholog is 100%.

Group of orthologs #324. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:257 P.vivax:257

Q5KBU1              	100.00%		A5KCE5              	100.00%
Bootstrap support for Q5KBU1 as seed ortholog is 100%.
Bootstrap support for A5KCE5 as seed ortholog is 100%.

Group of orthologs #325. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.vivax:256

Q5KDR1              	100.00%		A5K3D9              	100.00%
Bootstrap support for Q5KDR1 as seed ortholog is 100%.
Bootstrap support for A5K3D9 as seed ortholog is 100%.

Group of orthologs #326. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.vivax:256

Q5KPK4              	100.00%		A5K9D6              	100.00%
Bootstrap support for Q5KPK4 as seed ortholog is 100%.
Bootstrap support for A5K9D6 as seed ortholog is 100%.

Group of orthologs #327. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.vivax:255

Q5KGE3              	100.00%		A5K3Z8              	100.00%
Bootstrap support for Q5KGE3 as seed ortholog is 100%.
Bootstrap support for A5K3Z8 as seed ortholog is 100%.

Group of orthologs #328. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.vivax:255

Q5KAZ7              	100.00%		A5KE26              	100.00%
Bootstrap support for Q5KAZ7 as seed ortholog is 100%.
Bootstrap support for A5KE26 as seed ortholog is 100%.

Group of orthologs #329. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.vivax:254

Q5KDY7              	100.00%		A5K1Z2              	100.00%
Bootstrap support for Q5KDY7 as seed ortholog is 100%.
Bootstrap support for A5K1Z2 as seed ortholog is 100%.

Group of orthologs #330. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.vivax:254

Q5KIQ7              	100.00%		A5KCC1              	100.00%
Bootstrap support for Q5KIQ7 as seed ortholog is 100%.
Bootstrap support for A5KCC1 as seed ortholog is 100%.

Group of orthologs #331. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.vivax:111

Q5KDX8              	100.00%		A5K2Y7              	100.00%
Q5KCA3              	15.90%		
Bootstrap support for Q5KDX8 as seed ortholog is 100%.
Bootstrap support for A5K2Y7 as seed ortholog is 99%.

Group of orthologs #332. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.vivax:252

Q5K7X5              	100.00%		A5KBJ3              	100.00%
Q5K826              	55.88%		
Q5KH05              	5.95%		
Bootstrap support for Q5K7X5 as seed ortholog is 100%.
Bootstrap support for A5KBJ3 as seed ortholog is 100%.

Group of orthologs #333. Best score 250 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.vivax:250

Q5KH10              	100.00%		A5K423              	100.00%
Bootstrap support for Q5KH10 as seed ortholog is 100%.
Bootstrap support for A5K423 as seed ortholog is 100%.

Group of orthologs #334. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.vivax:26

Q5KLJ0              	100.00%		A5K1E4              	100.00%
Bootstrap support for Q5KLJ0 as seed ortholog is 100%.
Bootstrap support for A5K1E4 as seed ortholog is 60%.
Alternative seed ortholog is A5K2Z3 (26 bits away from this cluster)

Group of orthologs #335. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.vivax:202

Q5KCK7              	100.00%		A5K9Z5              	100.00%
Bootstrap support for Q5KCK7 as seed ortholog is 100%.
Bootstrap support for A5K9Z5 as seed ortholog is 100%.

Group of orthologs #336. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.vivax:248

P0CR74              	100.00%		A5K3Z6              	100.00%
Bootstrap support for P0CR74 as seed ortholog is 100%.
Bootstrap support for A5K3Z6 as seed ortholog is 100%.

Group of orthologs #337. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:22 P.vivax:27

Q5K8I9              	100.00%		A5K9N1              	100.00%
Bootstrap support for Q5K8I9 as seed ortholog is 87%.
Bootstrap support for A5K9N1 as seed ortholog is 92%.

Group of orthologs #338. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.vivax:248

Q5K947              	100.00%		A5KC61              	100.00%
Bootstrap support for Q5K947 as seed ortholog is 100%.
Bootstrap support for A5KC61 as seed ortholog is 100%.

Group of orthologs #339. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.vivax:248

Q5KFV6              	100.00%		A5KDW0              	100.00%
Bootstrap support for Q5KFV6 as seed ortholog is 100%.
Bootstrap support for A5KDW0 as seed ortholog is 100%.

Group of orthologs #340. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.vivax:246

Q5K9S3              	100.00%		A5K078              	100.00%
Bootstrap support for Q5K9S3 as seed ortholog is 100%.
Bootstrap support for A5K078 as seed ortholog is 100%.

Group of orthologs #341. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.vivax:246

Q5KIJ1              	100.00%		A5K858              	100.00%
Bootstrap support for Q5KIJ1 as seed ortholog is 100%.
Bootstrap support for A5K858 as seed ortholog is 100%.

Group of orthologs #342. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.vivax:245

Q5KIV1              	100.00%		A5K2E8              	100.00%
Bootstrap support for Q5KIV1 as seed ortholog is 100%.
Bootstrap support for A5K2E8 as seed ortholog is 100%.

Group of orthologs #343. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.vivax:245

Q5KM94              	100.00%		A5K574              	100.00%
Bootstrap support for Q5KM94 as seed ortholog is 100%.
Bootstrap support for A5K574 as seed ortholog is 100%.

Group of orthologs #344. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.vivax:245

Q5KKN8              	100.00%		A5KBA1              	100.00%
Bootstrap support for Q5KKN8 as seed ortholog is 99%.
Bootstrap support for A5KBA1 as seed ortholog is 100%.

Group of orthologs #345. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.vivax:125

Q5KF72              	100.00%		A5K0E0              	100.00%
Bootstrap support for Q5KF72 as seed ortholog is 99%.
Bootstrap support for A5K0E0 as seed ortholog is 100%.

Group of orthologs #346. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:124

Q5KJK0              	100.00%		A5K0Q8              	100.00%
Bootstrap support for Q5KJK0 as seed ortholog is 100%.
Bootstrap support for A5K0Q8 as seed ortholog is 100%.

Group of orthologs #347. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.vivax:242

P0CQ56              	100.00%		A5KE24              	100.00%
Bootstrap support for P0CQ56 as seed ortholog is 100%.
Bootstrap support for A5KE24 as seed ortholog is 100%.

Group of orthologs #348. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.vivax:242

Q5KGW0              	100.00%		A5K9F8              	100.00%
Bootstrap support for Q5KGW0 as seed ortholog is 100%.
Bootstrap support for A5K9F8 as seed ortholog is 100%.

Group of orthologs #349. Best score 241 bits
Score difference with first non-orthologous sequence - C.neoformans:241 P.vivax:241

Q5K9Y2              	100.00%		A5K4V3              	100.00%
Bootstrap support for Q5K9Y2 as seed ortholog is 100%.
Bootstrap support for A5K4V3 as seed ortholog is 100%.

Group of orthologs #350. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.vivax:240

Q5KI89              	100.00%		A5K299              	100.00%
Bootstrap support for Q5KI89 as seed ortholog is 100%.
Bootstrap support for A5K299 as seed ortholog is 100%.

Group of orthologs #351. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.vivax:240

Q5KLS0              	100.00%		A5K1T1              	100.00%
Bootstrap support for Q5KLS0 as seed ortholog is 100%.
Bootstrap support for A5K1T1 as seed ortholog is 100%.

Group of orthologs #352. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.vivax:240

Q5KN57              	100.00%		A5K6L8              	100.00%
Bootstrap support for Q5KN57 as seed ortholog is 48%.
Alternative seed ortholog is Q5KEE8 (1 bits away from this cluster)
Bootstrap support for A5K6L8 as seed ortholog is 100%.

Group of orthologs #353. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.vivax:238

Q5KAX6              	100.00%		A5K171              	100.00%
Bootstrap support for Q5KAX6 as seed ortholog is 100%.
Bootstrap support for A5K171 as seed ortholog is 100%.

Group of orthologs #354. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.vivax:238

Q5KBD9              	100.00%		A5K4X7              	100.00%
Bootstrap support for Q5KBD9 as seed ortholog is 100%.
Bootstrap support for A5K4X7 as seed ortholog is 100%.

Group of orthologs #355. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.vivax:237

Q5KL35              	100.00%		A5K091              	100.00%
Q5KED3              	100.00%		A5KCN4              	100.00%
Q5KJN9              	18.67%		
Q5KN23              	16.96%		
Q5KN52              	13.15%		
Q5KE86              	12.87%		
Q5KGP3              	10.83%		
Q5KC65              	9.58%		
Q5KH49              	6.67%		
Bootstrap support for Q5KL35 as seed ortholog is 100%.
Bootstrap support for Q5KED3 as seed ortholog is 100%.
Bootstrap support for A5K091 as seed ortholog is 100%.
Bootstrap support for A5KCN4 as seed ortholog is 100%.

Group of orthologs #356. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.vivax:237

Q5KCY4              	100.00%		A5K264              	100.00%
Bootstrap support for Q5KCY4 as seed ortholog is 100%.
Bootstrap support for A5K264 as seed ortholog is 100%.

Group of orthologs #357. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.vivax:236

Q5KFS1              	100.00%		A5K8N3              	100.00%
Bootstrap support for Q5KFS1 as seed ortholog is 94%.
Bootstrap support for A5K8N3 as seed ortholog is 100%.

Group of orthologs #358. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.vivax:236

Q5KNG0              	100.00%		A5K3V7              	100.00%
Bootstrap support for Q5KNG0 as seed ortholog is 100%.
Bootstrap support for A5K3V7 as seed ortholog is 100%.

Group of orthologs #359. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.vivax:108

P0CO04              	100.00%		A5K1U7              	100.00%
Q5KMT3              	54.84%		A5K215              	64.29%
Bootstrap support for P0CO04 as seed ortholog is 99%.
Bootstrap support for A5K1U7 as seed ortholog is 100%.

Group of orthologs #360. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.vivax:235

Q5KCE8              	100.00%		A5KBU4              	100.00%
Bootstrap support for Q5KCE8 as seed ortholog is 100%.
Bootstrap support for A5KBU4 as seed ortholog is 100%.

Group of orthologs #361. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.vivax:235

Q5KFT0              	100.00%		A5K9J7              	100.00%
Bootstrap support for Q5KFT0 as seed ortholog is 100%.
Bootstrap support for A5K9J7 as seed ortholog is 100%.

Group of orthologs #362. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.vivax:233

Q5KFT4              	100.00%		A5K3C9              	100.00%
Bootstrap support for Q5KFT4 as seed ortholog is 100%.
Bootstrap support for A5K3C9 as seed ortholog is 100%.

Group of orthologs #363. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.vivax:230

P0CO20              	100.00%		A5K127              	100.00%
Bootstrap support for P0CO20 as seed ortholog is 92%.
Bootstrap support for A5K127 as seed ortholog is 100%.

Group of orthologs #364. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.vivax:230

Q5KCX9              	100.00%		A5K533              	100.00%
Bootstrap support for Q5KCX9 as seed ortholog is 100%.
Bootstrap support for A5K533 as seed ortholog is 100%.

Group of orthologs #365. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.vivax:229

Q5K6Y3              	100.00%		A5K0B0              	100.00%
Bootstrap support for Q5K6Y3 as seed ortholog is 100%.
Bootstrap support for A5K0B0 as seed ortholog is 100%.

Group of orthologs #366. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.vivax:229

Q5KKJ4              	100.00%		A5KC50              	100.00%
Bootstrap support for Q5KKJ4 as seed ortholog is 100%.
Bootstrap support for A5KC50 as seed ortholog is 100%.

Group of orthologs #367. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.vivax:228

P0CS34              	100.00%		A5K1G8              	100.00%
Bootstrap support for P0CS34 as seed ortholog is 100%.
Bootstrap support for A5K1G8 as seed ortholog is 100%.

Group of orthologs #368. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.vivax:116

Q5K7H6              	100.00%		A5K5H2              	100.00%
Bootstrap support for Q5K7H6 as seed ortholog is 100%.
Bootstrap support for A5K5H2 as seed ortholog is 99%.

Group of orthologs #369. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.vivax:228

Q5KBS2              	100.00%		A5K8H8              	100.00%
Bootstrap support for Q5KBS2 as seed ortholog is 100%.
Bootstrap support for A5K8H8 as seed ortholog is 100%.

Group of orthologs #370. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.vivax:228

Q5KEZ6              	100.00%		A5K7B4              	100.00%
Bootstrap support for Q5KEZ6 as seed ortholog is 100%.
Bootstrap support for A5K7B4 as seed ortholog is 100%.

Group of orthologs #371. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.vivax:181

Q5KFD9              	100.00%		A5K7D9              	100.00%
Bootstrap support for Q5KFD9 as seed ortholog is 100%.
Bootstrap support for A5K7D9 as seed ortholog is 100%.

Group of orthologs #372. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.vivax:228

Q5KPH3              	100.00%		A5K2J1              	100.00%
Bootstrap support for Q5KPH3 as seed ortholog is 100%.
Bootstrap support for A5K2J1 as seed ortholog is 100%.

Group of orthologs #373. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:112

Q5KKS0              	100.00%		A5KAK2              	100.00%
Bootstrap support for Q5KKS0 as seed ortholog is 99%.
Bootstrap support for A5KAK2 as seed ortholog is 99%.

Group of orthologs #374. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:227

Q5KI80              	100.00%		A5KC04              	100.00%
                    	       		A5KB24              	10.75%
Bootstrap support for Q5KI80 as seed ortholog is 97%.
Bootstrap support for A5KC04 as seed ortholog is 100%.

Group of orthologs #375. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.vivax:227

Q5KC89              	100.00%		A5KCB6              	100.00%
Bootstrap support for Q5KC89 as seed ortholog is 100%.
Bootstrap support for A5KCB6 as seed ortholog is 100%.

Group of orthologs #376. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.vivax:154

Q5KKC2              	100.00%		A5K7T1              	100.00%
Bootstrap support for Q5KKC2 as seed ortholog is 100%.
Bootstrap support for A5K7T1 as seed ortholog is 100%.

Group of orthologs #377. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.vivax:26

P0CS36              	100.00%		A5K0R7              	100.00%
Bootstrap support for P0CS36 as seed ortholog is 100%.
Bootstrap support for A5K0R7 as seed ortholog is 66%.
Alternative seed ortholog is A5K7U2 (26 bits away from this cluster)

Group of orthologs #378. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.vivax:225

Q5KFG2              	100.00%		A5K2E7              	100.00%
Bootstrap support for Q5KFG2 as seed ortholog is 100%.
Bootstrap support for A5K2E7 as seed ortholog is 100%.

Group of orthologs #379. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.vivax:225

Q5KDD6              	100.00%		A5KB86              	100.00%
Bootstrap support for Q5KDD6 as seed ortholog is 100%.
Bootstrap support for A5KB86 as seed ortholog is 100%.

Group of orthologs #380. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.vivax:225

Q5KMT6              	100.00%		A5KC54              	100.00%
Bootstrap support for Q5KMT6 as seed ortholog is 100%.
Bootstrap support for A5KC54 as seed ortholog is 100%.

Group of orthologs #381. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.vivax:131

P0CR30              	100.00%		A5K616              	100.00%
Bootstrap support for P0CR30 as seed ortholog is 100%.
Bootstrap support for A5K616 as seed ortholog is 100%.

Group of orthologs #382. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.vivax:224

Q5K9U9              	100.00%		A5K552              	100.00%
Bootstrap support for Q5K9U9 as seed ortholog is 100%.
Bootstrap support for A5K552 as seed ortholog is 100%.

Group of orthologs #383. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:65

Q5KGZ4              	100.00%		A5JZJ3              	100.00%
Bootstrap support for Q5KGZ4 as seed ortholog is 99%.
Bootstrap support for A5JZJ3 as seed ortholog is 99%.

Group of orthologs #384. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.vivax:224

Q5KA19              	100.00%		A5KC77              	100.00%
Bootstrap support for Q5KA19 as seed ortholog is 100%.
Bootstrap support for A5KC77 as seed ortholog is 100%.

Group of orthologs #385. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.vivax:81

P0CR06              	100.00%		A5K5I2              	100.00%
Bootstrap support for P0CR06 as seed ortholog is 91%.
Bootstrap support for A5K5I2 as seed ortholog is 88%.

Group of orthologs #386. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.vivax:223

Q5KF83              	100.00%		A5K5V9              	100.00%
Bootstrap support for Q5KF83 as seed ortholog is 100%.
Bootstrap support for A5K5V9 as seed ortholog is 100%.

Group of orthologs #387. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.vivax:222

Q5KQ60              	100.00%		A5K6J7              	100.00%
Bootstrap support for Q5KQ60 as seed ortholog is 100%.
Bootstrap support for A5K6J7 as seed ortholog is 100%.

Group of orthologs #388. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:139

P0CP86              	100.00%		A5K4H5              	100.00%
Bootstrap support for P0CP86 as seed ortholog is 100%.
Bootstrap support for A5K4H5 as seed ortholog is 100%.

Group of orthologs #389. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.vivax:219

Q5KMS5              	100.00%		A5K8R2              	100.00%
Bootstrap support for Q5KMS5 as seed ortholog is 100%.
Bootstrap support for A5K8R2 as seed ortholog is 100%.

Group of orthologs #390. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.vivax:218

Q5K9R5              	100.00%		A5K2H9              	100.00%
Bootstrap support for Q5K9R5 as seed ortholog is 100%.
Bootstrap support for A5K2H9 as seed ortholog is 100%.

Group of orthologs #391. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.vivax:90

P0CP82              	100.00%		A5KCH1              	100.00%
Bootstrap support for P0CP82 as seed ortholog is 99%.
Bootstrap support for A5KCH1 as seed ortholog is 99%.

Group of orthologs #392. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.vivax:218

Q5KJ40              	100.00%		A5K0W7              	100.00%
Bootstrap support for Q5KJ40 as seed ortholog is 100%.
Bootstrap support for A5K0W7 as seed ortholog is 100%.

Group of orthologs #393. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.vivax:218

Q5KMA4              	100.00%		A5K523              	100.00%
Bootstrap support for Q5KMA4 as seed ortholog is 100%.
Bootstrap support for A5K523 as seed ortholog is 100%.

Group of orthologs #394. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.vivax:217

Q5KCS1              	100.00%		A5K0Z6              	100.00%
Bootstrap support for Q5KCS1 as seed ortholog is 100%.
Bootstrap support for A5K0Z6 as seed ortholog is 100%.

Group of orthologs #395. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.vivax:215

Q5K772              	100.00%		A5K1K1              	100.00%
Bootstrap support for Q5K772 as seed ortholog is 100%.
Bootstrap support for A5K1K1 as seed ortholog is 100%.

Group of orthologs #396. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.vivax:215

Q5KEN3              	100.00%		A5K0Y3              	100.00%
Bootstrap support for Q5KEN3 as seed ortholog is 100%.
Bootstrap support for A5K0Y3 as seed ortholog is 100%.

Group of orthologs #397. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.vivax:215

Q5KFT1              	100.00%		A5K3R6              	100.00%
Bootstrap support for Q5KFT1 as seed ortholog is 100%.
Bootstrap support for A5K3R6 as seed ortholog is 100%.

Group of orthologs #398. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.vivax:215

Q5KIH5              	100.00%		A5KEC0              	100.00%
Bootstrap support for Q5KIH5 as seed ortholog is 100%.
Bootstrap support for A5KEC0 as seed ortholog is 100%.

Group of orthologs #399. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.vivax:135

P40909              	100.00%		A5K2R4              	100.00%
Bootstrap support for P40909 as seed ortholog is 100%.
Bootstrap support for A5K2R4 as seed ortholog is 100%.

Group of orthologs #400. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.vivax:214

Q5K8I1              	100.00%		A5K3U7              	100.00%
Bootstrap support for Q5K8I1 as seed ortholog is 100%.
Bootstrap support for A5K3U7 as seed ortholog is 100%.

Group of orthologs #401. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:83

Q5K810              	100.00%		A5K5A7              	100.00%
Bootstrap support for Q5K810 as seed ortholog is 100%.
Bootstrap support for A5K5A7 as seed ortholog is 99%.

Group of orthologs #402. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:7 P.vivax:123

Q5KBG0              	100.00%		A5K4F4              	100.00%
Bootstrap support for Q5KBG0 as seed ortholog is 52%.
Alternative seed ortholog is P0CP68 (7 bits away from this cluster)
Bootstrap support for A5K4F4 as seed ortholog is 99%.

Group of orthologs #403. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.vivax:214

Q5KPT7              	100.00%		A5K969              	100.00%
Bootstrap support for Q5KPT7 as seed ortholog is 100%.
Bootstrap support for A5K969 as seed ortholog is 100%.

Group of orthologs #404. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:213

Q5K8T0              	100.00%		A5K136              	100.00%
Bootstrap support for Q5K8T0 as seed ortholog is 100%.
Bootstrap support for A5K136 as seed ortholog is 100%.

Group of orthologs #405. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.vivax:213

P0CR50              	100.00%		A5K8Y4              	100.00%
Bootstrap support for P0CR50 as seed ortholog is 100%.
Bootstrap support for A5K8Y4 as seed ortholog is 100%.

Group of orthologs #406. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.vivax:213

Q5KKX9              	100.00%		A5K0T7              	100.00%
Bootstrap support for Q5KKX9 as seed ortholog is 100%.
Bootstrap support for A5K0T7 as seed ortholog is 100%.

Group of orthologs #407. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.vivax:213

Q5KJC9              	100.00%		A5K9I9              	100.00%
Bootstrap support for Q5KJC9 as seed ortholog is 100%.
Bootstrap support for A5K9I9 as seed ortholog is 100%.

Group of orthologs #408. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:213

Q5KJK3              	100.00%		A5K9H2              	100.00%
Bootstrap support for Q5KJK3 as seed ortholog is 98%.
Bootstrap support for A5K9H2 as seed ortholog is 100%.

Group of orthologs #409. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.vivax:212

Q5K8J5              	100.00%		A5K850              	100.00%
Bootstrap support for Q5K8J5 as seed ortholog is 100%.
Bootstrap support for A5K850 as seed ortholog is 100%.

Group of orthologs #410. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.vivax:100

Q5KG36              	100.00%		A5K411              	100.00%
Bootstrap support for Q5KG36 as seed ortholog is 100%.
Bootstrap support for A5K411 as seed ortholog is 99%.

Group of orthologs #411. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.vivax:211

Q5KJH7              	100.00%		A5K9L6              	100.00%
Bootstrap support for Q5KJH7 as seed ortholog is 100%.
Bootstrap support for A5K9L6 as seed ortholog is 100%.

Group of orthologs #412. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.vivax:210

Q5KJ16              	100.00%		A5K1D0              	100.00%
Bootstrap support for Q5KJ16 as seed ortholog is 100%.
Bootstrap support for A5K1D0 as seed ortholog is 100%.

Group of orthologs #413. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.vivax:210

Q5KKQ9              	100.00%		A5JZT9              	100.00%
Bootstrap support for Q5KKQ9 as seed ortholog is 100%.
Bootstrap support for A5JZT9 as seed ortholog is 100%.

Group of orthologs #414. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.vivax:209

P0CS70              	100.00%		A5K1W6              	100.00%
Bootstrap support for P0CS70 as seed ortholog is 100%.
Bootstrap support for A5K1W6 as seed ortholog is 100%.

Group of orthologs #415. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.vivax:209

Q5KLE7              	100.00%		A5K435              	100.00%
Bootstrap support for Q5KLE7 as seed ortholog is 100%.
Bootstrap support for A5K435 as seed ortholog is 100%.

Group of orthologs #416. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.vivax:208

Q5KII0              	100.00%		A5KE39              	100.00%
Bootstrap support for Q5KII0 as seed ortholog is 100%.
Bootstrap support for A5KE39 as seed ortholog is 100%.

Group of orthologs #417. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.vivax:207

Q5K6V3              	100.00%		A5K6P2              	100.00%
Bootstrap support for Q5K6V3 as seed ortholog is 100%.
Bootstrap support for A5K6P2 as seed ortholog is 100%.

Group of orthologs #418. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.vivax:207

Q5KIA5              	100.00%		A5K057              	100.00%
Bootstrap support for Q5KIA5 as seed ortholog is 100%.
Bootstrap support for A5K057 as seed ortholog is 100%.

Group of orthologs #419. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.vivax:207

Q5KNS1              	100.00%		A5K031              	100.00%
Bootstrap support for Q5KNS1 as seed ortholog is 100%.
Bootstrap support for A5K031 as seed ortholog is 100%.

Group of orthologs #420. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.vivax:207

Q5KLE9              	100.00%		A5KAK5              	100.00%
Bootstrap support for Q5KLE9 as seed ortholog is 100%.
Bootstrap support for A5KAK5 as seed ortholog is 100%.

Group of orthologs #421. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.vivax:206

Q5KBT6              	100.00%		A5K4K6              	100.00%
Bootstrap support for Q5KBT6 as seed ortholog is 100%.
Bootstrap support for A5K4K6 as seed ortholog is 100%.

Group of orthologs #422. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:37

P0CS16              	100.00%		A5JZQ3              	100.00%
Bootstrap support for P0CS16 as seed ortholog is 99%.
Bootstrap support for A5JZQ3 as seed ortholog is 95%.

Group of orthologs #423. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.vivax:104

P0CO42              	100.00%		A5K7B3              	100.00%
Bootstrap support for P0CO42 as seed ortholog is 100%.
Bootstrap support for A5K7B3 as seed ortholog is 99%.

Group of orthologs #424. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.vivax:205

Q5KH62              	100.00%		A5K4W0              	100.00%
Bootstrap support for Q5KH62 as seed ortholog is 100%.
Bootstrap support for A5K4W0 as seed ortholog is 100%.

Group of orthologs #425. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:205

Q5KG73              	100.00%		A5K9C8              	100.00%
Bootstrap support for Q5KG73 as seed ortholog is 99%.
Bootstrap support for A5K9C8 as seed ortholog is 100%.

Group of orthologs #426. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.vivax:103

Q5KGE7              	100.00%		A5K986              	100.00%
Bootstrap support for Q5KGE7 as seed ortholog is 99%.
Bootstrap support for A5K986 as seed ortholog is 100%.

Group of orthologs #427. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.vivax:205

Q5KLF5              	100.00%		A5KCK0              	100.00%
Bootstrap support for Q5KLF5 as seed ortholog is 100%.
Bootstrap support for A5KCK0 as seed ortholog is 100%.

Group of orthologs #428. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.vivax:205

Q5KPQ4              	100.00%		A5KCH7              	100.00%
Bootstrap support for Q5KPQ4 as seed ortholog is 100%.
Bootstrap support for A5KCH7 as seed ortholog is 100%.

Group of orthologs #429. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.vivax:204

Q5KIJ0              	100.00%		A5K2J4              	100.00%
Bootstrap support for Q5KIJ0 as seed ortholog is 100%.
Bootstrap support for A5K2J4 as seed ortholog is 100%.

Group of orthologs #430. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.vivax:203

Q5KL88              	100.00%		A5K545              	100.00%
Bootstrap support for Q5KL88 as seed ortholog is 100%.
Bootstrap support for A5K545 as seed ortholog is 100%.

Group of orthologs #431. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.vivax:155

Q5KGF9              	100.00%		A5K5S6              	100.00%
Bootstrap support for Q5KGF9 as seed ortholog is 100%.
Bootstrap support for A5K5S6 as seed ortholog is 100%.

Group of orthologs #432. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.vivax:202

Q5KKE2              	100.00%		A5KC70              	100.00%
Bootstrap support for Q5KKE2 as seed ortholog is 100%.
Bootstrap support for A5KC70 as seed ortholog is 100%.

Group of orthologs #433. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.vivax:77

Q5KFM4              	100.00%		A5K369              	100.00%
Bootstrap support for Q5KFM4 as seed ortholog is 99%.
Bootstrap support for A5K369 as seed ortholog is 91%.

Group of orthologs #434. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.vivax:201

Q5KIV0              	100.00%		A5K1M3              	100.00%
Bootstrap support for Q5KIV0 as seed ortholog is 99%.
Bootstrap support for A5K1M3 as seed ortholog is 100%.

Group of orthologs #435. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.vivax:201

Q5KG83              	100.00%		A5K4U6              	100.00%
Bootstrap support for Q5KG83 as seed ortholog is 100%.
Bootstrap support for A5K4U6 as seed ortholog is 100%.

Group of orthologs #436. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.vivax:201

Q5KGZ9              	100.00%		A5KE94              	100.00%
Bootstrap support for Q5KGZ9 as seed ortholog is 100%.
Bootstrap support for A5KE94 as seed ortholog is 100%.

Group of orthologs #437. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

P0CR16              	100.00%		A5JZY0              	100.00%
Bootstrap support for P0CR16 as seed ortholog is 100%.
Bootstrap support for A5JZY0 as seed ortholog is 100%.

Group of orthologs #438. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

Q5K7P2              	100.00%		A5K3W6              	100.00%
Bootstrap support for Q5K7P2 as seed ortholog is 100%.
Bootstrap support for A5K3W6 as seed ortholog is 100%.

Group of orthologs #439. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

P0CN48              	100.00%		A5K7A0              	100.00%
Bootstrap support for P0CN48 as seed ortholog is 100%.
Bootstrap support for A5K7A0 as seed ortholog is 100%.

Group of orthologs #440. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

Q5KA46              	100.00%		A5K4S2              	100.00%
Bootstrap support for Q5KA46 as seed ortholog is 100%.
Bootstrap support for A5K4S2 as seed ortholog is 100%.

Group of orthologs #441. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

Q5KQ20              	100.00%		A5JZI1              	100.00%
Bootstrap support for Q5KQ20 as seed ortholog is 100%.
Bootstrap support for A5JZI1 as seed ortholog is 100%.

Group of orthologs #442. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

Q5KFC5              	100.00%		A5KBI5              	100.00%
Bootstrap support for Q5KFC5 as seed ortholog is 100%.
Bootstrap support for A5KBI5 as seed ortholog is 100%.

Group of orthologs #443. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.vivax:200

Q5KPX1              	100.00%		A5KBJ7              	100.00%
Bootstrap support for Q5KPX1 as seed ortholog is 100%.
Bootstrap support for A5KBJ7 as seed ortholog is 100%.

Group of orthologs #444. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.vivax:40

Q5KGS1              	100.00%		A5K0B2              	100.00%
Bootstrap support for Q5KGS1 as seed ortholog is 72%.
Alternative seed ortholog is Q5KJ96 (18 bits away from this cluster)
Bootstrap support for A5K0B2 as seed ortholog is 96%.

Group of orthologs #445. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:199 P.vivax:199

Q5KGP1              	100.00%		A5K956              	100.00%
Bootstrap support for Q5KGP1 as seed ortholog is 100%.
Bootstrap support for A5K956 as seed ortholog is 100%.

Group of orthologs #446. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:55

Q5K7V8              	100.00%		A5K451              	100.00%
                    	       		A5KBZ1              	43.33%
                    	       		A5KA29              	28.25%
Bootstrap support for Q5K7V8 as seed ortholog is 71%.
Alternative seed ortholog is Q5K913 (69 bits away from this cluster)
Bootstrap support for A5K451 as seed ortholog is 96%.

Group of orthologs #447. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.vivax:198

Q5KBW9              	100.00%		A5K1Y3              	100.00%
Bootstrap support for Q5KBW9 as seed ortholog is 100%.
Bootstrap support for A5K1Y3 as seed ortholog is 100%.

Group of orthologs #448. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.vivax:21

Q5KB17              	100.00%		A5K822              	100.00%
Bootstrap support for Q5KB17 as seed ortholog is 100%.
Bootstrap support for A5K822 as seed ortholog is 74%.
Alternative seed ortholog is A5K101 (21 bits away from this cluster)

Group of orthologs #449. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.vivax:198

Q5KIY3              	100.00%		A5K6U6              	100.00%
Bootstrap support for Q5KIY3 as seed ortholog is 93%.
Bootstrap support for A5K6U6 as seed ortholog is 100%.

Group of orthologs #450. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:96

Q5KBK7              	100.00%		A5K6L9              	100.00%
Bootstrap support for Q5KBK7 as seed ortholog is 100%.
Bootstrap support for A5K6L9 as seed ortholog is 99%.

Group of orthologs #451. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.vivax:56

Q5KMM0              	100.00%		A5K7K7              	100.00%
Q5KML4              	56.65%		A5KDH9              	100.00%
Bootstrap support for Q5KMM0 as seed ortholog is 79%.
Bootstrap support for A5K7K7 as seed ortholog is 98%.
Bootstrap support for A5KDH9 as seed ortholog is 98%.

Group of orthologs #452. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:111

P0CP84              	100.00%		A5K972              	100.00%
Bootstrap support for P0CP84 as seed ortholog is 99%.
Bootstrap support for A5K972 as seed ortholog is 100%.

Group of orthologs #453. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:139

Q5K959              	100.00%		A5K7W5              	100.00%
Bootstrap support for Q5K959 as seed ortholog is 100%.
Bootstrap support for A5K7W5 as seed ortholog is 100%.

Group of orthologs #454. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.vivax:195

Q5KJG7              	100.00%		A5K1N5              	100.00%
Bootstrap support for Q5KJG7 as seed ortholog is 100%.
Bootstrap support for A5K1N5 as seed ortholog is 100%.

Group of orthologs #455. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.vivax:195

Q5KJ55              	100.00%		A5K3F9              	100.00%
Bootstrap support for Q5KJ55 as seed ortholog is 100%.
Bootstrap support for A5K3F9 as seed ortholog is 100%.

Group of orthologs #456. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:195

Q5KP95              	100.00%		A5K9T5              	100.00%
Bootstrap support for Q5KP95 as seed ortholog is 100%.
Bootstrap support for A5K9T5 as seed ortholog is 100%.

Group of orthologs #457. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.vivax:132

Q5KNI6              	100.00%		A5KB88              	100.00%
Bootstrap support for Q5KNI6 as seed ortholog is 100%.
Bootstrap support for A5KB88 as seed ortholog is 100%.

Group of orthologs #458. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.vivax:26

Q5KMG1              	100.00%		A5KB43              	100.00%
Q5K8R8              	34.84%		
Bootstrap support for Q5KMG1 as seed ortholog is 74%.
Alternative seed ortholog is P0CL92 (28 bits away from this cluster)
Bootstrap support for A5KB43 as seed ortholog is 55%.
Alternative seed ortholog is A5K0J7 (26 bits away from this cluster)

Group of orthologs #459. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.vivax:194

P0CN42              	100.00%		A5JZU1              	100.00%
Bootstrap support for P0CN42 as seed ortholog is 100%.
Bootstrap support for A5JZU1 as seed ortholog is 100%.

Group of orthologs #460. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.vivax:27

Q5KCH7              	100.00%		A5KBU9              	100.00%
                    	       		A5KAF8              	35.97%
Bootstrap support for Q5KCH7 as seed ortholog is 98%.
Bootstrap support for A5KBU9 as seed ortholog is 82%.

Group of orthologs #461. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.vivax:193

P0CO46              	100.00%		A5K364              	100.00%
Bootstrap support for P0CO46 as seed ortholog is 100%.
Bootstrap support for A5K364 as seed ortholog is 100%.

Group of orthologs #462. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:31 P.vivax:60

P0CP78              	100.00%		A5K4H1              	100.00%
Bootstrap support for P0CP78 as seed ortholog is 87%.
Bootstrap support for A5K4H1 as seed ortholog is 98%.

Group of orthologs #463. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.vivax:193

Q5K8H5              	100.00%		A5K474              	100.00%
Bootstrap support for Q5K8H5 as seed ortholog is 100%.
Bootstrap support for A5K474 as seed ortholog is 100%.

Group of orthologs #464. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.vivax:193

P0CR56              	100.00%		A5KBT7              	100.00%
Bootstrap support for P0CR56 as seed ortholog is 100%.
Bootstrap support for A5KBT7 as seed ortholog is 100%.

Group of orthologs #465. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:39 P.vivax:62

P0CQ94              	100.00%		A5KC62              	100.00%
Bootstrap support for P0CQ94 as seed ortholog is 90%.
Bootstrap support for A5KC62 as seed ortholog is 86%.

Group of orthologs #466. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.vivax:193

Q5KC90              	100.00%		A5KDT9              	100.00%
Bootstrap support for Q5KC90 as seed ortholog is 100%.
Bootstrap support for A5KDT9 as seed ortholog is 100%.

Group of orthologs #467. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.vivax:193

Q5KH50              	100.00%		A5K9Q1              	100.00%
Bootstrap support for Q5KH50 as seed ortholog is 100%.
Bootstrap support for A5K9Q1 as seed ortholog is 100%.

Group of orthologs #468. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.vivax:94

Q5K8Q5              	100.00%		A5K2E5              	100.00%
Bootstrap support for Q5K8Q5 as seed ortholog is 100%.
Bootstrap support for A5K2E5 as seed ortholog is 99%.

Group of orthologs #469. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.vivax:192

Q5KDJ7              	100.00%		A5K1E3              	100.00%
Bootstrap support for Q5KDJ7 as seed ortholog is 100%.
Bootstrap support for A5K1E3 as seed ortholog is 100%.

Group of orthologs #470. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.vivax:192

Q5K7I5              	100.00%		A5K762              	100.00%
Bootstrap support for Q5K7I5 as seed ortholog is 100%.
Bootstrap support for A5K762 as seed ortholog is 100%.

Group of orthologs #471. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.vivax:71

Q5KGB2              	100.00%		A5K4J4              	100.00%
Bootstrap support for Q5KGB2 as seed ortholog is 98%.
Bootstrap support for A5K4J4 as seed ortholog is 99%.

Group of orthologs #472. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.vivax:92

Q5KH66              	100.00%		A5K5R1              	100.00%
Bootstrap support for Q5KH66 as seed ortholog is 100%.
Bootstrap support for A5K5R1 as seed ortholog is 99%.

Group of orthologs #473. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.vivax:191

P0CP58              	100.00%		A5K4A1              	100.00%
Bootstrap support for P0CP58 as seed ortholog is 100%.
Bootstrap support for A5K4A1 as seed ortholog is 100%.

Group of orthologs #474. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.vivax:191

Q5KBR5              	100.00%		A5JZD8              	100.00%
Bootstrap support for Q5KBR5 as seed ortholog is 100%.
Bootstrap support for A5JZD8 as seed ortholog is 100%.

Group of orthologs #475. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.vivax:191

Q5KEH0              	100.00%		A5K6D6              	100.00%
Bootstrap support for Q5KEH0 as seed ortholog is 100%.
Bootstrap support for A5K6D6 as seed ortholog is 100%.

Group of orthologs #476. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.vivax:191

Q5KHI3              	100.00%		A5K4P8              	100.00%
Bootstrap support for Q5KHI3 as seed ortholog is 100%.
Bootstrap support for A5K4P8 as seed ortholog is 100%.

Group of orthologs #477. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.vivax:191

Q5KNB0              	100.00%		A5K330              	100.00%
Bootstrap support for Q5KNB0 as seed ortholog is 100%.
Bootstrap support for A5K330 as seed ortholog is 100%.

Group of orthologs #478. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.vivax:190

Q5KD50              	100.00%		A5K914              	100.00%
Bootstrap support for Q5KD50 as seed ortholog is 100%.
Bootstrap support for A5K914 as seed ortholog is 100%.

Group of orthologs #479. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.vivax:190

Q5KMY7              	100.00%		A5K1S0              	100.00%
Bootstrap support for Q5KMY7 as seed ortholog is 100%.
Bootstrap support for A5K1S0 as seed ortholog is 100%.

Group of orthologs #480. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.vivax:189

Q5KLL4              	100.00%		A5KAD0              	100.00%
Bootstrap support for Q5KLL4 as seed ortholog is 100%.
Bootstrap support for A5KAD0 as seed ortholog is 100%.

Group of orthologs #481. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.vivax:34

Q5KAW6              	100.00%		A5JZ65              	100.00%
Q5KG21              	100.00%		
Bootstrap support for Q5KAW6 as seed ortholog is 92%.
Bootstrap support for Q5KG21 as seed ortholog is 93%.
Bootstrap support for A5JZ65 as seed ortholog is 75%.

Group of orthologs #482. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.vivax:188

Q5K7Z7              	100.00%		A5K0Q0              	100.00%
Bootstrap support for Q5K7Z7 as seed ortholog is 100%.
Bootstrap support for A5K0Q0 as seed ortholog is 100%.

Group of orthologs #483. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.vivax:188

Q5KBH4              	100.00%		A5K273              	100.00%
Bootstrap support for Q5KBH4 as seed ortholog is 100%.
Bootstrap support for A5K273 as seed ortholog is 100%.

Group of orthologs #484. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.vivax:188

Q5KP54              	100.00%		A5K1E0              	100.00%
Bootstrap support for Q5KP54 as seed ortholog is 98%.
Bootstrap support for A5K1E0 as seed ortholog is 100%.

Group of orthologs #485. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.vivax:188

Q5KAU2              	100.00%		A5KDW1              	100.00%
Bootstrap support for Q5KAU2 as seed ortholog is 100%.
Bootstrap support for A5KDW1 as seed ortholog is 100%.

Group of orthologs #486. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.vivax:187

Q5KM78              	100.00%		A5K274              	100.00%
Q5KCL1              	13.41%		
Bootstrap support for Q5KM78 as seed ortholog is 100%.
Bootstrap support for A5K274 as seed ortholog is 100%.

Group of orthologs #487. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.vivax:186

Q5KJV0              	100.00%		A5K3P9              	100.00%
Q5KNW6              	8.14%		
Bootstrap support for Q5KJV0 as seed ortholog is 100%.
Bootstrap support for A5K3P9 as seed ortholog is 100%.

Group of orthologs #488. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:26

Q5KNQ9              	100.00%		A5K1E7              	100.00%
Bootstrap support for Q5KNQ9 as seed ortholog is 97%.
Bootstrap support for A5K1E7 as seed ortholog is 77%.

Group of orthologs #489. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:33

Q5KI66              	100.00%		A5KBA7              	100.00%
Bootstrap support for Q5KI66 as seed ortholog is 97%.
Bootstrap support for A5KBA7 as seed ortholog is 83%.

Group of orthologs #490. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.vivax:185

Q5K9Y4              	100.00%		A5K7L5              	100.00%
Bootstrap support for Q5K9Y4 as seed ortholog is 100%.
Bootstrap support for A5K7L5 as seed ortholog is 100%.

Group of orthologs #491. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.vivax:185

Q5KIZ3              	100.00%		A5KC28              	100.00%
Bootstrap support for Q5KIZ3 as seed ortholog is 100%.
Bootstrap support for A5KC28 as seed ortholog is 100%.

Group of orthologs #492. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.vivax:184

Q5K8A1              	100.00%		A5K1X6              	100.00%
Bootstrap support for Q5K8A1 as seed ortholog is 100%.
Bootstrap support for A5K1X6 as seed ortholog is 100%.

Group of orthologs #493. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.vivax:184

Q5KND4              	100.00%		A5K179              	100.00%
Bootstrap support for Q5KND4 as seed ortholog is 100%.
Bootstrap support for A5K179 as seed ortholog is 100%.

Group of orthologs #494. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.vivax:57

Q5KD12              	100.00%		A5KE15              	100.00%
                    	       		A5K9U4              	18.71%
Bootstrap support for Q5KD12 as seed ortholog is 100%.
Bootstrap support for A5KE15 as seed ortholog is 99%.

Group of orthologs #495. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.vivax:183

P0CS50              	100.00%		A5K0A8              	100.00%
Bootstrap support for P0CS50 as seed ortholog is 99%.
Bootstrap support for A5K0A8 as seed ortholog is 100%.

Group of orthologs #496. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.vivax:183

Q5KNH2              	100.00%		A5K7Q0              	100.00%
Bootstrap support for Q5KNH2 as seed ortholog is 100%.
Bootstrap support for A5K7Q0 as seed ortholog is 100%.

Group of orthologs #497. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.vivax:182

Q5K7Y1              	100.00%		A5K2F0              	100.00%
Bootstrap support for Q5K7Y1 as seed ortholog is 57%.
Alternative seed ortholog is Q5K7Z5 (17 bits away from this cluster)
Bootstrap support for A5K2F0 as seed ortholog is 100%.

Group of orthologs #498. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.vivax:75

Q5KI85              	100.00%		A5K257              	100.00%
Bootstrap support for Q5KI85 as seed ortholog is 100%.
Bootstrap support for A5K257 as seed ortholog is 93%.

Group of orthologs #499. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.vivax:182

Q5KIN9              	100.00%		A5K235              	100.00%
Bootstrap support for Q5KIN9 as seed ortholog is 100%.
Bootstrap support for A5K235 as seed ortholog is 100%.

Group of orthologs #500. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.vivax:182

Q5KGU5              	100.00%		A5K416              	100.00%
Bootstrap support for Q5KGU5 as seed ortholog is 100%.
Bootstrap support for A5K416 as seed ortholog is 100%.

Group of orthologs #501. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.vivax:182

Q5KF53              	100.00%		A5KCC8              	100.00%
Bootstrap support for Q5KF53 as seed ortholog is 100%.
Bootstrap support for A5KCC8 as seed ortholog is 100%.

Group of orthologs #502. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.vivax:181

Q5KM68              	100.00%		A5JZP0              	100.00%
Bootstrap support for Q5KM68 as seed ortholog is 100%.
Bootstrap support for A5JZP0 as seed ortholog is 100%.

Group of orthologs #503. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.vivax:180

Q5K8Y6              	100.00%		A5K9D1              	100.00%
Bootstrap support for Q5K8Y6 as seed ortholog is 100%.
Bootstrap support for A5K9D1 as seed ortholog is 100%.

Group of orthologs #504. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.vivax:180

Q5KBD0              	100.00%		A5KB55              	100.00%
Bootstrap support for Q5KBD0 as seed ortholog is 100%.
Bootstrap support for A5KB55 as seed ortholog is 100%.

Group of orthologs #505. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.vivax:179

Q5K8H7              	100.00%		A5K382              	100.00%
Bootstrap support for Q5K8H7 as seed ortholog is 100%.
Bootstrap support for A5K382 as seed ortholog is 100%.

Group of orthologs #506. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.vivax:179

Q5KCE0              	100.00%		A5K3I6              	100.00%
Bootstrap support for Q5KCE0 as seed ortholog is 100%.
Bootstrap support for A5K3I6 as seed ortholog is 100%.

Group of orthologs #507. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.vivax:95

Q5KPI4              	100.00%		A5K9G6              	100.00%
Q5K938              	14.58%		
Bootstrap support for Q5KPI4 as seed ortholog is 100%.
Bootstrap support for A5K9G6 as seed ortholog is 100%.

Group of orthologs #508. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.vivax:178

Q5KMA0              	100.00%		A5K219              	100.00%
Bootstrap support for Q5KMA0 as seed ortholog is 100%.
Bootstrap support for A5K219 as seed ortholog is 100%.

Group of orthologs #509. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.vivax:178

Q5KLQ5              	100.00%		A5K4C7              	100.00%
Bootstrap support for Q5KLQ5 as seed ortholog is 100%.
Bootstrap support for A5K4C7 as seed ortholog is 100%.

Group of orthologs #510. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.vivax:178

Q5KQ70              	100.00%		A5K306              	100.00%
Bootstrap support for Q5KQ70 as seed ortholog is 100%.
Bootstrap support for A5K306 as seed ortholog is 100%.

Group of orthologs #511. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.vivax:177

P0CN56              	100.00%		A5K1W2              	100.00%
Bootstrap support for P0CN56 as seed ortholog is 100%.
Bootstrap support for A5K1W2 as seed ortholog is 100%.

Group of orthologs #512. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.vivax:176

Q5KE64              	100.00%		A5K859              	100.00%
Q5KIK6              	100.00%		
Q5K7P0              	46.40%		
Bootstrap support for Q5KE64 as seed ortholog is 76%.
Bootstrap support for Q5KIK6 as seed ortholog is 79%.
Bootstrap support for A5K859 as seed ortholog is 100%.

Group of orthologs #513. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.vivax:176

P0CN94              	100.00%		A5K8D5              	100.00%
Bootstrap support for P0CN94 as seed ortholog is 100%.
Bootstrap support for A5K8D5 as seed ortholog is 100%.

Group of orthologs #514. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.vivax:176

Q5K979              	100.00%		A5K7Q8              	100.00%
Bootstrap support for Q5K979 as seed ortholog is 100%.
Bootstrap support for A5K7Q8 as seed ortholog is 100%.

Group of orthologs #515. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.vivax:176

Q5KHT0              	100.00%		A5K0E4              	100.00%
Bootstrap support for Q5KHT0 as seed ortholog is 100%.
Bootstrap support for A5K0E4 as seed ortholog is 100%.

Group of orthologs #516. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.vivax:176

Q5KGR6              	100.00%		A5K2S0              	100.00%
Bootstrap support for Q5KGR6 as seed ortholog is 84%.
Bootstrap support for A5K2S0 as seed ortholog is 100%.

Group of orthologs #517. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.vivax:176

Q5KIC5              	100.00%		A5K852              	100.00%
Bootstrap support for Q5KIC5 as seed ortholog is 100%.
Bootstrap support for A5K852 as seed ortholog is 100%.

Group of orthologs #518. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:29

Q5KPY0              	100.00%		A5KBB4              	100.00%
Bootstrap support for Q5KPY0 as seed ortholog is 98%.
Bootstrap support for A5KBB4 as seed ortholog is 67%.
Alternative seed ortholog is A5K8Q2 (29 bits away from this cluster)

Group of orthologs #519. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.vivax:175

P0CQ02              	100.00%		A5K0U9              	100.00%
Bootstrap support for P0CQ02 as seed ortholog is 95%.
Bootstrap support for A5K0U9 as seed ortholog is 100%.

Group of orthologs #520. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.vivax:175

P0CP92              	100.00%		A5K105              	100.00%
Bootstrap support for P0CP92 as seed ortholog is 99%.
Bootstrap support for A5K105 as seed ortholog is 100%.

Group of orthologs #521. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.vivax:175

Q5KK62              	100.00%		A5K1N1              	100.00%
Bootstrap support for Q5KK62 as seed ortholog is 100%.
Bootstrap support for A5K1N1 as seed ortholog is 100%.

Group of orthologs #522. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.vivax:99

Q5KK40              	100.00%		A5K2R0              	100.00%
Bootstrap support for Q5KK40 as seed ortholog is 100%.
Bootstrap support for A5K2R0 as seed ortholog is 98%.

Group of orthologs #523. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.vivax:73

Q5KIG6              	100.00%		A5K591              	100.00%
Bootstrap support for Q5KIG6 as seed ortholog is 98%.
Bootstrap support for A5K591 as seed ortholog is 98%.

Group of orthologs #524. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.vivax:174

Q5KH61              	100.00%		A5K624              	100.00%
Bootstrap support for Q5KH61 as seed ortholog is 100%.
Bootstrap support for A5K624 as seed ortholog is 100%.

Group of orthologs #525. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.vivax:173

P0CR70              	100.00%		A5K1V0              	100.00%
Bootstrap support for P0CR70 as seed ortholog is 100%.
Bootstrap support for A5K1V0 as seed ortholog is 100%.

Group of orthologs #526. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.vivax:173

P0CO00              	100.00%		A5K7L8              	100.00%
Bootstrap support for P0CO00 as seed ortholog is 100%.
Bootstrap support for A5K7L8 as seed ortholog is 100%.

Group of orthologs #527. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.vivax:173

Q5K9K4              	100.00%		A5K8V0              	100.00%
Bootstrap support for Q5K9K4 as seed ortholog is 100%.
Bootstrap support for A5K8V0 as seed ortholog is 100%.

Group of orthologs #528. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.vivax:173

Q5KAI5              	100.00%		A5K851              	100.00%
Bootstrap support for Q5KAI5 as seed ortholog is 100%.
Bootstrap support for A5K851 as seed ortholog is 100%.

Group of orthologs #529. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.vivax:173

Q5KK16              	100.00%		A5K5P7              	100.00%
Bootstrap support for Q5KK16 as seed ortholog is 100%.
Bootstrap support for A5K5P7 as seed ortholog is 100%.

Group of orthologs #530. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.vivax:172

Q5KCI8              	100.00%		A5K592              	100.00%
Bootstrap support for Q5KCI8 as seed ortholog is 100%.
Bootstrap support for A5K592 as seed ortholog is 100%.

Group of orthologs #531. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.vivax:114

Q5KBA9              	100.00%		A5K7N2              	100.00%
Bootstrap support for Q5KBA9 as seed ortholog is 100%.
Bootstrap support for A5K7N2 as seed ortholog is 100%.

Group of orthologs #532. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.vivax:25

P0CR04              	100.00%		A5KCF7              	100.00%
Bootstrap support for P0CR04 as seed ortholog is 86%.
Bootstrap support for A5KCF7 as seed ortholog is 69%.
Alternative seed ortholog is A5K071 (25 bits away from this cluster)

Group of orthologs #533. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.vivax:172

Q5KPW7              	100.00%		A5K0H1              	100.00%
Bootstrap support for Q5KPW7 as seed ortholog is 100%.
Bootstrap support for A5K0H1 as seed ortholog is 100%.

Group of orthologs #534. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.vivax:171

Q5K6V5              	100.00%		A5K5X2              	100.00%
Bootstrap support for Q5K6V5 as seed ortholog is 100%.
Bootstrap support for A5K5X2 as seed ortholog is 100%.

Group of orthologs #535. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.vivax:171

Q5KNF9              	100.00%		A5K001              	100.00%
Bootstrap support for Q5KNF9 as seed ortholog is 100%.
Bootstrap support for A5K001 as seed ortholog is 100%.

Group of orthologs #536. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.vivax:171

Q5KQ17              	100.00%		A5KAJ3              	100.00%
Bootstrap support for Q5KQ17 as seed ortholog is 100%.
Bootstrap support for A5KAJ3 as seed ortholog is 100%.

Group of orthologs #537. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.vivax:170

P0CN98              	100.00%		A5K214              	100.00%
Bootstrap support for P0CN98 as seed ortholog is 100%.
Bootstrap support for A5K214 as seed ortholog is 100%.

Group of orthologs #538. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.vivax:170

P0CM34              	100.00%		A5K6C7              	100.00%
Bootstrap support for P0CM34 as seed ortholog is 100%.
Bootstrap support for A5K6C7 as seed ortholog is 100%.

Group of orthologs #539. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.vivax:170

Q5KAH0              	100.00%		A5K6H8              	100.00%
Bootstrap support for Q5KAH0 as seed ortholog is 100%.
Bootstrap support for A5K6H8 as seed ortholog is 100%.

Group of orthologs #540. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.vivax:59

Q5KIL7              	100.00%		A5KAN2              	100.00%
Bootstrap support for Q5KIL7 as seed ortholog is 100%.
Bootstrap support for A5KAN2 as seed ortholog is 96%.

Group of orthologs #541. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.vivax:169

Q5KLQ4              	100.00%		A5JZL7              	100.00%
Q5KLR2              	53.91%		
Bootstrap support for Q5KLQ4 as seed ortholog is 99%.
Bootstrap support for A5JZL7 as seed ortholog is 100%.

Group of orthologs #542. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.vivax:169

P0CO44              	100.00%		A5K270              	100.00%
Bootstrap support for P0CO44 as seed ortholog is 100%.
Bootstrap support for A5K270 as seed ortholog is 100%.

Group of orthologs #543. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.vivax:169

Q5KAX8              	100.00%		A5K3E3              	100.00%
Bootstrap support for Q5KAX8 as seed ortholog is 100%.
Bootstrap support for A5K3E3 as seed ortholog is 100%.

Group of orthologs #544. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.vivax:169

Q5KHX7              	100.00%		A5K609              	100.00%
Bootstrap support for Q5KHX7 as seed ortholog is 100%.
Bootstrap support for A5K609 as seed ortholog is 100%.

Group of orthologs #545. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.vivax:168

P0CS80              	100.00%		A5K4T3              	100.00%
Bootstrap support for P0CS80 as seed ortholog is 100%.
Bootstrap support for A5K4T3 as seed ortholog is 100%.

Group of orthologs #546. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.vivax:167

Q5KF27              	100.00%		A5K1J8              	100.00%
Bootstrap support for Q5KF27 as seed ortholog is 100%.
Bootstrap support for A5K1J8 as seed ortholog is 100%.

Group of orthologs #547. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.vivax:85

Q5KL14              	100.00%		A5K5U9              	100.00%
Bootstrap support for Q5KL14 as seed ortholog is 98%.
Bootstrap support for A5K5U9 as seed ortholog is 95%.

Group of orthologs #548. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.vivax:167

Q5KK13              	100.00%		A5K915              	100.00%
Bootstrap support for Q5KK13 as seed ortholog is 100%.
Bootstrap support for A5K915 as seed ortholog is 100%.

Group of orthologs #549. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.vivax:167

Q5KL66              	100.00%		A5K857              	100.00%
Bootstrap support for Q5KL66 as seed ortholog is 100%.
Bootstrap support for A5K857 as seed ortholog is 100%.

Group of orthologs #550. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:166

Q5K756              	100.00%		A5K0C3              	100.00%
Q5KM34              	19.71%		
Bootstrap support for Q5K756 as seed ortholog is 99%.
Bootstrap support for A5K0C3 as seed ortholog is 100%.

Group of orthologs #551. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:12 P.vivax:38

P0CR08              	100.00%		A5K144              	100.00%
Bootstrap support for P0CR08 as seed ortholog is 54%.
Alternative seed ortholog is P0CQ82 (12 bits away from this cluster)
Bootstrap support for A5K144 as seed ortholog is 77%.

Group of orthologs #552. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.vivax:165

Q5KBN7              	100.00%		A5JZ99              	100.00%
Bootstrap support for Q5KBN7 as seed ortholog is 100%.
Bootstrap support for A5JZ99 as seed ortholog is 100%.

Group of orthologs #553. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.vivax:165

Q5KI91              	100.00%		A5K4B4              	100.00%
Bootstrap support for Q5KI91 as seed ortholog is 100%.
Bootstrap support for A5K4B4 as seed ortholog is 100%.

Group of orthologs #554. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.vivax:165

Q5KHR9              	100.00%		A5K876              	100.00%
Bootstrap support for Q5KHR9 as seed ortholog is 100%.
Bootstrap support for A5K876 as seed ortholog is 100%.

Group of orthologs #555. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.vivax:83

P0CM54              	100.00%		A5K3P1              	100.00%
Bootstrap support for P0CM54 as seed ortholog is 100%.
Bootstrap support for A5K3P1 as seed ortholog is 99%.

Group of orthologs #556. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.vivax:164

Q5KBP2              	100.00%		A5K6L0              	100.00%
Bootstrap support for Q5KBP2 as seed ortholog is 100%.
Bootstrap support for A5K6L0 as seed ortholog is 100%.

Group of orthologs #557. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.vivax:164

Q5KNA5              	100.00%		A5KBA8              	100.00%
Bootstrap support for Q5KNA5 as seed ortholog is 100%.
Bootstrap support for A5KBA8 as seed ortholog is 100%.

Group of orthologs #558. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:163

Q5K9R8              	100.00%		A5K2X7              	100.00%
Bootstrap support for Q5K9R8 as seed ortholog is 93%.
Bootstrap support for A5K2X7 as seed ortholog is 100%.

Group of orthologs #559. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.vivax:163

Q5K9B2              	100.00%		A5K6Y4              	100.00%
Bootstrap support for Q5K9B2 as seed ortholog is 100%.
Bootstrap support for A5K6Y4 as seed ortholog is 100%.

Group of orthologs #560. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.vivax:163

Q5KFR3              	100.00%		A5K6U1              	100.00%
Bootstrap support for Q5KFR3 as seed ortholog is 100%.
Bootstrap support for A5K6U1 as seed ortholog is 100%.

Group of orthologs #561. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.vivax:11

P0CO02              	100.00%		A5K475              	100.00%
Bootstrap support for P0CO02 as seed ortholog is 100%.
Bootstrap support for A5K475 as seed ortholog is 52%.
Alternative seed ortholog is A5JZL1 (11 bits away from this cluster)

Group of orthologs #562. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:160

Q5KEX2              	100.00%		A5JZF4              	100.00%
Bootstrap support for Q5KEX2 as seed ortholog is 98%.
Bootstrap support for A5JZF4 as seed ortholog is 100%.

Group of orthologs #563. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.vivax:160

Q5KEX8              	100.00%		A5JZG7              	100.00%
Bootstrap support for Q5KEX8 as seed ortholog is 100%.
Bootstrap support for A5JZG7 as seed ortholog is 100%.

Group of orthologs #564. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:160

Q5KFP2              	100.00%		A5K9H5              	100.00%
Bootstrap support for Q5KFP2 as seed ortholog is 99%.
Bootstrap support for A5K9H5 as seed ortholog is 100%.

Group of orthologs #565. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.vivax:159

Q5KC10              	100.00%		A5K8L8              	100.00%
Bootstrap support for Q5KC10 as seed ortholog is 100%.
Bootstrap support for A5K8L8 as seed ortholog is 100%.

Group of orthologs #566. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.vivax:159

Q5KGY0              	100.00%		A5K4Y6              	100.00%
Bootstrap support for Q5KGY0 as seed ortholog is 100%.
Bootstrap support for A5K4Y6 as seed ortholog is 100%.

Group of orthologs #567. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:7

Q5K7Y2              	100.00%		A5K2M4              	100.00%
Bootstrap support for Q5K7Y2 as seed ortholog is 100%.
Bootstrap support for A5K2M4 as seed ortholog is 97%.

Group of orthologs #568. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:158

Q5KDP4              	100.00%		A5K348              	100.00%
Bootstrap support for Q5KDP4 as seed ortholog is 100%.
Bootstrap support for A5K348 as seed ortholog is 100%.

Group of orthologs #569. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:158

P0CQ50              	100.00%		A5KB61              	100.00%
Bootstrap support for P0CQ50 as seed ortholog is 100%.
Bootstrap support for A5KB61 as seed ortholog is 100%.

Group of orthologs #570. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:158

Q5KD80              	100.00%		A5K7Q6              	100.00%
Bootstrap support for Q5KD80 as seed ortholog is 100%.
Bootstrap support for A5K7Q6 as seed ortholog is 100%.

Group of orthologs #571. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:158

Q5KDC2              	100.00%		A5K985              	100.00%
Bootstrap support for Q5KDC2 as seed ortholog is 100%.
Bootstrap support for A5K985 as seed ortholog is 100%.

Group of orthologs #572. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.vivax:158

Q5KIB2              	100.00%		A5KDW9              	100.00%
Bootstrap support for Q5KIB2 as seed ortholog is 100%.
Bootstrap support for A5KDW9 as seed ortholog is 100%.

Group of orthologs #573. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.vivax:157

Q5KBG5              	100.00%		A5K0Q3              	100.00%
Bootstrap support for Q5KBG5 as seed ortholog is 100%.
Bootstrap support for A5K0Q3 as seed ortholog is 100%.

Group of orthologs #574. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.vivax:34

Q5K7V1              	100.00%		A5K9U6              	100.00%
Bootstrap support for Q5K7V1 as seed ortholog is 75%.
Bootstrap support for A5K9U6 as seed ortholog is 77%.

Group of orthologs #575. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.vivax:156

Q5KHA1              	100.00%		A5JZA4              	100.00%
Bootstrap support for Q5KHA1 as seed ortholog is 100%.
Bootstrap support for A5JZA4 as seed ortholog is 100%.

Group of orthologs #576. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.vivax:156

Q5KKR0              	100.00%		A5K0G7              	100.00%
Bootstrap support for Q5KKR0 as seed ortholog is 100%.
Bootstrap support for A5K0G7 as seed ortholog is 100%.

Group of orthologs #577. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:23 P.vivax:75

Q5KEU0              	100.00%		A5K6S4              	100.00%
Bootstrap support for Q5KEU0 as seed ortholog is 81%.
Bootstrap support for A5K6S4 as seed ortholog is 99%.

Group of orthologs #578. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.vivax:156

Q5KLL5              	100.00%		A5K440              	100.00%
Bootstrap support for Q5KLL5 as seed ortholog is 100%.
Bootstrap support for A5K440 as seed ortholog is 100%.

Group of orthologs #579. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.vivax:155

P0CS08              	100.00%		A5JZE7              	100.00%
Bootstrap support for P0CS08 as seed ortholog is 100%.
Bootstrap support for A5JZE7 as seed ortholog is 100%.

Group of orthologs #580. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.vivax:155

Q5K8R7              	100.00%		A5K9G5              	100.00%
Bootstrap support for Q5K8R7 as seed ortholog is 100%.
Bootstrap support for A5K9G5 as seed ortholog is 100%.

Group of orthologs #581. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.vivax:155

Q5K9M5              	100.00%		A5K965              	100.00%
Bootstrap support for Q5K9M5 as seed ortholog is 100%.
Bootstrap support for A5K965 as seed ortholog is 100%.

Group of orthologs #582. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.vivax:155

Q5KCY7              	100.00%		A5KA93              	100.00%
Bootstrap support for Q5KCY7 as seed ortholog is 100%.
Bootstrap support for A5KA93 as seed ortholog is 100%.

Group of orthologs #583. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.vivax:155

Q5KHF9              	100.00%		A5K7R4              	100.00%
Bootstrap support for Q5KHF9 as seed ortholog is 100%.
Bootstrap support for A5K7R4 as seed ortholog is 100%.

Group of orthologs #584. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.vivax:155

Q5KPY2              	100.00%		A5K6U3              	100.00%
Bootstrap support for Q5KPY2 as seed ortholog is 82%.
Bootstrap support for A5K6U3 as seed ortholog is 100%.

Group of orthologs #585. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.vivax:155

Q5KKH3              	100.00%		A5KAY8              	100.00%
Bootstrap support for Q5KKH3 as seed ortholog is 100%.
Bootstrap support for A5KAY8 as seed ortholog is 100%.

Group of orthologs #586. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.vivax:154

Q5KGC9              	100.00%		A5K320              	100.00%
Bootstrap support for Q5KGC9 as seed ortholog is 100%.
Bootstrap support for A5K320 as seed ortholog is 100%.

Group of orthologs #587. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.vivax:56

Q5KJW2              	100.00%		A5K2H0              	100.00%
Bootstrap support for Q5KJW2 as seed ortholog is 78%.
Bootstrap support for A5K2H0 as seed ortholog is 99%.

Group of orthologs #588. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.vivax:90

Q5KCI0              	100.00%		A5KAY9              	100.00%
Bootstrap support for Q5KCI0 as seed ortholog is 100%.
Bootstrap support for A5KAY9 as seed ortholog is 99%.

Group of orthologs #589. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.vivax:154

Q5KHA2              	100.00%		A5K7D1              	100.00%
Bootstrap support for Q5KHA2 as seed ortholog is 100%.
Bootstrap support for A5K7D1 as seed ortholog is 100%.

Group of orthologs #590. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.vivax:153

Q5KEB3              	100.00%		A5K421              	100.00%
                    	       		A5JZW0              	24.69%
Bootstrap support for Q5KEB3 as seed ortholog is 100%.
Bootstrap support for A5K421 as seed ortholog is 100%.

Group of orthologs #591. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.vivax:153

Q5KE92              	100.00%		A5JZZ3              	100.00%
Bootstrap support for Q5KE92 as seed ortholog is 100%.
Bootstrap support for A5JZZ3 as seed ortholog is 100%.

Group of orthologs #592. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.vivax:153

Q5KPE3              	100.00%		A5KBK9              	100.00%
Bootstrap support for Q5KPE3 as seed ortholog is 100%.
Bootstrap support for A5KBK9 as seed ortholog is 100%.

Group of orthologs #593. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.vivax:152

Q5K9Z8              	100.00%		A5KCJ3              	100.00%
Bootstrap support for Q5K9Z8 as seed ortholog is 100%.
Bootstrap support for A5KCJ3 as seed ortholog is 100%.

Group of orthologs #594. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.vivax:151

P0CQ52              	100.00%		A5K4P9              	100.00%
Bootstrap support for P0CQ52 as seed ortholog is 100%.
Bootstrap support for A5K4P9 as seed ortholog is 100%.

Group of orthologs #595. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5K6Z0              	100.00%		A5K8F1              	100.00%
Bootstrap support for Q5K6Z0 as seed ortholog is 100%.
Bootstrap support for A5K8F1 as seed ortholog is 100%.

Group of orthologs #596. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.vivax:151

P0CS32              	100.00%		A5KAG5              	100.00%
Bootstrap support for P0CS32 as seed ortholog is 99%.
Bootstrap support for A5KAG5 as seed ortholog is 100%.

Group of orthologs #597. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5KES4              	100.00%		A5K4Q5              	100.00%
Bootstrap support for Q5KES4 as seed ortholog is 100%.
Bootstrap support for A5K4Q5 as seed ortholog is 100%.

Group of orthologs #598. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5KG23              	100.00%		A5K755              	100.00%
Bootstrap support for Q5KG23 as seed ortholog is 100%.
Bootstrap support for A5K755 as seed ortholog is 100%.

Group of orthologs #599. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5KLH8              	100.00%		A5K3L4              	100.00%
Bootstrap support for Q5KLH8 as seed ortholog is 100%.
Bootstrap support for A5K3L4 as seed ortholog is 100%.

Group of orthologs #600. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5KN51              	100.00%		A5K2Q3              	100.00%
Bootstrap support for Q5KN51 as seed ortholog is 100%.
Bootstrap support for A5K2Q3 as seed ortholog is 100%.

Group of orthologs #601. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5KI73              	100.00%		A5K9A6              	100.00%
Bootstrap support for Q5KI73 as seed ortholog is 100%.
Bootstrap support for A5K9A6 as seed ortholog is 100%.

Group of orthologs #602. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.vivax:151

Q5KNC5              	100.00%		A5KAT5              	100.00%
Bootstrap support for Q5KNC5 as seed ortholog is 100%.
Bootstrap support for A5KAT5 as seed ortholog is 100%.

Group of orthologs #603. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.vivax:150

Q5KFJ6              	100.00%		A5K873              	100.00%
Bootstrap support for Q5KFJ6 as seed ortholog is 100%.
Bootstrap support for A5K873 as seed ortholog is 100%.

Group of orthologs #604. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.vivax:149

P0CN10              	100.00%		A5JZ19              	100.00%
Bootstrap support for P0CN10 as seed ortholog is 100%.
Bootstrap support for A5JZ19 as seed ortholog is 100%.

Group of orthologs #605. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.vivax:149

Q5KII4              	100.00%		A5K2I4              	100.00%
Bootstrap support for Q5KII4 as seed ortholog is 100%.
Bootstrap support for A5K2I4 as seed ortholog is 100%.

Group of orthologs #606. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.vivax:148

Q5KGZ8              	100.00%		A5K519              	100.00%
Bootstrap support for Q5KGZ8 as seed ortholog is 100%.
Bootstrap support for A5K519 as seed ortholog is 100%.

Group of orthologs #607. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.vivax:148

Q5KFR2              	100.00%		A5KB74              	100.00%
Bootstrap support for Q5KFR2 as seed ortholog is 100%.
Bootstrap support for A5KB74 as seed ortholog is 100%.

Group of orthologs #608. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.vivax:147

Q5KGU0              	100.00%		A5K462              	100.00%
Q5KEK8              	7.67%		
Bootstrap support for Q5KGU0 as seed ortholog is 100%.
Bootstrap support for A5K462 as seed ortholog is 100%.

Group of orthologs #609. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.vivax:147

Q5KEA3              	100.00%		A5K772              	100.00%
Bootstrap support for Q5KEA3 as seed ortholog is 100%.
Bootstrap support for A5K772 as seed ortholog is 100%.

Group of orthologs #610. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.vivax:147

Q5KP63              	100.00%		A5K827              	100.00%
Bootstrap support for Q5KP63 as seed ortholog is 100%.
Bootstrap support for A5K827 as seed ortholog is 100%.

Group of orthologs #611. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.vivax:146

Q5KAD8              	100.00%		A5K8Y3              	100.00%
Bootstrap support for Q5KAD8 as seed ortholog is 100%.
Bootstrap support for A5K8Y3 as seed ortholog is 100%.

Group of orthologs #612. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.vivax:146

Q5KKS4              	100.00%		A5K2Q0              	100.00%
Bootstrap support for Q5KKS4 as seed ortholog is 100%.
Bootstrap support for A5K2Q0 as seed ortholog is 100%.

Group of orthologs #613. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.vivax:146

Q5KLJ6              	100.00%		A5KBD9              	100.00%
Bootstrap support for Q5KLJ6 as seed ortholog is 100%.
Bootstrap support for A5KBD9 as seed ortholog is 100%.

Group of orthologs #614. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.vivax:145

Q5KK51              	100.00%		A5JZM5              	100.00%
Bootstrap support for Q5KK51 as seed ortholog is 100%.
Bootstrap support for A5JZM5 as seed ortholog is 100%.

Group of orthologs #615. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.vivax:25

Q5KD79              	100.00%		A5KA21              	100.00%
Bootstrap support for Q5KD79 as seed ortholog is 100%.
Bootstrap support for A5KA21 as seed ortholog is 94%.

Group of orthologs #616. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.vivax:145

Q5KIH4              	100.00%		A5K8T0              	100.00%
Bootstrap support for Q5KIH4 as seed ortholog is 100%.
Bootstrap support for A5K8T0 as seed ortholog is 100%.

Group of orthologs #617. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.vivax:22

Q5KIM3              	100.00%		A5KB54              	100.00%
Bootstrap support for Q5KIM3 as seed ortholog is 100%.
Bootstrap support for A5KB54 as seed ortholog is 68%.
Alternative seed ortholog is A5KCF0 (22 bits away from this cluster)

Group of orthologs #618. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.vivax:144

Q5KM03              	100.00%		A5K0K8              	100.00%
Bootstrap support for Q5KM03 as seed ortholog is 100%.
Bootstrap support for A5K0K8 as seed ortholog is 100%.

Group of orthologs #619. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.vivax:143

Q5K8D6              	100.00%		A5K909              	100.00%
Bootstrap support for Q5K8D6 as seed ortholog is 100%.
Bootstrap support for A5K909 as seed ortholog is 100%.

Group of orthologs #620. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.vivax:143

Q5K757              	100.00%		A5KAT7              	100.00%
Bootstrap support for Q5K757 as seed ortholog is 100%.
Bootstrap support for A5KAT7 as seed ortholog is 100%.

Group of orthologs #621. Best score 142 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.vivax:142

Q5KBY8              	100.00%		A5K3N1              	100.00%
Bootstrap support for Q5KBY8 as seed ortholog is 100%.
Bootstrap support for A5K3N1 as seed ortholog is 100%.

Group of orthologs #622. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.vivax:141

Q5KJJ4              	100.00%		A5K007              	100.00%
Bootstrap support for Q5KJJ4 as seed ortholog is 100%.
Bootstrap support for A5K007 as seed ortholog is 100%.

Group of orthologs #623. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.vivax:141

Q5KPE9              	100.00%		A5K6A2              	100.00%
Bootstrap support for Q5KPE9 as seed ortholog is 100%.
Bootstrap support for A5K6A2 as seed ortholog is 100%.

Group of orthologs #624. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.vivax:140

Q5K7D3              	100.00%		A5KBJ5              	100.00%
Q5K7G0              	18.06%		
Q5KM76              	17.42%		
Q5KE75              	17.00%		
Q5KCC5              	12.04%		
Q5KC79              	10.88%		
Q5KGQ4              	10.67%		
Q5K6S8              	10.56%		
Q5KD28              	10.45%		
Q5KKB7              	10.35%		
Q5K8W0              	9.82%		
Q5KA16              	9.29%		
Q5KLB7              	9.19%		
Q5KMZ2              	8.66%		
Q5KHG7              	7.92%		
Q5K996              	7.71%		
Q5KKF1              	7.60%		
Q5KKT2              	6.86%		
Q5KE69              	6.02%		
Q5KGN5              	5.91%		
Q5KLH9              	5.60%		
Q5KCB9              	5.07%		
Bootstrap support for Q5K7D3 as seed ortholog is 72%.
Alternative seed ortholog is Q5KDS2 (27 bits away from this cluster)
Bootstrap support for A5KBJ5 as seed ortholog is 100%.

Group of orthologs #625. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.vivax:140

Q5KA36              	100.00%		A5K4I7              	100.00%
Bootstrap support for Q5KA36 as seed ortholog is 100%.
Bootstrap support for A5K4I7 as seed ortholog is 100%.

Group of orthologs #626. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.vivax:140

Q5KPZ5              	100.00%		A5K432              	100.00%
Bootstrap support for Q5KPZ5 as seed ortholog is 100%.
Bootstrap support for A5K432 as seed ortholog is 100%.

Group of orthologs #627. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.vivax:139

Q5KM54              	100.00%		A5K6N6              	100.00%
Bootstrap support for Q5KM54 as seed ortholog is 100%.
Bootstrap support for A5K6N6 as seed ortholog is 100%.

Group of orthologs #628. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.vivax:138

Q5K8G1              	100.00%		A5K554              	100.00%
                    	       		A5KDE7              	100.00%
                    	       		A5KDK8              	52.11%
                    	       		A5KDL7              	48.00%
Bootstrap support for Q5K8G1 as seed ortholog is 100%.
Bootstrap support for A5K554 as seed ortholog is 100%.
Bootstrap support for A5KDE7 as seed ortholog is 100%.

Group of orthologs #629. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.vivax:47

Q5KDT4              	100.00%		A5KC81              	100.00%
Q5KD75              	21.77%		A5K999              	11.16%
Bootstrap support for Q5KDT4 as seed ortholog is 90%.
Bootstrap support for A5KC81 as seed ortholog is 93%.

Group of orthologs #630. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.vivax:138

Q5K7J3              	100.00%		A5K6B0              	100.00%
Bootstrap support for Q5K7J3 as seed ortholog is 100%.
Bootstrap support for A5K6B0 as seed ortholog is 100%.

Group of orthologs #631. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:138

Q5KDG6              	100.00%		A5K430              	100.00%
Bootstrap support for Q5KDG6 as seed ortholog is 83%.
Bootstrap support for A5K430 as seed ortholog is 100%.

Group of orthologs #632. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.vivax:137

Q5KLE6              	100.00%		A5K390              	100.00%
Bootstrap support for Q5KLE6 as seed ortholog is 100%.
Bootstrap support for A5K390 as seed ortholog is 100%.

Group of orthologs #633. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:17

P0CS66              	100.00%		A5K312              	100.00%
Bootstrap support for P0CS66 as seed ortholog is 100%.
Bootstrap support for A5K312 as seed ortholog is 68%.
Alternative seed ortholog is A5KB51 (17 bits away from this cluster)

Group of orthologs #634. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.vivax:25

Q5K818              	100.00%		A5K3Z0              	100.00%
Bootstrap support for Q5K818 as seed ortholog is 56%.
Alternative seed ortholog is Q5KI42 (5 bits away from this cluster)
Bootstrap support for A5K3Z0 as seed ortholog is 83%.

Group of orthologs #635. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:136

Q5K974              	100.00%		A5KCH8              	100.00%
Bootstrap support for Q5K974 as seed ortholog is 100%.
Bootstrap support for A5KCH8 as seed ortholog is 100%.

Group of orthologs #636. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:136

Q5KHU7              	100.00%		A5K507              	100.00%
Bootstrap support for Q5KHU7 as seed ortholog is 100%.
Bootstrap support for A5K507 as seed ortholog is 100%.

Group of orthologs #637. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:79

Q5KFV8              	100.00%		A5K9Q6              	100.00%
Bootstrap support for Q5KFV8 as seed ortholog is 100%.
Bootstrap support for A5K9Q6 as seed ortholog is 99%.

Group of orthologs #638. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.vivax:136

Q5KKY5              	100.00%		A5K757              	100.00%
Bootstrap support for Q5KKY5 as seed ortholog is 100%.
Bootstrap support for A5K757 as seed ortholog is 100%.

Group of orthologs #639. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.vivax:135

P0CM26              	100.00%		A5K045              	100.00%
Bootstrap support for P0CM26 as seed ortholog is 100%.
Bootstrap support for A5K045 as seed ortholog is 100%.

Group of orthologs #640. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:135

P0CS28              	100.00%		A5K7F4              	100.00%
Bootstrap support for P0CS28 as seed ortholog is 94%.
Bootstrap support for A5K7F4 as seed ortholog is 100%.

Group of orthologs #641. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.vivax:135

Q5KJ01              	100.00%		A5K2Q9              	100.00%
Bootstrap support for Q5KJ01 as seed ortholog is 100%.
Bootstrap support for A5K2Q9 as seed ortholog is 100%.

Group of orthologs #642. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.vivax:134

Q5K7W8              	100.00%		A5JZN9              	100.00%
Bootstrap support for Q5K7W8 as seed ortholog is 100%.
Bootstrap support for A5JZN9 as seed ortholog is 100%.

Group of orthologs #643. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.vivax:134

Q5KEZ5              	100.00%		A5K4U9              	100.00%
Bootstrap support for Q5KEZ5 as seed ortholog is 100%.
Bootstrap support for A5K4U9 as seed ortholog is 100%.

Group of orthologs #644. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.vivax:53

Q5KMP1              	100.00%		A5K4E9              	100.00%
Bootstrap support for Q5KMP1 as seed ortholog is 100%.
Bootstrap support for A5K4E9 as seed ortholog is 28%.
Alternative seed ortholog is A5K4X9 (53 bits away from this cluster)

Group of orthologs #645. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.vivax:133

P0CN50              	100.00%		A5K977              	100.00%
Bootstrap support for P0CN50 as seed ortholog is 100%.
Bootstrap support for A5K977 as seed ortholog is 100%.

Group of orthologs #646. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.vivax:133

Q5KG91              	100.00%		A5K0D9              	100.00%
Bootstrap support for Q5KG91 as seed ortholog is 100%.
Bootstrap support for A5K0D9 as seed ortholog is 100%.

Group of orthologs #647. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.vivax:63

Q5KFS7              	100.00%		A5K908              	100.00%
Bootstrap support for Q5KFS7 as seed ortholog is 90%.
Bootstrap support for A5K908 as seed ortholog is 98%.

Group of orthologs #648. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.vivax:132

Q5KN16              	100.00%		A5K2S5              	100.00%
Bootstrap support for Q5KN16 as seed ortholog is 100%.
Bootstrap support for A5K2S5 as seed ortholog is 100%.

Group of orthologs #649. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.vivax:132

Q5KQ40              	100.00%		A5K644              	100.00%
Bootstrap support for Q5KQ40 as seed ortholog is 100%.
Bootstrap support for A5K644 as seed ortholog is 100%.

Group of orthologs #650. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.vivax:28

Q5K8I0              	100.00%		A5K1B4              	100.00%
Bootstrap support for Q5K8I0 as seed ortholog is 100%.
Bootstrap support for A5K1B4 as seed ortholog is 74%.
Alternative seed ortholog is A5K5K7 (28 bits away from this cluster)

Group of orthologs #651. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.vivax:131

P0CR18              	100.00%		A5K9L2              	100.00%
Bootstrap support for P0CR18 as seed ortholog is 100%.
Bootstrap support for A5K9L2 as seed ortholog is 100%.

Group of orthologs #652. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.vivax:131

Q5KCD2              	100.00%		A5K4E2              	100.00%
Bootstrap support for Q5KCD2 as seed ortholog is 100%.
Bootstrap support for A5K4E2 as seed ortholog is 100%.

Group of orthologs #653. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.vivax:131

Q5KHZ6              	100.00%		A5KE18              	100.00%
Bootstrap support for Q5KHZ6 as seed ortholog is 100%.
Bootstrap support for A5KE18 as seed ortholog is 100%.

Group of orthologs #654. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.vivax:130

Q5KBT5              	100.00%		A5KB19              	100.00%
Bootstrap support for Q5KBT5 as seed ortholog is 100%.
Bootstrap support for A5KB19 as seed ortholog is 100%.

Group of orthologs #655. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.vivax:130

Q5KCP3              	100.00%		A5KBU6              	100.00%
Bootstrap support for Q5KCP3 as seed ortholog is 100%.
Bootstrap support for A5KBU6 as seed ortholog is 100%.

Group of orthologs #656. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.vivax:130

Q5KLM0              	100.00%		A5KB89              	100.00%
Bootstrap support for Q5KLM0 as seed ortholog is 100%.
Bootstrap support for A5KB89 as seed ortholog is 100%.

Group of orthologs #657. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.vivax:129

Q5KAE4              	100.00%		A5K5N5              	100.00%
Bootstrap support for Q5KAE4 as seed ortholog is 100%.
Bootstrap support for A5K5N5 as seed ortholog is 100%.

Group of orthologs #658. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.vivax:129

Q5KFS4              	100.00%		A5K2I6              	100.00%
Bootstrap support for Q5KFS4 as seed ortholog is 100%.
Bootstrap support for A5K2I6 as seed ortholog is 100%.

Group of orthologs #659. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.vivax:129

Q5KIG4              	100.00%		A5K1J9              	100.00%
Bootstrap support for Q5KIG4 as seed ortholog is 100%.
Bootstrap support for A5K1J9 as seed ortholog is 100%.

Group of orthologs #660. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.vivax:129

Q5KHZ1              	100.00%		A5K709              	100.00%
Bootstrap support for Q5KHZ1 as seed ortholog is 100%.
Bootstrap support for A5K709 as seed ortholog is 100%.

Group of orthologs #661. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.vivax:129

Q5KPS5              	100.00%		A5K1F8              	100.00%
Bootstrap support for Q5KPS5 as seed ortholog is 100%.
Bootstrap support for A5K1F8 as seed ortholog is 100%.

Group of orthologs #662. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.vivax:129

Q5KPM8              	100.00%		A5KCD7              	100.00%
Bootstrap support for Q5KPM8 as seed ortholog is 100%.
Bootstrap support for A5KCD7 as seed ortholog is 100%.

Group of orthologs #663. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.vivax:128

Q5KBS3              	100.00%		A5JZN1              	100.00%
                    	       		A5K269              	27.00%
Bootstrap support for Q5KBS3 as seed ortholog is 100%.
Bootstrap support for A5JZN1 as seed ortholog is 100%.

Group of orthologs #664. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.vivax:128

Q5KN72              	100.00%		A5K7E2              	100.00%
Bootstrap support for Q5KN72 as seed ortholog is 100%.
Bootstrap support for A5K7E2 as seed ortholog is 100%.

Group of orthologs #665. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.vivax:127

Q5KHI1              	100.00%		A5K975              	100.00%
                    	       		A5KE13              	9.63%
Bootstrap support for Q5KHI1 as seed ortholog is 100%.
Bootstrap support for A5K975 as seed ortholog is 100%.

Group of orthologs #666. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.vivax:127

P0CQ64              	100.00%		A5K3X2              	100.00%
Bootstrap support for P0CQ64 as seed ortholog is 100%.
Bootstrap support for A5K3X2 as seed ortholog is 100%.

Group of orthologs #667. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.vivax:127

Q5KBW6              	100.00%		A5JZ21              	100.00%
Bootstrap support for Q5KBW6 as seed ortholog is 100%.
Bootstrap support for A5JZ21 as seed ortholog is 100%.

Group of orthologs #668. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.vivax:126

Q5K745              	100.00%		A5JZR9              	100.00%
Q5KDB7              	7.17%		
Bootstrap support for Q5K745 as seed ortholog is 100%.
Bootstrap support for A5JZR9 as seed ortholog is 100%.

Group of orthologs #669. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.vivax:126

Q5K7W7              	100.00%		A5K038              	100.00%
                    	       		A5KDI5              	100.00%
Bootstrap support for Q5K7W7 as seed ortholog is 100%.
Bootstrap support for A5K038 as seed ortholog is 100%.
Bootstrap support for A5KDI5 as seed ortholog is 100%.

Group of orthologs #670. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.vivax:126

Q5KGV9              	100.00%		A5K0Y7              	100.00%
                    	       		A5KDP3              	32.21%
Bootstrap support for Q5KGV9 as seed ortholog is 100%.
Bootstrap support for A5K0Y7 as seed ortholog is 100%.

Group of orthologs #671. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.vivax:84

Q5K7J1              	100.00%		A5K813              	100.00%
Bootstrap support for Q5K7J1 as seed ortholog is 100%.
Bootstrap support for A5K813 as seed ortholog is 99%.

Group of orthologs #672. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.vivax:126

Q5KFN9              	100.00%		A5KBI2              	100.00%
Bootstrap support for Q5KFN9 as seed ortholog is 100%.
Bootstrap support for A5KBI2 as seed ortholog is 100%.

Group of orthologs #673. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.vivax:125

Q5KL89              	100.00%		A5K303              	100.00%
Bootstrap support for Q5KL89 as seed ortholog is 100%.
Bootstrap support for A5K303 as seed ortholog is 100%.

Group of orthologs #674. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.vivax:124

Q5KMM9              	100.00%		A5K183              	100.00%
Bootstrap support for Q5KMM9 as seed ortholog is 100%.
Bootstrap support for A5K183 as seed ortholog is 100%.

Group of orthologs #675. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.vivax:66

Q5KNC7              	100.00%		A5K1I5              	100.00%
Bootstrap support for Q5KNC7 as seed ortholog is 100%.
Bootstrap support for A5K1I5 as seed ortholog is 99%.

Group of orthologs #676. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

P0CQ20              	100.00%		A5K815              	100.00%
P0CQ18              	53.70%		
Bootstrap support for P0CQ20 as seed ortholog is 100%.
Bootstrap support for A5K815 as seed ortholog is 100%.

Group of orthologs #677. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5KA28              	100.00%		A5JZ55              	100.00%
Bootstrap support for Q5KA28 as seed ortholog is 100%.
Bootstrap support for A5JZ55 as seed ortholog is 100%.

Group of orthologs #678. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5KAU4              	100.00%		A5K7W0              	100.00%
Bootstrap support for Q5KAU4 as seed ortholog is 100%.
Bootstrap support for A5K7W0 as seed ortholog is 100%.

Group of orthologs #679. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5K777              	100.00%		A5KCH3              	100.00%
Bootstrap support for Q5K777 as seed ortholog is 100%.
Bootstrap support for A5KCH3 as seed ortholog is 100%.

Group of orthologs #680. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5KDQ5              	100.00%		A5K7B8              	100.00%
Bootstrap support for Q5KDQ5 as seed ortholog is 100%.
Bootstrap support for A5K7B8 as seed ortholog is 100%.

Group of orthologs #681. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:56

Q5K9P5              	100.00%		A5KEB9              	100.00%
Bootstrap support for Q5K9P5 as seed ortholog is 100%.
Bootstrap support for A5KEB9 as seed ortholog is 96%.

Group of orthologs #682. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5KFL6              	100.00%		A5KA37              	100.00%
Bootstrap support for Q5KFL6 as seed ortholog is 100%.
Bootstrap support for A5KA37 as seed ortholog is 100%.

Group of orthologs #683. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5KP99              	100.00%		A5K408              	100.00%
Bootstrap support for Q5KP99 as seed ortholog is 100%.
Bootstrap support for A5K408 as seed ortholog is 100%.

Group of orthologs #684. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.vivax:123

Q5KMR3              	100.00%		A5KB96              	100.00%
Bootstrap support for Q5KMR3 as seed ortholog is 100%.
Bootstrap support for A5KB96 as seed ortholog is 100%.

Group of orthologs #685. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.vivax:122

Q5KJC6              	100.00%		A5K172              	100.00%
Q5KNA1              	100.00%		
Bootstrap support for Q5KJC6 as seed ortholog is 100%.
Bootstrap support for Q5KNA1 as seed ortholog is 100%.
Bootstrap support for A5K172 as seed ortholog is 100%.

Group of orthologs #686. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:122

P0CR34              	100.00%		A5K658              	100.00%
Bootstrap support for P0CR34 as seed ortholog is 96%.
Bootstrap support for A5K658 as seed ortholog is 100%.

Group of orthologs #687. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.vivax:122

Q5KEK2              	100.00%		A5K5M2              	100.00%
Bootstrap support for Q5KEK2 as seed ortholog is 83%.
Bootstrap support for A5K5M2 as seed ortholog is 100%.

Group of orthologs #688. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.vivax:122

Q5KAQ7              	100.00%		A5K9N5              	100.00%
Bootstrap support for Q5KAQ7 as seed ortholog is 100%.
Bootstrap support for A5K9N5 as seed ortholog is 100%.

Group of orthologs #689. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.vivax:122

Q5KLK6              	100.00%		A5KBQ3              	100.00%
Bootstrap support for Q5KLK6 as seed ortholog is 100%.
Bootstrap support for A5KBQ3 as seed ortholog is 100%.

Group of orthologs #690. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.vivax:121

Q5KFF0              	100.00%		A5JZU7              	100.00%
Bootstrap support for Q5KFF0 as seed ortholog is 100%.
Bootstrap support for A5JZU7 as seed ortholog is 100%.

Group of orthologs #691. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.vivax:121

P0CO54              	100.00%		A5KCE2              	100.00%
Bootstrap support for P0CO54 as seed ortholog is 100%.
Bootstrap support for A5KCE2 as seed ortholog is 100%.

Group of orthologs #692. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.vivax:121

Q5KFG9              	100.00%		A5K584              	100.00%
Bootstrap support for Q5KFG9 as seed ortholog is 100%.
Bootstrap support for A5K584 as seed ortholog is 100%.

Group of orthologs #693. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.vivax:121

Q5KH08              	100.00%		A5KA14              	100.00%
Bootstrap support for Q5KH08 as seed ortholog is 100%.
Bootstrap support for A5KA14 as seed ortholog is 100%.

Group of orthologs #694. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.vivax:121

Q5KI23              	100.00%		A5K9G4              	100.00%
Bootstrap support for Q5KI23 as seed ortholog is 100%.
Bootstrap support for A5K9G4 as seed ortholog is 100%.

Group of orthologs #695. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.vivax:121

Q5KNT0              	100.00%		A5KEA0              	100.00%
Bootstrap support for Q5KNT0 as seed ortholog is 100%.
Bootstrap support for A5KEA0 as seed ortholog is 100%.

Group of orthologs #696. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.vivax:120

Q5KDU6              	100.00%		A5JZ74              	100.00%
Bootstrap support for Q5KDU6 as seed ortholog is 100%.
Bootstrap support for A5JZ74 as seed ortholog is 100%.

Group of orthologs #697. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.vivax:120

P0CR82              	100.00%		A5K9P6              	100.00%
Bootstrap support for P0CR82 as seed ortholog is 100%.
Bootstrap support for A5K9P6 as seed ortholog is 100%.

Group of orthologs #698. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.vivax:120

Q5KD00              	100.00%		A5K9C1              	100.00%
Bootstrap support for Q5KD00 as seed ortholog is 100%.
Bootstrap support for A5K9C1 as seed ortholog is 100%.

Group of orthologs #699. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:119

P0CN20              	100.00%		A5K0V5              	100.00%
Bootstrap support for P0CN20 as seed ortholog is 100%.
Bootstrap support for A5K0V5 as seed ortholog is 100%.

Group of orthologs #700. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:74

Q5K9R0              	100.00%		A5K3M2              	100.00%
Bootstrap support for Q5K9R0 as seed ortholog is 100%.
Bootstrap support for A5K3M2 as seed ortholog is 71%.
Alternative seed ortholog is A5KBF0 (74 bits away from this cluster)

Group of orthologs #701. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:119

Q5KB64              	100.00%		A5KAH1              	100.00%
Bootstrap support for Q5KB64 as seed ortholog is 100%.
Bootstrap support for A5KAH1 as seed ortholog is 100%.

Group of orthologs #702. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:119

Q5KQ86              	100.00%		A5K0D8              	100.00%
Bootstrap support for Q5KQ86 as seed ortholog is 100%.
Bootstrap support for A5K0D8 as seed ortholog is 100%.

Group of orthologs #703. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:119

Q5KLP3              	100.00%		A5K6V3              	100.00%
Bootstrap support for Q5KLP3 as seed ortholog is 100%.
Bootstrap support for A5K6V3 as seed ortholog is 100%.

Group of orthologs #704. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.vivax:119

Q5KN25              	100.00%		A5KAB1              	100.00%
Bootstrap support for Q5KN25 as seed ortholog is 100%.
Bootstrap support for A5KAB1 as seed ortholog is 100%.

Group of orthologs #705. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:25 P.vivax:118

Q5KCQ4              	100.00%		A5K776              	100.00%
Bootstrap support for Q5KCQ4 as seed ortholog is 88%.
Bootstrap support for A5K776 as seed ortholog is 100%.

Group of orthologs #706. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:118

Q5KEC8              	100.00%		A5K633              	100.00%
Bootstrap support for Q5KEC8 as seed ortholog is 100%.
Bootstrap support for A5K633 as seed ortholog is 100%.

Group of orthologs #707. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.vivax:43

Q5KIS6              	100.00%		A5K747              	100.00%
Bootstrap support for Q5KIS6 as seed ortholog is 80%.
Bootstrap support for A5K747 as seed ortholog is 98%.

Group of orthologs #708. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:118

Q5KN65              	100.00%		A5K3E8              	100.00%
Bootstrap support for Q5KN65 as seed ortholog is 100%.
Bootstrap support for A5K3E8 as seed ortholog is 100%.

Group of orthologs #709. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:118

Q5KMC4              	100.00%		A5K4A6              	100.00%
Bootstrap support for Q5KMC4 as seed ortholog is 100%.
Bootstrap support for A5K4A6 as seed ortholog is 100%.

Group of orthologs #710. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.vivax:118

Q5KM35              	100.00%		A5K7N6              	100.00%
Bootstrap support for Q5KM35 as seed ortholog is 97%.
Bootstrap support for A5K7N6 as seed ortholog is 100%.

Group of orthologs #711. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.vivax:118

Q5KLV9              	100.00%		A5K9I3              	100.00%
Bootstrap support for Q5KLV9 as seed ortholog is 100%.
Bootstrap support for A5K9I3 as seed ortholog is 100%.

Group of orthologs #712. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:49

Q5KGS0              	100.00%		A5K6C3              	100.00%
Q5K717              	6.32%		
Q5KE65              	5.60%		
Bootstrap support for Q5KGS0 as seed ortholog is 100%.
Bootstrap support for A5K6C3 as seed ortholog is 97%.

Group of orthologs #713. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:117

Q5K8L4              	100.00%		A5K597              	100.00%
                    	       		A5KDL3              	48.36%
Bootstrap support for Q5K8L4 as seed ortholog is 100%.
Bootstrap support for A5K597 as seed ortholog is 100%.

Group of orthologs #714. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:117

Q5KGC6              	100.00%		A5JZ40              	100.00%
Bootstrap support for Q5KGC6 as seed ortholog is 100%.
Bootstrap support for A5JZ40 as seed ortholog is 100%.

Group of orthologs #715. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:117

Q5KBT3              	100.00%		A5K6R1              	100.00%
Bootstrap support for Q5KBT3 as seed ortholog is 100%.
Bootstrap support for A5K6R1 as seed ortholog is 100%.

Group of orthologs #716. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:117

Q5KKU8              	100.00%		A5K1S2              	100.00%
Bootstrap support for Q5KKU8 as seed ortholog is 100%.
Bootstrap support for A5K1S2 as seed ortholog is 100%.

Group of orthologs #717. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:117

Q5KGS9              	100.00%		A5K9U0              	100.00%
Bootstrap support for Q5KGS9 as seed ortholog is 100%.
Bootstrap support for A5K9U0 as seed ortholog is 100%.

Group of orthologs #718. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.vivax:117

Q5KMX2              	100.00%		A5K4R6              	100.00%
Bootstrap support for Q5KMX2 as seed ortholog is 100%.
Bootstrap support for A5K4R6 as seed ortholog is 100%.

Group of orthologs #719. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.vivax:116

Q5KJT1              	100.00%		A5JZH6              	100.00%
Bootstrap support for Q5KJT1 as seed ortholog is 100%.
Bootstrap support for A5JZH6 as seed ortholog is 100%.

Group of orthologs #720. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.vivax:116

Q5KL56              	100.00%		A5KA70              	100.00%
Bootstrap support for Q5KL56 as seed ortholog is 100%.
Bootstrap support for A5KA70 as seed ortholog is 100%.

Group of orthologs #721. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.vivax:43

Q5KDR7              	100.00%		A5K8R9              	100.00%
Bootstrap support for Q5KDR7 as seed ortholog is 72%.
Alternative seed ortholog is Q5KHD3 (21 bits away from this cluster)
Bootstrap support for A5K8R9 as seed ortholog is 86%.

Group of orthologs #722. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.vivax:114

Q5KIZ8              	100.00%		A5K4I3              	100.00%
Bootstrap support for Q5KIZ8 as seed ortholog is 100%.
Bootstrap support for A5K4I3 as seed ortholog is 100%.

Group of orthologs #723. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.vivax:21

Q5KGQ8              	100.00%		A5K8V6              	100.00%
Bootstrap support for Q5KGQ8 as seed ortholog is 100%.
Bootstrap support for A5K8V6 as seed ortholog is 75%.

Group of orthologs #724. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.vivax:113

Q5KH24              	100.00%		A5K211              	100.00%
Bootstrap support for Q5KH24 as seed ortholog is 100%.
Bootstrap support for A5K211 as seed ortholog is 100%.

Group of orthologs #725. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.vivax:112

Q5KFZ1              	100.00%		A5K3A3              	100.00%
Bootstrap support for Q5KFZ1 as seed ortholog is 100%.
Bootstrap support for A5K3A3 as seed ortholog is 100%.

Group of orthologs #726. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.vivax:112

Q5KLK2              	100.00%		A5KDZ2              	100.00%
Bootstrap support for Q5KLK2 as seed ortholog is 100%.
Bootstrap support for A5KDZ2 as seed ortholog is 100%.

Group of orthologs #727. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.vivax:111

P0CQ12              	100.00%		A5K349              	100.00%
Bootstrap support for P0CQ12 as seed ortholog is 100%.
Bootstrap support for A5K349 as seed ortholog is 100%.

Group of orthologs #728. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.vivax:7

Q5K766              	100.00%		A5K372              	100.00%
Bootstrap support for Q5K766 as seed ortholog is 100%.
Bootstrap support for A5K372 as seed ortholog is 61%.
Alternative seed ortholog is A5KDX2 (7 bits away from this cluster)

Group of orthologs #729. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.vivax:111

Q5KG59              	100.00%		A5K0R0              	100.00%
Bootstrap support for Q5KG59 as seed ortholog is 100%.
Bootstrap support for A5K0R0 as seed ortholog is 100%.

Group of orthologs #730. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.vivax:111

Q5KJN4              	100.00%		A5K7F6              	100.00%
Bootstrap support for Q5KJN4 as seed ortholog is 100%.
Bootstrap support for A5K7F6 as seed ortholog is 100%.

Group of orthologs #731. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.vivax:111

Q5KM44              	100.00%		A5KBT9              	100.00%
Bootstrap support for Q5KM44 as seed ortholog is 100%.
Bootstrap support for A5KBT9 as seed ortholog is 100%.

Group of orthologs #732. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:110

Q5K978              	100.00%		A5K2Q1              	100.00%
Q5KB78              	5.65%		
Bootstrap support for Q5K978 as seed ortholog is 100%.
Bootstrap support for A5K2Q1 as seed ortholog is 100%.

Group of orthologs #733. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:110

Q5KER8              	100.00%		A5KBP7              	100.00%
Q5KGW3              	24.13%		
Bootstrap support for Q5KER8 as seed ortholog is 100%.
Bootstrap support for A5KBP7 as seed ortholog is 100%.

Group of orthologs #734. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:110

Q5KH76              	100.00%		A5K582              	100.00%
Bootstrap support for Q5KH76 as seed ortholog is 100%.
Bootstrap support for A5K582 as seed ortholog is 100%.

Group of orthologs #735. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:110

Q5KK99              	100.00%		A5KB87              	100.00%
Bootstrap support for Q5KK99 as seed ortholog is 100%.
Bootstrap support for A5KB87 as seed ortholog is 100%.

Group of orthologs #736. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.vivax:110

Q5KPC1              	100.00%		A5K9Z1              	100.00%
Bootstrap support for Q5KPC1 as seed ortholog is 100%.
Bootstrap support for A5K9Z1 as seed ortholog is 100%.

Group of orthologs #737. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.vivax:109

Q5KDM5              	100.00%		A5K6X1              	100.00%
Q5KDM8              	90.00%		
Bootstrap support for Q5KDM5 as seed ortholog is 94%.
Bootstrap support for A5K6X1 as seed ortholog is 100%.

Group of orthologs #738. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.vivax:109

Q5KBQ4              	100.00%		A5KB50              	100.00%
Bootstrap support for Q5KBQ4 as seed ortholog is 100%.
Bootstrap support for A5KB50 as seed ortholog is 100%.

Group of orthologs #739. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.vivax:108

Q5KMI3              	100.00%		A5JZD5              	100.00%
Bootstrap support for Q5KMI3 as seed ortholog is 100%.
Bootstrap support for A5JZD5 as seed ortholog is 100%.

Group of orthologs #740. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.vivax:108

Q5KK70              	100.00%		A5K3X3              	100.00%
Bootstrap support for Q5KK70 as seed ortholog is 100%.
Bootstrap support for A5K3X3 as seed ortholog is 100%.

Group of orthologs #741. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:36 P.vivax:108

Q5KJ65              	100.00%		A5K5U8              	100.00%
Bootstrap support for Q5KJ65 as seed ortholog is 86%.
Bootstrap support for A5K5U8 as seed ortholog is 100%.

Group of orthologs #742. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.vivax:107

Q5KFU2              	100.00%		A5K8D1              	100.00%
Bootstrap support for Q5KFU2 as seed ortholog is 100%.
Bootstrap support for A5K8D1 as seed ortholog is 100%.

Group of orthologs #743. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.vivax:107

Q5KJL6              	100.00%		A5K662              	100.00%
Bootstrap support for Q5KJL6 as seed ortholog is 100%.
Bootstrap support for A5K662 as seed ortholog is 100%.

Group of orthologs #744. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.vivax:107

Q5KGL6              	100.00%		A5KAH3              	100.00%
Bootstrap support for Q5KGL6 as seed ortholog is 100%.
Bootstrap support for A5KAH3 as seed ortholog is 100%.

Group of orthologs #745. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.vivax:107

Q5KJ00              	100.00%		A5KC87              	100.00%
Bootstrap support for Q5KJ00 as seed ortholog is 100%.
Bootstrap support for A5KC87 as seed ortholog is 100%.

Group of orthologs #746. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.vivax:106

P0CS40              	100.00%		A5K995              	100.00%
Bootstrap support for P0CS40 as seed ortholog is 100%.
Bootstrap support for A5K995 as seed ortholog is 100%.

Group of orthologs #747. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.vivax:106

Q5K7B3              	100.00%		A5KC55              	100.00%
Bootstrap support for Q5K7B3 as seed ortholog is 100%.
Bootstrap support for A5KC55 as seed ortholog is 100%.

Group of orthologs #748. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.vivax:106

Q5KN73              	100.00%		A5K4R0              	100.00%
Bootstrap support for Q5KN73 as seed ortholog is 100%.
Bootstrap support for A5K4R0 as seed ortholog is 100%.

Group of orthologs #749. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.vivax:106

Q5KNE0              	100.00%		A5KAW8              	100.00%
Bootstrap support for Q5KNE0 as seed ortholog is 100%.
Bootstrap support for A5KAW8 as seed ortholog is 100%.

Group of orthologs #750. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.vivax:106

Q5KPC0              	100.00%		A5KC45              	100.00%
Bootstrap support for Q5KPC0 as seed ortholog is 100%.
Bootstrap support for A5KC45 as seed ortholog is 100%.

Group of orthologs #751. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:105

Q5K8K2              	100.00%		A5K6E6              	100.00%
Bootstrap support for Q5K8K2 as seed ortholog is 100%.
Bootstrap support for A5K6E6 as seed ortholog is 100%.

Group of orthologs #752. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:105

Q5KA21              	100.00%		A5K7W6              	100.00%
Bootstrap support for Q5KA21 as seed ortholog is 100%.
Bootstrap support for A5K7W6 as seed ortholog is 100%.

Group of orthologs #753. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:105

Q5KPN8              	100.00%		A5JZ25              	100.00%
Bootstrap support for Q5KPN8 as seed ortholog is 100%.
Bootstrap support for A5JZ25 as seed ortholog is 100%.

Group of orthologs #754. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:105

Q5KIJ9              	100.00%		A5K6B9              	100.00%
Bootstrap support for Q5KIJ9 as seed ortholog is 100%.
Bootstrap support for A5K6B9 as seed ortholog is 100%.

Group of orthologs #755. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:105

Q5KPS7              	100.00%		A5K3F1              	100.00%
Bootstrap support for Q5KPS7 as seed ortholog is 100%.
Bootstrap support for A5K3F1 as seed ortholog is 100%.

Group of orthologs #756. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.vivax:105

Q5KJG1              	100.00%		A5K9V3              	100.00%
Bootstrap support for Q5KJG1 as seed ortholog is 100%.
Bootstrap support for A5K9V3 as seed ortholog is 100%.

Group of orthologs #757. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.vivax:104

P0CP32              	100.00%		A5K4E8              	100.00%
Bootstrap support for P0CP32 as seed ortholog is 100%.
Bootstrap support for A5K4E8 as seed ortholog is 100%.

Group of orthologs #758. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.vivax:104

Q5KND0              	100.00%		A5JZ58              	100.00%
Bootstrap support for Q5KND0 as seed ortholog is 100%.
Bootstrap support for A5JZ58 as seed ortholog is 100%.

Group of orthologs #759. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.vivax:104

Q5KB98              	100.00%		A5KAW6              	100.00%
Bootstrap support for Q5KB98 as seed ortholog is 100%.
Bootstrap support for A5KAW6 as seed ortholog is 100%.

Group of orthologs #760. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:2 P.vivax:103

Q5KAK0              	100.00%		A5K5L1              	100.00%
Bootstrap support for Q5KAK0 as seed ortholog is 52%.
Alternative seed ortholog is Q5KKH7 (2 bits away from this cluster)
Bootstrap support for A5K5L1 as seed ortholog is 100%.

Group of orthologs #761. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.vivax:103

Q5KJW6              	100.00%		A5K493              	100.00%
Bootstrap support for Q5KJW6 as seed ortholog is 100%.
Bootstrap support for A5K493 as seed ortholog is 100%.

Group of orthologs #762. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.vivax:103

Q5KFI3              	100.00%		A5KC76              	100.00%
Bootstrap support for Q5KFI3 as seed ortholog is 100%.
Bootstrap support for A5KC76 as seed ortholog is 100%.

Group of orthologs #763. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.vivax:103

Q5KPF9              	100.00%		A5K8R3              	100.00%
Bootstrap support for Q5KPF9 as seed ortholog is 100%.
Bootstrap support for A5K8R3 as seed ortholog is 100%.

Group of orthologs #764. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.vivax:53

Q5KD66              	100.00%		A5K2U2              	100.00%
Q5KJH5              	5.24%		
Bootstrap support for Q5KD66 as seed ortholog is 87%.
Bootstrap support for A5K2U2 as seed ortholog is 91%.

Group of orthologs #765. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.vivax:102

P0CP64              	100.00%		A5K1Z1              	100.00%
Bootstrap support for P0CP64 as seed ortholog is 100%.
Bootstrap support for A5K1Z1 as seed ortholog is 100%.

Group of orthologs #766. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.vivax:102

P0CN24              	100.00%		A5K8K6              	100.00%
Bootstrap support for P0CN24 as seed ortholog is 100%.
Bootstrap support for A5K8K6 as seed ortholog is 100%.

Group of orthologs #767. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.vivax:102

Q5KB56              	100.00%		A5K8Q9              	100.00%
Bootstrap support for Q5KB56 as seed ortholog is 100%.
Bootstrap support for A5K8Q9 as seed ortholog is 100%.

Group of orthologs #768. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.vivax:102

Q5KEL1              	100.00%		A5K9F3              	100.00%
Bootstrap support for Q5KEL1 as seed ortholog is 100%.
Bootstrap support for A5K9F3 as seed ortholog is 100%.

Group of orthologs #769. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.vivax:102

Q5KIN8              	100.00%		A5K6W7              	100.00%
Bootstrap support for Q5KIN8 as seed ortholog is 100%.
Bootstrap support for A5K6W7 as seed ortholog is 100%.

Group of orthologs #770. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KFU9              	100.00%		A5K2V2              	100.00%
Bootstrap support for Q5KFU9 as seed ortholog is 100%.
Bootstrap support for A5K2V2 as seed ortholog is 100%.

Group of orthologs #771. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KDG7              	100.00%		A5K8Y7              	100.00%
Bootstrap support for Q5KDG7 as seed ortholog is 100%.
Bootstrap support for A5K8Y7 as seed ortholog is 100%.

Group of orthologs #772. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KIE8              	100.00%		A5K4S9              	100.00%
Bootstrap support for Q5KIE8 as seed ortholog is 100%.
Bootstrap support for A5K4S9 as seed ortholog is 100%.

Group of orthologs #773. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KHU5              	100.00%		A5K7X1              	100.00%
Bootstrap support for Q5KHU5 as seed ortholog is 100%.
Bootstrap support for A5K7X1 as seed ortholog is 100%.

Group of orthologs #774. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KD38              	100.00%		A5KCH0              	100.00%
Bootstrap support for Q5KD38 as seed ortholog is 100%.
Bootstrap support for A5KCH0 as seed ortholog is 100%.

Group of orthologs #775. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KP38              	100.00%		A5K635              	100.00%
Bootstrap support for Q5KP38 as seed ortholog is 100%.
Bootstrap support for A5K635 as seed ortholog is 100%.

Group of orthologs #776. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.vivax:101

Q5KP75              	100.00%		A5K8X7              	100.00%
Bootstrap support for Q5KP75 as seed ortholog is 68%.
Alternative seed ortholog is Q5KN62 (49 bits away from this cluster)
Bootstrap support for A5K8X7 as seed ortholog is 100%.

Group of orthologs #777. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.vivax:101

Q5KPG7              	100.00%		A5KEB0              	100.00%
Bootstrap support for Q5KPG7 as seed ortholog is 100%.
Bootstrap support for A5KEB0 as seed ortholog is 100%.

Group of orthologs #778. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:36 P.vivax:100

P0CS30              	100.00%		A5K0J3              	100.00%
Bootstrap support for P0CS30 as seed ortholog is 94%.
Bootstrap support for A5K0J3 as seed ortholog is 100%.

Group of orthologs #779. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:100

Q5K9U5              	100.00%		A5K869              	100.00%
Bootstrap support for Q5K9U5 as seed ortholog is 100%.
Bootstrap support for A5K869 as seed ortholog is 100%.

Group of orthologs #780. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:47

Q5K6X5              	100.00%		A5KC78              	100.00%
Bootstrap support for Q5K6X5 as seed ortholog is 100%.
Bootstrap support for A5KC78 as seed ortholog is 87%.

Group of orthologs #781. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:100

Q5KM24              	100.00%		A5K0S4              	100.00%
Bootstrap support for Q5KM24 as seed ortholog is 100%.
Bootstrap support for A5K0S4 as seed ortholog is 100%.

Group of orthologs #782. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:100

Q5KHN0              	100.00%		A5K5N3              	100.00%
Bootstrap support for Q5KHN0 as seed ortholog is 100%.
Bootstrap support for A5K5N3 as seed ortholog is 100%.

Group of orthologs #783. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:100

Q5KP19              	100.00%		A5K6D2              	100.00%
Bootstrap support for Q5KP19 as seed ortholog is 100%.
Bootstrap support for A5K6D2 as seed ortholog is 100%.

Group of orthologs #784. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.vivax:100

Q5KKU9              	100.00%		A5K9F5              	100.00%
Bootstrap support for Q5KKU9 as seed ortholog is 100%.
Bootstrap support for A5K9F5 as seed ortholog is 100%.

Group of orthologs #785. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.vivax:99

Q5K7D5              	100.00%		A5JZ61              	100.00%
Bootstrap support for Q5K7D5 as seed ortholog is 100%.
Bootstrap support for A5JZ61 as seed ortholog is 100%.

Group of orthologs #786. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.vivax:99

P0CO36              	100.00%		A5K339              	100.00%
Bootstrap support for P0CO36 as seed ortholog is 100%.
Bootstrap support for A5K339 as seed ortholog is 100%.

Group of orthologs #787. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.vivax:99

Q5KA81              	100.00%		A5K181              	100.00%
Bootstrap support for Q5KA81 as seed ortholog is 100%.
Bootstrap support for A5K181 as seed ortholog is 100%.

Group of orthologs #788. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.vivax:99

Q5KBQ8              	100.00%		A5K5J6              	100.00%
Bootstrap support for Q5KBQ8 as seed ortholog is 100%.
Bootstrap support for A5K5J6 as seed ortholog is 100%.

Group of orthologs #789. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.vivax:98

Q5KHZ3              	100.00%		A5K006              	100.00%
Bootstrap support for Q5KHZ3 as seed ortholog is 100%.
Bootstrap support for A5K006 as seed ortholog is 100%.

Group of orthologs #790. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:98

Q5KFG5              	100.00%		A5KCI3              	100.00%
Bootstrap support for Q5KFG5 as seed ortholog is 81%.
Bootstrap support for A5KCI3 as seed ortholog is 100%.

Group of orthologs #791. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.vivax:98

Q5KGK3              	100.00%		A5KC43              	100.00%
Bootstrap support for Q5KGK3 as seed ortholog is 100%.
Bootstrap support for A5KC43 as seed ortholog is 100%.

Group of orthologs #792. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.vivax:98

Q5KKU6              	100.00%		A5K8N7              	100.00%
Bootstrap support for Q5KKU6 as seed ortholog is 100%.
Bootstrap support for A5K8N7 as seed ortholog is 100%.

Group of orthologs #793. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:10 P.vivax:97

Q5KHU8              	100.00%		A5K2K1              	100.00%
                    	       		A5K1D1              	27.94%
Bootstrap support for Q5KHU8 as seed ortholog is 53%.
Alternative seed ortholog is P0CP46 (10 bits away from this cluster)
Bootstrap support for A5K2K1 as seed ortholog is 100%.

Group of orthologs #794. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:16

Q5KBU2              	100.00%		A5K1K6              	100.00%
Bootstrap support for Q5KBU2 as seed ortholog is 100%.
Bootstrap support for A5K1K6 as seed ortholog is 54%.
Alternative seed ortholog is A5K4Q6 (16 bits away from this cluster)

Group of orthologs #795. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:97

Q5KCK9              	100.00%		A5K5U7              	100.00%
Bootstrap support for Q5KCK9 as seed ortholog is 100%.
Bootstrap support for A5K5U7 as seed ortholog is 100%.

Group of orthologs #796. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:97

Q5KJ49              	100.00%		A5K385              	100.00%
Bootstrap support for Q5KJ49 as seed ortholog is 100%.
Bootstrap support for A5K385 as seed ortholog is 100%.

Group of orthologs #797. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:97

Q5KE19              	100.00%		A5K9S2              	100.00%
Bootstrap support for Q5KE19 as seed ortholog is 100%.
Bootstrap support for A5K9S2 as seed ortholog is 100%.

Group of orthologs #798. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:97

Q5KGM3              	100.00%		A5K8S9              	100.00%
Bootstrap support for Q5KGM3 as seed ortholog is 100%.
Bootstrap support for A5K8S9 as seed ortholog is 100%.

Group of orthologs #799. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.vivax:97

Q5KLG7              	100.00%		A5K6G7              	100.00%
Bootstrap support for Q5KLG7 as seed ortholog is 100%.
Bootstrap support for A5K6G7 as seed ortholog is 100%.

Group of orthologs #800. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

Q5KHB8              	100.00%		A5K0L9              	100.00%
Q5K7D6              	16.84%		
Bootstrap support for Q5KHB8 as seed ortholog is 100%.
Bootstrap support for A5K0L9 as seed ortholog is 100%.

Group of orthologs #801. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

Q5K864              	100.00%		A5JZ33              	100.00%
Bootstrap support for Q5K864 as seed ortholog is 100%.
Bootstrap support for A5JZ33 as seed ortholog is 100%.

Group of orthologs #802. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

Q5K9N0              	100.00%		A5K4H4              	100.00%
Bootstrap support for Q5K9N0 as seed ortholog is 100%.
Bootstrap support for A5K4H4 as seed ortholog is 100%.

Group of orthologs #803. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

Q5K909              	100.00%		A5K7H6              	100.00%
Bootstrap support for Q5K909 as seed ortholog is 100%.
Bootstrap support for A5K7H6 as seed ortholog is 100%.

Group of orthologs #804. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

P0CS95              	100.00%		A5K9N0              	100.00%
Bootstrap support for P0CS95 as seed ortholog is 100%.
Bootstrap support for A5K9N0 as seed ortholog is 100%.

Group of orthologs #805. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

Q5KL21              	100.00%		A5K8N1              	100.00%
Bootstrap support for Q5KL21 as seed ortholog is 100%.
Bootstrap support for A5K8N1 as seed ortholog is 100%.

Group of orthologs #806. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.vivax:96

Q5KMC3              	100.00%		A5KBD6              	100.00%
Bootstrap support for Q5KMC3 as seed ortholog is 100%.
Bootstrap support for A5KBD6 as seed ortholog is 100%.

Group of orthologs #807. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.vivax:95

P0CN78              	100.00%		A5JZ86              	100.00%
Bootstrap support for P0CN78 as seed ortholog is 100%.
Bootstrap support for A5JZ86 as seed ortholog is 100%.

Group of orthologs #808. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.vivax:95

P0CP90              	100.00%		A5K727              	100.00%
Bootstrap support for P0CP90 as seed ortholog is 100%.
Bootstrap support for A5K727 as seed ortholog is 100%.

Group of orthologs #809. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.vivax:95

P0CN66              	100.00%		A5K9Z0              	100.00%
Bootstrap support for P0CN66 as seed ortholog is 100%.
Bootstrap support for A5K9Z0 as seed ortholog is 100%.

Group of orthologs #810. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:94

Q5KAK9              	100.00%		A5K0D2              	100.00%
Q5KAL6              	43.36%		
Bootstrap support for Q5KAK9 as seed ortholog is 100%.
Bootstrap support for A5K0D2 as seed ortholog is 100%.

Group of orthologs #811. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:94

Q5KDF7              	100.00%		A5JZR8              	100.00%
Q5KN20              	11.09%		
Bootstrap support for Q5KDF7 as seed ortholog is 100%.
Bootstrap support for A5JZR8 as seed ortholog is 100%.

Group of orthologs #812. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:94

Q5K889              	100.00%		A5K8T3              	100.00%
Bootstrap support for Q5K889 as seed ortholog is 100%.
Bootstrap support for A5K8T3 as seed ortholog is 100%.

Group of orthologs #813. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:94

Q5KH86              	100.00%		A5K1H1              	100.00%
Bootstrap support for Q5KH86 as seed ortholog is 100%.
Bootstrap support for A5K1H1 as seed ortholog is 100%.

Group of orthologs #814. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:94

Q5KF90              	100.00%		A5K3Z2              	100.00%
Bootstrap support for Q5KF90 as seed ortholog is 100%.
Bootstrap support for A5K3Z2 as seed ortholog is 100%.

Group of orthologs #815. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.vivax:94

Q5KMS2              	100.00%		A5KA85              	100.00%
Bootstrap support for Q5KMS2 as seed ortholog is 100%.
Bootstrap support for A5KA85 as seed ortholog is 100%.

Group of orthologs #816. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:31

Q5K9S1              	100.00%		A5K2Z1              	100.00%
Bootstrap support for Q5K9S1 as seed ortholog is 100%.
Bootstrap support for A5K2Z1 as seed ortholog is 83%.

Group of orthologs #817. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:93

Q5KCV8              	100.00%		A5K1A7              	100.00%
Bootstrap support for Q5KCV8 as seed ortholog is 100%.
Bootstrap support for A5K1A7 as seed ortholog is 100%.

Group of orthologs #818. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:93

P0CN16              	100.00%		A5K7R0              	100.00%
Bootstrap support for P0CN16 as seed ortholog is 100%.
Bootstrap support for A5K7R0 as seed ortholog is 100%.

Group of orthologs #819. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:93

Q5KF63              	100.00%		A5K557              	100.00%
Bootstrap support for Q5KF63 as seed ortholog is 100%.
Bootstrap support for A5K557 as seed ortholog is 100%.

Group of orthologs #820. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:93

Q5KNY9              	100.00%		A5JZS4              	100.00%
Bootstrap support for Q5KNY9 as seed ortholog is 100%.
Bootstrap support for A5JZS4 as seed ortholog is 100%.

Group of orthologs #821. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:93

Q5KK55              	100.00%		A5K3I4              	100.00%
Bootstrap support for Q5KK55 as seed ortholog is 100%.
Bootstrap support for A5K3I4 as seed ortholog is 100%.

Group of orthologs #822. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.vivax:93

Q5KPF3              	100.00%		A5KC67              	100.00%
Bootstrap support for Q5KPF3 as seed ortholog is 100%.
Bootstrap support for A5KC67 as seed ortholog is 100%.

Group of orthologs #823. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.vivax:92

P0CP14              	100.00%		A5K2T0              	100.00%
Q5KCJ5              	14.83%		
Bootstrap support for P0CP14 as seed ortholog is 100%.
Bootstrap support for A5K2T0 as seed ortholog is 100%.

Group of orthologs #824. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.vivax:92

P0CO56              	100.00%		A5K413              	100.00%
Bootstrap support for P0CO56 as seed ortholog is 100%.
Bootstrap support for A5K413 as seed ortholog is 100%.

Group of orthologs #825. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.vivax:92

Q5K8W2              	100.00%		A5K5X4              	100.00%
Bootstrap support for Q5K8W2 as seed ortholog is 100%.
Bootstrap support for A5K5X4 as seed ortholog is 100%.

Group of orthologs #826. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.vivax:92

Q5KEW0              	100.00%		A5K528              	100.00%
Bootstrap support for Q5KEW0 as seed ortholog is 100%.
Bootstrap support for A5K528 as seed ortholog is 100%.

Group of orthologs #827. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.vivax:92

Q5KDJ5              	100.00%		A5KBT6              	100.00%
Bootstrap support for Q5KDJ5 as seed ortholog is 100%.
Bootstrap support for A5KBT6 as seed ortholog is 100%.

Group of orthologs #828. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:91

Q5KCT2              	100.00%		A5K365              	100.00%
                    	       		A5K0G0              	6.05%
Bootstrap support for Q5KCT2 as seed ortholog is 100%.
Bootstrap support for A5K365 as seed ortholog is 100%.

Group of orthologs #829. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:91

Q5K9N6              	100.00%		A5K0N5              	100.00%
Bootstrap support for Q5K9N6 as seed ortholog is 100%.
Bootstrap support for A5K0N5 as seed ortholog is 100%.

Group of orthologs #830. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:42

Q5KHU0              	100.00%		A5K0X2              	100.00%
Bootstrap support for Q5KHU0 as seed ortholog is 100%.
Bootstrap support for A5K0X2 as seed ortholog is 94%.

Group of orthologs #831. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:91

Q5KJW8              	100.00%		A5K1G5              	100.00%
Bootstrap support for Q5KJW8 as seed ortholog is 100%.
Bootstrap support for A5K1G5 as seed ortholog is 100%.

Group of orthologs #832. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:91

Q5KMH2              	100.00%		A5K0M4              	100.00%
Bootstrap support for Q5KMH2 as seed ortholog is 100%.
Bootstrap support for A5K0M4 as seed ortholog is 100%.

Group of orthologs #833. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:91

Q5KP11              	100.00%		A5K494              	100.00%
Bootstrap support for Q5KP11 as seed ortholog is 100%.
Bootstrap support for A5K494 as seed ortholog is 100%.

Group of orthologs #834. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.vivax:91

Q5KJ58              	100.00%		A5KDW5              	100.00%
Bootstrap support for Q5KJ58 as seed ortholog is 100%.
Bootstrap support for A5KDW5 as seed ortholog is 100%.

Group of orthologs #835. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.vivax:90

Q5KLG3              	100.00%		A5K8T9              	100.00%
Bootstrap support for Q5KLG3 as seed ortholog is 100%.
Bootstrap support for A5K8T9 as seed ortholog is 100%.

Group of orthologs #836. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.vivax:90

Q5KMY4              	100.00%		A5KBC4              	100.00%
Bootstrap support for Q5KMY4 as seed ortholog is 100%.
Bootstrap support for A5KBC4 as seed ortholog is 100%.

Group of orthologs #837. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.vivax:89

Q5KGM8              	100.00%		A5K826              	100.00%
Bootstrap support for Q5KGM8 as seed ortholog is 100%.
Bootstrap support for A5K826 as seed ortholog is 100%.

Group of orthologs #838. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.vivax:89

Q5KIF8              	100.00%		A5KE08              	100.00%
Bootstrap support for Q5KIF8 as seed ortholog is 100%.
Bootstrap support for A5KE08 as seed ortholog is 100%.

Group of orthologs #839. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.vivax:88

Q5K7W3              	100.00%		A5K3G9              	100.00%
Bootstrap support for Q5K7W3 as seed ortholog is 100%.
Bootstrap support for A5K3G9 as seed ortholog is 100%.

Group of orthologs #840. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:32 P.vivax:88

Q5KAK1              	100.00%		A5K9D3              	100.00%
Bootstrap support for Q5KAK1 as seed ortholog is 54%.
Alternative seed ortholog is Q5KM70 (32 bits away from this cluster)
Bootstrap support for A5K9D3 as seed ortholog is 100%.

Group of orthologs #841. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.vivax:88

Q5KDN1              	100.00%		A5K7Y0              	100.00%
Bootstrap support for Q5KDN1 as seed ortholog is 100%.
Bootstrap support for A5K7Y0 as seed ortholog is 100%.

Group of orthologs #842. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.vivax:88

Q5KH59              	100.00%		A5K7U8              	100.00%
Bootstrap support for Q5KH59 as seed ortholog is 100%.
Bootstrap support for A5K7U8 as seed ortholog is 100%.

Group of orthologs #843. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.vivax:88

Q5KL47              	100.00%		A5KCE3              	100.00%
Bootstrap support for Q5KL47 as seed ortholog is 100%.
Bootstrap support for A5KCE3 as seed ortholog is 100%.

Group of orthologs #844. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.vivax:87

Q5KAW2              	100.00%		A5K176              	100.00%
Q5KIG3              	13.56%		
Bootstrap support for Q5KAW2 as seed ortholog is 100%.
Bootstrap support for A5K176 as seed ortholog is 100%.

Group of orthologs #845. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.vivax:87

Q5KKF7              	100.00%		A5K9C5              	100.00%
Q5KPE4              	12.99%		
Bootstrap support for Q5KKF7 as seed ortholog is 100%.
Bootstrap support for A5K9C5 as seed ortholog is 100%.

Group of orthologs #846. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.vivax:87

Q5K8A6              	100.00%		A5K049              	100.00%
Bootstrap support for Q5K8A6 as seed ortholog is 100%.
Bootstrap support for A5K049 as seed ortholog is 100%.

Group of orthologs #847. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.vivax:87

P0CP72              	100.00%		A5KA87              	100.00%
Bootstrap support for P0CP72 as seed ortholog is 100%.
Bootstrap support for A5KA87 as seed ortholog is 100%.

Group of orthologs #848. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.vivax:86

Q5KEC0              	100.00%		A5K2K8              	100.00%
Bootstrap support for Q5KEC0 as seed ortholog is 100%.
Bootstrap support for A5K2K8 as seed ortholog is 100%.

Group of orthologs #849. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.vivax:86

Q5KBR9              	100.00%		A5KAM4              	100.00%
Bootstrap support for Q5KBR9 as seed ortholog is 100%.
Bootstrap support for A5KAM4 as seed ortholog is 100%.

Group of orthologs #850. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.vivax:86

Q5KM60              	100.00%		A5K2T1              	100.00%
Bootstrap support for Q5KM60 as seed ortholog is 100%.
Bootstrap support for A5K2T1 as seed ortholog is 100%.

Group of orthologs #851. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.vivax:86

Q5KFR0              	100.00%		A5K9B9              	100.00%
Bootstrap support for Q5KFR0 as seed ortholog is 100%.
Bootstrap support for A5K9B9 as seed ortholog is 100%.

Group of orthologs #852. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.vivax:85

Q5KDL9              	100.00%		A5K221              	100.00%
Q5KDR0              	40.84%		A5K2Y6              	30.53%
                    	       		A5K2Y9              	29.58%
Bootstrap support for Q5KDL9 as seed ortholog is 100%.
Bootstrap support for A5K221 as seed ortholog is 100%.

Group of orthologs #853. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.vivax:85

Q5KF49              	100.00%		A5KB11              	100.00%
                    	       		A5K960              	18.99%
Bootstrap support for Q5KF49 as seed ortholog is 100%.
Bootstrap support for A5KB11 as seed ortholog is 100%.

Group of orthologs #854. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.vivax:85

P0CO38              	100.00%		A5K4A4              	100.00%
Bootstrap support for P0CO38 as seed ortholog is 100%.
Bootstrap support for A5K4A4 as seed ortholog is 100%.

Group of orthologs #855. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.vivax:85

Q5KDS7              	100.00%		A5JZ82              	100.00%
Bootstrap support for Q5KDS7 as seed ortholog is 100%.
Bootstrap support for A5JZ82 as seed ortholog is 100%.

Group of orthologs #856. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.vivax:85

P0CO84              	100.00%		A5K6P8              	100.00%
Bootstrap support for P0CO84 as seed ortholog is 82%.
Bootstrap support for A5K6P8 as seed ortholog is 100%.

Group of orthologs #857. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.vivax:85

Q5KDI4              	100.00%		A5K5T0              	100.00%
Bootstrap support for Q5KDI4 as seed ortholog is 100%.
Bootstrap support for A5K5T0 as seed ortholog is 100%.

Group of orthologs #858. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:84

Q5K762              	100.00%		A5K3Y5              	100.00%
Bootstrap support for Q5K762 as seed ortholog is 100%.
Bootstrap support for A5K3Y5 as seed ortholog is 100%.

Group of orthologs #859. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:84

Q5K7B2              	100.00%		A5K4Y8              	100.00%
Bootstrap support for Q5K7B2 as seed ortholog is 100%.
Bootstrap support for A5K4Y8 as seed ortholog is 100%.

Group of orthologs #860. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:84

Q5KFN4              	100.00%		A5JZL5              	100.00%
Bootstrap support for Q5KFN4 as seed ortholog is 100%.
Bootstrap support for A5JZL5 as seed ortholog is 100%.

Group of orthologs #861. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:84

Q5KCV9              	100.00%		A5K9R1              	100.00%
Bootstrap support for Q5KCV9 as seed ortholog is 100%.
Bootstrap support for A5K9R1 as seed ortholog is 100%.

Group of orthologs #862. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:84

Q5KIG9              	100.00%		A5K640              	100.00%
Bootstrap support for Q5KIG9 as seed ortholog is 100%.
Bootstrap support for A5K640 as seed ortholog is 100%.

Group of orthologs #863. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:10

Q5KEP7              	100.00%		A5KAC0              	100.00%
Bootstrap support for Q5KEP7 as seed ortholog is 100%.
Bootstrap support for A5KAC0 as seed ortholog is 63%.
Alternative seed ortholog is A5K534 (10 bits away from this cluster)

Group of orthologs #864. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.vivax:84

Q5KGI2              	100.00%		A5KCE6              	100.00%
Bootstrap support for Q5KGI2 as seed ortholog is 100%.
Bootstrap support for A5KCE6 as seed ortholog is 100%.

Group of orthologs #865. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.vivax:83

Q5K8L2              	100.00%		A5K293              	100.00%
Bootstrap support for Q5K8L2 as seed ortholog is 69%.
Alternative seed ortholog is Q5KML8 (19 bits away from this cluster)
Bootstrap support for A5K293 as seed ortholog is 100%.

Group of orthologs #866. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.vivax:83

Q5KGY5              	100.00%		A5K124              	100.00%
Bootstrap support for Q5KGY5 as seed ortholog is 100%.
Bootstrap support for A5K124 as seed ortholog is 100%.

Group of orthologs #867. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.vivax:83

Q5KB61              	100.00%		A5K7J0              	100.00%
Bootstrap support for Q5KB61 as seed ortholog is 100%.
Bootstrap support for A5K7J0 as seed ortholog is 100%.

Group of orthologs #868. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.vivax:83

Q5KL57              	100.00%		A5JZ64              	100.00%
Bootstrap support for Q5KL57 as seed ortholog is 100%.
Bootstrap support for A5JZ64 as seed ortholog is 100%.

Group of orthologs #869. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.vivax:83

Q5KGT1              	100.00%		A5K396              	100.00%
Bootstrap support for Q5KGT1 as seed ortholog is 100%.
Bootstrap support for A5K396 as seed ortholog is 100%.

Group of orthologs #870. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.vivax:83

Q5KIF5              	100.00%		A5K7M6              	100.00%
Bootstrap support for Q5KIF5 as seed ortholog is 100%.
Bootstrap support for A5K7M6 as seed ortholog is 100%.

Group of orthologs #871. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.vivax:83

Q5KMF3              	100.00%		A5K4C2              	100.00%
Bootstrap support for Q5KMF3 as seed ortholog is 100%.
Bootstrap support for A5K4C2 as seed ortholog is 100%.

Group of orthologs #872. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.vivax:82

Q5KLM7              	100.00%		A5KB62              	100.00%
                    	       		A5K1R6              	7.72%
Bootstrap support for Q5KLM7 as seed ortholog is 100%.
Bootstrap support for A5KB62 as seed ortholog is 100%.

Group of orthologs #873. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.vivax:82

Q5KAL7              	100.00%		A5K8N9              	100.00%
Bootstrap support for Q5KAL7 as seed ortholog is 100%.
Bootstrap support for A5K8N9 as seed ortholog is 100%.

Group of orthologs #874. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.vivax:82

Q5KIC8              	100.00%		A5K5I7              	100.00%
Bootstrap support for Q5KIC8 as seed ortholog is 100%.
Bootstrap support for A5K5I7 as seed ortholog is 100%.

Group of orthologs #875. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.vivax:82

Q5KJX3              	100.00%		A5K854              	100.00%
Bootstrap support for Q5KJX3 as seed ortholog is 100%.
Bootstrap support for A5K854 as seed ortholog is 100%.

Group of orthologs #876. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.vivax:81

Q5K9E5              	100.00%		A5K4Q7              	100.00%
Bootstrap support for Q5K9E5 as seed ortholog is 100%.
Bootstrap support for A5K4Q7 as seed ortholog is 100%.

Group of orthologs #877. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.vivax:81

Q5KEX5              	100.00%		A5K4R5              	100.00%
Bootstrap support for Q5KEX5 as seed ortholog is 100%.
Bootstrap support for A5K4R5 as seed ortholog is 100%.

Group of orthologs #878. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.vivax:81

Q5KBD5              	100.00%		A5K8D9              	100.00%
Bootstrap support for Q5KBD5 as seed ortholog is 100%.
Bootstrap support for A5K8D9 as seed ortholog is 100%.

Group of orthologs #879. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.vivax:81

Q5KNI7              	100.00%		A5K457              	100.00%
Bootstrap support for Q5KNI7 as seed ortholog is 100%.
Bootstrap support for A5K457 as seed ortholog is 100%.

Group of orthologs #880. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.vivax:81

Q5KPH1              	100.00%		A5K3L9              	100.00%
Bootstrap support for Q5KPH1 as seed ortholog is 100%.
Bootstrap support for A5K3L9 as seed ortholog is 100%.

Group of orthologs #881. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.vivax:80

Q5KAB9              	100.00%		A5K0T3              	100.00%
Bootstrap support for Q5KAB9 as seed ortholog is 100%.
Bootstrap support for A5K0T3 as seed ortholog is 100%.

Group of orthologs #882. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.vivax:80

Q5KHJ3              	100.00%		A5K3E2              	100.00%
Bootstrap support for Q5KHJ3 as seed ortholog is 100%.
Bootstrap support for A5K3E2 as seed ortholog is 100%.

Group of orthologs #883. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.vivax:80

Q5KB06              	100.00%		A5KDU0              	100.00%
Bootstrap support for Q5KB06 as seed ortholog is 100%.
Bootstrap support for A5KDU0 as seed ortholog is 100%.

Group of orthologs #884. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.vivax:80

Q5KNT2              	100.00%		A5K5F8              	100.00%
Bootstrap support for Q5KNT2 as seed ortholog is 96%.
Bootstrap support for A5K5F8 as seed ortholog is 100%.

Group of orthologs #885. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.vivax:79

P0CO24              	100.00%		A5K0D1              	100.00%
                    	       		A5K5T1              	100.00%
Bootstrap support for P0CO24 as seed ortholog is 100%.
Bootstrap support for A5K0D1 as seed ortholog is 100%.
Bootstrap support for A5K5T1 as seed ortholog is 100%.

Group of orthologs #886. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.vivax:79

Q5KHA3              	100.00%		A5K7W3              	100.00%
Bootstrap support for Q5KHA3 as seed ortholog is 100%.
Bootstrap support for A5K7W3 as seed ortholog is 100%.

Group of orthologs #887. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.vivax:78

P0CS44              	100.00%		A5K9P7              	100.00%
Bootstrap support for P0CS44 as seed ortholog is 100%.
Bootstrap support for A5K9P7 as seed ortholog is 100%.

Group of orthologs #888. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.vivax:78

Q5KKD6              	100.00%		A5K2G5              	100.00%
Bootstrap support for Q5KKD6 as seed ortholog is 100%.
Bootstrap support for A5K2G5 as seed ortholog is 100%.

Group of orthologs #889. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.vivax:78

Q5KEF1              	100.00%		A5KBL4              	100.00%
Bootstrap support for Q5KEF1 as seed ortholog is 100%.
Bootstrap support for A5KBL4 as seed ortholog is 100%.

Group of orthologs #890. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.vivax:78

Q5KN44              	100.00%		A5K7M2              	100.00%
Bootstrap support for Q5KN44 as seed ortholog is 100%.
Bootstrap support for A5K7M2 as seed ortholog is 100%.

Group of orthologs #891. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.vivax:78

Q5KLB1              	100.00%		A5K9S4              	100.00%
Bootstrap support for Q5KLB1 as seed ortholog is 100%.
Bootstrap support for A5K9S4 as seed ortholog is 100%.

Group of orthologs #892. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.vivax:77

P0CP06              	100.00%		A5K252              	100.00%
Bootstrap support for P0CP06 as seed ortholog is 100%.
Bootstrap support for A5K252 as seed ortholog is 100%.

Group of orthologs #893. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.vivax:77

P0CR96              	100.00%		A5K2U1              	100.00%
Bootstrap support for P0CR96 as seed ortholog is 100%.
Bootstrap support for A5K2U1 as seed ortholog is 100%.

Group of orthologs #894. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.vivax:77

Q5KPI6              	100.00%		A5K0Q2              	100.00%
Bootstrap support for Q5KPI6 as seed ortholog is 100%.
Bootstrap support for A5K0Q2 as seed ortholog is 100%.

Group of orthologs #895. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.vivax:77

Q5KKE3              	100.00%		A5K6X9              	100.00%
Bootstrap support for Q5KKE3 as seed ortholog is 100%.
Bootstrap support for A5K6X9 as seed ortholog is 100%.

Group of orthologs #896. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.vivax:77

Q5KLP4              	100.00%		A5K974              	100.00%
Bootstrap support for Q5KLP4 as seed ortholog is 100%.
Bootstrap support for A5K974 as seed ortholog is 100%.

Group of orthologs #897. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.vivax:77

Q5KP79              	100.00%		A5K7V5              	100.00%
Bootstrap support for Q5KP79 as seed ortholog is 100%.
Bootstrap support for A5K7V5 as seed ortholog is 100%.

Group of orthologs #898. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.vivax:76

P0CS68              	100.00%		A5JZK1              	100.00%
Bootstrap support for P0CS68 as seed ortholog is 100%.
Bootstrap support for A5JZK1 as seed ortholog is 100%.

Group of orthologs #899. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.vivax:76

P0CM06              	100.00%		A5K2M0              	100.00%
Bootstrap support for P0CM06 as seed ortholog is 100%.
Bootstrap support for A5K2M0 as seed ortholog is 100%.

Group of orthologs #900. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.vivax:76

P0CR24              	100.00%		A5K2Y8              	100.00%
Bootstrap support for P0CR24 as seed ortholog is 100%.
Bootstrap support for A5K2Y8 as seed ortholog is 100%.

Group of orthologs #901. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.vivax:76

Q5KCK8              	100.00%		A5K4T5              	100.00%
Bootstrap support for Q5KCK8 as seed ortholog is 100%.
Bootstrap support for A5K4T5 as seed ortholog is 100%.

Group of orthologs #902. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.vivax:76

Q5KAA6              	100.00%		A5K7W9              	100.00%
Bootstrap support for Q5KAA6 as seed ortholog is 100%.
Bootstrap support for A5K7W9 as seed ortholog is 100%.

Group of orthologs #903. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.vivax:76

Q5KF95              	100.00%		A5K9J5              	100.00%
Bootstrap support for Q5KF95 as seed ortholog is 100%.
Bootstrap support for A5K9J5 as seed ortholog is 100%.

Group of orthologs #904. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.vivax:76

Q5KQ14              	100.00%		A5K354              	100.00%
Bootstrap support for Q5KQ14 as seed ortholog is 88%.
Bootstrap support for A5K354 as seed ortholog is 100%.

Group of orthologs #905. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.vivax:75

Q5KF12              	100.00%		A5KCK1              	100.00%
Bootstrap support for Q5KF12 as seed ortholog is 100%.
Bootstrap support for A5KCK1 as seed ortholog is 100%.

Group of orthologs #906. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.vivax:75

Q5KL85              	100.00%		A5KAY6              	100.00%
Bootstrap support for Q5KL85 as seed ortholog is 100%.
Bootstrap support for A5KAY6 as seed ortholog is 100%.

Group of orthologs #907. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:0

Q5K8A5              	100.00%		A5K6Q5              	100.00%
                    	       		A5K190              	7.13%
Bootstrap support for Q5K8A5 as seed ortholog is 100%.
Bootstrap support for A5K6Q5 as seed ortholog is 70%.
Alternative seed ortholog is A5K327 (0 bits away from this cluster)

Group of orthologs #908. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:17

Q5KA73              	100.00%		A5K9I6              	100.00%
                    	       		A5KE64              	12.57%
Bootstrap support for Q5KA73 as seed ortholog is 100%.
Bootstrap support for A5K9I6 as seed ortholog is 83%.

Group of orthologs #909. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:74

Q5K9C2              	100.00%		A5K2C6              	100.00%
Bootstrap support for Q5K9C2 as seed ortholog is 100%.
Bootstrap support for A5K2C6 as seed ortholog is 100%.

Group of orthologs #910. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:74

P0CR54              	100.00%		A5K8T8              	100.00%
Bootstrap support for P0CR54 as seed ortholog is 100%.
Bootstrap support for A5K8T8 as seed ortholog is 100%.

Group of orthologs #911. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:74

P0CR68              	100.00%		A5KDZ7              	100.00%
Bootstrap support for P0CR68 as seed ortholog is 100%.
Bootstrap support for A5KDZ7 as seed ortholog is 100%.

Group of orthologs #912. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.vivax:74

Q5KFM1              	100.00%		A5K8J5              	100.00%
Bootstrap support for Q5KFM1 as seed ortholog is 100%.
Bootstrap support for A5K8J5 as seed ortholog is 100%.

Group of orthologs #913. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.vivax:73

P0CS10              	100.00%		A5K4K4              	100.00%
Bootstrap support for P0CS10 as seed ortholog is 100%.
Bootstrap support for A5K4K4 as seed ortholog is 100%.

Group of orthologs #914. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.vivax:73

Q5KFA1              	100.00%		A5K2K9              	100.00%
Bootstrap support for Q5KFA1 as seed ortholog is 100%.
Bootstrap support for A5K2K9 as seed ortholog is 100%.

Group of orthologs #915. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.vivax:73

Q5KI51              	100.00%		A5K598              	100.00%
Bootstrap support for Q5KI51 as seed ortholog is 100%.
Bootstrap support for A5K598 as seed ortholog is 100%.

Group of orthologs #916. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.vivax:73

Q5KIV2              	100.00%		A5KC73              	100.00%
Bootstrap support for Q5KIV2 as seed ortholog is 100%.
Bootstrap support for A5KC73 as seed ortholog is 100%.

Group of orthologs #917. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.vivax:72

Q5KKD1              	100.00%		A5K6K0              	100.00%
                    	       		A5K7N1              	7.04%
Bootstrap support for Q5KKD1 as seed ortholog is 100%.
Bootstrap support for A5K6K0 as seed ortholog is 100%.

Group of orthologs #918. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.vivax:72

Q5KC59              	100.00%		A5K427              	100.00%
Bootstrap support for Q5KC59 as seed ortholog is 100%.
Bootstrap support for A5K427 as seed ortholog is 100%.

Group of orthologs #919. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.vivax:72

Q5K7I7              	100.00%		A5KEB1              	100.00%
Bootstrap support for Q5K7I7 as seed ortholog is 100%.
Bootstrap support for A5KEB1 as seed ortholog is 100%.

Group of orthologs #920. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.vivax:71

Q5KLI5              	100.00%		A5JZ87              	100.00%
Bootstrap support for Q5KLI5 as seed ortholog is 100%.
Bootstrap support for A5JZ87 as seed ortholog is 100%.

Group of orthologs #921. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.vivax:71

Q5KLL0              	100.00%		A5K2L5              	100.00%
Bootstrap support for Q5KLL0 as seed ortholog is 100%.
Bootstrap support for A5K2L5 as seed ortholog is 100%.

Group of orthologs #922. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.vivax:71

Q5KLD3              	100.00%		A5K5X3              	100.00%
Bootstrap support for Q5KLD3 as seed ortholog is 100%.
Bootstrap support for A5K5X3 as seed ortholog is 100%.

Group of orthologs #923. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:70

Q5K719              	100.00%		A5JZS6              	100.00%
Bootstrap support for Q5K719 as seed ortholog is 100%.
Bootstrap support for A5JZS6 as seed ortholog is 100%.

Group of orthologs #924. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:70

Q5KAI3              	100.00%		A5K471              	100.00%
Bootstrap support for Q5KAI3 as seed ortholog is 100%.
Bootstrap support for A5K471 as seed ortholog is 100%.

Group of orthologs #925. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:70

Q5KKH4              	100.00%		A5K5G0              	100.00%
Bootstrap support for Q5KKH4 as seed ortholog is 100%.
Bootstrap support for A5K5G0 as seed ortholog is 100%.

Group of orthologs #926. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:70

Q5KLV4              	100.00%		A5K6L3              	100.00%
Bootstrap support for Q5KLV4 as seed ortholog is 100%.
Bootstrap support for A5K6L3 as seed ortholog is 100%.

Group of orthologs #927. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.vivax:70

Q5KN63              	100.00%		A5K5Q0              	100.00%
Bootstrap support for Q5KN63 as seed ortholog is 100%.
Bootstrap support for A5K5Q0 as seed ortholog is 100%.

Group of orthologs #928. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

Q5KK15              	100.00%		A5K166              	100.00%
Q5KIX8              	6.16%		
Bootstrap support for Q5KK15 as seed ortholog is 100%.
Bootstrap support for A5K166 as seed ortholog is 100%.

Group of orthologs #929. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

P0CO96              	100.00%		A5K2B7              	100.00%
Bootstrap support for P0CO96 as seed ortholog is 100%.
Bootstrap support for A5K2B7 as seed ortholog is 100%.

Group of orthologs #930. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

Q5K9X5              	100.00%		A5K6N3              	100.00%
Bootstrap support for Q5K9X5 as seed ortholog is 100%.
Bootstrap support for A5K6N3 as seed ortholog is 100%.

Group of orthologs #931. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

Q5KIK2              	100.00%		A5JZ62              	100.00%
Bootstrap support for Q5KIK2 as seed ortholog is 100%.
Bootstrap support for A5JZ62 as seed ortholog is 100%.

Group of orthologs #932. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

Q5K9V6              	100.00%		A5K8S2              	100.00%
Bootstrap support for Q5K9V6 as seed ortholog is 100%.
Bootstrap support for A5K8S2 as seed ortholog is 100%.

Group of orthologs #933. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

Q5KKY4              	100.00%		A5K1F0              	100.00%
Bootstrap support for Q5KKY4 as seed ortholog is 100%.
Bootstrap support for A5K1F0 as seed ortholog is 100%.

Group of orthologs #934. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.vivax:69

Q5KDZ6              	100.00%		A5K9K0              	100.00%
Bootstrap support for Q5KDZ6 as seed ortholog is 95%.
Bootstrap support for A5K9K0 as seed ortholog is 100%.

Group of orthologs #935. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.vivax:69

Q5KIB6              	100.00%		A5KE09              	100.00%
Bootstrap support for Q5KIB6 as seed ortholog is 100%.
Bootstrap support for A5KE09 as seed ortholog is 100%.

Group of orthologs #936. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.vivax:68

Q5KBG4              	100.00%		A5JZU8              	100.00%
Bootstrap support for Q5KBG4 as seed ortholog is 100%.
Bootstrap support for A5JZU8 as seed ortholog is 100%.

Group of orthologs #937. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.vivax:68

Q5KM67              	100.00%		A5JZW1              	100.00%
Bootstrap support for Q5KM67 as seed ortholog is 100%.
Bootstrap support for A5JZW1 as seed ortholog is 100%.

Group of orthologs #938. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.vivax:68

Q5KLI8              	100.00%		A5K5L8              	100.00%
Bootstrap support for Q5KLI8 as seed ortholog is 100%.
Bootstrap support for A5K5L8 as seed ortholog is 100%.

Group of orthologs #939. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.vivax:68

Q5KK45              	100.00%		A5K885              	100.00%
Bootstrap support for Q5KK45 as seed ortholog is 100%.
Bootstrap support for A5K885 as seed ortholog is 100%.

Group of orthologs #940. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.vivax:68

Q5KNR2              	100.00%		A5K588              	100.00%
Bootstrap support for Q5KNR2 as seed ortholog is 100%.
Bootstrap support for A5K588 as seed ortholog is 100%.

Group of orthologs #941. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.vivax:17

Q5KI30              	100.00%		A5KBN8              	100.00%
Q5KI56              	11.49%		
Bootstrap support for Q5KI30 as seed ortholog is 100%.
Bootstrap support for A5KBN8 as seed ortholog is 82%.

Group of orthologs #942. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.vivax:67

Q5K900              	100.00%		A5K0J1              	100.00%
Bootstrap support for Q5K900 as seed ortholog is 100%.
Bootstrap support for A5K0J1 as seed ortholog is 100%.

Group of orthologs #943. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.vivax:67

Q5KFH8              	100.00%		A5K2Q4              	100.00%
Bootstrap support for Q5KFH8 as seed ortholog is 100%.
Bootstrap support for A5K2Q4 as seed ortholog is 100%.

Group of orthologs #944. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.vivax:67

P0CM10              	100.00%		A5KC06              	100.00%
Bootstrap support for P0CM10 as seed ortholog is 100%.
Bootstrap support for A5KC06 as seed ortholog is 100%.

Group of orthologs #945. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.vivax:67

Q5KPJ5              	100.00%		A5K231              	100.00%
Bootstrap support for Q5KPJ5 as seed ortholog is 100%.
Bootstrap support for A5K231 as seed ortholog is 100%.

Group of orthologs #946. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.vivax:67

Q5KHV8              	100.00%		A5K988              	100.00%
Bootstrap support for Q5KHV8 as seed ortholog is 100%.
Bootstrap support for A5K988 as seed ortholog is 100%.

Group of orthologs #947. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.vivax:66

Q5KA20              	100.00%		A5K5M7              	100.00%
Bootstrap support for Q5KA20 as seed ortholog is 100%.
Bootstrap support for A5K5M7 as seed ortholog is 100%.

Group of orthologs #948. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.vivax:66

Q5KIT8              	100.00%		A5K0S1              	100.00%
Bootstrap support for Q5KIT8 as seed ortholog is 100%.
Bootstrap support for A5K0S1 as seed ortholog is 100%.

Group of orthologs #949. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.vivax:66

Q5KMZ6              	100.00%		A5K843              	100.00%
Bootstrap support for Q5KMZ6 as seed ortholog is 100%.
Bootstrap support for A5K843 as seed ortholog is 100%.

Group of orthologs #950. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.vivax:65

Q5KIA1              	100.00%		A5K0G4              	100.00%
Bootstrap support for Q5KIA1 as seed ortholog is 100%.
Bootstrap support for A5K0G4 as seed ortholog is 100%.

Group of orthologs #951. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.vivax:65

Q5KGR1              	100.00%		A5K610              	100.00%
Bootstrap support for Q5KGR1 as seed ortholog is 100%.
Bootstrap support for A5K610 as seed ortholog is 100%.

Group of orthologs #952. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.vivax:21

Q5KMK6              	100.00%		A5K177              	100.00%
Bootstrap support for Q5KMK6 as seed ortholog is 100%.
Bootstrap support for A5K177 as seed ortholog is 94%.

Group of orthologs #953. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.vivax:64

P0CN52              	100.00%		A5K5V3              	100.00%
Bootstrap support for P0CN52 as seed ortholog is 100%.
Bootstrap support for A5K5V3 as seed ortholog is 100%.

Group of orthologs #954. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.vivax:64

Q5KFF3              	100.00%		A5K9R2              	100.00%
Bootstrap support for Q5KFF3 as seed ortholog is 100%.
Bootstrap support for A5K9R2 as seed ortholog is 100%.

Group of orthologs #955. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.vivax:64

Q5KPM7              	100.00%		A5KC36              	100.00%
Bootstrap support for Q5KPM7 as seed ortholog is 100%.
Bootstrap support for A5KC36 as seed ortholog is 100%.

Group of orthologs #956. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.vivax:63

Q5KBL5              	100.00%		A5JZJ6              	100.00%
Bootstrap support for Q5KBL5 as seed ortholog is 73%.
Alternative seed ortholog is Q5KPX4 (15 bits away from this cluster)
Bootstrap support for A5JZJ6 as seed ortholog is 100%.

Group of orthologs #957. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.vivax:63

Q5KIE2              	100.00%		A5JZ91              	100.00%
Bootstrap support for Q5KIE2 as seed ortholog is 100%.
Bootstrap support for A5JZ91 as seed ortholog is 100%.

Group of orthologs #958. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.vivax:63

P0CR36              	100.00%		A5KAK1              	100.00%
Bootstrap support for P0CR36 as seed ortholog is 100%.
Bootstrap support for A5KAK1 as seed ortholog is 100%.

Group of orthologs #959. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.vivax:63

Q5KM81              	100.00%		A5K7D0              	100.00%
Bootstrap support for Q5KM81 as seed ortholog is 100%.
Bootstrap support for A5K7D0 as seed ortholog is 100%.

Group of orthologs #960. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.vivax:62

Q5K7S6              	100.00%		A5JZS9              	100.00%
Bootstrap support for Q5K7S6 as seed ortholog is 84%.
Bootstrap support for A5JZS9 as seed ortholog is 100%.

Group of orthologs #961. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.vivax:62

Q5K9C9              	100.00%		A5K4U3              	100.00%
Bootstrap support for Q5K9C9 as seed ortholog is 100%.
Bootstrap support for A5K4U3 as seed ortholog is 100%.

Group of orthologs #962. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.vivax:62

P0CR48              	100.00%		A5KBK2              	100.00%
Bootstrap support for P0CR48 as seed ortholog is 100%.
Bootstrap support for A5KBK2 as seed ortholog is 100%.

Group of orthologs #963. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.vivax:62

Q5KNL8              	100.00%		A5K1C9              	100.00%
Bootstrap support for Q5KNL8 as seed ortholog is 100%.
Bootstrap support for A5K1C9 as seed ortholog is 100%.

Group of orthologs #964. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.vivax:62

Q5KN27              	100.00%		A5KBT5              	100.00%
Bootstrap support for Q5KN27 as seed ortholog is 100%.
Bootstrap support for A5KBT5 as seed ortholog is 100%.

Group of orthologs #965. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:10 P.vivax:61

Q5KG84              	100.00%		A5K7T7              	100.00%
Q5KPC9              	12.40%		
Bootstrap support for Q5KG84 as seed ortholog is 53%.
Alternative seed ortholog is Q5KDH4 (10 bits away from this cluster)
Bootstrap support for A5K7T7 as seed ortholog is 100%.

Group of orthologs #966. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.vivax:61

P0CN70              	100.00%		A5K2Y3              	100.00%
Bootstrap support for P0CN70 as seed ortholog is 100%.
Bootstrap support for A5K2Y3 as seed ortholog is 100%.

Group of orthologs #967. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.vivax:61

Q5K8K6              	100.00%		A5K541              	100.00%
Bootstrap support for Q5K8K6 as seed ortholog is 100%.
Bootstrap support for A5K541 as seed ortholog is 100%.

Group of orthologs #968. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.vivax:61

Q5K788              	100.00%		A5KAH0              	100.00%
Bootstrap support for Q5K788 as seed ortholog is 100%.
Bootstrap support for A5KAH0 as seed ortholog is 100%.

Group of orthologs #969. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.vivax:5

Q5KGD0              	100.00%		A5K9D2              	100.00%
Bootstrap support for Q5KGD0 as seed ortholog is 100%.
Bootstrap support for A5K9D2 as seed ortholog is 54%.
Alternative seed ortholog is A5K7K2 (5 bits away from this cluster)

Group of orthologs #970. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.vivax:61

Q5KKV3              	100.00%		A5K5G6              	100.00%
Bootstrap support for Q5KKV3 as seed ortholog is 100%.
Bootstrap support for A5K5G6 as seed ortholog is 100%.

Group of orthologs #971. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.vivax:61

Q5KL07              	100.00%		A5K6X0              	100.00%
Bootstrap support for Q5KL07 as seed ortholog is 100%.
Bootstrap support for A5K6X0 as seed ortholog is 100%.

Group of orthologs #972. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.vivax:60

P0CP08              	100.00%		A5K0Y6              	100.00%
Bootstrap support for P0CP08 as seed ortholog is 100%.
Bootstrap support for A5K0Y6 as seed ortholog is 100%.

Group of orthologs #973. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.vivax:60

P0CR88              	100.00%		A5K2A6              	100.00%
Bootstrap support for P0CR88 as seed ortholog is 100%.
Bootstrap support for A5K2A6 as seed ortholog is 100%.

Group of orthologs #974. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.vivax:60

Q5KDR3              	100.00%		A5KBL5              	100.00%
Bootstrap support for Q5KDR3 as seed ortholog is 100%.
Bootstrap support for A5KBL5 as seed ortholog is 100%.

Group of orthologs #975. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:59

Q5KDB8              	100.00%		A5K8A0              	100.00%
Bootstrap support for Q5KDB8 as seed ortholog is 100%.
Bootstrap support for A5K8A0 as seed ortholog is 100%.

Group of orthologs #976. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:59

Q5KIV8              	100.00%		A5K3N3              	100.00%
Bootstrap support for Q5KIV8 as seed ortholog is 100%.
Bootstrap support for A5K3N3 as seed ortholog is 100%.

Group of orthologs #977. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:59

Q5KIP7              	100.00%		A5K5S4              	100.00%
Bootstrap support for Q5KIP7 as seed ortholog is 100%.
Bootstrap support for A5K5S4 as seed ortholog is 100%.

Group of orthologs #978. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:59

Q5KFL9              	100.00%		A5K9Q3              	100.00%
Bootstrap support for Q5KFL9 as seed ortholog is 100%.
Bootstrap support for A5K9Q3 as seed ortholog is 100%.

Group of orthologs #979. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.vivax:59

Q5KK46              	100.00%		A5KA63              	100.00%
Bootstrap support for Q5KK46 as seed ortholog is 100%.
Bootstrap support for A5KA63 as seed ortholog is 100%.

Group of orthologs #980. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.vivax:58

Q5KC40              	100.00%		A5K3T4              	100.00%
Bootstrap support for Q5KC40 as seed ortholog is 100%.
Bootstrap support for A5K3T4 as seed ortholog is 100%.

Group of orthologs #981. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.vivax:57

Q5KG85              	100.00%		A5KB10              	100.00%
Q5KG86              	63.83%		
Q5KMQ6              	6.55%		
Bootstrap support for Q5KG85 as seed ortholog is 100%.
Bootstrap support for A5KB10 as seed ortholog is 100%.

Group of orthologs #982. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.vivax:16

Q5K9G6              	100.00%		A5JZC8              	100.00%
Bootstrap support for Q5K9G6 as seed ortholog is 100%.
Bootstrap support for A5JZC8 as seed ortholog is 73%.
Alternative seed ortholog is A5K5J9 (16 bits away from this cluster)

Group of orthologs #983. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.vivax:57

Q5KQ41              	100.00%		A5JZD4              	100.00%
Bootstrap support for Q5KQ41 as seed ortholog is 100%.
Bootstrap support for A5JZD4 as seed ortholog is 100%.

Group of orthologs #984. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.vivax:57

Q5KM45              	100.00%		A5K3Y9              	100.00%
Bootstrap support for Q5KM45 as seed ortholog is 100%.
Bootstrap support for A5K3Y9 as seed ortholog is 100%.

Group of orthologs #985. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.vivax:16

F5HFW5              	100.00%		A5JZP1              	100.00%
Bootstrap support for F5HFW5 as seed ortholog is 100%.
Bootstrap support for A5JZP1 as seed ortholog is 67%.
Alternative seed ortholog is A5K7G5 (16 bits away from this cluster)

Group of orthologs #986. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.vivax:56

Q5K8B3              	100.00%		A5K4T6              	100.00%
Bootstrap support for Q5K8B3 as seed ortholog is 100%.
Bootstrap support for A5K4T6 as seed ortholog is 100%.

Group of orthologs #987. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.vivax:56

Q5KLS9              	100.00%		A5K209              	100.00%
Bootstrap support for Q5KLS9 as seed ortholog is 100%.
Bootstrap support for A5K209 as seed ortholog is 100%.

Group of orthologs #988. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.vivax:56

Q5KL91              	100.00%		A5K3B2              	100.00%
Bootstrap support for Q5KL91 as seed ortholog is 100%.
Bootstrap support for A5K3B2 as seed ortholog is 100%.

Group of orthologs #989. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.vivax:55

Q5KC84              	100.00%		A5KA12              	100.00%
Bootstrap support for Q5KC84 as seed ortholog is 100%.
Bootstrap support for A5KA12 as seed ortholog is 100%.

Group of orthologs #990. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.vivax:55

Q5KIY1              	100.00%		A5KB80              	100.00%
Bootstrap support for Q5KIY1 as seed ortholog is 100%.
Bootstrap support for A5KB80 as seed ortholog is 100%.

Group of orthologs #991. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

Q5K7A1              	100.00%		A5KBL1              	100.00%
Q5KI02              	20.59%		A5K0W8              	10.50%
Q5KHX6              	20.59%		
Q5K886              	16.68%		
Q5KPG5              	16.03%		
Q5KNP3              	15.71%		
Q5KKU1              	15.17%		
Q5K875              	15.06%		
Q5K7L4              	14.30%		
Q5KHF5              	14.30%		
Q5KQ74              	14.19%		
Q5KA87              	13.98%		
Q5KC55              	13.65%		
Q5KBM4              	13.54%		
Q5K7F5              	13.22%		
Q5K9T2              	12.46%		
Q5KC83              	12.03%		
Q5KFK2              	12.03%		
Q5K9A2              	11.81%		
Q5KFK1              	11.70%		
Q5KNB7              	11.16%		
Q5KER3              	10.73%		
Q5KN93              	10.62%		
Q5KB76              	10.40%		
Q5KBE7              	10.29%		
Q5KFM8              	10.29%		
Q5KKS6              	10.08%		
Q5K928              	9.21%		
Q5K9X4              	8.34%		
Q5KEM4              	7.91%		
Q5KH82              	7.58%		
Q5KG03              	6.93%		
Q5KAT7              	6.93%		
Q5KEI1              	5.96%		
Q5KA09              	5.53%		
Bootstrap support for Q5K7A1 as seed ortholog is 100%.
Bootstrap support for A5KBL1 as seed ortholog is 100%.

Group of orthologs #992. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

Q5KA76              	100.00%		A5K509              	100.00%
Bootstrap support for Q5KA76 as seed ortholog is 100%.
Bootstrap support for A5K509 as seed ortholog is 100%.

Group of orthologs #993. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

P0CN88              	100.00%		A5KAE2              	100.00%
Bootstrap support for P0CN88 as seed ortholog is 100%.
Bootstrap support for A5KAE2 as seed ortholog is 100%.

Group of orthologs #994. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

Q5KE91              	100.00%		A5K5L9              	100.00%
Bootstrap support for Q5KE91 as seed ortholog is 100%.
Bootstrap support for A5K5L9 as seed ortholog is 100%.

Group of orthologs #995. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

Q5KEG9              	100.00%		A5K7C0              	100.00%
Bootstrap support for Q5KEG9 as seed ortholog is 100%.
Bootstrap support for A5K7C0 as seed ortholog is 100%.

Group of orthologs #996. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

Q5KEC3              	100.00%		A5K9S5              	100.00%
Bootstrap support for Q5KEC3 as seed ortholog is 100%.
Bootstrap support for A5K9S5 as seed ortholog is 100%.

Group of orthologs #997. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.vivax:54

Q5KM48              	100.00%		A5KBY1              	100.00%
Bootstrap support for Q5KM48 as seed ortholog is 100%.
Bootstrap support for A5KBY1 as seed ortholog is 100%.

Group of orthologs #998. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.vivax:52

Q5KCD7              	100.00%		A5K3S1              	100.00%
Bootstrap support for Q5KCD7 as seed ortholog is 100%.
Bootstrap support for A5K3S1 as seed ortholog is 100%.

Group of orthologs #999. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.vivax:52

Q5KLR0              	100.00%		A5JZJ9              	100.00%
Bootstrap support for Q5KLR0 as seed ortholog is 100%.
Bootstrap support for A5JZJ9 as seed ortholog is 100%.

Group of orthologs #1000. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.vivax:52

Q5KJJ6              	100.00%		A5K7D7              	100.00%
Bootstrap support for Q5KJJ6 as seed ortholog is 100%.
Bootstrap support for A5K7D7 as seed ortholog is 100%.

Group of orthologs #1001. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.vivax:52

Q5KCT7              	100.00%		A5KE34              	100.00%
Bootstrap support for Q5KCT7 as seed ortholog is 100%.
Bootstrap support for A5KE34 as seed ortholog is 100%.

Group of orthologs #1002. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.vivax:51

Q5K8X7              	100.00%		A5JZ24              	100.00%
Bootstrap support for Q5K8X7 as seed ortholog is 100%.
Bootstrap support for A5JZ24 as seed ortholog is 100%.

Group of orthologs #1003. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.vivax:50

Q5KNX9              	100.00%		A5K160              	100.00%
Bootstrap support for Q5KNX9 as seed ortholog is 100%.
Bootstrap support for A5K160 as seed ortholog is 100%.

Group of orthologs #1004. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.vivax:48

P0CO30              	100.00%		A5K4U4              	100.00%
Bootstrap support for P0CO30 as seed ortholog is 100%.
Bootstrap support for A5K4U4 as seed ortholog is 100%.

Group of orthologs #1005. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.vivax:48

Q5K823              	100.00%		A5K4I8              	100.00%
Bootstrap support for Q5K823 as seed ortholog is 100%.
Bootstrap support for A5K4I8 as seed ortholog is 100%.

Group of orthologs #1006. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.vivax:47

Q5KE80              	100.00%		A5K499              	100.00%
Bootstrap support for Q5KE80 as seed ortholog is 100%.
Bootstrap support for A5K499 as seed ortholog is 100%.

Group of orthologs #1007. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.vivax:47

Q5KKU7              	100.00%		A5K8D4              	100.00%
Bootstrap support for Q5KKU7 as seed ortholog is 100%.
Bootstrap support for A5K8D4 as seed ortholog is 100%.

Group of orthologs #1008. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.vivax:46

Q5KFQ5              	100.00%		A5K4K1              	100.00%
Bootstrap support for Q5KFQ5 as seed ortholog is 100%.
Bootstrap support for A5K4K1 as seed ortholog is 100%.

Group of orthologs #1009. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.vivax:46

Q5KMG9              	100.00%		A5K248              	100.00%
Bootstrap support for Q5KMG9 as seed ortholog is 100%.
Bootstrap support for A5K248 as seed ortholog is 100%.

Group of orthologs #1010. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.vivax:46

Q5KLA4              	100.00%		A5K5T5              	100.00%
Bootstrap support for Q5KLA4 as seed ortholog is 100%.
Bootstrap support for A5K5T5 as seed ortholog is 100%.

Group of orthologs #1011. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.vivax:46

Q5KN12              	100.00%		A5K6Z9              	100.00%
Bootstrap support for Q5KN12 as seed ortholog is 100%.
Bootstrap support for A5K6Z9 as seed ortholog is 100%.

Group of orthologs #1012. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.vivax:44

Q5K9Q9              	100.00%		A5K194              	100.00%
Bootstrap support for Q5K9Q9 as seed ortholog is 100%.
Bootstrap support for A5K194 as seed ortholog is 100%.

Group of orthologs #1013. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.vivax:44

Q5KPR9              	100.00%		A5K0P6              	100.00%
Bootstrap support for Q5KPR9 as seed ortholog is 100%.
Bootstrap support for A5K0P6 as seed ortholog is 100%.

Group of orthologs #1014. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.vivax:44

Q5KDU9              	100.00%		A5KBF1              	100.00%
Bootstrap support for Q5KDU9 as seed ortholog is 100%.
Bootstrap support for A5KBF1 as seed ortholog is 100%.

Group of orthologs #1015. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.vivax:42

P0CP04              	100.00%		A5K840              	100.00%
Bootstrap support for P0CP04 as seed ortholog is 100%.
Bootstrap support for A5K840 as seed ortholog is 100%.

Group of orthologs #1016. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.vivax:42

Q5K973              	100.00%		A5K6M6              	100.00%
Bootstrap support for Q5K973 as seed ortholog is 100%.
Bootstrap support for A5K6M6 as seed ortholog is 100%.

Group of orthologs #1017. Best score 41 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.vivax:41

Q5KJV4              	100.00%		A5K599              	100.00%
                    	       		A5K837              	9.35%
Bootstrap support for Q5KJV4 as seed ortholog is 100%.
Bootstrap support for A5K599 as seed ortholog is 100%.

Group of orthologs #1018. Best score 41 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.vivax:41

P0CN54              	100.00%		A5KBB9              	100.00%
Bootstrap support for P0CN54 as seed ortholog is 100%.
Bootstrap support for A5KBB9 as seed ortholog is 100%.