###################################
1893 groups of orthologs
2044 in-paralogs from C.neoformans
2195 in-paralogs from P.pallidum
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 4415 bits
Score difference with first non-orthologous sequence - C.neoformans:4415 P.pallidum:4415

Q5KFR9              	100.00%		D3BP40              	100.00%
Bootstrap support for Q5KFR9 as seed ortholog is 100%.
Bootstrap support for D3BP40 as seed ortholog is 100%.

Group of orthologs #2. Best score 3147 bits
Score difference with first non-orthologous sequence - C.neoformans:3147 P.pallidum:3147

Q5KPW2              	100.00%		D3BFM8              	100.00%
Bootstrap support for Q5KPW2 as seed ortholog is 100%.
Bootstrap support for D3BFM8 as seed ortholog is 100%.

Group of orthologs #3. Best score 2177 bits
Score difference with first non-orthologous sequence - C.neoformans:2177 P.pallidum:2177

Q5KNM2              	100.00%		D3BB35              	100.00%
Bootstrap support for Q5KNM2 as seed ortholog is 100%.
Bootstrap support for D3BB35 as seed ortholog is 100%.

Group of orthologs #4. Best score 2090 bits
Score difference with first non-orthologous sequence - C.neoformans:2090 P.pallidum:2090

Q5KAK5              	100.00%		D3B0N0              	100.00%
Bootstrap support for Q5KAK5 as seed ortholog is 100%.
Bootstrap support for D3B0N0 as seed ortholog is 100%.

Group of orthologs #5. Best score 1963 bits
Score difference with first non-orthologous sequence - C.neoformans:1199 P.pallidum:651

Q5KET5              	100.00%		D3BVM0              	100.00%
Bootstrap support for Q5KET5 as seed ortholog is 100%.
Bootstrap support for D3BVM0 as seed ortholog is 100%.

Group of orthologs #6. Best score 1799 bits
Score difference with first non-orthologous sequence - C.neoformans:1799 P.pallidum:1799

Q5KEY7              	100.00%		D3BLH3              	100.00%
Bootstrap support for Q5KEY7 as seed ortholog is 100%.
Bootstrap support for D3BLH3 as seed ortholog is 100%.

Group of orthologs #7. Best score 1751 bits
Score difference with first non-orthologous sequence - C.neoformans:1751 P.pallidum:1751

Q5KGG3              	100.00%		D3BJK4              	100.00%
Bootstrap support for Q5KGG3 as seed ortholog is 100%.
Bootstrap support for D3BJK4 as seed ortholog is 100%.

Group of orthologs #8. Best score 1682 bits
Score difference with first non-orthologous sequence - C.neoformans:1682 P.pallidum:1682

Q5KA29              	100.00%		D3BNB1              	100.00%
Bootstrap support for Q5KA29 as seed ortholog is 100%.
Bootstrap support for D3BNB1 as seed ortholog is 100%.

Group of orthologs #9. Best score 1600 bits
Score difference with first non-orthologous sequence - C.neoformans:1600 P.pallidum:1600

Q5KFC9              	100.00%		D3BI99              	100.00%
Bootstrap support for Q5KFC9 as seed ortholog is 100%.
Bootstrap support for D3BI99 as seed ortholog is 100%.

Group of orthologs #10. Best score 1573 bits
Score difference with first non-orthologous sequence - C.neoformans:1573 P.pallidum:1573

P0CN26              	100.00%		D3BMV7              	100.00%
Bootstrap support for P0CN26 as seed ortholog is 100%.
Bootstrap support for D3BMV7 as seed ortholog is 100%.

Group of orthologs #11. Best score 1333 bits
Score difference with first non-orthologous sequence - C.neoformans:1333 P.pallidum:1333

Q5KFV9              	100.00%		D3BKC8              	100.00%
Bootstrap support for Q5KFV9 as seed ortholog is 100%.
Bootstrap support for D3BKC8 as seed ortholog is 100%.

Group of orthologs #12. Best score 1316 bits
Score difference with first non-orthologous sequence - C.neoformans:1316 P.pallidum:1316

Q5KC33              	100.00%		D3B936              	100.00%
Bootstrap support for Q5KC33 as seed ortholog is 100%.
Bootstrap support for D3B936 as seed ortholog is 100%.

Group of orthologs #13. Best score 1229 bits
Score difference with first non-orthologous sequence - C.neoformans:469 P.pallidum:448

Q5KJ25              	100.00%		D3AVT3              	100.00%
Bootstrap support for Q5KJ25 as seed ortholog is 100%.
Bootstrap support for D3AVT3 as seed ortholog is 100%.

Group of orthologs #14. Best score 1180 bits
Score difference with first non-orthologous sequence - C.neoformans:1180 P.pallidum:1180

Q5KIB7              	100.00%		D3BHD6              	100.00%
Bootstrap support for Q5KIB7 as seed ortholog is 100%.
Bootstrap support for D3BHD6 as seed ortholog is 100%.

Group of orthologs #15. Best score 1156 bits
Score difference with first non-orthologous sequence - C.neoformans:1156 P.pallidum:738

Q5KA71              	100.00%		D3BIX9              	100.00%
Bootstrap support for Q5KA71 as seed ortholog is 100%.
Bootstrap support for D3BIX9 as seed ortholog is 100%.

Group of orthologs #16. Best score 1121 bits
Score difference with first non-orthologous sequence - C.neoformans:1121 P.pallidum:191

Q5KP97              	100.00%		D3B7U7              	100.00%
Bootstrap support for Q5KP97 as seed ortholog is 100%.
Bootstrap support for D3B7U7 as seed ortholog is 98%.

Group of orthologs #17. Best score 1106 bits
Score difference with first non-orthologous sequence - C.neoformans:1106 P.pallidum:1106

Q5KIF6              	100.00%		D3BS87              	100.00%
Bootstrap support for Q5KIF6 as seed ortholog is 100%.
Bootstrap support for D3BS87 as seed ortholog is 100%.

Group of orthologs #18. Best score 1104 bits
Score difference with first non-orthologous sequence - C.neoformans:1104 P.pallidum:942

Q5KPM2              	100.00%		D3BUX1              	100.00%
Bootstrap support for Q5KPM2 as seed ortholog is 100%.
Bootstrap support for D3BUX1 as seed ortholog is 100%.

Group of orthologs #19. Best score 1103 bits
Score difference with first non-orthologous sequence - C.neoformans:1103 P.pallidum:433

Q5KGT3              	100.00%		D3BB51              	100.00%
Bootstrap support for Q5KGT3 as seed ortholog is 100%.
Bootstrap support for D3BB51 as seed ortholog is 100%.

Group of orthologs #20. Best score 1078 bits
Score difference with first non-orthologous sequence - C.neoformans:1078 P.pallidum:1078

Q5KEH7              	100.00%		D3B3V5              	100.00%
Bootstrap support for Q5KEH7 as seed ortholog is 100%.
Bootstrap support for D3B3V5 as seed ortholog is 100%.

Group of orthologs #21. Best score 1072 bits
Score difference with first non-orthologous sequence - C.neoformans:1072 P.pallidum:272

Q5KHJ9              	100.00%		D3BU68              	100.00%
Bootstrap support for Q5KHJ9 as seed ortholog is 100%.
Bootstrap support for D3BU68 as seed ortholog is 100%.

Group of orthologs #22. Best score 1070 bits
Score difference with first non-orthologous sequence - C.neoformans:1070 P.pallidum:1070

Q5KBW5              	100.00%		D3BBT9              	100.00%
Bootstrap support for Q5KBW5 as seed ortholog is 100%.
Bootstrap support for D3BBT9 as seed ortholog is 100%.

Group of orthologs #23. Best score 1067 bits
Score difference with first non-orthologous sequence - C.neoformans:1067 P.pallidum:1067

Q5KKD9              	100.00%		D3AWD9              	100.00%
Bootstrap support for Q5KKD9 as seed ortholog is 100%.
Bootstrap support for D3AWD9 as seed ortholog is 100%.

Group of orthologs #24. Best score 1041 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:838

Q5KIK6              	100.00%		D3BTY9              	100.00%
Bootstrap support for Q5KIK6 as seed ortholog is 99%.
Bootstrap support for D3BTY9 as seed ortholog is 100%.

Group of orthologs #25. Best score 1036 bits
Score difference with first non-orthologous sequence - C.neoformans:1036 P.pallidum:430

Q5KPX3              	100.00%		D3BPX4              	100.00%
Bootstrap support for Q5KPX3 as seed ortholog is 100%.
Bootstrap support for D3BPX4 as seed ortholog is 100%.

Group of orthologs #26. Best score 1025 bits
Score difference with first non-orthologous sequence - C.neoformans:380 P.pallidum:1025

Q5KH79              	100.00%		D3BLR5              	100.00%
Bootstrap support for Q5KH79 as seed ortholog is 100%.
Bootstrap support for D3BLR5 as seed ortholog is 100%.

Group of orthologs #27. Best score 1024 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:492

Q5KNB3              	100.00%		D3BFY1              	100.00%
                    	       		D3B9U1              	41.38%
                    	       		D3BCU4              	40.70%
                    	       		D3BLW2              	37.94%
                    	       		D3BNU9              	33.61%
Bootstrap support for Q5KNB3 as seed ortholog is 85%.
Bootstrap support for D3BFY1 as seed ortholog is 100%.

Group of orthologs #28. Best score 1014 bits
Score difference with first non-orthologous sequence - C.neoformans:1014 P.pallidum:1014

Q5KGK1              	100.00%		D3BIF3              	100.00%
Bootstrap support for Q5KGK1 as seed ortholog is 100%.
Bootstrap support for D3BIF3 as seed ortholog is 100%.

Group of orthologs #29. Best score 1013 bits
Score difference with first non-orthologous sequence - C.neoformans:1013 P.pallidum:1013

Q5KEV8              	100.00%		D3B127              	100.00%
Bootstrap support for Q5KEV8 as seed ortholog is 100%.
Bootstrap support for D3B127 as seed ortholog is 100%.

Group of orthologs #30. Best score 1002 bits
Score difference with first non-orthologous sequence - C.neoformans:1002 P.pallidum:521

Q5KIQ1              	100.00%		D3BFQ2              	100.00%
Bootstrap support for Q5KIQ1 as seed ortholog is 100%.
Bootstrap support for D3BFQ2 as seed ortholog is 100%.

Group of orthologs #31. Best score 999 bits
Score difference with first non-orthologous sequence - C.neoformans:999 P.pallidum:999

Q5KL19              	100.00%		D3AWX9              	100.00%
Bootstrap support for Q5KL19 as seed ortholog is 100%.
Bootstrap support for D3AWX9 as seed ortholog is 100%.

Group of orthologs #32. Best score 982 bits
Score difference with first non-orthologous sequence - C.neoformans:982 P.pallidum:893

Q5KE57              	100.00%		D3BG39              	100.00%
Bootstrap support for Q5KE57 as seed ortholog is 100%.
Bootstrap support for D3BG39 as seed ortholog is 100%.

Group of orthologs #33. Best score 976 bits
Score difference with first non-orthologous sequence - C.neoformans:539 P.pallidum:577

Q5KD67              	100.00%		D3B2A8              	100.00%
Bootstrap support for Q5KD67 as seed ortholog is 100%.
Bootstrap support for D3B2A8 as seed ortholog is 100%.

Group of orthologs #34. Best score 960 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.pallidum:303

Q5KP96              	100.00%		D3BVP5              	100.00%
Bootstrap support for Q5KP96 as seed ortholog is 99%.
Bootstrap support for D3BVP5 as seed ortholog is 100%.

Group of orthologs #35. Best score 959 bits
Score difference with first non-orthologous sequence - C.neoformans:959 P.pallidum:959

Q5KG64              	100.00%		D3AYJ5              	100.00%
Bootstrap support for Q5KG64 as seed ortholog is 100%.
Bootstrap support for D3AYJ5 as seed ortholog is 100%.

Group of orthologs #36. Best score 959 bits
Score difference with first non-orthologous sequence - C.neoformans:959 P.pallidum:287

Q5KMH0              	100.00%		D3B6X4              	100.00%
Bootstrap support for Q5KMH0 as seed ortholog is 100%.
Bootstrap support for D3B6X4 as seed ortholog is 100%.

Group of orthologs #37. Best score 952 bits
Score difference with first non-orthologous sequence - C.neoformans:952 P.pallidum:158

P0CP00              	100.00%		D3BKB9              	100.00%
Bootstrap support for P0CP00 as seed ortholog is 100%.
Bootstrap support for D3BKB9 as seed ortholog is 99%.

Group of orthologs #38. Best score 940 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.pallidum:600

Q5KKM4              	100.00%		D3B545              	100.00%
Q5KKP4              	81.39%		D3AVQ2              	46.15%
Bootstrap support for Q5KKM4 as seed ortholog is 100%.
Bootstrap support for D3B545 as seed ortholog is 100%.

Group of orthologs #39. Best score 935 bits
Score difference with first non-orthologous sequence - C.neoformans:935 P.pallidum:206

Q5KMF6              	100.00%		D3BPX3              	100.00%
Bootstrap support for Q5KMF6 as seed ortholog is 100%.
Bootstrap support for D3BPX3 as seed ortholog is 99%.

Group of orthologs #40. Best score 925 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.pallidum:161

Q5KJN9              	100.00%		D3B5K6              	100.00%
Bootstrap support for Q5KJN9 as seed ortholog is 94%.
Bootstrap support for D3B5K6 as seed ortholog is 98%.

Group of orthologs #41. Best score 903 bits
Score difference with first non-orthologous sequence - C.neoformans:903 P.pallidum:903

Q5KKH8              	100.00%		D3B244              	100.00%
Bootstrap support for Q5KKH8 as seed ortholog is 100%.
Bootstrap support for D3B244 as seed ortholog is 100%.

Group of orthologs #42. Best score 902 bits
Score difference with first non-orthologous sequence - C.neoformans:494 P.pallidum:323

Q5K7R6              	100.00%		D3BEQ3              	100.00%
Bootstrap support for Q5K7R6 as seed ortholog is 100%.
Bootstrap support for D3BEQ3 as seed ortholog is 100%.

Group of orthologs #43. Best score 899 bits
Score difference with first non-orthologous sequence - C.neoformans:600 P.pallidum:672

Q5KH77              	100.00%		D3BDE5              	100.00%
Bootstrap support for Q5KH77 as seed ortholog is 100%.
Bootstrap support for D3BDE5 as seed ortholog is 100%.

Group of orthologs #44. Best score 899 bits
Score difference with first non-orthologous sequence - C.neoformans:899 P.pallidum:899

Q5KG77              	100.00%		D3BID1              	100.00%
Bootstrap support for Q5KG77 as seed ortholog is 100%.
Bootstrap support for D3BID1 as seed ortholog is 100%.

Group of orthologs #45. Best score 880 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.pallidum:665

Q5KN49              	100.00%		D3BQN9              	100.00%
                    	       		D3B2N2              	62.82%
                    	       		D3BQP1              	42.49%
                    	       		D3B9D6              	21.92%
Bootstrap support for Q5KN49 as seed ortholog is 100%.
Bootstrap support for D3BQN9 as seed ortholog is 100%.

Group of orthologs #46. Best score 878 bits
Score difference with first non-orthologous sequence - C.neoformans:878 P.pallidum:878

Q5KM99              	100.00%		D3B7Q6              	100.00%
Bootstrap support for Q5KM99 as seed ortholog is 100%.
Bootstrap support for D3B7Q6 as seed ortholog is 100%.

Group of orthologs #47. Best score 861 bits
Score difference with first non-orthologous sequence - C.neoformans:861 P.pallidum:861

Q5K754              	100.00%		D3B5A9              	100.00%
Bootstrap support for Q5K754 as seed ortholog is 100%.
Bootstrap support for D3B5A9 as seed ortholog is 100%.

Group of orthologs #48. Best score 853 bits
Score difference with first non-orthologous sequence - C.neoformans:408 P.pallidum:853

Q5KCR8              	100.00%		D3B1P3              	100.00%
Bootstrap support for Q5KCR8 as seed ortholog is 100%.
Bootstrap support for D3B1P3 as seed ortholog is 100%.

Group of orthologs #49. Best score 848 bits
Score difference with first non-orthologous sequence - C.neoformans:848 P.pallidum:848

Q5KF07              	100.00%		D3AYA7              	100.00%
                    	       		D3BVE1              	10.73%
Bootstrap support for Q5KF07 as seed ortholog is 100%.
Bootstrap support for D3AYA7 as seed ortholog is 100%.

Group of orthologs #50. Best score 847 bits
Score difference with first non-orthologous sequence - C.neoformans:847 P.pallidum:750

Q5K7U0              	100.00%		D3B015              	100.00%
Bootstrap support for Q5K7U0 as seed ortholog is 100%.
Bootstrap support for D3B015 as seed ortholog is 100%.

Group of orthologs #51. Best score 847 bits
Score difference with first non-orthologous sequence - C.neoformans:847 P.pallidum:847

Q5KLE4              	100.00%		D3BD99              	100.00%
Bootstrap support for Q5KLE4 as seed ortholog is 100%.
Bootstrap support for D3BD99 as seed ortholog is 100%.

Group of orthologs #52. Best score 846 bits
Score difference with first non-orthologous sequence - C.neoformans:649 P.pallidum:679

Q5KDF5              	100.00%		D3BQ59              	100.00%
Bootstrap support for Q5KDF5 as seed ortholog is 100%.
Bootstrap support for D3BQ59 as seed ortholog is 100%.

Group of orthologs #53. Best score 842 bits
Score difference with first non-orthologous sequence - C.neoformans:842 P.pallidum:842

Q5KA48              	100.00%		D3AZS3              	100.00%
Bootstrap support for Q5KA48 as seed ortholog is 100%.
Bootstrap support for D3AZS3 as seed ortholog is 100%.

Group of orthologs #54. Best score 839 bits
Score difference with first non-orthologous sequence - C.neoformans:839 P.pallidum:505

Q5KF97              	100.00%		D3B7Q7              	100.00%
Bootstrap support for Q5KF97 as seed ortholog is 100%.
Bootstrap support for D3B7Q7 as seed ortholog is 100%.

Group of orthologs #55. Best score 824 bits
Score difference with first non-orthologous sequence - C.neoformans:824 P.pallidum:136

Q5K9A5              	100.00%		D3B8W8              	100.00%
Bootstrap support for Q5K9A5 as seed ortholog is 100%.
Bootstrap support for D3B8W8 as seed ortholog is 100%.

Group of orthologs #56. Best score 821 bits
Score difference with first non-orthologous sequence - C.neoformans:735 P.pallidum:726

Q5KN88              	100.00%		D3AZB7              	100.00%
Bootstrap support for Q5KN88 as seed ortholog is 100%.
Bootstrap support for D3AZB7 as seed ortholog is 100%.

Group of orthologs #57. Best score 821 bits
Score difference with first non-orthologous sequence - C.neoformans:821 P.pallidum:821

Q5KPH0              	100.00%		D3BG38              	100.00%
Bootstrap support for Q5KPH0 as seed ortholog is 100%.
Bootstrap support for D3BG38 as seed ortholog is 100%.

Group of orthologs #58. Best score 816 bits
Score difference with first non-orthologous sequence - C.neoformans:816 P.pallidum:407

P0CN32              	100.00%		D3BMN4              	100.00%
Bootstrap support for P0CN32 as seed ortholog is 100%.
Bootstrap support for D3BMN4 as seed ortholog is 100%.

Group of orthologs #59. Best score 815 bits
Score difference with first non-orthologous sequence - C.neoformans:815 P.pallidum:494

Q5KJI1              	100.00%		D3B0C6              	100.00%
Bootstrap support for Q5KJI1 as seed ortholog is 100%.
Bootstrap support for D3B0C6 as seed ortholog is 100%.

Group of orthologs #60. Best score 813 bits
Score difference with first non-orthologous sequence - C.neoformans:813 P.pallidum:813

P0CN82              	100.00%		D3BPV1              	100.00%
Bootstrap support for P0CN82 as seed ortholog is 100%.
Bootstrap support for D3BPV1 as seed ortholog is 100%.

Group of orthologs #61. Best score 805 bits
Score difference with first non-orthologous sequence - C.neoformans:805 P.pallidum:805

Q5KKQ6              	100.00%		D3B350              	100.00%
Bootstrap support for Q5KKQ6 as seed ortholog is 100%.
Bootstrap support for D3B350 as seed ortholog is 100%.

Group of orthologs #62. Best score 805 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.pallidum:559

Q5KDY4              	100.00%		D3BMR9              	100.00%
Bootstrap support for Q5KDY4 as seed ortholog is 100%.
Bootstrap support for D3BMR9 as seed ortholog is 100%.

Group of orthologs #63. Best score 804 bits
Score difference with first non-orthologous sequence - C.neoformans:705 P.pallidum:804

Q5KGV5              	100.00%		D3B700              	100.00%
Bootstrap support for Q5KGV5 as seed ortholog is 100%.
Bootstrap support for D3B700 as seed ortholog is 100%.

Group of orthologs #64. Best score 797 bits
Score difference with first non-orthologous sequence - C.neoformans:797 P.pallidum:797

Q5K9S3              	100.00%		D3BSF9              	100.00%
Bootstrap support for Q5K9S3 as seed ortholog is 100%.
Bootstrap support for D3BSF9 as seed ortholog is 100%.

Group of orthologs #65. Best score 788 bits
Score difference with first non-orthologous sequence - C.neoformans:788 P.pallidum:706

Q5K8Q4              	100.00%		D3BEG0              	100.00%
Bootstrap support for Q5K8Q4 as seed ortholog is 100%.
Bootstrap support for D3BEG0 as seed ortholog is 100%.

Group of orthologs #66. Best score 788 bits
Score difference with first non-orthologous sequence - C.neoformans:788 P.pallidum:788

Q5KJ92              	100.00%		D3BT84              	100.00%
Bootstrap support for Q5KJ92 as seed ortholog is 100%.
Bootstrap support for D3BT84 as seed ortholog is 100%.

Group of orthologs #67. Best score 785 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:552

Q5K6Z6              	100.00%		D3BE43              	100.00%
Bootstrap support for Q5K6Z6 as seed ortholog is 99%.
Bootstrap support for D3BE43 as seed ortholog is 100%.

Group of orthologs #68. Best score 779 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.pallidum:160

Q5KEX1              	100.00%		D3BEE3              	100.00%
Bootstrap support for Q5KEX1 as seed ortholog is 99%.
Bootstrap support for D3BEE3 as seed ortholog is 99%.

Group of orthologs #69. Best score 775 bits
Score difference with first non-orthologous sequence - C.neoformans:775 P.pallidum:775

Q5KIS3              	100.00%		D3B7S0              	100.00%
Bootstrap support for Q5KIS3 as seed ortholog is 100%.
Bootstrap support for D3B7S0 as seed ortholog is 100%.

Group of orthologs #70. Best score 775 bits
Score difference with first non-orthologous sequence - C.neoformans:775 P.pallidum:775

Q5KNL1              	100.00%		D3BK67              	100.00%
Bootstrap support for Q5KNL1 as seed ortholog is 100%.
Bootstrap support for D3BK67 as seed ortholog is 100%.

Group of orthologs #71. Best score 762 bits
Score difference with first non-orthologous sequence - C.neoformans:762 P.pallidum:684

Q5KDU2              	100.00%		D3BC39              	100.00%
Bootstrap support for Q5KDU2 as seed ortholog is 100%.
Bootstrap support for D3BC39 as seed ortholog is 100%.

Group of orthologs #72. Best score 753 bits
Score difference with first non-orthologous sequence - C.neoformans:753 P.pallidum:753

P0CR22              	100.00%		D3BN72              	100.00%
Bootstrap support for P0CR22 as seed ortholog is 100%.
Bootstrap support for D3BN72 as seed ortholog is 100%.

Group of orthologs #73. Best score 747 bits
Score difference with first non-orthologous sequence - C.neoformans:747 P.pallidum:747

Q5KDZ1              	100.00%		D3BNJ7              	100.00%
Bootstrap support for Q5KDZ1 as seed ortholog is 100%.
Bootstrap support for D3BNJ7 as seed ortholog is 100%.

Group of orthologs #74. Best score 745 bits
Score difference with first non-orthologous sequence - C.neoformans:745 P.pallidum:745

Q5KBF6              	100.00%		D3B594              	100.00%
Bootstrap support for Q5KBF6 as seed ortholog is 100%.
Bootstrap support for D3B594 as seed ortholog is 100%.

Group of orthologs #75. Best score 740 bits
Score difference with first non-orthologous sequence - C.neoformans:629 P.pallidum:740

Q5KBW0              	100.00%		D3B5K2              	100.00%
Bootstrap support for Q5KBW0 as seed ortholog is 100%.
Bootstrap support for D3B5K2 as seed ortholog is 100%.

Group of orthologs #76. Best score 738 bits
Score difference with first non-orthologous sequence - C.neoformans:738 P.pallidum:738

Q5K7B4              	100.00%		D3BJB3              	100.00%
Bootstrap support for Q5K7B4 as seed ortholog is 100%.
Bootstrap support for D3BJB3 as seed ortholog is 100%.

Group of orthologs #77. Best score 736 bits
Score difference with first non-orthologous sequence - C.neoformans:736 P.pallidum:736

Q5KNR6              	100.00%		D3BKQ8              	100.00%
Bootstrap support for Q5KNR6 as seed ortholog is 100%.
Bootstrap support for D3BKQ8 as seed ortholog is 100%.

Group of orthologs #78. Best score 734 bits
Score difference with first non-orthologous sequence - C.neoformans:734 P.pallidum:734

Q5KB97              	100.00%		D3BTI9              	100.00%
Bootstrap support for Q5KB97 as seed ortholog is 100%.
Bootstrap support for D3BTI9 as seed ortholog is 100%.

Group of orthologs #79. Best score 732 bits
Score difference with first non-orthologous sequence - C.neoformans:569 P.pallidum:366

Q5KN48              	100.00%		D3B6W7              	100.00%
Bootstrap support for Q5KN48 as seed ortholog is 100%.
Bootstrap support for D3B6W7 as seed ortholog is 100%.

Group of orthologs #80. Best score 727 bits
Score difference with first non-orthologous sequence - C.neoformans:727 P.pallidum:212

Q5KMU3              	100.00%		D3BMT5              	100.00%
Bootstrap support for Q5KMU3 as seed ortholog is 100%.
Bootstrap support for D3BMT5 as seed ortholog is 99%.

Group of orthologs #81. Best score 725 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.pallidum:725

Q5K8W5              	100.00%		D3AY31              	100.00%
Bootstrap support for Q5K8W5 as seed ortholog is 100%.
Bootstrap support for D3AY31 as seed ortholog is 100%.

Group of orthologs #82. Best score 723 bits
Score difference with first non-orthologous sequence - C.neoformans:723 P.pallidum:723

Q5KBP7              	100.00%		D3BM68              	100.00%
Bootstrap support for Q5KBP7 as seed ortholog is 100%.
Bootstrap support for D3BM68 as seed ortholog is 100%.

Group of orthologs #83. Best score 722 bits
Score difference with first non-orthologous sequence - C.neoformans:722 P.pallidum:722

Q5KAX5              	100.00%		D3B684              	100.00%
Bootstrap support for Q5KAX5 as seed ortholog is 100%.
Bootstrap support for D3B684 as seed ortholog is 100%.

Group of orthologs #84. Best score 719 bits
Score difference with first non-orthologous sequence - C.neoformans:566 P.pallidum:309

Q5KQ62              	100.00%		D3B1G6              	100.00%
Bootstrap support for Q5KQ62 as seed ortholog is 100%.
Bootstrap support for D3B1G6 as seed ortholog is 99%.

Group of orthologs #85. Best score 716 bits
Score difference with first non-orthologous sequence - C.neoformans:716 P.pallidum:510

Q5KQ47              	100.00%		D3BFC6              	100.00%
Bootstrap support for Q5KQ47 as seed ortholog is 100%.
Bootstrap support for D3BFC6 as seed ortholog is 100%.

Group of orthologs #86. Best score 714 bits
Score difference with first non-orthologous sequence - C.neoformans:714 P.pallidum:714

Q5K9B2              	100.00%		D3B5K0              	100.00%
Bootstrap support for Q5K9B2 as seed ortholog is 100%.
Bootstrap support for D3B5K0 as seed ortholog is 100%.

Group of orthologs #87. Best score 710 bits
Score difference with first non-orthologous sequence - C.neoformans:410 P.pallidum:390

Q5KIC0              	100.00%		D3BT92              	100.00%
                    	       		D3BF92              	63.50%
                    	       		D3BH58              	32.89%
                    	       		D3BG47              	7.41%
                    	       		D3BBZ7              	6.16%
Bootstrap support for Q5KIC0 as seed ortholog is 100%.
Bootstrap support for D3BT92 as seed ortholog is 100%.

Group of orthologs #88. Best score 708 bits
Score difference with first non-orthologous sequence - C.neoformans:571 P.pallidum:593

Q5KIF1              	100.00%		D3BVG6              	100.00%
                    	       		D3AY71              	6.89%
Bootstrap support for Q5KIF1 as seed ortholog is 100%.
Bootstrap support for D3BVG6 as seed ortholog is 100%.

Group of orthologs #89. Best score 708 bits
Score difference with first non-orthologous sequence - C.neoformans:708 P.pallidum:708

Q5KQ25              	100.00%		D3B3X9              	100.00%
Bootstrap support for Q5KQ25 as seed ortholog is 100%.
Bootstrap support for D3B3X9 as seed ortholog is 100%.

Group of orthologs #90. Best score 705 bits
Score difference with first non-orthologous sequence - C.neoformans:705 P.pallidum:705

Q5K9D7              	100.00%		D3B8U1              	100.00%
Bootstrap support for Q5K9D7 as seed ortholog is 100%.
Bootstrap support for D3B8U1 as seed ortholog is 100%.

Group of orthologs #91. Best score 702 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.pallidum:483

F5HCX1              	100.00%		D3AZS5              	100.00%
Bootstrap support for F5HCX1 as seed ortholog is 99%.
Bootstrap support for D3AZS5 as seed ortholog is 100%.

Group of orthologs #92. Best score 702 bits
Score difference with first non-orthologous sequence - C.neoformans:702 P.pallidum:702

Q5KJT2              	100.00%		D3BH29              	100.00%
Bootstrap support for Q5KJT2 as seed ortholog is 100%.
Bootstrap support for D3BH29 as seed ortholog is 100%.

Group of orthologs #93. Best score 701 bits
Score difference with first non-orthologous sequence - C.neoformans:482 P.pallidum:209

Q5KBX3              	100.00%		D3BMZ2              	100.00%
Bootstrap support for Q5KBX3 as seed ortholog is 100%.
Bootstrap support for D3BMZ2 as seed ortholog is 99%.

Group of orthologs #94. Best score 698 bits
Score difference with first non-orthologous sequence - C.neoformans:493 P.pallidum:164

Q5KP06              	100.00%		D3B2M1              	100.00%
                    	       		D3BD07              	100.00%
                    	       		D3BM82              	81.97%
                    	       		D3BSX0              	80.33%
Bootstrap support for Q5KP06 as seed ortholog is 100%.
Bootstrap support for D3B2M1 as seed ortholog is 100%.
Bootstrap support for D3BD07 as seed ortholog is 100%.

Group of orthologs #95. Best score 694 bits
Score difference with first non-orthologous sequence - C.neoformans:694 P.pallidum:694

Q5KI75              	100.00%		D3BBR7              	100.00%
Bootstrap support for Q5KI75 as seed ortholog is 100%.
Bootstrap support for D3BBR7 as seed ortholog is 100%.

Group of orthologs #96. Best score 691 bits
Score difference with first non-orthologous sequence - C.neoformans:610 P.pallidum:65

Q5K9G4              	100.00%		D3AVI9              	100.00%
Bootstrap support for Q5K9G4 as seed ortholog is 100%.
Bootstrap support for D3AVI9 as seed ortholog is 79%.

Group of orthologs #97. Best score 686 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.pallidum:292

Q5KKP2              	100.00%		D3BAY0              	100.00%
Bootstrap support for Q5KKP2 as seed ortholog is 100%.
Bootstrap support for D3BAY0 as seed ortholog is 100%.

Group of orthologs #98. Best score 683 bits
Score difference with first non-orthologous sequence - C.neoformans:683 P.pallidum:683

Q5KEF7              	100.00%		D3BUF5              	100.00%
Bootstrap support for Q5KEF7 as seed ortholog is 100%.
Bootstrap support for D3BUF5 as seed ortholog is 100%.

Group of orthologs #99. Best score 683 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.pallidum:683

Q5KKE7              	100.00%		D3BQW2              	100.00%
Bootstrap support for Q5KKE7 as seed ortholog is 99%.
Bootstrap support for D3BQW2 as seed ortholog is 100%.

Group of orthologs #100. Best score 682 bits
Score difference with first non-orthologous sequence - C.neoformans:682 P.pallidum:682

Q5KNE7              	100.00%		D3BEN7              	100.00%
Bootstrap support for Q5KNE7 as seed ortholog is 100%.
Bootstrap support for D3BEN7 as seed ortholog is 100%.

Group of orthologs #101. Best score 679 bits
Score difference with first non-orthologous sequence - C.neoformans:679 P.pallidum:627

Q5KB69              	100.00%		D3BIJ3              	100.00%
Bootstrap support for Q5KB69 as seed ortholog is 100%.
Bootstrap support for D3BIJ3 as seed ortholog is 100%.

Group of orthologs #102. Best score 678 bits
Score difference with first non-orthologous sequence - C.neoformans:678 P.pallidum:678

Q5KJ87              	100.00%		D3BNY4              	100.00%
Bootstrap support for Q5KJ87 as seed ortholog is 100%.
Bootstrap support for D3BNY4 as seed ortholog is 100%.

Group of orthologs #103. Best score 675 bits
Score difference with first non-orthologous sequence - C.neoformans:675 P.pallidum:675

Q5KFG6              	100.00%		D3B986              	100.00%
                    	       		D3AW84              	15.78%
Bootstrap support for Q5KFG6 as seed ortholog is 100%.
Bootstrap support for D3B986 as seed ortholog is 100%.

Group of orthologs #104. Best score 675 bits
Score difference with first non-orthologous sequence - C.neoformans:675 P.pallidum:462

Q5KL42              	100.00%		D3BCV5              	100.00%
Bootstrap support for Q5KL42 as seed ortholog is 100%.
Bootstrap support for D3BCV5 as seed ortholog is 100%.

Group of orthologs #105. Best score 673 bits
Score difference with first non-orthologous sequence - C.neoformans:673 P.pallidum:472

Q5KPI3              	100.00%		D3BPJ6              	100.00%
Bootstrap support for Q5KPI3 as seed ortholog is 100%.
Bootstrap support for D3BPJ6 as seed ortholog is 100%.

Group of orthologs #106. Best score 672 bits
Score difference with first non-orthologous sequence - C.neoformans:672 P.pallidum:672

Q5KHW3              	100.00%		D3B2J1              	100.00%
Bootstrap support for Q5KHW3 as seed ortholog is 100%.
Bootstrap support for D3B2J1 as seed ortholog is 100%.

Group of orthologs #107. Best score 669 bits
Score difference with first non-orthologous sequence - C.neoformans:669 P.pallidum:669

Q5KEG6              	100.00%		D3BJL2              	100.00%
Bootstrap support for Q5KEG6 as seed ortholog is 100%.
Bootstrap support for D3BJL2 as seed ortholog is 100%.

Group of orthologs #108. Best score 669 bits
Score difference with first non-orthologous sequence - C.neoformans:573 P.pallidum:669

Q5KLI3              	100.00%		D3BP16              	100.00%
Bootstrap support for Q5KLI3 as seed ortholog is 100%.
Bootstrap support for D3BP16 as seed ortholog is 100%.

Group of orthologs #109. Best score 666 bits
Score difference with first non-orthologous sequence - C.neoformans:666 P.pallidum:666

Q5KPQ9              	100.00%		D3AZW1              	100.00%
Bootstrap support for Q5KPQ9 as seed ortholog is 100%.
Bootstrap support for D3AZW1 as seed ortholog is 100%.

Group of orthologs #110. Best score 666 bits
Score difference with first non-orthologous sequence - C.neoformans:666 P.pallidum:666

Q5KI64              	100.00%		D3BLC0              	100.00%
Bootstrap support for Q5KI64 as seed ortholog is 100%.
Bootstrap support for D3BLC0 as seed ortholog is 100%.

Group of orthologs #111. Best score 659 bits
Score difference with first non-orthologous sequence - C.neoformans:659 P.pallidum:659

Q5KKV6              	100.00%		D3BB77              	100.00%
Bootstrap support for Q5KKV6 as seed ortholog is 100%.
Bootstrap support for D3BB77 as seed ortholog is 100%.

Group of orthologs #112. Best score 657 bits
Score difference with first non-orthologous sequence - C.neoformans:657 P.pallidum:657

Q5KNM9              	100.00%		D3BSJ1              	100.00%
Bootstrap support for Q5KNM9 as seed ortholog is 100%.
Bootstrap support for D3BSJ1 as seed ortholog is 100%.

Group of orthologs #113. Best score 654 bits
Score difference with first non-orthologous sequence - C.neoformans:654 P.pallidum:654

Q5KAR2              	100.00%		D3BQ18              	100.00%
Bootstrap support for Q5KAR2 as seed ortholog is 100%.
Bootstrap support for D3BQ18 as seed ortholog is 100%.

Group of orthologs #114. Best score 653 bits
Score difference with first non-orthologous sequence - C.neoformans:653 P.pallidum:404

Q5KE94              	100.00%		D3B3N8              	100.00%
Bootstrap support for Q5KE94 as seed ortholog is 100%.
Bootstrap support for D3B3N8 as seed ortholog is 100%.

Group of orthologs #115. Best score 653 bits
Score difference with first non-orthologous sequence - C.neoformans:653 P.pallidum:281

Q5KJ33              	100.00%		D3B6I9              	100.00%
Bootstrap support for Q5KJ33 as seed ortholog is 100%.
Bootstrap support for D3B6I9 as seed ortholog is 99%.

Group of orthologs #116. Best score 653 bits
Score difference with first non-orthologous sequence - C.neoformans:653 P.pallidum:419

Q5KP40              	100.00%		D3B5E4              	100.00%
Bootstrap support for Q5KP40 as seed ortholog is 100%.
Bootstrap support for D3B5E4 as seed ortholog is 100%.

Group of orthologs #117. Best score 652 bits
Score difference with first non-orthologous sequence - C.neoformans:652 P.pallidum:652

Q5KMN3              	100.00%		D3BFQ1              	100.00%
Bootstrap support for Q5KMN3 as seed ortholog is 100%.
Bootstrap support for D3BFQ1 as seed ortholog is 100%.

Group of orthologs #118. Best score 651 bits
Score difference with first non-orthologous sequence - C.neoformans:651 P.pallidum:444

Q5K9H1              	100.00%		D3B0K9              	100.00%
Bootstrap support for Q5K9H1 as seed ortholog is 100%.
Bootstrap support for D3B0K9 as seed ortholog is 100%.

Group of orthologs #119. Best score 651 bits
Score difference with first non-orthologous sequence - C.neoformans:651 P.pallidum:651

P0CR38              	100.00%		D3B474              	100.00%
Bootstrap support for P0CR38 as seed ortholog is 100%.
Bootstrap support for D3B474 as seed ortholog is 100%.

Group of orthologs #120. Best score 647 bits
Score difference with first non-orthologous sequence - C.neoformans:560 P.pallidum:647

Q5KFU0              	100.00%		D3B434              	100.00%
Bootstrap support for Q5KFU0 as seed ortholog is 100%.
Bootstrap support for D3B434 as seed ortholog is 100%.

Group of orthologs #121. Best score 646 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.pallidum:646

Q5KM62              	100.00%		D3AWD2              	100.00%
                    	       		D3BGV6              	65.02%
Bootstrap support for Q5KM62 as seed ortholog is 100%.
Bootstrap support for D3AWD2 as seed ortholog is 100%.

Group of orthologs #122. Best score 644 bits
Score difference with first non-orthologous sequence - C.neoformans:644 P.pallidum:644

Q5K7P1              	100.00%		D3BQY0              	100.00%
Bootstrap support for Q5K7P1 as seed ortholog is 100%.
Bootstrap support for D3BQY0 as seed ortholog is 100%.

Group of orthologs #123. Best score 641 bits
Score difference with first non-orthologous sequence - C.neoformans:641 P.pallidum:641

Q5KLA1              	100.00%		D3B5W3              	100.00%
Bootstrap support for Q5KLA1 as seed ortholog is 100%.
Bootstrap support for D3B5W3 as seed ortholog is 100%.

Group of orthologs #124. Best score 640 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.pallidum:640

Q5KLX6              	100.00%		D3B5K4              	100.00%
Bootstrap support for Q5KLX6 as seed ortholog is 100%.
Bootstrap support for D3B5K4 as seed ortholog is 100%.

Group of orthologs #125. Best score 635 bits
Score difference with first non-orthologous sequence - C.neoformans:635 P.pallidum:635

Q5KC69              	100.00%		D3B1K5              	100.00%
Bootstrap support for Q5KC69 as seed ortholog is 100%.
Bootstrap support for D3B1K5 as seed ortholog is 100%.

Group of orthologs #126. Best score 633 bits
Score difference with first non-orthologous sequence - C.neoformans:633 P.pallidum:633

Q5KIH6              	100.00%		D3AWX0              	100.00%
Bootstrap support for Q5KIH6 as seed ortholog is 100%.
Bootstrap support for D3AWX0 as seed ortholog is 100%.

Group of orthologs #127. Best score 633 bits
Score difference with first non-orthologous sequence - C.neoformans:396 P.pallidum:267

P0CQ98              	100.00%		D3BBD1              	100.00%
Bootstrap support for P0CQ98 as seed ortholog is 100%.
Bootstrap support for D3BBD1 as seed ortholog is 100%.

Group of orthologs #128. Best score 633 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.pallidum:633

Q5K7N5              	100.00%		D3BRF2              	100.00%
Bootstrap support for Q5K7N5 as seed ortholog is 100%.
Bootstrap support for D3BRF2 as seed ortholog is 100%.

Group of orthologs #129. Best score 630 bits
Score difference with first non-orthologous sequence - C.neoformans:415 P.pallidum:478

P0CQ84              	100.00%		D3B6E1              	100.00%
Bootstrap support for P0CQ84 as seed ortholog is 100%.
Bootstrap support for D3B6E1 as seed ortholog is 100%.

Group of orthologs #130. Best score 630 bits
Score difference with first non-orthologous sequence - C.neoformans:556 P.pallidum:483

Q5KLI4              	100.00%		D3B4Y9              	100.00%
Bootstrap support for Q5KLI4 as seed ortholog is 100%.
Bootstrap support for D3B4Y9 as seed ortholog is 100%.

Group of orthologs #131. Best score 628 bits
Score difference with first non-orthologous sequence - C.neoformans:628 P.pallidum:463

Q5K6Z8              	100.00%		D3B8D9              	100.00%
Bootstrap support for Q5K6Z8 as seed ortholog is 100%.
Bootstrap support for D3B8D9 as seed ortholog is 100%.

Group of orthologs #132. Best score 628 bits
Score difference with first non-orthologous sequence - C.neoformans:628 P.pallidum:628

Q5KCG5              	100.00%		D3B3X6              	100.00%
Bootstrap support for Q5KCG5 as seed ortholog is 100%.
Bootstrap support for D3B3X6 as seed ortholog is 100%.

Group of orthologs #133. Best score 627 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.pallidum:404

Q5KQ07              	100.00%		D3B0M9              	100.00%
Bootstrap support for Q5KQ07 as seed ortholog is 100%.
Bootstrap support for D3B0M9 as seed ortholog is 100%.

Group of orthologs #134. Best score 624 bits
Score difference with first non-orthologous sequence - C.neoformans:624 P.pallidum:542

Q5K7K5              	100.00%		D3B1H9              	100.00%
Bootstrap support for Q5K7K5 as seed ortholog is 100%.
Bootstrap support for D3B1H9 as seed ortholog is 100%.

Group of orthologs #135. Best score 624 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:624

Q5KLG5              	100.00%		D3BB39              	100.00%
Bootstrap support for Q5KLG5 as seed ortholog is 100%.
Bootstrap support for D3BB39 as seed ortholog is 100%.

Group of orthologs #136. Best score 624 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.pallidum:391

Q5KLP9              	100.00%		D3BV25              	100.00%
Bootstrap support for Q5KLP9 as seed ortholog is 100%.
Bootstrap support for D3BV25 as seed ortholog is 100%.

Group of orthologs #137. Best score 619 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.pallidum:619

Q5KB11              	100.00%		D3BUQ9              	100.00%
Bootstrap support for Q5KB11 as seed ortholog is 99%.
Bootstrap support for D3BUQ9 as seed ortholog is 100%.

Group of orthologs #138. Best score 615 bits
Score difference with first non-orthologous sequence - C.neoformans:615 P.pallidum:615

Q5KGN2              	100.00%		D3B6W8              	100.00%
Bootstrap support for Q5KGN2 as seed ortholog is 100%.
Bootstrap support for D3B6W8 as seed ortholog is 100%.

Group of orthologs #139. Best score 613 bits
Score difference with first non-orthologous sequence - C.neoformans:613 P.pallidum:613

Q5KDL3              	100.00%		D3BIZ6              	100.00%
Bootstrap support for Q5KDL3 as seed ortholog is 100%.
Bootstrap support for D3BIZ6 as seed ortholog is 100%.

Group of orthologs #140. Best score 612 bits
Score difference with first non-orthologous sequence - C.neoformans:612 P.pallidum:612

P0CM96              	100.00%		D3B6H8              	100.00%
Bootstrap support for P0CM96 as seed ortholog is 100%.
Bootstrap support for D3B6H8 as seed ortholog is 100%.

Group of orthologs #141. Best score 611 bits
Score difference with first non-orthologous sequence - C.neoformans:611 P.pallidum:540

Q5K7B5              	100.00%		D3BII3              	100.00%
Bootstrap support for Q5K7B5 as seed ortholog is 100%.
Bootstrap support for D3BII3 as seed ortholog is 100%.

Group of orthologs #142. Best score 610 bits
Score difference with first non-orthologous sequence - C.neoformans:610 P.pallidum:610

Q5KIN6              	100.00%		D3BUD3              	100.00%
                    	       		D3BUC4              	43.72%
Bootstrap support for Q5KIN6 as seed ortholog is 100%.
Bootstrap support for D3BUD3 as seed ortholog is 100%.

Group of orthologs #143. Best score 610 bits
Score difference with first non-orthologous sequence - C.neoformans:610 P.pallidum:610

Q5KBV2              	100.00%		D3B3Y2              	100.00%
Bootstrap support for Q5KBV2 as seed ortholog is 100%.
Bootstrap support for D3B3Y2 as seed ortholog is 100%.

Group of orthologs #144. Best score 609 bits
Score difference with first non-orthologous sequence - C.neoformans:609 P.pallidum:464

Q5KBI1              	100.00%		D3BK16              	100.00%
Bootstrap support for Q5KBI1 as seed ortholog is 100%.
Bootstrap support for D3BK16 as seed ortholog is 100%.

Group of orthologs #145. Best score 608 bits
Score difference with first non-orthologous sequence - C.neoformans:608 P.pallidum:608

Q5KDD4              	100.00%		D3BQX1              	100.00%
Bootstrap support for Q5KDD4 as seed ortholog is 100%.
Bootstrap support for D3BQX1 as seed ortholog is 100%.

Group of orthologs #146. Best score 605 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.pallidum:213

Q5K722              	100.00%		D3BB49              	100.00%
Bootstrap support for Q5K722 as seed ortholog is 100%.
Bootstrap support for D3BB49 as seed ortholog is 99%.

Group of orthologs #147. Best score 605 bits
Score difference with first non-orthologous sequence - C.neoformans:491 P.pallidum:474

Q5KCW4              	100.00%		D3BP41              	100.00%
Bootstrap support for Q5KCW4 as seed ortholog is 100%.
Bootstrap support for D3BP41 as seed ortholog is 100%.

Group of orthologs #148. Best score 603 bits
Score difference with first non-orthologous sequence - C.neoformans:603 P.pallidum:603

Q5K9A8              	100.00%		D3BBF7              	100.00%
Bootstrap support for Q5K9A8 as seed ortholog is 100%.
Bootstrap support for D3BBF7 as seed ortholog is 100%.

Group of orthologs #149. Best score 598 bits
Score difference with first non-orthologous sequence - C.neoformans:598 P.pallidum:160

Q5KKT5              	100.00%		D3BHW3              	100.00%
Bootstrap support for Q5KKT5 as seed ortholog is 100%.
Bootstrap support for D3BHW3 as seed ortholog is 99%.

Group of orthologs #150. Best score 597 bits
Score difference with first non-orthologous sequence - C.neoformans:597 P.pallidum:536

Q5KLW7              	100.00%		D3B3I9              	100.00%
Bootstrap support for Q5KLW7 as seed ortholog is 100%.
Bootstrap support for D3B3I9 as seed ortholog is 100%.

Group of orthologs #151. Best score 597 bits
Score difference with first non-orthologous sequence - C.neoformans:597 P.pallidum:597

Q5KEV3              	100.00%		D3BMP9              	100.00%
Bootstrap support for Q5KEV3 as seed ortholog is 100%.
Bootstrap support for D3BMP9 as seed ortholog is 100%.

Group of orthologs #152. Best score 597 bits
Score difference with first non-orthologous sequence - C.neoformans:597 P.pallidum:597

Q5KGM7              	100.00%		D3BTW9              	100.00%
Bootstrap support for Q5KGM7 as seed ortholog is 100%.
Bootstrap support for D3BTW9 as seed ortholog is 100%.

Group of orthologs #153. Best score 596 bits
Score difference with first non-orthologous sequence - C.neoformans:445 P.pallidum:398

Q5KN74              	100.00%		D3AYZ6              	100.00%
Bootstrap support for Q5KN74 as seed ortholog is 100%.
Bootstrap support for D3AYZ6 as seed ortholog is 100%.

Group of orthologs #154. Best score 596 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.pallidum:202

Q5KJ82              	100.00%		D3BFH7              	100.00%
Bootstrap support for Q5KJ82 as seed ortholog is 100%.
Bootstrap support for D3BFH7 as seed ortholog is 99%.

Group of orthologs #155. Best score 594 bits
Score difference with first non-orthologous sequence - C.neoformans:594 P.pallidum:594

Q5KIL6              	100.00%		D3BC24              	100.00%
Bootstrap support for Q5KIL6 as seed ortholog is 100%.
Bootstrap support for D3BC24 as seed ortholog is 100%.

Group of orthologs #156. Best score 592 bits
Score difference with first non-orthologous sequence - C.neoformans:592 P.pallidum:592

Q5KEU7              	100.00%		D3BDZ2              	100.00%
Bootstrap support for Q5KEU7 as seed ortholog is 100%.
Bootstrap support for D3BDZ2 as seed ortholog is 100%.

Group of orthologs #157. Best score 587 bits
Score difference with first non-orthologous sequence - C.neoformans:587 P.pallidum:587

Q5KGS9              	100.00%		D3B0C2              	100.00%
                    	       		D3AZN2              	42.22%
Bootstrap support for Q5KGS9 as seed ortholog is 100%.
Bootstrap support for D3B0C2 as seed ortholog is 100%.

Group of orthologs #158. Best score 587 bits
Score difference with first non-orthologous sequence - C.neoformans:587 P.pallidum:587

Q5KLD7              	100.00%		D3BRI9              	100.00%
Bootstrap support for Q5KLD7 as seed ortholog is 100%.
Bootstrap support for D3BRI9 as seed ortholog is 100%.

Group of orthologs #159. Best score 585 bits
Score difference with first non-orthologous sequence - C.neoformans:585 P.pallidum:585

P0CR28              	100.00%		D3BB83              	100.00%
Bootstrap support for P0CR28 as seed ortholog is 100%.
Bootstrap support for D3BB83 as seed ortholog is 100%.

Group of orthologs #160. Best score 585 bits
Score difference with first non-orthologous sequence - C.neoformans:585 P.pallidum:585

P0CR26              	100.00%		D3BI12              	100.00%
Bootstrap support for P0CR26 as seed ortholog is 100%.
Bootstrap support for D3BI12 as seed ortholog is 100%.

Group of orthologs #161. Best score 580 bits
Score difference with first non-orthologous sequence - C.neoformans:580 P.pallidum:580

P0CO08              	100.00%		D3B3L3              	100.00%
Bootstrap support for P0CO08 as seed ortholog is 100%.
Bootstrap support for D3B3L3 as seed ortholog is 100%.

Group of orthologs #162. Best score 580 bits
Score difference with first non-orthologous sequence - C.neoformans:580 P.pallidum:212

Q5KIW8              	100.00%		D3B255              	100.00%
Bootstrap support for Q5KIW8 as seed ortholog is 100%.
Bootstrap support for D3B255 as seed ortholog is 100%.

Group of orthologs #163. Best score 579 bits
Score difference with first non-orthologous sequence - C.neoformans:579 P.pallidum:579

Q5KAP2              	100.00%		D3BGX5              	100.00%
Bootstrap support for Q5KAP2 as seed ortholog is 100%.
Bootstrap support for D3BGX5 as seed ortholog is 100%.

Group of orthologs #164. Best score 577 bits
Score difference with first non-orthologous sequence - C.neoformans:577 P.pallidum:577

Q5KKE9              	100.00%		D3BAM6              	100.00%
Bootstrap support for Q5KKE9 as seed ortholog is 100%.
Bootstrap support for D3BAM6 as seed ortholog is 100%.

Group of orthologs #165. Best score 577 bits
Score difference with first non-orthologous sequence - C.neoformans:577 P.pallidum:337

Q5KMQ2              	100.00%		D3BQM3              	100.00%
Bootstrap support for Q5KMQ2 as seed ortholog is 100%.
Bootstrap support for D3BQM3 as seed ortholog is 100%.

Group of orthologs #166. Best score 576 bits
Score difference with first non-orthologous sequence - C.neoformans:576 P.pallidum:576

Q5KH73              	100.00%		D3AY61              	100.00%
Bootstrap support for Q5KH73 as seed ortholog is 100%.
Bootstrap support for D3AY61 as seed ortholog is 100%.

Group of orthologs #167. Best score 576 bits
Score difference with first non-orthologous sequence - C.neoformans:576 P.pallidum:576

Q5KB99              	100.00%		D3BQM7              	100.00%
Bootstrap support for Q5KB99 as seed ortholog is 100%.
Bootstrap support for D3BQM7 as seed ortholog is 100%.

Group of orthologs #168. Best score 575 bits
Score difference with first non-orthologous sequence - C.neoformans:430 P.pallidum:145

Q5K745              	100.00%		D3B2W9              	100.00%
Bootstrap support for Q5K745 as seed ortholog is 100%.
Bootstrap support for D3B2W9 as seed ortholog is 99%.

Group of orthologs #169. Best score 575 bits
Score difference with first non-orthologous sequence - C.neoformans:575 P.pallidum:575

Q5K9R3              	100.00%		D3B6S4              	100.00%
Bootstrap support for Q5K9R3 as seed ortholog is 100%.
Bootstrap support for D3B6S4 as seed ortholog is 100%.

Group of orthologs #170. Best score 574 bits
Score difference with first non-orthologous sequence - C.neoformans:574 P.pallidum:574

Q5KFS5              	100.00%		D3B7L4              	100.00%
Bootstrap support for Q5KFS5 as seed ortholog is 100%.
Bootstrap support for D3B7L4 as seed ortholog is 100%.

Group of orthologs #171. Best score 574 bits
Score difference with first non-orthologous sequence - C.neoformans:574 P.pallidum:574

Q5KJI4              	100.00%		D3BPD1              	100.00%
Bootstrap support for Q5KJI4 as seed ortholog is 100%.
Bootstrap support for D3BPD1 as seed ortholog is 100%.

Group of orthologs #172. Best score 570 bits
Score difference with first non-orthologous sequence - C.neoformans:570 P.pallidum:570

P0CQ22              	100.00%		D3AWW1              	100.00%
Bootstrap support for P0CQ22 as seed ortholog is 100%.
Bootstrap support for D3AWW1 as seed ortholog is 100%.

Group of orthologs #173. Best score 570 bits
Score difference with first non-orthologous sequence - C.neoformans:570 P.pallidum:570

P0CN04              	100.00%		D3B714              	100.00%
Bootstrap support for P0CN04 as seed ortholog is 100%.
Bootstrap support for D3B714 as seed ortholog is 100%.

Group of orthologs #174. Best score 570 bits
Score difference with first non-orthologous sequence - C.neoformans:326 P.pallidum:570

Q5KNG1              	100.00%		D3B143              	100.00%
Bootstrap support for Q5KNG1 as seed ortholog is 100%.
Bootstrap support for D3B143 as seed ortholog is 100%.

Group of orthologs #175. Best score 569 bits
Score difference with first non-orthologous sequence - C.neoformans:569 P.pallidum:569

Q5KAU8              	100.00%		D3BUR5              	100.00%
                    	       		D3B2S5              	20.70%
Bootstrap support for Q5KAU8 as seed ortholog is 100%.
Bootstrap support for D3BUR5 as seed ortholog is 100%.

Group of orthologs #176. Best score 569 bits
Score difference with first non-orthologous sequence - C.neoformans:352 P.pallidum:311

Q5KE58              	100.00%		D3BA83              	100.00%
Bootstrap support for Q5KE58 as seed ortholog is 100%.
Bootstrap support for D3BA83 as seed ortholog is 100%.

Group of orthologs #177. Best score 569 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.pallidum:338

Q5KHV9              	100.00%		D3BDI4              	100.00%
Bootstrap support for Q5KHV9 as seed ortholog is 100%.
Bootstrap support for D3BDI4 as seed ortholog is 100%.

Group of orthologs #178. Best score 568 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.pallidum:459

Q5KIH7              	100.00%		D3AYX0              	100.00%
Bootstrap support for Q5KIH7 as seed ortholog is 100%.
Bootstrap support for D3AYX0 as seed ortholog is 100%.

Group of orthologs #179. Best score 564 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.pallidum:564

Q5KID7              	100.00%		D3AWL5              	100.00%
Bootstrap support for Q5KID7 as seed ortholog is 100%.
Bootstrap support for D3AWL5 as seed ortholog is 100%.

Group of orthologs #180. Best score 564 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.pallidum:191

Q5KD59              	100.00%		D3B4K1              	100.00%
Bootstrap support for Q5KD59 as seed ortholog is 98%.
Bootstrap support for D3B4K1 as seed ortholog is 99%.

Group of orthologs #181. Best score 564 bits
Score difference with first non-orthologous sequence - C.neoformans:564 P.pallidum:564

Q5KAH4              	100.00%		D3BGE1              	100.00%
Bootstrap support for Q5KAH4 as seed ortholog is 100%.
Bootstrap support for D3BGE1 as seed ortholog is 100%.

Group of orthologs #182. Best score 563 bits
Score difference with first non-orthologous sequence - C.neoformans:563 P.pallidum:470

P0CN30              	100.00%		D3BP51              	100.00%
Bootstrap support for P0CN30 as seed ortholog is 100%.
Bootstrap support for D3BP51 as seed ortholog is 100%.

Group of orthologs #183. Best score 563 bits
Score difference with first non-orthologous sequence - C.neoformans:563 P.pallidum:563

Q5KLT9              	100.00%		D3BEC9              	100.00%
Bootstrap support for Q5KLT9 as seed ortholog is 100%.
Bootstrap support for D3BEC9 as seed ortholog is 100%.

Group of orthologs #184. Best score 561 bits
Score difference with first non-orthologous sequence - C.neoformans:561 P.pallidum:561

P0CO92              	100.00%		D3B4I1              	100.00%
Bootstrap support for P0CO92 as seed ortholog is 100%.
Bootstrap support for D3B4I1 as seed ortholog is 100%.

Group of orthologs #185. Best score 560 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:560

Q5K8Q9              	100.00%		D3BTZ2              	100.00%
Bootstrap support for Q5K8Q9 as seed ortholog is 98%.
Bootstrap support for D3BTZ2 as seed ortholog is 100%.

Group of orthologs #186. Best score 559 bits
Score difference with first non-orthologous sequence - C.neoformans:559 P.pallidum:559

Q5KLV5              	100.00%		D3B5U3              	100.00%
Bootstrap support for Q5KLV5 as seed ortholog is 100%.
Bootstrap support for D3B5U3 as seed ortholog is 100%.

Group of orthologs #187. Best score 559 bits
Score difference with first non-orthologous sequence - C.neoformans:559 P.pallidum:119

Q5KIL9              	100.00%		D3BIH4              	100.00%
Bootstrap support for Q5KIL9 as seed ortholog is 100%.
Bootstrap support for D3BIH4 as seed ortholog is 83%.

Group of orthologs #188. Best score 556 bits
Score difference with first non-orthologous sequence - C.neoformans:472 P.pallidum:255

Q5KB93              	100.00%		D3B2M6              	100.00%
Bootstrap support for Q5KB93 as seed ortholog is 100%.
Bootstrap support for D3B2M6 as seed ortholog is 100%.

Group of orthologs #189. Best score 555 bits
Score difference with first non-orthologous sequence - C.neoformans:555 P.pallidum:555

P0CS78              	100.00%		D3AZ34              	100.00%
Bootstrap support for P0CS78 as seed ortholog is 100%.
Bootstrap support for D3AZ34 as seed ortholog is 100%.

Group of orthologs #190. Best score 554 bits
Score difference with first non-orthologous sequence - C.neoformans:554 P.pallidum:554

P0CS34              	100.00%		D3BN75              	100.00%
Bootstrap support for P0CS34 as seed ortholog is 100%.
Bootstrap support for D3BN75 as seed ortholog is 100%.

Group of orthologs #191. Best score 553 bits
Score difference with first non-orthologous sequence - C.neoformans:553 P.pallidum:553

Q5KHN9              	100.00%		D3B0H1              	100.00%
Bootstrap support for Q5KHN9 as seed ortholog is 100%.
Bootstrap support for D3B0H1 as seed ortholog is 100%.

Group of orthologs #192. Best score 552 bits
Score difference with first non-orthologous sequence - C.neoformans:552 P.pallidum:379

Q5KDW0              	100.00%		D3B3K7              	100.00%
Bootstrap support for Q5KDW0 as seed ortholog is 100%.
Bootstrap support for D3B3K7 as seed ortholog is 100%.

Group of orthologs #193. Best score 552 bits
Score difference with first non-orthologous sequence - C.neoformans:552 P.pallidum:552

Q5KJR9              	100.00%		D3AYV1              	100.00%
Bootstrap support for Q5KJR9 as seed ortholog is 100%.
Bootstrap support for D3AYV1 as seed ortholog is 100%.

Group of orthologs #194. Best score 552 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.pallidum:552

Q5KGH3              	100.00%		D3BKP8              	100.00%
Bootstrap support for Q5KGH3 as seed ortholog is 100%.
Bootstrap support for D3BKP8 as seed ortholog is 100%.

Group of orthologs #195. Best score 548 bits
Score difference with first non-orthologous sequence - C.neoformans:548 P.pallidum:548

Q5KBL4              	100.00%		D3B1R9              	100.00%
Bootstrap support for Q5KBL4 as seed ortholog is 100%.
Bootstrap support for D3B1R9 as seed ortholog is 100%.

Group of orthologs #196. Best score 547 bits
Score difference with first non-orthologous sequence - C.neoformans:547 P.pallidum:547

Q5KD10              	100.00%		D3BHG0              	100.00%
Bootstrap support for Q5KD10 as seed ortholog is 100%.
Bootstrap support for D3BHG0 as seed ortholog is 100%.

Group of orthologs #197. Best score 545 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:545

Q5KME1              	100.00%		D3BBY9              	100.00%
Bootstrap support for Q5KME1 as seed ortholog is 100%.
Bootstrap support for D3BBY9 as seed ortholog is 100%.

Group of orthologs #198. Best score 544 bits
Score difference with first non-orthologous sequence - C.neoformans:544 P.pallidum:297

Q5KKU4              	100.00%		D3AW74              	100.00%
Bootstrap support for Q5KKU4 as seed ortholog is 100%.
Bootstrap support for D3AW74 as seed ortholog is 100%.

Group of orthologs #199. Best score 544 bits
Score difference with first non-orthologous sequence - C.neoformans:454 P.pallidum:123

Q5KBB1              	100.00%		D3BRU6              	100.00%
Bootstrap support for Q5KBB1 as seed ortholog is 100%.
Bootstrap support for D3BRU6 as seed ortholog is 99%.

Group of orthologs #200. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:542 P.pallidum:542

Q5K7C3              	100.00%		D3AY16              	100.00%
Bootstrap support for Q5K7C3 as seed ortholog is 100%.
Bootstrap support for D3AY16 as seed ortholog is 100%.

Group of orthologs #201. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.pallidum:116

P0CQ76              	100.00%		D3BB29              	100.00%
Bootstrap support for P0CQ76 as seed ortholog is 100%.
Bootstrap support for D3BB29 as seed ortholog is 99%.

Group of orthologs #202. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:542 P.pallidum:542

Q5K8L8              	100.00%		D3BE83              	100.00%
Bootstrap support for Q5K8L8 as seed ortholog is 100%.
Bootstrap support for D3BE83 as seed ortholog is 100%.

Group of orthologs #203. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:542 P.pallidum:542

Q5KMJ4              	100.00%		D3B3Q9              	100.00%
Bootstrap support for Q5KMJ4 as seed ortholog is 100%.
Bootstrap support for D3B3Q9 as seed ortholog is 100%.

Group of orthologs #204. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:542 P.pallidum:542

Q5K757              	100.00%		D3BRB4              	100.00%
Bootstrap support for Q5K757 as seed ortholog is 100%.
Bootstrap support for D3BRB4 as seed ortholog is 100%.

Group of orthologs #205. Best score 541 bits
Score difference with first non-orthologous sequence - C.neoformans:541 P.pallidum:393

Q5K8J6              	100.00%		D3B0B7              	100.00%
Bootstrap support for Q5K8J6 as seed ortholog is 100%.
Bootstrap support for D3B0B7 as seed ortholog is 100%.

Group of orthologs #206. Best score 539 bits
Score difference with first non-orthologous sequence - C.neoformans:539 P.pallidum:539

Q5KP62              	100.00%		D3B427              	100.00%
Bootstrap support for Q5KP62 as seed ortholog is 100%.
Bootstrap support for D3B427 as seed ortholog is 100%.

Group of orthologs #207. Best score 539 bits
Score difference with first non-orthologous sequence - C.neoformans:539 P.pallidum:539

Q5KP44              	100.00%		D3BQJ8              	100.00%
Bootstrap support for Q5KP44 as seed ortholog is 100%.
Bootstrap support for D3BQJ8 as seed ortholog is 100%.

Group of orthologs #208. Best score 538 bits
Score difference with first non-orthologous sequence - C.neoformans:538 P.pallidum:390

Q5K7R3              	100.00%		D3BPU8              	100.00%
Bootstrap support for Q5K7R3 as seed ortholog is 100%.
Bootstrap support for D3BPU8 as seed ortholog is 100%.

Group of orthologs #209. Best score 538 bits
Score difference with first non-orthologous sequence - C.neoformans:290 P.pallidum:84

Q5KAU0              	100.00%		D3BQP4              	100.00%
Bootstrap support for Q5KAU0 as seed ortholog is 100%.
Bootstrap support for D3BQP4 as seed ortholog is 97%.

Group of orthologs #210. Best score 535 bits
Score difference with first non-orthologous sequence - C.neoformans:535 P.pallidum:535

Q5KI46              	100.00%		D3BAM8              	100.00%
Bootstrap support for Q5KI46 as seed ortholog is 100%.
Bootstrap support for D3BAM8 as seed ortholog is 100%.

Group of orthologs #211. Best score 533 bits
Score difference with first non-orthologous sequence - C.neoformans:310 P.pallidum:289

Q5K7L0              	100.00%		D3AVW9              	100.00%
Bootstrap support for Q5K7L0 as seed ortholog is 100%.
Bootstrap support for D3AVW9 as seed ortholog is 99%.

Group of orthologs #212. Best score 532 bits
Score difference with first non-orthologous sequence - C.neoformans:532 P.pallidum:532

Q5KMG4              	100.00%		D3AY94              	100.00%
Bootstrap support for Q5KMG4 as seed ortholog is 100%.
Bootstrap support for D3AY94 as seed ortholog is 100%.

Group of orthologs #213. Best score 532 bits
Score difference with first non-orthologous sequence - C.neoformans:532 P.pallidum:146

Q5KMR6              	100.00%		D3B313              	100.00%
Bootstrap support for Q5KMR6 as seed ortholog is 100%.
Bootstrap support for D3B313 as seed ortholog is 99%.

Group of orthologs #214. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:530

Q5KLA7              	100.00%		D3BP87              	100.00%
                    	       		D3BH75              	38.37%
Bootstrap support for Q5KLA7 as seed ortholog is 99%.
Bootstrap support for D3BP87 as seed ortholog is 100%.

Group of orthologs #215. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:530 P.pallidum:530

P0CO10              	100.00%		D3B1F9              	100.00%
Bootstrap support for P0CO10 as seed ortholog is 100%.
Bootstrap support for D3B1F9 as seed ortholog is 100%.

Group of orthologs #216. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:530 P.pallidum:530

Q5KGD7              	100.00%		D3B718              	100.00%
Bootstrap support for Q5KGD7 as seed ortholog is 100%.
Bootstrap support for D3B718 as seed ortholog is 100%.

Group of orthologs #217. Best score 529 bits
Score difference with first non-orthologous sequence - C.neoformans:529 P.pallidum:112

Q5KKP9              	100.00%		D3B105              	100.00%
Bootstrap support for Q5KKP9 as seed ortholog is 100%.
Bootstrap support for D3B105 as seed ortholog is 85%.

Group of orthologs #218. Best score 529 bits
Score difference with first non-orthologous sequence - C.neoformans:529 P.pallidum:529

Q5KA27              	100.00%		D3BHQ7              	100.00%
Bootstrap support for Q5KA27 as seed ortholog is 100%.
Bootstrap support for D3BHQ7 as seed ortholog is 100%.

Group of orthologs #219. Best score 525 bits
Score difference with first non-orthologous sequence - C.neoformans:343 P.pallidum:387

Q5KIR5              	100.00%		D3BUA7              	100.00%
Q5KBN2              	15.36%		
Bootstrap support for Q5KIR5 as seed ortholog is 100%.
Bootstrap support for D3BUA7 as seed ortholog is 100%.

Group of orthologs #220. Best score 524 bits
Score difference with first non-orthologous sequence - C.neoformans:524 P.pallidum:524

Q5KDP3              	100.00%		D3BB07              	100.00%
Bootstrap support for Q5KDP3 as seed ortholog is 100%.
Bootstrap support for D3BB07 as seed ortholog is 100%.

Group of orthologs #221. Best score 523 bits
Score difference with first non-orthologous sequence - C.neoformans:523 P.pallidum:523

Q5K8J5              	100.00%		D3BBH0              	100.00%
Bootstrap support for Q5K8J5 as seed ortholog is 100%.
Bootstrap support for D3BBH0 as seed ortholog is 100%.

Group of orthologs #222. Best score 522 bits
Score difference with first non-orthologous sequence - C.neoformans:522 P.pallidum:522

Q5K749              	100.00%		D3AZD2              	100.00%
Bootstrap support for Q5K749 as seed ortholog is 100%.
Bootstrap support for D3AZD2 as seed ortholog is 100%.

Group of orthologs #223. Best score 522 bits
Score difference with first non-orthologous sequence - C.neoformans:522 P.pallidum:92

Q5KE28              	100.00%		D3B9Y8              	100.00%
Bootstrap support for Q5KE28 as seed ortholog is 100%.
Bootstrap support for D3B9Y8 as seed ortholog is 97%.

Group of orthologs #224. Best score 521 bits
Score difference with first non-orthologous sequence - C.neoformans:521 P.pallidum:521

Q5KAN4              	100.00%		D3BFA6              	100.00%
Bootstrap support for Q5KAN4 as seed ortholog is 100%.
Bootstrap support for D3BFA6 as seed ortholog is 100%.

Group of orthologs #225. Best score 516 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.pallidum:302

P0CQ96              	100.00%		D3BNB9              	100.00%
Bootstrap support for P0CQ96 as seed ortholog is 100%.
Bootstrap support for D3BNB9 as seed ortholog is 100%.

Group of orthologs #226. Best score 513 bits
Score difference with first non-orthologous sequence - C.neoformans:395 P.pallidum:333

Q5KEK9              	100.00%		D3AVV8              	100.00%
Bootstrap support for Q5KEK9 as seed ortholog is 100%.
Bootstrap support for D3AVV8 as seed ortholog is 100%.

Group of orthologs #227. Best score 512 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.pallidum:230

P0CP46              	100.00%		D3AVQ3              	100.00%
Bootstrap support for P0CP46 as seed ortholog is 100%.
Bootstrap support for D3AVQ3 as seed ortholog is 99%.

Group of orthologs #228. Best score 512 bits
Score difference with first non-orthologous sequence - C.neoformans:512 P.pallidum:512

Q5K9E3              	100.00%		D3BK20              	100.00%
Bootstrap support for Q5K9E3 as seed ortholog is 100%.
Bootstrap support for D3BK20 as seed ortholog is 100%.

Group of orthologs #229. Best score 512 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.pallidum:417

Q5KI86              	100.00%		D3BQ34              	100.00%
Bootstrap support for Q5KI86 as seed ortholog is 100%.
Bootstrap support for D3BQ34 as seed ortholog is 100%.

Group of orthologs #230. Best score 511 bits
Score difference with first non-orthologous sequence - C.neoformans:435 P.pallidum:118

Q5KHZ4              	100.00%		D3AZ87              	100.00%
Bootstrap support for Q5KHZ4 as seed ortholog is 100%.
Bootstrap support for D3AZ87 as seed ortholog is 99%.

Group of orthologs #231. Best score 510 bits
Score difference with first non-orthologous sequence - C.neoformans:510 P.pallidum:371

Q5KKB4              	100.00%		D3B2K0              	100.00%
Bootstrap support for Q5KKB4 as seed ortholog is 100%.
Bootstrap support for D3B2K0 as seed ortholog is 100%.

Group of orthologs #232. Best score 510 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.pallidum:325

P0CQ82              	100.00%		D3BK57              	100.00%
Bootstrap support for P0CQ82 as seed ortholog is 100%.
Bootstrap support for D3BK57 as seed ortholog is 100%.

Group of orthologs #233. Best score 510 bits
Score difference with first non-orthologous sequence - C.neoformans:510 P.pallidum:510

Q5KE01              	100.00%		D3BGD9              	100.00%
Bootstrap support for Q5KE01 as seed ortholog is 100%.
Bootstrap support for D3BGD9 as seed ortholog is 100%.

Group of orthologs #234. Best score 509 bits
Score difference with first non-orthologous sequence - C.neoformans:509 P.pallidum:509

P0CM38              	100.00%		D3B298              	100.00%
Bootstrap support for P0CM38 as seed ortholog is 100%.
Bootstrap support for D3B298 as seed ortholog is 100%.

Group of orthologs #235. Best score 509 bits
Score difference with first non-orthologous sequence - C.neoformans:509 P.pallidum:82

P0CL92              	100.00%		D3B4X1              	100.00%
Bootstrap support for P0CL92 as seed ortholog is 100%.
Bootstrap support for D3B4X1 as seed ortholog is 55%.
Alternative seed ortholog is D3AVP3 (82 bits away from this cluster)

Group of orthologs #236. Best score 509 bits
Score difference with first non-orthologous sequence - C.neoformans:509 P.pallidum:509

Q5KL04              	100.00%		D3BPC0              	100.00%
Bootstrap support for Q5KL04 as seed ortholog is 100%.
Bootstrap support for D3BPC0 as seed ortholog is 100%.

Group of orthologs #237. Best score 508 bits
Score difference with first non-orthologous sequence - C.neoformans:508 P.pallidum:254

Q5KC30              	100.00%		D3AZ75              	100.00%
Bootstrap support for Q5KC30 as seed ortholog is 100%.
Bootstrap support for D3AZ75 as seed ortholog is 100%.

Group of orthologs #238. Best score 508 bits
Score difference with first non-orthologous sequence - C.neoformans:508 P.pallidum:508

Q5KKV8              	100.00%		D3B0J2              	100.00%
Bootstrap support for Q5KKV8 as seed ortholog is 100%.
Bootstrap support for D3B0J2 as seed ortholog is 100%.

Group of orthologs #239. Best score 504 bits
Score difference with first non-orthologous sequence - C.neoformans:504 P.pallidum:504

Q5KK44              	100.00%		D3B8W3              	100.00%
Q5KK43              	53.85%		
Bootstrap support for Q5KK44 as seed ortholog is 100%.
Bootstrap support for D3B8W3 as seed ortholog is 100%.

Group of orthologs #240. Best score 504 bits
Score difference with first non-orthologous sequence - C.neoformans:504 P.pallidum:271

Q5KM37              	100.00%		D3BPC8              	100.00%
Bootstrap support for Q5KM37 as seed ortholog is 100%.
Bootstrap support for D3BPC8 as seed ortholog is 99%.

Group of orthologs #241. Best score 500 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:270

P0CQ70              	100.00%		D3BMB3              	100.00%
P0CQ72              	11.72%		
Bootstrap support for P0CQ70 as seed ortholog is 100%.
Bootstrap support for D3BMB3 as seed ortholog is 100%.

Group of orthologs #242. Best score 500 bits
Score difference with first non-orthologous sequence - C.neoformans:500 P.pallidum:500

Q5KGK2              	100.00%		D3BCL2              	100.00%
Bootstrap support for Q5KGK2 as seed ortholog is 100%.
Bootstrap support for D3BCL2 as seed ortholog is 100%.

Group of orthologs #243. Best score 500 bits
Score difference with first non-orthologous sequence - C.neoformans:500 P.pallidum:500

P0CL88              	100.00%		D3BP61              	100.00%
Bootstrap support for P0CL88 as seed ortholog is 100%.
Bootstrap support for D3BP61 as seed ortholog is 100%.

Group of orthologs #244. Best score 499 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.pallidum:366

Q5K8Q2              	100.00%		D3B161              	100.00%
Bootstrap support for Q5K8Q2 as seed ortholog is 100%.
Bootstrap support for D3B161 as seed ortholog is 100%.

Group of orthologs #245. Best score 499 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.pallidum:257

P0CR00              	100.00%		D3BK58              	100.00%
Bootstrap support for P0CR00 as seed ortholog is 100%.
Bootstrap support for D3BK58 as seed ortholog is 100%.

Group of orthologs #246. Best score 499 bits
Score difference with first non-orthologous sequence - C.neoformans:499 P.pallidum:499

Q5KAU9              	100.00%		D3BRX9              	100.00%
Bootstrap support for Q5KAU9 as seed ortholog is 100%.
Bootstrap support for D3BRX9 as seed ortholog is 100%.

Group of orthologs #247. Best score 498 bits
Score difference with first non-orthologous sequence - C.neoformans:498 P.pallidum:88

Q5KKA5              	100.00%		D3AYB4              	100.00%
Bootstrap support for Q5KKA5 as seed ortholog is 100%.
Bootstrap support for D3AYB4 as seed ortholog is 98%.

Group of orthologs #248. Best score 497 bits
Score difference with first non-orthologous sequence - C.neoformans:497 P.pallidum:417

Q5K9C7              	100.00%		D3BAH3              	100.00%
Bootstrap support for Q5K9C7 as seed ortholog is 100%.
Bootstrap support for D3BAH3 as seed ortholog is 100%.

Group of orthologs #249. Best score 497 bits
Score difference with first non-orthologous sequence - C.neoformans:287 P.pallidum:233

P0CQ88              	100.00%		D3BEH4              	100.00%
Bootstrap support for P0CQ88 as seed ortholog is 100%.
Bootstrap support for D3BEH4 as seed ortholog is 100%.

Group of orthologs #250. Best score 497 bits
Score difference with first non-orthologous sequence - C.neoformans:497 P.pallidum:371

Q5KFC3              	100.00%		D3BGC4              	100.00%
Bootstrap support for Q5KFC3 as seed ortholog is 100%.
Bootstrap support for D3BGC4 as seed ortholog is 100%.

Group of orthologs #251. Best score 496 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.pallidum:496

Q5KAC2              	100.00%		D3AXU9              	100.00%
Bootstrap support for Q5KAC2 as seed ortholog is 100%.
Bootstrap support for D3AXU9 as seed ortholog is 100%.

Group of orthologs #252. Best score 495 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.pallidum:446

Q5KCS8              	100.00%		D3AZM1              	100.00%
Bootstrap support for Q5KCS8 as seed ortholog is 75%.
Bootstrap support for D3AZM1 as seed ortholog is 100%.

Group of orthologs #253. Best score 492 bits
Score difference with first non-orthologous sequence - C.neoformans:492 P.pallidum:410

Q5KMG8              	100.00%		D3AZP8              	100.00%
Q5K9L7              	26.34%		
Bootstrap support for Q5KMG8 as seed ortholog is 100%.
Bootstrap support for D3AZP8 as seed ortholog is 100%.

Group of orthologs #254. Best score 491 bits
Score difference with first non-orthologous sequence - C.neoformans:491 P.pallidum:491

Q5KI16              	100.00%		D3BA44              	100.00%
Bootstrap support for Q5KI16 as seed ortholog is 100%.
Bootstrap support for D3BA44 as seed ortholog is 100%.

Group of orthologs #255. Best score 491 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:222

Q5KHJ1              	100.00%		D3BEH3              	100.00%
Bootstrap support for Q5KHJ1 as seed ortholog is 99%.
Bootstrap support for D3BEH3 as seed ortholog is 100%.

Group of orthologs #256. Best score 491 bits
Score difference with first non-orthologous sequence - C.neoformans:491 P.pallidum:155

Q5KNC4              	100.00%		D3BKM7              	100.00%
Bootstrap support for Q5KNC4 as seed ortholog is 100%.
Bootstrap support for D3BKM7 as seed ortholog is 100%.

Group of orthologs #257. Best score 490 bits
Score difference with first non-orthologous sequence - C.neoformans:395 P.pallidum:440

Q5K7P9              	100.00%		D3B4F3              	100.00%
Bootstrap support for Q5K7P9 as seed ortholog is 100%.
Bootstrap support for D3B4F3 as seed ortholog is 100%.

Group of orthologs #258. Best score 490 bits
Score difference with first non-orthologous sequence - C.neoformans:490 P.pallidum:490

Q5KP26              	100.00%		D3B9J3              	100.00%
Bootstrap support for Q5KP26 as seed ortholog is 100%.
Bootstrap support for D3B9J3 as seed ortholog is 100%.

Group of orthologs #259. Best score 489 bits
Score difference with first non-orthologous sequence - C.neoformans:489 P.pallidum:402

Q5KQ45              	100.00%		D3B4P1              	100.00%
Bootstrap support for Q5KQ45 as seed ortholog is 100%.
Bootstrap support for D3B4P1 as seed ortholog is 100%.

Group of orthologs #260. Best score 488 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.pallidum:275

Q5KEX3              	100.00%		D3BRC2              	100.00%
Q5K8N2              	8.83%		
Bootstrap support for Q5KEX3 as seed ortholog is 77%.
Bootstrap support for D3BRC2 as seed ortholog is 100%.

Group of orthologs #261. Best score 486 bits
Score difference with first non-orthologous sequence - C.neoformans:486 P.pallidum:486

Q5KIA2              	100.00%		D3AWY9              	100.00%
Bootstrap support for Q5KIA2 as seed ortholog is 100%.
Bootstrap support for D3AWY9 as seed ortholog is 100%.

Group of orthologs #262. Best score 485 bits
Score difference with first non-orthologous sequence - C.neoformans:485 P.pallidum:485

Q5KHJ8              	100.00%		D3B6L3              	100.00%
Bootstrap support for Q5KHJ8 as seed ortholog is 100%.
Bootstrap support for D3B6L3 as seed ortholog is 100%.

Group of orthologs #263. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:483

P0CN74              	100.00%		D3BV45              	100.00%
Bootstrap support for P0CN74 as seed ortholog is 100%.
Bootstrap support for D3BV45 as seed ortholog is 100%.

Group of orthologs #264. Best score 482 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:62

Q5K7X5              	100.00%		D3BTH8              	100.00%
Q5K826              	32.00%		
Bootstrap support for Q5K7X5 as seed ortholog is 100%.
Bootstrap support for D3BTH8 as seed ortholog is 95%.

Group of orthologs #265. Best score 482 bits
Score difference with first non-orthologous sequence - C.neoformans:482 P.pallidum:482

Q5KD08              	100.00%		D3B796              	100.00%
Bootstrap support for Q5KD08 as seed ortholog is 100%.
Bootstrap support for D3B796 as seed ortholog is 100%.

Group of orthologs #266. Best score 482 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.pallidum:203

Q5KLG6              	100.00%		D3B4W2              	100.00%
Bootstrap support for Q5KLG6 as seed ortholog is 90%.
Bootstrap support for D3B4W2 as seed ortholog is 99%.

Group of orthologs #267. Best score 480 bits
Score difference with first non-orthologous sequence - C.neoformans:337 P.pallidum:354

Q5KF69              	100.00%		D3B471              	100.00%
Bootstrap support for Q5KF69 as seed ortholog is 100%.
Bootstrap support for D3B471 as seed ortholog is 100%.

Group of orthologs #268. Best score 480 bits
Score difference with first non-orthologous sequence - C.neoformans:480 P.pallidum:306

Q5KMF5              	100.00%		D3BEH8              	100.00%
Bootstrap support for Q5KMF5 as seed ortholog is 100%.
Bootstrap support for D3BEH8 as seed ortholog is 100%.

Group of orthologs #269. Best score 475 bits
Score difference with first non-orthologous sequence - C.neoformans:475 P.pallidum:401

Q5KDZ3              	100.00%		D3AYY7              	100.00%
Bootstrap support for Q5KDZ3 as seed ortholog is 100%.
Bootstrap support for D3AYY7 as seed ortholog is 100%.

Group of orthologs #270. Best score 474 bits
Score difference with first non-orthologous sequence - C.neoformans:474 P.pallidum:474

Q5KF87              	100.00%		D3B268              	100.00%
Bootstrap support for Q5KF87 as seed ortholog is 100%.
Bootstrap support for D3B268 as seed ortholog is 100%.

Group of orthologs #271. Best score 472 bits
Score difference with first non-orthologous sequence - C.neoformans:472 P.pallidum:472

P0CP26              	100.00%		D3AY91              	100.00%
Bootstrap support for P0CP26 as seed ortholog is 100%.
Bootstrap support for D3AY91 as seed ortholog is 100%.

Group of orthologs #272. Best score 472 bits
Score difference with first non-orthologous sequence - C.neoformans:472 P.pallidum:472

P0CR52              	100.00%		D3BBU3              	100.00%
Bootstrap support for P0CR52 as seed ortholog is 100%.
Bootstrap support for D3BBU3 as seed ortholog is 100%.

Group of orthologs #273. Best score 472 bits
Score difference with first non-orthologous sequence - C.neoformans:472 P.pallidum:472

Q5KIA5              	100.00%		D3B3T8              	100.00%
Bootstrap support for Q5KIA5 as seed ortholog is 100%.
Bootstrap support for D3B3T8 as seed ortholog is 100%.

Group of orthologs #274. Best score 472 bits
Score difference with first non-orthologous sequence - C.neoformans:472 P.pallidum:472

Q5KHJ6              	100.00%		D3BAE9              	100.00%
Bootstrap support for Q5KHJ6 as seed ortholog is 100%.
Bootstrap support for D3BAE9 as seed ortholog is 100%.

Group of orthologs #275. Best score 471 bits
Score difference with first non-orthologous sequence - C.neoformans:471 P.pallidum:471

Q5KLU5              	100.00%		D3BPW9              	100.00%
Bootstrap support for Q5KLU5 as seed ortholog is 100%.
Bootstrap support for D3BPW9 as seed ortholog is 100%.

Group of orthologs #276. Best score 470 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:220

Q5KDB7              	100.00%		D3BHJ6              	100.00%
Bootstrap support for Q5KDB7 as seed ortholog is 99%.
Bootstrap support for D3BHJ6 as seed ortholog is 99%.

Group of orthologs #277. Best score 469 bits
Score difference with first non-orthologous sequence - C.neoformans:469 P.pallidum:469

Q5K6V0              	100.00%		D3B6W1              	100.00%
Bootstrap support for Q5K6V0 as seed ortholog is 100%.
Bootstrap support for D3B6W1 as seed ortholog is 100%.

Group of orthologs #278. Best score 468 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:468

Q5K9A0              	100.00%		D3B7I3              	100.00%
Bootstrap support for Q5K9A0 as seed ortholog is 99%.
Bootstrap support for D3B7I3 as seed ortholog is 100%.

Group of orthologs #279. Best score 468 bits
Score difference with first non-orthologous sequence - C.neoformans:468 P.pallidum:468

Q5KQ22              	100.00%		D3B344              	100.00%
Bootstrap support for Q5KQ22 as seed ortholog is 100%.
Bootstrap support for D3B344 as seed ortholog is 100%.

Group of orthologs #280. Best score 468 bits
Score difference with first non-orthologous sequence - C.neoformans:397 P.pallidum:468

Q5KFA8              	100.00%		D3BJX1              	100.00%
Bootstrap support for Q5KFA8 as seed ortholog is 100%.
Bootstrap support for D3BJX1 as seed ortholog is 100%.

Group of orthologs #281. Best score 468 bits
Score difference with first non-orthologous sequence - C.neoformans:468 P.pallidum:468

P0CQ34              	100.00%		D3BTQ4              	100.00%
Bootstrap support for P0CQ34 as seed ortholog is 100%.
Bootstrap support for D3BTQ4 as seed ortholog is 100%.

Group of orthologs #282. Best score 467 bits
Score difference with first non-orthologous sequence - C.neoformans:467 P.pallidum:410

Q5KKJ5              	100.00%		D3BE82              	100.00%
Bootstrap support for Q5KKJ5 as seed ortholog is 100%.
Bootstrap support for D3BE82 as seed ortholog is 100%.

Group of orthologs #283. Best score 466 bits
Score difference with first non-orthologous sequence - C.neoformans:466 P.pallidum:393

Q5KE74              	100.00%		D3BE54              	100.00%
                    	       		D3BBB8              	15.24%
Bootstrap support for Q5KE74 as seed ortholog is 100%.
Bootstrap support for D3BE54 as seed ortholog is 100%.

Group of orthologs #284. Best score 466 bits
Score difference with first non-orthologous sequence - C.neoformans:466 P.pallidum:466

Q5K8F7              	100.00%		D3BTG6              	100.00%
Bootstrap support for Q5K8F7 as seed ortholog is 100%.
Bootstrap support for D3BTG6 as seed ortholog is 100%.

Group of orthologs #285. Best score 465 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.pallidum:378

Q5KHS6              	100.00%		D3B3C8              	100.00%
Bootstrap support for Q5KHS6 as seed ortholog is 100%.
Bootstrap support for D3B3C8 as seed ortholog is 100%.

Group of orthologs #286. Best score 465 bits
Score difference with first non-orthologous sequence - C.neoformans:308 P.pallidum:118

Q5KPW4              	100.00%		D3B962              	100.00%
Bootstrap support for Q5KPW4 as seed ortholog is 100%.
Bootstrap support for D3B962 as seed ortholog is 99%.

Group of orthologs #287. Best score 465 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.pallidum:136

P0CQ74              	100.00%		D3BSG3              	100.00%
Bootstrap support for P0CQ74 as seed ortholog is 100%.
Bootstrap support for D3BSG3 as seed ortholog is 99%.

Group of orthologs #288. Best score 464 bits
Score difference with first non-orthologous sequence - C.neoformans:464 P.pallidum:375

Q5KGF2              	100.00%		D3B1H0              	100.00%
Bootstrap support for Q5KGF2 as seed ortholog is 100%.
Bootstrap support for D3B1H0 as seed ortholog is 100%.

Group of orthologs #289. Best score 463 bits
Score difference with first non-orthologous sequence - C.neoformans:463 P.pallidum:463

Q5KG72              	100.00%		D3B4I5              	100.00%
Bootstrap support for Q5KG72 as seed ortholog is 100%.
Bootstrap support for D3B4I5 as seed ortholog is 100%.

Group of orthologs #290. Best score 463 bits
Score difference with first non-orthologous sequence - C.neoformans:350 P.pallidum:311

Q5KP35              	100.00%		D3BJP0              	100.00%
Bootstrap support for Q5KP35 as seed ortholog is 100%.
Bootstrap support for D3BJP0 as seed ortholog is 100%.

Group of orthologs #291. Best score 459 bits
Score difference with first non-orthologous sequence - C.neoformans:459 P.pallidum:397

P0CR40              	100.00%		D3BBC2              	100.00%
Bootstrap support for P0CR40 as seed ortholog is 100%.
Bootstrap support for D3BBC2 as seed ortholog is 100%.

Group of orthologs #292. Best score 459 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:400

Q5KI40              	100.00%		D3BDA3              	100.00%
Bootstrap support for Q5KI40 as seed ortholog is 100%.
Bootstrap support for D3BDA3 as seed ortholog is 100%.

Group of orthologs #293. Best score 458 bits
Score difference with first non-orthologous sequence - C.neoformans:458 P.pallidum:458

Q5K9L0              	100.00%		D3B866              	100.00%
Bootstrap support for Q5K9L0 as seed ortholog is 100%.
Bootstrap support for D3B866 as seed ortholog is 100%.

Group of orthologs #294. Best score 458 bits
Score difference with first non-orthologous sequence - C.neoformans:458 P.pallidum:458

Q5KFZ4              	100.00%		D3B9H8              	100.00%
Bootstrap support for Q5KFZ4 as seed ortholog is 100%.
Bootstrap support for D3B9H8 as seed ortholog is 100%.

Group of orthologs #295. Best score 457 bits
Score difference with first non-orthologous sequence - C.neoformans:457 P.pallidum:457

Q5KP72              	100.00%		D3BLI7              	100.00%
Bootstrap support for Q5KP72 as seed ortholog is 100%.
Bootstrap support for D3BLI7 as seed ortholog is 100%.

Group of orthologs #296. Best score 456 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.pallidum:456

Q5K9A9              	100.00%		D3BUD7              	100.00%
                    	       		D3BKB8              	20.18%
Bootstrap support for Q5K9A9 as seed ortholog is 95%.
Bootstrap support for D3BUD7 as seed ortholog is 100%.

Group of orthologs #297. Best score 456 bits
Score difference with first non-orthologous sequence - C.neoformans:456 P.pallidum:456

P0CQ08              	100.00%		D3B512              	100.00%
Bootstrap support for P0CQ08 as seed ortholog is 100%.
Bootstrap support for D3B512 as seed ortholog is 100%.

Group of orthologs #298. Best score 456 bits
Score difference with first non-orthologous sequence - C.neoformans:456 P.pallidum:456

Q5KH01              	100.00%		D3BB96              	100.00%
Bootstrap support for Q5KH01 as seed ortholog is 100%.
Bootstrap support for D3BB96 as seed ortholog is 100%.

Group of orthologs #299. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.pallidum:204

P0CQ92              	100.00%		D3B6C6              	100.00%
Bootstrap support for P0CQ92 as seed ortholog is 100%.
Bootstrap support for D3B6C6 as seed ortholog is 100%.

Group of orthologs #300. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.pallidum:454

Q5KII1              	100.00%		D3B2V3              	100.00%
Bootstrap support for Q5KII1 as seed ortholog is 80%.
Bootstrap support for D3B2V3 as seed ortholog is 100%.

Group of orthologs #301. Best score 453 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:453

Q5KHS2              	100.00%		D3B2M8              	100.00%
Bootstrap support for Q5KHS2 as seed ortholog is 100%.
Bootstrap support for D3B2M8 as seed ortholog is 100%.

Group of orthologs #302. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.pallidum:56

Q5KHP4              	100.00%		D3BG45              	100.00%
Bootstrap support for Q5KHP4 as seed ortholog is 100%.
Bootstrap support for D3BG45 as seed ortholog is 78%.

Group of orthologs #303. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.pallidum:330

Q5KE92              	100.00%		D3BJG8              	100.00%
Bootstrap support for Q5KE92 as seed ortholog is 100%.
Bootstrap support for D3BJG8 as seed ortholog is 100%.

Group of orthologs #304. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.pallidum:451

Q5KCZ4              	100.00%		D3BNT9              	100.00%
Bootstrap support for Q5KCZ4 as seed ortholog is 100%.
Bootstrap support for D3BNT9 as seed ortholog is 100%.

Group of orthologs #305. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:450 P.pallidum:220

P0CM88              	100.00%		D3BEC2              	100.00%
Bootstrap support for P0CM88 as seed ortholog is 100%.
Bootstrap support for D3BEC2 as seed ortholog is 100%.

Group of orthologs #306. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.pallidum:365

Q5KNC3              	100.00%		D3BI15              	100.00%
Bootstrap support for Q5KNC3 as seed ortholog is 100%.
Bootstrap support for D3BI15 as seed ortholog is 100%.

Group of orthologs #307. Best score 449 bits
Score difference with first non-orthologous sequence - C.neoformans:449 P.pallidum:326

Q5KDQ7              	100.00%		D3B7P5              	100.00%
Bootstrap support for Q5KDQ7 as seed ortholog is 100%.
Bootstrap support for D3B7P5 as seed ortholog is 100%.

Group of orthologs #308. Best score 447 bits
Score difference with first non-orthologous sequence - C.neoformans:447 P.pallidum:447

Q5KKS9              	100.00%		D3BAR8              	100.00%
Bootstrap support for Q5KKS9 as seed ortholog is 100%.
Bootstrap support for D3BAR8 as seed ortholog is 100%.

Group of orthologs #309. Best score 446 bits
Score difference with first non-orthologous sequence - C.neoformans:446 P.pallidum:446

Q5KK90              	100.00%		D3BMN8              	100.00%
Bootstrap support for Q5KK90 as seed ortholog is 100%.
Bootstrap support for D3BMN8 as seed ortholog is 100%.

Group of orthologs #310. Best score 443 bits
Score difference with first non-orthologous sequence - C.neoformans:443 P.pallidum:443

Q5KAM4              	100.00%		D3BJD9              	100.00%
Bootstrap support for Q5KAM4 as seed ortholog is 100%.
Bootstrap support for D3BJD9 as seed ortholog is 100%.

Group of orthologs #311. Best score 442 bits
Score difference with first non-orthologous sequence - C.neoformans:442 P.pallidum:442

Q5KDT3              	100.00%		D3BB47              	100.00%
Bootstrap support for Q5KDT3 as seed ortholog is 100%.
Bootstrap support for D3BB47 as seed ortholog is 100%.

Group of orthologs #312. Best score 441 bits
Score difference with first non-orthologous sequence - C.neoformans:441 P.pallidum:441

Q5KF32              	100.00%		D3BMS6              	100.00%
Bootstrap support for Q5KF32 as seed ortholog is 100%.
Bootstrap support for D3BMS6 as seed ortholog is 100%.

Group of orthologs #313. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.pallidum:384

Q5KN95              	100.00%		D3B6H9              	100.00%
                    	       		D3B3G3              	10.66%
Bootstrap support for Q5KN95 as seed ortholog is 100%.
Bootstrap support for D3B6H9 as seed ortholog is 100%.

Group of orthologs #314. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.pallidum:400

P0CS70              	100.00%		D3AVG7              	100.00%
Bootstrap support for P0CS70 as seed ortholog is 100%.
Bootstrap support for D3AVG7 as seed ortholog is 100%.

Group of orthologs #315. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.pallidum:227

Q5KDT4              	100.00%		D3BBV0              	100.00%
Bootstrap support for Q5KDT4 as seed ortholog is 100%.
Bootstrap support for D3BBV0 as seed ortholog is 100%.

Group of orthologs #316. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.pallidum:440

Q5KH19              	100.00%		D3BD10              	100.00%
Bootstrap support for Q5KH19 as seed ortholog is 100%.
Bootstrap support for D3BD10 as seed ortholog is 100%.

Group of orthologs #317. Best score 439 bits
Score difference with first non-orthologous sequence - C.neoformans:439 P.pallidum:439

Q5KAB5              	100.00%		D3BUT9              	100.00%
Bootstrap support for Q5KAB5 as seed ortholog is 100%.
Bootstrap support for D3BUT9 as seed ortholog is 100%.

Group of orthologs #318. Best score 438 bits
Score difference with first non-orthologous sequence - C.neoformans:438 P.pallidum:438

Q5KKK6              	100.00%		D3AXG3              	100.00%
Bootstrap support for Q5KKK6 as seed ortholog is 100%.
Bootstrap support for D3AXG3 as seed ortholog is 100%.

Group of orthologs #319. Best score 438 bits
Score difference with first non-orthologous sequence - C.neoformans:438 P.pallidum:438

P0CN28              	100.00%		D3BKG1              	100.00%
Bootstrap support for P0CN28 as seed ortholog is 100%.
Bootstrap support for D3BKG1 as seed ortholog is 100%.

Group of orthologs #320. Best score 438 bits
Score difference with first non-orthologous sequence - C.neoformans:438 P.pallidum:438

Q5KLR9              	100.00%		D3B7H9              	100.00%
Bootstrap support for Q5KLR9 as seed ortholog is 100%.
Bootstrap support for D3B7H9 as seed ortholog is 100%.

Group of orthologs #321. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:436 P.pallidum:436

Q5KDD7              	100.00%		D3BDL9              	100.00%
                    	       		D3BUG8              	17.67%
                    	       		D3BUG6              	6.81%
Bootstrap support for Q5KDD7 as seed ortholog is 100%.
Bootstrap support for D3BDL9 as seed ortholog is 100%.

Group of orthologs #322. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.pallidum:436

Q5KHS3              	100.00%		D3BEX2              	100.00%
Bootstrap support for Q5KHS3 as seed ortholog is 100%.
Bootstrap support for D3BEX2 as seed ortholog is 100%.

Group of orthologs #323. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.pallidum:436

Q5KMM8              	100.00%		D3BPQ4              	100.00%
Bootstrap support for Q5KMM8 as seed ortholog is 99%.
Bootstrap support for D3BPQ4 as seed ortholog is 100%.

Group of orthologs #324. Best score 435 bits
Score difference with first non-orthologous sequence - C.neoformans:343 P.pallidum:322

Q5K707              	100.00%		D3BNV2              	100.00%
Bootstrap support for Q5K707 as seed ortholog is 100%.
Bootstrap support for D3BNV2 as seed ortholog is 100%.

Group of orthologs #325. Best score 433 bits
Score difference with first non-orthologous sequence - C.neoformans:433 P.pallidum:433

P0CO20              	100.00%		D3BCL5              	100.00%
Bootstrap support for P0CO20 as seed ortholog is 100%.
Bootstrap support for D3BCL5 as seed ortholog is 100%.

Group of orthologs #326. Best score 433 bits
Score difference with first non-orthologous sequence - C.neoformans:433 P.pallidum:335

Q5KF83              	100.00%		D3B6R2              	100.00%
Bootstrap support for Q5KF83 as seed ortholog is 100%.
Bootstrap support for D3B6R2 as seed ortholog is 100%.

Group of orthologs #327. Best score 433 bits
Score difference with first non-orthologous sequence - C.neoformans:433 P.pallidum:433

Q5KJN4              	100.00%		D3BGA4              	100.00%
Bootstrap support for Q5KJN4 as seed ortholog is 100%.
Bootstrap support for D3BGA4 as seed ortholog is 100%.

Group of orthologs #328. Best score 431 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:431

Q5K8E2              	100.00%		D3B731              	100.00%
Bootstrap support for Q5K8E2 as seed ortholog is 88%.
Bootstrap support for D3B731 as seed ortholog is 100%.

Group of orthologs #329. Best score 431 bits
Score difference with first non-orthologous sequence - C.neoformans:431 P.pallidum:431

Q5KKS5              	100.00%		D3AWC6              	100.00%
Bootstrap support for Q5KKS5 as seed ortholog is 100%.
Bootstrap support for D3AWC6 as seed ortholog is 100%.

Group of orthologs #330. Best score 431 bits
Score difference with first non-orthologous sequence - C.neoformans:431 P.pallidum:431

P0CQ46              	100.00%		D3BJN3              	100.00%
Bootstrap support for P0CQ46 as seed ortholog is 100%.
Bootstrap support for D3BJN3 as seed ortholog is 100%.

Group of orthologs #331. Best score 428 bits
Score difference with first non-orthologous sequence - C.neoformans:428 P.pallidum:340

Q5KH38              	100.00%		D3BC91              	100.00%
Bootstrap support for Q5KH38 as seed ortholog is 100%.
Bootstrap support for D3BC91 as seed ortholog is 100%.

Group of orthologs #332. Best score 426 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:426

Q5KGM9              	100.00%		D3B5H0              	100.00%
Bootstrap support for Q5KGM9 as seed ortholog is 100%.
Bootstrap support for D3B5H0 as seed ortholog is 100%.

Group of orthologs #333. Best score 426 bits
Score difference with first non-orthologous sequence - C.neoformans:426 P.pallidum:169

Q5KH88              	100.00%		D3BRA7              	100.00%
Bootstrap support for Q5KH88 as seed ortholog is 100%.
Bootstrap support for D3BRA7 as seed ortholog is 99%.

Group of orthologs #334. Best score 425 bits
Score difference with first non-orthologous sequence - C.neoformans:425 P.pallidum:425

Q5KGH1              	100.00%		D3BBV3              	100.00%
Bootstrap support for Q5KGH1 as seed ortholog is 100%.
Bootstrap support for D3BBV3 as seed ortholog is 100%.

Group of orthologs #335. Best score 425 bits
Score difference with first non-orthologous sequence - C.neoformans:425 P.pallidum:425

Q5KPL5              	100.00%		D3BHH5              	100.00%
Bootstrap support for Q5KPL5 as seed ortholog is 100%.
Bootstrap support for D3BHH5 as seed ortholog is 100%.

Group of orthologs #336. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:423 P.pallidum:64

Q5KF44              	100.00%		D3BFZ3              	100.00%
                    	       		D3AZ45              	97.08%
                    	       		D3AZ27              	48.37%
                    	       		D3BS52              	11.93%
                    	       		D3BLL1              	9.01%
                    	       		D3BI50              	8.49%
                    	       		D3AZ03              	5.31%
Bootstrap support for Q5KF44 as seed ortholog is 100%.
Bootstrap support for D3BFZ3 as seed ortholog is 82%.

Group of orthologs #337. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:423 P.pallidum:345

Q5KJI8              	100.00%		D3B6G4              	100.00%
Bootstrap support for Q5KJI8 as seed ortholog is 100%.
Bootstrap support for D3B6G4 as seed ortholog is 100%.

Group of orthologs #338. Best score 422 bits
Score difference with first non-orthologous sequence - C.neoformans:422 P.pallidum:422

Q5KP39              	100.00%		D3B606              	100.00%
Bootstrap support for Q5KP39 as seed ortholog is 100%.
Bootstrap support for D3B606 as seed ortholog is 100%.

Group of orthologs #339. Best score 422 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.pallidum:422

Q5KP10              	100.00%		D3BK71              	100.00%
Bootstrap support for Q5KP10 as seed ortholog is 99%.
Bootstrap support for D3BK71 as seed ortholog is 100%.

Group of orthologs #340. Best score 421 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.pallidum:152

Q5KN57              	100.00%		D3BKA7              	100.00%
Bootstrap support for Q5KN57 as seed ortholog is 100%.
Bootstrap support for D3BKA7 as seed ortholog is 99%.

Group of orthologs #341. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.pallidum:419

Q5KDV3              	100.00%		D3BUM9              	100.00%
Q5KJX0              	73.69%		D3AXQ3              	19.92%
Bootstrap support for Q5KDV3 as seed ortholog is 100%.
Bootstrap support for D3BUM9 as seed ortholog is 100%.

Group of orthologs #342. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.pallidum:208

Q5KK89              	100.00%		D3BCI5              	100.00%
Bootstrap support for Q5KK89 as seed ortholog is 100%.
Bootstrap support for D3BCI5 as seed ortholog is 99%.

Group of orthologs #343. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.pallidum:419

Q5KIN5              	100.00%		D3BF15              	100.00%
Bootstrap support for Q5KIN5 as seed ortholog is 100%.
Bootstrap support for D3BF15 as seed ortholog is 100%.

Group of orthologs #344. Best score 418 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.pallidum:418

P0CQ14              	100.00%		D3AXJ0              	100.00%
Bootstrap support for P0CQ14 as seed ortholog is 100%.
Bootstrap support for D3AXJ0 as seed ortholog is 100%.

Group of orthologs #345. Best score 416 bits
Score difference with first non-orthologous sequence - C.neoformans:416 P.pallidum:416

Q5KFJ4              	100.00%		D3B568              	100.00%
Bootstrap support for Q5KFJ4 as seed ortholog is 100%.
Bootstrap support for D3B568 as seed ortholog is 100%.

Group of orthologs #346. Best score 415 bits
Score difference with first non-orthologous sequence - C.neoformans:415 P.pallidum:415

P0CO94              	100.00%		D3B6X9              	100.00%
Bootstrap support for P0CO94 as seed ortholog is 100%.
Bootstrap support for D3B6X9 as seed ortholog is 100%.

Group of orthologs #347. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:413 P.pallidum:413

Q5KJ21              	100.00%		D3BUD8              	100.00%
Q5K7P5              	16.63%		
Q5KHG5              	14.36%		
Bootstrap support for Q5KJ21 as seed ortholog is 100%.
Bootstrap support for D3BUD8 as seed ortholog is 100%.

Group of orthologs #348. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:413 P.pallidum:212

Q5KJY4              	100.00%		D3AY64              	100.00%
Bootstrap support for Q5KJY4 as seed ortholog is 100%.
Bootstrap support for D3AY64 as seed ortholog is 100%.

Group of orthologs #349. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.pallidum:191

Q5KLZ4              	100.00%		D3B626              	100.00%
Bootstrap support for Q5KLZ4 as seed ortholog is 100%.
Bootstrap support for D3B626 as seed ortholog is 100%.

Group of orthologs #350. Best score 412 bits
Score difference with first non-orthologous sequence - C.neoformans:412 P.pallidum:412

Q5K9Q6              	100.00%		D3B6G3              	100.00%
Bootstrap support for Q5K9Q6 as seed ortholog is 100%.
Bootstrap support for D3B6G3 as seed ortholog is 100%.

Group of orthologs #351. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:411 P.pallidum:411

Q5K9Z1              	100.00%		D3BPW8              	100.00%
Bootstrap support for Q5K9Z1 as seed ortholog is 100%.
Bootstrap support for D3BPW8 as seed ortholog is 100%.

Group of orthologs #352. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:411 P.pallidum:171

Q5KDR8              	100.00%		D3BPU6              	100.00%
Bootstrap support for Q5KDR8 as seed ortholog is 100%.
Bootstrap support for D3BPU6 as seed ortholog is 100%.

Group of orthologs #353. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:411 P.pallidum:411

Q5KMC0              	100.00%		D3BMN0              	100.00%
Bootstrap support for Q5KMC0 as seed ortholog is 100%.
Bootstrap support for D3BMN0 as seed ortholog is 100%.

Group of orthologs #354. Best score 409 bits
Score difference with first non-orthologous sequence - C.neoformans:266 P.pallidum:258

Q5KKM6              	100.00%		D3BFF8              	100.00%
Bootstrap support for Q5KKM6 as seed ortholog is 100%.
Bootstrap support for D3BFF8 as seed ortholog is 100%.

Group of orthologs #355. Best score 406 bits
Score difference with first non-orthologous sequence - C.neoformans:406 P.pallidum:406

Q5KAB8              	100.00%		D3BCX3              	100.00%
Bootstrap support for Q5KAB8 as seed ortholog is 100%.
Bootstrap support for D3BCX3 as seed ortholog is 100%.

Group of orthologs #356. Best score 406 bits
Score difference with first non-orthologous sequence - C.neoformans:406 P.pallidum:153

Q5KII9              	100.00%		D3BT28              	100.00%
Bootstrap support for Q5KII9 as seed ortholog is 100%.
Bootstrap support for D3BT28 as seed ortholog is 100%.

Group of orthologs #357. Best score 405 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.pallidum:315

P0CS48              	100.00%		D3AVR8              	100.00%
Bootstrap support for P0CS48 as seed ortholog is 100%.
Bootstrap support for D3AVR8 as seed ortholog is 100%.

Group of orthologs #358. Best score 405 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.pallidum:405

Q5KJC6              	100.00%		D3B5Y1              	100.00%
Bootstrap support for Q5KJC6 as seed ortholog is 100%.
Bootstrap support for D3B5Y1 as seed ortholog is 100%.

Group of orthologs #359. Best score 404 bits
Score difference with first non-orthologous sequence - C.neoformans:404 P.pallidum:404

Q5KMS5              	100.00%		D3B1Z3              	100.00%
Bootstrap support for Q5KMS5 as seed ortholog is 100%.
Bootstrap support for D3B1Z3 as seed ortholog is 100%.

Group of orthologs #360. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.pallidum:248

P0CR10              	100.00%		D3B9E0              	100.00%
Bootstrap support for P0CR10 as seed ortholog is 100%.
Bootstrap support for D3B9E0 as seed ortholog is 100%.

Group of orthologs #361. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:403 P.pallidum:403

Q5KLM1              	100.00%		D3AVT5              	100.00%
Bootstrap support for Q5KLM1 as seed ortholog is 100%.
Bootstrap support for D3AVT5 as seed ortholog is 100%.

Group of orthologs #362. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:403 P.pallidum:114

Q5KEN3              	100.00%		D3BDA2              	100.00%
Bootstrap support for Q5KEN3 as seed ortholog is 100%.
Bootstrap support for D3BDA2 as seed ortholog is 99%.

Group of orthologs #363. Best score 402 bits
Score difference with first non-orthologous sequence - C.neoformans:402 P.pallidum:402

Q5KCT5              	100.00%		D3AZB4              	100.00%
Bootstrap support for Q5KCT5 as seed ortholog is 100%.
Bootstrap support for D3AZB4 as seed ortholog is 100%.

Group of orthologs #364. Best score 400 bits
Score difference with first non-orthologous sequence - C.neoformans:400 P.pallidum:400

Q5KNJ3              	100.00%		D3AW64              	100.00%
Bootstrap support for Q5KNJ3 as seed ortholog is 100%.
Bootstrap support for D3AW64 as seed ortholog is 100%.

Group of orthologs #365. Best score 400 bits
Score difference with first non-orthologous sequence - C.neoformans:400 P.pallidum:158

Q5KHB5              	100.00%		D3BHU2              	100.00%
Bootstrap support for Q5KHB5 as seed ortholog is 100%.
Bootstrap support for D3BHU2 as seed ortholog is 99%.

Group of orthologs #366. Best score 397 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.pallidum:397

Q5KN70              	100.00%		D3BSP0              	100.00%
Bootstrap support for Q5KN70 as seed ortholog is 100%.
Bootstrap support for D3BSP0 as seed ortholog is 100%.

Group of orthologs #367. Best score 396 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.pallidum:396

Q5K758              	100.00%		D3B2T4              	100.00%
Bootstrap support for Q5K758 as seed ortholog is 91%.
Bootstrap support for D3B2T4 as seed ortholog is 100%.

Group of orthologs #368. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.pallidum:394

P0CN90              	100.00%		D3BA88              	100.00%
Q5KDP5              	5.26%		
Bootstrap support for P0CN90 as seed ortholog is 100%.
Bootstrap support for D3BA88 as seed ortholog is 100%.

Group of orthologs #369. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.pallidum:394

P0CS46              	100.00%		D3BM07              	100.00%
Bootstrap support for P0CS46 as seed ortholog is 100%.
Bootstrap support for D3BM07 as seed ortholog is 100%.

Group of orthologs #370. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.pallidum:394

P0CS60              	100.00%		D3BN56              	100.00%
Bootstrap support for P0CS60 as seed ortholog is 100%.
Bootstrap support for D3BN56 as seed ortholog is 100%.

Group of orthologs #371. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.pallidum:394

Q5KPQ4              	100.00%		D3BL94              	100.00%
Bootstrap support for Q5KPQ4 as seed ortholog is 100%.
Bootstrap support for D3BL94 as seed ortholog is 100%.

Group of orthologs #372. Best score 392 bits
Score difference with first non-orthologous sequence - C.neoformans:392 P.pallidum:266

Q5KK28              	100.00%		D3AVS0              	100.00%
Bootstrap support for Q5KK28 as seed ortholog is 100%.
Bootstrap support for D3AVS0 as seed ortholog is 100%.

Group of orthologs #373. Best score 391 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.pallidum:222

Q5KEJ1              	100.00%		D3B1I2              	100.00%
Bootstrap support for Q5KEJ1 as seed ortholog is 99%.
Bootstrap support for D3B1I2 as seed ortholog is 100%.

Group of orthologs #374. Best score 391 bits
Score difference with first non-orthologous sequence - C.neoformans:391 P.pallidum:391

Q5KKG6              	100.00%		D3B0M1              	100.00%
Bootstrap support for Q5KKG6 as seed ortholog is 100%.
Bootstrap support for D3B0M1 as seed ortholog is 100%.

Group of orthologs #375. Best score 391 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.pallidum:391

Q5KJQ2              	100.00%		D3B695              	100.00%
Bootstrap support for Q5KJQ2 as seed ortholog is 100%.
Bootstrap support for D3B695 as seed ortholog is 100%.

Group of orthologs #376. Best score 391 bits
Score difference with first non-orthologous sequence - C.neoformans:391 P.pallidum:391

Q5KDX5              	100.00%		D3BKC5              	100.00%
Bootstrap support for Q5KDX5 as seed ortholog is 100%.
Bootstrap support for D3BKC5 as seed ortholog is 100%.

Group of orthologs #377. Best score 389 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:389

Q5KCK2              	100.00%		D3BIK6              	100.00%
                    	       		D3BIK5              	52.50%
                    	       		D3B222              	36.69%
Bootstrap support for Q5KCK2 as seed ortholog is 100%.
Bootstrap support for D3BIK6 as seed ortholog is 100%.

Group of orthologs #378. Best score 389 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.pallidum:389

Q5KBV4              	100.00%		D3B6H6              	100.00%
Bootstrap support for Q5KBV4 as seed ortholog is 100%.
Bootstrap support for D3B6H6 as seed ortholog is 100%.

Group of orthologs #379. Best score 388 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.pallidum:388

Q5KK29              	100.00%		D3AZB0              	100.00%
Bootstrap support for Q5KK29 as seed ortholog is 100%.
Bootstrap support for D3AZB0 as seed ortholog is 100%.

Group of orthologs #380. Best score 387 bits
Score difference with first non-orthologous sequence - C.neoformans:387 P.pallidum:387

Q5KJ97              	100.00%		D3AVU8              	100.00%
Bootstrap support for Q5KJ97 as seed ortholog is 100%.
Bootstrap support for D3AVU8 as seed ortholog is 100%.

Group of orthologs #381. Best score 387 bits
Score difference with first non-orthologous sequence - C.neoformans:387 P.pallidum:387

Q5KML3              	100.00%		D3BQC3              	100.00%
Bootstrap support for Q5KML3 as seed ortholog is 100%.
Bootstrap support for D3BQC3 as seed ortholog is 100%.

Group of orthologs #382. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.pallidum:23

Q5KKV1              	100.00%		D3BMU7              	100.00%
Bootstrap support for Q5KKV1 as seed ortholog is 88%.
Bootstrap support for D3BMU7 as seed ortholog is 76%.

Group of orthologs #383. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.pallidum:386

Q5KIZ9              	100.00%		D3BQ86              	100.00%
Bootstrap support for Q5KIZ9 as seed ortholog is 100%.
Bootstrap support for D3BQ86 as seed ortholog is 100%.

Group of orthologs #384. Best score 384 bits
Score difference with first non-orthologous sequence - C.neoformans:384 P.pallidum:57

Q5KLK8              	100.00%		D3B8Z2              	100.00%
                    	       		D3BQ49              	30.52%
                    	       		D3BLZ8              	22.91%
Bootstrap support for Q5KLK8 as seed ortholog is 100%.
Bootstrap support for D3B8Z2 as seed ortholog is 77%.

Group of orthologs #385. Best score 384 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.pallidum:384

Q5KB65              	100.00%		D3BV36              	100.00%
                    	       		D3B2K8              	8.59%
Bootstrap support for Q5KB65 as seed ortholog is 99%.
Bootstrap support for D3BV36 as seed ortholog is 100%.

Group of orthologs #386. Best score 384 bits
Score difference with first non-orthologous sequence - C.neoformans:384 P.pallidum:384

Q5KLM5              	100.00%		D3BDI3              	100.00%
Bootstrap support for Q5KLM5 as seed ortholog is 100%.
Bootstrap support for D3BDI3 as seed ortholog is 100%.

Group of orthologs #387. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:383 P.pallidum:383

P0CO58              	100.00%		D3B481              	100.00%
Bootstrap support for P0CO58 as seed ortholog is 100%.
Bootstrap support for D3B481 as seed ortholog is 100%.

Group of orthologs #388. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:383 P.pallidum:383

Q5KAU7              	100.00%		D3B072              	100.00%
Bootstrap support for Q5KAU7 as seed ortholog is 100%.
Bootstrap support for D3B072 as seed ortholog is 100%.

Group of orthologs #389. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:231

P0CQ90              	100.00%		D3B9K7              	100.00%
Bootstrap support for P0CQ90 as seed ortholog is 100%.
Bootstrap support for D3B9K7 as seed ortholog is 100%.

Group of orthologs #390. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.pallidum:314

Q5KCJ8              	100.00%		D3BE97              	100.00%
Bootstrap support for Q5KCJ8 as seed ortholog is 100%.
Bootstrap support for D3BE97 as seed ortholog is 100%.

Group of orthologs #391. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:145

Q5KP01              	100.00%		D3BPS6              	100.00%
Bootstrap support for Q5KP01 as seed ortholog is 99%.
Bootstrap support for D3BPS6 as seed ortholog is 99%.

Group of orthologs #392. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:383 P.pallidum:383

Q5KNU1              	100.00%		D3BU83              	100.00%
Bootstrap support for Q5KNU1 as seed ortholog is 100%.
Bootstrap support for D3BU83 as seed ortholog is 100%.

Group of orthologs #393. Best score 382 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:203

Q5KJV0              	100.00%		D3BJJ1              	100.00%
                    	       		D3BCX1              	7.94%
Bootstrap support for Q5KJV0 as seed ortholog is 99%.
Bootstrap support for D3BJJ1 as seed ortholog is 100%.

Group of orthologs #394. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:381 P.pallidum:381

Q5KA97              	100.00%		D3AXR9              	100.00%
Bootstrap support for Q5KA97 as seed ortholog is 100%.
Bootstrap support for D3AXR9 as seed ortholog is 100%.

Group of orthologs #395. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:54

Q5KLR7              	100.00%		D3BUD0              	100.00%
Bootstrap support for Q5KLR7 as seed ortholog is 99%.
Bootstrap support for D3BUD0 as seed ortholog is 86%.

Group of orthologs #396. Best score 380 bits
Score difference with first non-orthologous sequence - C.neoformans:380 P.pallidum:282

Q5KHG2              	100.00%		D3AXT3              	100.00%
Bootstrap support for Q5KHG2 as seed ortholog is 100%.
Bootstrap support for D3AXT3 as seed ortholog is 100%.

Group of orthologs #397. Best score 380 bits
Score difference with first non-orthologous sequence - C.neoformans:380 P.pallidum:263

Q5KJD3              	100.00%		D3BR29              	100.00%
Bootstrap support for Q5KJD3 as seed ortholog is 100%.
Bootstrap support for D3BR29 as seed ortholog is 100%.

Group of orthologs #398. Best score 379 bits
Score difference with first non-orthologous sequence - C.neoformans:379 P.pallidum:379

Q5KA00              	100.00%		D3B7T8              	100.00%
Bootstrap support for Q5KA00 as seed ortholog is 100%.
Bootstrap support for D3B7T8 as seed ortholog is 100%.

Group of orthologs #399. Best score 379 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.pallidum:254

Q5KED7              	100.00%		D3B6D9              	100.00%
Bootstrap support for Q5KED7 as seed ortholog is 100%.
Bootstrap support for D3B6D9 as seed ortholog is 100%.

Group of orthologs #400. Best score 379 bits
Score difference with first non-orthologous sequence - C.neoformans:379 P.pallidum:379

Q5KKG9              	100.00%		D3BP70              	100.00%
Bootstrap support for Q5KKG9 as seed ortholog is 100%.
Bootstrap support for D3BP70 as seed ortholog is 100%.

Group of orthologs #401. Best score 378 bits
Score difference with first non-orthologous sequence - C.neoformans:378 P.pallidum:328

Q5KBU1              	100.00%		D3AZM5              	100.00%
Bootstrap support for Q5KBU1 as seed ortholog is 100%.
Bootstrap support for D3AZM5 as seed ortholog is 100%.

Group of orthologs #402. Best score 378 bits
Score difference with first non-orthologous sequence - C.neoformans:378 P.pallidum:378

Q5KMM7              	100.00%		D3BUK1              	100.00%
Bootstrap support for Q5KMM7 as seed ortholog is 100%.
Bootstrap support for D3BUK1 as seed ortholog is 100%.

Group of orthologs #403. Best score 377 bits
Score difference with first non-orthologous sequence - C.neoformans:377 P.pallidum:377

Q5KDE7              	100.00%		D3BED6              	100.00%
Bootstrap support for Q5KDE7 as seed ortholog is 100%.
Bootstrap support for D3BED6 as seed ortholog is 100%.

Group of orthologs #404. Best score 376 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.pallidum:376

Q5KL14              	100.00%		D3B5L4              	100.00%
Bootstrap support for Q5KL14 as seed ortholog is 99%.
Bootstrap support for D3B5L4 as seed ortholog is 100%.

Group of orthologs #405. Best score 375 bits
Score difference with first non-orthologous sequence - C.neoformans:375 P.pallidum:375

Q5K7P2              	100.00%		D3BSM1              	100.00%
Bootstrap support for Q5K7P2 as seed ortholog is 100%.
Bootstrap support for D3BSM1 as seed ortholog is 100%.

Group of orthologs #406. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:200

Q5KL60              	100.00%		D3B2D6              	100.00%
                    	       		D3AZ71              	8.72%
Bootstrap support for Q5KL60 as seed ortholog is 89%.
Bootstrap support for D3B2D6 as seed ortholog is 99%.

Group of orthologs #407. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.pallidum:224

Q5KMP3              	100.00%		D3BV44              	100.00%
Bootstrap support for Q5KMP3 as seed ortholog is 100%.
Bootstrap support for D3BV44 as seed ortholog is 100%.

Group of orthologs #408. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.pallidum:188

Q5K8Z6              	100.00%		D3AVX5              	100.00%
Bootstrap support for Q5K8Z6 as seed ortholog is 100%.
Bootstrap support for D3AVX5 as seed ortholog is 100%.

Group of orthologs #409. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.pallidum:373

Q5KAC5              	100.00%		D3AWK7              	100.00%
Bootstrap support for Q5KAC5 as seed ortholog is 100%.
Bootstrap support for D3AWK7 as seed ortholog is 100%.

Group of orthologs #410. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.pallidum:217

Q5KBC8              	100.00%		D3B9A5              	100.00%
Bootstrap support for Q5KBC8 as seed ortholog is 56%.
Alternative seed ortholog is Q5KP84 (5 bits away from this cluster)
Bootstrap support for D3B9A5 as seed ortholog is 100%.

Group of orthologs #411. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.pallidum:129

P0CQ66              	100.00%		D3BEA1              	100.00%
Bootstrap support for P0CQ66 as seed ortholog is 75%.
Bootstrap support for D3BEA1 as seed ortholog is 99%.

Group of orthologs #412. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.pallidum:373

Q5KLF5              	100.00%		D3B6P0              	100.00%
Bootstrap support for Q5KLF5 as seed ortholog is 100%.
Bootstrap support for D3B6P0 as seed ortholog is 100%.

Group of orthologs #413. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.pallidum:219

Q5KEG3              	100.00%		D3BS65              	100.00%
Bootstrap support for Q5KEG3 as seed ortholog is 100%.
Bootstrap support for D3BS65 as seed ortholog is 100%.

Group of orthologs #414. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:315 P.pallidum:154

Q5KIM3              	100.00%		D3BR06              	100.00%
Bootstrap support for Q5KIM3 as seed ortholog is 100%.
Bootstrap support for D3BR06 as seed ortholog is 99%.

Group of orthologs #415. Best score 372 bits
Score difference with first non-orthologous sequence - C.neoformans:372 P.pallidum:372

Q5KPR1              	100.00%		D3BN16              	100.00%
Bootstrap support for Q5KPR1 as seed ortholog is 100%.
Bootstrap support for D3BN16 as seed ortholog is 100%.

Group of orthologs #416. Best score 371 bits
Score difference with first non-orthologous sequence - C.neoformans:371 P.pallidum:371

Q5KNR0              	100.00%		D3AY97              	100.00%
Bootstrap support for Q5KNR0 as seed ortholog is 100%.
Bootstrap support for D3AY97 as seed ortholog is 100%.

Group of orthologs #417. Best score 371 bits
Score difference with first non-orthologous sequence - C.neoformans:371 P.pallidum:282

P0CP88              	100.00%		D3BEV0              	100.00%
Bootstrap support for P0CP88 as seed ortholog is 100%.
Bootstrap support for D3BEV0 as seed ortholog is 100%.

Group of orthologs #418. Best score 371 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.pallidum:371

Q5K761              	100.00%		D3BSA4              	100.00%
Bootstrap support for Q5K761 as seed ortholog is 99%.
Bootstrap support for D3BSA4 as seed ortholog is 100%.

Group of orthologs #419. Best score 369 bits
Score difference with first non-orthologous sequence - C.neoformans:369 P.pallidum:369

Q5KB64              	100.00%		D3B3B2              	100.00%
Bootstrap support for Q5KB64 as seed ortholog is 100%.
Bootstrap support for D3B3B2 as seed ortholog is 100%.

Group of orthologs #420. Best score 369 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.pallidum:369

Q5KKX9              	100.00%		D3BVN2              	100.00%
Bootstrap support for Q5KKX9 as seed ortholog is 100%.
Bootstrap support for D3BVN2 as seed ortholog is 100%.

Group of orthologs #421. Best score 368 bits
Score difference with first non-orthologous sequence - C.neoformans:368 P.pallidum:368

P0CP20              	100.00%		D3BQ08              	100.00%
Bootstrap support for P0CP20 as seed ortholog is 100%.
Bootstrap support for D3BQ08 as seed ortholog is 100%.

Group of orthologs #422. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.pallidum:84

Q5KEQ4              	100.00%		D3B5B2              	100.00%
Bootstrap support for Q5KEQ4 as seed ortholog is 100%.
Bootstrap support for D3B5B2 as seed ortholog is 99%.

Group of orthologs #423. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:366 P.pallidum:73

Q5KI17              	100.00%		D3B892              	100.00%
Bootstrap support for Q5KI17 as seed ortholog is 100%.
Bootstrap support for D3B892 as seed ortholog is 92%.

Group of orthologs #424. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:366 P.pallidum:366

Q5KAF2              	100.00%		D3BJC7              	100.00%
Bootstrap support for Q5KAF2 as seed ortholog is 100%.
Bootstrap support for D3BJC7 as seed ortholog is 100%.

Group of orthologs #425. Best score 365 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.pallidum:365

Q5K7N0              	100.00%		D3BEC7              	100.00%
Bootstrap support for Q5K7N0 as seed ortholog is 100%.
Bootstrap support for D3BEC7 as seed ortholog is 100%.

Group of orthologs #426. Best score 365 bits
Score difference with first non-orthologous sequence - C.neoformans:365 P.pallidum:365

Q5K8W1              	100.00%		D3BNZ1              	100.00%
Bootstrap support for Q5K8W1 as seed ortholog is 100%.
Bootstrap support for D3BNZ1 as seed ortholog is 100%.

Group of orthologs #427. Best score 364 bits
Score difference with first non-orthologous sequence - C.neoformans:364 P.pallidum:364

Q5KHT1              	100.00%		D3B0D6              	100.00%
Bootstrap support for Q5KHT1 as seed ortholog is 100%.
Bootstrap support for D3B0D6 as seed ortholog is 100%.

Group of orthologs #428. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:363 P.pallidum:363

Q5KPN7              	100.00%		D3B2H8              	100.00%
Bootstrap support for Q5KPN7 as seed ortholog is 100%.
Bootstrap support for D3B2H8 as seed ortholog is 100%.

Group of orthologs #429. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:59

Q5KAN2              	100.00%		D3BIR2              	100.00%
Bootstrap support for Q5KAN2 as seed ortholog is 99%.
Bootstrap support for D3BIR2 as seed ortholog is 99%.

Group of orthologs #430. Best score 362 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.pallidum:201

Q5K9J9              	100.00%		D3BKR5              	100.00%
Bootstrap support for Q5K9J9 as seed ortholog is 99%.
Bootstrap support for D3BKR5 as seed ortholog is 99%.

Group of orthologs #431. Best score 360 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.pallidum:360

Q5KQ06              	100.00%		D3AWT2              	100.00%
Bootstrap support for Q5KQ06 as seed ortholog is 100%.
Bootstrap support for D3AWT2 as seed ortholog is 100%.

Group of orthologs #432. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:359 P.pallidum:300

Q5K9K1              	100.00%		D3AWP9              	100.00%
Bootstrap support for Q5K9K1 as seed ortholog is 100%.
Bootstrap support for D3AWP9 as seed ortholog is 100%.

Group of orthologs #433. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:359 P.pallidum:359

Q5KFS1              	100.00%		D3B2S4              	100.00%
Bootstrap support for Q5KFS1 as seed ortholog is 100%.
Bootstrap support for D3B2S4 as seed ortholog is 100%.

Group of orthologs #434. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:359 P.pallidum:359

Q5K8Z3              	100.00%		D3BFD7              	100.00%
Bootstrap support for Q5K8Z3 as seed ortholog is 100%.
Bootstrap support for D3BFD7 as seed ortholog is 100%.

Group of orthologs #435. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:359 P.pallidum:190

Q5KBY0              	100.00%		D3BJ28              	100.00%
Bootstrap support for Q5KBY0 as seed ortholog is 100%.
Bootstrap support for D3BJ28 as seed ortholog is 99%.

Group of orthologs #436. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:358 P.pallidum:358

Q5KHZ2              	100.00%		D3B3M9              	100.00%
Bootstrap support for Q5KHZ2 as seed ortholog is 100%.
Bootstrap support for D3B3M9 as seed ortholog is 100%.

Group of orthologs #437. Best score 357 bits
Score difference with first non-orthologous sequence - C.neoformans:357 P.pallidum:250

Q5K9D3              	100.00%		D3B0D7              	100.00%
Bootstrap support for Q5K9D3 as seed ortholog is 100%.
Bootstrap support for D3B0D7 as seed ortholog is 99%.

Group of orthologs #438. Best score 357 bits
Score difference with first non-orthologous sequence - C.neoformans:357 P.pallidum:82

Q5KE89              	100.00%		D3BAU8              	100.00%
Bootstrap support for Q5KE89 as seed ortholog is 100%.
Bootstrap support for D3BAU8 as seed ortholog is 98%.

Group of orthologs #439. Best score 357 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.pallidum:46

Q5K8Q3              	100.00%		D3BNB3              	100.00%
Bootstrap support for Q5K8Q3 as seed ortholog is 78%.
Bootstrap support for D3BNB3 as seed ortholog is 73%.
Alternative seed ortholog is D3BKJ0 (46 bits away from this cluster)

Group of orthologs #440. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.pallidum:356

Q5KGV7              	100.00%		D3AYN6              	100.00%
Bootstrap support for Q5KGV7 as seed ortholog is 100%.
Bootstrap support for D3AYN6 as seed ortholog is 100%.

Group of orthologs #441. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.pallidum:356

Q5K8I1              	100.00%		D3BCH5              	100.00%
Bootstrap support for Q5K8I1 as seed ortholog is 100%.
Bootstrap support for D3BCH5 as seed ortholog is 100%.

Group of orthologs #442. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:356

Q5KKE4              	100.00%		D3BP86              	100.00%
Bootstrap support for Q5KKE4 as seed ortholog is 97%.
Bootstrap support for D3BP86 as seed ortholog is 100%.

Group of orthologs #443. Best score 355 bits
Score difference with first non-orthologous sequence - C.neoformans:355 P.pallidum:355

Q5KND5              	100.00%		D3BM59              	100.00%
Bootstrap support for Q5KND5 as seed ortholog is 100%.
Bootstrap support for D3BM59 as seed ortholog is 100%.

Group of orthologs #444. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.pallidum:52

Q5KCV6              	100.00%		D3BBA2              	100.00%
                    	       		D3AW28              	6.84%
Bootstrap support for Q5KCV6 as seed ortholog is 76%.
Bootstrap support for D3BBA2 as seed ortholog is 71%.
Alternative seed ortholog is D3BKJ0 (52 bits away from this cluster)

Group of orthologs #445. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.pallidum:354

Q5KCX8              	100.00%		D3BMW4              	100.00%
Bootstrap support for Q5KCX8 as seed ortholog is 100%.
Bootstrap support for D3BMW4 as seed ortholog is 100%.

Group of orthologs #446. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.pallidum:354

Q5KMY7              	100.00%		D3BN73              	100.00%
Bootstrap support for Q5KMY7 as seed ortholog is 100%.
Bootstrap support for D3BN73 as seed ortholog is 100%.

Group of orthologs #447. Best score 353 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.pallidum:353

Q5KGR5              	100.00%		D3AZG6              	100.00%
Bootstrap support for Q5KGR5 as seed ortholog is 100%.
Bootstrap support for D3AZG6 as seed ortholog is 100%.

Group of orthologs #448. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:352 P.pallidum:352

P0CQ60              	100.00%		D3B3Z7              	100.00%
Bootstrap support for P0CQ60 as seed ortholog is 100%.
Bootstrap support for D3B3Z7 as seed ortholog is 100%.

Group of orthologs #449. Best score 351 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.pallidum:351

Q5KIS9              	100.00%		D3B7Y2              	100.00%
Bootstrap support for Q5KIS9 as seed ortholog is 100%.
Bootstrap support for D3B7Y2 as seed ortholog is 100%.

Group of orthologs #450. Best score 351 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.pallidum:351

Q5KII4              	100.00%		D3BIZ7              	100.00%
Bootstrap support for Q5KII4 as seed ortholog is 100%.
Bootstrap support for D3BIZ7 as seed ortholog is 100%.

Group of orthologs #451. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:350 P.pallidum:350

Q5K972              	100.00%		D3B114              	100.00%
Bootstrap support for Q5K972 as seed ortholog is 100%.
Bootstrap support for D3B114 as seed ortholog is 100%.

Group of orthologs #452. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:350 P.pallidum:350

Q5KDW3              	100.00%		D3AZL0              	100.00%
Bootstrap support for Q5KDW3 as seed ortholog is 100%.
Bootstrap support for D3AZL0 as seed ortholog is 100%.

Group of orthologs #453. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:350 P.pallidum:105

Q5KK64              	100.00%		D3B9P6              	100.00%
Bootstrap support for Q5KK64 as seed ortholog is 100%.
Bootstrap support for D3B9P6 as seed ortholog is 98%.

Group of orthologs #454. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:350 P.pallidum:350

Q5KH85              	100.00%		D3BUZ4              	100.00%
Bootstrap support for Q5KH85 as seed ortholog is 100%.
Bootstrap support for D3BUZ4 as seed ortholog is 100%.

Group of orthologs #455. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.pallidum:349

P0CR86              	100.00%		D3B1P9              	100.00%
Bootstrap support for P0CR86 as seed ortholog is 100%.
Bootstrap support for D3B1P9 as seed ortholog is 100%.

Group of orthologs #456. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.pallidum:349

Q5KLS1              	100.00%		D3B0Z8              	100.00%
Bootstrap support for Q5KLS1 as seed ortholog is 100%.
Bootstrap support for D3B0Z8 as seed ortholog is 100%.

Group of orthologs #457. Best score 348 bits
Score difference with first non-orthologous sequence - C.neoformans:348 P.pallidum:255

Q5KDP4              	100.00%		D3BA80              	100.00%
Bootstrap support for Q5KDP4 as seed ortholog is 100%.
Bootstrap support for D3BA80 as seed ortholog is 100%.

Group of orthologs #458. Best score 348 bits
Score difference with first non-orthologous sequence - C.neoformans:348 P.pallidum:348

Q5KIH5              	100.00%		D3BEF1              	100.00%
Bootstrap support for Q5KIH5 as seed ortholog is 100%.
Bootstrap support for D3BEF1 as seed ortholog is 100%.

Group of orthologs #459. Best score 347 bits
Score difference with first non-orthologous sequence - C.neoformans:347 P.pallidum:347

Q5KFM3              	100.00%		D3BQ30              	100.00%
Bootstrap support for Q5KFM3 as seed ortholog is 100%.
Bootstrap support for D3BQ30 as seed ortholog is 100%.

Group of orthologs #460. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:346 P.pallidum:56

Q5KMG1              	100.00%		D3AW75              	100.00%
Q5K8R8              	25.36%		
Bootstrap support for Q5KMG1 as seed ortholog is 100%.
Bootstrap support for D3AW75 as seed ortholog is 91%.

Group of orthologs #461. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:346 P.pallidum:61

Q5KCC8              	100.00%		D3B6F1              	100.00%
Bootstrap support for Q5KCC8 as seed ortholog is 100%.
Bootstrap support for D3B6F1 as seed ortholog is 93%.

Group of orthologs #462. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.pallidum:344

P0CN18              	100.00%		D3B4Z6              	100.00%
Bootstrap support for P0CN18 as seed ortholog is 100%.
Bootstrap support for D3B4Z6 as seed ortholog is 100%.

Group of orthologs #463. Best score 343 bits
Score difference with first non-orthologous sequence - C.neoformans:343 P.pallidum:343

Q5KHU9              	100.00%		D3AXC9              	100.00%
Bootstrap support for Q5KHU9 as seed ortholog is 100%.
Bootstrap support for D3AXC9 as seed ortholog is 100%.

Group of orthologs #464. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.pallidum:342

P0CQ24              	100.00%		D3B6R8              	100.00%
Bootstrap support for P0CQ24 as seed ortholog is 100%.
Bootstrap support for D3B6R8 as seed ortholog is 100%.

Group of orthologs #465. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.pallidum:342

Q5KKT0              	100.00%		D3BDY0              	100.00%
Bootstrap support for Q5KKT0 as seed ortholog is 100%.
Bootstrap support for D3BDY0 as seed ortholog is 100%.

Group of orthologs #466. Best score 341 bits
Score difference with first non-orthologous sequence - C.neoformans:341 P.pallidum:265

Q5KJJ1              	100.00%		D3AXN9              	100.00%
Bootstrap support for Q5KJJ1 as seed ortholog is 100%.
Bootstrap support for D3AXN9 as seed ortholog is 100%.

Group of orthologs #467. Best score 341 bits
Score difference with first non-orthologous sequence - C.neoformans:341 P.pallidum:341

P0CR72              	100.00%		D3BVL2              	100.00%
Bootstrap support for P0CR72 as seed ortholog is 100%.
Bootstrap support for D3BVL2 as seed ortholog is 100%.

Group of orthologs #468. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.pallidum:340

Q5KJG7              	100.00%		D3BCN3              	100.00%
Bootstrap support for Q5KJG7 as seed ortholog is 100%.
Bootstrap support for D3BCN3 as seed ortholog is 100%.

Group of orthologs #469. Best score 339 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:339

Q5KDK0              	100.00%		D3BAI4              	100.00%
Bootstrap support for Q5KDK0 as seed ortholog is 100%.
Bootstrap support for D3BAI4 as seed ortholog is 100%.

Group of orthologs #470. Best score 338 bits
Score difference with first non-orthologous sequence - C.neoformans:338 P.pallidum:338

P0CM24              	100.00%		D3B3Z0              	100.00%
Bootstrap support for P0CM24 as seed ortholog is 100%.
Bootstrap support for D3B3Z0 as seed ortholog is 100%.

Group of orthologs #471. Best score 337 bits
Score difference with first non-orthologous sequence - C.neoformans:337 P.pallidum:337

Q5KPH3              	100.00%		D3BEA4              	100.00%
Bootstrap support for Q5KPH3 as seed ortholog is 100%.
Bootstrap support for D3BEA4 as seed ortholog is 100%.

Group of orthologs #472. Best score 336 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.pallidum:336

Q5KAZ7              	100.00%		D3B3W0              	100.00%
Bootstrap support for Q5KAZ7 as seed ortholog is 100%.
Bootstrap support for D3B3W0 as seed ortholog is 100%.

Group of orthologs #473. Best score 336 bits
Score difference with first non-orthologous sequence - C.neoformans:336 P.pallidum:336

Q5KJQ1              	100.00%		D3B7T3              	100.00%
Bootstrap support for Q5KJQ1 as seed ortholog is 100%.
Bootstrap support for D3B7T3 as seed ortholog is 100%.

Group of orthologs #474. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:334 P.pallidum:334

Q5KEZ5              	100.00%		D3B3A9              	100.00%
Bootstrap support for Q5KEZ5 as seed ortholog is 100%.
Bootstrap support for D3B3A9 as seed ortholog is 100%.

Group of orthologs #475. Best score 333 bits
Score difference with first non-orthologous sequence - C.neoformans:333 P.pallidum:333

P0CN46              	100.00%		D3BBM5              	100.00%
Bootstrap support for P0CN46 as seed ortholog is 100%.
Bootstrap support for D3BBM5 as seed ortholog is 100%.

Group of orthologs #476. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:7 P.pallidum:85

P0CP68              	100.00%		D3BBN0              	100.00%
Bootstrap support for P0CP68 as seed ortholog is 57%.
Alternative seed ortholog is P0CP66 (7 bits away from this cluster)
Bootstrap support for D3BBN0 as seed ortholog is 99%.

Group of orthologs #477. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:332 P.pallidum:332

Q5KA07              	100.00%		D3BIE7              	100.00%
Bootstrap support for Q5KA07 as seed ortholog is 100%.
Bootstrap support for D3BIE7 as seed ortholog is 100%.

Group of orthologs #478. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:199

Q5K8F6              	100.00%		D3BKN4              	100.00%
Bootstrap support for Q5K8F6 as seed ortholog is 98%.
Bootstrap support for D3BKN4 as seed ortholog is 100%.

Group of orthologs #479. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.pallidum:331

Q5KLT3              	100.00%		D3AZS9              	100.00%
Bootstrap support for Q5KLT3 as seed ortholog is 100%.
Bootstrap support for D3AZS9 as seed ortholog is 100%.

Group of orthologs #480. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.pallidum:330

Q5KFU4              	100.00%		D3B2U8              	100.00%
Bootstrap support for Q5KFU4 as seed ortholog is 100%.
Bootstrap support for D3B2U8 as seed ortholog is 100%.

Group of orthologs #481. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.pallidum:119

Q5KKQ4              	100.00%		D3B485              	100.00%
Bootstrap support for Q5KKQ4 as seed ortholog is 100%.
Bootstrap support for D3B485 as seed ortholog is 99%.

Group of orthologs #482. Best score 329 bits
Score difference with first non-orthologous sequence - C.neoformans:329 P.pallidum:255

Q5KAX6              	100.00%		D3BI40              	100.00%
Bootstrap support for Q5KAX6 as seed ortholog is 100%.
Bootstrap support for D3BI40 as seed ortholog is 100%.

Group of orthologs #483. Best score 329 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:230

Q5KNM0              	100.00%		D3BGV8              	100.00%
Bootstrap support for Q5KNM0 as seed ortholog is 99%.
Bootstrap support for D3BGV8 as seed ortholog is 100%.

Group of orthologs #484. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.pallidum:328

Q5K7W5              	100.00%		D3B8T4              	100.00%
Bootstrap support for Q5K7W5 as seed ortholog is 100%.
Bootstrap support for D3B8T4 as seed ortholog is 100%.

Group of orthologs #485. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.pallidum:328

Q5KPG7              	100.00%		D3BGP9              	100.00%
Bootstrap support for Q5KPG7 as seed ortholog is 99%.
Bootstrap support for D3BGP9 as seed ortholog is 100%.

Group of orthologs #486. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:327 P.pallidum:327

Q5KQ94              	100.00%		D3B501              	100.00%
Bootstrap support for Q5KQ94 as seed ortholog is 100%.
Bootstrap support for D3B501 as seed ortholog is 100%.

Group of orthologs #487. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:327 P.pallidum:327

Q5KDR1              	100.00%		D3BIF4              	100.00%
Bootstrap support for Q5KDR1 as seed ortholog is 100%.
Bootstrap support for D3BIF4 as seed ortholog is 100%.

Group of orthologs #488. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.pallidum:327

Q5KN13              	100.00%		D3BI20              	100.00%
Bootstrap support for Q5KN13 as seed ortholog is 100%.
Bootstrap support for D3BI20 as seed ortholog is 100%.

Group of orthologs #489. Best score 326 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:254

Q5KNQ9              	100.00%		D3B9R3              	100.00%
Bootstrap support for Q5KNQ9 as seed ortholog is 99%.
Bootstrap support for D3B9R3 as seed ortholog is 100%.

Group of orthologs #490. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:12 P.pallidum:47

Q5KPS8              	100.00%		D3BRV8              	100.00%
                    	       		D3B1J0              	6.30%
Bootstrap support for Q5KPS8 as seed ortholog is 65%.
Alternative seed ortholog is P0CN96 (12 bits away from this cluster)
Bootstrap support for D3BRV8 as seed ortholog is 92%.

Group of orthologs #491. Best score 323 bits
Score difference with first non-orthologous sequence - C.neoformans:323 P.pallidum:323

P0CN44              	100.00%		D3BQG1              	100.00%
Bootstrap support for P0CN44 as seed ortholog is 100%.
Bootstrap support for D3BQG1 as seed ortholog is 100%.

Group of orthologs #492. Best score 323 bits
Score difference with first non-orthologous sequence - C.neoformans:323 P.pallidum:323

Q5KGN0              	100.00%		D3BT39              	100.00%
Bootstrap support for Q5KGN0 as seed ortholog is 100%.
Bootstrap support for D3BT39 as seed ortholog is 100%.

Group of orthologs #493. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:322

Q5KJS8              	100.00%		D3B205              	100.00%
                    	       		D3B2A7              	42.29%
Bootstrap support for Q5KJS8 as seed ortholog is 99%.
Bootstrap support for D3B205 as seed ortholog is 100%.

Group of orthologs #494. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:322

Q5K796              	100.00%		D3B3A5              	100.00%
Bootstrap support for Q5K796 as seed ortholog is 100%.
Bootstrap support for D3B3A5 as seed ortholog is 100%.

Group of orthologs #495. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:322

Q5KCW2              	100.00%		D3B6J5              	100.00%
Bootstrap support for Q5KCW2 as seed ortholog is 100%.
Bootstrap support for D3B6J5 as seed ortholog is 100%.

Group of orthologs #496. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:322

Q5K6Y3              	100.00%		D3BFF5              	100.00%
Bootstrap support for Q5K6Y3 as seed ortholog is 100%.
Bootstrap support for D3BFF5 as seed ortholog is 100%.

Group of orthologs #497. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:322

Q5KQ95              	100.00%		D3B9T8              	100.00%
Bootstrap support for Q5KQ95 as seed ortholog is 100%.
Bootstrap support for D3B9T8 as seed ortholog is 100%.

Group of orthologs #498. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:322

Q5KJE3              	100.00%		D3BM76              	100.00%
Bootstrap support for Q5KJE3 as seed ortholog is 100%.
Bootstrap support for D3BM76 as seed ortholog is 100%.

Group of orthologs #499. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.pallidum:322

Q5KH75              	100.00%		D3BRX2              	100.00%
Bootstrap support for Q5KH75 as seed ortholog is 100%.
Bootstrap support for D3BRX2 as seed ortholog is 100%.

Group of orthologs #500. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.pallidum:321

Q5KHM9              	100.00%		D3BQD9              	100.00%
                    	       		D3B2E3              	8.57%
Bootstrap support for Q5KHM9 as seed ortholog is 100%.
Bootstrap support for D3BQD9 as seed ortholog is 100%.

Group of orthologs #501. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.pallidum:321

Q5KJQ8              	100.00%		D3B632              	100.00%
Bootstrap support for Q5KJQ8 as seed ortholog is 100%.
Bootstrap support for D3B632 as seed ortholog is 100%.

Group of orthologs #502. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.pallidum:321

Q5KAS7              	100.00%		D3BKY4              	100.00%
Bootstrap support for Q5KAS7 as seed ortholog is 100%.
Bootstrap support for D3BKY4 as seed ortholog is 100%.

Group of orthologs #503. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.pallidum:224

Q5KJI7              	100.00%		D3BUD5              	100.00%
Bootstrap support for Q5KJI7 as seed ortholog is 100%.
Bootstrap support for D3BUD5 as seed ortholog is 99%.

Group of orthologs #504. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:320 P.pallidum:320

Q5KEV1              	100.00%		D3B6G8              	100.00%
Bootstrap support for Q5KEV1 as seed ortholog is 100%.
Bootstrap support for D3B6G8 as seed ortholog is 100%.

Group of orthologs #505. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:320 P.pallidum:320

Q5KFH8              	100.00%		D3BUX7              	100.00%
Bootstrap support for Q5KFH8 as seed ortholog is 100%.
Bootstrap support for D3BUX7 as seed ortholog is 100%.

Group of orthologs #506. Best score 319 bits
Score difference with first non-orthologous sequence - C.neoformans:319 P.pallidum:319

Q5K8P5              	100.00%		D3BVM9              	100.00%
Bootstrap support for Q5K8P5 as seed ortholog is 100%.
Bootstrap support for D3BVM9 as seed ortholog is 100%.

Group of orthologs #507. Best score 318 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:219

Q5KCN2              	100.00%		D3BQR0              	100.00%
Bootstrap support for Q5KCN2 as seed ortholog is 100%.
Bootstrap support for D3BQR0 as seed ortholog is 100%.

Group of orthologs #508. Best score 318 bits
Score difference with first non-orthologous sequence - C.neoformans:318 P.pallidum:318

Q5KM38              	100.00%		D3BV59              	100.00%
Bootstrap support for Q5KM38 as seed ortholog is 100%.
Bootstrap support for D3BV59 as seed ortholog is 100%.

Group of orthologs #509. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:241 P.pallidum:317

P0CR16              	100.00%		D3BR13              	100.00%
Bootstrap support for P0CR16 as seed ortholog is 100%.
Bootstrap support for D3BR13 as seed ortholog is 100%.

Group of orthologs #510. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:317 P.pallidum:317

Q5K955              	100.00%		D3BQL2              	100.00%
Bootstrap support for Q5K955 as seed ortholog is 100%.
Bootstrap support for D3BQL2 as seed ortholog is 100%.

Group of orthologs #511. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.pallidum:317

Q5KJ42              	100.00%		D3BLP5              	100.00%
Bootstrap support for Q5KJ42 as seed ortholog is 100%.
Bootstrap support for D3BLP5 as seed ortholog is 100%.

Group of orthologs #512. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.pallidum:316

Q5KPE3              	100.00%		D3AVU4              	100.00%
Bootstrap support for Q5KPE3 as seed ortholog is 100%.
Bootstrap support for D3AVU4 as seed ortholog is 100%.

Group of orthologs #513. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:243

Q5K7V7              	100.00%		D3BR68              	100.00%
Bootstrap support for Q5K7V7 as seed ortholog is 100%.
Bootstrap support for D3BR68 as seed ortholog is 100%.

Group of orthologs #514. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.pallidum:316

Q5KNA1              	100.00%		D3BJZ6              	100.00%
Bootstrap support for Q5KNA1 as seed ortholog is 100%.
Bootstrap support for D3BJZ6 as seed ortholog is 100%.

Group of orthologs #515. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:134

Q5K9V2              	100.00%		D3BUX2              	100.00%
Bootstrap support for Q5K9V2 as seed ortholog is 100%.
Bootstrap support for D3BUX2 as seed ortholog is 100%.

Group of orthologs #516. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.pallidum:138

Q5KD50              	100.00%		D3B210              	100.00%
Bootstrap support for Q5KD50 as seed ortholog is 100%.
Bootstrap support for D3B210 as seed ortholog is 99%.

Group of orthologs #517. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.pallidum:314

Q5KQ04              	100.00%		D3AX31              	100.00%
Bootstrap support for Q5KQ04 as seed ortholog is 100%.
Bootstrap support for D3AX31 as seed ortholog is 100%.

Group of orthologs #518. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:314

Q5KNK5              	100.00%		D3BRT1              	100.00%
Bootstrap support for Q5KNK5 as seed ortholog is 99%.
Bootstrap support for D3BRT1 as seed ortholog is 100%.

Group of orthologs #519. Best score 313 bits
Score difference with first non-orthologous sequence - C.neoformans:313 P.pallidum:313

Q5K7X0              	100.00%		D3BJC8              	100.00%
Bootstrap support for Q5K7X0 as seed ortholog is 100%.
Bootstrap support for D3BJC8 as seed ortholog is 100%.

Group of orthologs #520. Best score 313 bits
Score difference with first non-orthologous sequence - C.neoformans:313 P.pallidum:313

Q5KLQ5              	100.00%		D3BK44              	100.00%
Bootstrap support for Q5KLQ5 as seed ortholog is 100%.
Bootstrap support for D3BK44 as seed ortholog is 100%.

Group of orthologs #521. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.pallidum:97

Q5KLT1              	100.00%		D3BJF3              	100.00%
Q5K906              	23.02%		
Q5KDA3              	22.73%		
Bootstrap support for Q5KLT1 as seed ortholog is 100%.
Bootstrap support for D3BJF3 as seed ortholog is 100%.

Group of orthologs #522. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.pallidum:81

P0CM16              	100.00%		D3B3T9              	100.00%
Bootstrap support for P0CM16 as seed ortholog is 99%.
Bootstrap support for D3B3T9 as seed ortholog is 99%.

Group of orthologs #523. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.pallidum:312

P0CN48              	100.00%		D3B418              	100.00%
Bootstrap support for P0CN48 as seed ortholog is 100%.
Bootstrap support for D3B418 as seed ortholog is 100%.

Group of orthologs #524. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.pallidum:312

Q5KQ48              	100.00%		D3AXN0              	100.00%
Bootstrap support for Q5KQ48 as seed ortholog is 100%.
Bootstrap support for D3AXN0 as seed ortholog is 100%.

Group of orthologs #525. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.pallidum:312

Q5KCK7              	100.00%		D3BBN6              	100.00%
Bootstrap support for Q5KCK7 as seed ortholog is 100%.
Bootstrap support for D3BBN6 as seed ortholog is 100%.

Group of orthologs #526. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.pallidum:189

Q5KFQ5              	100.00%		D3BPL1              	100.00%
Bootstrap support for Q5KFQ5 as seed ortholog is 100%.
Bootstrap support for D3BPL1 as seed ortholog is 99%.

Group of orthologs #527. Best score 311 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.pallidum:311

Q5KEG8              	100.00%		D3B508              	100.00%
Bootstrap support for Q5KEG8 as seed ortholog is 100%.
Bootstrap support for D3B508 as seed ortholog is 100%.

Group of orthologs #528. Best score 311 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.pallidum:311

Q5KEY0              	100.00%		D3BEZ3              	100.00%
Bootstrap support for Q5KEY0 as seed ortholog is 100%.
Bootstrap support for D3BEZ3 as seed ortholog is 100%.

Group of orthologs #529. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.pallidum:130

Q5K9B8              	100.00%		D3BM83              	100.00%
Bootstrap support for Q5K9B8 as seed ortholog is 100%.
Bootstrap support for D3BM83 as seed ortholog is 100%.

Group of orthologs #530. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.pallidum:309

Q5K772              	100.00%		D3BQJ7              	100.00%
Bootstrap support for Q5K772 as seed ortholog is 100%.
Bootstrap support for D3BQJ7 as seed ortholog is 100%.

Group of orthologs #531. Best score 308 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.pallidum:207

Q5KG30              	100.00%		D3AWZ0              	100.00%
Bootstrap support for Q5KG30 as seed ortholog is 100%.
Bootstrap support for D3AWZ0 as seed ortholog is 100%.

Group of orthologs #532. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.pallidum:307

Q5KCX9              	100.00%		D3B6K6              	100.00%
Bootstrap support for Q5KCX9 as seed ortholog is 100%.
Bootstrap support for D3B6K6 as seed ortholog is 100%.

Group of orthologs #533. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.pallidum:307

Q5KMA6              	100.00%		D3BLP0              	100.00%
Bootstrap support for Q5KMA6 as seed ortholog is 100%.
Bootstrap support for D3BLP0 as seed ortholog is 100%.

Group of orthologs #534. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.pallidum:236

Q5KI80              	100.00%		D3AYA4              	100.00%
Bootstrap support for Q5KI80 as seed ortholog is 100%.
Bootstrap support for D3AYA4 as seed ortholog is 100%.

Group of orthologs #535. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.pallidum:305

Q5KKC2              	100.00%		D3B0N9              	100.00%
Bootstrap support for Q5KKC2 as seed ortholog is 100%.
Bootstrap support for D3B0N9 as seed ortholog is 100%.

Group of orthologs #536. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:304 P.pallidum:304

Q5KNE6              	100.00%		D3BE81              	100.00%
Q5K809              	46.46%		D3BCT5              	42.89%
Bootstrap support for Q5KNE6 as seed ortholog is 100%.
Bootstrap support for D3BE81 as seed ortholog is 100%.

Group of orthologs #537. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.pallidum:304

Q5KPV3              	100.00%		D3BGN9              	100.00%
                    	       		D3AW08              	36.36%
                    	       		D3B435              	18.92%
Bootstrap support for Q5KPV3 as seed ortholog is 100%.
Bootstrap support for D3BGN9 as seed ortholog is 100%.

Group of orthologs #538. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:304 P.pallidum:304

Q5KJC1              	100.00%		D3BRS8              	100.00%
Bootstrap support for Q5KJC1 as seed ortholog is 100%.
Bootstrap support for D3BRS8 as seed ortholog is 100%.

Group of orthologs #539. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.pallidum:112

Q5KIY3              	100.00%		D3B528              	100.00%
Bootstrap support for Q5KIY3 as seed ortholog is 100%.
Bootstrap support for D3B528 as seed ortholog is 96%.

Group of orthologs #540. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.pallidum:156

Q5KI66              	100.00%		D3B839              	100.00%
Bootstrap support for Q5KI66 as seed ortholog is 99%.
Bootstrap support for D3B839 as seed ortholog is 99%.

Group of orthologs #541. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.pallidum:303

Q5KJU2              	100.00%		D3BER0              	100.00%
Bootstrap support for Q5KJU2 as seed ortholog is 100%.
Bootstrap support for D3BER0 as seed ortholog is 100%.

Group of orthologs #542. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.pallidum:302

Q5KFR0              	100.00%		D3AZM2              	100.00%
Bootstrap support for Q5KFR0 as seed ortholog is 100%.
Bootstrap support for D3AZM2 as seed ortholog is 100%.

Group of orthologs #543. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.pallidum:302

Q5KFJ6              	100.00%		D3B1Q0              	100.00%
Bootstrap support for Q5KFJ6 as seed ortholog is 100%.
Bootstrap support for D3B1Q0 as seed ortholog is 100%.

Group of orthologs #544. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.pallidum:302

Q5KHK1              	100.00%		D3BKM5              	100.00%
Bootstrap support for Q5KHK1 as seed ortholog is 100%.
Bootstrap support for D3BKM5 as seed ortholog is 100%.

Group of orthologs #545. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.pallidum:302

Q5KNE3              	100.00%		D3BI88              	100.00%
Bootstrap support for Q5KNE3 as seed ortholog is 100%.
Bootstrap support for D3BI88 as seed ortholog is 100%.

Group of orthologs #546. Best score 301 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.pallidum:127

P0CN08              	100.00%		D3B9H0              	100.00%
Bootstrap support for P0CN08 as seed ortholog is 99%.
Bootstrap support for D3B9H0 as seed ortholog is 99%.

Group of orthologs #547. Best score 301 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:30

Q5K8I9              	100.00%		D3BP55              	100.00%
Bootstrap support for Q5K8I9 as seed ortholog is 100%.
Bootstrap support for D3BP55 as seed ortholog is 93%.

Group of orthologs #548. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:8 P.pallidum:35

Q5K854              	100.00%		D3BKF3              	100.00%
                    	       		D3BA77              	16.39%
                    	       		D3B7F5              	12.30%
Bootstrap support for Q5K854 as seed ortholog is 63%.
Alternative seed ortholog is Q5KJY2 (8 bits away from this cluster)
Bootstrap support for D3BKF3 as seed ortholog is 96%.

Group of orthologs #549. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.pallidum:60

Q5K6Z2              	100.00%		D3BAT3              	100.00%
Bootstrap support for Q5K6Z2 as seed ortholog is 99%.
Bootstrap support for D3BAT3 as seed ortholog is 97%.

Group of orthologs #550. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.pallidum:300

Q5KJY8              	100.00%		D3B1Q6              	100.00%
Bootstrap support for Q5KJY8 as seed ortholog is 100%.
Bootstrap support for D3B1Q6 as seed ortholog is 100%.

Group of orthologs #551. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:300

Q5K952              	100.00%		D3BL83              	100.00%
Bootstrap support for Q5K952 as seed ortholog is 100%.
Bootstrap support for D3BL83 as seed ortholog is 100%.

Group of orthologs #552. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.pallidum:300

Q5KQ43              	100.00%		D3BBL0              	100.00%
Bootstrap support for Q5KQ43 as seed ortholog is 100%.
Bootstrap support for D3BBL0 as seed ortholog is 100%.

Group of orthologs #553. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.pallidum:300

Q5KQ18              	100.00%		D3BII4              	100.00%
Bootstrap support for Q5KQ18 as seed ortholog is 100%.
Bootstrap support for D3BII4 as seed ortholog is 100%.

Group of orthologs #554. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:298

P0CS50              	100.00%		D3AZ74              	100.00%
Bootstrap support for P0CS50 as seed ortholog is 100%.
Bootstrap support for D3AZ74 as seed ortholog is 100%.

Group of orthologs #555. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:216 P.pallidum:298

Q5KFD9              	100.00%		D3B6G7              	100.00%
Bootstrap support for Q5KFD9 as seed ortholog is 100%.
Bootstrap support for D3B6G7 as seed ortholog is 100%.

Group of orthologs #556. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:298 P.pallidum:298

Q5KD48              	100.00%		D3BEZ2              	100.00%
Bootstrap support for Q5KD48 as seed ortholog is 100%.
Bootstrap support for D3BEZ2 as seed ortholog is 100%.

Group of orthologs #557. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.pallidum:118

Q5K793              	100.00%		D3AZ82              	100.00%
Bootstrap support for Q5K793 as seed ortholog is 100%.
Bootstrap support for D3AZ82 as seed ortholog is 99%.

Group of orthologs #558. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.pallidum:297

Q5KGP1              	100.00%		D3B8S5              	100.00%
Bootstrap support for Q5KGP1 as seed ortholog is 100%.
Bootstrap support for D3B8S5 as seed ortholog is 100%.

Group of orthologs #559. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.pallidum:18

Q5KEJ4              	100.00%		D3BV78              	100.00%
Bootstrap support for Q5KEJ4 as seed ortholog is 100%.
Bootstrap support for D3BV78 as seed ortholog is 63%.
Alternative seed ortholog is D3BKV2 (18 bits away from this cluster)

Group of orthologs #560. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.pallidum:296

Q5K8H1              	100.00%		D3BES1              	100.00%
                    	       		D3BGX1              	74.02%
Bootstrap support for Q5K8H1 as seed ortholog is 100%.
Bootstrap support for D3BES1 as seed ortholog is 100%.

Group of orthologs #561. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.pallidum:296

Q5KC51              	100.00%		D3AZF5              	100.00%
Bootstrap support for Q5KC51 as seed ortholog is 100%.
Bootstrap support for D3AZF5 as seed ortholog is 100%.

Group of orthologs #562. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.pallidum:296

P0CN60              	100.00%		D3BP76              	100.00%
Bootstrap support for P0CN60 as seed ortholog is 100%.
Bootstrap support for D3BP76 as seed ortholog is 100%.

Group of orthologs #563. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.pallidum:295

Q5KIQ7              	100.00%		D3AYA8              	100.00%
Bootstrap support for Q5KIQ7 as seed ortholog is 100%.
Bootstrap support for D3AYA8 as seed ortholog is 100%.

Group of orthologs #564. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.pallidum:187

Q5KQ79              	100.00%		D3AWX8              	100.00%
Bootstrap support for Q5KQ79 as seed ortholog is 100%.
Bootstrap support for D3AWX8 as seed ortholog is 100%.

Group of orthologs #565. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.pallidum:295

Q5K8K4              	100.00%		D3BPG0              	100.00%
Bootstrap support for Q5K8K4 as seed ortholog is 100%.
Bootstrap support for D3BPG0 as seed ortholog is 100%.

Group of orthologs #566. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.pallidum:295

Q5KG75              	100.00%		D3BR30              	100.00%
Bootstrap support for Q5KG75 as seed ortholog is 100%.
Bootstrap support for D3BR30 as seed ortholog is 100%.

Group of orthologs #567. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.pallidum:295

Q5KMA4              	100.00%		D3BTM3              	100.00%
Bootstrap support for Q5KMA4 as seed ortholog is 100%.
Bootstrap support for D3BTM3 as seed ortholog is 100%.

Group of orthologs #568. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.pallidum:200

Q5K7H6              	100.00%		D3BPL3              	100.00%
                    	       		D3BP03              	47.48%
Bootstrap support for Q5K7H6 as seed ortholog is 100%.
Bootstrap support for D3BPL3 as seed ortholog is 99%.

Group of orthologs #569. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.pallidum:294

Q5KE08              	100.00%		D3BNE7              	100.00%
Bootstrap support for Q5KE08 as seed ortholog is 100%.
Bootstrap support for D3BNE7 as seed ortholog is 100%.

Group of orthologs #570. Best score 293 bits
Score difference with first non-orthologous sequence - C.neoformans:293 P.pallidum:293

Q5KHS1              	100.00%		D3BQ29              	100.00%
Bootstrap support for Q5KHS1 as seed ortholog is 100%.
Bootstrap support for D3BQ29 as seed ortholog is 100%.

Group of orthologs #571. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.pallidum:191

Q5KGN7              	100.00%		D3B7P1              	100.00%
Bootstrap support for Q5KGN7 as seed ortholog is 100%.
Bootstrap support for D3B7P1 as seed ortholog is 100%.

Group of orthologs #572. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.pallidum:292

Q5KIV1              	100.00%		D3BM08              	100.00%
Bootstrap support for Q5KIV1 as seed ortholog is 100%.
Bootstrap support for D3BM08 as seed ortholog is 100%.

Group of orthologs #573. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.pallidum:92

Q5KHP3              	100.00%		D3BSW5              	100.00%
Bootstrap support for Q5KHP3 as seed ortholog is 100%.
Bootstrap support for D3BSW5 as seed ortholog is 99%.

Group of orthologs #574. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:291 P.pallidum:291

Q5KC89              	100.00%		D3B206              	100.00%
Bootstrap support for Q5KC89 as seed ortholog is 100%.
Bootstrap support for D3B206 as seed ortholog is 100%.

Group of orthologs #575. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:291 P.pallidum:291

Q5KHK9              	100.00%		D3BMA3              	100.00%
Bootstrap support for Q5KHK9 as seed ortholog is 100%.
Bootstrap support for D3BMA3 as seed ortholog is 100%.

Group of orthologs #576. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:106

Q5KG52              	100.00%		D3BNY2              	100.00%
Bootstrap support for Q5KG52 as seed ortholog is 98%.
Bootstrap support for D3BNY2 as seed ortholog is 99%.

Group of orthologs #577. Best score 290 bits
Score difference with first non-orthologous sequence - C.neoformans:290 P.pallidum:290

Q5KCE8              	100.00%		D3B3W9              	100.00%
Bootstrap support for Q5KCE8 as seed ortholog is 100%.
Bootstrap support for D3B3W9 as seed ortholog is 100%.

Group of orthologs #578. Best score 290 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.pallidum:290

Q5K8F5              	100.00%		D3BV85              	100.00%
Bootstrap support for Q5K8F5 as seed ortholog is 80%.
Bootstrap support for D3BV85 as seed ortholog is 100%.

Group of orthologs #579. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.pallidum:289

P0CM20              	100.00%		D3AXF4              	100.00%
Bootstrap support for P0CM20 as seed ortholog is 100%.
Bootstrap support for D3AXF4 as seed ortholog is 100%.

Group of orthologs #580. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.pallidum:192

Q5KBD0              	100.00%		D3AZ84              	100.00%
Bootstrap support for Q5KBD0 as seed ortholog is 100%.
Bootstrap support for D3AZ84 as seed ortholog is 100%.

Group of orthologs #581. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.pallidum:289

P0CP80              	100.00%		D3B668              	100.00%
Bootstrap support for P0CP80 as seed ortholog is 100%.
Bootstrap support for D3B668 as seed ortholog is 100%.

Group of orthologs #582. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:48

Q5K995              	100.00%		D3BCK5              	100.00%
Bootstrap support for Q5K995 as seed ortholog is 88%.
Bootstrap support for D3BCK5 as seed ortholog is 50%.
Alternative seed ortholog is D3BST6 (48 bits away from this cluster)

Group of orthologs #583. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.pallidum:289

Q5KLJ0              	100.00%		D3B7J9              	100.00%
Bootstrap support for Q5KLJ0 as seed ortholog is 100%.
Bootstrap support for D3B7J9 as seed ortholog is 100%.

Group of orthologs #584. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.pallidum:289

Q5KE09              	100.00%		D3BU59              	100.00%
Bootstrap support for Q5KE09 as seed ortholog is 100%.
Bootstrap support for D3BU59 as seed ortholog is 100%.

Group of orthologs #585. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.pallidum:288

P0CR56              	100.00%		D3AY53              	100.00%
Bootstrap support for P0CR56 as seed ortholog is 100%.
Bootstrap support for D3AY53 as seed ortholog is 100%.

Group of orthologs #586. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.pallidum:288

Q5KPK7              	100.00%		D3B6X7              	100.00%
Bootstrap support for Q5KPK7 as seed ortholog is 100%.
Bootstrap support for D3B6X7 as seed ortholog is 100%.

Group of orthologs #587. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.pallidum:288

Q5K9E9              	100.00%		D3BSA3              	100.00%
Bootstrap support for Q5K9E9 as seed ortholog is 100%.
Bootstrap support for D3BSA3 as seed ortholog is 100%.

Group of orthologs #588. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.pallidum:144

Q5KKF0              	100.00%		D3BS34              	100.00%
Bootstrap support for Q5KKF0 as seed ortholog is 99%.
Bootstrap support for D3BS34 as seed ortholog is 99%.

Group of orthologs #589. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.pallidum:153

Q5KM29              	100.00%		D3BR41              	100.00%
Bootstrap support for Q5KM29 as seed ortholog is 100%.
Bootstrap support for D3BR41 as seed ortholog is 99%.

Group of orthologs #590. Best score 287 bits
Score difference with first non-orthologous sequence - C.neoformans:287 P.pallidum:287

Q5K7J7              	100.00%		D3B0B4              	100.00%
Bootstrap support for Q5K7J7 as seed ortholog is 100%.
Bootstrap support for D3B0B4 as seed ortholog is 100%.

Group of orthologs #591. Best score 287 bits
Score difference with first non-orthologous sequence - C.neoformans:287 P.pallidum:287

Q5KBN7              	100.00%		D3B8D7              	100.00%
Bootstrap support for Q5KBN7 as seed ortholog is 100%.
Bootstrap support for D3B8D7 as seed ortholog is 100%.

Group of orthologs #592. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.pallidum:286

Q5KEA3              	100.00%		D3B3U0              	100.00%
Bootstrap support for Q5KEA3 as seed ortholog is 100%.
Bootstrap support for D3B3U0 as seed ortholog is 100%.

Group of orthologs #593. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.pallidum:286

Q5KK71              	100.00%		D3AZP5              	100.00%
Bootstrap support for Q5KK71 as seed ortholog is 100%.
Bootstrap support for D3AZP5 as seed ortholog is 100%.

Group of orthologs #594. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.pallidum:197

Q5K9N8              	100.00%		D3BNN4              	100.00%
Bootstrap support for Q5K9N8 as seed ortholog is 100%.
Bootstrap support for D3BNN4 as seed ortholog is 100%.

Group of orthologs #595. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.pallidum:286

Q5KNK2              	100.00%		D3BCZ8              	100.00%
Bootstrap support for Q5KNK2 as seed ortholog is 100%.
Bootstrap support for D3BCZ8 as seed ortholog is 100%.

Group of orthologs #596. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.pallidum:103

P0CR04              	100.00%		D3B2W2              	100.00%
Bootstrap support for P0CR04 as seed ortholog is 96%.
Bootstrap support for D3B2W2 as seed ortholog is 99%.

Group of orthologs #597. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.pallidum:144

Q5KMV5              	100.00%		D3BAQ8              	100.00%
Bootstrap support for Q5KMV5 as seed ortholog is 100%.
Bootstrap support for D3BAQ8 as seed ortholog is 100%.

Group of orthologs #598. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.pallidum:284

Q5KCV4              	100.00%		D3BDG4              	100.00%
Q5KDZ8              	20.36%		
Bootstrap support for Q5KCV4 as seed ortholog is 100%.
Bootstrap support for D3BDG4 as seed ortholog is 100%.

Group of orthologs #599. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.pallidum:284

Q5KDX8              	100.00%		D3BTS5              	100.00%
Q5KCA3              	8.64%		
Bootstrap support for Q5KDX8 as seed ortholog is 100%.
Bootstrap support for D3BTS5 as seed ortholog is 100%.

Group of orthologs #600. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.pallidum:284

Q5K8X8              	100.00%		D3B6D7              	100.00%
Bootstrap support for Q5K8X8 as seed ortholog is 100%.
Bootstrap support for D3B6D7 as seed ortholog is 100%.

Group of orthologs #601. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:128

Q5K705              	100.00%		D3BND6              	100.00%
Bootstrap support for Q5K705 as seed ortholog is 99%.
Bootstrap support for D3BND6 as seed ortholog is 99%.

Group of orthologs #602. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.pallidum:284

Q5K7I8              	100.00%		D3BRL6              	100.00%
Bootstrap support for Q5K7I8 as seed ortholog is 100%.
Bootstrap support for D3BRL6 as seed ortholog is 100%.

Group of orthologs #603. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:234 P.pallidum:195

Q5KQ33              	100.00%		D3BCQ2              	100.00%
Bootstrap support for Q5KQ33 as seed ortholog is 100%.
Bootstrap support for D3BCQ2 as seed ortholog is 100%.

Group of orthologs #604. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.pallidum:284

Q5K9R5              	100.00%		D3BU50              	100.00%
Bootstrap support for Q5K9R5 as seed ortholog is 100%.
Bootstrap support for D3BU50 as seed ortholog is 100%.

Group of orthologs #605. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.pallidum:282

Q5KA36              	100.00%		D3BT29              	100.00%
Bootstrap support for Q5KA36 as seed ortholog is 100%.
Bootstrap support for D3BT29 as seed ortholog is 100%.

Group of orthologs #606. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:55

Q5KK41              	100.00%		D3BL86              	100.00%
Bootstrap support for Q5KK41 as seed ortholog is 99%.
Bootstrap support for D3BL86 as seed ortholog is 97%.

Group of orthologs #607. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.pallidum:282

Q5KI89              	100.00%		D3BQU0              	100.00%
Bootstrap support for Q5KI89 as seed ortholog is 100%.
Bootstrap support for D3BQU0 as seed ortholog is 100%.

Group of orthologs #608. Best score 281 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:210

Q5KHR9              	100.00%		D3B0J9              	100.00%
Bootstrap support for Q5KHR9 as seed ortholog is 100%.
Bootstrap support for D3B0J9 as seed ortholog is 99%.

Group of orthologs #609. Best score 281 bits
Score difference with first non-orthologous sequence - C.neoformans:281 P.pallidum:281

Q5KM39              	100.00%		D3B7Y5              	100.00%
Bootstrap support for Q5KM39 as seed ortholog is 100%.
Bootstrap support for D3B7Y5 as seed ortholog is 100%.

Group of orthologs #610. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.pallidum:52

Q5K9D4              	100.00%		D3BF32              	100.00%
Q5K9D8              	46.42%		D3BS76              	14.70%
                    	       		D3BS79              	13.91%
Bootstrap support for Q5K9D4 as seed ortholog is 100%.
Bootstrap support for D3BF32 as seed ortholog is 88%.

Group of orthologs #611. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.pallidum:280

Q5KK57              	100.00%		D3AY55              	100.00%
Q5KN19              	11.76%		
Bootstrap support for Q5KK57 as seed ortholog is 100%.
Bootstrap support for D3AY55 as seed ortholog is 100%.

Group of orthologs #612. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.pallidum:280

Q5KPK4              	100.00%		D3B4H2              	100.00%
Bootstrap support for Q5KPK4 as seed ortholog is 100%.
Bootstrap support for D3B4H2 as seed ortholog is 100%.

Group of orthologs #613. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.pallidum:280

Q5KCG6              	100.00%		D3BRV0              	100.00%
Bootstrap support for Q5KCG6 as seed ortholog is 100%.
Bootstrap support for D3BRV0 as seed ortholog is 100%.

Group of orthologs #614. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.pallidum:279

P0CP58              	100.00%		D3BB01              	100.00%
Bootstrap support for P0CP58 as seed ortholog is 100%.
Bootstrap support for D3BB01 as seed ortholog is 100%.

Group of orthologs #615. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.pallidum:279

Q5KJB0              	100.00%		D3B1S6              	100.00%
Bootstrap support for Q5KJB0 as seed ortholog is 100%.
Bootstrap support for D3B1S6 as seed ortholog is 100%.

Group of orthologs #616. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.pallidum:279

Q5KFB7              	100.00%		D3BEQ0              	100.00%
Bootstrap support for Q5KFB7 as seed ortholog is 100%.
Bootstrap support for D3BEQ0 as seed ortholog is 100%.

Group of orthologs #617. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:186

Q5K840              	100.00%		D3BSL6              	100.00%
Q5K833              	76.01%		
Bootstrap support for Q5K840 as seed ortholog is 99%.
Bootstrap support for D3BSL6 as seed ortholog is 100%.

Group of orthologs #618. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.pallidum:278

Q5KFG2              	100.00%		D3BSE8              	100.00%
Bootstrap support for Q5KFG2 as seed ortholog is 100%.
Bootstrap support for D3BSE8 as seed ortholog is 100%.

Group of orthologs #619. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.pallidum:221

Q5KJ58              	100.00%		D3AZG7              	100.00%
Bootstrap support for Q5KJ58 as seed ortholog is 100%.
Bootstrap support for D3AZG7 as seed ortholog is 100%.

Group of orthologs #620. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.pallidum:167

Q5KKX6              	100.00%		D3AXX6              	100.00%
Bootstrap support for Q5KKX6 as seed ortholog is 99%.
Bootstrap support for D3AXX6 as seed ortholog is 99%.

Group of orthologs #621. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.pallidum:277

Q5KMP0              	100.00%		D3AY66              	100.00%
Bootstrap support for Q5KMP0 as seed ortholog is 100%.
Bootstrap support for D3AY66 as seed ortholog is 100%.

Group of orthologs #622. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.pallidum:277

P0CO32              	100.00%		D3BDL8              	100.00%
Bootstrap support for P0CO32 as seed ortholog is 100%.
Bootstrap support for D3BDL8 as seed ortholog is 100%.

Group of orthologs #623. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.pallidum:277

Q5KIR0              	100.00%		D3BRV9              	100.00%
Bootstrap support for Q5KIR0 as seed ortholog is 87%.
Bootstrap support for D3BRV9 as seed ortholog is 100%.

Group of orthologs #624. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.pallidum:277

Q5KNF4              	100.00%		D3BNL4              	100.00%
Bootstrap support for Q5KNF4 as seed ortholog is 100%.
Bootstrap support for D3BNL4 as seed ortholog is 100%.

Group of orthologs #625. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.pallidum:276

Q5KCK3              	100.00%		D3BAJ3              	100.00%
Bootstrap support for Q5KCK3 as seed ortholog is 100%.
Bootstrap support for D3BAJ3 as seed ortholog is 100%.

Group of orthologs #626. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.pallidum:276

Q5KGA8              	100.00%		D3BCZ2              	100.00%
Bootstrap support for Q5KGA8 as seed ortholog is 100%.
Bootstrap support for D3BCZ2 as seed ortholog is 100%.

Group of orthologs #627. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.pallidum:95

Q5KF37              	100.00%		D3BJU2              	100.00%
Bootstrap support for Q5KF37 as seed ortholog is 100%.
Bootstrap support for D3BJU2 as seed ortholog is 98%.

Group of orthologs #628. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.pallidum:275

Q5K9W9              	100.00%		D3BKF4              	100.00%
Bootstrap support for Q5K9W9 as seed ortholog is 100%.
Bootstrap support for D3BKF4 as seed ortholog is 100%.

Group of orthologs #629. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.pallidum:275

Q5K737              	100.00%		D3BQI1              	100.00%
Bootstrap support for Q5K737 as seed ortholog is 100%.
Bootstrap support for D3BQI1 as seed ortholog is 100%.

Group of orthologs #630. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.pallidum:275

Q5KLV9              	100.00%		D3BLH6              	100.00%
Bootstrap support for Q5KLV9 as seed ortholog is 100%.
Bootstrap support for D3BLH6 as seed ortholog is 100%.

Group of orthologs #631. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:176

Q5K7W2              	100.00%		D3B2T1              	100.00%
Q5K7W1              	79.37%		
Bootstrap support for Q5K7W2 as seed ortholog is 99%.
Bootstrap support for D3B2T1 as seed ortholog is 100%.

Group of orthologs #632. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.pallidum:274

Q5KEJ6              	100.00%		D3AX76              	100.00%
Bootstrap support for Q5KEJ6 as seed ortholog is 100%.
Bootstrap support for D3AX76 as seed ortholog is 100%.

Group of orthologs #633. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.pallidum:274

Q5KK40              	100.00%		D3B0J0              	100.00%
Bootstrap support for Q5KK40 as seed ortholog is 100%.
Bootstrap support for D3B0J0 as seed ortholog is 100%.

Group of orthologs #634. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.pallidum:191

Q5KAU6              	100.00%		D3BEA5              	100.00%
Bootstrap support for Q5KAU6 as seed ortholog is 100%.
Bootstrap support for D3BEA5 as seed ortholog is 100%.

Group of orthologs #635. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.pallidum:274

Q5KCX4              	100.00%		D3BLT0              	100.00%
Bootstrap support for Q5KCX4 as seed ortholog is 100%.
Bootstrap support for D3BLT0 as seed ortholog is 100%.

Group of orthologs #636. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.pallidum:273

P0CP90              	100.00%		D3B4Z7              	100.00%
Bootstrap support for P0CP90 as seed ortholog is 100%.
Bootstrap support for D3B4Z7 as seed ortholog is 100%.

Group of orthologs #637. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.pallidum:273

Q5KFM4              	100.00%		D3BAW0              	100.00%
Bootstrap support for Q5KFM4 as seed ortholog is 100%.
Bootstrap support for D3BAW0 as seed ortholog is 100%.

Group of orthologs #638. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.pallidum:273

Q5KC64              	100.00%		D3BSN3              	100.00%
Bootstrap support for Q5KC64 as seed ortholog is 100%.
Bootstrap support for D3BSN3 as seed ortholog is 100%.

Group of orthologs #639. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.pallidum:167

Q5KN58              	100.00%		D3BHU1              	100.00%
Bootstrap support for Q5KN58 as seed ortholog is 100%.
Bootstrap support for D3BHU1 as seed ortholog is 99%.

Group of orthologs #640. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.pallidum:272

Q5KBQ7              	100.00%		D3BB15              	100.00%
                    	       		D3BIM9              	26.45%
Bootstrap support for Q5KBQ7 as seed ortholog is 100%.
Bootstrap support for D3BB15 as seed ortholog is 100%.

Group of orthologs #641. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.pallidum:272

Q5KD80              	100.00%		D3B2Q1              	100.00%
Bootstrap support for Q5KD80 as seed ortholog is 100%.
Bootstrap support for D3B2Q1 as seed ortholog is 100%.

Group of orthologs #642. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:272

Q5KL06              	100.00%		D3B2F1              	100.00%
Bootstrap support for Q5KL06 as seed ortholog is 96%.
Bootstrap support for D3B2F1 as seed ortholog is 100%.

Group of orthologs #643. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.pallidum:16

Q5KP65              	100.00%		D3BUJ1              	100.00%
Bootstrap support for Q5KP65 as seed ortholog is 99%.
Bootstrap support for D3BUJ1 as seed ortholog is 68%.
Alternative seed ortholog is D3BDH0 (16 bits away from this cluster)

Group of orthologs #644. Best score 271 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.pallidum:271

Q5KIM1              	100.00%		D3AYA9              	100.00%
Bootstrap support for Q5KIM1 as seed ortholog is 100%.
Bootstrap support for D3AYA9 as seed ortholog is 100%.

Group of orthologs #645. Best score 271 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.pallidum:132

Q5KD00              	100.00%		D3BKC7              	100.00%
Bootstrap support for Q5KD00 as seed ortholog is 100%.
Bootstrap support for D3BKC7 as seed ortholog is 99%.

Group of orthologs #646. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.pallidum:270

P0CN94              	100.00%		D3BV94              	100.00%
                    	       		D3BVB3              	42.43%
                    	       		D3BVB6              	34.54%
Bootstrap support for P0CN94 as seed ortholog is 100%.
Bootstrap support for D3BV94 as seed ortholog is 100%.

Group of orthologs #647. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.pallidum:154

Q5KKF5              	100.00%		D3B3Z5              	100.00%
Bootstrap support for Q5KKF5 as seed ortholog is 99%.
Bootstrap support for D3B3Z5 as seed ortholog is 99%.

Group of orthologs #648. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.pallidum:140

Q5K7Y4              	100.00%		D3BTY6              	100.00%
Bootstrap support for Q5K7Y4 as seed ortholog is 100%.
Bootstrap support for D3BTY6 as seed ortholog is 99%.

Group of orthologs #649. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.pallidum:270

Q5K7Y1              	100.00%		D3BU70              	100.00%
Bootstrap support for Q5K7Y1 as seed ortholog is 100%.
Bootstrap support for D3BU70 as seed ortholog is 100%.

Group of orthologs #650. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.pallidum:270

Q5KKU8              	100.00%		D3BQE1              	100.00%
Bootstrap support for Q5KKU8 as seed ortholog is 100%.
Bootstrap support for D3BQE1 as seed ortholog is 100%.

Group of orthologs #651. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:269

P0CO42              	100.00%		D3AY59              	100.00%
Bootstrap support for P0CO42 as seed ortholog is 100%.
Bootstrap support for D3AY59 as seed ortholog is 100%.

Group of orthologs #652. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:269

Q5KQ20              	100.00%		D3AVI8              	100.00%
Bootstrap support for Q5KQ20 as seed ortholog is 100%.
Bootstrap support for D3AVI8 as seed ortholog is 100%.

Group of orthologs #653. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:269

P0CO52              	100.00%		D3BEF3              	100.00%
Bootstrap support for P0CO52 as seed ortholog is 100%.
Bootstrap support for D3BEF3 as seed ortholog is 100%.

Group of orthologs #654. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:49

Q5KMR8              	100.00%		D3B2B1              	100.00%
Bootstrap support for Q5KMR8 as seed ortholog is 100%.
Bootstrap support for D3B2B1 as seed ortholog is 86%.

Group of orthologs #655. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:99

P0CP12              	100.00%		D3BL25              	100.00%
Bootstrap support for P0CP12 as seed ortholog is 100%.
Bootstrap support for D3BL25 as seed ortholog is 95%.

Group of orthologs #656. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:77

Q5KPZ0              	100.00%		D3B851              	100.00%
Bootstrap support for Q5KPZ0 as seed ortholog is 100%.
Bootstrap support for D3B851 as seed ortholog is 94%.

Group of orthologs #657. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:269

P0CP14              	100.00%		D3BR16              	100.00%
Bootstrap support for P0CP14 as seed ortholog is 99%.
Bootstrap support for D3BR16 as seed ortholog is 100%.

Group of orthologs #658. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.pallidum:269

Q5KH26              	100.00%		D3BKP9              	100.00%
Bootstrap support for Q5KH26 as seed ortholog is 100%.
Bootstrap support for D3BKP9 as seed ortholog is 100%.

Group of orthologs #659. Best score 268 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.pallidum:268

Q5K6Y9              	100.00%		D3BFM3              	100.00%
Bootstrap support for Q5K6Y9 as seed ortholog is 99%.
Bootstrap support for D3BFM3 as seed ortholog is 100%.

Group of orthologs #660. Best score 268 bits
Score difference with first non-orthologous sequence - C.neoformans:268 P.pallidum:268

Q5KNI6              	100.00%		D3BVG5              	100.00%
Bootstrap support for Q5KNI6 as seed ortholog is 100%.
Bootstrap support for D3BVG5 as seed ortholog is 100%.

Group of orthologs #661. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.pallidum:267

Q5KBR5              	100.00%		D3AXK7              	100.00%
Bootstrap support for Q5KBR5 as seed ortholog is 100%.
Bootstrap support for D3AXK7 as seed ortholog is 100%.

Group of orthologs #662. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.pallidum:132

Q5KFC1              	100.00%		D3B110              	100.00%
Bootstrap support for Q5KFC1 as seed ortholog is 100%.
Bootstrap support for D3B110 as seed ortholog is 99%.

Group of orthologs #663. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.pallidum:42

Q5KHF9              	100.00%		D3B3C1              	100.00%
Bootstrap support for Q5KHF9 as seed ortholog is 100%.
Bootstrap support for D3B3C1 as seed ortholog is 91%.

Group of orthologs #664. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.pallidum:267

Q5KJZ6              	100.00%		D3B567              	100.00%
Bootstrap support for Q5KJZ6 as seed ortholog is 100%.
Bootstrap support for D3B567 as seed ortholog is 100%.

Group of orthologs #665. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.pallidum:267

Q5KLS0              	100.00%		D3B770              	100.00%
Bootstrap support for Q5KLS0 as seed ortholog is 100%.
Bootstrap support for D3B770 as seed ortholog is 100%.

Group of orthologs #666. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:98

Q5KGD8              	100.00%		D3BFF7              	100.00%
Bootstrap support for Q5KGD8 as seed ortholog is 99%.
Bootstrap support for D3BFF7 as seed ortholog is 99%.

Group of orthologs #667. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.pallidum:267

Q5KK78              	100.00%		D3BIB6              	100.00%
Bootstrap support for Q5KK78 as seed ortholog is 100%.
Bootstrap support for D3BIB6 as seed ortholog is 100%.

Group of orthologs #668. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:267

Q9HFU4              	100.00%		D3BRI8              	100.00%
Bootstrap support for Q9HFU4 as seed ortholog is 99%.
Bootstrap support for D3BRI8 as seed ortholog is 100%.

Group of orthologs #669. Best score 266 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.pallidum:266

P0CO88              	100.00%		D3B280              	100.00%
Bootstrap support for P0CO88 as seed ortholog is 81%.
Bootstrap support for D3B280 as seed ortholog is 100%.

Group of orthologs #670. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:142

P0CR08              	100.00%		D3B5M6              	100.00%
Bootstrap support for P0CR08 as seed ortholog is 98%.
Bootstrap support for D3B5M6 as seed ortholog is 99%.

Group of orthologs #671. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:265 P.pallidum:189

Q5KDE0              	100.00%		D3BL62              	100.00%
Bootstrap support for Q5KDE0 as seed ortholog is 100%.
Bootstrap support for D3BL62 as seed ortholog is 100%.

Group of orthologs #672. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.pallidum:264

Q5K898              	100.00%		D3AZU3              	100.00%
Bootstrap support for Q5K898 as seed ortholog is 100%.
Bootstrap support for D3AZU3 as seed ortholog is 100%.

Group of orthologs #673. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.pallidum:264

Q5K9Y2              	100.00%		D3B5T9              	100.00%
Bootstrap support for Q5K9Y2 as seed ortholog is 100%.
Bootstrap support for D3B5T9 as seed ortholog is 100%.

Group of orthologs #674. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.pallidum:264

Q5K9K4              	100.00%		D3B6E5              	100.00%
Bootstrap support for Q5K9K4 as seed ortholog is 100%.
Bootstrap support for D3B6E5 as seed ortholog is 100%.

Group of orthologs #675. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.pallidum:264

Q5KKZ9              	100.00%		D3AWJ9              	100.00%
Bootstrap support for Q5KKZ9 as seed ortholog is 100%.
Bootstrap support for D3AWJ9 as seed ortholog is 100%.

Group of orthologs #676. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.pallidum:264

Q5KJ16              	100.00%		D3B5U9              	100.00%
Bootstrap support for Q5KJ16 as seed ortholog is 100%.
Bootstrap support for D3B5U9 as seed ortholog is 100%.

Group of orthologs #677. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.pallidum:264

Q5KEY9              	100.00%		D3BGE3              	100.00%
Bootstrap support for Q5KEY9 as seed ortholog is 100%.
Bootstrap support for D3BGE3 as seed ortholog is 100%.

Group of orthologs #678. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.pallidum:76

Q5KGI9              	100.00%		D3BM81              	100.00%
Bootstrap support for Q5KGI9 as seed ortholog is 79%.
Bootstrap support for D3BM81 as seed ortholog is 95%.

Group of orthologs #679. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.pallidum:263

Q5KDC2              	100.00%		D3B9R2              	100.00%
Bootstrap support for Q5KDC2 as seed ortholog is 100%.
Bootstrap support for D3B9R2 as seed ortholog is 100%.

Group of orthologs #680. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.pallidum:263

Q5KG79              	100.00%		D3B8S4              	100.00%
Bootstrap support for Q5KG79 as seed ortholog is 72%.
Alternative seed ortholog is Q5KDN4 (21 bits away from this cluster)
Bootstrap support for D3B8S4 as seed ortholog is 100%.

Group of orthologs #681. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.pallidum:263

Q5KK51              	100.00%		D3BGD2              	100.00%
Bootstrap support for Q5KK51 as seed ortholog is 100%.
Bootstrap support for D3BGD2 as seed ortholog is 100%.

Group of orthologs #682. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.pallidum:263

Q5KGI2              	100.00%		D3BQQ3              	100.00%
Bootstrap support for Q5KGI2 as seed ortholog is 100%.
Bootstrap support for D3BQQ3 as seed ortholog is 100%.

Group of orthologs #683. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.pallidum:262

Q5KCD9              	100.00%		D3AY60              	100.00%
Bootstrap support for Q5KCD9 as seed ortholog is 100%.
Bootstrap support for D3AY60 as seed ortholog is 100%.

Group of orthologs #684. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.pallidum:262

Q5K8A1              	100.00%		D3B367              	100.00%
Bootstrap support for Q5K8A1 as seed ortholog is 100%.
Bootstrap support for D3B367 as seed ortholog is 100%.

Group of orthologs #685. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.pallidum:262

Q5KA10              	100.00%		D3B3X7              	100.00%
Bootstrap support for Q5KA10 as seed ortholog is 100%.
Bootstrap support for D3B3X7 as seed ortholog is 100%.

Group of orthologs #686. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:161

Q5KKM2              	100.00%		D3BBA4              	100.00%
Bootstrap support for Q5KKM2 as seed ortholog is 99%.
Bootstrap support for D3BBA4 as seed ortholog is 99%.

Group of orthologs #687. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.pallidum:262

Q5KPC1              	100.00%		D3B8H0              	100.00%
Bootstrap support for Q5KPC1 as seed ortholog is 100%.
Bootstrap support for D3B8H0 as seed ortholog is 100%.

Group of orthologs #688. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.pallidum:262

Q5KKR7              	100.00%		D3BMZ6              	100.00%
Bootstrap support for Q5KKR7 as seed ortholog is 100%.
Bootstrap support for D3BMZ6 as seed ortholog is 100%.

Group of orthologs #689. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.pallidum:261

Q5KQ65              	100.00%		D3BF70              	100.00%
Bootstrap support for Q5KQ65 as seed ortholog is 100%.
Bootstrap support for D3BF70 as seed ortholog is 100%.

Group of orthologs #690. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.pallidum:260

Q5KDI6              	100.00%		D3AZV9              	100.00%
Bootstrap support for Q5KDI6 as seed ortholog is 100%.
Bootstrap support for D3AZV9 as seed ortholog is 100%.

Group of orthologs #691. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.pallidum:260

Q5KJH8              	100.00%		D3B171              	100.00%
Bootstrap support for Q5KJH8 as seed ortholog is 100%.
Bootstrap support for D3B171 as seed ortholog is 100%.

Group of orthologs #692. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.pallidum:260

Q5KD79              	100.00%		D3BIM4              	100.00%
Bootstrap support for Q5KD79 as seed ortholog is 100%.
Bootstrap support for D3BIM4 as seed ortholog is 100%.

Group of orthologs #693. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.pallidum:259

P0CR74              	100.00%		D3AXH6              	100.00%
Bootstrap support for P0CR74 as seed ortholog is 100%.
Bootstrap support for D3AXH6 as seed ortholog is 100%.

Group of orthologs #694. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:84

P0CS76              	100.00%		D3AYN1              	100.00%
Bootstrap support for P0CS76 as seed ortholog is 94%.
Bootstrap support for D3AYN1 as seed ortholog is 98%.

Group of orthologs #695. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:61

P0CS28              	100.00%		D3BI43              	100.00%
Bootstrap support for P0CS28 as seed ortholog is 99%.
Bootstrap support for D3BI43 as seed ortholog is 90%.

Group of orthologs #696. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.pallidum:258

Q5KGP7              	100.00%		D3BQU8              	100.00%
Bootstrap support for Q5KGP7 as seed ortholog is 100%.
Bootstrap support for D3BQU8 as seed ortholog is 100%.

Group of orthologs #697. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.pallidum:59

Q5KC79              	100.00%		D3BG32              	100.00%
Q5KGQ4              	47.70%		
Q5KKB7              	47.37%		
Q5KD28              	46.28%		
Q5K8W0              	43.98%		
Q5K6S8              	10.39%		
Q5KMZ2              	9.19%		
Q5KCC5              	8.86%		
Q5KA16              	6.46%		
Bootstrap support for Q5KC79 as seed ortholog is 73%.
Alternative seed ortholog is Q5KKF1 (28 bits away from this cluster)
Bootstrap support for D3BG32 as seed ortholog is 90%.

Group of orthologs #698. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:257 P.pallidum:257

Q5KIJ3              	100.00%		D3AWL4              	100.00%
Bootstrap support for Q5KIJ3 as seed ortholog is 100%.
Bootstrap support for D3AWL4 as seed ortholog is 100%.

Group of orthologs #699. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.pallidum:257

Q5KGW5              	100.00%		D3B1H2              	100.00%
Bootstrap support for Q5KGW5 as seed ortholog is 100%.
Bootstrap support for D3B1H2 as seed ortholog is 100%.

Group of orthologs #700. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:257 P.pallidum:257

Q5KLE9              	100.00%		D3B0C3              	100.00%
Bootstrap support for Q5KLE9 as seed ortholog is 100%.
Bootstrap support for D3B0C3 as seed ortholog is 100%.

Group of orthologs #701. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.pallidum:257

P0CM46              	100.00%		D3BLX9              	100.00%
Bootstrap support for P0CM46 as seed ortholog is 60%.
Alternative seed ortholog is P0CM44 (17 bits away from this cluster)
Bootstrap support for D3BLX9 as seed ortholog is 100%.

Group of orthologs #702. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:256

Q5KGI6              	100.00%		D3BMX7              	100.00%
Q5K993              	18.96%		
Q5KPY6              	13.73%		
Q5K924              	11.54%		
Bootstrap support for Q5KGI6 as seed ortholog is 100%.
Bootstrap support for D3BMX7 as seed ortholog is 100%.

Group of orthologs #703. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.pallidum:256

Q5KG36              	100.00%		D3B782              	100.00%
                    	       		D3AX99              	53.39%
Bootstrap support for Q5KG36 as seed ortholog is 100%.
Bootstrap support for D3B782 as seed ortholog is 100%.

Group of orthologs #704. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.pallidum:91

Q5KF72              	100.00%		D3BGI7              	100.00%
Bootstrap support for Q5KF72 as seed ortholog is 99%.
Bootstrap support for D3BGI7 as seed ortholog is 99%.

Group of orthologs #705. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.pallidum:255

Q5KGD3              	100.00%		D3B571              	100.00%
                    	       		D3BV09              	10.79%
Bootstrap support for Q5KGD3 as seed ortholog is 100%.
Bootstrap support for D3B571 as seed ortholog is 100%.

Group of orthologs #706. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.pallidum:255

Q5K8D6              	100.00%		D3BQQ9              	100.00%
Bootstrap support for Q5K8D6 as seed ortholog is 100%.
Bootstrap support for D3BQQ9 as seed ortholog is 100%.

Group of orthologs #707. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:169

Q5KAF9              	100.00%		D3BP85              	100.00%
Bootstrap support for Q5KAF9 as seed ortholog is 99%.
Bootstrap support for D3BP85 as seed ortholog is 99%.

Group of orthologs #708. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.pallidum:255

Q5KFT4              	100.00%		D3BR69              	100.00%
Bootstrap support for Q5KFT4 as seed ortholog is 100%.
Bootstrap support for D3BR69 as seed ortholog is 100%.

Group of orthologs #709. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.pallidum:254

Q5KFZ1              	100.00%		D3BDR3              	100.00%
                    	       		D3BME1              	13.70%
Bootstrap support for Q5KFZ1 as seed ortholog is 100%.
Bootstrap support for D3BDR3 as seed ortholog is 100%.

Group of orthologs #710. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.pallidum:254

Q5KEZ6              	100.00%		D3B2J9              	100.00%
Bootstrap support for Q5KEZ6 as seed ortholog is 100%.
Bootstrap support for D3B2J9 as seed ortholog is 100%.

Group of orthologs #711. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.pallidum:254

Q5KFC5              	100.00%		D3BHV4              	100.00%
Bootstrap support for Q5KFC5 as seed ortholog is 100%.
Bootstrap support for D3BHV4 as seed ortholog is 100%.

Group of orthologs #712. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.pallidum:174

Q5K756              	100.00%		D3BVF8              	100.00%
Bootstrap support for Q5K756 as seed ortholog is 100%.
Bootstrap support for D3BVF8 as seed ortholog is 99%.

Group of orthologs #713. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.pallidum:253

Q5KBE8              	100.00%		D3B3V0              	100.00%
Q5KPG2              	56.49%		D3BJJ8              	7.63%
Q5KLQ1              	11.17%		D3B307              	6.71%
Q5KE59              	7.23%		
Bootstrap support for Q5KBE8 as seed ortholog is 100%.
Bootstrap support for D3B3V0 as seed ortholog is 100%.

Group of orthologs #714. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.pallidum:253

Q5KAT4              	100.00%		D3BPJ2              	100.00%
Q5KAV3              	60.68%		
Bootstrap support for Q5KAT4 as seed ortholog is 100%.
Bootstrap support for D3BPJ2 as seed ortholog is 100%.

Group of orthologs #715. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.pallidum:253

Q5KHA6              	100.00%		D3AZH8              	100.00%
Bootstrap support for Q5KHA6 as seed ortholog is 100%.
Bootstrap support for D3AZH8 as seed ortholog is 100%.

Group of orthologs #716. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.pallidum:253

Q5K851              	100.00%		D3BPM7              	100.00%
Bootstrap support for Q5K851 as seed ortholog is 100%.
Bootstrap support for D3BPM7 as seed ortholog is 100%.

Group of orthologs #717. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.pallidum:177

Q5KJ01              	100.00%		D3BLV1              	100.00%
Bootstrap support for Q5KJ01 as seed ortholog is 100%.
Bootstrap support for D3BLV1 as seed ortholog is 99%.

Group of orthologs #718. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.pallidum:252

Q5KIG6              	100.00%		D3B3A4              	100.00%
Bootstrap support for Q5KIG6 as seed ortholog is 100%.
Bootstrap support for D3B3A4 as seed ortholog is 100%.

Group of orthologs #719. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.pallidum:196

Q5KKN8              	100.00%		D3B725              	100.00%
Bootstrap support for Q5KKN8 as seed ortholog is 99%.
Bootstrap support for D3B725 as seed ortholog is 99%.

Group of orthologs #720. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.pallidum:251

Q5KB45              	100.00%		D3BRX3              	100.00%
                    	       		D3B002              	7.39%
Bootstrap support for Q5KB45 as seed ortholog is 100%.
Bootstrap support for D3BRX3 as seed ortholog is 100%.

Group of orthologs #721. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.pallidum:251

Q5KIT6              	100.00%		D3AX75              	100.00%
Bootstrap support for Q5KIT6 as seed ortholog is 99%.
Bootstrap support for D3AX75 as seed ortholog is 100%.

Group of orthologs #722. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.pallidum:251

Q5K9U9              	100.00%		D3BBM4              	100.00%
Bootstrap support for Q5K9U9 as seed ortholog is 100%.
Bootstrap support for D3BBM4 as seed ortholog is 100%.

Group of orthologs #723. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.pallidum:251

Q5KB01              	100.00%		D3BD59              	100.00%
Bootstrap support for Q5KB01 as seed ortholog is 100%.
Bootstrap support for D3BD59 as seed ortholog is 100%.

Group of orthologs #724. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.pallidum:251

Q5KJK3              	100.00%		D3BD64              	100.00%
Bootstrap support for Q5KJK3 as seed ortholog is 99%.
Bootstrap support for D3BD64 as seed ortholog is 100%.

Group of orthologs #725. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.pallidum:127

Q5KEY2              	100.00%		D3BM48              	100.00%
Bootstrap support for Q5KEY2 as seed ortholog is 100%.
Bootstrap support for D3BM48 as seed ortholog is 99%.

Group of orthologs #726. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.pallidum:251

Q5KLE7              	100.00%		D3BHC9              	100.00%
Bootstrap support for Q5KLE7 as seed ortholog is 100%.
Bootstrap support for D3BHC9 as seed ortholog is 100%.

Group of orthologs #727. Best score 250 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.pallidum:250

Q5KH27              	100.00%		D3BH77              	100.00%
Bootstrap support for Q5KH27 as seed ortholog is 100%.
Bootstrap support for D3BH77 as seed ortholog is 100%.

Group of orthologs #728. Best score 250 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:64

Q5KKS0              	100.00%		D3BEC0              	100.00%
Bootstrap support for Q5KKS0 as seed ortholog is 99%.
Bootstrap support for D3BEC0 as seed ortholog is 95%.

Group of orthologs #729. Best score 250 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.pallidum:250

Q5K9F7              	100.00%		D3BTL6              	100.00%
Bootstrap support for Q5K9F7 as seed ortholog is 100%.
Bootstrap support for D3BTL6 as seed ortholog is 100%.

Group of orthologs #730. Best score 250 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.pallidum:250

Q5KLL4              	100.00%		D3BIA4              	100.00%
Bootstrap support for Q5KLL4 as seed ortholog is 100%.
Bootstrap support for D3BIA4 as seed ortholog is 100%.

Group of orthologs #731. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:37

P0CQ42              	100.00%		D3B8J3              	100.00%
                    	       		D3BFS2              	89.68%
                    	       		D3BUL8              	88.89%
                    	       		D3BC33              	86.51%
                    	       		D3AW67              	57.94%
                    	       		D3B5I9              	19.84%
Bootstrap support for P0CQ42 as seed ortholog is 99%.
Bootstrap support for D3B8J3 as seed ortholog is 96%.

Group of orthologs #732. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.pallidum:249

P0CQ58              	100.00%		D3BEH6              	100.00%
Bootstrap support for P0CQ58 as seed ortholog is 100%.
Bootstrap support for D3BEH6 as seed ortholog is 100%.

Group of orthologs #733. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.pallidum:249

P0CS80              	100.00%		D3BLE5              	100.00%
Bootstrap support for P0CS80 as seed ortholog is 100%.
Bootstrap support for D3BLE5 as seed ortholog is 100%.

Group of orthologs #734. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.pallidum:249

Q5KQ60              	100.00%		D3BQZ8              	100.00%
Bootstrap support for Q5KQ60 as seed ortholog is 100%.
Bootstrap support for D3BQZ8 as seed ortholog is 100%.

Group of orthologs #735. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.pallidum:248

Q5KCA4              	100.00%		D3B3C0              	100.00%
Bootstrap support for Q5KCA4 as seed ortholog is 100%.
Bootstrap support for D3B3C0 as seed ortholog is 100%.

Group of orthologs #736. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:171

Q5KK79              	100.00%		D3AX40              	100.00%
Bootstrap support for Q5KK79 as seed ortholog is 94%.
Bootstrap support for D3AX40 as seed ortholog is 99%.

Group of orthologs #737. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:248

Q5KDE2              	100.00%		D3BGU1              	100.00%
Bootstrap support for Q5KDE2 as seed ortholog is 99%.
Bootstrap support for D3BGU1 as seed ortholog is 100%.

Group of orthologs #738. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.pallidum:105

P0CO26              	100.00%		D3BTE4              	100.00%
Bootstrap support for P0CO26 as seed ortholog is 100%.
Bootstrap support for D3BTE4 as seed ortholog is 99%.

Group of orthologs #739. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.pallidum:120

Q5KP92              	100.00%		D3BC04              	100.00%
Bootstrap support for Q5KP92 as seed ortholog is 100%.
Bootstrap support for D3BC04 as seed ortholog is 99%.

Group of orthologs #740. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:99

Q5KPM5              	100.00%		D3BA92              	100.00%
Q5KAF6              	24.73%		
Bootstrap support for Q5KPM5 as seed ortholog is 100%.
Bootstrap support for D3BA92 as seed ortholog is 99%.

Group of orthologs #741. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:247

P0CN56              	100.00%		D3BGB9              	100.00%
Bootstrap support for P0CN56 as seed ortholog is 100%.
Bootstrap support for D3BGB9 as seed ortholog is 100%.

Group of orthologs #742. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

Q5KHX7              	100.00%		D3BAC1              	100.00%
Bootstrap support for Q5KHX7 as seed ortholog is 99%.
Bootstrap support for D3BAC1 as seed ortholog is 99%.

Group of orthologs #743. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:247

P0CR50              	100.00%		D3BNC9              	100.00%
Bootstrap support for P0CR50 as seed ortholog is 100%.
Bootstrap support for D3BNC9 as seed ortholog is 100%.

Group of orthologs #744. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:247

Q5KAQ7              	100.00%		D3BK79              	100.00%
Bootstrap support for Q5KAQ7 as seed ortholog is 100%.
Bootstrap support for D3BK79 as seed ortholog is 100%.

Group of orthologs #745. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:247

P0CQ56              	100.00%		D3BRK4              	100.00%
Bootstrap support for P0CQ56 as seed ortholog is 100%.
Bootstrap support for D3BRK4 as seed ortholog is 100%.

Group of orthologs #746. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.pallidum:247

Q5KH61              	100.00%		D3BKA5              	100.00%
Bootstrap support for Q5KH61 as seed ortholog is 100%.
Bootstrap support for D3BKA5 as seed ortholog is 100%.

Group of orthologs #747. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.pallidum:246

Q5KDU8              	100.00%		D3BAI7              	100.00%
Bootstrap support for Q5KDU8 as seed ortholog is 100%.
Bootstrap support for D3BAI7 as seed ortholog is 100%.

Group of orthologs #748. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.pallidum:246

Q5KA19              	100.00%		D3BTV2              	100.00%
Bootstrap support for Q5KA19 as seed ortholog is 100%.
Bootstrap support for D3BTV2 as seed ortholog is 100%.

Group of orthologs #749. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:87

Q5KJU9              	100.00%		D3BLP1              	100.00%
Bootstrap support for Q5KJU9 as seed ortholog is 99%.
Bootstrap support for D3BLP1 as seed ortholog is 99%.

Group of orthologs #750. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.pallidum:245

Q5K8G6              	100.00%		D3BDT2              	100.00%
Bootstrap support for Q5K8G6 as seed ortholog is 100%.
Bootstrap support for D3BDT2 as seed ortholog is 100%.

Group of orthologs #751. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.pallidum:245

Q5K6V3              	100.00%		D3BNT3              	100.00%
Bootstrap support for Q5K6V3 as seed ortholog is 100%.
Bootstrap support for D3BNT3 as seed ortholog is 100%.

Group of orthologs #752. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.pallidum:244

Q5K947              	100.00%		D3AYQ3              	100.00%
Bootstrap support for Q5K947 as seed ortholog is 100%.
Bootstrap support for D3AYQ3 as seed ortholog is 100%.

Group of orthologs #753. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.pallidum:244

Q5KGE3              	100.00%		D3BAC7              	100.00%
Bootstrap support for Q5KGE3 as seed ortholog is 100%.
Bootstrap support for D3BAC7 as seed ortholog is 100%.

Group of orthologs #754. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:85

Q5K9H6              	100.00%		D3BAX3              	100.00%
Q5KGF6              	12.51%		D3B6W9              	54.84%
                    	       		D3AZC2              	13.02%
                    	       		D3BBK0              	10.06%
Bootstrap support for Q5K9H6 as seed ortholog is 100%.
Bootstrap support for D3BAX3 as seed ortholog is 92%.

Group of orthologs #755. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:243

Q5K890              	100.00%		D3BE93              	100.00%
Bootstrap support for Q5K890 as seed ortholog is 100%.
Bootstrap support for D3BE93 as seed ortholog is 100%.

Group of orthologs #756. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:243

Q5KP54              	100.00%		D3BAF6              	100.00%
Bootstrap support for Q5KP54 as seed ortholog is 100%.
Bootstrap support for D3BAF6 as seed ortholog is 100%.

Group of orthologs #757. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:243

Q5KNW3              	100.00%		D3BBS3              	100.00%
Bootstrap support for Q5KNW3 as seed ortholog is 100%.
Bootstrap support for D3BBS3 as seed ortholog is 100%.

Group of orthologs #758. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.pallidum:9

Q5KDX3              	100.00%		D3BT90              	100.00%
Bootstrap support for Q5KDX3 as seed ortholog is 100%.
Bootstrap support for D3BT90 as seed ortholog is 99%.

Group of orthologs #759. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:104

Q5KP75              	100.00%		D3BM92              	100.00%
                    	       		D3BAM1              	7.30%
                    	       		D3B9N2              	5.60%
                    	       		D3AY23              	5.43%
Bootstrap support for Q5KP75 as seed ortholog is 100%.
Bootstrap support for D3BM92 as seed ortholog is 99%.

Group of orthologs #760. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:89

P0CM04              	100.00%		D3BFQ8              	100.00%
Bootstrap support for P0CM04 as seed ortholog is 99%.
Bootstrap support for D3BFQ8 as seed ortholog is 96%.

Group of orthologs #761. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.pallidum:98

Q5KHY1              	100.00%		D3BVF2              	100.00%
Bootstrap support for Q5KHY1 as seed ortholog is 100%.
Bootstrap support for D3BVF2 as seed ortholog is 98%.

Group of orthologs #762. Best score 241 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:180

Q5KMX1              	100.00%		D3BG93              	100.00%
Bootstrap support for Q5KMX1 as seed ortholog is 99%.
Bootstrap support for D3BG93 as seed ortholog is 99%.

Group of orthologs #763. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.pallidum:240

Q5KKK5              	100.00%		D3B1R4              	100.00%
Bootstrap support for Q5KKK5 as seed ortholog is 100%.
Bootstrap support for D3B1R4 as seed ortholog is 100%.

Group of orthologs #764. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.pallidum:240

Q5KA61              	100.00%		D3BEI1              	100.00%
Bootstrap support for Q5KA61 as seed ortholog is 99%.
Bootstrap support for D3BEI1 as seed ortholog is 100%.

Group of orthologs #765. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.pallidum:123

Q5KB90              	100.00%		D3BH32              	100.00%
Bootstrap support for Q5KB90 as seed ortholog is 98%.
Bootstrap support for D3BH32 as seed ortholog is 99%.

Group of orthologs #766. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.pallidum:140

Q5KLY0              	100.00%		D3BB75              	100.00%
Bootstrap support for Q5KLY0 as seed ortholog is 100%.
Bootstrap support for D3BB75 as seed ortholog is 99%.

Group of orthologs #767. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.pallidum:239

Q5KPZ1              	100.00%		D3BBF0              	100.00%
Bootstrap support for Q5KPZ1 as seed ortholog is 100%.
Bootstrap support for D3BBF0 as seed ortholog is 100%.

Group of orthologs #768. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.pallidum:239

Q5KEA8              	100.00%		D3BLY8              	100.00%
Bootstrap support for Q5KEA8 as seed ortholog is 100%.
Bootstrap support for D3BLY8 as seed ortholog is 100%.

Group of orthologs #769. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.pallidum:239

Q5KPI8              	100.00%		D3BGF6              	100.00%
Bootstrap support for Q5KPI8 as seed ortholog is 100%.
Bootstrap support for D3BGF6 as seed ortholog is 100%.

Group of orthologs #770. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.pallidum:55

Q5KGG9              	100.00%		D3AZA3              	100.00%
Bootstrap support for Q5KGG9 as seed ortholog is 100%.
Bootstrap support for D3AZA3 as seed ortholog is 88%.

Group of orthologs #771. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.pallidum:238

Q5KDT2              	100.00%		D3BLM9              	100.00%
Bootstrap support for Q5KDT2 as seed ortholog is 100%.
Bootstrap support for D3BLM9 as seed ortholog is 100%.

Group of orthologs #772. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.pallidum:238

Q5KM57              	100.00%		D3BMI6              	100.00%
Bootstrap support for Q5KM57 as seed ortholog is 100%.
Bootstrap support for D3BMI6 as seed ortholog is 100%.

Group of orthologs #773. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.pallidum:127

Q5KCQ7              	100.00%		D3B5R2              	100.00%
                    	       		D3B4A8              	43.65%
                    	       		D3B5I2              	23.86%
Bootstrap support for Q5KCQ7 as seed ortholog is 99%.
Bootstrap support for D3B5R2 as seed ortholog is 100%.

Group of orthologs #774. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:45

P0CP78              	100.00%		D3AYC5              	100.00%
Bootstrap support for P0CP78 as seed ortholog is 99%.
Bootstrap support for D3AYC5 as seed ortholog is 96%.

Group of orthologs #775. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.pallidum:237

Q5K8T0              	100.00%		D3BJX9              	100.00%
Bootstrap support for Q5K8T0 as seed ortholog is 100%.
Bootstrap support for D3BJX9 as seed ortholog is 100%.

Group of orthologs #776. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:90

Q5KJK0              	100.00%		D3BBP5              	100.00%
Bootstrap support for Q5KJK0 as seed ortholog is 100%.
Bootstrap support for D3BBP5 as seed ortholog is 100%.

Group of orthologs #777. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.pallidum:236

P0CO48              	100.00%		D3B5G1              	100.00%
                    	       		D3BB79              	18.23%
Bootstrap support for P0CO48 as seed ortholog is 99%.
Bootstrap support for D3B5G1 as seed ortholog is 100%.

Group of orthologs #778. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.pallidum:93

Q5K9I3              	100.00%		D3BJ95              	100.00%
Bootstrap support for Q5K9I3 as seed ortholog is 100%.
Bootstrap support for D3BJ95 as seed ortholog is 86%.

Group of orthologs #779. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KBP8              	100.00%		D3AVN8              	100.00%
Bootstrap support for Q5KBP8 as seed ortholog is 100%.
Bootstrap support for D3AVN8 as seed ortholog is 100%.

Group of orthologs #780. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KDM0              	100.00%		D3B0H6              	100.00%
Bootstrap support for Q5KDM0 as seed ortholog is 100%.
Bootstrap support for D3B0H6 as seed ortholog is 100%.

Group of orthologs #781. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KIP3              	100.00%		D3B6W0              	100.00%
Bootstrap support for Q5KIP3 as seed ortholog is 100%.
Bootstrap support for D3B6W0 as seed ortholog is 100%.

Group of orthologs #782. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.pallidum:143

Q5KF39              	100.00%		D3BHB8              	100.00%
Bootstrap support for Q5KF39 as seed ortholog is 99%.
Bootstrap support for D3BHB8 as seed ortholog is 99%.

Group of orthologs #783. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KGW0              	100.00%		D3BMH8              	100.00%
Bootstrap support for Q5KGW0 as seed ortholog is 100%.
Bootstrap support for D3BMH8 as seed ortholog is 100%.

Group of orthologs #784. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KJJ3              	100.00%		D3BLC2              	100.00%
Bootstrap support for Q5KJJ3 as seed ortholog is 100%.
Bootstrap support for D3BLC2 as seed ortholog is 100%.

Group of orthologs #785. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KPB8              	100.00%		D3BJR6              	100.00%
Bootstrap support for Q5KPB8 as seed ortholog is 100%.
Bootstrap support for D3BJR6 as seed ortholog is 100%.

Group of orthologs #786. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.pallidum:235

Q5KII0              	100.00%		D3BT14              	100.00%
Bootstrap support for Q5KII0 as seed ortholog is 100%.
Bootstrap support for D3BT14 as seed ortholog is 100%.

Group of orthologs #787. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:234 P.pallidum:234

Q5KQ29              	100.00%		D3BR11              	100.00%
                    	       		D3BHF8              	8.43%
                    	       		D3B0M3              	5.48%
Bootstrap support for Q5KQ29 as seed ortholog is 100%.
Bootstrap support for D3BR11 as seed ortholog is 100%.

Group of orthologs #788. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:234 P.pallidum:234

P0CO78              	100.00%		D3AZH4              	100.00%
Bootstrap support for P0CO78 as seed ortholog is 100%.
Bootstrap support for D3AZH4 as seed ortholog is 100%.

Group of orthologs #789. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:234 P.pallidum:234

P0CP10              	100.00%		D3BII7              	100.00%
Bootstrap support for P0CP10 as seed ortholog is 100%.
Bootstrap support for D3BII7 as seed ortholog is 100%.

Group of orthologs #790. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.pallidum:233

Q5KAM1              	100.00%		D3B8B3              	100.00%
Bootstrap support for Q5KAM1 as seed ortholog is 100%.
Bootstrap support for D3B8B3 as seed ortholog is 100%.

Group of orthologs #791. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.pallidum:233

P0CN24              	100.00%		D3BQD4              	100.00%
Bootstrap support for P0CN24 as seed ortholog is 100%.
Bootstrap support for D3BQD4 as seed ortholog is 100%.

Group of orthologs #792. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.pallidum:118

Q5KBA9              	100.00%		D3BP64              	100.00%
Bootstrap support for Q5KBA9 as seed ortholog is 100%.
Bootstrap support for D3BP64 as seed ortholog is 100%.

Group of orthologs #793. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.pallidum:233

Q5KJB8              	100.00%		D3BVI2              	100.00%
Bootstrap support for Q5KJB8 as seed ortholog is 100%.
Bootstrap support for D3BVI2 as seed ortholog is 100%.

Group of orthologs #794. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:16 P.pallidum:55

Q5KB17              	100.00%		D3BGZ5              	100.00%
                    	       		D3BKT2              	15.24%
Bootstrap support for Q5KB17 as seed ortholog is 67%.
Alternative seed ortholog is Q5KCH7 (16 bits away from this cluster)
Bootstrap support for D3BGZ5 as seed ortholog is 95%.

Group of orthologs #795. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.pallidum:232

P0CM14              	100.00%		D3AYM5              	100.00%
Bootstrap support for P0CM14 as seed ortholog is 100%.
Bootstrap support for D3AYM5 as seed ortholog is 100%.

Group of orthologs #796. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:106

Q5K8L0              	100.00%		D3BL52              	100.00%
Bootstrap support for Q5K8L0 as seed ortholog is 99%.
Bootstrap support for D3BL52 as seed ortholog is 99%.

Group of orthologs #797. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:85

Q5KB12              	100.00%		D3B217              	100.00%
Bootstrap support for Q5KB12 as seed ortholog is 100%.
Bootstrap support for D3B217 as seed ortholog is 97%.

Group of orthologs #798. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:231

Q5KBS2              	100.00%		D3B6T4              	100.00%
Bootstrap support for Q5KBS2 as seed ortholog is 100%.
Bootstrap support for D3B6T4 as seed ortholog is 100%.

Group of orthologs #799. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:231

Q5KCP8              	100.00%		D3B761              	100.00%
Bootstrap support for Q5KCP8 as seed ortholog is 100%.
Bootstrap support for D3B761 as seed ortholog is 100%.

Group of orthologs #800. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:231

Q5KDF6              	100.00%		D3B886              	100.00%
Bootstrap support for Q5KDF6 as seed ortholog is 100%.
Bootstrap support for D3B886 as seed ortholog is 100%.

Group of orthologs #801. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.pallidum:231

Q5KLE3              	100.00%		D3BC65              	100.00%
Bootstrap support for Q5KLE3 as seed ortholog is 100%.
Bootstrap support for D3BC65 as seed ortholog is 100%.

Group of orthologs #802. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:78

Q5KGZ4              	100.00%		D3B0H3              	100.00%
Bootstrap support for Q5KGZ4 as seed ortholog is 99%.
Bootstrap support for D3B0H3 as seed ortholog is 99%.

Group of orthologs #803. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.pallidum:230

Q5KKS4              	100.00%		D3BAF1              	100.00%
Bootstrap support for Q5KKS4 as seed ortholog is 100%.
Bootstrap support for D3BAF1 as seed ortholog is 100%.

Group of orthologs #804. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.pallidum:230

Q5KL66              	100.00%		D3BCA4              	100.00%
Bootstrap support for Q5KL66 as seed ortholog is 100%.
Bootstrap support for D3BCA4 as seed ortholog is 100%.

Group of orthologs #805. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.pallidum:66

Q5KMM0              	100.00%		D3BQE6              	100.00%
Q5KML4              	46.43%		
Bootstrap support for Q5KMM0 as seed ortholog is 95%.
Bootstrap support for D3BQE6 as seed ortholog is 99%.

Group of orthologs #806. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.pallidum:229

P0CR18              	100.00%		D3BKB6              	100.00%
Bootstrap support for P0CR18 as seed ortholog is 100%.
Bootstrap support for D3BKB6 as seed ortholog is 100%.

Group of orthologs #807. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.pallidum:229

Q5KLL2              	100.00%		D3BHB5              	100.00%
Bootstrap support for Q5KLL2 as seed ortholog is 100%.
Bootstrap support for D3BHB5 as seed ortholog is 100%.

Group of orthologs #808. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.pallidum:228

Q5KEW8              	100.00%		D3BIR3              	100.00%
Q5KD36              	38.89%		
Q5KDR9              	38.43%		
Bootstrap support for Q5KEW8 as seed ortholog is 100%.
Bootstrap support for D3BIR3 as seed ortholog is 100%.

Group of orthologs #809. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.pallidum:162

P0CS32              	100.00%		D3BT42              	100.00%
                    	       		D3BT43              	85.73%
Bootstrap support for P0CS32 as seed ortholog is 100%.
Bootstrap support for D3BT42 as seed ortholog is 100%.

Group of orthologs #810. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.pallidum:228

Q5KJ52              	100.00%		D3AZF2              	100.00%
Bootstrap support for Q5KJ52 as seed ortholog is 53%.
Alternative seed ortholog is Q5KMP4 (5 bits away from this cluster)
Bootstrap support for D3AZF2 as seed ortholog is 100%.

Group of orthologs #811. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.pallidum:228

Q5KCK0              	100.00%		D3B8I8              	100.00%
Bootstrap support for Q5KCK0 as seed ortholog is 100%.
Bootstrap support for D3B8I8 as seed ortholog is 100%.

Group of orthologs #812. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.pallidum:228

Q5KL73              	100.00%		D3BG97              	100.00%
Bootstrap support for Q5KL73 as seed ortholog is 100%.
Bootstrap support for D3BG97 as seed ortholog is 100%.

Group of orthologs #813. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.pallidum:227

Q5K6V6              	100.00%		D3B9J0              	100.00%
Bootstrap support for Q5K6V6 as seed ortholog is 100%.
Bootstrap support for D3B9J0 as seed ortholog is 100%.

Group of orthologs #814. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.pallidum:227

Q5KH08              	100.00%		D3BJY4              	100.00%
Bootstrap support for Q5KH08 as seed ortholog is 100%.
Bootstrap support for D3BJY4 as seed ortholog is 100%.

Group of orthologs #815. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.pallidum:226

P0CN20              	100.00%		D3B7L1              	100.00%
Bootstrap support for P0CN20 as seed ortholog is 100%.
Bootstrap support for D3B7L1 as seed ortholog is 100%.

Group of orthologs #816. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.pallidum:226

P0CP52              	100.00%		D3BA97              	100.00%
Bootstrap support for P0CP52 as seed ortholog is 100%.
Bootstrap support for D3BA97 as seed ortholog is 100%.

Group of orthologs #817. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.pallidum:226

Q5KK16              	100.00%		D3B913              	100.00%
Bootstrap support for Q5KK16 as seed ortholog is 100%.
Bootstrap support for D3B913 as seed ortholog is 100%.

Group of orthologs #818. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.pallidum:159

Q5KEZ0              	100.00%		D3BFI3              	100.00%
Bootstrap support for Q5KEZ0 as seed ortholog is 100%.
Bootstrap support for D3BFI3 as seed ortholog is 99%.

Group of orthologs #819. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.pallidum:226

Q5KLE6              	100.00%		D3BH65              	100.00%
Bootstrap support for Q5KLE6 as seed ortholog is 100%.
Bootstrap support for D3BH65 as seed ortholog is 100%.

Group of orthologs #820. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:225

Q5K9D1              	100.00%		D3B0H8              	100.00%
Q5KI95              	100.00%		D3BN01              	100.00%
Q5KH94              	42.18%		
Q5KLM8              	10.17%		
Bootstrap support for Q5K9D1 as seed ortholog is 96%.
Bootstrap support for Q5KI95 as seed ortholog is 76%.
Bootstrap support for D3B0H8 as seed ortholog is 100%.
Bootstrap support for D3BN01 as seed ortholog is 100%.

Group of orthologs #821. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:225

Q5KFQ7              	100.00%		D3B2U7              	100.00%
Bootstrap support for Q5KFQ7 as seed ortholog is 100%.
Bootstrap support for D3B2U7 as seed ortholog is 100%.

Group of orthologs #822. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:225

Q5K6T5              	100.00%		D3BDT3              	100.00%
Bootstrap support for Q5K6T5 as seed ortholog is 100%.
Bootstrap support for D3BDT3 as seed ortholog is 100%.

Group of orthologs #823. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:225

Q5KMT0              	100.00%		D3B3Z8              	100.00%
Bootstrap support for Q5KMT0 as seed ortholog is 100%.
Bootstrap support for D3B3Z8 as seed ortholog is 100%.

Group of orthologs #824. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:225

Q5KKY7              	100.00%		D3B6T5              	100.00%
Bootstrap support for Q5KKY7 as seed ortholog is 100%.
Bootstrap support for D3B6T5 as seed ortholog is 100%.

Group of orthologs #825. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:225

Q5KJR0              	100.00%		D3BCX8              	100.00%
Bootstrap support for Q5KJR0 as seed ortholog is 100%.
Bootstrap support for D3BCX8 as seed ortholog is 100%.

Group of orthologs #826. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:110

Q5KBS3              	100.00%		D3BU03              	100.00%
Bootstrap support for Q5KBS3 as seed ortholog is 100%.
Bootstrap support for D3BU03 as seed ortholog is 99%.

Group of orthologs #827. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.pallidum:225

Q5KE84              	100.00%		D3BSV5              	100.00%
Bootstrap support for Q5KE84 as seed ortholog is 100%.
Bootstrap support for D3BSV5 as seed ortholog is 100%.

Group of orthologs #828. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:126

Q5KKH7              	100.00%		D3BUR4              	100.00%
Bootstrap support for Q5KKH7 as seed ortholog is 99%.
Bootstrap support for D3BUR4 as seed ortholog is 99%.

Group of orthologs #829. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.pallidum:115

Q5KH15              	100.00%		D3AVU2              	100.00%
Bootstrap support for Q5KH15 as seed ortholog is 100%.
Bootstrap support for D3AVU2 as seed ortholog is 100%.

Group of orthologs #830. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.pallidum:224

Q5K9W6              	100.00%		D3B9B9              	100.00%
Bootstrap support for Q5K9W6 as seed ortholog is 100%.
Bootstrap support for D3B9B9 as seed ortholog is 100%.

Group of orthologs #831. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.pallidum:224

Q5KBW9              	100.00%		D3BBQ8              	100.00%
Bootstrap support for Q5KBW9 as seed ortholog is 100%.
Bootstrap support for D3BBQ8 as seed ortholog is 100%.

Group of orthologs #832. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.pallidum:224

Q5KQ17              	100.00%		D3BDG0              	100.00%
Bootstrap support for Q5KQ17 as seed ortholog is 100%.
Bootstrap support for D3BDG0 as seed ortholog is 100%.

Group of orthologs #833. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:223

P0CO44              	100.00%		D3B5I1              	100.00%
Bootstrap support for P0CO44 as seed ortholog is 99%.
Bootstrap support for D3B5I1 as seed ortholog is 100%.

Group of orthologs #834. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.pallidum:223

Q5KF16              	100.00%		D3AZL5              	100.00%
Bootstrap support for Q5KF16 as seed ortholog is 100%.
Bootstrap support for D3AZL5 as seed ortholog is 100%.

Group of orthologs #835. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.pallidum:223

Q5KLA2              	100.00%		D3BHS9              	100.00%
Bootstrap support for Q5KLA2 as seed ortholog is 100%.
Bootstrap support for D3BHS9 as seed ortholog is 100%.

Group of orthologs #836. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.pallidum:223

Q5KP63              	100.00%		D3BFU2              	100.00%
Bootstrap support for Q5KP63 as seed ortholog is 100%.
Bootstrap support for D3BFU2 as seed ortholog is 100%.

Group of orthologs #837. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:222 P.pallidum:222

Q5KGF9              	100.00%		D3AXB8              	100.00%
Bootstrap support for Q5KGF9 as seed ortholog is 100%.
Bootstrap support for D3AXB8 as seed ortholog is 100%.

Group of orthologs #838. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:116

Q5KNK4              	100.00%		D3AYJ1              	100.00%
Bootstrap support for Q5KNK4 as seed ortholog is 95%.
Bootstrap support for D3AYJ1 as seed ortholog is 99%.

Group of orthologs #839. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:222 P.pallidum:130

P40909              	100.00%		D3BHB9              	100.00%
Bootstrap support for P40909 as seed ortholog is 100%.
Bootstrap support for D3BHB9 as seed ortholog is 100%.

Group of orthologs #840. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:222 P.pallidum:88

Q5KKN5              	100.00%		D3BIK0              	100.00%
Bootstrap support for Q5KKN5 as seed ortholog is 100%.
Bootstrap support for D3BIK0 as seed ortholog is 99%.

Group of orthologs #841. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.pallidum:220

Q5KFT0              	100.00%		D3B615              	100.00%
Bootstrap support for Q5KFT0 as seed ortholog is 100%.
Bootstrap support for D3B615 as seed ortholog is 100%.

Group of orthologs #842. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:44

P0CP82              	100.00%		D3BGH1              	100.00%
Bootstrap support for P0CP82 as seed ortholog is 98%.
Bootstrap support for D3BGH1 as seed ortholog is 95%.

Group of orthologs #843. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.pallidum:220

Q5KJZ5              	100.00%		D3BQ91              	100.00%
Bootstrap support for Q5KJZ5 as seed ortholog is 100%.
Bootstrap support for D3BQ91 as seed ortholog is 100%.

Group of orthologs #844. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:134

Q5KEK2              	100.00%		D3BVR5              	100.00%
Bootstrap support for Q5KEK2 as seed ortholog is 99%.
Bootstrap support for D3BVR5 as seed ortholog is 99%.

Group of orthologs #845. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.pallidum:220

Q5KNS1              	100.00%		D3BUZ2              	100.00%
Bootstrap support for Q5KNS1 as seed ortholog is 100%.
Bootstrap support for D3BUZ2 as seed ortholog is 100%.

Group of orthologs #846. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.pallidum:219

Q5K9P5              	100.00%		D3B5G2              	100.00%
Bootstrap support for Q5K9P5 as seed ortholog is 100%.
Bootstrap support for D3B5G2 as seed ortholog is 100%.

Group of orthologs #847. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.pallidum:219

Q5KA01              	100.00%		D3BDL0              	100.00%
Bootstrap support for Q5KA01 as seed ortholog is 100%.
Bootstrap support for D3BDL0 as seed ortholog is 100%.

Group of orthologs #848. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.pallidum:219

Q5KIJ1              	100.00%		D3BFQ0              	100.00%
Bootstrap support for Q5KIJ1 as seed ortholog is 100%.
Bootstrap support for D3BFQ0 as seed ortholog is 100%.

Group of orthologs #849. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.pallidum:219

Q5KER6              	100.00%		D3BN39              	100.00%
Bootstrap support for Q5KER6 as seed ortholog is 100%.
Bootstrap support for D3BN39 as seed ortholog is 100%.

Group of orthologs #850. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.pallidum:218

P0CN50              	100.00%		D3AVQ5              	100.00%
Bootstrap support for P0CN50 as seed ortholog is 100%.
Bootstrap support for D3AVQ5 as seed ortholog is 100%.

Group of orthologs #851. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.pallidum:218

Q5KJJ4              	100.00%		D3AW49              	100.00%
Bootstrap support for Q5KJJ4 as seed ortholog is 100%.
Bootstrap support for D3AW49 as seed ortholog is 100%.

Group of orthologs #852. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.pallidum:218

Q5KBP2              	100.00%		D3BT31              	100.00%
Bootstrap support for Q5KBP2 as seed ortholog is 100%.
Bootstrap support for D3BT31 as seed ortholog is 100%.

Group of orthologs #853. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:217

Q5KIE7              	100.00%		D3AWB0              	100.00%
Bootstrap support for Q5KIE7 as seed ortholog is 100%.
Bootstrap support for D3AWB0 as seed ortholog is 100%.

Group of orthologs #854. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:217

Q5KML9              	100.00%		D3AXN2              	100.00%
Bootstrap support for Q5KML9 as seed ortholog is 100%.
Bootstrap support for D3AXN2 as seed ortholog is 100%.

Group of orthologs #855. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:48

Q5KJH5              	100.00%		D3B3V9              	100.00%
Bootstrap support for Q5KJH5 as seed ortholog is 93%.
Bootstrap support for D3B3V9 as seed ortholog is 86%.

Group of orthologs #856. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:101

Q5KH50              	100.00%		D3B972              	100.00%
Bootstrap support for Q5KH50 as seed ortholog is 100%.
Bootstrap support for D3B972 as seed ortholog is 99%.

Group of orthologs #857. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.pallidum:217

Q5KJP6              	100.00%		D3BKT0              	100.00%
Bootstrap support for Q5KJP6 as seed ortholog is 100%.
Bootstrap support for D3BKT0 as seed ortholog is 100%.

Group of orthologs #858. Best score 216 bits
Score difference with first non-orthologous sequence - C.neoformans:216 P.pallidum:216

Q5KH36              	100.00%		D3B4Z8              	100.00%
                    	       		D3BHS8              	22.65%
Bootstrap support for Q5KH36 as seed ortholog is 100%.
Bootstrap support for D3B4Z8 as seed ortholog is 100%.

Group of orthologs #859. Best score 216 bits
Score difference with first non-orthologous sequence - C.neoformans:216 P.pallidum:216

Q5KFJ7              	100.00%		D3BLR1              	100.00%
Bootstrap support for Q5KFJ7 as seed ortholog is 100%.
Bootstrap support for D3BLR1 as seed ortholog is 100%.

Group of orthologs #860. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.pallidum:215

Q5KJ40              	100.00%		D3B264              	100.00%
Bootstrap support for Q5KJ40 as seed ortholog is 100%.
Bootstrap support for D3B264 as seed ortholog is 100%.

Group of orthologs #861. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.pallidum:215

Q5KGU0              	100.00%		D3BI96              	100.00%
Bootstrap support for Q5KGU0 as seed ortholog is 67%.
Alternative seed ortholog is Q5KEK8 (19 bits away from this cluster)
Bootstrap support for D3BI96 as seed ortholog is 100%.

Group of orthologs #862. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.pallidum:89

Q5KCD5              	100.00%		D3BN92              	100.00%
Bootstrap support for Q5KCD5 as seed ortholog is 100%.
Bootstrap support for D3BN92 as seed ortholog is 95%.

Group of orthologs #863. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.pallidum:215

Q5KIN9              	100.00%		D3BSQ9              	100.00%
Bootstrap support for Q5KIN9 as seed ortholog is 100%.
Bootstrap support for D3BSQ9 as seed ortholog is 100%.

Group of orthologs #864. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.pallidum:214

Q5KJJ7              	100.00%		D3B1C2              	100.00%
Bootstrap support for Q5KJJ7 as seed ortholog is 100%.
Bootstrap support for D3B1C2 as seed ortholog is 100%.

Group of orthologs #865. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.pallidum:214

Q5KMR3              	100.00%		D3B0K1              	100.00%
Bootstrap support for Q5KMR3 as seed ortholog is 100%.
Bootstrap support for D3B0K1 as seed ortholog is 100%.

Group of orthologs #866. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.pallidum:214

P0CM62              	100.00%		D3BH79              	100.00%
Bootstrap support for P0CM62 as seed ortholog is 100%.
Bootstrap support for D3BH79 as seed ortholog is 100%.

Group of orthologs #867. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.pallidum:214

Q5KPW7              	100.00%		D3BM11              	100.00%
Bootstrap support for Q5KPW7 as seed ortholog is 100%.
Bootstrap support for D3BM11 as seed ortholog is 100%.

Group of orthologs #868. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:213

P0CQ20              	100.00%		D3B895              	100.00%
P0CQ18              	50.83%		
Bootstrap support for P0CQ20 as seed ortholog is 100%.
Bootstrap support for D3B895 as seed ortholog is 100%.

Group of orthologs #869. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:213

Q5K8G1              	100.00%		D3AWD3              	100.00%
Bootstrap support for Q5K8G1 as seed ortholog is 100%.
Bootstrap support for D3AWD3 as seed ortholog is 100%.

Group of orthologs #870. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:51

P0CS16              	100.00%		D3B0N1              	100.00%
Bootstrap support for P0CS16 as seed ortholog is 100%.
Bootstrap support for D3B0N1 as seed ortholog is 99%.

Group of orthologs #871. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:124

Q5K760              	100.00%		D3B601              	100.00%
Bootstrap support for Q5K760 as seed ortholog is 100%.
Bootstrap support for D3B601 as seed ortholog is 99%.

Group of orthologs #872. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:213

Q5K8G0              	100.00%		D3B813              	100.00%
Bootstrap support for Q5K8G0 as seed ortholog is 100%.
Bootstrap support for D3B813 as seed ortholog is 100%.

Group of orthologs #873. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:213

P0CN42              	100.00%		D3BGC0              	100.00%
Bootstrap support for P0CN42 as seed ortholog is 100%.
Bootstrap support for D3BGC0 as seed ortholog is 100%.

Group of orthologs #874. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.pallidum:213

P0CP92              	100.00%		D3BIF0              	100.00%
Bootstrap support for P0CP92 as seed ortholog is 100%.
Bootstrap support for D3BIF0 as seed ortholog is 100%.

Group of orthologs #875. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.pallidum:212

Q5K7E6              	100.00%		D3B4U2              	100.00%
Bootstrap support for Q5K7E6 as seed ortholog is 100%.
Bootstrap support for D3B4U2 as seed ortholog is 100%.

Group of orthologs #876. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.pallidum:212

Q5KEF4              	100.00%		D3AZB1              	100.00%
Bootstrap support for Q5KEF4 as seed ortholog is 100%.
Bootstrap support for D3AZB1 as seed ortholog is 100%.

Group of orthologs #877. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:78

P0CQ94              	100.00%		D3BG42              	100.00%
Bootstrap support for P0CQ94 as seed ortholog is 99%.
Bootstrap support for D3BG42 as seed ortholog is 96%.

Group of orthologs #878. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.pallidum:212

Q5KDJ7              	100.00%		D3BK61              	100.00%
Bootstrap support for Q5KDJ7 as seed ortholog is 100%.
Bootstrap support for D3BK61 as seed ortholog is 100%.

Group of orthologs #879. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.pallidum:212

Q5KKQ0              	100.00%		D3BM56              	100.00%
Bootstrap support for Q5KKQ0 as seed ortholog is 100%.
Bootstrap support for D3BM56 as seed ortholog is 100%.

Group of orthologs #880. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.pallidum:212

Q5KCS1              	100.00%		D3BV19              	100.00%
Bootstrap support for Q5KCS1 as seed ortholog is 100%.
Bootstrap support for D3BV19 as seed ortholog is 100%.

Group of orthologs #881. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.pallidum:211

Q5KI33              	100.00%		D3BH44              	100.00%
Bootstrap support for Q5KI33 as seed ortholog is 100%.
Bootstrap support for D3BH44 as seed ortholog is 100%.

Group of orthologs #882. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.pallidum:211

Q5KK07              	100.00%		D3BPT5              	100.00%
Bootstrap support for Q5KK07 as seed ortholog is 100%.
Bootstrap support for D3BPT5 as seed ortholog is 100%.

Group of orthologs #883. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KCF1              	100.00%		D3BM70              	100.00%
                    	       		D3BC30              	37.79%
                    	       		D3B495              	25.76%
                    	       		D3BC42              	25.13%
                    	       		D3BC44              	24.51%
                    	       		D3BH17              	24.24%
                    	       		D3BQT6              	19.39%
                    	       		D3AVL1              	9.52%
                    	       		D3BD23              	9.16%
Bootstrap support for Q5KCF1 as seed ortholog is 100%.
Bootstrap support for D3BM70 as seed ortholog is 100%.

Group of orthologs #884. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KLR5              	100.00%		D3B573              	100.00%
Q5K808              	27.00%		
Bootstrap support for Q5KLR5 as seed ortholog is 100%.
Bootstrap support for D3B573 as seed ortholog is 100%.

Group of orthologs #885. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

P0CS14              	100.00%		D3B0K6              	100.00%
Bootstrap support for P0CS14 as seed ortholog is 100%.
Bootstrap support for D3B0K6 as seed ortholog is 100%.

Group of orthologs #886. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:146

Q5KBE3              	100.00%		D3BCA6              	100.00%
Bootstrap support for Q5KBE3 as seed ortholog is 85%.
Bootstrap support for D3BCA6 as seed ortholog is 99%.

Group of orthologs #887. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KPZ5              	100.00%		D3B3U3              	100.00%
Bootstrap support for Q5KPZ5 as seed ortholog is 100%.
Bootstrap support for D3B3U3 as seed ortholog is 100%.

Group of orthologs #888. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:154

Q5KB57              	100.00%		D3BHK8              	100.00%
Bootstrap support for Q5KB57 as seed ortholog is 100%.
Bootstrap support for D3BHK8 as seed ortholog is 99%.

Group of orthologs #889. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KLK2              	100.00%		D3BBM0              	100.00%
Bootstrap support for Q5KLK2 as seed ortholog is 100%.
Bootstrap support for D3BBM0 as seed ortholog is 100%.

Group of orthologs #890. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KDL7              	100.00%		D3BLD1              	100.00%
Bootstrap support for Q5KDL7 as seed ortholog is 100%.
Bootstrap support for D3BLD1 as seed ortholog is 100%.

Group of orthologs #891. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KNC5              	100.00%		D3BKL0              	100.00%
Bootstrap support for Q5KNC5 as seed ortholog is 100%.
Bootstrap support for D3BKL0 as seed ortholog is 100%.

Group of orthologs #892. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.pallidum:210

Q5KP19              	100.00%		D3BNY3              	100.00%
Bootstrap support for Q5KP19 as seed ortholog is 100%.
Bootstrap support for D3BNY3 as seed ortholog is 100%.

Group of orthologs #893. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.pallidum:45

P0CO04              	100.00%		D3B633              	100.00%
Q5KMT3              	100.00%		D3BUT3              	100.00%
                    	       		D3B6K9              	48.15%
Bootstrap support for P0CO04 as seed ortholog is 99%.
Bootstrap support for Q5KMT3 as seed ortholog is 99%.
Bootstrap support for D3B633 as seed ortholog is 99%.
Bootstrap support for D3BUT3 as seed ortholog is 98%.

Group of orthologs #894. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:105

Q5KCK9              	100.00%		D3AX98              	100.00%
Bootstrap support for Q5KCK9 as seed ortholog is 100%.
Bootstrap support for D3AX98 as seed ortholog is 100%.

Group of orthologs #895. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.pallidum:209

Q5KAP5              	100.00%		D3BCA0              	100.00%
Bootstrap support for Q5KAP5 as seed ortholog is 100%.
Bootstrap support for D3BCA0 as seed ortholog is 100%.

Group of orthologs #896. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.pallidum:209

Q5KJC9              	100.00%		D3BPW6              	100.00%
Bootstrap support for Q5KJC9 as seed ortholog is 100%.
Bootstrap support for D3BPW6 as seed ortholog is 100%.

Group of orthologs #897. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.pallidum:209

Q5KPJ7              	100.00%		D3BND0              	100.00%
Bootstrap support for Q5KPJ7 as seed ortholog is 100%.
Bootstrap support for D3BND0 as seed ortholog is 100%.

Group of orthologs #898. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:96

P0CR30              	100.00%		D3B2M5              	100.00%
Bootstrap support for P0CR30 as seed ortholog is 99%.
Bootstrap support for D3B2M5 as seed ortholog is 99%.

Group of orthologs #899. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.pallidum:208

Q5KA46              	100.00%		D3B1K3              	100.00%
Bootstrap support for Q5KA46 as seed ortholog is 100%.
Bootstrap support for D3B1K3 as seed ortholog is 100%.

Group of orthologs #900. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.pallidum:208

Q5K7P6              	100.00%		D3B6X6              	100.00%
Bootstrap support for Q5K7P6 as seed ortholog is 100%.
Bootstrap support for D3B6X6 as seed ortholog is 100%.

Group of orthologs #901. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.pallidum:117

Q5KJS0              	100.00%		D3BCE7              	100.00%
Bootstrap support for Q5KJS0 as seed ortholog is 100%.
Bootstrap support for D3BCE7 as seed ortholog is 99%.

Group of orthologs #902. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.pallidum:208

Q5KFR3              	100.00%		D3BQ00              	100.00%
Bootstrap support for Q5KFR3 as seed ortholog is 100%.
Bootstrap support for D3BQ00 as seed ortholog is 100%.

Group of orthologs #903. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.pallidum:208

Q5KKR0              	100.00%		D3BMJ9              	100.00%
Bootstrap support for Q5KKR0 as seed ortholog is 100%.
Bootstrap support for D3BMJ9 as seed ortholog is 100%.

Group of orthologs #904. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.pallidum:207

Q5K6X5              	100.00%		D3AWL9              	100.00%
Bootstrap support for Q5K6X5 as seed ortholog is 100%.
Bootstrap support for D3AWL9 as seed ortholog is 100%.

Group of orthologs #905. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:162

Q5KNX4              	100.00%		D3BBE5              	100.00%
Bootstrap support for Q5KNX4 as seed ortholog is 99%.
Bootstrap support for D3BBE5 as seed ortholog is 100%.

Group of orthologs #906. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.pallidum:207

Q5KBT5              	100.00%		D3BNG5              	100.00%
Bootstrap support for Q5KBT5 as seed ortholog is 100%.
Bootstrap support for D3BNG5 as seed ortholog is 100%.

Group of orthologs #907. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.pallidum:207

Q5KP27              	100.00%		D3BG08              	100.00%
Bootstrap support for Q5KP27 as seed ortholog is 100%.
Bootstrap support for D3BG08 as seed ortholog is 100%.

Group of orthologs #908. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:71

Q5KGE7              	100.00%		D3BR84              	100.00%
Bootstrap support for Q5KGE7 as seed ortholog is 99%.
Bootstrap support for D3BR84 as seed ortholog is 99%.

Group of orthologs #909. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.pallidum:206

Q5KCA7              	100.00%		D3BT95              	100.00%
Q5KG19              	16.08%		D3B5V0              	48.81%
Q5KKM5              	6.71%		D3B0Y5              	36.03%
Bootstrap support for Q5KCA7 as seed ortholog is 100%.
Bootstrap support for D3BT95 as seed ortholog is 100%.

Group of orthologs #910. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.pallidum:112

Q5KAU2              	100.00%		D3BAG5              	100.00%
Bootstrap support for Q5KAU2 as seed ortholog is 100%.
Bootstrap support for D3BAG5 as seed ortholog is 100%.

Group of orthologs #911. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.pallidum:206

Q5KJZ3              	100.00%		D3B885              	100.00%
Bootstrap support for Q5KJZ3 as seed ortholog is 100%.
Bootstrap support for D3B885 as seed ortholog is 100%.

Group of orthologs #912. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.pallidum:206

Q5KPS5              	100.00%		D3B465              	100.00%
Bootstrap support for Q5KPS5 as seed ortholog is 100%.
Bootstrap support for D3B465 as seed ortholog is 100%.

Group of orthologs #913. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.pallidum:205

Q5KFZ3              	100.00%		D3BCD7              	100.00%
Bootstrap support for Q5KFZ3 as seed ortholog is 100%.
Bootstrap support for D3BCD7 as seed ortholog is 100%.

Group of orthologs #914. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.pallidum:205

Q5KAB1              	100.00%		D3BJY9              	100.00%
Bootstrap support for Q5KAB1 as seed ortholog is 100%.
Bootstrap support for D3BJY9 as seed ortholog is 100%.

Group of orthologs #915. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:111

Q5KGC9              	100.00%		D3BFK6              	100.00%
Bootstrap support for Q5KGC9 as seed ortholog is 87%.
Bootstrap support for D3BFK6 as seed ortholog is 97%.

Group of orthologs #916. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:94

P0CP86              	100.00%		D3BSG7              	100.00%
Bootstrap support for P0CP86 as seed ortholog is 100%.
Bootstrap support for D3BSG7 as seed ortholog is 99%.

Group of orthologs #917. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.pallidum:205

Q5KHT0              	100.00%		D3BPP6              	100.00%
Bootstrap support for Q5KHT0 as seed ortholog is 100%.
Bootstrap support for D3BPP6 as seed ortholog is 100%.

Group of orthologs #918. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.pallidum:205

Q5KL20              	100.00%		D3BS90              	100.00%
Bootstrap support for Q5KL20 as seed ortholog is 100%.
Bootstrap support for D3BS90 as seed ortholog is 100%.

Group of orthologs #919. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.pallidum:204

Q5KAX2              	100.00%		D3AX20              	100.00%
Q5KG95              	11.45%		
Bootstrap support for Q5KAX2 as seed ortholog is 100%.
Bootstrap support for D3AX20 as seed ortholog is 100%.

Group of orthologs #920. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.pallidum:36

Q5KGS1              	100.00%		D3B3M6              	100.00%
                    	       		D3BGU2              	8.22%
Bootstrap support for Q5KGS1 as seed ortholog is 90%.
Bootstrap support for D3B3M6 as seed ortholog is 93%.

Group of orthologs #921. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.pallidum:117

Q5K8Q5              	100.00%		D3AZ65              	100.00%
Bootstrap support for Q5K8Q5 as seed ortholog is 100%.
Bootstrap support for D3AZ65 as seed ortholog is 100%.

Group of orthologs #922. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.pallidum:204

P0CM34              	100.00%		D3B5S9              	100.00%
Bootstrap support for P0CM34 as seed ortholog is 100%.
Bootstrap support for D3B5S9 as seed ortholog is 100%.

Group of orthologs #923. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.pallidum:121

Q5K6U2              	100.00%		D3B5I3              	100.00%
Bootstrap support for Q5K6U2 as seed ortholog is 35%.
Alternative seed ortholog is Q5KNZ3 (11 bits away from this cluster)
Bootstrap support for D3B5I3 as seed ortholog is 99%.

Group of orthologs #924. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.pallidum:112

Q5KHD3              	100.00%		D3BAH5              	100.00%
Bootstrap support for Q5KHD3 as seed ortholog is 99%.
Bootstrap support for D3BAH5 as seed ortholog is 99%.

Group of orthologs #925. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.pallidum:204

Q5KIJ0              	100.00%		D3BBQ0              	100.00%
Bootstrap support for Q5KIJ0 as seed ortholog is 100%.
Bootstrap support for D3BBQ0 as seed ortholog is 100%.

Group of orthologs #926. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.pallidum:204

Q5KIF8              	100.00%		D3BC68              	100.00%
Bootstrap support for Q5KIF8 as seed ortholog is 100%.
Bootstrap support for D3BC68 as seed ortholog is 100%.

Group of orthologs #927. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.pallidum:203

Q5KGL6              	100.00%		D3B2G1              	100.00%
Bootstrap support for Q5KGL6 as seed ortholog is 100%.
Bootstrap support for D3B2G1 as seed ortholog is 100%.

Group of orthologs #928. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.pallidum:203

P0CO16              	100.00%		D3BCP1              	100.00%
Bootstrap support for P0CO16 as seed ortholog is 51%.
Alternative seed ortholog is P0CO18 (15 bits away from this cluster)
Bootstrap support for D3BCP1 as seed ortholog is 100%.

Group of orthologs #929. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.pallidum:203

Q5KD49              	100.00%		D3BGE8              	100.00%
Bootstrap support for Q5KD49 as seed ortholog is 100%.
Bootstrap support for D3BGE8 as seed ortholog is 100%.

Group of orthologs #930. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.pallidum:203

Q5KI67              	100.00%		D3BLY0              	100.00%
Bootstrap support for Q5KI67 as seed ortholog is 100%.
Bootstrap support for D3BLY0 as seed ortholog is 100%.

Group of orthologs #931. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:88

Q5KBK7              	100.00%		D3B850              	100.00%
                    	       		D3AXD1              	20.57%
Bootstrap support for Q5KBK7 as seed ortholog is 100%.
Bootstrap support for D3B850 as seed ortholog is 99%.

Group of orthologs #932. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:202

Q5KBH5              	100.00%		D3AXC6              	100.00%
Bootstrap support for Q5KBH5 as seed ortholog is 100%.
Bootstrap support for D3AXC6 as seed ortholog is 100%.

Group of orthologs #933. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:202

Q5KKX5              	100.00%		D3B5F9              	100.00%
Bootstrap support for Q5KKX5 as seed ortholog is 100%.
Bootstrap support for D3B5F9 as seed ortholog is 100%.

Group of orthologs #934. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:202

P0CN40              	100.00%		D3BL61              	100.00%
Bootstrap support for P0CN40 as seed ortholog is 100%.
Bootstrap support for D3BL61 as seed ortholog is 100%.

Group of orthologs #935. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.pallidum:202

Q5KK68              	100.00%		D3BHR5              	100.00%
Bootstrap support for Q5KK68 as seed ortholog is 100%.
Bootstrap support for D3BHR5 as seed ortholog is 100%.

Group of orthologs #936. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.pallidum:201

Q5KH84              	100.00%		D3AWA1              	100.00%
Bootstrap support for Q5KH84 as seed ortholog is 100%.
Bootstrap support for D3AWA1 as seed ortholog is 100%.

Group of orthologs #937. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.pallidum:201

Q5KH10              	100.00%		D3BAC6              	100.00%
Bootstrap support for Q5KH10 as seed ortholog is 100%.
Bootstrap support for D3BAC6 as seed ortholog is 100%.

Group of orthologs #938. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.pallidum:201

Q5KGU5              	100.00%		D3BHJ9              	100.00%
Bootstrap support for Q5KGU5 as seed ortholog is 100%.
Bootstrap support for D3BHJ9 as seed ortholog is 100%.

Group of orthologs #939. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.pallidum:201

Q5KIF9              	100.00%		D3BIT1              	100.00%
Bootstrap support for Q5KIF9 as seed ortholog is 100%.
Bootstrap support for D3BIT1 as seed ortholog is 100%.

Group of orthologs #940. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.pallidum:201

Q5KDH9              	100.00%		D3BPI1              	100.00%
Bootstrap support for Q5KDH9 as seed ortholog is 100%.
Bootstrap support for D3BPI1 as seed ortholog is 100%.

Group of orthologs #941. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:111

Q5KMM3              	100.00%		D3BKR3              	100.00%
Bootstrap support for Q5KMM3 as seed ortholog is 99%.
Bootstrap support for D3BKR3 as seed ortholog is 99%.

Group of orthologs #942. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.pallidum:107

Q5KMC1              	100.00%		D3B352              	100.00%
Bootstrap support for Q5KMC1 as seed ortholog is 100%.
Bootstrap support for D3B352 as seed ortholog is 99%.

Group of orthologs #943. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.pallidum:200

Q5KDW8              	100.00%		D3BBA1              	100.00%
Bootstrap support for Q5KDW8 as seed ortholog is 100%.
Bootstrap support for D3BBA1 as seed ortholog is 100%.

Group of orthologs #944. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:200

Q5KHB0              	100.00%		D3BAG4              	100.00%
Bootstrap support for Q5KHB0 as seed ortholog is 96%.
Bootstrap support for D3BAG4 as seed ortholog is 100%.

Group of orthologs #945. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:96

Q5K720              	100.00%		D3BPE3              	100.00%
Bootstrap support for Q5K720 as seed ortholog is 100%.
Bootstrap support for D3BPE3 as seed ortholog is 99%.

Group of orthologs #946. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.pallidum:200

Q5KDD6              	100.00%		D3BV90              	100.00%
Bootstrap support for Q5KDD6 as seed ortholog is 100%.
Bootstrap support for D3BV90 as seed ortholog is 100%.

Group of orthologs #947. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.pallidum:200

Q5KNU5              	100.00%		D3BQJ3              	100.00%
Bootstrap support for Q5KNU5 as seed ortholog is 100%.
Bootstrap support for D3BQJ3 as seed ortholog is 100%.

Group of orthologs #948. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:199 P.pallidum:199

Q5KBX4              	100.00%		D3BH91              	100.00%
Bootstrap support for Q5KBX4 as seed ortholog is 100%.
Bootstrap support for D3BH91 as seed ortholog is 100%.

Group of orthologs #949. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:77

P0CP84              	100.00%		D3BH42              	100.00%
Bootstrap support for P0CP84 as seed ortholog is 99%.
Bootstrap support for D3BH42 as seed ortholog is 99%.

Group of orthologs #950. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.pallidum:198

Q5K7T3              	100.00%		D3BGG2              	100.00%
Bootstrap support for Q5K7T3 as seed ortholog is 100%.
Bootstrap support for D3BGG2 as seed ortholog is 100%.

Group of orthologs #951. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.pallidum:198

Q5K6X3              	100.00%		D3BNF4              	100.00%
Bootstrap support for Q5K6X3 as seed ortholog is 100%.
Bootstrap support for D3BNF4 as seed ortholog is 100%.

Group of orthologs #952. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.pallidum:198

Q5KIY7              	100.00%		D3BF12              	100.00%
Bootstrap support for Q5KIY7 as seed ortholog is 100%.
Bootstrap support for D3BF12 as seed ortholog is 100%.

Group of orthologs #953. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.pallidum:198

Q5KG94              	100.00%		D3BN12              	100.00%
Bootstrap support for Q5KG94 as seed ortholog is 100%.
Bootstrap support for D3BN12 as seed ortholog is 100%.

Group of orthologs #954. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.pallidum:197

P0CS66              	100.00%		D3BGI1              	100.00%
                    	       		D3BSZ1              	16.67%
                    	       		D3B8C9              	12.07%
Bootstrap support for P0CS66 as seed ortholog is 100%.
Bootstrap support for D3BGI1 as seed ortholog is 100%.

Group of orthologs #955. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.pallidum:197

Q5K8Y6              	100.00%		D3BN47              	100.00%
Bootstrap support for Q5K8Y6 as seed ortholog is 100%.
Bootstrap support for D3BN47 as seed ortholog is 100%.

Group of orthologs #956. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.pallidum:196

Q5K8K0              	100.00%		D3AXW1              	100.00%
Bootstrap support for Q5K8K0 as seed ortholog is 100%.
Bootstrap support for D3AXW1 as seed ortholog is 100%.

Group of orthologs #957. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.pallidum:112

Q5KIM7              	100.00%		D3BH67              	100.00%
Bootstrap support for Q5KIM7 as seed ortholog is 99%.
Bootstrap support for D3BH67 as seed ortholog is 99%.

Group of orthologs #958. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.pallidum:196

Q5KED8              	100.00%		D3BPU5              	100.00%
Bootstrap support for Q5KED8 as seed ortholog is 100%.
Bootstrap support for D3BPU5 as seed ortholog is 100%.

Group of orthologs #959. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.pallidum:195

Q5KEZ9              	100.00%		D3B3L6              	100.00%
                    	       		D3BKX9              	40.37%
                    	       		D3B3L7              	37.87%
                    	       		D3B4G1              	17.74%
                    	       		D3BUJ2              	12.19%
Bootstrap support for Q5KEZ9 as seed ortholog is 100%.
Bootstrap support for D3B3L6 as seed ortholog is 100%.

Group of orthologs #960. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.pallidum:195

Q5KDH7              	100.00%		D3B8I4              	100.00%
Bootstrap support for Q5KDH7 as seed ortholog is 100%.
Bootstrap support for D3B8I4 as seed ortholog is 100%.

Group of orthologs #961. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.pallidum:195

Q5KA56              	100.00%		D3BJ85              	100.00%
Bootstrap support for Q5KA56 as seed ortholog is 100%.
Bootstrap support for D3BJ85 as seed ortholog is 100%.

Group of orthologs #962. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.pallidum:195

Q5KFT6              	100.00%		D3BE64              	100.00%
Bootstrap support for Q5KFT6 as seed ortholog is 100%.
Bootstrap support for D3BE64 as seed ortholog is 100%.

Group of orthologs #963. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:195

Q5KK15              	100.00%		D3BMK7              	100.00%
Bootstrap support for Q5KK15 as seed ortholog is 96%.
Bootstrap support for D3BMK7 as seed ortholog is 100%.

Group of orthologs #964. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.pallidum:195

Q5KI18              	100.00%		D3BUF1              	100.00%
Bootstrap support for Q5KI18 as seed ortholog is 100%.
Bootstrap support for D3BUF1 as seed ortholog is 100%.

Group of orthologs #965. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.pallidum:194

Q5KQ00              	100.00%		D3B2V4              	100.00%
                    	       		D3B7E7              	7.75%
                    	       		D3B6L6              	7.34%
                    	       		D3BE35              	5.57%
Bootstrap support for Q5KQ00 as seed ortholog is 100%.
Bootstrap support for D3B2V4 as seed ortholog is 100%.

Group of orthologs #966. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.pallidum:194

Q5KEB3              	100.00%		D3BEP4              	100.00%
Bootstrap support for Q5KEB3 as seed ortholog is 100%.
Bootstrap support for D3BEP4 as seed ortholog is 100%.

Group of orthologs #967. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.pallidum:193

Q5KP78              	100.00%		D3B0W4              	100.00%
Q5KP94              	41.59%		
Bootstrap support for Q5KP78 as seed ortholog is 100%.
Bootstrap support for D3B0W4 as seed ortholog is 100%.

Group of orthologs #968. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.pallidum:193

Q5KGT7              	100.00%		D3B7Q8              	100.00%
Q5K9Z3              	43.42%		
Bootstrap support for Q5KGT7 as seed ortholog is 100%.
Bootstrap support for D3B7Q8 as seed ortholog is 100%.

Group of orthologs #969. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:60

Q5KKK2              	100.00%		D3BNQ4              	100.00%
                    	       		D3B457              	10.94%
Bootstrap support for Q5KKK2 as seed ortholog is 93%.
Bootstrap support for D3BNQ4 as seed ortholog is 94%.

Group of orthologs #970. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.pallidum:193

P0CP98              	100.00%		D3BBG4              	100.00%
Bootstrap support for P0CP98 as seed ortholog is 100%.
Bootstrap support for D3BBG4 as seed ortholog is 100%.

Group of orthologs #971. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.pallidum:193

Q5KE33              	100.00%		D3B864              	100.00%
Bootstrap support for Q5KE33 as seed ortholog is 100%.
Bootstrap support for D3B864 as seed ortholog is 100%.

Group of orthologs #972. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.pallidum:141

Q5KN69              	100.00%		D3BCW0              	100.00%
Bootstrap support for Q5KN69 as seed ortholog is 100%.
Bootstrap support for D3BCW0 as seed ortholog is 99%.

Group of orthologs #973. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.pallidum:97

Q5K6W9              	100.00%		D3AYR4              	100.00%
Bootstrap support for Q5K6W9 as seed ortholog is 100%.
Bootstrap support for D3AYR4 as seed ortholog is 100%.

Group of orthologs #974. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.pallidum:192

Q5KB25              	100.00%		D3B5F4              	100.00%
Bootstrap support for Q5KB25 as seed ortholog is 100%.
Bootstrap support for D3B5F4 as seed ortholog is 100%.

Group of orthologs #975. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.pallidum:192

Q5KPB6              	100.00%		D3BAX6              	100.00%
Bootstrap support for Q5KPB6 as seed ortholog is 100%.
Bootstrap support for D3BAX6 as seed ortholog is 100%.

Group of orthologs #976. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.pallidum:46

Q5KAA5              	100.00%		D3AXZ1              	100.00%
                    	       		D3B650              	10.05%
                    	       		D3BLH1              	7.56%
                    	       		D3B3W3              	6.50%
Bootstrap support for Q5KAA5 as seed ortholog is 100%.
Bootstrap support for D3AXZ1 as seed ortholog is 93%.

Group of orthologs #977. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:151

P0CS40              	100.00%		D3AXI5              	100.00%
Bootstrap support for P0CS40 as seed ortholog is 99%.
Bootstrap support for D3AXI5 as seed ortholog is 99%.

Group of orthologs #978. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:34 P.pallidum:47

Q5K7V1              	100.00%		D3BBG2              	100.00%
Bootstrap support for Q5K7V1 as seed ortholog is 93%.
Bootstrap support for D3BBG2 as seed ortholog is 90%.

Group of orthologs #979. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.pallidum:146

Q5K6W1              	100.00%		D3B035              	100.00%
                    	       		D3BQR4              	54.04%
Bootstrap support for Q5K6W1 as seed ortholog is 100%.
Bootstrap support for D3B035 as seed ortholog is 99%.

Group of orthologs #980. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.pallidum:113

Q5KPC4              	100.00%		D3AYY9              	100.00%
Bootstrap support for Q5KPC4 as seed ortholog is 89%.
Bootstrap support for D3AYY9 as seed ortholog is 99%.

Group of orthologs #981. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:190

Q5KDT8              	100.00%		D3BI80              	100.00%
Bootstrap support for Q5KDT8 as seed ortholog is 99%.
Bootstrap support for D3BI80 as seed ortholog is 100%.

Group of orthologs #982. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:190

Q5K959              	100.00%		D3BMX5              	100.00%
Bootstrap support for Q5K959 as seed ortholog is 100%.
Bootstrap support for D3BMX5 as seed ortholog is 100%.

Group of orthologs #983. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.pallidum:190

Q5KCI0              	100.00%		D3BM88              	100.00%
Bootstrap support for Q5KCI0 as seed ortholog is 100%.
Bootstrap support for D3BM88 as seed ortholog is 100%.

Group of orthologs #984. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.pallidum:190

Q5KKH3              	100.00%		D3BSM2              	100.00%
Bootstrap support for Q5KKH3 as seed ortholog is 100%.
Bootstrap support for D3BSM2 as seed ortholog is 100%.

Group of orthologs #985. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:127

Q5K762              	100.00%		D3B081              	100.00%
Bootstrap support for Q5K762 as seed ortholog is 99%.
Bootstrap support for D3B081 as seed ortholog is 99%.

Group of orthologs #986. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.pallidum:189

Q5KAJ9              	100.00%		D3BGD8              	100.00%
Bootstrap support for Q5KAJ9 as seed ortholog is 100%.
Bootstrap support for D3BGD8 as seed ortholog is 100%.

Group of orthologs #987. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.pallidum:189

Q5KKJ2              	100.00%		D3BCJ7              	100.00%
Bootstrap support for Q5KKJ2 as seed ortholog is 98%.
Bootstrap support for D3BCJ7 as seed ortholog is 100%.

Group of orthologs #988. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.pallidum:23

Q5KK01              	100.00%		D3BED2              	100.00%
Bootstrap support for Q5KK01 as seed ortholog is 92%.
Bootstrap support for D3BED2 as seed ortholog is 75%.

Group of orthologs #989. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.pallidum:189

Q5KPD2              	100.00%		D3BS22              	100.00%
Bootstrap support for Q5KPD2 as seed ortholog is 100%.
Bootstrap support for D3BS22 as seed ortholog is 100%.

Group of orthologs #990. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.pallidum:188

Q5KEY5              	100.00%		D3BCD0              	100.00%
Q5K9E7              	9.61%		D3BB25              	5.10%
Bootstrap support for Q5KEY5 as seed ortholog is 96%.
Bootstrap support for D3BCD0 as seed ortholog is 100%.

Group of orthologs #991. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:71

Q5KEP5              	100.00%		D3BHG8              	100.00%
                    	       		D3BS60              	5.62%
Bootstrap support for Q5KEP5 as seed ortholog is 100%.
Bootstrap support for D3BHG8 as seed ortholog is 94%.

Group of orthologs #992. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:188

P0CN78              	100.00%		D3B010              	100.00%
Bootstrap support for P0CN78 as seed ortholog is 100%.
Bootstrap support for D3B010 as seed ortholog is 100%.

Group of orthologs #993. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:188

Q5KIB2              	100.00%		D3B763              	100.00%
Bootstrap support for Q5KIB2 as seed ortholog is 100%.
Bootstrap support for D3B763 as seed ortholog is 100%.

Group of orthologs #994. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:188

Q5K9Y4              	100.00%		D3BK06              	100.00%
Bootstrap support for Q5K9Y4 as seed ortholog is 100%.
Bootstrap support for D3BK06 as seed ortholog is 100%.

Group of orthologs #995. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:188

Q5K850              	100.00%		D3BN80              	100.00%
Bootstrap support for Q5K850 as seed ortholog is 100%.
Bootstrap support for D3BN80 as seed ortholog is 100%.

Group of orthologs #996. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:188

Q5KH76              	100.00%		D3BUX6              	100.00%
Bootstrap support for Q5KH76 as seed ortholog is 100%.
Bootstrap support for D3BUX6 as seed ortholog is 100%.

Group of orthologs #997. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.pallidum:188

Q5KLK0              	100.00%		D3BSZ4              	100.00%
Bootstrap support for Q5KLK0 as seed ortholog is 100%.
Bootstrap support for D3BSZ4 as seed ortholog is 100%.

Group of orthologs #998. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:97

Q5K938              	100.00%		D3B6L1              	100.00%
Q5KPI4              	6.42%		
Bootstrap support for Q5K938 as seed ortholog is 100%.
Bootstrap support for D3B6L1 as seed ortholog is 99%.

Group of orthologs #999. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5KND4              	100.00%		D3B454              	100.00%
Bootstrap support for Q5KND4 as seed ortholog is 100%.
Bootstrap support for D3B454 as seed ortholog is 100%.

Group of orthologs #1000. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:37

Q5KN16              	100.00%		D3B7B4              	100.00%
Bootstrap support for Q5KN16 as seed ortholog is 100%.
Bootstrap support for D3B7B4 as seed ortholog is 90%.

Group of orthologs #1001. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5KJG1              	100.00%		D3BB37              	100.00%
Bootstrap support for Q5KJG1 as seed ortholog is 100%.
Bootstrap support for D3BB37 as seed ortholog is 100%.

Group of orthologs #1002. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5KGH4              	100.00%		D3BE20              	100.00%
Bootstrap support for Q5KGH4 as seed ortholog is 100%.
Bootstrap support for D3BE20 as seed ortholog is 100%.

Group of orthologs #1003. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5K7Y2              	100.00%		D3BSY5              	100.00%
Bootstrap support for Q5K7Y2 as seed ortholog is 100%.
Bootstrap support for D3BSY5 as seed ortholog is 100%.

Group of orthologs #1004. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5KPF3              	100.00%		D3BEM8              	100.00%
Bootstrap support for Q5KPF3 as seed ortholog is 100%.
Bootstrap support for D3BEM8 as seed ortholog is 100%.

Group of orthologs #1005. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5KF53              	100.00%		D3BTZ3              	100.00%
Bootstrap support for Q5KF53 as seed ortholog is 100%.
Bootstrap support for D3BTZ3 as seed ortholog is 100%.

Group of orthologs #1006. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.pallidum:187

Q5KQ96              	100.00%		D3BSY9              	100.00%
Bootstrap support for Q5KQ96 as seed ortholog is 100%.
Bootstrap support for D3BSY9 as seed ortholog is 100%.

Group of orthologs #1007. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.pallidum:186

P0CP34              	100.00%		D3AYA3              	100.00%
Bootstrap support for P0CP34 as seed ortholog is 100%.
Bootstrap support for D3AYA3 as seed ortholog is 100%.

Group of orthologs #1008. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.pallidum:186

Q5KEW0              	100.00%		D3B062              	100.00%
Bootstrap support for Q5KEW0 as seed ortholog is 100%.
Bootstrap support for D3B062 as seed ortholog is 100%.

Group of orthologs #1009. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:47

Q5KI63              	100.00%		D3B436              	100.00%
Bootstrap support for Q5KI63 as seed ortholog is 97%.
Bootstrap support for D3B436 as seed ortholog is 85%.

Group of orthologs #1010. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.pallidum:186

Q5KJ55              	100.00%		D3B7C4              	100.00%
Bootstrap support for Q5KJ55 as seed ortholog is 100%.
Bootstrap support for D3B7C4 as seed ortholog is 100%.

Group of orthologs #1011. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.pallidum:186

Q5KGM8              	100.00%		D3BH46              	100.00%
Bootstrap support for Q5KGM8 as seed ortholog is 100%.
Bootstrap support for D3BH46 as seed ortholog is 100%.

Group of orthologs #1012. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.pallidum:134

P0CS30              	100.00%		D3BTD3              	100.00%
Bootstrap support for P0CS30 as seed ortholog is 93%.
Bootstrap support for D3BTD3 as seed ortholog is 99%.

Group of orthologs #1013. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.pallidum:186

Q5KF20              	100.00%		D3BML2              	100.00%
Bootstrap support for Q5KF20 as seed ortholog is 100%.
Bootstrap support for D3BML2 as seed ortholog is 100%.

Group of orthologs #1014. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.pallidum:65

Q5KJD1              	100.00%		D3BR25              	100.00%
Bootstrap support for Q5KJD1 as seed ortholog is 87%.
Bootstrap support for D3BR25 as seed ortholog is 89%.

Group of orthologs #1015. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.pallidum:186

Q5KGP0              	100.00%		D3BTW3              	100.00%
Bootstrap support for Q5KGP0 as seed ortholog is 100%.
Bootstrap support for D3BTW3 as seed ortholog is 100%.

Group of orthologs #1016. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:185

Q5KA58              	100.00%		D3BRF5              	100.00%
                    	       		D3BMM2              	26.53%
                    	       		D3BQG0              	17.31%
                    	       		D3BAN4              	6.10%
Bootstrap support for Q5KA58 as seed ortholog is 91%.
Bootstrap support for D3BRF5 as seed ortholog is 100%.

Group of orthologs #1017. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:185

Q5KGQ0              	100.00%		D3B2L6              	100.00%
Bootstrap support for Q5KGQ0 as seed ortholog is 99%.
Bootstrap support for D3B2L6 as seed ortholog is 100%.

Group of orthologs #1018. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.pallidum:185

Q5K9Z8              	100.00%		D3BFU9              	100.00%
Bootstrap support for Q5K9Z8 as seed ortholog is 100%.
Bootstrap support for D3BFU9 as seed ortholog is 100%.

Group of orthologs #1019. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:84

Q5KGB5              	100.00%		D3BAL9              	100.00%
Bootstrap support for Q5KGB5 as seed ortholog is 99%.
Bootstrap support for D3BAL9 as seed ortholog is 99%.

Group of orthologs #1020. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:185

Q5KPW9              	100.00%		D3B3S8              	100.00%
Bootstrap support for Q5KPW9 as seed ortholog is 100%.
Bootstrap support for D3B3S8 as seed ortholog is 100%.

Group of orthologs #1021. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.pallidum:185

Q5KG83              	100.00%		D3BCC1              	100.00%
Bootstrap support for Q5KG83 as seed ortholog is 100%.
Bootstrap support for D3BCC1 as seed ortholog is 100%.

Group of orthologs #1022. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.pallidum:185

P0CR70              	100.00%		D3BSU4              	100.00%
Bootstrap support for P0CR70 as seed ortholog is 100%.
Bootstrap support for D3BSU4 as seed ortholog is 100%.

Group of orthologs #1023. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.pallidum:185

Q5KQ70              	100.00%		D3BMQ1              	100.00%
Bootstrap support for Q5KQ70 as seed ortholog is 100%.
Bootstrap support for D3BMQ1 as seed ortholog is 100%.

Group of orthologs #1024. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:137

Q5K8F4              	100.00%		D3BH26              	100.00%
                    	       		D3BL05              	16.64%
Bootstrap support for Q5K8F4 as seed ortholog is 98%.
Bootstrap support for D3BH26 as seed ortholog is 99%.

Group of orthologs #1025. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.pallidum:184

Q5KBW6              	100.00%		D3B963              	100.00%
Bootstrap support for Q5KBW6 as seed ortholog is 100%.
Bootstrap support for D3B963 as seed ortholog is 100%.

Group of orthologs #1026. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.pallidum:184

Q5KCX5              	100.00%		D3BL35              	100.00%
Bootstrap support for Q5KCX5 as seed ortholog is 100%.
Bootstrap support for D3BL35 as seed ortholog is 100%.

Group of orthologs #1027. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.pallidum:133

Q5K9G2              	100.00%		D3BSS7              	100.00%
Bootstrap support for Q5K9G2 as seed ortholog is 100%.
Bootstrap support for D3BSS7 as seed ortholog is 99%.

Group of orthologs #1028. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.pallidum:184

Q5KFF3              	100.00%		D3BMU1              	100.00%
Bootstrap support for Q5KFF3 as seed ortholog is 100%.
Bootstrap support for D3BMU1 as seed ortholog is 100%.

Group of orthologs #1029. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.pallidum:183

Q5K6U9              	100.00%		D3B227              	100.00%
Bootstrap support for Q5K6U9 as seed ortholog is 100%.
Bootstrap support for D3B227 as seed ortholog is 100%.

Group of orthologs #1030. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.pallidum:183

Q5KGQ8              	100.00%		D3AXK2              	100.00%
Bootstrap support for Q5KGQ8 as seed ortholog is 100%.
Bootstrap support for D3AXK2 as seed ortholog is 100%.

Group of orthologs #1031. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.pallidum:132

Q5KIX3              	100.00%		D3AWT6              	100.00%
Bootstrap support for Q5KIX3 as seed ortholog is 79%.
Bootstrap support for D3AWT6 as seed ortholog is 99%.

Group of orthologs #1032. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.pallidum:183

Q5KEF6              	100.00%		D3BNL3              	100.00%
Bootstrap support for Q5KEF6 as seed ortholog is 100%.
Bootstrap support for D3BNL3 as seed ortholog is 100%.

Group of orthologs #1033. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.pallidum:183

Q5KA59              	100.00%		D3BUH6              	100.00%
Bootstrap support for Q5KA59 as seed ortholog is 100%.
Bootstrap support for D3BUH6 as seed ortholog is 100%.

Group of orthologs #1034. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:183

Q5KJ08              	100.00%		D3BP95              	100.00%
Bootstrap support for Q5KJ08 as seed ortholog is 99%.
Bootstrap support for D3BP95 as seed ortholog is 100%.

Group of orthologs #1035. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:100

Q5KJT3              	100.00%		D3BHG1              	100.00%
Q5KML8              	11.22%		
Bootstrap support for Q5KJT3 as seed ortholog is 99%.
Bootstrap support for D3BHG1 as seed ortholog is 99%.

Group of orthologs #1036. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.pallidum:182

Q5K7I5              	100.00%		D3B4A0              	100.00%
Bootstrap support for Q5K7I5 as seed ortholog is 100%.
Bootstrap support for D3B4A0 as seed ortholog is 100%.

Group of orthologs #1037. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.pallidum:51

P0CM54              	100.00%		D3BCG7              	100.00%
Bootstrap support for P0CM54 as seed ortholog is 100%.
Bootstrap support for D3BCG7 as seed ortholog is 99%.

Group of orthologs #1038. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.pallidum:114

Q5KJB4              	100.00%		D3B9J8              	100.00%
Bootstrap support for Q5KJB4 as seed ortholog is 100%.
Bootstrap support for D3B9J8 as seed ortholog is 95%.

Group of orthologs #1039. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.pallidum:181

Q5K9I8              	100.00%		D3BT94              	100.00%
                    	       		D3BT74              	90.75%
                    	       		D3BM71              	34.50%
                    	       		D3B665              	33.50%
                    	       		D3AY26              	15.50%
Bootstrap support for Q5K9I8 as seed ortholog is 100%.
Bootstrap support for D3BT94 as seed ortholog is 100%.

Group of orthologs #1040. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.pallidum:181

Q5KCL9              	100.00%		D3BUW3              	100.00%
Bootstrap support for Q5KCL9 as seed ortholog is 100%.
Bootstrap support for D3BUW3 as seed ortholog is 100%.

Group of orthologs #1041. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:180

Q5KPW8              	100.00%		D3BNJ4              	100.00%
                    	       		D3AW98              	28.81%
Bootstrap support for Q5KPW8 as seed ortholog is 99%.
Bootstrap support for D3BNJ4 as seed ortholog is 100%.

Group of orthologs #1042. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:23

P0CM92              	100.00%		D3AYE3              	100.00%
Bootstrap support for P0CM92 as seed ortholog is 100%.
Bootstrap support for D3AYE3 as seed ortholog is 48%.
Alternative seed ortholog is D3AYW6 (23 bits away from this cluster)

Group of orthologs #1043. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:15

Q5KD56              	100.00%		D3AZJ0              	100.00%
Bootstrap support for Q5KD56 as seed ortholog is 98%.
Bootstrap support for D3AZJ0 as seed ortholog is 61%.
Alternative seed ortholog is D3BTM6 (15 bits away from this cluster)

Group of orthologs #1044. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:180

Q5KHA2              	100.00%		D3AVU9              	100.00%
Bootstrap support for Q5KHA2 as seed ortholog is 100%.
Bootstrap support for D3AVU9 as seed ortholog is 100%.

Group of orthologs #1045. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:180

Q5KIW7              	100.00%		D3AVW2              	100.00%
Bootstrap support for Q5KIW7 as seed ortholog is 100%.
Bootstrap support for D3AVW2 as seed ortholog is 100%.

Group of orthologs #1046. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:180

Q5KFP2              	100.00%		D3B0F6              	100.00%
Bootstrap support for Q5KFP2 as seed ortholog is 100%.
Bootstrap support for D3B0F6 as seed ortholog is 100%.

Group of orthologs #1047. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:17

Q5KG73              	100.00%		D3B2S7              	100.00%
Bootstrap support for Q5KG73 as seed ortholog is 100%.
Bootstrap support for D3B2S7 as seed ortholog is 66%.
Alternative seed ortholog is D3B7E4 (17 bits away from this cluster)

Group of orthologs #1048. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.pallidum:180

Q5KLP8              	100.00%		D3AZX6              	100.00%
Bootstrap support for Q5KLP8 as seed ortholog is 99%.
Bootstrap support for D3AZX6 as seed ortholog is 100%.

Group of orthologs #1049. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:180

Q5KNH3              	100.00%		D3B954              	100.00%
Bootstrap support for Q5KNH3 as seed ortholog is 100%.
Bootstrap support for D3B954 as seed ortholog is 100%.

Group of orthologs #1050. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:99

Q5KNN5              	100.00%		D3BFY9              	100.00%
Bootstrap support for Q5KNN5 as seed ortholog is 100%.
Bootstrap support for D3BFY9 as seed ortholog is 99%.

Group of orthologs #1051. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.pallidum:180

Q5KKX2              	100.00%		D3BLV0              	100.00%
Bootstrap support for Q5KKX2 as seed ortholog is 100%.
Bootstrap support for D3BLV0 as seed ortholog is 100%.

Group of orthologs #1052. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.pallidum:179

Q5K7W8              	100.00%		D3AW01              	100.00%
Bootstrap support for Q5K7W8 as seed ortholog is 100%.
Bootstrap support for D3AW01 as seed ortholog is 100%.

Group of orthologs #1053. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.pallidum:113

Q5KG23              	100.00%		D3B439              	100.00%
Bootstrap support for Q5KG23 as seed ortholog is 100%.
Bootstrap support for D3B439 as seed ortholog is 100%.

Group of orthologs #1054. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.pallidum:179

Q5KH09              	100.00%		D3B9I5              	100.00%
Bootstrap support for Q5KH09 as seed ortholog is 100%.
Bootstrap support for D3B9I5 as seed ortholog is 100%.

Group of orthologs #1055. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.pallidum:90

Q5KFG5              	100.00%		D3BHT9              	100.00%
Bootstrap support for Q5KFG5 as seed ortholog is 98%.
Bootstrap support for D3BHT9 as seed ortholog is 99%.

Group of orthologs #1056. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

Q5KEQ7              	100.00%		D3AWU6              	100.00%
Q5KM31              	38.00%		
Q5KM49              	8.17%		
Bootstrap support for Q5KEQ7 as seed ortholog is 100%.
Bootstrap support for D3AWU6 as seed ortholog is 100%.

Group of orthologs #1057. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

Q5KBW8              	100.00%		D3AWH8              	100.00%
Bootstrap support for Q5KBW8 as seed ortholog is 100%.
Bootstrap support for D3AWH8 as seed ortholog is 100%.

Group of orthologs #1058. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

Q5K974              	100.00%		D3AZF9              	100.00%
Bootstrap support for Q5K974 as seed ortholog is 100%.
Bootstrap support for D3AZF9 as seed ortholog is 100%.

Group of orthologs #1059. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

P0CR48              	100.00%		D3B4Y2              	100.00%
Bootstrap support for P0CR48 as seed ortholog is 100%.
Bootstrap support for D3B4Y2 as seed ortholog is 100%.

Group of orthologs #1060. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

Q5KNH2              	100.00%		D3AW89              	100.00%
Bootstrap support for Q5KNH2 as seed ortholog is 100%.
Bootstrap support for D3AW89 as seed ortholog is 100%.

Group of orthologs #1061. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

Q5KAJ6              	100.00%		D3BI13              	100.00%
Bootstrap support for Q5KAJ6 as seed ortholog is 100%.
Bootstrap support for D3BI13 as seed ortholog is 100%.

Group of orthologs #1062. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.pallidum:178

Q5KGJ0              	100.00%		D3BJB8              	100.00%
Bootstrap support for Q5KGJ0 as seed ortholog is 100%.
Bootstrap support for D3BJB8 as seed ortholog is 100%.

Group of orthologs #1063. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.pallidum:177

Q5KFJ2              	100.00%		D3AWA6              	100.00%
Bootstrap support for Q5KFJ2 as seed ortholog is 100%.
Bootstrap support for D3AWA6 as seed ortholog is 100%.

Group of orthologs #1064. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.pallidum:177

Q5K9K8              	100.00%		D3BC29              	100.00%
Bootstrap support for Q5K9K8 as seed ortholog is 100%.
Bootstrap support for D3BC29 as seed ortholog is 100%.

Group of orthologs #1065. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.pallidum:177

Q5KBT3              	100.00%		D3BHL7              	100.00%
Bootstrap support for Q5KBT3 as seed ortholog is 100%.
Bootstrap support for D3BHL7 as seed ortholog is 100%.

Group of orthologs #1066. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5KDF8              	100.00%		D3B0Y0              	100.00%
Bootstrap support for Q5KDF8 as seed ortholog is 100%.
Bootstrap support for D3B0Y0 as seed ortholog is 100%.

Group of orthologs #1067. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5K741              	100.00%		D3B7P9              	100.00%
Bootstrap support for Q5K741 as seed ortholog is 100%.
Bootstrap support for D3B7P9 as seed ortholog is 100%.

Group of orthologs #1068. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5KG39              	100.00%		D3B3C2              	100.00%
Bootstrap support for Q5KG39 as seed ortholog is 100%.
Bootstrap support for D3B3C2 as seed ortholog is 100%.

Group of orthologs #1069. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5KE88              	100.00%		D3B9F1              	100.00%
Bootstrap support for Q5KE88 as seed ortholog is 100%.
Bootstrap support for D3B9F1 as seed ortholog is 100%.

Group of orthologs #1070. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:176

Q5KCQ4              	100.00%		D3BAT4              	100.00%
Bootstrap support for Q5KCQ4 as seed ortholog is 96%.
Bootstrap support for D3BAT4 as seed ortholog is 100%.

Group of orthologs #1071. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5KKV3              	100.00%		D3B4F5              	100.00%
Bootstrap support for Q5KKV3 as seed ortholog is 100%.
Bootstrap support for D3B4F5 as seed ortholog is 100%.

Group of orthologs #1072. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:92

Q5KCE0              	100.00%		D3BCJ1              	100.00%
Bootstrap support for Q5KCE0 as seed ortholog is 100%.
Bootstrap support for D3BCJ1 as seed ortholog is 99%.

Group of orthologs #1073. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5KKD1              	100.00%		D3BEW0              	100.00%
Bootstrap support for Q5KKD1 as seed ortholog is 100%.
Bootstrap support for D3BEW0 as seed ortholog is 100%.

Group of orthologs #1074. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.pallidum:176

Q5KJN1              	100.00%		D3BTV0              	100.00%
Bootstrap support for Q5KJN1 as seed ortholog is 100%.
Bootstrap support for D3BTV0 as seed ortholog is 100%.

Group of orthologs #1075. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.pallidum:175

Q5KGF3              	100.00%		D3AYL4              	100.00%
Bootstrap support for Q5KGF3 as seed ortholog is 100%.
Bootstrap support for D3AYL4 as seed ortholog is 100%.

Group of orthologs #1076. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:23 P.pallidum:175

Q5KIX8              	100.00%		D3B2D5              	100.00%
Bootstrap support for Q5KIX8 as seed ortholog is 65%.
Alternative seed ortholog is Q5KPN4 (23 bits away from this cluster)
Bootstrap support for D3B2D5 as seed ortholog is 100%.

Group of orthologs #1077. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.pallidum:175

Q5KDK4              	100.00%		D3BQ33              	100.00%
Bootstrap support for Q5KDK4 as seed ortholog is 100%.
Bootstrap support for D3BQ33 as seed ortholog is 100%.

Group of orthologs #1078. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.pallidum:175

Q5KM68              	100.00%		D3BHJ3              	100.00%
Bootstrap support for Q5KM68 as seed ortholog is 100%.
Bootstrap support for D3BHJ3 as seed ortholog is 100%.

Group of orthologs #1079. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.pallidum:115

Q5KN90              	100.00%		D3B5N8              	100.00%
Q5KN24              	51.71%		
Bootstrap support for Q5KN90 as seed ortholog is 100%.
Bootstrap support for D3B5N8 as seed ortholog is 98%.

Group of orthologs #1080. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.pallidum:174

P0CQ02              	100.00%		D3B586              	100.00%
Bootstrap support for P0CQ02 as seed ortholog is 100%.
Bootstrap support for D3B586 as seed ortholog is 100%.

Group of orthologs #1081. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.pallidum:174

Q5KKH6              	100.00%		D3AVH8              	100.00%
Bootstrap support for Q5KKH6 as seed ortholog is 100%.
Bootstrap support for D3AVH8 as seed ortholog is 100%.

Group of orthologs #1082. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.pallidum:174

Q5K844              	100.00%		D3BT21              	100.00%
Bootstrap support for Q5K844 as seed ortholog is 100%.
Bootstrap support for D3BT21 as seed ortholog is 100%.

Group of orthologs #1083. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:4

Q5KJM5              	100.00%		D3BQG3              	100.00%
                    	       		D3BT40              	49.41%
Bootstrap support for Q5KJM5 as seed ortholog is 100%.
Bootstrap support for D3BQG3 as seed ortholog is 86%.

Group of orthologs #1084. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:173

Q5KFI9              	100.00%		D3AWU5              	100.00%
Bootstrap support for Q5KFI9 as seed ortholog is 100%.
Bootstrap support for D3AWU5 as seed ortholog is 100%.

Group of orthologs #1085. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:173

Q5KP07              	100.00%		D3B1A8              	100.00%
Bootstrap support for Q5KP07 as seed ortholog is 100%.
Bootstrap support for D3B1A8 as seed ortholog is 100%.

Group of orthologs #1086. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:74

Q5KI70              	100.00%		D3B9K9              	100.00%
Bootstrap support for Q5KI70 as seed ortholog is 99%.
Bootstrap support for D3B9K9 as seed ortholog is 99%.

Group of orthologs #1087. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:173

Q5KGZ7              	100.00%		D3BLZ9              	100.00%
Bootstrap support for Q5KGZ7 as seed ortholog is 100%.
Bootstrap support for D3BLZ9 as seed ortholog is 100%.

Group of orthologs #1088. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:173

Q5KJ94              	100.00%		D3BMQ2              	100.00%
Bootstrap support for Q5KJ94 as seed ortholog is 100%.
Bootstrap support for D3BMQ2 as seed ortholog is 100%.

Group of orthologs #1089. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:173

Q5KLH8              	100.00%		D3BKX3              	100.00%
Bootstrap support for Q5KLH8 as seed ortholog is 100%.
Bootstrap support for D3BKX3 as seed ortholog is 100%.

Group of orthologs #1090. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.pallidum:173

Q5KI08              	100.00%		D3BRL5              	100.00%
Bootstrap support for Q5KI08 as seed ortholog is 100%.
Bootstrap support for D3BRL5 as seed ortholog is 100%.

Group of orthologs #1091. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.pallidum:172

Q5KM85              	100.00%		D3BKZ9              	100.00%
                    	       		D3BGC6              	12.41%
Bootstrap support for Q5KM85 as seed ortholog is 100%.
Bootstrap support for D3BKZ9 as seed ortholog is 100%.

Group of orthologs #1092. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.pallidum:172

Q5KCI8              	100.00%		D3B6S2              	100.00%
Bootstrap support for Q5KCI8 as seed ortholog is 100%.
Bootstrap support for D3B6S2 as seed ortholog is 100%.

Group of orthologs #1093. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:11

Q5K7Q6              	100.00%		D3B0Y3              	100.00%
                    	       		D3B2R8              	5.37%
Bootstrap support for Q5K7Q6 as seed ortholog is 100%.
Bootstrap support for D3B0Y3 as seed ortholog is 45%.
Alternative seed ortholog is D3BPS2 (11 bits away from this cluster)

Group of orthologs #1094. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:13 P.pallidum:114

Q5KGR6              	100.00%		D3BJU6              	100.00%
                    	       		D3BL27              	7.46%
Bootstrap support for Q5KGR6 as seed ortholog is 81%.
Bootstrap support for D3BJU6 as seed ortholog is 100%.

Group of orthologs #1095. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:171

Q5K9K2              	100.00%		D3B9C7              	100.00%
Bootstrap support for Q5K9K2 as seed ortholog is 100%.
Bootstrap support for D3B9C7 as seed ortholog is 100%.

Group of orthologs #1096. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:171

Q5K710              	100.00%		D3BC43              	100.00%
Bootstrap support for Q5K710 as seed ortholog is 100%.
Bootstrap support for D3BC43 as seed ortholog is 100%.

Group of orthologs #1097. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:171

Q5KCY7              	100.00%		D3B7M3              	100.00%
Bootstrap support for Q5KCY7 as seed ortholog is 100%.
Bootstrap support for D3B7M3 as seed ortholog is 100%.

Group of orthologs #1098. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:171

Q5KQ87              	100.00%		D3AYZ5              	100.00%
Bootstrap support for Q5KQ87 as seed ortholog is 100%.
Bootstrap support for D3AYZ5 as seed ortholog is 100%.

Group of orthologs #1099. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:171

Q5K6Z0              	100.00%		D3BQU5              	100.00%
Bootstrap support for Q5K6Z0 as seed ortholog is 100%.
Bootstrap support for D3BQU5 as seed ortholog is 100%.

Group of orthologs #1100. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:171

Q5K8A2              	100.00%		D3BUL6              	100.00%
Bootstrap support for Q5K8A2 as seed ortholog is 100%.
Bootstrap support for D3BUL6 as seed ortholog is 100%.

Group of orthologs #1101. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.pallidum:106

Q5KIL7              	100.00%		D3BU79              	100.00%
Bootstrap support for Q5KIL7 as seed ortholog is 100%.
Bootstrap support for D3BU79 as seed ortholog is 99%.

Group of orthologs #1102. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.pallidum:170

Q5K9M8              	100.00%		D3B961              	100.00%
Bootstrap support for Q5K9M8 as seed ortholog is 100%.
Bootstrap support for D3B961 as seed ortholog is 100%.

Group of orthologs #1103. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.pallidum:170

Q5KHF6              	100.00%		D3B748              	100.00%
Bootstrap support for Q5KHF6 as seed ortholog is 100%.
Bootstrap support for D3B748 as seed ortholog is 100%.

Group of orthologs #1104. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.pallidum:170

Q5KMG9              	100.00%		D3B734              	100.00%
Bootstrap support for Q5KMG9 as seed ortholog is 100%.
Bootstrap support for D3B734 as seed ortholog is 100%.

Group of orthologs #1105. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.pallidum:169

P0CP64              	100.00%		D3BRK8              	100.00%
Bootstrap support for P0CP64 as seed ortholog is 100%.
Bootstrap support for D3BRK8 as seed ortholog is 100%.

Group of orthologs #1106. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.pallidum:169

Q5KJJ9              	100.00%		D3BTP4              	100.00%
Bootstrap support for Q5KJJ9 as seed ortholog is 100%.
Bootstrap support for D3BTP4 as seed ortholog is 100%.

Group of orthologs #1107. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:7 P.pallidum:106

Q5KF98              	100.00%		D3BG57              	100.00%
Q5K815              	100.00%		D3BV73              	100.00%
                    	       		D3B8N8              	48.54%
Bootstrap support for Q5KF98 as seed ortholog is 65%.
Alternative seed ortholog is Q5KHA5 (7 bits away from this cluster)
Bootstrap support for Q5K815 as seed ortholog is 42%.
Alternative seed ortholog is Q5KHA5 (7 bits away from this cluster)
Bootstrap support for D3BG57 as seed ortholog is 99%.
Bootstrap support for D3BV73 as seed ortholog is 98%.

Group of orthologs #1108. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.pallidum:56

P0CP32              	100.00%		D3B1Z1              	100.00%
Bootstrap support for P0CP32 as seed ortholog is 100%.
Bootstrap support for D3B1Z1 as seed ortholog is 87%.

Group of orthologs #1109. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.pallidum:168

Q5KCE5              	100.00%		D3B513              	100.00%
Bootstrap support for Q5KCE5 as seed ortholog is 100%.
Bootstrap support for D3B513 as seed ortholog is 100%.

Group of orthologs #1110. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.pallidum:168

Q5KBQ8              	100.00%		D3B6N9              	100.00%
Bootstrap support for Q5KBQ8 as seed ortholog is 100%.
Bootstrap support for D3B6N9 as seed ortholog is 100%.

Group of orthologs #1111. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.pallidum:57

Q5KGN1              	100.00%		D3BQ39              	100.00%
Bootstrap support for Q5KGN1 as seed ortholog is 99%.
Bootstrap support for D3BQ39 as seed ortholog is 97%.

Group of orthologs #1112. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.pallidum:168

Q5KDK1              	100.00%		D3BU16              	100.00%
Bootstrap support for Q5KDK1 as seed ortholog is 100%.
Bootstrap support for D3BU16 as seed ortholog is 100%.

Group of orthologs #1113. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.pallidum:168

Q5KJ89              	100.00%		D3BSJ2              	100.00%
Bootstrap support for Q5KJ89 as seed ortholog is 100%.
Bootstrap support for D3BSJ2 as seed ortholog is 100%.

Group of orthologs #1114. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:167

Q5K9S4              	100.00%		D3AZU6              	100.00%
Bootstrap support for Q5K9S4 as seed ortholog is 100%.
Bootstrap support for D3AZU6 as seed ortholog is 100%.

Group of orthologs #1115. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:167

Q5KK13              	100.00%		D3B3D8              	100.00%
Bootstrap support for Q5KK13 as seed ortholog is 100%.
Bootstrap support for D3B3D8 as seed ortholog is 100%.

Group of orthologs #1116. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:167

Q5KQ30              	100.00%		D3B1J6              	100.00%
Bootstrap support for Q5KQ30 as seed ortholog is 100%.
Bootstrap support for D3B1J6 as seed ortholog is 100%.

Group of orthologs #1117. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:167

Q5KEC3              	100.00%		D3BCE5              	100.00%
Bootstrap support for Q5KEC3 as seed ortholog is 100%.
Bootstrap support for D3BCE5 as seed ortholog is 100%.

Group of orthologs #1118. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:167

Q5K7B1              	100.00%		D3BM80              	100.00%
Bootstrap support for Q5K7B1 as seed ortholog is 99%.
Bootstrap support for D3BM80 as seed ortholog is 100%.

Group of orthologs #1119. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:167

Q5KAB6              	100.00%		D3BKV9              	100.00%
Bootstrap support for Q5KAB6 as seed ortholog is 100%.
Bootstrap support for D3BKV9 as seed ortholog is 100%.

Group of orthologs #1120. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.pallidum:167

Q5KGV6              	100.00%		D3BP59              	100.00%
Bootstrap support for Q5KGV6 as seed ortholog is 100%.
Bootstrap support for D3BP59 as seed ortholog is 100%.

Group of orthologs #1121. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.pallidum:166

Q5K8L4              	100.00%		D3BMU4              	100.00%
Bootstrap support for Q5K8L4 as seed ortholog is 100%.
Bootstrap support for D3BMU4 as seed ortholog is 100%.

Group of orthologs #1122. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.pallidum:166

Q5KB61              	100.00%		D3BQA1              	100.00%
Bootstrap support for Q5KB61 as seed ortholog is 100%.
Bootstrap support for D3BQA1 as seed ortholog is 100%.

Group of orthologs #1123. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:165

P0CL86              	100.00%		D3B432              	100.00%
Bootstrap support for P0CL86 as seed ortholog is 100%.
Bootstrap support for D3B432 as seed ortholog is 100%.

Group of orthologs #1124. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:165

Q5KKW1              	100.00%		D3AY69              	100.00%
Bootstrap support for Q5KKW1 as seed ortholog is 100%.
Bootstrap support for D3AY69 as seed ortholog is 100%.

Group of orthologs #1125. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:165

P0CR92              	100.00%		D3BEF2              	100.00%
Bootstrap support for P0CR92 as seed ortholog is 100%.
Bootstrap support for D3BEF2 as seed ortholog is 100%.

Group of orthologs #1126. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:165

Q5KIJ7              	100.00%		D3B3Q6              	100.00%
Bootstrap support for Q5KIJ7 as seed ortholog is 100%.
Bootstrap support for D3B3Q6 as seed ortholog is 100%.

Group of orthologs #1127. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:47

P0CO54              	100.00%		D3BH99              	100.00%
Bootstrap support for P0CO54 as seed ortholog is 100%.
Bootstrap support for D3BH99 as seed ortholog is 98%.

Group of orthologs #1128. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:165

Q5KJL8              	100.00%		D3BPW1              	100.00%
Bootstrap support for Q5KJL8 as seed ortholog is 100%.
Bootstrap support for D3BPW1 as seed ortholog is 100%.

Group of orthologs #1129. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.pallidum:81

Q5KNJ6              	100.00%		D3BNE2              	100.00%
Bootstrap support for Q5KNJ6 as seed ortholog is 100%.
Bootstrap support for D3BNE2 as seed ortholog is 99%.

Group of orthologs #1130. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.pallidum:164

Q5KJX7              	100.00%		D3B9K4              	100.00%
Q5KIW0              	15.68%		D3B9J7              	37.70%
Bootstrap support for Q5KJX7 as seed ortholog is 100%.
Bootstrap support for D3B9K4 as seed ortholog is 100%.

Group of orthologs #1131. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.pallidum:164

Q5K8I0              	100.00%		D3B0P9              	100.00%
Bootstrap support for Q5K8I0 as seed ortholog is 100%.
Bootstrap support for D3B0P9 as seed ortholog is 100%.

Group of orthologs #1132. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.pallidum:164

Q5KAE4              	100.00%		D3BNZ2              	100.00%
Bootstrap support for Q5KAE4 as seed ortholog is 100%.
Bootstrap support for D3BNZ2 as seed ortholog is 100%.

Group of orthologs #1133. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.pallidum:164

Q5KK34              	100.00%		D3BUS8              	100.00%
Bootstrap support for Q5KK34 as seed ortholog is 100%.
Bootstrap support for D3BUS8 as seed ortholog is 100%.

Group of orthologs #1134. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:163

Q5KH16              	100.00%		D3AY50              	100.00%
Bootstrap support for Q5KH16 as seed ortholog is 100%.
Bootstrap support for D3AY50 as seed ortholog is 100%.

Group of orthologs #1135. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:163

Q5KAI5              	100.00%		D3B5J6              	100.00%
Bootstrap support for Q5KAI5 as seed ortholog is 100%.
Bootstrap support for D3B5J6 as seed ortholog is 100%.

Group of orthologs #1136. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:163

Q5KL21              	100.00%		D3B267              	100.00%
Bootstrap support for Q5KL21 as seed ortholog is 100%.
Bootstrap support for D3B267 as seed ortholog is 100%.

Group of orthologs #1137. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:87

Q5KM53              	100.00%		D3B6S0              	100.00%
Bootstrap support for Q5KM53 as seed ortholog is 100%.
Bootstrap support for D3B6S0 as seed ortholog is 96%.

Group of orthologs #1138. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:163

Q5KK73              	100.00%		D3BAX9              	100.00%
Bootstrap support for Q5KK73 as seed ortholog is 100%.
Bootstrap support for D3BAX9 as seed ortholog is 100%.

Group of orthologs #1139. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:163

Q5KNJ8              	100.00%		D3BD72              	100.00%
Bootstrap support for Q5KNJ8 as seed ortholog is 100%.
Bootstrap support for D3BD72 as seed ortholog is 100%.

Group of orthologs #1140. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.pallidum:163

Q5KMA0              	100.00%		D3BTU3              	100.00%
Bootstrap support for Q5KMA0 as seed ortholog is 100%.
Bootstrap support for D3BTU3 as seed ortholog is 100%.

Group of orthologs #1141. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.pallidum:162

Q5KPF9              	100.00%		D3B388              	100.00%
                    	       		D3AYB9              	6.95%
Bootstrap support for Q5KPF9 as seed ortholog is 100%.
Bootstrap support for D3B388 as seed ortholog is 100%.

Group of orthologs #1142. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.pallidum:162

P0CS08              	100.00%		D3BPL5              	100.00%
Bootstrap support for P0CS08 as seed ortholog is 100%.
Bootstrap support for D3BPL5 as seed ortholog is 100%.

Group of orthologs #1143. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.pallidum:162

Q5KPS6              	100.00%		D3B9C0              	100.00%
Bootstrap support for Q5KPS6 as seed ortholog is 100%.
Bootstrap support for D3B9C0 as seed ortholog is 100%.

Group of orthologs #1144. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.pallidum:162

Q5KDI9              	100.00%		D3BKE4              	100.00%
Bootstrap support for Q5KDI9 as seed ortholog is 100%.
Bootstrap support for D3BKE4 as seed ortholog is 100%.

Group of orthologs #1145. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:6 P.pallidum:162

Q5KKJ8              	100.00%		D3BRT8              	100.00%
Bootstrap support for Q5KKJ8 as seed ortholog is 56%.
Alternative seed ortholog is Q5KN11 (6 bits away from this cluster)
Bootstrap support for D3BRT8 as seed ortholog is 100%.

Group of orthologs #1146. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.pallidum:161

Q5KA21              	100.00%		D3BCB9              	100.00%
Bootstrap support for Q5KA21 as seed ortholog is 100%.
Bootstrap support for D3BCB9 as seed ortholog is 100%.

Group of orthologs #1147. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.pallidum:161

Q5KF90              	100.00%		D3B7S7              	100.00%
Bootstrap support for Q5KF90 as seed ortholog is 100%.
Bootstrap support for D3B7S7 as seed ortholog is 100%.

Group of orthologs #1148. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.pallidum:161

Q5KA88              	100.00%		D3BM90              	100.00%
Bootstrap support for Q5KA88 as seed ortholog is 100%.
Bootstrap support for D3BM90 as seed ortholog is 100%.

Group of orthologs #1149. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.pallidum:161

Q5KB80              	100.00%		D3BQF7              	100.00%
Bootstrap support for Q5KB80 as seed ortholog is 100%.
Bootstrap support for D3BQF7 as seed ortholog is 100%.

Group of orthologs #1150. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.pallidum:161

Q5K8W2              	100.00%		D3BUN5              	100.00%
Bootstrap support for Q5K8W2 as seed ortholog is 100%.
Bootstrap support for D3BUN5 as seed ortholog is 100%.

Group of orthologs #1151. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.pallidum:160

Q5KE37              	100.00%		D3B511              	100.00%
Q5KE36              	35.42%		
Bootstrap support for Q5KE37 as seed ortholog is 100%.
Bootstrap support for D3B511 as seed ortholog is 100%.

Group of orthologs #1152. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.pallidum:160

P0CO14              	100.00%		D3BAC5              	100.00%
Bootstrap support for P0CO14 as seed ortholog is 100%.
Bootstrap support for D3BAC5 as seed ortholog is 100%.

Group of orthologs #1153. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.pallidum:160

Q5KKT8              	100.00%		D3BAK2              	100.00%
Bootstrap support for Q5KKT8 as seed ortholog is 100%.
Bootstrap support for D3BAK2 as seed ortholog is 100%.

Group of orthologs #1154. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.pallidum:160

Q5KFV8              	100.00%		D3BJW0              	100.00%
Bootstrap support for Q5KFV8 as seed ortholog is 100%.
Bootstrap support for D3BJW0 as seed ortholog is 100%.

Group of orthologs #1155. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.pallidum:38

Q5KLY1              	100.00%		D3BEU9              	100.00%
Bootstrap support for Q5KLY1 as seed ortholog is 97%.
Bootstrap support for D3BEU9 as seed ortholog is 93%.

Group of orthologs #1156. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.pallidum:159

Q5KIM4              	100.00%		D3BCZ6              	100.00%
                    	       		D3B3R0              	55.34%
                    	       		D3BD24              	39.47%
Bootstrap support for Q5KIM4 as seed ortholog is 100%.
Bootstrap support for D3BCZ6 as seed ortholog is 100%.

Group of orthologs #1157. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.pallidum:159

Q5KFT1              	100.00%		D3AW31              	100.00%
Bootstrap support for Q5KFT1 as seed ortholog is 100%.
Bootstrap support for D3AW31 as seed ortholog is 100%.

Group of orthologs #1158. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.pallidum:159

Q5KIG4              	100.00%		D3BB06              	100.00%
Bootstrap support for Q5KIG4 as seed ortholog is 100%.
Bootstrap support for D3BB06 as seed ortholog is 100%.

Group of orthologs #1159. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.pallidum:159

Q5KIC5              	100.00%		D3BBP3              	100.00%
Bootstrap support for Q5KIC5 as seed ortholog is 100%.
Bootstrap support for D3BBP3 as seed ortholog is 100%.

Group of orthologs #1160. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.pallidum:76

Q5K777              	100.00%		D3BRD6              	100.00%
Bootstrap support for Q5K777 as seed ortholog is 100%.
Bootstrap support for D3BRD6 as seed ortholog is 92%.

Group of orthologs #1161. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.pallidum:159

Q5KGB9              	100.00%		D3BTY7              	100.00%
Bootstrap support for Q5KGB9 as seed ortholog is 100%.
Bootstrap support for D3BTY7 as seed ortholog is 100%.

Group of orthologs #1162. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.pallidum:64

Q5KE51              	100.00%		D3B773              	100.00%
Bootstrap support for Q5KE51 as seed ortholog is 87%.
Bootstrap support for D3B773 as seed ortholog is 88%.

Group of orthologs #1163. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:158

Q5K864              	100.00%		D3BE66              	100.00%
Bootstrap support for Q5K864 as seed ortholog is 100%.
Bootstrap support for D3BE66 as seed ortholog is 100%.

Group of orthologs #1164. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:158

Q5KL83              	100.00%		D3B3I5              	100.00%
Bootstrap support for Q5KL83 as seed ortholog is 100%.
Bootstrap support for D3B3I5 as seed ortholog is 100%.

Group of orthologs #1165. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:158

Q5KA81              	100.00%		D3BVL7              	100.00%
Bootstrap support for Q5KA81 as seed ortholog is 100%.
Bootstrap support for D3BVL7 as seed ortholog is 100%.

Group of orthologs #1166. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:158

Q5KJX3              	100.00%		D3BM61              	100.00%
Bootstrap support for Q5KJX3 as seed ortholog is 100%.
Bootstrap support for D3BM61 as seed ortholog is 100%.

Group of orthologs #1167. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:158

Q5KIZ8              	100.00%		D3BS99              	100.00%
Bootstrap support for Q5KIZ8 as seed ortholog is 100%.
Bootstrap support for D3BS99 as seed ortholog is 100%.

Group of orthologs #1168. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.pallidum:158

Q5KN51              	100.00%		D3BQV7              	100.00%
Bootstrap support for Q5KN51 as seed ortholog is 100%.
Bootstrap support for D3BQV7 as seed ortholog is 100%.

Group of orthologs #1169. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:157

Q5KAH0              	100.00%		D3B9D0              	100.00%
Bootstrap support for Q5KAH0 as seed ortholog is 100%.
Bootstrap support for D3B9D0 as seed ortholog is 100%.

Group of orthologs #1170. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.pallidum:108

Q5K9R8              	100.00%		D3BB93              	100.00%
Bootstrap support for Q5K9R8 as seed ortholog is 69%.
Alternative seed ortholog is Q5KGA6 (21 bits away from this cluster)
Bootstrap support for D3BB93 as seed ortholog is 99%.

Group of orthologs #1171. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:73

P0CR34              	100.00%		D3BEA8              	100.00%
Bootstrap support for P0CR34 as seed ortholog is 99%.
Bootstrap support for D3BEA8 as seed ortholog is 98%.

Group of orthologs #1172. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:157

P0CQ52              	100.00%		D3BJB1              	100.00%
Bootstrap support for P0CQ52 as seed ortholog is 100%.
Bootstrap support for D3BJB1 as seed ortholog is 100%.

Group of orthologs #1173. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:157

Q5KG47              	100.00%		D3BPE8              	100.00%
Bootstrap support for Q5KG47 as seed ortholog is 100%.
Bootstrap support for D3BPE8 as seed ortholog is 100%.

Group of orthologs #1174. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:157

Q5KCY3              	100.00%		D3BU91              	100.00%
Bootstrap support for Q5KCY3 as seed ortholog is 100%.
Bootstrap support for D3BU91 as seed ortholog is 100%.

Group of orthologs #1175. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.pallidum:51

Q5KGB2              	100.00%		D3BU73              	100.00%
Bootstrap support for Q5KGB2 as seed ortholog is 100%.
Bootstrap support for D3BU73 as seed ortholog is 99%.

Group of orthologs #1176. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.pallidum:156

Q5K7G5              	100.00%		D3BCI4              	100.00%
                    	       		D3BLI6              	11.99%
Bootstrap support for Q5K7G5 as seed ortholog is 100%.
Bootstrap support for D3BCI4 as seed ortholog is 100%.

Group of orthologs #1177. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5KDN6              	100.00%		D3B5D6              	100.00%
Bootstrap support for Q5KDN6 as seed ortholog is 94%.
Bootstrap support for D3B5D6 as seed ortholog is 95%.

Group of orthologs #1178. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.pallidum:156

Q5KGJ7              	100.00%		D3B7N8              	100.00%
Bootstrap support for Q5KGJ7 as seed ortholog is 100%.
Bootstrap support for D3B7N8 as seed ortholog is 100%.

Group of orthologs #1179. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.pallidum:59

Q5K766              	100.00%		D3BM67              	100.00%
Bootstrap support for Q5K766 as seed ortholog is 100%.
Bootstrap support for D3BM67 as seed ortholog is 97%.

Group of orthologs #1180. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.pallidum:156

P0CO36              	100.00%		D3BS88              	100.00%
Bootstrap support for P0CO36 as seed ortholog is 100%.
Bootstrap support for D3BS88 as seed ortholog is 100%.

Group of orthologs #1181. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.pallidum:43

Q5KN20              	100.00%		D3BHL0              	100.00%
Bootstrap support for Q5KN20 as seed ortholog is 97%.
Bootstrap support for D3BHL0 as seed ortholog is 49%.
Alternative seed ortholog is D3AVN2 (43 bits away from this cluster)

Group of orthologs #1182. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.pallidum:156

Q5KC90              	100.00%		D3BVM6              	100.00%
Bootstrap support for Q5KC90 as seed ortholog is 100%.
Bootstrap support for D3BVM6 as seed ortholog is 100%.

Group of orthologs #1183. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.pallidum:155

P0CQ50              	100.00%		D3B7U1              	100.00%
Bootstrap support for P0CQ50 as seed ortholog is 100%.
Bootstrap support for D3B7U1 as seed ortholog is 100%.

Group of orthologs #1184. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.pallidum:155

Q5KLS8              	100.00%		D3BCH7              	100.00%
Bootstrap support for Q5KLS8 as seed ortholog is 100%.
Bootstrap support for D3BCH7 as seed ortholog is 100%.

Group of orthologs #1185. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.pallidum:52

Q5KPN8              	100.00%		D3BDR5              	100.00%
Bootstrap support for Q5KPN8 as seed ortholog is 100%.
Bootstrap support for D3BDR5 as seed ortholog is 97%.

Group of orthologs #1186. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.pallidum:154

Q5KI93              	100.00%		D3BAX5              	100.00%
                    	       		D3BIJ6              	29.18%
Bootstrap support for Q5KI93 as seed ortholog is 100%.
Bootstrap support for D3BAX5 as seed ortholog is 100%.

Group of orthologs #1187. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:154

Q5KJ91              	100.00%		D3B238              	100.00%
Bootstrap support for Q5KJ91 as seed ortholog is 99%.
Bootstrap support for D3B238 as seed ortholog is 100%.

Group of orthologs #1188. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:154

Q5KP45              	100.00%		D3B6M1              	100.00%
Bootstrap support for Q5KP45 as seed ortholog is 99%.
Bootstrap support for D3B6M1 as seed ortholog is 100%.

Group of orthologs #1189. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.pallidum:62

Q5KAZ1              	100.00%		D3BCP6              	100.00%
                    	       		D3BCW5              	84.05%
                    	       		D3BDW5              	43.30%
                    	       		D3BDV5              	37.61%
                    	       		D3B0Z2              	27.35%
Bootstrap support for Q5KAZ1 as seed ortholog is 99%.
Bootstrap support for D3BCP6 as seed ortholog is 97%.

Group of orthologs #1190. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

Q5K8H5              	100.00%		D3AWN6              	100.00%
                    	       		D3BIG9              	15.00%
Bootstrap support for Q5K8H5 as seed ortholog is 100%.
Bootstrap support for D3AWN6 as seed ortholog is 100%.

Group of orthologs #1191. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

P0CM76              	100.00%		D3B2K3              	100.00%
Bootstrap support for P0CM76 as seed ortholog is 100%.
Bootstrap support for D3B2K3 as seed ortholog is 100%.

Group of orthologs #1192. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

Q5KQ40              	100.00%		D3B1Q8              	100.00%
Bootstrap support for Q5KQ40 as seed ortholog is 100%.
Bootstrap support for D3B1Q8 as seed ortholog is 100%.

Group of orthologs #1193. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

Q5KPE9              	100.00%		D3BCE9              	100.00%
Bootstrap support for Q5KPE9 as seed ortholog is 100%.
Bootstrap support for D3BCE9 as seed ortholog is 100%.

Group of orthologs #1194. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

Q5KIH4              	100.00%		D3BIR0              	100.00%
Bootstrap support for Q5KIH4 as seed ortholog is 100%.
Bootstrap support for D3BIR0 as seed ortholog is 100%.

Group of orthologs #1195. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:153

Q5KGC6              	100.00%		D3BLA0              	100.00%
Bootstrap support for Q5KGC6 as seed ortholog is 99%.
Bootstrap support for D3BLA0 as seed ortholog is 100%.

Group of orthologs #1196. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

Q5KGI4              	100.00%		D3BN10              	100.00%
Bootstrap support for Q5KGI4 as seed ortholog is 100%.
Bootstrap support for D3BN10 as seed ortholog is 100%.

Group of orthologs #1197. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.pallidum:153

Q5KGV9              	100.00%		D3BTW0              	100.00%
Bootstrap support for Q5KGV9 as seed ortholog is 100%.
Bootstrap support for D3BTW0 as seed ortholog is 100%.

Group of orthologs #1198. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.pallidum:152

Q5KC07              	100.00%		D3B0W5              	100.00%
Bootstrap support for Q5KC07 as seed ortholog is 100%.
Bootstrap support for D3B0W5 as seed ortholog is 100%.

Group of orthologs #1199. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.pallidum:152

Q5KF78              	100.00%		D3B151              	100.00%
Bootstrap support for Q5KF78 as seed ortholog is 100%.
Bootstrap support for D3B151 as seed ortholog is 100%.

Group of orthologs #1200. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.pallidum:105

Q5KIF5              	100.00%		D3BAX8              	100.00%
Bootstrap support for Q5KIF5 as seed ortholog is 100%.
Bootstrap support for D3BAX8 as seed ortholog is 99%.

Group of orthologs #1201. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5KFV6              	100.00%		D3AYW2              	100.00%
Bootstrap support for Q5KFV6 as seed ortholog is 100%.
Bootstrap support for D3AYW2 as seed ortholog is 100%.

Group of orthologs #1202. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5K7R1              	100.00%		D3B806              	100.00%
Bootstrap support for Q5K7R1 as seed ortholog is 100%.
Bootstrap support for D3B806 as seed ortholog is 100%.

Group of orthologs #1203. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5KNA8              	100.00%		D3AW71              	100.00%
Bootstrap support for Q5KNA8 as seed ortholog is 100%.
Bootstrap support for D3AW71 as seed ortholog is 100%.

Group of orthologs #1204. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5KA31              	100.00%		D3B9M6              	100.00%
Bootstrap support for Q5KA31 as seed ortholog is 100%.
Bootstrap support for D3B9M6 as seed ortholog is 100%.

Group of orthologs #1205. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5KID1              	100.00%		D3B3S4              	100.00%
Bootstrap support for Q5KID1 as seed ortholog is 100%.
Bootstrap support for D3B3S4 as seed ortholog is 100%.

Group of orthologs #1206. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5K9A1              	100.00%		D3BNY1              	100.00%
Bootstrap support for Q5K9A1 as seed ortholog is 100%.
Bootstrap support for D3BNY1 as seed ortholog is 100%.

Group of orthologs #1207. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.pallidum:151

Q5KNF9              	100.00%		D3BN51              	100.00%
Bootstrap support for Q5KNF9 as seed ortholog is 100%.
Bootstrap support for D3BN51 as seed ortholog is 100%.

Group of orthologs #1208. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:150

Q5KA03              	100.00%		D3BNA9              	100.00%
Q5KPE0              	15.28%		D3BTR9              	32.44%
                    	       		D3BF54              	24.05%
                    	       		D3BEV2              	16.46%
                    	       		D3BEV3              	12.03%
                    	       		D3BEV1              	6.01%
Bootstrap support for Q5KA03 as seed ortholog is 100%.
Bootstrap support for D3BNA9 as seed ortholog is 100%.

Group of orthologs #1209. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:51

Q5KEU0              	100.00%		D3BJU4              	100.00%
                    	       		D3BAU0              	34.11%
Bootstrap support for Q5KEU0 as seed ortholog is 97%.
Bootstrap support for D3BJU4 as seed ortholog is 97%.

Group of orthologs #1210. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:150

Q5KHZ3              	100.00%		D3B2Y5              	100.00%
Bootstrap support for Q5KHZ3 as seed ortholog is 100%.
Bootstrap support for D3B2Y5 as seed ortholog is 100%.

Group of orthologs #1211. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:150

Q5KL77              	100.00%		D3BAW8              	100.00%
Bootstrap support for Q5KL77 as seed ortholog is 100%.
Bootstrap support for D3BAW8 as seed ortholog is 100%.

Group of orthologs #1212. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:150

Q5KPW1              	100.00%		D3BG35              	100.00%
Bootstrap support for Q5KPW1 as seed ortholog is 100%.
Bootstrap support for D3BG35 as seed ortholog is 100%.

Group of orthologs #1213. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:70

Q5KHK0              	100.00%		D3BN57              	100.00%
Bootstrap support for Q5KHK0 as seed ortholog is 100%.
Bootstrap support for D3BN57 as seed ortholog is 99%.

Group of orthologs #1214. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:150

Q5KHA1              	100.00%		D3BSK0              	100.00%
Bootstrap support for Q5KHA1 as seed ortholog is 100%.
Bootstrap support for D3BSK0 as seed ortholog is 100%.

Group of orthologs #1215. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.pallidum:150

Q5KPH8              	100.00%		D3BQ40              	100.00%
Bootstrap support for Q5KPH8 as seed ortholog is 100%.
Bootstrap support for D3BQ40 as seed ortholog is 100%.

Group of orthologs #1216. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5K8B3              	100.00%		D3BQ72              	100.00%
                    	       		D3B9K5              	30.02%
Bootstrap support for Q5K8B3 as seed ortholog is 100%.
Bootstrap support for D3BQ72 as seed ortholog is 100%.

Group of orthologs #1217. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5K9U2              	100.00%		D3B8X2              	100.00%
Bootstrap support for Q5K9U2 as seed ortholog is 100%.
Bootstrap support for D3B8X2 as seed ortholog is 100%.

Group of orthologs #1218. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5KL89              	100.00%		D3B4P6              	100.00%
Bootstrap support for Q5KL89 as seed ortholog is 100%.
Bootstrap support for D3B4P6 as seed ortholog is 100%.

Group of orthologs #1219. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5K721              	100.00%		D3BMA5              	100.00%
Bootstrap support for Q5K721 as seed ortholog is 100%.
Bootstrap support for D3BMA5 as seed ortholog is 100%.

Group of orthologs #1220. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5KJA8              	100.00%		D3BE08              	100.00%
Bootstrap support for Q5KJA8 as seed ortholog is 100%.
Bootstrap support for D3BE08 as seed ortholog is 100%.

Group of orthologs #1221. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:5

Q5KEK6              	100.00%		D3BK70              	100.00%
Bootstrap support for Q5KEK6 as seed ortholog is 91%.
Bootstrap support for D3BK70 as seed ortholog is 71%.
Alternative seed ortholog is D3B9W6 (5 bits away from this cluster)

Group of orthologs #1222. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5KKW5              	100.00%		D3BIP2              	100.00%
Bootstrap support for Q5KKW5 as seed ortholog is 100%.
Bootstrap support for D3BIP2 as seed ortholog is 100%.

Group of orthologs #1223. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.pallidum:149

Q5KNS3              	100.00%		D3BRN9              	100.00%
Bootstrap support for Q5KNS3 as seed ortholog is 100%.
Bootstrap support for D3BRN9 as seed ortholog is 100%.

Group of orthologs #1224. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.pallidum:81

P0CL94              	100.00%		D3B703              	100.00%
Bootstrap support for P0CL94 as seed ortholog is 100%.
Bootstrap support for D3B703 as seed ortholog is 99%.

Group of orthologs #1225. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.pallidum:148

Q5KCV9              	100.00%		D3B3B6              	100.00%
Bootstrap support for Q5KCV9 as seed ortholog is 100%.
Bootstrap support for D3B3B6 as seed ortholog is 100%.

Group of orthologs #1226. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.pallidum:148

P0CO06              	100.00%		D3BPS7              	100.00%
Bootstrap support for P0CO06 as seed ortholog is 100%.
Bootstrap support for D3BPS7 as seed ortholog is 100%.

Group of orthologs #1227. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.pallidum:148

Q5KM35              	100.00%		D3BGC7              	100.00%
Bootstrap support for Q5KM35 as seed ortholog is 100%.
Bootstrap support for D3BGC7 as seed ortholog is 100%.

Group of orthologs #1228. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.pallidum:74

Q5KGW6              	100.00%		D3BUZ6              	100.00%
Bootstrap support for Q5KGW6 as seed ortholog is 76%.
Bootstrap support for D3BUZ6 as seed ortholog is 98%.

Group of orthologs #1229. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.pallidum:84

Q5KQ86              	100.00%		D3BE16              	100.00%
Bootstrap support for Q5KQ86 as seed ortholog is 73%.
Alternative seed ortholog is Q5KFQ2 (17 bits away from this cluster)
Bootstrap support for D3BE16 as seed ortholog is 99%.

Group of orthologs #1230. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:146

Q5KJD6              	100.00%		D3BEG4              	100.00%
Q5KJA5              	28.76%		
Q5K8F0              	26.80%		
Bootstrap support for Q5KJD6 as seed ortholog is 100%.
Bootstrap support for D3BEG4 as seed ortholog is 100%.

Group of orthologs #1231. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:82

Q5KFD4              	100.00%		D3B8B5              	100.00%
                    	       		D3B747              	8.74%
Bootstrap support for Q5KFD4 as seed ortholog is 99%.
Bootstrap support for D3B8B5 as seed ortholog is 99%.

Group of orthologs #1232. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.pallidum:32

Q5K818              	100.00%		D3B2T9              	100.00%
Bootstrap support for Q5K818 as seed ortholog is 68%.
Alternative seed ortholog is Q5KI42 (11 bits away from this cluster)
Bootstrap support for D3B2T9 as seed ortholog is 90%.

Group of orthologs #1233. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:146

Q5KEQ0              	100.00%		D3AYM7              	100.00%
Bootstrap support for Q5KEQ0 as seed ortholog is 100%.
Bootstrap support for D3AYM7 as seed ortholog is 100%.

Group of orthologs #1234. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:59

P0CP96              	100.00%		D3B9X0              	100.00%
Bootstrap support for P0CP96 as seed ortholog is 100%.
Bootstrap support for D3B9X0 as seed ortholog is 99%.

Group of orthologs #1235. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:146

Q5K9U5              	100.00%		D3BNV1              	100.00%
Bootstrap support for Q5K9U5 as seed ortholog is 100%.
Bootstrap support for D3BNV1 as seed ortholog is 100%.

Group of orthologs #1236. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:146

Q5KMB9              	100.00%		D3BIW4              	100.00%
Bootstrap support for Q5KMB9 as seed ortholog is 100%.
Bootstrap support for D3BIW4 as seed ortholog is 100%.

Group of orthologs #1237. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:146

Q5KLX2              	100.00%		D3BJM4              	100.00%
Bootstrap support for Q5KLX2 as seed ortholog is 100%.
Bootstrap support for D3BJM4 as seed ortholog is 100%.

Group of orthologs #1238. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.pallidum:146

Q5KDF1              	100.00%		D3BVG1              	100.00%
Bootstrap support for Q5KDF1 as seed ortholog is 100%.
Bootstrap support for D3BVG1 as seed ortholog is 100%.

Group of orthologs #1239. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.pallidum:145

P0CN64              	100.00%		D3B6B2              	100.00%
Bootstrap support for P0CN64 as seed ortholog is 100%.
Bootstrap support for D3B6B2 as seed ortholog is 100%.

Group of orthologs #1240. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.pallidum:145

Q5K7J1              	100.00%		D3B7E1              	100.00%
Bootstrap support for Q5K7J1 as seed ortholog is 100%.
Bootstrap support for D3B7E1 as seed ortholog is 100%.

Group of orthologs #1241. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.pallidum:145

Q5KB29              	100.00%		D3B9E9              	100.00%
Bootstrap support for Q5KB29 as seed ortholog is 100%.
Bootstrap support for D3B9E9 as seed ortholog is 100%.

Group of orthologs #1242. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.pallidum:145

Q5KBI4              	100.00%		D3BGR1              	100.00%
Bootstrap support for Q5KBI4 as seed ortholog is 100%.
Bootstrap support for D3BGR1 as seed ortholog is 100%.

Group of orthologs #1243. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:145

Q5KM16              	100.00%		D3BHA4              	100.00%
Bootstrap support for Q5KM16 as seed ortholog is 98%.
Bootstrap support for D3BHA4 as seed ortholog is 100%.

Group of orthologs #1244. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.pallidum:145

Q5KIK2              	100.00%		D3BQC9              	100.00%
Bootstrap support for Q5KIK2 as seed ortholog is 100%.
Bootstrap support for D3BQC9 as seed ortholog is 100%.

Group of orthologs #1245. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

P0CS64              	100.00%		D3B0E0              	100.00%
Bootstrap support for P0CS64 as seed ortholog is 100%.
Bootstrap support for D3B0E0 as seed ortholog is 100%.

Group of orthologs #1246. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

Q5KJ49              	100.00%		D3AYE5              	100.00%
Bootstrap support for Q5KJ49 as seed ortholog is 100%.
Bootstrap support for D3AYE5 as seed ortholog is 100%.

Group of orthologs #1247. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

Q5KAU4              	100.00%		D3B6Y3              	100.00%
Bootstrap support for Q5KAU4 as seed ortholog is 100%.
Bootstrap support for D3B6Y3 as seed ortholog is 100%.

Group of orthologs #1248. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

Q5KNT0              	100.00%		D3AZD5              	100.00%
Bootstrap support for Q5KNT0 as seed ortholog is 100%.
Bootstrap support for D3AZD5 as seed ortholog is 100%.

Group of orthologs #1249. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.pallidum:144

Q5KKT1              	100.00%		D3B7L3              	100.00%
Bootstrap support for Q5KKT1 as seed ortholog is 98%.
Bootstrap support for D3B7L3 as seed ortholog is 100%.

Group of orthologs #1250. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

Q5KJC4              	100.00%		D3BGE7              	100.00%
Bootstrap support for Q5KJC4 as seed ortholog is 100%.
Bootstrap support for D3BGE7 as seed ortholog is 100%.

Group of orthologs #1251. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

Q5K9H3              	100.00%		D3BT13              	100.00%
Bootstrap support for Q5K9H3 as seed ortholog is 100%.
Bootstrap support for D3BT13 as seed ortholog is 100%.

Group of orthologs #1252. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.pallidum:144

Q5KH86              	100.00%		D3BM05              	100.00%
Bootstrap support for Q5KH86 as seed ortholog is 100%.
Bootstrap support for D3BM05 as seed ortholog is 100%.

Group of orthologs #1253. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:144

Q5KK88              	100.00%		D3BQ12              	100.00%
Bootstrap support for Q5KK88 as seed ortholog is 94%.
Bootstrap support for D3BQ12 as seed ortholog is 100%.

Group of orthologs #1254. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.pallidum:143

Q5KLJ6              	100.00%		D3AVM9              	100.00%
Bootstrap support for Q5KLJ6 as seed ortholog is 100%.
Bootstrap support for D3AVM9 as seed ortholog is 100%.

Group of orthologs #1255. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.pallidum:143

Q5KID5              	100.00%		D3B2C1              	100.00%
Bootstrap support for Q5KID5 as seed ortholog is 100%.
Bootstrap support for D3B2C1 as seed ortholog is 100%.

Group of orthologs #1256. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.pallidum:143

Q5KPM8              	100.00%		D3AZM6              	100.00%
Bootstrap support for Q5KPM8 as seed ortholog is 100%.
Bootstrap support for D3AZM6 as seed ortholog is 100%.

Group of orthologs #1257. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.pallidum:143

Q5KAX8              	100.00%		D3BFX3              	100.00%
Bootstrap support for Q5KAX8 as seed ortholog is 100%.
Bootstrap support for D3BFX3 as seed ortholog is 100%.

Group of orthologs #1258. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:26 P.pallidum:143

Q5KIK8              	100.00%		D3BRK5              	100.00%
Bootstrap support for Q5KIK8 as seed ortholog is 80%.
Bootstrap support for D3BRK5 as seed ortholog is 100%.

Group of orthologs #1259. Best score 142 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.pallidum:142

Q5KNW2              	100.00%		D3AY45              	100.00%
Bootstrap support for Q5KNW2 as seed ortholog is 100%.
Bootstrap support for D3AY45 as seed ortholog is 100%.

Group of orthologs #1260. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.pallidum:141

Q5KJ48              	100.00%		D3B5Y2              	100.00%
                    	       		D3BSL2              	100.00%
Bootstrap support for Q5KJ48 as seed ortholog is 100%.
Bootstrap support for D3B5Y2 as seed ortholog is 100%.
Bootstrap support for D3BSL2 as seed ortholog is 100%.

Group of orthologs #1261. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.pallidum:141

Q5K8I4              	100.00%		D3BKL8              	100.00%
Bootstrap support for Q5K8I4 as seed ortholog is 100%.
Bootstrap support for D3BKL8 as seed ortholog is 100%.

Group of orthologs #1262. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.pallidum:141

Q5KIP7              	100.00%		D3BCC3              	100.00%
Bootstrap support for Q5KIP7 as seed ortholog is 100%.
Bootstrap support for D3BCC3 as seed ortholog is 100%.

Group of orthologs #1263. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.pallidum:141

Q5KIJ6              	100.00%		D3BJ37              	100.00%
Bootstrap support for Q5KIJ6 as seed ortholog is 100%.
Bootstrap support for D3BJ37 as seed ortholog is 100%.

Group of orthologs #1264. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.pallidum:141

Q5KHU0              	100.00%		D3BKA2              	100.00%
Bootstrap support for Q5KHU0 as seed ortholog is 100%.
Bootstrap support for D3BKA2 as seed ortholog is 100%.

Group of orthologs #1265. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.pallidum:141

Q5KHE9              	100.00%		D3BLG3              	100.00%
Bootstrap support for Q5KHE9 as seed ortholog is 100%.
Bootstrap support for D3BLG3 as seed ortholog is 100%.

Group of orthologs #1266. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KG49              	100.00%		D3B2Q7              	100.00%
Q5KG50              	35.18%		
Bootstrap support for Q5KG49 as seed ortholog is 100%.
Bootstrap support for D3B2Q7 as seed ortholog is 100%.

Group of orthologs #1267. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KFE4              	100.00%		D3AZI0              	100.00%
Bootstrap support for Q5KFE4 as seed ortholog is 100%.
Bootstrap support for D3AZI0 as seed ortholog is 100%.

Group of orthologs #1268. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KMH2              	100.00%		D3B1P5              	100.00%
Bootstrap support for Q5KMH2 as seed ortholog is 100%.
Bootstrap support for D3B1P5 as seed ortholog is 100%.

Group of orthologs #1269. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:140

Q5KLP3              	100.00%		D3B5S1              	100.00%
Bootstrap support for Q5KLP3 as seed ortholog is 99%.
Bootstrap support for D3B5S1 as seed ortholog is 100%.

Group of orthologs #1270. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KLM2              	100.00%		D3BE63              	100.00%
Bootstrap support for Q5KLM2 as seed ortholog is 100%.
Bootstrap support for D3BE63 as seed ortholog is 100%.

Group of orthologs #1271. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KL68              	100.00%		D3BF17              	100.00%
Bootstrap support for Q5KL68 as seed ortholog is 100%.
Bootstrap support for D3BF17 as seed ortholog is 100%.

Group of orthologs #1272. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5K888              	100.00%		D3BU02              	100.00%
Bootstrap support for Q5K888 as seed ortholog is 100%.
Bootstrap support for D3BU02 as seed ortholog is 100%.

Group of orthologs #1273. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KJH9              	100.00%		D3BJX5              	100.00%
Bootstrap support for Q5KJH9 as seed ortholog is 100%.
Bootstrap support for D3BJX5 as seed ortholog is 100%.

Group of orthologs #1274. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.pallidum:140

Q5KDQ5              	100.00%		D3BRH9              	100.00%
Bootstrap support for Q5KDQ5 as seed ortholog is 100%.
Bootstrap support for D3BRH9 as seed ortholog is 100%.

Group of orthologs #1275. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.pallidum:139

Q5KAT1              	100.00%		D3BMP8              	100.00%
Q5KAU3              	71.18%		D3B338              	25.98%
Bootstrap support for Q5KAT1 as seed ortholog is 100%.
Bootstrap support for D3BMP8 as seed ortholog is 100%.

Group of orthologs #1276. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:8 P.pallidum:139

Q5K8H3              	100.00%		D3AW96              	100.00%
Bootstrap support for Q5K8H3 as seed ortholog is 69%.
Alternative seed ortholog is Q5KD38 (8 bits away from this cluster)
Bootstrap support for D3AW96 as seed ortholog is 100%.

Group of orthologs #1277. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.pallidum:139

Q5K8W6              	100.00%		D3BBZ9              	100.00%
Bootstrap support for Q5K8W6 as seed ortholog is 100%.
Bootstrap support for D3BBZ9 as seed ortholog is 100%.

Group of orthologs #1278. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:138

Q5K8J3              	100.00%		D3AWU9              	100.00%
Bootstrap support for Q5K8J3 as seed ortholog is 100%.
Bootstrap support for D3AWU9 as seed ortholog is 100%.

Group of orthologs #1279. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:21

Q5KDK5              	100.00%		D3B3G4              	100.00%
Bootstrap support for Q5KDK5 as seed ortholog is 100%.
Bootstrap support for D3B3G4 as seed ortholog is 56%.
Alternative seed ortholog is D3BJI0 (21 bits away from this cluster)

Group of orthologs #1280. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:138

Q5KMX2              	100.00%		D3AWE0              	100.00%
Bootstrap support for Q5KMX2 as seed ortholog is 100%.
Bootstrap support for D3AWE0 as seed ortholog is 100%.

Group of orthologs #1281. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:138

Q5KIB6              	100.00%		D3BC01              	100.00%
Bootstrap support for Q5KIB6 as seed ortholog is 100%.
Bootstrap support for D3BC01 as seed ortholog is 100%.

Group of orthologs #1282. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:138

Q5KHE4              	100.00%		D3BEA6              	100.00%
Bootstrap support for Q5KHE4 as seed ortholog is 100%.
Bootstrap support for D3BEA6 as seed ortholog is 100%.

Group of orthologs #1283. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:138

Q5KCD1              	100.00%		D3BKI7              	100.00%
Bootstrap support for Q5KCD1 as seed ortholog is 100%.
Bootstrap support for D3BKI7 as seed ortholog is 100%.

Group of orthologs #1284. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:84

Q5K7D5              	100.00%		D3BQD0              	100.00%
Bootstrap support for Q5K7D5 as seed ortholog is 98%.
Bootstrap support for D3BQD0 as seed ortholog is 98%.

Group of orthologs #1285. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:138

Q5KK61              	100.00%		D3BK14              	100.00%
Bootstrap support for Q5KK61 as seed ortholog is 100%.
Bootstrap support for D3BK14 as seed ortholog is 100%.

Group of orthologs #1286. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.pallidum:78

Q5KFR2              	100.00%		D3BR70              	100.00%
Bootstrap support for Q5KFR2 as seed ortholog is 100%.
Bootstrap support for D3BR70 as seed ortholog is 99%.

Group of orthologs #1287. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.pallidum:137

Q5KEK7              	100.00%		D3AY36              	100.00%
Bootstrap support for Q5KEK7 as seed ortholog is 100%.
Bootstrap support for D3AY36 as seed ortholog is 100%.

Group of orthologs #1288. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:26 P.pallidum:31

Q5KHP6              	100.00%		D3B103              	100.00%
Bootstrap support for Q5KHP6 as seed ortholog is 57%.
Alternative seed ortholog is Q5KDH5 (26 bits away from this cluster)
Bootstrap support for D3B103 as seed ortholog is 81%.

Group of orthologs #1289. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.pallidum:46

Q5KFL6              	100.00%		D3BHT1              	100.00%
Bootstrap support for Q5KFL6 as seed ortholog is 100%.
Bootstrap support for D3BHT1 as seed ortholog is 98%.

Group of orthologs #1290. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.pallidum:137

Q5KLK6              	100.00%		D3BIL1              	100.00%
Bootstrap support for Q5KLK6 as seed ortholog is 100%.
Bootstrap support for D3BIL1 as seed ortholog is 100%.

Group of orthologs #1291. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.pallidum:136

Q5KKF7              	100.00%		D3AY37              	100.00%
Q5KPE4              	8.07%		
Bootstrap support for Q5KKF7 as seed ortholog is 100%.
Bootstrap support for D3AY37 as seed ortholog is 100%.

Group of orthologs #1292. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.pallidum:136

P0CR76              	100.00%		D3B2Q4              	100.00%
Bootstrap support for P0CR76 as seed ortholog is 100%.
Bootstrap support for D3B2Q4 as seed ortholog is 100%.

Group of orthologs #1293. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.pallidum:136

Q5KBE4              	100.00%		D3B447              	100.00%
Bootstrap support for Q5KBE4 as seed ortholog is 100%.
Bootstrap support for D3B447 as seed ortholog is 100%.

Group of orthologs #1294. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.pallidum:136

Q5KDN1              	100.00%		D3B2R4              	100.00%
Bootstrap support for Q5KDN1 as seed ortholog is 100%.
Bootstrap support for D3B2R4 as seed ortholog is 100%.

Group of orthologs #1295. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:136

Q5KLA5              	100.00%		D3B5D0              	100.00%
Bootstrap support for Q5KLA5 as seed ortholog is 97%.
Bootstrap support for D3B5D0 as seed ortholog is 100%.

Group of orthologs #1296. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.pallidum:136

Q5KGZ8              	100.00%		D3BB44              	100.00%
Bootstrap support for Q5KGZ8 as seed ortholog is 100%.
Bootstrap support for D3BB44 as seed ortholog is 100%.

Group of orthologs #1297. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:135

Q5K7A6              	100.00%		D3B0I1              	100.00%
Bootstrap support for Q5K7A6 as seed ortholog is 100%.
Bootstrap support for D3B0I1 as seed ortholog is 100%.

Group of orthologs #1298. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:135

Q5KC37              	100.00%		D3AZD1              	100.00%
Bootstrap support for Q5KC37 as seed ortholog is 100%.
Bootstrap support for D3AZD1 as seed ortholog is 100%.

Group of orthologs #1299. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:135

P0CQ12              	100.00%		D3BAH6              	100.00%
Bootstrap support for P0CQ12 as seed ortholog is 100%.
Bootstrap support for D3BAH6 as seed ortholog is 100%.

Group of orthologs #1300. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:13 P.pallidum:2

Q5KGS0              	100.00%		D3BAP8              	100.00%
Bootstrap support for Q5KGS0 as seed ortholog is 65%.
Alternative seed ortholog is Q5KNZ3 (13 bits away from this cluster)
Bootstrap support for D3BAP8 as seed ortholog is 64%.
Alternative seed ortholog is D3BEF7 (2 bits away from this cluster)

Group of orthologs #1301. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.pallidum:135

Q5KE38              	100.00%		D3BSK1              	100.00%
Bootstrap support for Q5KE38 as seed ortholog is 100%.
Bootstrap support for D3BSK1 as seed ortholog is 100%.

Group of orthologs #1302. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:28

Q5KLB1              	100.00%		D3B201              	100.00%
                    	       		D3BPA0              	6.43%
Bootstrap support for Q5KLB1 as seed ortholog is 100%.
Bootstrap support for D3B201 as seed ortholog is 85%.

Group of orthologs #1303. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:84

Q5K9F1              	100.00%		D3B2G2              	100.00%
Bootstrap support for Q5K9F1 as seed ortholog is 100%.
Bootstrap support for D3B2G2 as seed ortholog is 99%.

Group of orthologs #1304. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

Q5KEX8              	100.00%		D3B437              	100.00%
Bootstrap support for Q5KEX8 as seed ortholog is 100%.
Bootstrap support for D3B437 as seed ortholog is 100%.

Group of orthologs #1305. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

Q5KNC7              	100.00%		D3B0E6              	100.00%
Bootstrap support for Q5KNC7 as seed ortholog is 100%.
Bootstrap support for D3B0E6 as seed ortholog is 100%.

Group of orthologs #1306. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

P0CO50              	100.00%		D3BIG5              	100.00%
Bootstrap support for P0CO50 as seed ortholog is 100%.
Bootstrap support for D3BIG5 as seed ortholog is 100%.

Group of orthologs #1307. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

Q5KD76              	100.00%		D3BH90              	100.00%
Bootstrap support for Q5KD76 as seed ortholog is 100%.
Bootstrap support for D3BH90 as seed ortholog is 100%.

Group of orthologs #1308. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

Q5KHZ1              	100.00%		D3BEZ0              	100.00%
Bootstrap support for Q5KHZ1 as seed ortholog is 100%.
Bootstrap support for D3BEZ0 as seed ortholog is 100%.

Group of orthologs #1309. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

Q5K9N6              	100.00%		D3BNU2              	100.00%
Bootstrap support for Q5K9N6 as seed ortholog is 100%.
Bootstrap support for D3BNU2 as seed ortholog is 100%.

Group of orthologs #1310. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.pallidum:134

Q5KDT5              	100.00%		D3BU33              	100.00%
Bootstrap support for Q5KDT5 as seed ortholog is 100%.
Bootstrap support for D3BU33 as seed ortholog is 100%.

Group of orthologs #1311. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

Q5KAD8              	100.00%		D3AYG6              	100.00%
                    	       		D3BQK6              	8.75%
Bootstrap support for Q5KAD8 as seed ortholog is 100%.
Bootstrap support for D3AYG6 as seed ortholog is 100%.

Group of orthologs #1312. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

Q5KI12              	100.00%		D3AZX3              	100.00%
Bootstrap support for Q5KI12 as seed ortholog is 100%.
Bootstrap support for D3AZX3 as seed ortholog is 100%.

Group of orthologs #1313. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.pallidum:133

Q5KPJ5              	100.00%		D3AX55              	100.00%
Bootstrap support for Q5KPJ5 as seed ortholog is 91%.
Bootstrap support for D3AX55 as seed ortholog is 100%.

Group of orthologs #1314. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

Q5K9X5              	100.00%		D3BDC7              	100.00%
Bootstrap support for Q5K9X5 as seed ortholog is 100%.
Bootstrap support for D3BDC7 as seed ortholog is 100%.

Group of orthologs #1315. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

P0CS06              	100.00%		D3BIG0              	100.00%
Bootstrap support for P0CS06 as seed ortholog is 100%.
Bootstrap support for D3BIG0 as seed ortholog is 100%.

Group of orthologs #1316. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

P0CN00              	100.00%		D3BPC7              	100.00%
Bootstrap support for P0CN00 as seed ortholog is 100%.
Bootstrap support for D3BPC7 as seed ortholog is 100%.

Group of orthologs #1317. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.pallidum:133

Q5KMC4              	100.00%		D3BQQ8              	100.00%
Bootstrap support for Q5KMC4 as seed ortholog is 100%.
Bootstrap support for D3BQQ8 as seed ortholog is 100%.

Group of orthologs #1318. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.pallidum:132

Q5KFY9              	100.00%		D3BEJ2              	100.00%
                    	       		D3BP50              	26.20%
                    	       		D3B270              	23.74%
                    	       		D3AVY9              	14.27%
                    	       		D3BNB4              	8.07%
                    	       		D3AWA4              	5.38%
Bootstrap support for Q5KFY9 as seed ortholog is 100%.
Bootstrap support for D3BEJ2 as seed ortholog is 100%.

Group of orthologs #1319. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.pallidum:132

Q5KEA5              	100.00%		D3B482              	100.00%
Bootstrap support for Q5KEA5 as seed ortholog is 100%.
Bootstrap support for D3B482 as seed ortholog is 100%.

Group of orthologs #1320. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5KA76              	100.00%		D3AY63              	100.00%
Bootstrap support for Q5KA76 as seed ortholog is 100%.
Bootstrap support for D3AY63 as seed ortholog is 100%.

Group of orthologs #1321. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5KHN0              	100.00%		D3AYE2              	100.00%
Bootstrap support for Q5KHN0 as seed ortholog is 100%.
Bootstrap support for D3AYE2 as seed ortholog is 100%.

Group of orthologs #1322. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5K7C8              	100.00%		D3B7V8              	100.00%
Bootstrap support for Q5K7C8 as seed ortholog is 100%.
Bootstrap support for D3B7V8 as seed ortholog is 100%.

Group of orthologs #1323. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5KEX0              	100.00%		D3B4P8              	100.00%
Bootstrap support for Q5KEX0 as seed ortholog is 100%.
Bootstrap support for D3B4P8 as seed ortholog is 100%.

Group of orthologs #1324. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5KA94              	100.00%		D3BIE2              	100.00%
Bootstrap support for Q5KA94 as seed ortholog is 100%.
Bootstrap support for D3BIE2 as seed ortholog is 100%.

Group of orthologs #1325. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5KFJ8              	100.00%		D3BJL4              	100.00%
Bootstrap support for Q5KFJ8 as seed ortholog is 100%.
Bootstrap support for D3BJL4 as seed ortholog is 100%.

Group of orthologs #1326. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.pallidum:131

Q5KMU1              	100.00%		D3BF03              	100.00%
Bootstrap support for Q5KMU1 as seed ortholog is 100%.
Bootstrap support for D3BF03 as seed ortholog is 100%.

Group of orthologs #1327. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:131

Q5KFU2              	100.00%		D3BQ53              	100.00%
Bootstrap support for Q5KFU2 as seed ortholog is 99%.
Bootstrap support for D3BQ53 as seed ortholog is 100%.

Group of orthologs #1328. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.pallidum:130

Q5K918              	100.00%		D3BJD4              	100.00%
                    	       		D3BB55              	44.26%
                    	       		D3BB43              	42.01%
                    	       		D3BJH4              	17.11%
                    	       		D3BCX6              	7.79%
Bootstrap support for Q5K918 as seed ortholog is 100%.
Bootstrap support for D3BJD4 as seed ortholog is 100%.

Group of orthologs #1329. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.pallidum:37

Q5KCM4              	100.00%		D3B2I6              	100.00%
Bootstrap support for Q5KCM4 as seed ortholog is 100%.
Bootstrap support for D3B2I6 as seed ortholog is 91%.

Group of orthologs #1330. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.pallidum:130

Q5K8Z0              	100.00%		D3B7E2              	100.00%
Bootstrap support for Q5K8Z0 as seed ortholog is 100%.
Bootstrap support for D3B7E2 as seed ortholog is 100%.

Group of orthologs #1331. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.pallidum:130

Q5KPP2              	100.00%		D3AW43              	100.00%
Bootstrap support for Q5KPP2 as seed ortholog is 100%.
Bootstrap support for D3AW43 as seed ortholog is 100%.

Group of orthologs #1332. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.pallidum:130

Q5K9T5              	100.00%		D3BE09              	100.00%
Bootstrap support for Q5K9T5 as seed ortholog is 100%.
Bootstrap support for D3BE09 as seed ortholog is 100%.

Group of orthologs #1333. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.pallidum:130

Q5KMK5              	100.00%		D3BLJ3              	100.00%
Bootstrap support for Q5KMK5 as seed ortholog is 100%.
Bootstrap support for D3BLJ3 as seed ortholog is 100%.

Group of orthologs #1334. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:129

P0CO84              	100.00%		D3B645              	100.00%
Bootstrap support for P0CO84 as seed ortholog is 100%.
Bootstrap support for D3B645 as seed ortholog is 100%.

Group of orthologs #1335. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:129

Q5KBQ4              	100.00%		D3B413              	100.00%
Bootstrap support for Q5KBQ4 as seed ortholog is 100%.
Bootstrap support for D3B413 as seed ortholog is 100%.

Group of orthologs #1336. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:51

P0CR54              	100.00%		D3B9L7              	100.00%
Bootstrap support for P0CR54 as seed ortholog is 100%.
Bootstrap support for D3B9L7 as seed ortholog is 97%.

Group of orthologs #1337. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.pallidum:129

Q5KDS7              	100.00%		D3BK63              	100.00%
Bootstrap support for Q5KDS7 as seed ortholog is 100%.
Bootstrap support for D3BK63 as seed ortholog is 100%.

Group of orthologs #1338. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:87

Q5KC39              	100.00%		D3B816              	100.00%
Q5KNX2              	8.07%		D3BJC9              	19.12%
Q5KLY3              	7.47%		
Bootstrap support for Q5KC39 as seed ortholog is 100%.
Bootstrap support for D3B816 as seed ortholog is 74%.
Alternative seed ortholog is D3BHW4 (87 bits away from this cluster)

Group of orthologs #1339. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:128

Q5K7Y0              	100.00%		D3BH57              	100.00%
                    	       		D3BJZ1              	41.97%
Bootstrap support for Q5K7Y0 as seed ortholog is 100%.
Bootstrap support for D3BH57 as seed ortholog is 100%.

Group of orthologs #1340. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:128

Q5K8J8              	100.00%		D3B088              	100.00%
Bootstrap support for Q5K8J8 as seed ortholog is 100%.
Bootstrap support for D3B088 as seed ortholog is 100%.

Group of orthologs #1341. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:128

Q5KDY6              	100.00%		D3AZN4              	100.00%
Bootstrap support for Q5KDY6 as seed ortholog is 99%.
Bootstrap support for D3AZN4 as seed ortholog is 100%.

Group of orthologs #1342. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:128

Q5KBB3              	100.00%		D3BHU6              	100.00%
Bootstrap support for Q5KBB3 as seed ortholog is 100%.
Bootstrap support for D3BHU6 as seed ortholog is 100%.

Group of orthologs #1343. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.pallidum:128

Q5KCB7              	100.00%		D3BH33              	100.00%
Bootstrap support for Q5KCB7 as seed ortholog is 100%.
Bootstrap support for D3BH33 as seed ortholog is 100%.

Group of orthologs #1344. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.pallidum:127

Q5KIE3              	100.00%		D3BNB6              	100.00%
Bootstrap support for Q5KIE3 as seed ortholog is 100%.
Bootstrap support for D3BNB6 as seed ortholog is 100%.

Group of orthologs #1345. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.pallidum:127

Q5KFB3              	100.00%		D3BU92              	100.00%
Bootstrap support for Q5KFB3 as seed ortholog is 100%.
Bootstrap support for D3BU92 as seed ortholog is 100%.

Group of orthologs #1346. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:45

Q5KKN1              	100.00%		D3BRS7              	100.00%
                    	       		D3BQ27              	25.64%
                    	       		D3B667              	15.70%
Bootstrap support for Q5KKN1 as seed ortholog is 100%.
Bootstrap support for D3BRS7 as seed ortholog is 89%.

Group of orthologs #1347. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5KGT0              	100.00%		D3B214              	100.00%
Q5K977              	46.72%		
Bootstrap support for Q5KGT0 as seed ortholog is 100%.
Bootstrap support for D3B214 as seed ortholog is 100%.

Group of orthologs #1348. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

P0CM82              	100.00%		D3AWR4              	100.00%
Bootstrap support for P0CM82 as seed ortholog is 100%.
Bootstrap support for D3AWR4 as seed ortholog is 100%.

Group of orthologs #1349. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5KJE9              	100.00%		D3B2C2              	100.00%
Bootstrap support for Q5KJE9 as seed ortholog is 100%.
Bootstrap support for D3B2C2 as seed ortholog is 100%.

Group of orthologs #1350. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5K909              	100.00%		D3BL72              	100.00%
Bootstrap support for Q5K909 as seed ortholog is 100%.
Bootstrap support for D3BL72 as seed ortholog is 100%.

Group of orthologs #1351. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5KHC7              	100.00%		D3BIF2              	100.00%
Bootstrap support for Q5KHC7 as seed ortholog is 100%.
Bootstrap support for D3BIF2 as seed ortholog is 100%.

Group of orthologs #1352. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5KNA5              	100.00%		D3BHF9              	100.00%
Bootstrap support for Q5KNA5 as seed ortholog is 100%.
Bootstrap support for D3BHF9 as seed ortholog is 100%.

Group of orthologs #1353. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5KIU7              	100.00%		D3BNY6              	100.00%
Bootstrap support for Q5KIU7 as seed ortholog is 100%.
Bootstrap support for D3BNY6 as seed ortholog is 100%.

Group of orthologs #1354. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.pallidum:126

Q5KNG8              	100.00%		D3BNN1              	100.00%
Bootstrap support for Q5KNG8 as seed ortholog is 100%.
Bootstrap support for D3BNN1 as seed ortholog is 100%.

Group of orthologs #1355. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.pallidum:125

Q5K8R3              	100.00%		D3B3L9              	100.00%
Q5KK52              	9.64%		
Bootstrap support for Q5K8R3 as seed ortholog is 100%.
Bootstrap support for D3B3L9 as seed ortholog is 100%.

Group of orthologs #1356. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.pallidum:125

Q5K7N7              	100.00%		D3BV23              	100.00%
Q5KFA6              	10.22%		
Bootstrap support for Q5K7N7 as seed ortholog is 100%.
Bootstrap support for D3BV23 as seed ortholog is 100%.

Group of orthologs #1357. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.pallidum:125

Q5KQ08              	100.00%		D3BSQ5              	100.00%
                    	       		D3BJP6              	16.28%
Bootstrap support for Q5KQ08 as seed ortholog is 100%.
Bootstrap support for D3BSQ5 as seed ortholog is 100%.

Group of orthologs #1358. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.pallidum:5

Q5KB00              	100.00%		D3B2X0              	100.00%
Bootstrap support for Q5KB00 as seed ortholog is 57%.
Alternative seed ortholog is Q5KI94 (24 bits away from this cluster)
Bootstrap support for D3B2X0 as seed ortholog is 54%.
Alternative seed ortholog is D3BJI0 (5 bits away from this cluster)

Group of orthologs #1359. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.pallidum:125

P0CS10              	100.00%		D3BLD3              	100.00%
Bootstrap support for P0CS10 as seed ortholog is 100%.
Bootstrap support for D3BLD3 as seed ortholog is 100%.

Group of orthologs #1360. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:46

P0CR36              	100.00%		D3BQN3              	100.00%
Bootstrap support for P0CR36 as seed ortholog is 98%.
Bootstrap support for D3BQN3 as seed ortholog is 94%.

Group of orthologs #1361. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:124

Q5KIY8              	100.00%		D3B5E3              	100.00%
                    	       		D3BSB5              	42.86%
Bootstrap support for Q5KIY8 as seed ortholog is 100%.
Bootstrap support for D3B5E3 as seed ortholog is 100%.

Group of orthologs #1362. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:124

Q5K7B2              	100.00%		D3B1V3              	100.00%
Bootstrap support for Q5K7B2 as seed ortholog is 100%.
Bootstrap support for D3B1V3 as seed ortholog is 100%.

Group of orthologs #1363. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:51

Q5K8E1              	100.00%		D3B2G3              	100.00%
Bootstrap support for Q5K8E1 as seed ortholog is 100%.
Bootstrap support for D3B2G3 as seed ortholog is 62%.
Alternative seed ortholog is D3B807 (51 bits away from this cluster)

Group of orthologs #1364. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:124

Q5KH21              	100.00%		D3AX29              	100.00%
Bootstrap support for Q5KH21 as seed ortholog is 100%.
Bootstrap support for D3AX29 as seed ortholog is 100%.

Group of orthologs #1365. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:124

Q5KM60              	100.00%		D3B7B3              	100.00%
Bootstrap support for Q5KM60 as seed ortholog is 100%.
Bootstrap support for D3B7B3 as seed ortholog is 100%.

Group of orthologs #1366. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:124

Q5KPB1              	100.00%		D3B614              	100.00%
Bootstrap support for Q5KPB1 as seed ortholog is 100%.
Bootstrap support for D3B614 as seed ortholog is 100%.

Group of orthologs #1367. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:124

P0CQ62              	100.00%		D3BUI7              	100.00%
Bootstrap support for P0CQ62 as seed ortholog is 100%.
Bootstrap support for D3BUI7 as seed ortholog is 100%.

Group of orthologs #1368. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.pallidum:79

Q5KN44              	100.00%		D3BU77              	100.00%
Bootstrap support for Q5KN44 as seed ortholog is 100%.
Bootstrap support for D3BU77 as seed ortholog is 99%.

Group of orthologs #1369. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:123

Q5KKG2              	100.00%		D3BM60              	100.00%
Q5KDQ6              	9.70%		
Bootstrap support for Q5KKG2 as seed ortholog is 100%.
Bootstrap support for D3BM60 as seed ortholog is 100%.

Group of orthologs #1370. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:123

Q5KBB0              	100.00%		D3BGQ4              	100.00%
Bootstrap support for Q5KBB0 as seed ortholog is 100%.
Bootstrap support for D3BGQ4 as seed ortholog is 100%.

Group of orthologs #1371. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:123

Q5KKY5              	100.00%		D3B9Y5              	100.00%
Bootstrap support for Q5KKY5 as seed ortholog is 100%.
Bootstrap support for D3B9Y5 as seed ortholog is 100%.

Group of orthologs #1372. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:60

Q5KQ34              	100.00%		D3BNF1              	100.00%
Bootstrap support for Q5KQ34 as seed ortholog is 100%.
Bootstrap support for D3BNF1 as seed ortholog is 97%.

Group of orthologs #1373. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.pallidum:44

Q5KNR2              	100.00%		D3BPQ3              	100.00%
Bootstrap support for Q5KNR2 as seed ortholog is 100%.
Bootstrap support for D3BPQ3 as seed ortholog is 90%.

Group of orthologs #1374. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.pallidum:122

Q5KPP0              	100.00%		D3B9W4              	100.00%
                    	       		D3BM63              	36.65%
Bootstrap support for Q5KPP0 as seed ortholog is 100%.
Bootstrap support for D3B9W4 as seed ortholog is 100%.

Group of orthologs #1375. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.pallidum:122

Q5KJN0              	100.00%		D3AW87              	100.00%
Bootstrap support for Q5KJN0 as seed ortholog is 100%.
Bootstrap support for D3AW87 as seed ortholog is 100%.

Group of orthologs #1376. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.pallidum:27

Q5KJT6              	100.00%		D3B4R9              	100.00%
Bootstrap support for Q5KJT6 as seed ortholog is 87%.
Bootstrap support for D3B4R9 as seed ortholog is 79%.

Group of orthologs #1377. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.pallidum:122

Q5K764              	100.00%		D3BTD9              	100.00%
Bootstrap support for Q5K764 as seed ortholog is 100%.
Bootstrap support for D3BTD9 as seed ortholog is 100%.

Group of orthologs #1378. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.pallidum:122

Q5KJL6              	100.00%		D3BTV9              	100.00%
Bootstrap support for Q5KJL6 as seed ortholog is 100%.
Bootstrap support for D3BTV9 as seed ortholog is 100%.

Group of orthologs #1379. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:121

P0CP72              	100.00%		D3AWF3              	100.00%
Bootstrap support for P0CP72 as seed ortholog is 100%.
Bootstrap support for D3AWF3 as seed ortholog is 100%.

Group of orthologs #1380. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:121

Q5KDB3              	100.00%		D3AYL7              	100.00%
Bootstrap support for Q5KDB3 as seed ortholog is 100%.
Bootstrap support for D3AYL7 as seed ortholog is 100%.

Group of orthologs #1381. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:121

Q5KJ65              	100.00%		D3AYN0              	100.00%
Bootstrap support for Q5KJ65 as seed ortholog is 100%.
Bootstrap support for D3AYN0 as seed ortholog is 100%.

Group of orthologs #1382. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:121

Q5KBK4              	100.00%		D3B7S1              	100.00%
Bootstrap support for Q5KBK4 as seed ortholog is 100%.
Bootstrap support for D3B7S1 as seed ortholog is 100%.

Group of orthologs #1383. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:52

Q5KMS8              	100.00%		D3B1Q9              	100.00%
Bootstrap support for Q5KMS8 as seed ortholog is 100%.
Bootstrap support for D3B1Q9 as seed ortholog is 93%.

Group of orthologs #1384. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:121

Q5KJW9              	100.00%		D3B9J2              	100.00%
Bootstrap support for Q5KJW9 as seed ortholog is 100%.
Bootstrap support for D3B9J2 as seed ortholog is 100%.

Group of orthologs #1385. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:69

Q5KPK3              	100.00%		D3B7Y6              	100.00%
Bootstrap support for Q5KPK3 as seed ortholog is 100%.
Bootstrap support for D3B7Y6 as seed ortholog is 99%.

Group of orthologs #1386. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.pallidum:121

Q5KN73              	100.00%		D3BAU6              	100.00%
Bootstrap support for Q5KN73 as seed ortholog is 100%.
Bootstrap support for D3BAU6 as seed ortholog is 100%.

Group of orthologs #1387. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.pallidum:120

P0CO98              	100.00%		D3B1M7              	100.00%
                    	       		D3B883              	9.16%
                    	       		D3B1M4              	5.15%
Bootstrap support for P0CO98 as seed ortholog is 100%.
Bootstrap support for D3B1M7 as seed ortholog is 100%.

Group of orthologs #1388. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.pallidum:120

P0CQ26              	100.00%		D3B147              	100.00%
Bootstrap support for P0CQ26 as seed ortholog is 100%.
Bootstrap support for D3B147 as seed ortholog is 100%.

Group of orthologs #1389. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.pallidum:120

Q5KG24              	100.00%		D3AXW3              	100.00%
Bootstrap support for Q5KG24 as seed ortholog is 100%.
Bootstrap support for D3AXW3 as seed ortholog is 100%.

Group of orthologs #1390. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.pallidum:120

Q5KLM7              	100.00%		D3AXK3              	100.00%
Bootstrap support for Q5KLM7 as seed ortholog is 100%.
Bootstrap support for D3AXK3 as seed ortholog is 100%.

Group of orthologs #1391. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.pallidum:120

Q5KK99              	100.00%		D3BD80              	100.00%
Bootstrap support for Q5KK99 as seed ortholog is 100%.
Bootstrap support for D3BD80 as seed ortholog is 100%.

Group of orthologs #1392. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.pallidum:120

Q5KB03              	100.00%		D3BPZ9              	100.00%
Bootstrap support for Q5KB03 as seed ortholog is 66%.
Alternative seed ortholog is Q5K978 (19 bits away from this cluster)
Bootstrap support for D3BPZ9 as seed ortholog is 100%.

Group of orthologs #1393. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:119

Q5KNP8              	100.00%		D3BFI4              	100.00%
                    	       		D3BAQ5              	11.06%
                    	       		D3AYF1              	10.70%
Bootstrap support for Q5KNP8 as seed ortholog is 100%.
Bootstrap support for D3BFI4 as seed ortholog is 100%.

Group of orthologs #1394. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:55

Q5K9G6              	100.00%		D3B1P2              	100.00%
Bootstrap support for Q5K9G6 as seed ortholog is 100%.
Bootstrap support for D3B1P2 as seed ortholog is 97%.

Group of orthologs #1395. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:119

Q5KIA1              	100.00%		D3B056              	100.00%
Bootstrap support for Q5KIA1 as seed ortholog is 100%.
Bootstrap support for D3B056 as seed ortholog is 100%.

Group of orthologs #1396. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:119

Q5KHQ9              	100.00%		D3B8W7              	100.00%
Bootstrap support for Q5KHQ9 as seed ortholog is 100%.
Bootstrap support for D3B8W7 as seed ortholog is 100%.

Group of orthologs #1397. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:119

Q5KKM0              	100.00%		D3B814              	100.00%
Bootstrap support for Q5KKM0 as seed ortholog is 100%.
Bootstrap support for D3B814 as seed ortholog is 100%.

Group of orthologs #1398. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.pallidum:119

Q5KFD2              	100.00%		D3BRR6              	100.00%
Bootstrap support for Q5KFD2 as seed ortholog is 100%.
Bootstrap support for D3BRR6 as seed ortholog is 100%.

Group of orthologs #1399. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.pallidum:50

Q5KKB5              	100.00%		D3BUV0              	100.00%
Q5KCB6              	41.12%		
Q5KDS1              	39.55%		
Bootstrap support for Q5KKB5 as seed ortholog is 86%.
Bootstrap support for D3BUV0 as seed ortholog is 93%.

Group of orthologs #1400. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5KMI3              	100.00%		D3AW12              	100.00%
Bootstrap support for Q5KMI3 as seed ortholog is 100%.
Bootstrap support for D3AW12 as seed ortholog is 100%.

Group of orthologs #1401. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5KH63              	100.00%		D3B3X0              	100.00%
Bootstrap support for Q5KH63 as seed ortholog is 100%.
Bootstrap support for D3B3X0 as seed ortholog is 100%.

Group of orthologs #1402. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5KCX6              	100.00%		D3BB02              	100.00%
Bootstrap support for Q5KCX6 as seed ortholog is 100%.
Bootstrap support for D3BB02 as seed ortholog is 100%.

Group of orthologs #1403. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5KGD6              	100.00%		D3B8W2              	100.00%
Bootstrap support for Q5KGD6 as seed ortholog is 100%.
Bootstrap support for D3B8W2 as seed ortholog is 100%.

Group of orthologs #1404. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

P0CP08              	100.00%		D3BM04              	100.00%
Bootstrap support for P0CP08 as seed ortholog is 100%.
Bootstrap support for D3BM04 as seed ortholog is 100%.

Group of orthologs #1405. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:61

Q5KPC0              	100.00%		D3B6E4              	100.00%
Bootstrap support for Q5KPC0 as seed ortholog is 100%.
Bootstrap support for D3B6E4 as seed ortholog is 98%.

Group of orthologs #1406. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5K811              	100.00%		D3BM06              	100.00%
Bootstrap support for Q5K811 as seed ortholog is 100%.
Bootstrap support for D3BM06 as seed ortholog is 100%.

Group of orthologs #1407. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5KGT2              	100.00%		D3BHF0              	100.00%
Bootstrap support for Q5KGT2 as seed ortholog is 100%.
Bootstrap support for D3BHF0 as seed ortholog is 100%.

Group of orthologs #1408. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.pallidum:118

Q5KP79              	100.00%		D3BHL3              	100.00%
Bootstrap support for Q5KP79 as seed ortholog is 100%.
Bootstrap support for D3BHL3 as seed ortholog is 100%.

Group of orthologs #1409. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KF63              	100.00%		D3AZF8              	100.00%
Bootstrap support for Q5KF63 as seed ortholog is 100%.
Bootstrap support for D3AZF8 as seed ortholog is 100%.

Group of orthologs #1410. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:8

Q5KKF3              	100.00%		D3B2T3              	100.00%
Bootstrap support for Q5KKF3 as seed ortholog is 100%.
Bootstrap support for D3B2T3 as seed ortholog is 53%.
Alternative seed ortholog is D3B053 (8 bits away from this cluster)

Group of orthologs #1411. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KG91              	100.00%		D3BAT1              	100.00%
Bootstrap support for Q5KG91 as seed ortholog is 100%.
Bootstrap support for D3BAT1 as seed ortholog is 100%.

Group of orthologs #1412. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

P0CM06              	100.00%		D3BNF6              	100.00%
Bootstrap support for P0CM06 as seed ortholog is 100%.
Bootstrap support for D3BNF6 as seed ortholog is 100%.

Group of orthologs #1413. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:64

Q5KHV8              	100.00%		D3BFU7              	100.00%
Bootstrap support for Q5KHV8 as seed ortholog is 99%.
Bootstrap support for D3BFU7 as seed ortholog is 99%.

Group of orthologs #1414. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KFJ5              	100.00%		D3BK19              	100.00%
Bootstrap support for Q5KFJ5 as seed ortholog is 100%.
Bootstrap support for D3BK19 as seed ortholog is 100%.

Group of orthologs #1415. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KLZ3              	100.00%		D3BFD8              	100.00%
Bootstrap support for Q5KLZ3 as seed ortholog is 100%.
Bootstrap support for D3BFD8 as seed ortholog is 100%.

Group of orthologs #1416. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KD06              	100.00%		D3BPG5              	100.00%
Bootstrap support for Q5KD06 as seed ortholog is 100%.
Bootstrap support for D3BPG5 as seed ortholog is 100%.

Group of orthologs #1417. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:7

Q5KEP7              	100.00%		D3BQF9              	100.00%
Bootstrap support for Q5KEP7 as seed ortholog is 100%.
Bootstrap support for D3BQF9 as seed ortholog is 61%.
Alternative seed ortholog is D3B1Y7 (7 bits away from this cluster)

Group of orthologs #1418. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KL88              	100.00%		D3BMB1              	100.00%
Bootstrap support for Q5KL88 as seed ortholog is 100%.
Bootstrap support for D3BMB1 as seed ortholog is 100%.

Group of orthologs #1419. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.pallidum:117

Q5KLY7              	100.00%		D3BMF1              	100.00%
Bootstrap support for Q5KLY7 as seed ortholog is 100%.
Bootstrap support for D3BMF1 as seed ortholog is 100%.

Group of orthologs #1420. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KCZ9              	100.00%		D3AWK8              	100.00%
Bootstrap support for Q5KCZ9 as seed ortholog is 100%.
Bootstrap support for D3AWK8 as seed ortholog is 100%.

Group of orthologs #1421. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

P0CR44              	100.00%		D3B401              	100.00%
Bootstrap support for P0CR44 as seed ortholog is 100%.
Bootstrap support for D3B401 as seed ortholog is 100%.

Group of orthologs #1422. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KM24              	100.00%		D3BB09              	100.00%
Bootstrap support for Q5KM24 as seed ortholog is 100%.
Bootstrap support for D3BB09 as seed ortholog is 100%.

Group of orthologs #1423. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

P0CP44              	100.00%		D3BR96              	100.00%
Bootstrap support for P0CP44 as seed ortholog is 100%.
Bootstrap support for D3BR96 as seed ortholog is 100%.

Group of orthologs #1424. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KMZ6              	100.00%		D3BCL8              	100.00%
Bootstrap support for Q5KMZ6 as seed ortholog is 100%.
Bootstrap support for D3BCL8 as seed ortholog is 100%.

Group of orthologs #1425. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KH48              	100.00%		D3BJ55              	100.00%
Bootstrap support for Q5KH48 as seed ortholog is 100%.
Bootstrap support for D3BJ55 as seed ortholog is 100%.

Group of orthologs #1426. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KFB6              	100.00%		D3BLP6              	100.00%
Bootstrap support for Q5KFB6 as seed ortholog is 100%.
Bootstrap support for D3BLP6 as seed ortholog is 100%.

Group of orthologs #1427. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KI23              	100.00%		D3BM86              	100.00%
Bootstrap support for Q5KI23 as seed ortholog is 100%.
Bootstrap support for D3BM86 as seed ortholog is 100%.

Group of orthologs #1428. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KFA1              	100.00%		D3BQZ1              	100.00%
Bootstrap support for Q5KFA1 as seed ortholog is 100%.
Bootstrap support for D3BQZ1 as seed ortholog is 100%.

Group of orthologs #1429. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.pallidum:116

Q5KIN8              	100.00%		D3BTM7              	100.00%
Bootstrap support for Q5KIN8 as seed ortholog is 100%.
Bootstrap support for D3BTM7 as seed ortholog is 100%.

Group of orthologs #1430. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:115

Q5KMB2              	100.00%		D3BHJ7              	100.00%
Q5KM83              	55.47%		
Bootstrap support for Q5KMB2 as seed ortholog is 100%.
Bootstrap support for D3BHJ7 as seed ortholog is 100%.

Group of orthologs #1431. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:115

P0CP16              	100.00%		D3AZY2              	100.00%
Bootstrap support for P0CP16 as seed ortholog is 100%.
Bootstrap support for D3AZY2 as seed ortholog is 100%.

Group of orthologs #1432. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:115

P0CM78              	100.00%		D3BB69              	100.00%
Bootstrap support for P0CM78 as seed ortholog is 100%.
Bootstrap support for D3BB69 as seed ortholog is 100%.

Group of orthologs #1433. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.pallidum:115

Q5KAG7              	100.00%		D3BBA3              	100.00%
Bootstrap support for Q5KAG7 as seed ortholog is 100%.
Bootstrap support for D3BBA3 as seed ortholog is 100%.

Group of orthologs #1434. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:44

P0CP94              	100.00%		D3B699              	100.00%
                    	       		D3B696              	8.65%
Bootstrap support for P0CP94 as seed ortholog is 100%.
Bootstrap support for D3B699 as seed ortholog is 98%.

Group of orthologs #1435. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

Q5K889              	100.00%		D3BFR6              	100.00%
                    	       		D3BRT3              	15.48%
Bootstrap support for Q5K889 as seed ortholog is 100%.
Bootstrap support for D3BFR6 as seed ortholog is 100%.

Group of orthologs #1436. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

P0CM52              	100.00%		D3B5T6              	100.00%
Bootstrap support for P0CM52 as seed ortholog is 100%.
Bootstrap support for D3B5T6 as seed ortholog is 100%.

Group of orthologs #1437. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

Q5KDV9              	100.00%		D3B2Q2              	100.00%
Bootstrap support for Q5KDV9 as seed ortholog is 100%.
Bootstrap support for D3B2Q2 as seed ortholog is 100%.

Group of orthologs #1438. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:42

Q5KE11              	100.00%		D3B5T3              	100.00%
Bootstrap support for Q5KE11 as seed ortholog is 100%.
Bootstrap support for D3B5T3 as seed ortholog is 97%.

Group of orthologs #1439. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

Q5K9R1              	100.00%		D3BA93              	100.00%
Bootstrap support for Q5K9R1 as seed ortholog is 100%.
Bootstrap support for D3BA93 as seed ortholog is 100%.

Group of orthologs #1440. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

P0CO38              	100.00%		D3BH56              	100.00%
Bootstrap support for P0CO38 as seed ortholog is 100%.
Bootstrap support for D3BH56 as seed ortholog is 100%.

Group of orthologs #1441. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:25 P.pallidum:114

Q5K832              	100.00%		D3BG78              	100.00%
Bootstrap support for Q5K832 as seed ortholog is 75%.
Bootstrap support for D3BG78 as seed ortholog is 100%.

Group of orthologs #1442. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.pallidum:114

Q5KA89              	100.00%		D3BKW7              	100.00%
Bootstrap support for Q5KA89 as seed ortholog is 47%.
Alternative seed ortholog is Q5KF77 (5 bits away from this cluster)
Bootstrap support for D3BKW7 as seed ortholog is 100%.

Group of orthologs #1443. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.pallidum:56

Q5K9S7              	100.00%		D3BTH5              	100.00%
Bootstrap support for Q5K9S7 as seed ortholog is 82%.
Bootstrap support for D3BTH5 as seed ortholog is 88%.

Group of orthologs #1444. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

Q5KKD7              	100.00%		D3BKJ2              	100.00%
Bootstrap support for Q5KKD7 as seed ortholog is 100%.
Bootstrap support for D3BKJ2 as seed ortholog is 100%.

Group of orthologs #1445. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.pallidum:114

Q5KPS3              	100.00%		D3BIM6              	100.00%
Bootstrap support for Q5KPS3 as seed ortholog is 100%.
Bootstrap support for D3BIM6 as seed ortholog is 100%.

Group of orthologs #1446. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.pallidum:113

Q5KJK6              	100.00%		D3B3A3              	100.00%
Bootstrap support for Q5KJK6 as seed ortholog is 100%.
Bootstrap support for D3B3A3 as seed ortholog is 100%.

Group of orthologs #1447. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.pallidum:113

Q5KI04              	100.00%		D3B6T6              	100.00%
Bootstrap support for Q5KI04 as seed ortholog is 100%.
Bootstrap support for D3B6T6 as seed ortholog is 100%.

Group of orthologs #1448. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.pallidum:113

Q5KCP3              	100.00%		D3BBQ4              	100.00%
Bootstrap support for Q5KCP3 as seed ortholog is 100%.
Bootstrap support for D3BBQ4 as seed ortholog is 100%.

Group of orthologs #1449. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.pallidum:113

Q5KBG5              	100.00%		D3BGE0              	100.00%
Bootstrap support for Q5KBG5 as seed ortholog is 100%.
Bootstrap support for D3BGE0 as seed ortholog is 100%.

Group of orthologs #1450. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.pallidum:113

Q5KCA8              	100.00%		D3BL22              	100.00%
Bootstrap support for Q5KCA8 as seed ortholog is 100%.
Bootstrap support for D3BL22 as seed ortholog is 100%.

Group of orthologs #1451. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.pallidum:113

Q5KN65              	100.00%		D3BK76              	100.00%
Bootstrap support for Q5KN65 as seed ortholog is 100%.
Bootstrap support for D3BK76 as seed ortholog is 100%.

Group of orthologs #1452. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.pallidum:113

Q5KJT1              	100.00%		D3BU31              	100.00%
Bootstrap support for Q5KJT1 as seed ortholog is 99%.
Bootstrap support for D3BU31 as seed ortholog is 100%.

Group of orthologs #1453. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.pallidum:112

Q5K802              	100.00%		D3B5M3              	100.00%
Bootstrap support for Q5K802 as seed ortholog is 100%.
Bootstrap support for D3B5M3 as seed ortholog is 100%.

Group of orthologs #1454. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.pallidum:112

Q5KF06              	100.00%		D3B5H1              	100.00%
Bootstrap support for Q5KF06 as seed ortholog is 100%.
Bootstrap support for D3B5H1 as seed ortholog is 100%.

Group of orthologs #1455. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.pallidum:112

Q5KPS7              	100.00%		D3B429              	100.00%
Bootstrap support for Q5KPS7 as seed ortholog is 100%.
Bootstrap support for D3B429 as seed ortholog is 100%.

Group of orthologs #1456. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.pallidum:112

P0CN98              	100.00%		D3BTM8              	100.00%
Bootstrap support for P0CN98 as seed ortholog is 100%.
Bootstrap support for D3BTM8 as seed ortholog is 100%.

Group of orthologs #1457. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:16 P.pallidum:23

Q5KK38              	100.00%		D3BNH8              	100.00%
Bootstrap support for Q5KK38 as seed ortholog is 56%.
Alternative seed ortholog is Q5KDH5 (16 bits away from this cluster)
Bootstrap support for D3BNH8 as seed ortholog is 61%.
Alternative seed ortholog is D3B428 (23 bits away from this cluster)

Group of orthologs #1458. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.pallidum:112

Q5KIV0              	100.00%		D3BTD4              	100.00%
Bootstrap support for Q5KIV0 as seed ortholog is 88%.
Bootstrap support for D3BTD4 as seed ortholog is 100%.

Group of orthologs #1459. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5KIU3              	100.00%		D3BEQ7              	100.00%
                    	       		D3B149              	6.98%
Bootstrap support for Q5KIU3 as seed ortholog is 100%.
Bootstrap support for D3BEQ7 as seed ortholog is 100%.

Group of orthologs #1460. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5KBU2              	100.00%		D3BUI9              	100.00%
                    	       		D3BCF4              	22.62%
Bootstrap support for Q5KBU2 as seed ortholog is 100%.
Bootstrap support for D3BUI9 as seed ortholog is 100%.

Group of orthologs #1461. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5KKU9              	100.00%		D3B044              	100.00%
Bootstrap support for Q5KKU9 as seed ortholog is 100%.
Bootstrap support for D3B044 as seed ortholog is 100%.

Group of orthologs #1462. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5KL84              	100.00%		D3B0P0              	100.00%
Bootstrap support for Q5KL84 as seed ortholog is 100%.
Bootstrap support for D3B0P0 as seed ortholog is 100%.

Group of orthologs #1463. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5K7Y5              	100.00%		D3BI19              	100.00%
Bootstrap support for Q5K7Y5 as seed ortholog is 100%.
Bootstrap support for D3BI19 as seed ortholog is 100%.

Group of orthologs #1464. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5K8A3              	100.00%		D3BL98              	100.00%
Bootstrap support for Q5K8A3 as seed ortholog is 100%.
Bootstrap support for D3BL98 as seed ortholog is 100%.

Group of orthologs #1465. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5KI05              	100.00%		D3BCK9              	100.00%
Bootstrap support for Q5KI05 as seed ortholog is 100%.
Bootstrap support for D3BCK9 as seed ortholog is 100%.

Group of orthologs #1466. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.pallidum:1

Q5KQ41              	100.00%		D3B7N4              	100.00%
Bootstrap support for Q5KQ41 as seed ortholog is 87%.
Bootstrap support for D3B7N4 as seed ortholog is 52%.
Alternative seed ortholog is D3BM15 (1 bits away from this cluster)

Group of orthologs #1467. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:111

Q5KDG1              	100.00%		D3BNV6              	100.00%
Bootstrap support for Q5KDG1 as seed ortholog is 100%.
Bootstrap support for D3BNV6 as seed ortholog is 100%.

Group of orthologs #1468. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.pallidum:57

Q5KMP9              	100.00%		D3BS64              	100.00%
Bootstrap support for Q5KMP9 as seed ortholog is 100%.
Bootstrap support for D3BS64 as seed ortholog is 99%.

Group of orthologs #1469. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.pallidum:110

P0CN06              	100.00%		D3BAI5              	100.00%
                    	       		D3B1I6              	9.21%
Bootstrap support for P0CN06 as seed ortholog is 100%.
Bootstrap support for D3BAI5 as seed ortholog is 100%.

Group of orthologs #1470. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.pallidum:110

P0CS54              	100.00%		D3AW79              	100.00%
Bootstrap support for P0CS54 as seed ortholog is 100%.
Bootstrap support for D3AW79 as seed ortholog is 100%.

Group of orthologs #1471. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.pallidum:110

Q5KIV2              	100.00%		D3B1K7              	100.00%
Bootstrap support for Q5KIV2 as seed ortholog is 100%.
Bootstrap support for D3B1K7 as seed ortholog is 100%.

Group of orthologs #1472. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.pallidum:109

Q5K6U5              	100.00%		D3BAK4              	100.00%
Q5KN56              	18.19%		
Bootstrap support for Q5K6U5 as seed ortholog is 100%.
Bootstrap support for D3BAK4 as seed ortholog is 100%.

Group of orthologs #1473. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.pallidum:109

Q5KMJ1              	100.00%		D3BSZ3              	100.00%
                    	       		D3BFK9              	33.72%
Bootstrap support for Q5KMJ1 as seed ortholog is 100%.
Bootstrap support for D3BSZ3 as seed ortholog is 100%.

Group of orthologs #1474. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.pallidum:109

P0CM98              	100.00%		D3BDM3              	100.00%
Bootstrap support for P0CM98 as seed ortholog is 100%.
Bootstrap support for D3BDM3 as seed ortholog is 100%.

Group of orthologs #1475. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.pallidum:109

Q5KFB5              	100.00%		D3B6Y0              	100.00%
Bootstrap support for Q5KFB5 as seed ortholog is 100%.
Bootstrap support for D3B6Y0 as seed ortholog is 100%.

Group of orthologs #1476. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.pallidum:109

Q5KH20              	100.00%		D3B5X9              	100.00%
Bootstrap support for Q5KH20 as seed ortholog is 100%.
Bootstrap support for D3B5X9 as seed ortholog is 100%.

Group of orthologs #1477. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.pallidum:109

P0CM26              	100.00%		D3BJI9              	100.00%
Bootstrap support for P0CM26 as seed ortholog is 100%.
Bootstrap support for D3BJI9 as seed ortholog is 100%.

Group of orthologs #1478. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.pallidum:108

Q5KJM9              	100.00%		D3B4B0              	100.00%
                    	       		D3B458              	41.48%
Bootstrap support for Q5KJM9 as seed ortholog is 100%.
Bootstrap support for D3B4B0 as seed ortholog is 100%.

Group of orthologs #1479. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.pallidum:108

Q5KGD0              	100.00%		D3B5L6              	100.00%
Bootstrap support for Q5KGD0 as seed ortholog is 100%.
Bootstrap support for D3B5L6 as seed ortholog is 100%.

Group of orthologs #1480. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.pallidum:108

Q5KC17              	100.00%		D3BB97              	100.00%
Bootstrap support for Q5KC17 as seed ortholog is 100%.
Bootstrap support for D3BB97 as seed ortholog is 100%.

Group of orthologs #1481. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.pallidum:108

Q5KNW5              	100.00%		D3B0Y6              	100.00%
Bootstrap support for Q5KNW5 as seed ortholog is 100%.
Bootstrap support for D3B0Y6 as seed ortholog is 100%.

Group of orthologs #1482. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.pallidum:108

Q5KF26              	100.00%		D3BSJ3              	100.00%
Bootstrap support for Q5KF26 as seed ortholog is 100%.
Bootstrap support for D3BSJ3 as seed ortholog is 100%.

Group of orthologs #1483. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.pallidum:108

Q5KBY8              	100.00%		D3BVK2              	100.00%
Bootstrap support for Q5KBY8 as seed ortholog is 100%.
Bootstrap support for D3BVK2 as seed ortholog is 100%.

Group of orthologs #1484. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.pallidum:107

Q5KAN8              	100.00%		D3AXR3              	100.00%
Q5KP67              	5.48%		
Bootstrap support for Q5KAN8 as seed ortholog is 100%.
Bootstrap support for D3AXR3 as seed ortholog is 100%.

Group of orthologs #1485. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.pallidum:107

Q5KIW3              	100.00%		D3AWN2              	100.00%
Bootstrap support for Q5KIW3 as seed ortholog is 100%.
Bootstrap support for D3AWN2 as seed ortholog is 100%.

Group of orthologs #1486. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.pallidum:47

P0CO00              	100.00%		D3BCX0              	100.00%
Bootstrap support for P0CO00 as seed ortholog is 100%.
Bootstrap support for D3BCX0 as seed ortholog is 95%.

Group of orthologs #1487. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.pallidum:107

P0CP40              	100.00%		D3BDY1              	100.00%
Bootstrap support for P0CP40 as seed ortholog is 100%.
Bootstrap support for D3BDY1 as seed ortholog is 100%.

Group of orthologs #1488. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:39 P.pallidum:106

Q5KLQ6              	100.00%		D3AWC2              	100.00%
                    	       		D3BED4              	22.97%
Bootstrap support for Q5KLQ6 as seed ortholog is 81%.
Bootstrap support for D3AWC2 as seed ortholog is 100%.

Group of orthologs #1489. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KC44              	100.00%		D3AWT7              	100.00%
Bootstrap support for Q5KC44 as seed ortholog is 100%.
Bootstrap support for D3AWT7 as seed ortholog is 100%.

Group of orthologs #1490. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KBE1              	100.00%		D3B662              	100.00%
Bootstrap support for Q5KBE1 as seed ortholog is 100%.
Bootstrap support for D3B662 as seed ortholog is 100%.

Group of orthologs #1491. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KEJ8              	100.00%		D3B4X6              	100.00%
Bootstrap support for Q5KEJ8 as seed ortholog is 100%.
Bootstrap support for D3B4X6 as seed ortholog is 100%.

Group of orthologs #1492. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KFS4              	100.00%		D3B4U0              	100.00%
Bootstrap support for Q5KFS4 as seed ortholog is 100%.
Bootstrap support for D3B4U0 as seed ortholog is 100%.

Group of orthologs #1493. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5K7E8              	100.00%		D3BEK8              	100.00%
Bootstrap support for Q5K7E8 as seed ortholog is 100%.
Bootstrap support for D3BEK8 as seed ortholog is 100%.

Group of orthologs #1494. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KM03              	100.00%		D3B2U9              	100.00%
Bootstrap support for Q5KM03 as seed ortholog is 100%.
Bootstrap support for D3B2U9 as seed ortholog is 100%.

Group of orthologs #1495. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KM48              	100.00%		D3B416              	100.00%
Bootstrap support for Q5KM48 as seed ortholog is 100%.
Bootstrap support for D3B416 as seed ortholog is 100%.

Group of orthologs #1496. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KEF1              	100.00%		D3BBD7              	100.00%
Bootstrap support for Q5KEF1 as seed ortholog is 100%.
Bootstrap support for D3BBD7 as seed ortholog is 100%.

Group of orthologs #1497. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KGL2              	100.00%		D3BAG7              	100.00%
Bootstrap support for Q5KGL2 as seed ortholog is 100%.
Bootstrap support for D3BAG7 as seed ortholog is 100%.

Group of orthologs #1498. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KB42              	100.00%		D3BFK8              	100.00%
Bootstrap support for Q5KB42 as seed ortholog is 100%.
Bootstrap support for D3BFK8 as seed ortholog is 100%.

Group of orthologs #1499. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KH59              	100.00%		D3BGW6              	100.00%
Bootstrap support for Q5KH59 as seed ortholog is 100%.
Bootstrap support for D3BGW6 as seed ortholog is 100%.

Group of orthologs #1500. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5K9V6              	100.00%		D3BTN8              	100.00%
Bootstrap support for Q5K9V6 as seed ortholog is 100%.
Bootstrap support for D3BTN8 as seed ortholog is 100%.

Group of orthologs #1501. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.pallidum:106

Q5KMD7              	100.00%		D3BKR7              	100.00%
Bootstrap support for Q5KMD7 as seed ortholog is 100%.
Bootstrap support for D3BKR7 as seed ortholog is 100%.

Group of orthologs #1502. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.pallidum:105

Q5KMY4              	100.00%		D3BGR2              	100.00%
Bootstrap support for Q5KMY4 as seed ortholog is 100%.
Bootstrap support for D3BGR2 as seed ortholog is 100%.

Group of orthologs #1503. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.pallidum:105

Q5KJU3              	100.00%		D3BRH7              	100.00%
Bootstrap support for Q5KJU3 as seed ortholog is 100%.
Bootstrap support for D3BRH7 as seed ortholog is 100%.

Group of orthologs #1504. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5K8G5              	100.00%		D3BIZ5              	100.00%
                    	       		D3AVM4              	7.49%
Bootstrap support for Q5K8G5 as seed ortholog is 100%.
Bootstrap support for D3BIZ5 as seed ortholog is 100%.

Group of orthologs #1505. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5K6V7              	100.00%		D3B500              	100.00%
Bootstrap support for Q5K6V7 as seed ortholog is 100%.
Bootstrap support for D3B500 as seed ortholog is 100%.

Group of orthologs #1506. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5KD03              	100.00%		D3B247              	100.00%
Bootstrap support for Q5KD03 as seed ortholog is 100%.
Bootstrap support for D3B247 as seed ortholog is 100%.

Group of orthologs #1507. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5KNE0              	100.00%		D3AZB6              	100.00%
Bootstrap support for Q5KNE0 as seed ortholog is 100%.
Bootstrap support for D3AZB6 as seed ortholog is 100%.

Group of orthologs #1508. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5KB06              	100.00%		D3BSQ1              	100.00%
Bootstrap support for Q5KB06 as seed ortholog is 100%.
Bootstrap support for D3BSQ1 as seed ortholog is 100%.

Group of orthologs #1509. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5KNF1              	100.00%		D3BIL7              	100.00%
Bootstrap support for Q5KNF1 as seed ortholog is 100%.
Bootstrap support for D3BIL7 as seed ortholog is 100%.

Group of orthologs #1510. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5KH04              	100.00%		D3BR79              	100.00%
Bootstrap support for Q5KH04 as seed ortholog is 100%.
Bootstrap support for D3BR79 as seed ortholog is 100%.

Group of orthologs #1511. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:45

Q5KF95              	100.00%		D3BUZ0              	100.00%
Bootstrap support for Q5KF95 as seed ortholog is 100%.
Bootstrap support for D3BUZ0 as seed ortholog is 96%.

Group of orthologs #1512. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.pallidum:104

Q5KJF0              	100.00%		D3BSN4              	100.00%
Bootstrap support for Q5KJF0 as seed ortholog is 100%.
Bootstrap support for D3BSN4 as seed ortholog is 100%.

Group of orthologs #1513. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.pallidum:104

Q5KJW6              	100.00%		D3BT12              	100.00%
Bootstrap support for Q5KJW6 as seed ortholog is 96%.
Bootstrap support for D3BT12 as seed ortholog is 100%.

Group of orthologs #1514. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.pallidum:2

Q5KP88              	100.00%		D3BTW1              	100.00%
                    	       		D3B556              	14.80%
Bootstrap support for Q5KP88 as seed ortholog is 100%.
Bootstrap support for D3BTW1 as seed ortholog is 54%.
Alternative seed ortholog is D3BH37 (2 bits away from this cluster)

Group of orthologs #1515. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.pallidum:103

Q5KGC2              	100.00%		D3B0K7              	100.00%
Bootstrap support for Q5KGC2 as seed ortholog is 100%.
Bootstrap support for D3B0K7 as seed ortholog is 100%.

Group of orthologs #1516. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.pallidum:103

Q5KP48              	100.00%		D3B9P1              	100.00%
Bootstrap support for Q5KP48 as seed ortholog is 100%.
Bootstrap support for D3B9P1 as seed ortholog is 100%.

Group of orthologs #1517. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.pallidum:103

Q5KFI3              	100.00%		D3BKE3              	100.00%
Bootstrap support for Q5KFI3 as seed ortholog is 100%.
Bootstrap support for D3BKE3 as seed ortholog is 100%.

Group of orthologs #1518. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.pallidum:103

Q5KHA7              	100.00%		D3BKG6              	100.00%
Bootstrap support for Q5KHA7 as seed ortholog is 100%.
Bootstrap support for D3BKG6 as seed ortholog is 100%.

Group of orthologs #1519. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:102

Q5K9R0              	100.00%		D3AZW3              	100.00%
Bootstrap support for Q5K9R0 as seed ortholog is 100%.
Bootstrap support for D3AZW3 as seed ortholog is 100%.

Group of orthologs #1520. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:102

Q5KMJ7              	100.00%		D3B6F9              	100.00%
Bootstrap support for Q5KMJ7 as seed ortholog is 100%.
Bootstrap support for D3B6F9 as seed ortholog is 100%.

Group of orthologs #1521. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.pallidum:102

Q5KM72              	100.00%		D3B7X8              	100.00%
Bootstrap support for Q5KM72 as seed ortholog is 74%.
Alternative seed ortholog is Q5K8W8 (20 bits away from this cluster)
Bootstrap support for D3B7X8 as seed ortholog is 100%.

Group of orthologs #1522. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:102

Q5K9C9              	100.00%		D3BQ25              	100.00%
Bootstrap support for Q5K9C9 as seed ortholog is 100%.
Bootstrap support for D3BQ25 as seed ortholog is 100%.

Group of orthologs #1523. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:47

Q5KCV8              	100.00%		D3BQ01              	100.00%
Bootstrap support for Q5KCV8 as seed ortholog is 100%.
Bootstrap support for D3BQ01 as seed ortholog is 98%.

Group of orthologs #1524. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:102

Q5KMA3              	100.00%		D3BK47              	100.00%
Bootstrap support for Q5KMA3 as seed ortholog is 100%.
Bootstrap support for D3BK47 as seed ortholog is 100%.

Group of orthologs #1525. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.pallidum:102

Q5KFS9              	100.00%		D3BUH5              	100.00%
Bootstrap support for Q5KFS9 as seed ortholog is 100%.
Bootstrap support for D3BUH5 as seed ortholog is 100%.

Group of orthologs #1526. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:101

Q5KIQ9              	100.00%		D3AWQ9              	100.00%
                    	       		D3AXJ3              	44.47%
                    	       		D3B9K6              	35.88%
                    	       		D3B5W2              	35.69%
                    	       		D3B9G5              	34.92%
                    	       		D3B6T0              	16.60%
Bootstrap support for Q5KIQ9 as seed ortholog is 100%.
Bootstrap support for D3AWQ9 as seed ortholog is 100%.

Group of orthologs #1527. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:48

Q5KGH8              	100.00%		D3BA68              	100.00%
Q5KGH9              	75.21%		
Q5KGH7              	45.73%		
Bootstrap support for Q5KGH8 as seed ortholog is 100%.
Bootstrap support for D3BA68 as seed ortholog is 88%.

Group of orthologs #1528. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:101

Q5KHX0              	100.00%		D3B538              	100.00%
Bootstrap support for Q5KHX0 as seed ortholog is 100%.
Bootstrap support for D3B538 as seed ortholog is 100%.

Group of orthologs #1529. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:3 P.pallidum:4

Q5KJJ5              	100.00%		D3BA70              	100.00%
Bootstrap support for Q5KJJ5 as seed ortholog is 81%.
Bootstrap support for D3BA70 as seed ortholog is 78%.

Group of orthologs #1530. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:101

Q5K9E5              	100.00%		D3BP66              	100.00%
Bootstrap support for Q5K9E5 as seed ortholog is 100%.
Bootstrap support for D3BP66 as seed ortholog is 100%.

Group of orthologs #1531. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:101

Q5KA82              	100.00%		D3BUW4              	100.00%
Bootstrap support for Q5KA82 as seed ortholog is 100%.
Bootstrap support for D3BUW4 as seed ortholog is 100%.

Group of orthologs #1532. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:101

Q5KJP0              	100.00%		D3BQ09              	100.00%
Bootstrap support for Q5KJP0 as seed ortholog is 100%.
Bootstrap support for D3BQ09 as seed ortholog is 100%.

Group of orthologs #1533. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.pallidum:101

Q5KF11              	100.00%		D3BVL0              	100.00%
Bootstrap support for Q5KF11 as seed ortholog is 100%.
Bootstrap support for D3BVL0 as seed ortholog is 100%.

Group of orthologs #1534. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.pallidum:100

Q5KMC2              	100.00%		D3AXJ9              	100.00%
Bootstrap support for Q5KMC2 as seed ortholog is 100%.
Bootstrap support for D3AXJ9 as seed ortholog is 100%.

Group of orthologs #1535. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.pallidum:100

Q5KI13              	100.00%		D3BN95              	100.00%
Bootstrap support for Q5KI13 as seed ortholog is 100%.
Bootstrap support for D3BN95 as seed ortholog is 100%.

Group of orthologs #1536. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:1

Q5KN75              	100.00%		D3BKK8              	100.00%
Q5KGY3              	9.21%		D3BI36              	12.22%
                    	       		D3B9V6              	9.09%
                    	       		D3BVD2              	9.09%
                    	       		D3B8P4              	6.89%
                    	       		D3AYF4              	5.89%
                    	       		D3BE24              	5.76%
                    	       		D3BFV7              	5.70%
                    	       		D3BUS9              	5.26%
                    	       		D3BL69              	5.01%
Bootstrap support for Q5KN75 as seed ortholog is 100%.
Bootstrap support for D3BKK8 as seed ortholog is 76%.

Group of orthologs #1537. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:41

Q5KNQ6              	100.00%		D3B3P0              	100.00%
                    	       		D3BLB6              	59.01%
                    	       		D3B642              	34.78%
                    	       		D3BLB5              	24.22%
Bootstrap support for Q5KNQ6 as seed ortholog is 100%.
Bootstrap support for D3B3P0 as seed ortholog is 98%.

Group of orthologs #1538. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.pallidum:59

Q5KMX6              	100.00%		D3B559              	100.00%
Q5KEJ3              	45.35%		
Bootstrap support for Q5KMX6 as seed ortholog is 81%.
Bootstrap support for D3B559 as seed ortholog is 89%.

Group of orthologs #1539. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KA95              	100.00%		D3B759              	100.00%
Bootstrap support for Q5KA95 as seed ortholog is 100%.
Bootstrap support for D3B759 as seed ortholog is 100%.

Group of orthologs #1540. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KHI2              	100.00%		D3B134              	100.00%
Bootstrap support for Q5KHI2 as seed ortholog is 100%.
Bootstrap support for D3B134 as seed ortholog is 100%.

Group of orthologs #1541. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KNW0              	100.00%		D3AXP1              	100.00%
Bootstrap support for Q5KNW0 as seed ortholog is 100%.
Bootstrap support for D3AXP1 as seed ortholog is 100%.

Group of orthologs #1542. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

P0CL90              	100.00%		D3BMB4              	100.00%
Bootstrap support for P0CL90 as seed ortholog is 100%.
Bootstrap support for D3BMB4 as seed ortholog is 100%.

Group of orthologs #1543. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

P0CL96              	100.00%		D3BPE9              	100.00%
Bootstrap support for P0CL96 as seed ortholog is 100%.
Bootstrap support for D3BPE9 as seed ortholog is 100%.

Group of orthologs #1544. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KE72              	100.00%		D3BGV1              	100.00%
Bootstrap support for Q5KE72 as seed ortholog is 100%.
Bootstrap support for D3BGV1 as seed ortholog is 100%.

Group of orthologs #1545. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KIS8              	100.00%		D3BF71              	100.00%
Bootstrap support for Q5KIS8 as seed ortholog is 100%.
Bootstrap support for D3BF71 as seed ortholog is 100%.

Group of orthologs #1546. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.pallidum:5

Q5KIS6              	100.00%		D3BFX1              	100.00%
Bootstrap support for Q5KIS6 as seed ortholog is 95%.
Bootstrap support for D3BFX1 as seed ortholog is 99%.

Group of orthologs #1547. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KDX1              	100.00%		D3BPV0              	100.00%
Bootstrap support for Q5KDX1 as seed ortholog is 100%.
Bootstrap support for D3BPV0 as seed ortholog is 100%.

Group of orthologs #1548. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KBR9              	100.00%		D3BV55              	100.00%
Bootstrap support for Q5KBR9 as seed ortholog is 100%.
Bootstrap support for D3BV55 as seed ortholog is 100%.

Group of orthologs #1549. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:7

Q5KGP8              	100.00%		D3BSQ2              	100.00%
Bootstrap support for Q5KGP8 as seed ortholog is 95%.
Bootstrap support for D3BSQ2 as seed ortholog is 39%.
Alternative seed ortholog is D3B503 (7 bits away from this cluster)

Group of orthologs #1550. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.pallidum:99

Q5KFG9              	100.00%		D3BUT5              	100.00%
Bootstrap support for Q5KFG9 as seed ortholog is 100%.
Bootstrap support for D3BUT5 as seed ortholog is 100%.

Group of orthologs #1551. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:98

P0CM90              	100.00%		D3BAR1              	100.00%
Bootstrap support for P0CM90 as seed ortholog is 100%.
Bootstrap support for D3BAR1 as seed ortholog is 100%.

Group of orthologs #1552. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:98

P0CR84              	100.00%		D3BGP2              	100.00%
Bootstrap support for P0CR84 as seed ortholog is 100%.
Bootstrap support for D3BGP2 as seed ortholog is 100%.

Group of orthologs #1553. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:98

Q5K786              	100.00%		D3BLM4              	100.00%
Bootstrap support for Q5K786 as seed ortholog is 100%.
Bootstrap support for D3BLM4 as seed ortholog is 100%.

Group of orthologs #1554. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:98

Q5KIG9              	100.00%		D3BJ79              	100.00%
Bootstrap support for Q5KIG9 as seed ortholog is 100%.
Bootstrap support for D3BJ79 as seed ortholog is 100%.

Group of orthologs #1555. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:98

Q5KFN9              	100.00%		D3BNU3              	100.00%
Bootstrap support for Q5KFN9 as seed ortholog is 100%.
Bootstrap support for D3BNU3 as seed ortholog is 100%.

Group of orthologs #1556. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.pallidum:98

Q5KLF1              	100.00%		D3BM32              	100.00%
Bootstrap support for Q5KLF1 as seed ortholog is 100%.
Bootstrap support for D3BM32 as seed ortholog is 100%.

Group of orthologs #1557. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.pallidum:97

Q5KH91              	100.00%		D3B6J8              	100.00%
Q5KKB6              	54.80%		D3BUI2              	45.81%
                    	       		D3AY58              	42.50%
                    	       		D3BA42              	18.41%
                    	       		D3B1E7              	12.82%
Bootstrap support for Q5KH91 as seed ortholog is 59%.
Alternative seed ortholog is Q5KEH9 (5 bits away from this cluster)
Bootstrap support for D3B6J8 as seed ortholog is 100%.

Group of orthologs #1558. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KFL4              	100.00%		D3BSP7              	100.00%
                    	       		D3BV17              	15.36%
                    	       		D3AWV8              	6.34%
                    	       		D3BP79              	5.50%
Bootstrap support for Q5KFL4 as seed ortholog is 100%.
Bootstrap support for D3BSP7 as seed ortholog is 100%.

Group of orthologs #1559. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

P0CS02              	100.00%		D3BJ34              	100.00%
P0CS04              	100.00%		
Bootstrap support for P0CS02 as seed ortholog is 100%.
Bootstrap support for P0CS04 as seed ortholog is 100%.
Bootstrap support for D3BJ34 as seed ortholog is 100%.

Group of orthologs #1560. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KDJ4              	100.00%		D3AY13              	100.00%
Bootstrap support for Q5KDJ4 as seed ortholog is 100%.
Bootstrap support for D3AY13 as seed ortholog is 100%.

Group of orthologs #1561. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KC58              	100.00%		D3B2C3              	100.00%
Bootstrap support for Q5KC58 as seed ortholog is 100%.
Bootstrap support for D3B2C3 as seed ortholog is 100%.

Group of orthologs #1562. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5K8P8              	100.00%		D3B733              	100.00%
Bootstrap support for Q5K8P8 as seed ortholog is 100%.
Bootstrap support for D3B733 as seed ortholog is 100%.

Group of orthologs #1563. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5K865              	100.00%		D3B863              	100.00%
Bootstrap support for Q5K865 as seed ortholog is 100%.
Bootstrap support for D3B863 as seed ortholog is 100%.

Group of orthologs #1564. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KPH9              	100.00%		D3AZW6              	100.00%
Bootstrap support for Q5KPH9 as seed ortholog is 100%.
Bootstrap support for D3AZW6 as seed ortholog is 100%.

Group of orthologs #1565. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KM67              	100.00%		D3B2Q5              	100.00%
Bootstrap support for Q5KM67 as seed ortholog is 100%.
Bootstrap support for D3B2Q5 as seed ortholog is 100%.

Group of orthologs #1566. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KMD8              	100.00%		D3B6U5              	100.00%
Bootstrap support for Q5KMD8 as seed ortholog is 100%.
Bootstrap support for D3B6U5 as seed ortholog is 100%.

Group of orthologs #1567. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KFQ4              	100.00%		D3BER1              	100.00%
Bootstrap support for Q5KFQ4 as seed ortholog is 100%.
Bootstrap support for D3BER1 as seed ortholog is 100%.

Group of orthologs #1568. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:21

Q5KNI7              	100.00%		D3BDB6              	100.00%
Bootstrap support for Q5KNI7 as seed ortholog is 100%.
Bootstrap support for D3BDB6 as seed ortholog is 86%.

Group of orthologs #1569. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KGZ9              	100.00%		D3BV18              	100.00%
Bootstrap support for Q5KGZ9 as seed ortholog is 100%.
Bootstrap support for D3BV18 as seed ortholog is 100%.

Group of orthologs #1570. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.pallidum:97

Q5KN25              	100.00%		D3BUG2              	100.00%
Bootstrap support for Q5KN25 as seed ortholog is 100%.
Bootstrap support for D3BUG2 as seed ortholog is 100%.

Group of orthologs #1571. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KKG8              	100.00%		D3AZW0              	100.00%
Bootstrap support for Q5KKG8 as seed ortholog is 100%.
Bootstrap support for D3AZW0 as seed ortholog is 100%.

Group of orthologs #1572. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KKE2              	100.00%		D3B4D7              	100.00%
Bootstrap support for Q5KKE2 as seed ortholog is 100%.
Bootstrap support for D3B4D7 as seed ortholog is 100%.

Group of orthologs #1573. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5K9N0              	100.00%		D3BPW7              	100.00%
Bootstrap support for Q5K9N0 as seed ortholog is 100%.
Bootstrap support for D3BPW7 as seed ortholog is 100%.

Group of orthologs #1574. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KDU6              	100.00%		D3BP72              	100.00%
Bootstrap support for Q5KDU6 as seed ortholog is 100%.
Bootstrap support for D3BP72 as seed ortholog is 100%.

Group of orthologs #1575. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KBQ0              	100.00%		D3BTD8              	100.00%
Bootstrap support for Q5KBQ0 as seed ortholog is 100%.
Bootstrap support for D3BTD8 as seed ortholog is 100%.

Group of orthologs #1576. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KBG4              	100.00%		D3BTL0              	100.00%
Bootstrap support for Q5KBG4 as seed ortholog is 100%.
Bootstrap support for D3BTL0 as seed ortholog is 100%.

Group of orthologs #1577. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KFF0              	100.00%		D3BU56              	100.00%
Bootstrap support for Q5KFF0 as seed ortholog is 100%.
Bootstrap support for D3BU56 as seed ortholog is 100%.

Group of orthologs #1578. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.pallidum:96

Q5KKH4              	100.00%		D3BQT7              	100.00%
Bootstrap support for Q5KKH4 as seed ortholog is 100%.
Bootstrap support for D3BQT7 as seed ortholog is 100%.

Group of orthologs #1579. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.pallidum:39

Q5KLI6              	100.00%		D3BHM8              	100.00%
Q5KFL8              	13.13%		
Bootstrap support for Q5KLI6 as seed ortholog is 100%.
Bootstrap support for D3BHM8 as seed ortholog is 73%.
Alternative seed ortholog is D3BUV5 (39 bits away from this cluster)

Group of orthologs #1580. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.pallidum:95

Q5KE48              	100.00%		D3B6K8              	100.00%
Bootstrap support for Q5KE48 as seed ortholog is 100%.
Bootstrap support for D3B6K8 as seed ortholog is 100%.

Group of orthologs #1581. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.pallidum:35

P0CR78              	100.00%		D3BIR9              	100.00%
Bootstrap support for P0CR78 as seed ortholog is 100%.
Bootstrap support for D3BIR9 as seed ortholog is 88%.

Group of orthologs #1582. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.pallidum:95

P0CR80              	100.00%		D3BJ38              	100.00%
Bootstrap support for P0CR80 as seed ortholog is 100%.
Bootstrap support for D3BJ38 as seed ortholog is 100%.

Group of orthologs #1583. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.pallidum:94

Q5K8L2              	100.00%		D3B3P3              	100.00%
                    	       		D3AVL3              	6.94%
                    	       		D3AVQ8              	6.15%
Bootstrap support for Q5K8L2 as seed ortholog is 91%.
Bootstrap support for D3B3P3 as seed ortholog is 100%.

Group of orthologs #1584. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:94

Q5KCY0              	100.00%		D3AXV8              	100.00%
Bootstrap support for Q5KCY0 as seed ortholog is 100%.
Bootstrap support for D3AXV8 as seed ortholog is 100%.

Group of orthologs #1585. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.pallidum:94

Q5KIE8              	100.00%		D3AY14              	100.00%
Bootstrap support for Q5KIE8 as seed ortholog is 97%.
Bootstrap support for D3AY14 as seed ortholog is 100%.

Group of orthologs #1586. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:94

Q5KN02              	100.00%		D3B031              	100.00%
Bootstrap support for Q5KN02 as seed ortholog is 100%.
Bootstrap support for D3B031 as seed ortholog is 100%.

Group of orthologs #1587. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:94

Q5KJ00              	100.00%		D3B957              	100.00%
Bootstrap support for Q5KJ00 as seed ortholog is 100%.
Bootstrap support for D3B957 as seed ortholog is 100%.

Group of orthologs #1588. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:94

Q5KK70              	100.00%		D3BFH1              	100.00%
Bootstrap support for Q5KK70 as seed ortholog is 100%.
Bootstrap support for D3BFH1 as seed ortholog is 100%.

Group of orthologs #1589. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.pallidum:94

Q5KJS1              	100.00%		D3BR34              	100.00%
Bootstrap support for Q5KJS1 as seed ortholog is 100%.
Bootstrap support for D3BR34 as seed ortholog is 100%.

Group of orthologs #1590. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:93

Q5KAI3              	100.00%		D3B6V9              	100.00%
Bootstrap support for Q5KAI3 as seed ortholog is 100%.
Bootstrap support for D3B6V9 as seed ortholog is 100%.

Group of orthologs #1591. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:93

Q5KD64              	100.00%		D3BC80              	100.00%
Bootstrap support for Q5KD64 as seed ortholog is 100%.
Bootstrap support for D3BC80 as seed ortholog is 100%.

Group of orthologs #1592. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:93

Q5KCT8              	100.00%		D3BEN2              	100.00%
Bootstrap support for Q5KCT8 as seed ortholog is 100%.
Bootstrap support for D3BEN2 as seed ortholog is 100%.

Group of orthologs #1593. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.pallidum:93

Q5KL25              	100.00%		D3BE55              	100.00%
Bootstrap support for Q5KL25 as seed ortholog is 100%.
Bootstrap support for D3BE55 as seed ortholog is 100%.

Group of orthologs #1594. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5KMM2              	100.00%		D3BJG7              	100.00%
                    	       		D3B155              	5.68%
Bootstrap support for Q5KMM2 as seed ortholog is 100%.
Bootstrap support for D3BJG7 as seed ortholog is 100%.

Group of orthologs #1595. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.pallidum:48

Q5K8A9              	100.00%		D3B0J7              	100.00%
Bootstrap support for Q5K8A9 as seed ortholog is 98%.
Bootstrap support for D3B0J7 as seed ortholog is 99%.

Group of orthologs #1596. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:23

Q5K8Y4              	100.00%		D3B3R2              	100.00%
Bootstrap support for Q5K8Y4 as seed ortholog is 100%.
Bootstrap support for D3B3R2 as seed ortholog is 69%.
Alternative seed ortholog is D3BAY3 (23 bits away from this cluster)

Group of orthologs #1597. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

P0CO24              	100.00%		D3B811              	100.00%
Bootstrap support for P0CO24 as seed ortholog is 100%.
Bootstrap support for D3B811 as seed ortholog is 100%.

Group of orthologs #1598. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

P0CS74              	100.00%		D3BGL9              	100.00%
Bootstrap support for P0CS74 as seed ortholog is 100%.
Bootstrap support for D3BGL9 as seed ortholog is 100%.

Group of orthologs #1599. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5KF15              	100.00%		D3BH04              	100.00%
Bootstrap support for Q5KF15 as seed ortholog is 100%.
Bootstrap support for D3BH04 as seed ortholog is 100%.

Group of orthologs #1600. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5KKD6              	100.00%		D3BC41              	100.00%
Bootstrap support for Q5KKD6 as seed ortholog is 100%.
Bootstrap support for D3BC41 as seed ortholog is 100%.

Group of orthologs #1601. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5K9S1              	100.00%		D3BMA2              	100.00%
Bootstrap support for Q5K9S1 as seed ortholog is 100%.
Bootstrap support for D3BMA2 as seed ortholog is 100%.

Group of orthologs #1602. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5KAX4              	100.00%		D3BPR9              	100.00%
Bootstrap support for Q5KAX4 as seed ortholog is 100%.
Bootstrap support for D3BPR9 as seed ortholog is 100%.

Group of orthologs #1603. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5KL37              	100.00%		D3BH73              	100.00%
Bootstrap support for Q5KL37 as seed ortholog is 100%.
Bootstrap support for D3BH73 as seed ortholog is 100%.

Group of orthologs #1604. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.pallidum:92

Q5KMC3              	100.00%		D3BHP3              	100.00%
Bootstrap support for Q5KMC3 as seed ortholog is 100%.
Bootstrap support for D3BHP3 as seed ortholog is 100%.

Group of orthologs #1605. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.pallidum:49

Q5KN63              	100.00%		D3BUE2              	100.00%
Bootstrap support for Q5KN63 as seed ortholog is 99%.
Bootstrap support for D3BUE2 as seed ortholog is 99%.

Group of orthologs #1606. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:34

Q5KK19              	100.00%		D3BC34              	100.00%
                    	       		D3BC35              	45.31%
                    	       		D3B4T3              	32.67%
                    	       		D3B1H8              	21.66%
                    	       		D3BBW1              	17.87%
                    	       		D3BBW2              	17.57%
                    	       		D3B1Z2              	17.57%
                    	       		D3BSP2              	14.80%
                    	       		D3BR82              	14.80%
                    	       		D3AZN6              	14.68%
                    	       		D3BSP5              	14.26%
                    	       		D3BR59              	13.96%
                    	       		D3BR81              	13.72%
                    	       		D3BHN0              	12.58%
                    	       		D3BVQ0              	12.39%
                    	       		D3AZN7              	11.31%
                    	       		D3BGN7              	8.84%
                    	       		D3BDA4              	8.36%
                    	       		D3B1N0              	8.24%
                    	       		D3BRS5              	7.28%
Bootstrap support for Q5KK19 as seed ortholog is 100%.
Bootstrap support for D3BC34 as seed ortholog is 77%.

Group of orthologs #1607. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:19

Q5K9F0              	100.00%		D3B4D1              	100.00%
                    	       		D3B469              	83.03%
                    	       		D3BJ29              	61.93%
                    	       		D3AVZ4              	29.82%
Bootstrap support for Q5K9F0 as seed ortholog is 100%.
Bootstrap support for D3B4D1 as seed ortholog is 72%.
Alternative seed ortholog is D3AYG7 (19 bits away from this cluster)

Group of orthologs #1608. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

Q5KDM5              	100.00%		D3B0U5              	100.00%
Q5KDM8              	90.96%		
Bootstrap support for Q5KDM5 as seed ortholog is 100%.
Bootstrap support for D3B0U5 as seed ortholog is 100%.

Group of orthologs #1609. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

Q5KHA3              	100.00%		D3BGS2              	100.00%
                    	       		D3BQZ9              	7.41%
Bootstrap support for Q5KHA3 as seed ortholog is 100%.
Bootstrap support for D3BGS2 as seed ortholog is 100%.

Group of orthologs #1610. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

Q5K8K6              	100.00%		D3AVN0              	100.00%
Bootstrap support for Q5K8K6 as seed ortholog is 100%.
Bootstrap support for D3AVN0 as seed ortholog is 100%.

Group of orthologs #1611. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

Q5K9N9              	100.00%		D3B912              	100.00%
Bootstrap support for Q5K9N9 as seed ortholog is 100%.
Bootstrap support for D3B912 as seed ortholog is 100%.

Group of orthologs #1612. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:14

Q5KA72              	100.00%		D3B8Q0              	100.00%
Bootstrap support for Q5KA72 as seed ortholog is 100%.
Bootstrap support for D3B8Q0 as seed ortholog is 68%.
Alternative seed ortholog is D3BK99 (14 bits away from this cluster)

Group of orthologs #1613. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:27

Q5KCS0              	100.00%		D3B7X6              	100.00%
Bootstrap support for Q5KCS0 as seed ortholog is 100%.
Bootstrap support for D3B7X6 as seed ortholog is 91%.

Group of orthologs #1614. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

P0CM28              	100.00%		D3BFU3              	100.00%
Bootstrap support for P0CM28 as seed ortholog is 100%.
Bootstrap support for D3BFU3 as seed ortholog is 100%.

Group of orthologs #1615. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

Q5K8A6              	100.00%		D3BTS9              	100.00%
Bootstrap support for Q5K8A6 as seed ortholog is 100%.
Bootstrap support for D3BTS9 as seed ortholog is 100%.

Group of orthologs #1616. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:15

Q5KP02              	100.00%		D3BHK9              	100.00%
Bootstrap support for Q5KP02 as seed ortholog is 100%.
Bootstrap support for D3BHK9 as seed ortholog is 59%.
Alternative seed ortholog is D3BUH2 (15 bits away from this cluster)

Group of orthologs #1617. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.pallidum:91

Q5KKF8              	100.00%		D3BS21              	100.00%
Bootstrap support for Q5KKF8 as seed ortholog is 100%.
Bootstrap support for D3BS21 as seed ortholog is 100%.

Group of orthologs #1618. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.pallidum:90

Q5KME4              	100.00%		D3AYP4              	100.00%
Bootstrap support for Q5KME4 as seed ortholog is 100%.
Bootstrap support for D3AYP4 as seed ortholog is 100%.

Group of orthologs #1619. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.pallidum:90

Q5KD44              	100.00%		D3B8X0              	100.00%
Bootstrap support for Q5KD44 as seed ortholog is 100%.
Bootstrap support for D3B8X0 as seed ortholog is 100%.

Group of orthologs #1620. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.pallidum:90

Q5KLA0              	100.00%		D3BD55              	100.00%
Bootstrap support for Q5KLA0 as seed ortholog is 100%.
Bootstrap support for D3BD55 as seed ortholog is 100%.

Group of orthologs #1621. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KNL9              	100.00%		D3AY03              	100.00%
Q5KCW8              	10.65%		D3BTZ5              	25.03%
Bootstrap support for Q5KNL9 as seed ortholog is 100%.
Bootstrap support for D3AY03 as seed ortholog is 100%.

Group of orthologs #1622. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:39 P.pallidum:31

P0CN72              	100.00%		D3AWD8              	100.00%
Bootstrap support for P0CN72 as seed ortholog is 95%.
Bootstrap support for D3AWD8 as seed ortholog is 90%.

Group of orthologs #1623. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

P0CM86              	100.00%		D3B7Y4              	100.00%
Bootstrap support for P0CM86 as seed ortholog is 100%.
Bootstrap support for D3B7Y4 as seed ortholog is 100%.

Group of orthologs #1624. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KLX9              	100.00%		D3B5B5              	100.00%
Bootstrap support for Q5KLX9 as seed ortholog is 100%.
Bootstrap support for D3B5B5 as seed ortholog is 100%.

Group of orthologs #1625. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KKZ0              	100.00%		D3BA49              	100.00%
Bootstrap support for Q5KKZ0 as seed ortholog is 100%.
Bootstrap support for D3BA49 as seed ortholog is 100%.

Group of orthologs #1626. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KND0              	100.00%		D3BF90              	100.00%
Bootstrap support for Q5KND0 as seed ortholog is 100%.
Bootstrap support for D3BF90 as seed ortholog is 100%.

Group of orthologs #1627. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KK26              	100.00%		D3BII5              	100.00%
Bootstrap support for Q5KK26 as seed ortholog is 100%.
Bootstrap support for D3BII5 as seed ortholog is 100%.

Group of orthologs #1628. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KJZ1              	100.00%		D3BL70              	100.00%
Bootstrap support for Q5KJZ1 as seed ortholog is 100%.
Bootstrap support for D3BL70 as seed ortholog is 100%.

Group of orthologs #1629. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KK14              	100.00%		D3BR37              	100.00%
Bootstrap support for Q5KK14 as seed ortholog is 100%.
Bootstrap support for D3BR37 as seed ortholog is 100%.

Group of orthologs #1630. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.pallidum:89

Q5KP46              	100.00%		D3BV29              	100.00%
Bootstrap support for Q5KP46 as seed ortholog is 100%.
Bootstrap support for D3BV29 as seed ortholog is 100%.

Group of orthologs #1631. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.pallidum:88

Q5K719              	100.00%		D3B4Y1              	100.00%
                    	       		D3B1R8              	13.10%
                    	       		D3BL06              	8.59%
Bootstrap support for Q5K719 as seed ortholog is 100%.
Bootstrap support for D3B4Y1 as seed ortholog is 100%.

Group of orthologs #1632. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.pallidum:88

Q5K8Z9              	100.00%		D3AWZ9              	100.00%
Bootstrap support for Q5K8Z9 as seed ortholog is 100%.
Bootstrap support for D3AWZ9 as seed ortholog is 100%.

Group of orthologs #1633. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.pallidum:88

Q5KNW9              	100.00%		D3AXH0              	100.00%
Bootstrap support for Q5KNW9 as seed ortholog is 100%.
Bootstrap support for D3AXH0 as seed ortholog is 100%.

Group of orthologs #1634. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.pallidum:88

Q5K6U4              	100.00%		D3BRL9              	100.00%
Bootstrap support for Q5K6U4 as seed ortholog is 100%.
Bootstrap support for D3BRL9 as seed ortholog is 100%.

Group of orthologs #1635. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.pallidum:88

Q5KM63              	100.00%		D3BE02              	100.00%
Bootstrap support for Q5KM63 as seed ortholog is 100%.
Bootstrap support for D3BE02 as seed ortholog is 100%.

Group of orthologs #1636. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5K7Z6              	100.00%		D3B6K0              	100.00%
                    	       		D3BQN4              	16.39%
Bootstrap support for Q5K7Z6 as seed ortholog is 100%.
Bootstrap support for D3B6K0 as seed ortholog is 100%.

Group of orthologs #1637. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5KNG3              	100.00%		D3AYW7              	100.00%
                    	       		D3BUA0              	5.44%
Bootstrap support for Q5KNG3 as seed ortholog is 100%.
Bootstrap support for D3AYW7 as seed ortholog is 100%.

Group of orthologs #1638. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5KEB8              	100.00%		D3AZU2              	100.00%
Bootstrap support for Q5KEB8 as seed ortholog is 100%.
Bootstrap support for D3AZU2 as seed ortholog is 100%.

Group of orthologs #1639. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5KMY6              	100.00%		D3AXF0              	100.00%
Bootstrap support for Q5KMY6 as seed ortholog is 100%.
Bootstrap support for D3AXF0 as seed ortholog is 100%.

Group of orthologs #1640. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5KCE1              	100.00%		D3B7B2              	100.00%
Bootstrap support for Q5KCE1 as seed ortholog is 100%.
Bootstrap support for D3B7B2 as seed ortholog is 100%.

Group of orthologs #1641. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5KJY3              	100.00%		D3B4F8              	100.00%
Bootstrap support for Q5KJY3 as seed ortholog is 100%.
Bootstrap support for D3B4F8 as seed ortholog is 100%.

Group of orthologs #1642. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5K6Y2              	100.00%		D3BPI0              	100.00%
Bootstrap support for Q5K6Y2 as seed ortholog is 100%.
Bootstrap support for D3BPI0 as seed ortholog is 100%.

Group of orthologs #1643. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.pallidum:87

Q5KPT2              	100.00%		D3BQ71              	100.00%
Bootstrap support for Q5KPT2 as seed ortholog is 100%.
Bootstrap support for D3BQ71 as seed ortholog is 100%.

Group of orthologs #1644. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.pallidum:87

Q5KLG1              	100.00%		D3BV52              	100.00%
Bootstrap support for Q5KLG1 as seed ortholog is 77%.
Bootstrap support for D3BV52 as seed ortholog is 100%.

Group of orthologs #1645. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.pallidum:86

Q5KM01              	100.00%		D3BKB3              	100.00%
Q5KGK0              	5.59%		
Bootstrap support for Q5KM01 as seed ortholog is 85%.
Bootstrap support for D3BKB3 as seed ortholog is 100%.

Group of orthologs #1646. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:86

Q5K6W6              	100.00%		D3B233              	100.00%
Bootstrap support for Q5K6W6 as seed ortholog is 100%.
Bootstrap support for D3B233 as seed ortholog is 100%.

Group of orthologs #1647. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:86

Q5KL91              	100.00%		D3B6T9              	100.00%
Bootstrap support for Q5KL91 as seed ortholog is 100%.
Bootstrap support for D3B6T9 as seed ortholog is 100%.

Group of orthologs #1648. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:86

Q5KIZ3              	100.00%		D3B9S7              	100.00%
Bootstrap support for Q5KIZ3 as seed ortholog is 100%.
Bootstrap support for D3B9S7 as seed ortholog is 100%.

Group of orthologs #1649. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.pallidum:86

Q5KHX8              	100.00%		D3BU58              	100.00%
Bootstrap support for Q5KHX8 as seed ortholog is 100%.
Bootstrap support for D3BU58 as seed ortholog is 100%.

Group of orthologs #1650. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KDI7              	100.00%		D3AWT1              	100.00%
                    	       		D3BF39              	40.46%
                    	       		D3AWS9              	37.17%
Bootstrap support for Q5KDI7 as seed ortholog is 100%.
Bootstrap support for D3AWT1 as seed ortholog is 100%.

Group of orthologs #1651. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KDK9              	100.00%		D3B4X3              	100.00%
Bootstrap support for Q5KDK9 as seed ortholog is 100%.
Bootstrap support for D3B4X3 as seed ortholog is 100%.

Group of orthologs #1652. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KK06              	100.00%		D3B0Z6              	100.00%
Bootstrap support for Q5KK06 as seed ortholog is 100%.
Bootstrap support for D3B0Z6 as seed ortholog is 100%.

Group of orthologs #1653. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KH70              	100.00%		D3BE01              	100.00%
Bootstrap support for Q5KH70 as seed ortholog is 100%.
Bootstrap support for D3BE01 as seed ortholog is 100%.

Group of orthologs #1654. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KKF2              	100.00%		D3BF56              	100.00%
Bootstrap support for Q5KKF2 as seed ortholog is 100%.
Bootstrap support for D3BF56 as seed ortholog is 100%.

Group of orthologs #1655. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KI51              	100.00%		D3BK43              	100.00%
Bootstrap support for Q5KI51 as seed ortholog is 100%.
Bootstrap support for D3BK43 as seed ortholog is 100%.

Group of orthologs #1656. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KMP8              	100.00%		D3BM23              	100.00%
Bootstrap support for Q5KMP8 as seed ortholog is 100%.
Bootstrap support for D3BM23 as seed ortholog is 100%.

Group of orthologs #1657. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.pallidum:85

Q5KMD5              	100.00%		D3BUS7              	100.00%
Bootstrap support for Q5KMD5 as seed ortholog is 100%.
Bootstrap support for D3BUS7 as seed ortholog is 100%.

Group of orthologs #1658. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KMX0              	100.00%		D3BHC6              	100.00%
Q5KJN2              	39.78%		
Q5K8N5              	6.93%		
Bootstrap support for Q5KMX0 as seed ortholog is 100%.
Bootstrap support for D3BHC6 as seed ortholog is 100%.

Group of orthologs #1659. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:4 P.pallidum:84

Q5KHE7              	100.00%		D3AVR2              	100.00%
Q5KEI5              	40.06%		
Bootstrap support for Q5KHE7 as seed ortholog is 56%.
Alternative seed ortholog is Q5KFH1 (4 bits away from this cluster)
Bootstrap support for D3AVR2 as seed ortholog is 100%.

Group of orthologs #1660. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KGC7              	100.00%		D3AWC8              	100.00%
Bootstrap support for Q5KGC7 as seed ortholog is 100%.
Bootstrap support for D3AWC8 as seed ortholog is 100%.

Group of orthologs #1661. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

P0CN52              	100.00%		D3BFN4              	100.00%
Bootstrap support for P0CN52 as seed ortholog is 100%.
Bootstrap support for D3BFN4 as seed ortholog is 100%.

Group of orthologs #1662. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KAB9              	100.00%		D3BCT9              	100.00%
Bootstrap support for Q5KAB9 as seed ortholog is 100%.
Bootstrap support for D3BCT9 as seed ortholog is 100%.

Group of orthologs #1663. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KAA8              	100.00%		D3BGD7              	100.00%
Bootstrap support for Q5KAA8 as seed ortholog is 100%.
Bootstrap support for D3BGD7 as seed ortholog is 100%.

Group of orthologs #1664. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KPR6              	100.00%		D3B4Z3              	100.00%
Bootstrap support for Q5KPR6 as seed ortholog is 100%.
Bootstrap support for D3B4Z3 as seed ortholog is 100%.

Group of orthologs #1665. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KP70              	100.00%		D3BDA8              	100.00%
Bootstrap support for Q5KP70 as seed ortholog is 100%.
Bootstrap support for D3BDA8 as seed ortholog is 100%.

Group of orthologs #1666. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KKY4              	100.00%		D3BGK9              	100.00%
Bootstrap support for Q5KKY4 as seed ortholog is 100%.
Bootstrap support for D3BGK9 as seed ortholog is 100%.

Group of orthologs #1667. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.pallidum:84

Q5KCS9              	100.00%		D3BST7              	100.00%
Bootstrap support for Q5KCS9 as seed ortholog is 100%.
Bootstrap support for D3BST7 as seed ortholog is 100%.

Group of orthologs #1668. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.pallidum:84

Q5KL47              	100.00%		D3BMH3              	100.00%
Bootstrap support for Q5KL47 as seed ortholog is 72%.
Alternative seed ortholog is Q5KP11 (1 bits away from this cluster)
Bootstrap support for D3BMH3 as seed ortholog is 100%.

Group of orthologs #1669. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.pallidum:83

Q5KHK2              	100.00%		D3BID0              	100.00%
                    	       		D3BAF7              	10.73%
Bootstrap support for Q5KHK2 as seed ortholog is 100%.
Bootstrap support for D3BID0 as seed ortholog is 100%.

Group of orthologs #1670. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.pallidum:83

P0CR88              	100.00%		D3BFK4              	100.00%
Bootstrap support for P0CR88 as seed ortholog is 100%.
Bootstrap support for D3BFK4 as seed ortholog is 100%.

Group of orthologs #1671. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.pallidum:83

P0CR20              	100.00%		D3BQY5              	100.00%
Bootstrap support for P0CR20 as seed ortholog is 100%.
Bootstrap support for D3BQY5 as seed ortholog is 100%.

Group of orthologs #1672. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.pallidum:83

Q5KL63              	100.00%		D3BDL6              	100.00%
Bootstrap support for Q5KL63 as seed ortholog is 65%.
Alternative seed ortholog is Q5KN41 (15 bits away from this cluster)
Bootstrap support for D3BDL6 as seed ortholog is 100%.

Group of orthologs #1673. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.pallidum:82

Q5KJH4              	100.00%		D3B5P9              	100.00%
Q5KJH3              	17.95%		
Bootstrap support for Q5KJH4 as seed ortholog is 100%.
Bootstrap support for D3B5P9 as seed ortholog is 100%.

Group of orthologs #1674. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.pallidum:82

Q5KBR3              	100.00%		D3B637              	100.00%
Bootstrap support for Q5KBR3 as seed ortholog is 100%.
Bootstrap support for D3B637 as seed ortholog is 100%.

Group of orthologs #1675. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.pallidum:82

Q5K801              	100.00%		D3BR85              	100.00%
Bootstrap support for Q5K801 as seed ortholog is 100%.
Bootstrap support for D3BR85 as seed ortholog is 100%.

Group of orthologs #1676. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.pallidum:82

Q5K8D9              	100.00%		D3BU32              	100.00%
Bootstrap support for Q5K8D9 as seed ortholog is 100%.
Bootstrap support for D3BU32 as seed ortholog is 100%.

Group of orthologs #1677. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.pallidum:82

Q5KEY6              	100.00%		D3BNC7              	100.00%
Bootstrap support for Q5KEY6 as seed ortholog is 100%.
Bootstrap support for D3BNC7 as seed ortholog is 100%.

Group of orthologs #1678. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.pallidum:81

Q5KCK8              	100.00%		D3BAH1              	100.00%
Bootstrap support for Q5KCK8 as seed ortholog is 100%.
Bootstrap support for D3BAH1 as seed ortholog is 100%.

Group of orthologs #1679. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.pallidum:81

Q5KL56              	100.00%		D3BD34              	100.00%
Bootstrap support for Q5KL56 as seed ortholog is 100%.
Bootstrap support for D3BD34 as seed ortholog is 100%.

Group of orthologs #1680. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.pallidum:25

Q5KIE5              	100.00%		D3BHV2              	100.00%
Bootstrap support for Q5KIE5 as seed ortholog is 93%.
Bootstrap support for D3BHV2 as seed ortholog is 92%.

Group of orthologs #1681. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.pallidum:81

Q5KC84              	100.00%		D3BUP0              	100.00%
Bootstrap support for Q5KC84 as seed ortholog is 100%.
Bootstrap support for D3BUP0 as seed ortholog is 100%.

Group of orthologs #1682. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.pallidum:81

Q5KLG3              	100.00%		D3BUI8              	100.00%
Bootstrap support for Q5KLG3 as seed ortholog is 100%.
Bootstrap support for D3BUI8 as seed ortholog is 100%.

Group of orthologs #1683. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:80

Q5KHB8              	100.00%		D3BR00              	100.00%
Q5K7D6              	21.26%		D3BR01              	44.38%
Bootstrap support for Q5KHB8 as seed ortholog is 100%.
Bootstrap support for D3BR00 as seed ortholog is 100%.

Group of orthologs #1684. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.pallidum:3

Q5KE49              	100.00%		D3B9I0              	100.00%
                    	       		D3B630              	10.61%
Bootstrap support for Q5KE49 as seed ortholog is 64%.
Alternative seed ortholog is Q5KFJ1 (11 bits away from this cluster)
Bootstrap support for D3B9I0 as seed ortholog is 52%.
Alternative seed ortholog is D3AXC7 (3 bits away from this cluster)

Group of orthologs #1685. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:80

Q5KDS9              	100.00%		D3AX80              	100.00%
Bootstrap support for Q5KDS9 as seed ortholog is 100%.
Bootstrap support for D3AX80 as seed ortholog is 100%.

Group of orthologs #1686. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:80

Q5KGS2              	100.00%		D3AWA8              	100.00%
Bootstrap support for Q5KGS2 as seed ortholog is 100%.
Bootstrap support for D3AWA8 as seed ortholog is 100%.

Group of orthologs #1687. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:80

Q5KKG0              	100.00%		D3BDH2              	100.00%
Bootstrap support for Q5KKG0 as seed ortholog is 100%.
Bootstrap support for D3BDH2 as seed ortholog is 100%.

Group of orthologs #1688. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:80

Q5K970              	100.00%		D3BS03              	100.00%
Bootstrap support for Q5K970 as seed ortholog is 100%.
Bootstrap support for D3BS03 as seed ortholog is 100%.

Group of orthologs #1689. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.pallidum:80

Q5KMK6              	100.00%		D3BVK7              	100.00%
Bootstrap support for Q5KMK6 as seed ortholog is 100%.
Bootstrap support for D3BVK7 as seed ortholog is 100%.

Group of orthologs #1690. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

P0CP28              	100.00%		D3B326              	100.00%
                    	       		D3B330              	56.31%
                    	       		D3B327              	46.60%
                    	       		D3AWG1              	7.28%
Bootstrap support for P0CP28 as seed ortholog is 100%.
Bootstrap support for D3B326 as seed ortholog is 100%.

Group of orthologs #1691. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.pallidum:26

Q5KPB4              	100.00%		D3BME2              	100.00%
                    	       		D3B2W1              	19.18%
Bootstrap support for Q5KPB4 as seed ortholog is 92%.
Bootstrap support for D3BME2 as seed ortholog is 80%.

Group of orthologs #1692. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

Q5KF36              	100.00%		D3B0P5              	100.00%
Bootstrap support for Q5KF36 as seed ortholog is 100%.
Bootstrap support for D3B0P5 as seed ortholog is 100%.

Group of orthologs #1693. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

Q5KEV6              	100.00%		D3B560              	100.00%
Bootstrap support for Q5KEV6 as seed ortholog is 100%.
Bootstrap support for D3B560 as seed ortholog is 100%.

Group of orthologs #1694. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

Q5KM41              	100.00%		D3B126              	100.00%
Bootstrap support for Q5KM41 as seed ortholog is 100%.
Bootstrap support for D3B126 as seed ortholog is 100%.

Group of orthologs #1695. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

Q5KB94              	100.00%		D3BEC4              	100.00%
Bootstrap support for Q5KB94 as seed ortholog is 100%.
Bootstrap support for D3BEC4 as seed ortholog is 100%.

Group of orthologs #1696. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

Q5KPH4              	100.00%		D3B3Q0              	100.00%
Bootstrap support for Q5KPH4 as seed ortholog is 100%.
Bootstrap support for D3B3Q0 as seed ortholog is 100%.

Group of orthologs #1697. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.pallidum:79

Q5K788              	100.00%		D3BKH8              	100.00%
Bootstrap support for Q5K788 as seed ortholog is 100%.
Bootstrap support for D3BKH8 as seed ortholog is 100%.

Group of orthologs #1698. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:10 P.pallidum:79

Q5KFN1              	100.00%		D3BH66              	100.00%
Bootstrap support for Q5KFN1 as seed ortholog is 68%.
Alternative seed ortholog is Q5KFD1 (10 bits away from this cluster)
Bootstrap support for D3BH66 as seed ortholog is 100%.

Group of orthologs #1699. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

Q5KC60              	100.00%		D3AZN0              	100.00%
                    	       		D3BTR5              	100.00%
                    	       		D3BEK7              	11.57%
Bootstrap support for Q5KC60 as seed ortholog is 100%.
Bootstrap support for D3AZN0 as seed ortholog is 100%.
Bootstrap support for D3BTR5 as seed ortholog is 100%.

Group of orthologs #1700. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

Q5KDF9              	100.00%		D3BAA5              	100.00%
Q5KQ97              	21.29%		
Bootstrap support for Q5KDF9 as seed ortholog is 100%.
Bootstrap support for D3BAA5 as seed ortholog is 100%.

Group of orthologs #1701. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

Q5KPM7              	100.00%		D3AVN1              	100.00%
Bootstrap support for Q5KPM7 as seed ortholog is 100%.
Bootstrap support for D3AVN1 as seed ortholog is 100%.

Group of orthologs #1702. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

Q5KDU3              	100.00%		D3B5L1              	100.00%
Bootstrap support for Q5KDU3 as seed ortholog is 100%.
Bootstrap support for D3B5L1 as seed ortholog is 100%.

Group of orthologs #1703. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

Q5KEW7              	100.00%		D3BE00              	100.00%
Bootstrap support for Q5KEW7 as seed ortholog is 100%.
Bootstrap support for D3BE00 as seed ortholog is 100%.

Group of orthologs #1704. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

P0CP06              	100.00%		D3BN29              	100.00%
Bootstrap support for P0CP06 as seed ortholog is 100%.
Bootstrap support for D3BN29 as seed ortholog is 100%.

Group of orthologs #1705. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.pallidum:78

Q5KDU5              	100.00%		D3BI07              	100.00%
Bootstrap support for Q5KDU5 as seed ortholog is 100%.
Bootstrap support for D3BI07 as seed ortholog is 100%.

Group of orthologs #1706. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KG67              	100.00%		D3B9L6              	100.00%
Q5KN28              	5.56%		
Bootstrap support for Q5KG67 as seed ortholog is 100%.
Bootstrap support for D3B9L6 as seed ortholog is 100%.

Group of orthologs #1707. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:3

P0CR42              	100.00%		D3B6G5              	100.00%
Bootstrap support for P0CR42 as seed ortholog is 100%.
Bootstrap support for D3B6G5 as seed ortholog is 50%.
Alternative seed ortholog is D3AW66 (3 bits away from this cluster)

Group of orthologs #1708. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5K9P1              	100.00%		D3B4J9              	100.00%
Bootstrap support for Q5K9P1 as seed ortholog is 100%.
Bootstrap support for D3B4J9 as seed ortholog is 100%.

Group of orthologs #1709. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KBI3              	100.00%		D3B410              	100.00%
Bootstrap support for Q5KBI3 as seed ortholog is 100%.
Bootstrap support for D3B410 as seed ortholog is 100%.

Group of orthologs #1710. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KCL5              	100.00%		D3BF07              	100.00%
Bootstrap support for Q5KCL5 as seed ortholog is 100%.
Bootstrap support for D3BF07 as seed ortholog is 100%.

Group of orthologs #1711. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KFF8              	100.00%		D3BCT7              	100.00%
Bootstrap support for Q5KFF8 as seed ortholog is 100%.
Bootstrap support for D3BCT7 as seed ortholog is 100%.

Group of orthologs #1712. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5K7S4              	100.00%		D3BKK9              	100.00%
Bootstrap support for Q5K7S4 as seed ortholog is 100%.
Bootstrap support for D3BKK9 as seed ortholog is 100%.

Group of orthologs #1713. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KG78              	100.00%		D3BFR7              	100.00%
Bootstrap support for Q5KG78 as seed ortholog is 100%.
Bootstrap support for D3BFR7 as seed ortholog is 100%.

Group of orthologs #1714. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KGD9              	100.00%		D3BHQ4              	100.00%
Bootstrap support for Q5KGD9 as seed ortholog is 100%.
Bootstrap support for D3BHQ4 as seed ortholog is 100%.

Group of orthologs #1715. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KA70              	100.00%		D3BP71              	100.00%
Bootstrap support for Q5KA70 as seed ortholog is 100%.
Bootstrap support for D3BP71 as seed ortholog is 100%.

Group of orthologs #1716. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KBX9              	100.00%		D3BU38              	100.00%
Bootstrap support for Q5KBX9 as seed ortholog is 100%.
Bootstrap support for D3BU38 as seed ortholog is 100%.

Group of orthologs #1717. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.pallidum:77

Q5KNI8              	100.00%		D3BQB1              	100.00%
Bootstrap support for Q5KNI8 as seed ortholog is 100%.
Bootstrap support for D3BQB1 as seed ortholog is 100%.

Group of orthologs #1718. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5KI30              	100.00%		D3AVK7              	100.00%
Q5KI56              	6.67%		
Bootstrap support for Q5KI30 as seed ortholog is 100%.
Bootstrap support for D3AVK7 as seed ortholog is 100%.

Group of orthologs #1719. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5KDW7              	100.00%		D3B8Y2              	100.00%
                    	       		D3BBM2              	5.25%
Bootstrap support for Q5KDW7 as seed ortholog is 100%.
Bootstrap support for D3B8Y2 as seed ortholog is 100%.

Group of orthologs #1720. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5K7F8              	100.00%		D3AZP3              	100.00%
Bootstrap support for Q5K7F8 as seed ortholog is 100%.
Bootstrap support for D3AZP3 as seed ortholog is 100%.

Group of orthologs #1721. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5KHY4              	100.00%		D3AZG3              	100.00%
Bootstrap support for Q5KHY4 as seed ortholog is 100%.
Bootstrap support for D3AZG3 as seed ortholog is 100%.

Group of orthologs #1722. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5KIJ9              	100.00%		D3AZR0              	100.00%
Bootstrap support for Q5KIJ9 as seed ortholog is 100%.
Bootstrap support for D3AZR0 as seed ortholog is 100%.

Group of orthologs #1723. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5KLF0              	100.00%		D3B641              	100.00%
Bootstrap support for Q5KLF0 as seed ortholog is 100%.
Bootstrap support for D3B641 as seed ortholog is 100%.

Group of orthologs #1724. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:32

Q5KL85              	100.00%		D3BI32              	100.00%
Bootstrap support for Q5KL85 as seed ortholog is 100%.
Bootstrap support for D3BI32 as seed ortholog is 98%.

Group of orthologs #1725. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.pallidum:76

Q5KL80              	100.00%		D3BLV2              	100.00%
Bootstrap support for Q5KL80 as seed ortholog is 100%.
Bootstrap support for D3BLV2 as seed ortholog is 100%.

Group of orthologs #1726. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:75

Q07801              	100.00%		D3B2M2              	100.00%
                    	       		D3B6I5              	22.33%
Bootstrap support for Q07801 as seed ortholog is 100%.
Bootstrap support for D3B2M2 as seed ortholog is 100%.

Group of orthologs #1727. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:75

Q5KLE8              	100.00%		D3AVQ4              	100.00%
Bootstrap support for Q5KLE8 as seed ortholog is 100%.
Bootstrap support for D3AVQ4 as seed ortholog is 100%.

Group of orthologs #1728. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:75

Q5KN72              	100.00%		D3B4H6              	100.00%
Bootstrap support for Q5KN72 as seed ortholog is 100%.
Bootstrap support for D3B4H6 as seed ortholog is 100%.

Group of orthologs #1729. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.pallidum:75

Q5KL55              	100.00%		D3BKH4              	100.00%
Bootstrap support for Q5KL55 as seed ortholog is 100%.
Bootstrap support for D3BKH4 as seed ortholog is 100%.

Group of orthologs #1730. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.pallidum:74

Q5KKS6              	100.00%		D3BGZ6              	100.00%
Q5KBE7              	49.85%		
Q5K9T2              	21.91%		
Q5KBM4              	19.60%		
Q5KA87              	19.10%		
Q5KC55              	18.09%		
Q5KNP3              	14.87%		
Q5KEM4              	14.67%		
Q5KHX6              	13.97%		
Q5KI02              	13.87%		
Q5KKU1              	13.47%		
Q5K875              	12.16%		
Q5K886              	11.56%		
Q5KHF5              	10.85%		
Q5KPG5              	10.05%		
Q5K7L4              	9.95%		
Q5KN93              	9.15%		
Q5K7F5              	8.54%		
Q5KNB7              	7.94%		
Q5KA09              	7.74%		
Q5K928              	7.44%		
Q5K7A1              	7.34%		
Q5K984              	6.73%		
Q5KNV0              	6.73%		
Q5KEI1              	6.63%		
Q5K860              	6.33%		
Q5KQ74              	6.03%		
Q5K9X4              	5.93%		
Q5KAT7              	5.43%		
Q5KL40              	5.43%		
Q5KGY8              	5.13%		
Bootstrap support for Q5KKS6 as seed ortholog is 66%.
Alternative seed ortholog is Q5KFT7 (19 bits away from this cluster)
Bootstrap support for D3BGZ6 as seed ortholog is 100%.

Group of orthologs #1731. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KLX4              	100.00%		D3BJR2              	100.00%
Q5K9M6              	47.75%		
Q5KH93              	19.59%		
Bootstrap support for Q5KLX4 as seed ortholog is 100%.
Bootstrap support for D3BJR2 as seed ortholog is 100%.

Group of orthologs #1732. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KB08              	100.00%		D3BIE6              	100.00%
Q5K8B2              	87.50%		
Bootstrap support for Q5KB08 as seed ortholog is 100%.
Bootstrap support for D3BIE6 as seed ortholog is 100%.

Group of orthologs #1733. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5K9G7              	100.00%		D3B591              	100.00%
Bootstrap support for Q5K9G7 as seed ortholog is 100%.
Bootstrap support for D3B591 as seed ortholog is 100%.

Group of orthologs #1734. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KBX8              	100.00%		D3B3C9              	100.00%
Bootstrap support for Q5KBX8 as seed ortholog is 100%.
Bootstrap support for D3B3C9 as seed ortholog is 100%.

Group of orthologs #1735. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5K8Z8              	100.00%		D3B656              	100.00%
Bootstrap support for Q5K8Z8 as seed ortholog is 100%.
Bootstrap support for D3B656 as seed ortholog is 100%.

Group of orthologs #1736. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KPR9              	100.00%		D3AXS1              	100.00%
Bootstrap support for Q5KPR9 as seed ortholog is 100%.
Bootstrap support for D3AXS1 as seed ortholog is 100%.

Group of orthologs #1737. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KI44              	100.00%		D3B6G0              	100.00%
Bootstrap support for Q5KI44 as seed ortholog is 100%.
Bootstrap support for D3B6G0 as seed ortholog is 100%.

Group of orthologs #1738. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KCL2              	100.00%		D3BEE9              	100.00%
Bootstrap support for Q5KCL2 as seed ortholog is 100%.
Bootstrap support for D3BEE9 as seed ortholog is 100%.

Group of orthologs #1739. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KHY7              	100.00%		D3BDA6              	100.00%
Bootstrap support for Q5KHY7 as seed ortholog is 100%.
Bootstrap support for D3BDA6 as seed ortholog is 100%.

Group of orthologs #1740. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:74

Q5KM71              	100.00%		D3BMB8              	100.00%
Bootstrap support for Q5KM71 as seed ortholog is 100%.
Bootstrap support for D3BMB8 as seed ortholog is 100%.

Group of orthologs #1741. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.pallidum:24

Q5KLD3              	100.00%		D3BR31              	100.00%
Bootstrap support for Q5KLD3 as seed ortholog is 100%.
Bootstrap support for D3BR31 as seed ortholog is 77%.

Group of orthologs #1742. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.pallidum:73

Q5KHM3              	100.00%		D3B005              	100.00%
                    	       		D3AWW0              	23.01%
                    	       		D3B179              	22.35%
                    	       		D3BKV6              	18.81%
                    	       		D3BUF2              	11.06%
Bootstrap support for Q5KHM3 as seed ortholog is 100%.
Bootstrap support for D3B005 as seed ortholog is 100%.

Group of orthologs #1743. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.pallidum:73

P0CR62              	100.00%		D3B0G4              	100.00%
Bootstrap support for P0CR62 as seed ortholog is 100%.
Bootstrap support for D3B0G4 as seed ortholog is 100%.

Group of orthologs #1744. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.pallidum:73

Q5KB67              	100.00%		D3B644              	100.00%
Bootstrap support for Q5KB67 as seed ortholog is 100%.
Bootstrap support for D3B644 as seed ortholog is 100%.

Group of orthologs #1745. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:22 P.pallidum:73

Q5KAA3              	100.00%		D3BEB9              	100.00%
Bootstrap support for Q5KAA3 as seed ortholog is 75%.
Bootstrap support for D3BEB9 as seed ortholog is 100%.

Group of orthologs #1746. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.pallidum:73

Q5KI41              	100.00%		D3BC93              	100.00%
Bootstrap support for Q5KI41 as seed ortholog is 100%.
Bootstrap support for D3BC93 as seed ortholog is 100%.

Group of orthologs #1747. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.pallidum:73

Q5KMJ0              	100.00%		D3BGQ6              	100.00%
Bootstrap support for Q5KMJ0 as seed ortholog is 100%.
Bootstrap support for D3BGQ6 as seed ortholog is 100%.

Group of orthologs #1748. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.pallidum:72

Q5K7Y3              	100.00%		D3AXW4              	100.00%
Bootstrap support for Q5K7Y3 as seed ortholog is 100%.
Bootstrap support for D3AXW4 as seed ortholog is 100%.

Group of orthologs #1749. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.pallidum:16

Q5K900              	100.00%		D3B9C3              	100.00%
Bootstrap support for Q5K900 as seed ortholog is 94%.
Bootstrap support for D3B9C3 as seed ortholog is 83%.

Group of orthologs #1750. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.pallidum:72

Q5KPF0              	100.00%		D3BAU2              	100.00%
Bootstrap support for Q5KPF0 as seed ortholog is 100%.
Bootstrap support for D3BAU2 as seed ortholog is 100%.

Group of orthologs #1751. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.pallidum:71

Q5KDW2              	100.00%		D3B575              	100.00%
Bootstrap support for Q5KDW2 as seed ortholog is 100%.
Bootstrap support for D3B575 as seed ortholog is 100%.

Group of orthologs #1752. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.pallidum:71

Q5KN27              	100.00%		D3B356              	100.00%
Bootstrap support for Q5KN27 as seed ortholog is 100%.
Bootstrap support for D3B356 as seed ortholog is 100%.

Group of orthologs #1753. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.pallidum:71

Q5KF35              	100.00%		D3BE40              	100.00%
Bootstrap support for Q5KF35 as seed ortholog is 100%.
Bootstrap support for D3BE40 as seed ortholog is 100%.

Group of orthologs #1754. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:2 P.pallidum:14

Q5KK55              	100.00%		D3BAT7              	100.00%
Bootstrap support for Q5KK55 as seed ortholog is 56%.
Alternative seed ortholog is Q5KL07 (2 bits away from this cluster)
Bootstrap support for D3BAT7 as seed ortholog is 78%.

Group of orthologs #1755. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.pallidum:71

Q5KCJ7              	100.00%		D3BM22              	100.00%
Bootstrap support for Q5KCJ7 as seed ortholog is 100%.
Bootstrap support for D3BM22 as seed ortholog is 100%.

Group of orthologs #1756. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.pallidum:71

Q5KPA4              	100.00%		D3BBK5              	100.00%
Bootstrap support for Q5KPA4 as seed ortholog is 100%.
Bootstrap support for D3BBK5 as seed ortholog is 100%.

Group of orthologs #1757. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.pallidum:71

Q5KC40              	100.00%		D3BNJ0              	100.00%
Bootstrap support for Q5KC40 as seed ortholog is 100%.
Bootstrap support for D3BNJ0 as seed ortholog is 100%.

Group of orthologs #1758. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.pallidum:70

Q5KC16              	100.00%		D3B3B7              	100.00%
Bootstrap support for Q5KC16 as seed ortholog is 100%.
Bootstrap support for D3B3B7 as seed ortholog is 100%.

Group of orthologs #1759. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.pallidum:70

Q5KH89              	100.00%		D3BCD6              	100.00%
Bootstrap support for Q5KH89 as seed ortholog is 100%.
Bootstrap support for D3BCD6 as seed ortholog is 100%.

Group of orthologs #1760. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.pallidum:70

Q5KI49              	100.00%		D3BR49              	100.00%
Bootstrap support for Q5KI49 as seed ortholog is 100%.
Bootstrap support for D3BR49 as seed ortholog is 100%.

Group of orthologs #1761. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:69

Q5KFF9              	100.00%		D3AVV1              	100.00%
Bootstrap support for Q5KFF9 as seed ortholog is 100%.
Bootstrap support for D3AVV1 as seed ortholog is 100%.

Group of orthologs #1762. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:69

Q5KEN7              	100.00%		D3B0F0              	100.00%
Bootstrap support for Q5KEN7 as seed ortholog is 100%.
Bootstrap support for D3B0F0 as seed ortholog is 100%.

Group of orthologs #1763. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:69

P0CN38              	100.00%		D3BAV8              	100.00%
Bootstrap support for P0CN38 as seed ortholog is 100%.
Bootstrap support for D3BAV8 as seed ortholog is 100%.

Group of orthologs #1764. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:69

Q5KFB2              	100.00%		D3B8B2              	100.00%
Bootstrap support for Q5KFB2 as seed ortholog is 100%.
Bootstrap support for D3B8B2 as seed ortholog is 100%.

Group of orthologs #1765. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:69

Q5KGS8              	100.00%		D3B7V9              	100.00%
Bootstrap support for Q5KGS8 as seed ortholog is 100%.
Bootstrap support for D3B7V9 as seed ortholog is 100%.

Group of orthologs #1766. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.pallidum:69

Q5KH14              	100.00%		D3BFE1              	100.00%
Bootstrap support for Q5KH14 as seed ortholog is 100%.
Bootstrap support for D3BFE1 as seed ortholog is 100%.

Group of orthologs #1767. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.pallidum:68

Q5KDG7              	100.00%		D3BCH8              	100.00%
Bootstrap support for Q5KDG7 as seed ortholog is 100%.
Bootstrap support for D3BCH8 as seed ortholog is 100%.

Group of orthologs #1768. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.pallidum:68

Q5KLF3              	100.00%		D3BKV8              	100.00%
Bootstrap support for Q5KLF3 as seed ortholog is 100%.
Bootstrap support for D3BKV8 as seed ortholog is 100%.

Group of orthologs #1769. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.pallidum:68

Q5KMV9              	100.00%		D3BU60              	100.00%
Bootstrap support for Q5KMV9 as seed ortholog is 100%.
Bootstrap support for D3BU60 as seed ortholog is 100%.

Group of orthologs #1770. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:67

Q5KG76              	100.00%		D3B2U1              	100.00%
Bootstrap support for Q5KG76 as seed ortholog is 100%.
Bootstrap support for D3B2U1 as seed ortholog is 100%.

Group of orthologs #1771. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:67

Q5KM94              	100.00%		D3BEQ8              	100.00%
Bootstrap support for Q5KM94 as seed ortholog is 100%.
Bootstrap support for D3BEQ8 as seed ortholog is 100%.

Group of orthologs #1772. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:67

Q5K827              	100.00%		D3BT78              	100.00%
Bootstrap support for Q5K827 as seed ortholog is 100%.
Bootstrap support for D3BT78 as seed ortholog is 100%.

Group of orthologs #1773. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:67

Q5KDT1              	100.00%		D3BQH9              	100.00%
Bootstrap support for Q5KDT1 as seed ortholog is 100%.
Bootstrap support for D3BQH9 as seed ortholog is 100%.

Group of orthologs #1774. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.pallidum:67

Q5KK92              	100.00%		D3BQH0              	100.00%
Bootstrap support for Q5KK92 as seed ortholog is 100%.
Bootstrap support for D3BQH0 as seed ortholog is 100%.

Group of orthologs #1775. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

Q5KIG2              	100.00%		D3AY24              	100.00%
                    	       		D3BIJ4              	9.76%
Bootstrap support for Q5KIG2 as seed ortholog is 100%.
Bootstrap support for D3AY24 as seed ortholog is 100%.

Group of orthologs #1776. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

Q5KF03              	100.00%		D3B2F4              	100.00%
Bootstrap support for Q5KF03 as seed ortholog is 100%.
Bootstrap support for D3B2F4 as seed ortholog is 100%.

Group of orthologs #1777. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

Q5KIZ0              	100.00%		D3B5J3              	100.00%
Bootstrap support for Q5KIZ0 as seed ortholog is 100%.
Bootstrap support for D3B5J3 as seed ortholog is 100%.

Group of orthologs #1778. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

Q5KBW1              	100.00%		D3BND9              	100.00%
Bootstrap support for Q5KBW1 as seed ortholog is 100%.
Bootstrap support for D3BND9 as seed ortholog is 100%.

Group of orthologs #1779. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

P0CO86              	100.00%		D3BU48              	100.00%
Bootstrap support for P0CO86 as seed ortholog is 100%.
Bootstrap support for D3BU48 as seed ortholog is 100%.

Group of orthologs #1780. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

Q5KK86              	100.00%		D3BNZ0              	100.00%
Bootstrap support for Q5KK86 as seed ortholog is 100%.
Bootstrap support for D3BNZ0 as seed ortholog is 100%.

Group of orthologs #1781. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.pallidum:66

Q5KL72              	100.00%		D3BPR8              	100.00%
Bootstrap support for Q5KL72 as seed ortholog is 100%.
Bootstrap support for D3BPR8 as seed ortholog is 100%.

Group of orthologs #1782. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.pallidum:65

Q5KAJ0              	100.00%		D3AZC1              	100.00%
Bootstrap support for Q5KAJ0 as seed ortholog is 100%.
Bootstrap support for D3AZC1 as seed ortholog is 100%.

Group of orthologs #1783. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.pallidum:65

P0CO34              	100.00%		D3BAU7              	100.00%
Bootstrap support for P0CO34 as seed ortholog is 100%.
Bootstrap support for D3BAU7 as seed ortholog is 100%.

Group of orthologs #1784. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KPB3              	100.00%		D3BNG4              	100.00%
                    	       		D3B654              	14.16%
                    	       		D3BKP4              	12.39%
                    	       		D3B834              	9.56%
                    	       		D3B6L0              	9.20%
                    	       		D3B1J1              	8.67%
                    	       		D3AXT5              	7.96%
                    	       		D3B4B7              	7.26%
                    	       		D3BR32              	6.02%
Bootstrap support for Q5KPB3 as seed ortholog is 100%.
Bootstrap support for D3BNG4 as seed ortholog is 100%.

Group of orthologs #1785. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5K7N1              	100.00%		D3BF44              	100.00%
Q5KMW9              	13.21%		D3BQK1              	9.60%
Q5KKK7              	13.21%		
Q5KBZ5              	8.32%		
Bootstrap support for Q5K7N1 as seed ortholog is 100%.
Bootstrap support for D3BF44 as seed ortholog is 100%.

Group of orthologs #1786. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KLN7              	100.00%		D3AWY4              	100.00%
Q5KLN8              	60.04%		
Q5K866              	8.60%		
Bootstrap support for Q5KLN7 as seed ortholog is 100%.
Bootstrap support for D3AWY4 as seed ortholog is 100%.

Group of orthologs #1787. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KJI9              	100.00%		D3AXP3              	100.00%
                    	       		D3BB53              	9.99%
Bootstrap support for Q5KJI9 as seed ortholog is 100%.
Bootstrap support for D3AXP3 as seed ortholog is 100%.

Group of orthologs #1788. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KLP6              	100.00%		D3BGL3              	100.00%
                    	       		D3BUM2              	34.15%
Bootstrap support for Q5KLP6 as seed ortholog is 100%.
Bootstrap support for D3BGL3 as seed ortholog is 100%.

Group of orthologs #1789. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

P0CS18              	100.00%		D3AZR3              	100.00%
Bootstrap support for P0CS18 as seed ortholog is 100%.
Bootstrap support for D3AZR3 as seed ortholog is 100%.

Group of orthologs #1790. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KEG9              	100.00%		D3B194              	100.00%
Bootstrap support for Q5KEG9 as seed ortholog is 100%.
Bootstrap support for D3B194 as seed ortholog is 100%.

Group of orthologs #1791. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5K904              	100.00%		D3B8S7              	100.00%
Bootstrap support for Q5K904 as seed ortholog is 100%.
Bootstrap support for D3B8S7 as seed ortholog is 100%.

Group of orthologs #1792. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KIT8              	100.00%		D3BAU4              	100.00%
Bootstrap support for Q5KIT8 as seed ortholog is 100%.
Bootstrap support for D3BAU4 as seed ortholog is 100%.

Group of orthologs #1793. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KLI5              	100.00%		D3B8K6              	100.00%
Bootstrap support for Q5KLI5 as seed ortholog is 100%.
Bootstrap support for D3B8K6 as seed ortholog is 100%.

Group of orthologs #1794. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.pallidum:64

Q5KCE2              	100.00%		D3BK55              	100.00%
Bootstrap support for Q5KCE2 as seed ortholog is 100%.
Bootstrap support for D3BK55 as seed ortholog is 100%.

Group of orthologs #1795. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.pallidum:63

Q5KG59              	100.00%		D3B0C5              	100.00%
Bootstrap support for Q5KG59 as seed ortholog is 100%.
Bootstrap support for D3B0C5 as seed ortholog is 100%.

Group of orthologs #1796. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.pallidum:63

Q5KID6              	100.00%		D3B4H4              	100.00%
Bootstrap support for Q5KID6 as seed ortholog is 100%.
Bootstrap support for D3B4H4 as seed ortholog is 100%.

Group of orthologs #1797. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.pallidum:2

Q5KLT2              	100.00%		D3B3Z9              	100.00%
Bootstrap support for Q5KLT2 as seed ortholog is 68%.
Alternative seed ortholog is Q5KDZ6 (9 bits away from this cluster)
Bootstrap support for D3B3Z9 as seed ortholog is 46%.
Alternative seed ortholog is D3BFD9 (2 bits away from this cluster)

Group of orthologs #1798. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:23 P.pallidum:63

Q5KBD5              	100.00%		D3BJY7              	100.00%
Bootstrap support for Q5KBD5 as seed ortholog is 90%.
Bootstrap support for D3BJY7 as seed ortholog is 100%.

Group of orthologs #1799. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.pallidum:63

Q5KCA1              	100.00%		D3BT01              	100.00%
Bootstrap support for Q5KCA1 as seed ortholog is 100%.
Bootstrap support for D3BT01 as seed ortholog is 100%.

Group of orthologs #1800. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.pallidum:63

Q5KGA0              	100.00%		D3BRH6              	100.00%
Bootstrap support for Q5KGA0 as seed ortholog is 100%.
Bootstrap support for D3BRH6 as seed ortholog is 100%.

Group of orthologs #1801. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5KDR0              	100.00%		D3BR71              	100.00%
Q5KDL9              	43.41%		D3B7L8              	43.69%
                    	       		D3BQC7              	39.75%
Bootstrap support for Q5KDR0 as seed ortholog is 100%.
Bootstrap support for D3BR71 as seed ortholog is 100%.

Group of orthologs #1802. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5KFH6              	100.00%		D3B8K1              	100.00%
                    	       		D3B4A7              	7.32%
Bootstrap support for Q5KFH6 as seed ortholog is 100%.
Bootstrap support for D3B8K1 as seed ortholog is 100%.

Group of orthologs #1803. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

P0CO56              	100.00%		D3B334              	100.00%
Bootstrap support for P0CO56 as seed ortholog is 100%.
Bootstrap support for D3B334 as seed ortholog is 100%.

Group of orthologs #1804. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5K7U9              	100.00%		D3B3S3              	100.00%
Bootstrap support for Q5K7U9 as seed ortholog is 100%.
Bootstrap support for D3B3S3 as seed ortholog is 100%.

Group of orthologs #1805. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5K845              	100.00%		D3B7J5              	100.00%
Bootstrap support for Q5K845 as seed ortholog is 100%.
Bootstrap support for D3B7J5 as seed ortholog is 100%.

Group of orthologs #1806. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5KBC4              	100.00%		D3B6T1              	100.00%
Bootstrap support for Q5KBC4 as seed ortholog is 100%.
Bootstrap support for D3B6T1 as seed ortholog is 100%.

Group of orthologs #1807. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.pallidum:62

Q5KLY6              	100.00%		D3B3P7              	100.00%
Bootstrap support for Q5KLY6 as seed ortholog is 100%.
Bootstrap support for D3B3P7 as seed ortholog is 100%.

Group of orthologs #1808. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:13

Q5KLM4              	100.00%		D3AVG4              	100.00%
Q5KHL0              	100.00%		D3BAA3              	100.00%
                    	       		D3BBA6              	58.99%
Bootstrap support for Q5KLM4 as seed ortholog is 100%.
Bootstrap support for Q5KHL0 as seed ortholog is 100%.
Bootstrap support for D3AVG4 as seed ortholog is 67%.
Alternative seed ortholog is D3AX96 (13 bits away from this cluster)
Bootstrap support for D3BAA3 as seed ortholog is 63%.
Alternative seed ortholog is D3AX96 (13 bits away from this cluster)

Group of orthologs #1809. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:13 P.pallidum:61

Q5KJ72              	100.00%		D3BEB8              	100.00%
                    	       		D3BLB7              	7.59%
Bootstrap support for Q5KJ72 as seed ortholog is 51%.
Alternative seed ortholog is Q5KN92 (13 bits away from this cluster)
Bootstrap support for D3BEB8 as seed ortholog is 100%.

Group of orthologs #1810. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:61

Q5KK17              	100.00%		D3AWB7              	100.00%
Bootstrap support for Q5KK17 as seed ortholog is 100%.
Bootstrap support for D3AWB7 as seed ortholog is 100%.

Group of orthologs #1811. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:61

Q5K727              	100.00%		D3BM28              	100.00%
Bootstrap support for Q5K727 as seed ortholog is 100%.
Bootstrap support for D3BM28 as seed ortholog is 100%.

Group of orthologs #1812. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.pallidum:61

Q5K7J0              	100.00%		D3BQF3              	100.00%
Bootstrap support for Q5K7J0 as seed ortholog is 100%.
Bootstrap support for D3BQF3 as seed ortholog is 100%.

Group of orthologs #1813. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

Q5KCK6              	100.00%		D3BCJ0              	100.00%
                    	       		D3BBZ0              	12.80%
Bootstrap support for Q5KCK6 as seed ortholog is 100%.
Bootstrap support for D3BCJ0 as seed ortholog is 100%.

Group of orthologs #1814. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

Q5KEW1              	100.00%		D3BSM0              	100.00%
Q5KBN1              	28.93%		
Bootstrap support for Q5KEW1 as seed ortholog is 100%.
Bootstrap support for D3BSM0 as seed ortholog is 100%.

Group of orthologs #1815. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

Q5KCH9              	100.00%		D3AYT2              	100.00%
Bootstrap support for Q5KCH9 as seed ortholog is 100%.
Bootstrap support for D3AYT2 as seed ortholog is 100%.

Group of orthologs #1816. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

Q5KD71              	100.00%		D3B4M2              	100.00%
Bootstrap support for Q5KD71 as seed ortholog is 100%.
Bootstrap support for D3B4M2 as seed ortholog is 100%.

Group of orthologs #1817. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

Q5KJ70              	100.00%		D3B7T1              	100.00%
Bootstrap support for Q5KJ70 as seed ortholog is 100%.
Bootstrap support for D3B7T1 as seed ortholog is 100%.

Group of orthologs #1818. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

P0CR68              	100.00%		D3BNN0              	100.00%
Bootstrap support for P0CR68 as seed ortholog is 100%.
Bootstrap support for D3BNN0 as seed ortholog is 100%.

Group of orthologs #1819. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.pallidum:60

Q5KDB8              	100.00%		D3BUQ1              	100.00%
Bootstrap support for Q5KDB8 as seed ortholog is 100%.
Bootstrap support for D3BUQ1 as seed ortholog is 100%.

Group of orthologs #1820. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.pallidum:59

Q5KIE9              	100.00%		D3BL51              	100.00%
                    	       		D3BR40              	12.78%
                    	       		D3BSB7              	10.44%
                    	       		D3B9H4              	9.36%
                    	       		D3B1Z4              	5.67%
Bootstrap support for Q5KIE9 as seed ortholog is 100%.
Bootstrap support for D3BL51 as seed ortholog is 100%.

Group of orthologs #1821. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.pallidum:59

F5HFW5              	100.00%		D3BG72              	100.00%
Bootstrap support for F5HFW5 as seed ortholog is 100%.
Bootstrap support for D3BG72 as seed ortholog is 100%.

Group of orthologs #1822. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.pallidum:59

Q5K7S6              	100.00%		D3BG33              	100.00%
Bootstrap support for Q5K7S6 as seed ortholog is 100%.
Bootstrap support for D3BG33 as seed ortholog is 100%.

Group of orthologs #1823. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.pallidum:59

Q5KPF6              	100.00%		D3BEP7              	100.00%
Bootstrap support for Q5KPF6 as seed ortholog is 100%.
Bootstrap support for D3BEP7 as seed ortholog is 100%.

Group of orthologs #1824. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5K7Z4              	100.00%		D3AXH4              	100.00%
                    	       		D3AWH6              	66.67%
                    	       		D3AXH1              	65.33%
Bootstrap support for Q5K7Z4 as seed ortholog is 100%.
Bootstrap support for D3AXH4 as seed ortholog is 100%.

Group of orthologs #1825. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5KG40              	100.00%		D3BDT5              	100.00%
                    	       		D3BDT4              	71.24%
                    	       		D3B835              	30.33%
Bootstrap support for Q5KG40 as seed ortholog is 100%.
Bootstrap support for D3BDT5 as seed ortholog is 100%.

Group of orthologs #1826. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5KAX3              	100.00%		D3B024              	100.00%
Bootstrap support for Q5KAX3 as seed ortholog is 100%.
Bootstrap support for D3B024 as seed ortholog is 100%.

Group of orthologs #1827. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

P0CN54              	100.00%		D3B6R0              	100.00%
Bootstrap support for P0CN54 as seed ortholog is 100%.
Bootstrap support for D3B6R0 as seed ortholog is 100%.

Group of orthologs #1828. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5KFM1              	100.00%		D3B2P0              	100.00%
Bootstrap support for Q5KFM1 as seed ortholog is 100%.
Bootstrap support for D3B2P0 as seed ortholog is 100%.

Group of orthologs #1829. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5KG38              	100.00%		D3B4V6              	100.00%
Bootstrap support for Q5KG38 as seed ortholog is 100%.
Bootstrap support for D3B4V6 as seed ortholog is 100%.

Group of orthologs #1830. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5KD43              	100.00%		D3BE05              	100.00%
Bootstrap support for Q5KD43 as seed ortholog is 100%.
Bootstrap support for D3BE05 as seed ortholog is 100%.

Group of orthologs #1831. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.pallidum:58

Q5KC98              	100.00%		D3BHA9              	100.00%
Bootstrap support for Q5KC98 as seed ortholog is 100%.
Bootstrap support for D3BHA9 as seed ortholog is 100%.

Group of orthologs #1832. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5KEA4              	100.00%		D3BK54              	100.00%
Q5KK10              	36.57%		
Q5K725              	10.23%		
Bootstrap support for Q5KEA4 as seed ortholog is 100%.
Bootstrap support for D3BK54 as seed ortholog is 100%.

Group of orthologs #1833. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5K7I4              	100.00%		D3B0F4              	100.00%
Bootstrap support for Q5K7I4 as seed ortholog is 100%.
Bootstrap support for D3B0F4 as seed ortholog is 100%.

Group of orthologs #1834. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5K9Q9              	100.00%		D3B7P8              	100.00%
Bootstrap support for Q5K9Q9 as seed ortholog is 100%.
Bootstrap support for D3B7P8 as seed ortholog is 100%.

Group of orthologs #1835. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5KPP1              	100.00%		D3B9W5              	100.00%
Bootstrap support for Q5KPP1 as seed ortholog is 100%.
Bootstrap support for D3B9W5 as seed ortholog is 100%.

Group of orthologs #1836. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5KJY9              	100.00%		D3BFJ5              	100.00%
Bootstrap support for Q5KJY9 as seed ortholog is 100%.
Bootstrap support for D3BFJ5 as seed ortholog is 100%.

Group of orthologs #1837. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5KCT7              	100.00%		D3BTG7              	100.00%
Bootstrap support for Q5KCT7 as seed ortholog is 100%.
Bootstrap support for D3BTG7 as seed ortholog is 100%.

Group of orthologs #1838. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5KJ57              	100.00%		D3BN40              	100.00%
Bootstrap support for Q5KJ57 as seed ortholog is 100%.
Bootstrap support for D3BN40 as seed ortholog is 100%.

Group of orthologs #1839. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.pallidum:57

Q5KDR3              	100.00%		D3BUL3              	100.00%
Bootstrap support for Q5KDR3 as seed ortholog is 100%.
Bootstrap support for D3BUL3 as seed ortholog is 100%.

Group of orthologs #1840. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:56

Q5KJ95              	100.00%		D3BIK1              	100.00%
Q5KHL8              	6.73%		
Q5KEL4              	6.04%		
Q5KEC9              	5.00%		
Bootstrap support for Q5KJ95 as seed ortholog is 100%.
Bootstrap support for D3BIK1 as seed ortholog is 100%.

Group of orthologs #1841. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:2

Q5KJX4              	100.00%		D3BB99              	100.00%
                    	       		D3BDT9              	16.29%
Bootstrap support for Q5KJX4 as seed ortholog is 100%.
Bootstrap support for D3BB99 as seed ortholog is 51%.
Alternative seed ortholog is D3BGY7 (2 bits away from this cluster)

Group of orthologs #1842. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:56

Q5K7P3              	100.00%		D3B438              	100.00%
Bootstrap support for Q5K7P3 as seed ortholog is 100%.
Bootstrap support for D3B438 as seed ortholog is 100%.

Group of orthologs #1843. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:56

Q5KDP6              	100.00%		D3B139              	100.00%
Bootstrap support for Q5KDP6 as seed ortholog is 100%.
Bootstrap support for D3B139 as seed ortholog is 100%.

Group of orthologs #1844. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:56

P0CR60              	100.00%		D3BE38              	100.00%
Bootstrap support for P0CR60 as seed ortholog is 100%.
Bootstrap support for D3BE38 as seed ortholog is 100%.

Group of orthologs #1845. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:56

Q5KGQ9              	100.00%		D3BNR6              	100.00%
Bootstrap support for Q5KGQ9 as seed ortholog is 100%.
Bootstrap support for D3BNR6 as seed ortholog is 100%.

Group of orthologs #1846. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.pallidum:56

Q5KJP2              	100.00%		D3BPY4              	100.00%
Bootstrap support for Q5KJP2 as seed ortholog is 100%.
Bootstrap support for D3BPY4 as seed ortholog is 100%.

Group of orthologs #1847. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:55

Q5KBZ8              	100.00%		D3AX05              	100.00%
Bootstrap support for Q5KBZ8 as seed ortholog is 100%.
Bootstrap support for D3AX05 as seed ortholog is 100%.

Group of orthologs #1848. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:55

Q5K8M0              	100.00%		D3B2E2              	100.00%
Bootstrap support for Q5K8M0 as seed ortholog is 100%.
Bootstrap support for D3B2E2 as seed ortholog is 100%.

Group of orthologs #1849. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:55

Q5KK93              	100.00%		D3B523              	100.00%
Bootstrap support for Q5KK93 as seed ortholog is 100%.
Bootstrap support for D3B523 as seed ortholog is 100%.

Group of orthologs #1850. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.pallidum:55

Q5KL15              	100.00%		D3B5K9              	100.00%
Bootstrap support for Q5KL15 as seed ortholog is 100%.
Bootstrap support for D3B5K9 as seed ortholog is 100%.

Group of orthologs #1851. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

Q5KKR6              	100.00%		D3BMI5              	100.00%
Q5KKR5              	53.89%		D3BFT7              	18.01%
Bootstrap support for Q5KKR6 as seed ortholog is 100%.
Bootstrap support for D3BMI5 as seed ortholog is 100%.

Group of orthologs #1852. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

Q5KAW2              	100.00%		D3B412              	100.00%
Q5KIG3              	17.98%		
Bootstrap support for Q5KAW2 as seed ortholog is 100%.
Bootstrap support for D3B412 as seed ortholog is 100%.

Group of orthologs #1853. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

Q5KCB1              	100.00%		D3B1F7              	100.00%
Bootstrap support for Q5KCB1 as seed ortholog is 100%.
Bootstrap support for D3B1F7 as seed ortholog is 100%.

Group of orthologs #1854. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

Q5KD81              	100.00%		D3B0P6              	100.00%
Bootstrap support for Q5KD81 as seed ortholog is 100%.
Bootstrap support for D3B0P6 as seed ortholog is 100%.

Group of orthologs #1855. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

P0CQ38              	100.00%		D3BJL5              	100.00%
Bootstrap support for P0CQ38 as seed ortholog is 100%.
Bootstrap support for D3BJL5 as seed ortholog is 100%.

Group of orthologs #1856. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

P0CR98              	100.00%		D3BKA6              	100.00%
Bootstrap support for P0CR98 as seed ortholog is 100%.
Bootstrap support for D3BKA6 as seed ortholog is 100%.

Group of orthologs #1857. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.pallidum:54

Q5KK18              	100.00%		D3BMX3              	100.00%
Bootstrap support for Q5KK18 as seed ortholog is 100%.
Bootstrap support for D3BMX3 as seed ortholog is 100%.

Group of orthologs #1858. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.pallidum:53

Q5K7B9              	100.00%		D3AW26              	100.00%
Bootstrap support for Q5K7B9 as seed ortholog is 100%.
Bootstrap support for D3AW26 as seed ortholog is 100%.

Group of orthologs #1859. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.pallidum:53

Q5KLA4              	100.00%		D3BAZ9              	100.00%
Bootstrap support for Q5KLA4 as seed ortholog is 100%.
Bootstrap support for D3BAZ9 as seed ortholog is 100%.

Group of orthologs #1860. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.pallidum:53

Q5KGY5              	100.00%		D3BPP1              	100.00%
Bootstrap support for Q5KGY5 as seed ortholog is 100%.
Bootstrap support for D3BPP1 as seed ortholog is 100%.

Group of orthologs #1861. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.pallidum:52

P0CM36              	100.00%		D3B8P8              	100.00%
Bootstrap support for P0CM36 as seed ortholog is 100%.
Bootstrap support for D3B8P8 as seed ortholog is 100%.

Group of orthologs #1862. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.pallidum:52

Q5KPL1              	100.00%		D3BEF4              	100.00%
Bootstrap support for Q5KPL1 as seed ortholog is 100%.
Bootstrap support for D3BEF4 as seed ortholog is 100%.

Group of orthologs #1863. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.pallidum:51

Q5KGD2              	100.00%		D3B1N1              	100.00%
Q5KID2              	37.20%		
Bootstrap support for Q5KGD2 as seed ortholog is 100%.
Bootstrap support for D3B1N1 as seed ortholog is 100%.

Group of orthologs #1864. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.pallidum:50

Q5KNR5              	100.00%		D3AWB5              	100.00%
Bootstrap support for Q5KNR5 as seed ortholog is 100%.
Bootstrap support for D3AWB5 as seed ortholog is 100%.

Group of orthologs #1865. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.pallidum:50

Q5KD82              	100.00%		D3B8C0              	100.00%
Bootstrap support for Q5KD82 as seed ortholog is 100%.
Bootstrap support for D3B8C0 as seed ortholog is 100%.

Group of orthologs #1866. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.pallidum:50

Q5KKJ4              	100.00%		D3BJL0              	100.00%
Bootstrap support for Q5KKJ4 as seed ortholog is 100%.
Bootstrap support for D3BJL0 as seed ortholog is 100%.

Group of orthologs #1867. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.pallidum:49

Q5KFE6              	100.00%		D3BLX7              	100.00%
                    	       		D3BLX8              	27.26%
                    	       		D3BFG1              	7.68%
                    	       		D3BIU9              	7.29%
                    	       		D3BNM6              	7.29%
Bootstrap support for Q5KFE6 as seed ortholog is 100%.
Bootstrap support for D3BLX7 as seed ortholog is 100%.

Group of orthologs #1868. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.pallidum:49

Q5KQ12              	100.00%		D3B6I3              	100.00%
Q5KN14              	22.88%		
Bootstrap support for Q5KQ12 as seed ortholog is 100%.
Bootstrap support for D3B6I3 as seed ortholog is 100%.

Group of orthologs #1869. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.pallidum:49

Q5KHF7              	100.00%		D3B288              	100.00%
Bootstrap support for Q5KHF7 as seed ortholog is 100%.
Bootstrap support for D3B288 as seed ortholog is 100%.

Group of orthologs #1870. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.pallidum:49

Q5KEH4              	100.00%		D3BHG6              	100.00%
Bootstrap support for Q5KEH4 as seed ortholog is 100%.
Bootstrap support for D3BHG6 as seed ortholog is 100%.

Group of orthologs #1871. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.pallidum:49

Q5KLS9              	100.00%		D3BDZ5              	100.00%
Bootstrap support for Q5KLS9 as seed ortholog is 100%.
Bootstrap support for D3BDZ5 as seed ortholog is 100%.

Group of orthologs #1872. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.pallidum:48

Q5K6Z4              	100.00%		D3BFL2              	100.00%
Bootstrap support for Q5K6Z4 as seed ortholog is 100%.
Bootstrap support for D3BFL2 as seed ortholog is 100%.

Group of orthologs #1873. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.pallidum:48

Q5K8Y7              	100.00%		D3BP20              	100.00%
Bootstrap support for Q5K8Y7 as seed ortholog is 100%.
Bootstrap support for D3BP20 as seed ortholog is 100%.

Group of orthologs #1874. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.pallidum:47

Q5KAK8              	100.00%		D3BQ37              	100.00%
Q5KAK7              	100.00%		D3B7G5              	100.00%
                    	       		D3B7G7              	44.08%
                    	       		D3B7G6              	38.42%
                    	       		D3B7G4              	38.22%
                    	       		D3BRA4              	28.82%
                    	       		D3BSH1              	27.96%
                    	       		D3AWE8              	20.95%
Bootstrap support for Q5KAK8 as seed ortholog is 100%.
Bootstrap support for Q5KAK7 as seed ortholog is 100%.
Bootstrap support for D3BQ37 as seed ortholog is 100%.
Bootstrap support for D3B7G5 as seed ortholog is 100%.

Group of orthologs #1875. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.pallidum:47

Q5KP43              	100.00%		D3BDZ6              	100.00%
Q5KE24              	15.06%		D3BEL8              	17.54%
                    	       		D3BNT6              	13.62%
                    	       		D3BIS5              	8.41%
Bootstrap support for Q5KP43 as seed ortholog is 100%.
Bootstrap support for D3BDZ6 as seed ortholog is 100%.

Group of orthologs #1876. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.pallidum:47

Q5KLD2              	100.00%		D3BIM3              	100.00%
                    	       		D3BU99              	5.68%
Bootstrap support for Q5KLD2 as seed ortholog is 100%.
Bootstrap support for D3BIM3 as seed ortholog is 100%.

Group of orthologs #1877. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.pallidum:47

Q5KIN2              	100.00%		D3AZ35              	100.00%
Bootstrap support for Q5KIN2 as seed ortholog is 100%.
Bootstrap support for D3AZ35 as seed ortholog is 100%.

Group of orthologs #1878. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.pallidum:47

Q5KJR5              	100.00%		D3BM87              	100.00%
Bootstrap support for Q5KJR5 as seed ortholog is 100%.
Bootstrap support for D3BM87 as seed ortholog is 100%.

Group of orthologs #1879. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.pallidum:46

Q5KBR2              	100.00%		D3BQ44              	100.00%
Bootstrap support for Q5KBR2 as seed ortholog is 100%.
Bootstrap support for D3BQ44 as seed ortholog is 100%.

Group of orthologs #1880. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.pallidum:46

Q5KJ13              	100.00%		D3BMY5              	100.00%
Bootstrap support for Q5KJ13 as seed ortholog is 100%.
Bootstrap support for D3BMY5 as seed ortholog is 100%.

Group of orthologs #1881. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.pallidum:46

Q5KQ14              	100.00%		D3BNQ6              	100.00%
Bootstrap support for Q5KQ14 as seed ortholog is 100%.
Bootstrap support for D3BNQ6 as seed ortholog is 100%.

Group of orthologs #1882. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.pallidum:45

Q5KK46              	100.00%		D3B2B2              	100.00%
Bootstrap support for Q5KK46 as seed ortholog is 100%.
Bootstrap support for D3B2B2 as seed ortholog is 100%.

Group of orthologs #1883. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.pallidum:44

Q5KHL9              	100.00%		D3BF30              	100.00%
                    	       		D3BPM9              	20.93%
                    	       		D3BJM3              	17.83%
Bootstrap support for Q5KHL9 as seed ortholog is 100%.
Bootstrap support for D3BF30 as seed ortholog is 100%.

Group of orthologs #1884. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.pallidum:44

P0CQ32              	100.00%		D3B9C9              	100.00%
Bootstrap support for P0CQ32 as seed ortholog is 100%.
Bootstrap support for D3B9C9 as seed ortholog is 100%.

Group of orthologs #1885. Best score 43 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.pallidum:43

Q5K9T1              	100.00%		D3BBV4              	100.00%
Q5KMT1              	15.38%		
Q5KFK0              	14.87%		
Q5KIR3              	7.18%		
Bootstrap support for Q5K9T1 as seed ortholog is 100%.
Bootstrap support for D3BBV4 as seed ortholog is 100%.

Group of orthologs #1886. Best score 43 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.pallidum:43

Q5K848              	100.00%		D3AZM3              	100.00%
Bootstrap support for Q5K848 as seed ortholog is 100%.
Bootstrap support for D3AZM3 as seed ortholog is 100%.

Group of orthologs #1887. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.pallidum:42

Q5KBC1              	100.00%		D3AZM4              	100.00%
Bootstrap support for Q5KBC1 as seed ortholog is 100%.
Bootstrap support for D3AZM4 as seed ortholog is 100%.

Group of orthologs #1888. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.pallidum:42

Q5KH42              	100.00%		D3B5W0              	100.00%
Bootstrap support for Q5KH42 as seed ortholog is 100%.
Bootstrap support for D3B5W0 as seed ortholog is 100%.

Group of orthologs #1889. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.pallidum:42

Q5KJ23              	100.00%		D3BEH1              	100.00%
Bootstrap support for Q5KJ23 as seed ortholog is 100%.
Bootstrap support for D3BEH1 as seed ortholog is 100%.

Group of orthologs #1890. Best score 41 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.pallidum:41

Q5KES2              	100.00%		D3B3S1              	100.00%
                    	       		D3B9V4              	81.48%
                    	       		D3B9X7              	14.04%
Bootstrap support for Q5KES2 as seed ortholog is 100%.
Bootstrap support for D3B3S1 as seed ortholog is 100%.

Group of orthologs #1891. Best score 41 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.pallidum:41

Q5KA90              	100.00%		D3AWE2              	100.00%
Bootstrap support for Q5KA90 as seed ortholog is 100%.
Bootstrap support for D3AWE2 as seed ortholog is 100%.

Group of orthologs #1892. Best score 41 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.pallidum:41

Q5K8C9              	100.00%		D3B9D4              	100.00%
Bootstrap support for Q5K8C9 as seed ortholog is 100%.
Bootstrap support for D3B9D4 as seed ortholog is 100%.

Group of orthologs #1893. Best score 40 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.pallidum:40

Q5KIH9              	100.00%		D3BH80              	100.00%
Bootstrap support for Q5KIH9 as seed ortholog is 100%.
Bootstrap support for D3BH80 as seed ortholog is 100%.