###################################
322 groups of orthologs
390 in-paralogs from C.neoformans
397 in-paralogs from P.kodakaraensis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 761 bits
Score difference with first non-orthologous sequence - C.neoformans:25 P.kodakaraensis:761

Q5KC33              	100.00%		Q5JE32              	100.00%
Bootstrap support for Q5KC33 as seed ortholog is 69%.
Alternative seed ortholog is Q5KIB7 (25 bits away from this cluster)
Bootstrap support for Q5JE32 as seed ortholog is 100%.

Group of orthologs #2. Best score 612 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.kodakaraensis:612

Q5KFV9              	100.00%		Q5JE33              	100.00%
Bootstrap support for Q5KFV9 as seed ortholog is 99%.
Bootstrap support for Q5JE33 as seed ortholog is 100%.

Group of orthologs #3. Best score 601 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.kodakaraensis:601

Q5KA71              	100.00%		Q5JE98              	100.00%
                    	       		Q9V2X2              	53.92%
Bootstrap support for Q5KA71 as seed ortholog is 99%.
Bootstrap support for Q5JE98 as seed ortholog is 100%.

Group of orthologs #4. Best score 574 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.kodakaraensis:574

Q5KGV5              	100.00%		Q5JIR3              	100.00%
Bootstrap support for Q5KGV5 as seed ortholog is 100%.
Bootstrap support for Q5JIR3 as seed ortholog is 100%.

Group of orthologs #5. Best score 553 bits
Score difference with first non-orthologous sequence - C.neoformans:405 P.kodakaraensis:553

Q5KBW0              	100.00%		Q5JIR2              	100.00%
Bootstrap support for Q5KBW0 as seed ortholog is 100%.
Bootstrap support for Q5JIR2 as seed ortholog is 100%.

Group of orthologs #6. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:432 P.kodakaraensis:530

Q5KN88              	100.00%		Q5JDX6              	100.00%
Bootstrap support for Q5KN88 as seed ortholog is 100%.
Bootstrap support for Q5JDX6 as seed ortholog is 100%.

Group of orthologs #7. Best score 520 bits
Score difference with first non-orthologous sequence - C.neoformans:520 P.kodakaraensis:520

Q5KLA1              	100.00%		Q5JGF1              	100.00%
Bootstrap support for Q5KLA1 as seed ortholog is 100%.
Bootstrap support for Q5JGF1 as seed ortholog is 100%.

Group of orthologs #8. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.kodakaraensis:483

Q5KPM2              	100.00%		Q5JJ31              	100.00%
Bootstrap support for Q5KPM2 as seed ortholog is 97%.
Bootstrap support for Q5JJ31 as seed ortholog is 100%.

Group of orthologs #9. Best score 463 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.kodakaraensis:463

Q5KHJ9              	100.00%		Q5JFZ3              	100.00%
Q5KIQ1              	9.06%		
Bootstrap support for Q5KHJ9 as seed ortholog is 99%.
Bootstrap support for Q5JFZ3 as seed ortholog is 100%.

Group of orthologs #10. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.kodakaraensis:356

Q5KLA7              	100.00%		Q5JEV6              	100.00%
Bootstrap support for Q5KLA7 as seed ortholog is 100%.
Bootstrap support for Q5JEV6 as seed ortholog is 100%.

Group of orthologs #11. Best score 449 bits
Score difference with first non-orthologous sequence - C.neoformans:199 P.kodakaraensis:449

P0CN30              	100.00%		Q5JFZ4              	100.00%
Bootstrap support for P0CN30 as seed ortholog is 100%.
Bootstrap support for Q5JFZ4 as seed ortholog is 100%.

Group of orthologs #12. Best score 448 bits
Score difference with first non-orthologous sequence - C.neoformans:448 P.kodakaraensis:311

Q5KNJ3              	100.00%		Q9YGB0              	100.00%
Bootstrap support for Q5KNJ3 as seed ortholog is 100%.
Bootstrap support for Q9YGB0 as seed ortholog is 100%.

Group of orthologs #13. Best score 437 bits
Score difference with first non-orthologous sequence - C.neoformans:317 P.kodakaraensis:437

Q5K7U0              	100.00%		Q8NKR7              	100.00%
Bootstrap support for Q5K7U0 as seed ortholog is 100%.
Bootstrap support for Q8NKR7 as seed ortholog is 100%.

Group of orthologs #14. Best score 430 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.kodakaraensis:430

Q5K722              	100.00%		Q5JDF4              	100.00%
Bootstrap support for Q5K722 as seed ortholog is 100%.
Bootstrap support for Q5JDF4 as seed ortholog is 100%.

Group of orthologs #15. Best score 407 bits
Score difference with first non-orthologous sequence - C.neoformans:407 P.kodakaraensis:407

Q5K9S3              	100.00%		Q5JIP3              	100.00%
Bootstrap support for Q5K9S3 as seed ortholog is 100%.
Bootstrap support for Q5JIP3 as seed ortholog is 100%.

Group of orthologs #16. Best score 404 bits
Score difference with first non-orthologous sequence - C.neoformans:36 P.kodakaraensis:404

Q5K9H1              	100.00%		P61111              	100.00%
                    	       		Q52500              	70.45%
Bootstrap support for Q5K9H1 as seed ortholog is 75%.
Bootstrap support for P61111 as seed ortholog is 100%.

Group of orthologs #17. Best score 388 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.kodakaraensis:388

P0CR28              	100.00%		Q5JGE5              	100.00%
Bootstrap support for P0CR28 as seed ortholog is 71%.
Alternative seed ortholog is P0CR26 (21 bits away from this cluster)
Bootstrap support for Q5JGE5 as seed ortholog is 100%.

Group of orthologs #18. Best score 367 bits
Score difference with first non-orthologous sequence - C.neoformans:14 P.kodakaraensis:236

Q5KA27              	100.00%		Q5JHS5              	100.00%
Bootstrap support for Q5KA27 as seed ortholog is 67%.
Alternative seed ortholog is Q5KGN2 (14 bits away from this cluster)
Bootstrap support for Q5JHS5 as seed ortholog is 100%.

Group of orthologs #19. Best score 361 bits
Score difference with first non-orthologous sequence - C.neoformans:361 P.kodakaraensis:361

Q5KFS5              	100.00%		Q5JID8              	100.00%
Bootstrap support for Q5KFS5 as seed ortholog is 100%.
Bootstrap support for Q5JID8 as seed ortholog is 100%.

Group of orthologs #20. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:4 P.kodakaraensis:352

Q5KDF5              	100.00%		Q5JJA2              	100.00%
Bootstrap support for Q5KDF5 as seed ortholog is 92%.
Bootstrap support for Q5JJA2 as seed ortholog is 100%.

Group of orthologs #21. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.kodakaraensis:272

Q5KII0              	100.00%		Q5JH71              	100.00%
Bootstrap support for Q5KII0 as seed ortholog is 100%.
Bootstrap support for Q5JH71 as seed ortholog is 100%.

Group of orthologs #22. Best score 337 bits
Score difference with first non-orthologous sequence - C.neoformans:337 P.kodakaraensis:337

Q5K9Z1              	100.00%		Q5JFR1              	100.00%
Bootstrap support for Q5K9Z1 as seed ortholog is 100%.
Bootstrap support for Q5JFR1 as seed ortholog is 100%.

Group of orthologs #23. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:216 P.kodakaraensis:334

Q5KI46              	100.00%		Q5JDZ7              	100.00%
Bootstrap support for Q5KI46 as seed ortholog is 100%.
Bootstrap support for Q5JDZ7 as seed ortholog is 100%.

Group of orthologs #24. Best score 333 bits
Score difference with first non-orthologous sequence - C.neoformans:3 P.kodakaraensis:333

Q5K7N5              	100.00%		Q5JIT1              	100.00%
Bootstrap support for Q5K7N5 as seed ortholog is 99%.
Bootstrap support for Q5JIT1 as seed ortholog is 100%.

Group of orthologs #25. Best score 333 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.kodakaraensis:333

Q5KIW8              	100.00%		Q5JDL3              	100.00%
Bootstrap support for Q5KIW8 as seed ortholog is 100%.
Bootstrap support for Q5JDL3 as seed ortholog is 100%.

Group of orthologs #26. Best score 333 bits
Score difference with first non-orthologous sequence - C.neoformans:333 P.kodakaraensis:333

Q5KGH1              	100.00%		Q5JJC8              	100.00%
Bootstrap support for Q5KGH1 as seed ortholog is 100%.
Bootstrap support for Q5JJC8 as seed ortholog is 100%.

Group of orthologs #27. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:332 P.kodakaraensis:332

Q5KJ87              	100.00%		Q5JED2              	100.00%
Bootstrap support for Q5KJ87 as seed ortholog is 100%.
Bootstrap support for Q5JED2 as seed ortholog is 100%.

Group of orthologs #28. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.kodakaraensis:312

Q5KMF6              	100.00%		Q5JGN7              	100.00%
Bootstrap support for Q5KMF6 as seed ortholog is 94%.
Bootstrap support for Q5JGN7 as seed ortholog is 100%.

Group of orthologs #29. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.kodakaraensis:309

Q5KI64              	100.00%		Q5JIQ2              	100.00%
Bootstrap support for Q5KI64 as seed ortholog is 100%.
Bootstrap support for Q5JIQ2 as seed ortholog is 100%.

Group of orthologs #30. Best score 306 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.kodakaraensis:306

Q5KHS3              	100.00%		Q5JE75              	100.00%
Bootstrap support for Q5KHS3 as seed ortholog is 98%.
Bootstrap support for Q5JE75 as seed ortholog is 100%.

Group of orthologs #31. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:298 P.kodakaraensis:298

Q5K9E9              	100.00%		Q5JFM1              	100.00%
Bootstrap support for Q5K9E9 as seed ortholog is 100%.
Bootstrap support for Q5JFM1 as seed ortholog is 100%.

Group of orthologs #32. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.kodakaraensis:297

Q5KKG6              	100.00%		Q76I93              	100.00%
Bootstrap support for Q5KKG6 as seed ortholog is 100%.
Bootstrap support for Q76I93 as seed ortholog is 100%.

Group of orthologs #33. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.kodakaraensis:294

Q5KII9              	100.00%		O93623              	100.00%
Bootstrap support for Q5KII9 as seed ortholog is 100%.
Bootstrap support for O93623 as seed ortholog is 100%.

Group of orthologs #34. Best score 290 bits
Score difference with first non-orthologous sequence - C.neoformans:290 P.kodakaraensis:290

Q5KLD7              	100.00%		Q5JF49              	100.00%
Bootstrap support for Q5KLD7 as seed ortholog is 100%.
Bootstrap support for Q5JF49 as seed ortholog is 100%.

Group of orthologs #35. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.kodakaraensis:284

P0CQ14              	100.00%		Q5JEW3              	100.00%
Bootstrap support for P0CQ14 as seed ortholog is 100%.
Bootstrap support for Q5JEW3 as seed ortholog is 100%.

Group of orthologs #36. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.kodakaraensis:278

Q5KA97              	100.00%		Q5JEY0              	100.00%
Bootstrap support for Q5KA97 as seed ortholog is 100%.
Bootstrap support for Q5JEY0 as seed ortholog is 100%.

Group of orthologs #37. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.kodakaraensis:277

Q5KC69              	100.00%		Q5JJH1              	100.00%
Bootstrap support for Q5KC69 as seed ortholog is 100%.
Bootstrap support for Q5JJH1 as seed ortholog is 100%.

Group of orthologs #38. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.kodakaraensis:275

Q5KB11              	100.00%		Q9HHC4              	100.00%
Q5KNS4              	7.86%		
Bootstrap support for Q5KB11 as seed ortholog is 100%.
Bootstrap support for Q9HHC4 as seed ortholog is 100%.

Group of orthologs #39. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.kodakaraensis:274

P0CS60              	100.00%		Q5JGN0              	100.00%
Bootstrap support for P0CS60 as seed ortholog is 100%.
Bootstrap support for Q5JGN0 as seed ortholog is 100%.

Group of orthologs #40. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.kodakaraensis:274

Q5KP44              	100.00%		Q5JFM0              	100.00%
Bootstrap support for Q5KP44 as seed ortholog is 100%.
Bootstrap support for Q5JFM0 as seed ortholog is 100%.

Group of orthologs #41. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.kodakaraensis:204

Q5KHJ1              	100.00%		Q52428              	100.00%
Q5KEI6              	14.27%		
Bootstrap support for Q5KHJ1 as seed ortholog is 99%.
Bootstrap support for Q52428 as seed ortholog is 100%.

Group of orthologs #42. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.kodakaraensis:267

Q5KAU7              	100.00%		Q5JEP3              	100.00%
Bootstrap support for Q5KAU7 as seed ortholog is 100%.
Bootstrap support for Q5JEP3 as seed ortholog is 100%.

Group of orthologs #43. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:265 P.kodakaraensis:265

Q5KIH6              	100.00%		Q5JJE8              	100.00%
Bootstrap support for Q5KIH6 as seed ortholog is 100%.
Bootstrap support for Q5JJE8 as seed ortholog is 100%.

Group of orthologs #44. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.kodakaraensis:172

Q5K7N9              	100.00%		Q5JET4              	100.00%
Q5KNC3              	11.11%		
Bootstrap support for Q5K7N9 as seed ortholog is 100%.
Bootstrap support for Q5JET4 as seed ortholog is 100%.

Group of orthologs #45. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.kodakaraensis:259

Q5KH38              	100.00%		Q5JHC1              	100.00%
Bootstrap support for Q5KH38 as seed ortholog is 88%.
Bootstrap support for Q5JHC1 as seed ortholog is 100%.

Group of orthologs #46. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.kodakaraensis:258

Q5K754              	100.00%		Q5JHC6              	100.00%
Bootstrap support for Q5K754 as seed ortholog is 100%.
Bootstrap support for Q5JHC6 as seed ortholog is 100%.

Group of orthologs #47. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.kodakaraensis:256

Q5KKU4              	100.00%		Q5JIS8              	100.00%
Bootstrap support for Q5KKU4 as seed ortholog is 100%.
Bootstrap support for Q5JIS8 as seed ortholog is 100%.

Group of orthologs #48. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.kodakaraensis:253

Q5KF19              	100.00%		Q9YGB3              	100.00%
Bootstrap support for Q5KF19 as seed ortholog is 100%.
Bootstrap support for Q9YGB3 as seed ortholog is 100%.

Group of orthologs #49. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:4 P.kodakaraensis:251

P0CQ72              	100.00%		Q5JFZ6              	100.00%
P0CQ70              	53.90%		
Bootstrap support for P0CQ72 as seed ortholog is 64%.
Alternative seed ortholog is P0CR00 (4 bits away from this cluster)
Bootstrap support for Q5JFZ6 as seed ortholog is 100%.

Group of orthologs #50. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.kodakaraensis:249

Q5KK08              	100.00%		Q5JEW1              	100.00%
Q5KBZ2              	31.16%		Q5JGG6              	7.82%
Bootstrap support for Q5KK08 as seed ortholog is 92%.
Bootstrap support for Q5JEW1 as seed ortholog is 100%.

Group of orthologs #51. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.kodakaraensis:249

Q5KBY0              	100.00%		Q5JFK3              	100.00%
Bootstrap support for Q5KBY0 as seed ortholog is 80%.
Bootstrap support for Q5JFK3 as seed ortholog is 100%.

Group of orthologs #52. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.kodakaraensis:247

Q5KJR9              	100.00%		Q5JGK6              	100.00%
Bootstrap support for Q5KJR9 as seed ortholog is 100%.
Bootstrap support for Q5JGK6 as seed ortholog is 100%.

Group of orthologs #53. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.kodakaraensis:240

Q5KMQ2              	100.00%		Q5JD45              	100.00%
Bootstrap support for Q5KMQ2 as seed ortholog is 99%.
Bootstrap support for Q5JD45 as seed ortholog is 100%.

Group of orthologs #54. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.kodakaraensis:185

Q5KKJ5              	100.00%		Q5JGQ7              	100.00%
Q5KF32              	25.77%		
Bootstrap support for Q5KKJ5 as seed ortholog is 100%.
Bootstrap support for Q5JGQ7 as seed ortholog is 100%.

Group of orthologs #55. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.kodakaraensis:235

Q5KK07              	100.00%		Q5JFN4              	100.00%
Bootstrap support for Q5KK07 as seed ortholog is 100%.
Bootstrap support for Q5JFN4 as seed ortholog is 100%.

Group of orthologs #56. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.kodakaraensis:141

P0CQ36              	100.00%		Q5JDF6              	100.00%
Bootstrap support for P0CQ36 as seed ortholog is 100%.
Bootstrap support for Q5JDF6 as seed ortholog is 99%.

Group of orthologs #57. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.kodakaraensis:231

Q5KAB8              	100.00%		Q76KA8              	100.00%
Bootstrap support for Q5KAB8 as seed ortholog is 100%.
Bootstrap support for Q76KA8 as seed ortholog is 100%.

Group of orthologs #58. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.kodakaraensis:71

Q5K8J5              	100.00%		Q5JHX4              	100.00%
Bootstrap support for Q5K8J5 as seed ortholog is 100%.
Bootstrap support for Q5JHX4 as seed ortholog is 98%.

Group of orthologs #59. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.kodakaraensis:228

Q5KEX3              	100.00%		Q5JG59              	100.00%
Q5K8N2              	38.76%		
Q5KIR2              	31.94%		
Q5KBZ0              	8.08%		
Q5KIV9              	7.20%		
Bootstrap support for Q5KEX3 as seed ortholog is 90%.
Bootstrap support for Q5JG59 as seed ortholog is 100%.

Group of orthologs #60. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.kodakaraensis:227

Q5KGK1              	100.00%		Q5JJ43              	100.00%
Bootstrap support for Q5KGK1 as seed ortholog is 100%.
Bootstrap support for Q5JJ43 as seed ortholog is 100%.

Group of orthologs #61. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.kodakaraensis:223

Q5KFZ4              	100.00%		Q5JH16              	100.00%
Bootstrap support for Q5KFZ4 as seed ortholog is 100%.
Bootstrap support for Q5JH16 as seed ortholog is 100%.

Group of orthologs #62. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.kodakaraensis:223

Q5KLS2              	100.00%		Q5JHP3              	100.00%
Bootstrap support for Q5KLS2 as seed ortholog is 74%.
Alternative seed ortholog is Q5KJC6 (27 bits away from this cluster)
Bootstrap support for Q5JHP3 as seed ortholog is 100%.

Group of orthologs #63. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:221 P.kodakaraensis:221

Q5KK90              	100.00%		Q76KA7              	100.00%
Bootstrap support for Q5KK90 as seed ortholog is 100%.
Bootstrap support for Q76KA7 as seed ortholog is 100%.

Group of orthologs #64. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.kodakaraensis:217

Q5KPK7              	100.00%		Q5JH37              	100.00%
Bootstrap support for Q5KPK7 as seed ortholog is 100%.
Bootstrap support for Q5JH37 as seed ortholog is 100%.

Group of orthologs #65. Best score 216 bits
Score difference with first non-orthologous sequence - C.neoformans:216 P.kodakaraensis:216

Q5KGK2              	100.00%		Q5JFN0              	100.00%
P0CP26              	12.96%		
Bootstrap support for Q5KGK2 as seed ortholog is 100%.
Bootstrap support for Q5JFN0 as seed ortholog is 100%.

Group of orthologs #66. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.kodakaraensis:212

Q5KK45              	100.00%		Q5JI16              	100.00%
Bootstrap support for Q5KK45 as seed ortholog is 100%.
Bootstrap support for Q5JI16 as seed ortholog is 100%.

Group of orthologs #67. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.kodakaraensis:211

P0CN40              	100.00%		Q5JF43              	100.00%
Bootstrap support for P0CN40 as seed ortholog is 100%.
Bootstrap support for Q5JF43 as seed ortholog is 100%.

Group of orthologs #68. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.kodakaraensis:208

Q5K9E3              	100.00%		Q5JDJ0              	100.00%
Bootstrap support for Q5K9E3 as seed ortholog is 100%.
Bootstrap support for Q5JDJ0 as seed ortholog is 100%.

Group of orthologs #69. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.kodakaraensis:80

Q5KCZ2              	100.00%		Q5JGG2              	100.00%
Bootstrap support for Q5KCZ2 as seed ortholog is 100%.
Bootstrap support for Q5JGG2 as seed ortholog is 97%.

Group of orthologs #70. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.kodakaraensis:207

Q5KN70              	100.00%		Q5JGC4              	100.00%
Bootstrap support for Q5KN70 as seed ortholog is 69%.
Alternative seed ortholog is Q5KFZ5 (17 bits away from this cluster)
Bootstrap support for Q5JGC4 as seed ortholog is 100%.

Group of orthologs #71. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.kodakaraensis:205

Q5KNM0              	100.00%		Q5JFW3              	100.00%
Bootstrap support for Q5KNM0 as seed ortholog is 42%.
Alternative seed ortholog is Q5K8Q2 (9 bits away from this cluster)
Bootstrap support for Q5JFW3 as seed ortholog is 100%.

Group of orthologs #72. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.kodakaraensis:204

Q5KA00              	100.00%		Q5JFN1              	100.00%
Bootstrap support for Q5KA00 as seed ortholog is 100%.
Bootstrap support for Q5JFN1 as seed ortholog is 100%.

Group of orthologs #73. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.kodakaraensis:201

Q5K8Z3              	100.00%		Q5JDH2              	100.00%
Bootstrap support for Q5K8Z3 as seed ortholog is 100%.
Bootstrap support for Q5JDH2 as seed ortholog is 100%.

Group of orthologs #74. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.kodakaraensis:201

Q5KCY4              	100.00%		Q5JFT4              	100.00%
Bootstrap support for Q5KCY4 as seed ortholog is 100%.
Bootstrap support for Q5JFT4 as seed ortholog is 100%.

Group of orthologs #75. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.kodakaraensis:198

Q5KFM3              	100.00%		Q5JIK4              	100.00%
Bootstrap support for Q5KFM3 as seed ortholog is 100%.
Bootstrap support for Q5JIK4 as seed ortholog is 100%.

Group of orthologs #76. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:22 P.kodakaraensis:198

Q5KIV1              	100.00%		Q5JIU9              	100.00%
Bootstrap support for Q5KIV1 as seed ortholog is 74%.
Alternative seed ortholog is Q5KCK7 (22 bits away from this cluster)
Bootstrap support for Q5JIU9 as seed ortholog is 100%.

Group of orthologs #77. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.kodakaraensis:194

Q5KI84              	100.00%		Q5JFV8              	100.00%
Bootstrap support for Q5KI84 as seed ortholog is 50%.
Alternative seed ortholog is Q5KP37 (1 bits away from this cluster)
Bootstrap support for Q5JFV8 as seed ortholog is 100%.

Group of orthologs #78. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.kodakaraensis:191

Q5K7B4              	100.00%		Q5JFP1              	100.00%
Bootstrap support for Q5K7B4 as seed ortholog is 100%.
Bootstrap support for Q5JFP1 as seed ortholog is 100%.

Group of orthologs #79. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.kodakaraensis:190

Q5KKJ8              	100.00%		Q5JEZ2              	100.00%
                    	       		Q5JF48              	14.65%
Bootstrap support for Q5KKJ8 as seed ortholog is 63%.
Alternative seed ortholog is Q5KN11 (9 bits away from this cluster)
Bootstrap support for Q5JEZ2 as seed ortholog is 100%.

Group of orthologs #80. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.kodakaraensis:190

P0CQ34              	100.00%		Q5JIE6              	100.00%
Bootstrap support for P0CQ34 as seed ortholog is 100%.
Bootstrap support for Q5JIE6 as seed ortholog is 100%.

Group of orthologs #81. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.kodakaraensis:140

P0CS70              	100.00%		Q5JDV8              	100.00%
                    	       		Q5JIM8              	6.13%
Bootstrap support for P0CS70 as seed ortholog is 100%.
Bootstrap support for Q5JDV8 as seed ortholog is 99%.

Group of orthologs #82. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.kodakaraensis:187

Q5K9W1              	100.00%		P77933              	100.00%
Q5KLX6              	5.53%		
Bootstrap support for Q5K9W1 as seed ortholog is 100%.
Bootstrap support for P77933 as seed ortholog is 100%.

Group of orthologs #83. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.kodakaraensis:186

Q5KAM1              	100.00%		Q5JEP5              	100.00%
Bootstrap support for Q5KAM1 as seed ortholog is 95%.
Bootstrap support for Q5JEP5 as seed ortholog is 100%.

Group of orthologs #84. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.kodakaraensis:186

Q5KAU8              	100.00%		Q5JF06              	100.00%
Bootstrap support for Q5KAU8 as seed ortholog is 100%.
Bootstrap support for Q5JF06 as seed ortholog is 100%.

Group of orthologs #85. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.kodakaraensis:186

Q5KF97              	100.00%		Q5JIL7              	100.00%
Bootstrap support for Q5KF97 as seed ortholog is 100%.
Bootstrap support for Q5JIL7 as seed ortholog is 100%.

Group of orthologs #86. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.kodakaraensis:185

Q5KPU2              	100.00%		Q5JEQ6              	100.00%
                    	       		Q5JJB8              	18.57%
Bootstrap support for Q5KPU2 as seed ortholog is 100%.
Bootstrap support for Q5JEQ6 as seed ortholog is 100%.

Group of orthologs #87. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.kodakaraensis:82

P0CO88              	100.00%		Q5JDD8              	100.00%
P0CO90              	8.82%		
Bootstrap support for P0CO88 as seed ortholog is 75%.
Bootstrap support for Q5JDD8 as seed ortholog is 99%.

Group of orthologs #88. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.kodakaraensis:183

P0CM02              	100.00%		Q5JFV6              	100.00%
Bootstrap support for P0CM02 as seed ortholog is 95%.
Bootstrap support for Q5JFV6 as seed ortholog is 100%.

Group of orthologs #89. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.kodakaraensis:183

Q5KIZ5              	100.00%		Q5JFV5              	100.00%
Bootstrap support for Q5KIZ5 as seed ortholog is 99%.
Bootstrap support for Q5JFV5 as seed ortholog is 100%.

Group of orthologs #90. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.kodakaraensis:182

Q5KQ79              	100.00%		Q5JF51              	100.00%
                    	       		Q5JHU0              	27.73%
                    	       		Q5JE21              	11.09%
Bootstrap support for Q5KQ79 as seed ortholog is 98%.
Bootstrap support for Q5JF51 as seed ortholog is 100%.

Group of orthologs #91. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.kodakaraensis:182

Q5KLQ8              	100.00%		Q5JIA4              	100.00%
Bootstrap support for Q5KLQ8 as seed ortholog is 100%.
Bootstrap support for Q5JIA4 as seed ortholog is 100%.

Group of orthologs #92. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.kodakaraensis:177

Q5KFT0              	100.00%		Q5JJF3              	100.00%
Bootstrap support for Q5KFT0 as seed ortholog is 100%.
Bootstrap support for Q5JJF3 as seed ortholog is 100%.

Group of orthologs #93. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.kodakaraensis:174

Q5KDR3              	100.00%		Q5JF38              	100.00%
Bootstrap support for Q5KDR3 as seed ortholog is 99%.
Bootstrap support for Q5JF38 as seed ortholog is 100%.

Group of orthologs #94. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.kodakaraensis:173

Q5KE01              	100.00%		Q5JIG7              	100.00%
Bootstrap support for Q5KE01 as seed ortholog is 100%.
Bootstrap support for Q5JIG7 as seed ortholog is 100%.

Group of orthologs #95. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.kodakaraensis:171

Q5KAF2              	100.00%		Q5JDI0              	100.00%
Bootstrap support for Q5KAF2 as seed ortholog is 100%.
Bootstrap support for Q5JDI0 as seed ortholog is 100%.

Group of orthologs #96. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.kodakaraensis:167

Q5KA07              	100.00%		Q5JDE9              	100.00%
Bootstrap support for Q5KA07 as seed ortholog is 100%.
Bootstrap support for Q5JDE9 as seed ortholog is 100%.

Group of orthologs #97. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.kodakaraensis:167

Q5KDT3              	100.00%		Q5JGD1              	100.00%
Bootstrap support for Q5KDT3 as seed ortholog is 94%.
Bootstrap support for Q5JGD1 as seed ortholog is 100%.

Group of orthologs #98. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.kodakaraensis:167

Q5KCC8              	100.00%		Q5JJ82              	100.00%
Bootstrap support for Q5KCC8 as seed ortholog is 94%.
Bootstrap support for Q5JJ82 as seed ortholog is 100%.

Group of orthologs #99. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.kodakaraensis:167

Q5KJD4              	100.00%		Q5JH43              	100.00%
Bootstrap support for Q5KJD4 as seed ortholog is 100%.
Bootstrap support for Q5JH43 as seed ortholog is 100%.

Group of orthologs #100. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.kodakaraensis:167

Q5KK51              	100.00%		Q5JIH2              	100.00%
Bootstrap support for Q5KK51 as seed ortholog is 86%.
Bootstrap support for Q5JIH2 as seed ortholog is 100%.

Group of orthologs #101. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.kodakaraensis:166

Q5KNA0              	100.00%		Q5JFU8              	100.00%
Bootstrap support for Q5KNA0 as seed ortholog is 100%.
Bootstrap support for Q5JFU8 as seed ortholog is 100%.

Group of orthologs #102. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:16 P.kodakaraensis:164

Q5KEQ7              	100.00%		Q5JFM8              	100.00%
Q5KM31              	39.05%		
Q5KM49              	9.73%		
Bootstrap support for Q5KEQ7 as seed ortholog is 63%.
Alternative seed ortholog is Q5KFI9 (16 bits away from this cluster)
Bootstrap support for Q5JFM8 as seed ortholog is 100%.

Group of orthologs #103. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.kodakaraensis:162

Q5KNK2              	100.00%		Q5JJG0              	100.00%
Bootstrap support for Q5KNK2 as seed ortholog is 100%.
Bootstrap support for Q5JJG0 as seed ortholog is 100%.

Group of orthologs #104. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.kodakaraensis:161

P0CQ56              	100.00%		Q5JJD2              	100.00%
Bootstrap support for P0CQ56 as seed ortholog is 100%.
Bootstrap support for Q5JJD2 as seed ortholog is 100%.

Group of orthologs #105. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.kodakaraensis:159

Q5KEV1              	100.00%		Q5JJG8              	100.00%
Bootstrap support for Q5KEV1 as seed ortholog is 100%.
Bootstrap support for Q5JJG8 as seed ortholog is 100%.

Group of orthologs #106. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.kodakaraensis:158

Q5KDD6              	100.00%		Q5JE20              	100.00%
Bootstrap support for Q5KDD6 as seed ortholog is 99%.
Bootstrap support for Q5JE20 as seed ortholog is 100%.

Group of orthologs #107. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.kodakaraensis:158

Q5KK40              	100.00%		Q5JDG3              	100.00%
Bootstrap support for Q5KK40 as seed ortholog is 100%.
Bootstrap support for Q5JDG3 as seed ortholog is 100%.

Group of orthologs #108. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.kodakaraensis:156

Q5KA19              	100.00%		Q5JJG1              	100.00%
Bootstrap support for Q5KA19 as seed ortholog is 100%.
Bootstrap support for Q5JJG1 as seed ortholog is 100%.

Group of orthologs #109. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.kodakaraensis:155

Q5KBA0              	100.00%		Q5JFX8              	100.00%
Bootstrap support for Q5KBA0 as seed ortholog is 77%.
Bootstrap support for Q5JFX8 as seed ortholog is 100%.

Group of orthologs #110. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.kodakaraensis:155

Q5KL32              	100.00%		O59650              	100.00%
Bootstrap support for Q5KL32 as seed ortholog is 100%.
Bootstrap support for O59650 as seed ortholog is 100%.

Group of orthologs #111. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.kodakaraensis:155

Q5KLQ5              	100.00%		Q5JHP2              	100.00%
Bootstrap support for Q5KLQ5 as seed ortholog is 100%.
Bootstrap support for Q5JHP2 as seed ortholog is 100%.

Group of orthologs #112. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.kodakaraensis:153

Q5K8J3              	100.00%		Q5JDI4              	100.00%
Bootstrap support for Q5K8J3 as seed ortholog is 100%.
Bootstrap support for Q5JDI4 as seed ortholog is 100%.

Group of orthologs #113. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.kodakaraensis:153

Q5K947              	100.00%		Q5JE04              	100.00%
Bootstrap support for Q5K947 as seed ortholog is 100%.
Bootstrap support for Q5JE04 as seed ortholog is 100%.

Group of orthologs #114. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.kodakaraensis:152

Q5KJI8              	100.00%		Q5JIM2              	100.00%
Bootstrap support for Q5KJI8 as seed ortholog is 100%.
Bootstrap support for Q5JIM2 as seed ortholog is 100%.

Group of orthologs #115. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.kodakaraensis:151

Q5KEZ6              	100.00%		Q5JFE7              	100.00%
Bootstrap support for Q5KEZ6 as seed ortholog is 100%.
Bootstrap support for Q5JFE7 as seed ortholog is 100%.

Group of orthologs #116. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.kodakaraensis:150

Q5K8R8              	100.00%		Q5JEZ9              	100.00%
Q5KMG1              	36.62%		Q5JH45              	5.54%
P0CL92              	5.72%		
Bootstrap support for Q5K8R8 as seed ortholog is 100%.
Bootstrap support for Q5JEZ9 as seed ortholog is 100%.

Group of orthologs #117. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.kodakaraensis:150

P0CM88              	100.00%		Q5JH24              	100.00%
Bootstrap support for P0CM88 as seed ortholog is 100%.
Bootstrap support for Q5JH24 as seed ortholog is 100%.

Group of orthologs #118. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:25 P.kodakaraensis:146

Q5KPJ4              	100.00%		Q5JI69              	100.00%
Q5KPZ2              	39.34%		
Q5KAN3              	9.08%		
Q5K981              	8.36%		
Q5KJG0              	7.35%		
Q5KEL5              	6.77%		
Q5KD15              	5.76%		
Bootstrap support for Q5KPJ4 as seed ortholog is 70%.
Alternative seed ortholog is Q5KJK1 (25 bits away from this cluster)
Bootstrap support for Q5JI69 as seed ortholog is 100%.

Group of orthologs #119. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.kodakaraensis:39

P0CO20              	100.00%		Q5JI97              	100.00%
Q5KDW3              	11.86%		
Bootstrap support for P0CO20 as seed ortholog is 100%.
Bootstrap support for Q5JI97 as seed ortholog is 87%.

Group of orthologs #120. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.kodakaraensis:145

P0CO42              	100.00%		Q5JH68              	100.00%
Bootstrap support for P0CO42 as seed ortholog is 99%.
Bootstrap support for Q5JH68 as seed ortholog is 100%.

Group of orthologs #121. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.kodakaraensis:143

Q5KLY2              	100.00%		Q5JDV1              	100.00%
P0CN76              	47.80%		
Bootstrap support for Q5KLY2 as seed ortholog is 100%.
Bootstrap support for Q5JDV1 as seed ortholog is 100%.

Group of orthologs #122. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.kodakaraensis:143

Q5KIJ0              	100.00%		Q5JGJ4              	100.00%
Bootstrap support for Q5KIJ0 as seed ortholog is 100%.
Bootstrap support for Q5JGJ4 as seed ortholog is 100%.

Group of orthologs #123. Best score 142 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.kodakaraensis:142

Q5KNR6              	100.00%		Q5JH96              	100.00%
Bootstrap support for Q5KNR6 as seed ortholog is 100%.
Bootstrap support for Q5JH96 as seed ortholog is 100%.

Group of orthologs #124. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.kodakaraensis:141

Q5KEJ6              	100.00%		Q5JH36              	100.00%
Bootstrap support for Q5KEJ6 as seed ortholog is 99%.
Bootstrap support for Q5JH36 as seed ortholog is 100%.

Group of orthologs #125. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.kodakaraensis:140

Q5KKT0              	100.00%		Q5JHS7              	100.00%
Bootstrap support for Q5KKT0 as seed ortholog is 100%.
Bootstrap support for Q5JHS7 as seed ortholog is 100%.

Group of orthologs #126. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.kodakaraensis:136

Q5KAX6              	100.00%		Q5JI54              	100.00%
Bootstrap support for Q5KAX6 as seed ortholog is 100%.
Bootstrap support for Q5JI54 as seed ortholog is 100%.

Group of orthologs #127. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:39 P.kodakaraensis:135

F5HFW5              	100.00%		Q5JJ05              	100.00%
Bootstrap support for F5HFW5 as seed ortholog is 82%.
Bootstrap support for Q5JJ05 as seed ortholog is 100%.

Group of orthologs #128. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.kodakaraensis:135

Q5KND5              	100.00%		O08467              	100.00%
Bootstrap support for Q5KND5 as seed ortholog is 100%.
Bootstrap support for O08467 as seed ortholog is 100%.

Group of orthologs #129. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.kodakaraensis:135

Q5KM46              	100.00%		Q5JFU6              	100.00%
Bootstrap support for Q5KM46 as seed ortholog is 100%.
Bootstrap support for Q5JFU6 as seed ortholog is 100%.

Group of orthologs #130. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.kodakaraensis:134

Q5K6Y9              	100.00%		Q5JH48              	100.00%
Bootstrap support for Q5K6Y9 as seed ortholog is 100%.
Bootstrap support for Q5JH48 as seed ortholog is 100%.

Group of orthologs #131. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.kodakaraensis:133

Q5KGR6              	100.00%		Q5JGR7              	100.00%
Q5KAX0              	9.94%		
Bootstrap support for Q5KGR6 as seed ortholog is 100%.
Bootstrap support for Q5JGR7 as seed ortholog is 100%.

Group of orthologs #132. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.kodakaraensis:132

Q5K844              	100.00%		Q5JIW4              	100.00%
                    	       		Q5JI77              	10.51%
Bootstrap support for Q5K844 as seed ortholog is 100%.
Bootstrap support for Q5JIW4 as seed ortholog is 100%.

Group of orthologs #133. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.kodakaraensis:132

Q5KK78              	100.00%		Q5JFR0              	100.00%
Bootstrap support for Q5KK78 as seed ortholog is 100%.
Bootstrap support for Q5JFR0 as seed ortholog is 100%.

Group of orthologs #134. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.kodakaraensis:132

Q5KQ20              	100.00%		Q5JIB3              	100.00%
Bootstrap support for Q5KQ20 as seed ortholog is 100%.
Bootstrap support for Q5JIB3 as seed ortholog is 100%.

Group of orthologs #135. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.kodakaraensis:131

Q5KJ01              	100.00%		Q5JEX2              	100.00%
Bootstrap support for Q5KJ01 as seed ortholog is 98%.
Bootstrap support for Q5JEX2 as seed ortholog is 100%.

Group of orthologs #136. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.kodakaraensis:131

Q5KIC8              	100.00%		Q5JGE1              	100.00%
Bootstrap support for Q5KIC8 as seed ortholog is 100%.
Bootstrap support for Q5JGE1 as seed ortholog is 100%.

Group of orthologs #137. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.kodakaraensis:131

Q5KMU3              	100.00%		Q5JGC8              	100.00%
Bootstrap support for Q5KMU3 as seed ortholog is 100%.
Bootstrap support for Q5JGC8 as seed ortholog is 100%.

Group of orthologs #138. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.kodakaraensis:130

Q5KPY6              	100.00%		Q8X268              	100.00%
Q5K924              	28.22%		
Q5KGI6              	23.34%		
Q5K993              	18.07%		
Bootstrap support for Q5KPY6 as seed ortholog is 100%.
Bootstrap support for Q8X268 as seed ortholog is 100%.

Group of orthologs #139. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.kodakaraensis:130

P0CM24              	100.00%		Q5JIF4              	100.00%
Bootstrap support for P0CM24 as seed ortholog is 100%.
Bootstrap support for Q5JIF4 as seed ortholog is 100%.

Group of orthologs #140. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.kodakaraensis:130

Q5K979              	100.00%		Q5JJG3              	100.00%
Bootstrap support for Q5K979 as seed ortholog is 100%.
Bootstrap support for Q5JJG3 as seed ortholog is 100%.

Group of orthologs #141. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.kodakaraensis:130

Q5KCG5              	100.00%		Q5JIA2              	100.00%
Bootstrap support for Q5KCG5 as seed ortholog is 100%.
Bootstrap support for Q5JIA2 as seed ortholog is 100%.

Group of orthologs #142. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.kodakaraensis:130

Q5KPZ1              	100.00%		Q5JDH5              	100.00%
Bootstrap support for Q5KPZ1 as seed ortholog is 100%.
Bootstrap support for Q5JDH5 as seed ortholog is 100%.

Group of orthologs #143. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.kodakaraensis:129

Q5K9Z8              	100.00%		Q5JF30              	100.00%
Bootstrap support for Q5K9Z8 as seed ortholog is 81%.
Bootstrap support for Q5JF30 as seed ortholog is 100%.

Group of orthologs #144. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.kodakaraensis:126

P0CR18              	100.00%		Q5JH26              	100.00%
Bootstrap support for P0CR18 as seed ortholog is 100%.
Bootstrap support for Q5JH26 as seed ortholog is 100%.

Group of orthologs #145. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.kodakaraensis:126

Q5KJN6              	100.00%		Q5JDR5              	100.00%
Bootstrap support for Q5KJN6 as seed ortholog is 100%.
Bootstrap support for Q5JDR5 as seed ortholog is 100%.

Group of orthologs #146. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:10 P.kodakaraensis:126

Q5KHU0              	100.00%		Q5JIR6              	100.00%
Bootstrap support for Q5KHU0 as seed ortholog is 62%.
Alternative seed ortholog is Q5KA82 (10 bits away from this cluster)
Bootstrap support for Q5JIR6 as seed ortholog is 100%.

Group of orthologs #147. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.kodakaraensis:125

Q5KGB6              	100.00%		Q5JF76              	100.00%
Q5K8E7              	7.73%		
Bootstrap support for Q5KGB6 as seed ortholog is 92%.
Bootstrap support for Q5JF76 as seed ortholog is 100%.

Group of orthologs #148. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:7 P.kodakaraensis:125

Q5KKS4              	100.00%		Q5JIR7              	100.00%
Bootstrap support for Q5KKS4 as seed ortholog is 53%.
Alternative seed ortholog is Q5KMZ6 (7 bits away from this cluster)
Bootstrap support for Q5JIR7 as seed ortholog is 100%.

Group of orthologs #149. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.kodakaraensis:123

Q5KCI0              	100.00%		Q52366              	100.00%
Bootstrap support for Q5KCI0 as seed ortholog is 100%.
Bootstrap support for Q52366 as seed ortholog is 100%.

Group of orthologs #150. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.kodakaraensis:123

Q5K959              	100.00%		Q5JJF8              	100.00%
Bootstrap support for Q5K959 as seed ortholog is 99%.
Bootstrap support for Q5JJF8 as seed ortholog is 100%.

Group of orthologs #151. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.kodakaraensis:123

Q5KBW9              	100.00%		Q5JJG6              	100.00%
Bootstrap support for Q5KBW9 as seed ortholog is 100%.
Bootstrap support for Q5JJG6 as seed ortholog is 100%.

Group of orthologs #152. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.kodakaraensis:121

Q5KA28              	100.00%		Q5JHF7              	100.00%
                    	       		Q5JE68              	36.24%
Bootstrap support for Q5KA28 as seed ortholog is 100%.
Bootstrap support for Q5JHF7 as seed ortholog is 100%.

Group of orthologs #153. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.kodakaraensis:120

Q5K8Z0              	100.00%		Q5JCX7              	100.00%
                    	       		Q5JGS4              	19.90%
Bootstrap support for Q5K8Z0 as seed ortholog is 100%.
Bootstrap support for Q5JCX7 as seed ortholog is 100%.

Group of orthologs #154. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.kodakaraensis:120

Q5KDF2              	100.00%		Q5JER7              	100.00%
Bootstrap support for Q5KDF2 as seed ortholog is 100%.
Bootstrap support for Q5JER7 as seed ortholog is 100%.

Group of orthologs #155. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.kodakaraensis:64

Q5K808              	100.00%		Q5JEK8              	100.00%
Q5KLR5              	36.79%		
Bootstrap support for Q5K808 as seed ortholog is 100%.
Bootstrap support for Q5JEK8 as seed ortholog is 94%.

Group of orthologs #156. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.kodakaraensis:119

Q5KE92              	100.00%		Q5JGH7              	100.00%
Bootstrap support for Q5KE92 as seed ortholog is 100%.
Bootstrap support for Q5JGH7 as seed ortholog is 100%.

Group of orthologs #157. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.kodakaraensis:119

Q5KGW0              	100.00%		Q5JJF2              	100.00%
Bootstrap support for Q5KGW0 as seed ortholog is 99%.
Bootstrap support for Q5JJF2 as seed ortholog is 100%.

Group of orthologs #158. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.kodakaraensis:119

Q5KQ04              	100.00%		Q5JIB9              	100.00%
Bootstrap support for Q5KQ04 as seed ortholog is 100%.
Bootstrap support for Q5JIB9 as seed ortholog is 100%.

Group of orthologs #159. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.kodakaraensis:118

P0CP72              	100.00%		Q5JEZ6              	100.00%
Bootstrap support for P0CP72 as seed ortholog is 100%.
Bootstrap support for Q5JEZ6 as seed ortholog is 100%.

Group of orthologs #160. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.kodakaraensis:118

Q5K899              	100.00%		Q5JGI1              	100.00%
Bootstrap support for Q5K899 as seed ortholog is 100%.
Bootstrap support for Q5JGI1 as seed ortholog is 100%.

Group of orthologs #161. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.kodakaraensis:118

Q5KB97              	100.00%		Q5JFL7              	100.00%
Bootstrap support for Q5KB97 as seed ortholog is 100%.
Bootstrap support for Q5JFL7 as seed ortholog is 100%.

Group of orthologs #162. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.kodakaraensis:21

Q5KM94              	100.00%		Q5JES4              	100.00%
Bootstrap support for Q5KM94 as seed ortholog is 100%.
Bootstrap support for Q5JES4 as seed ortholog is 71%.
Alternative seed ortholog is Q5JJ47 (21 bits away from this cluster)

Group of orthologs #163. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.kodakaraensis:118

Q5KQ70              	100.00%		Q5JJG4              	100.00%
Bootstrap support for Q5KQ70 as seed ortholog is 100%.
Bootstrap support for Q5JJG4 as seed ortholog is 100%.

Group of orthologs #164. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.kodakaraensis:117

Q5KGP7              	100.00%		Q5JGG0              	100.00%
Bootstrap support for Q5KGP7 as seed ortholog is 100%.
Bootstrap support for Q5JGG0 as seed ortholog is 100%.

Group of orthologs #165. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.kodakaraensis:117

Q5KPR1              	100.00%		Q5JIP8              	100.00%
Bootstrap support for Q5KPR1 as seed ortholog is 100%.
Bootstrap support for Q5JIP8 as seed ortholog is 100%.

Group of orthologs #166. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.kodakaraensis:116

Q5KC51              	100.00%		Q5JE49              	100.00%
Bootstrap support for Q5KC51 as seed ortholog is 100%.
Bootstrap support for Q5JE49 as seed ortholog is 100%.

Group of orthologs #167. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.kodakaraensis:116

Q5KAS7              	100.00%		Q5JGT4              	100.00%
Bootstrap support for Q5KAS7 as seed ortholog is 100%.
Bootstrap support for Q5JGT4 as seed ortholog is 100%.

Group of orthologs #168. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.kodakaraensis:116

Q5KGX1              	100.00%		Q5JGQ6              	100.00%
Bootstrap support for Q5KGX1 as seed ortholog is 86%.
Bootstrap support for Q5JGQ6 as seed ortholog is 100%.

Group of orthologs #169. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.kodakaraensis:115

Q5KEX8              	100.00%		Q5JDH3              	100.00%
Bootstrap support for Q5KEX8 as seed ortholog is 100%.
Bootstrap support for Q5JDH3 as seed ortholog is 100%.

Group of orthologs #170. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.kodakaraensis:115

Q5KHM2              	100.00%		Q5JGG5              	100.00%
Bootstrap support for Q5KHM2 as seed ortholog is 100%.
Bootstrap support for Q5JGG5 as seed ortholog is 100%.

Group of orthologs #171. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:26 P.kodakaraensis:115

Q5KMV5              	100.00%		Q5JIX4              	100.00%
Bootstrap support for Q5KMV5 as seed ortholog is 75%.
Bootstrap support for Q5JIX4 as seed ortholog is 100%.

Group of orthologs #172. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.kodakaraensis:114

Q5KFF3              	100.00%		Q5JGN1              	100.00%
                    	       		P58109              	62.92%
Bootstrap support for Q5KFF3 as seed ortholog is 100%.
Bootstrap support for Q5JGN1 as seed ortholog is 100%.

Group of orthologs #173. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.kodakaraensis:113

Q5KED0              	100.00%		Q5JH42              	100.00%
                    	       		Q5JIB6              	19.54%
Bootstrap support for Q5KED0 as seed ortholog is 88%.
Bootstrap support for Q5JH42 as seed ortholog is 100%.

Group of orthologs #174. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.kodakaraensis:113

Q5KKX9              	100.00%		Q5JEM6              	100.00%
Bootstrap support for Q5KKX9 as seed ortholog is 60%.
Alternative seed ortholog is Q5K9N6 (55 bits away from this cluster)
Bootstrap support for Q5JEM6 as seed ortholog is 100%.

Group of orthologs #175. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.kodakaraensis:113

Q5KN44              	100.00%		Q5JIT6              	100.00%
Bootstrap support for Q5KN44 as seed ortholog is 100%.
Bootstrap support for Q5JIT6 as seed ortholog is 100%.

Group of orthologs #176. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.kodakaraensis:112

Q5KF07              	100.00%		Q5JH18              	100.00%
Bootstrap support for Q5KF07 as seed ortholog is 100%.
Bootstrap support for Q5JH18 as seed ortholog is 100%.

Group of orthologs #177. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.kodakaraensis:111

Q5KK76              	100.00%		Q5JGK8              	100.00%
Q5KDS4              	10.10%		
Bootstrap support for Q5KK76 as seed ortholog is 96%.
Bootstrap support for Q5JGK8 as seed ortholog is 100%.

Group of orthologs #178. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:36 P.kodakaraensis:111

Q5KLQ4              	100.00%		Q5JJ45              	100.00%
Q5KLR2              	59.07%		
Bootstrap support for Q5KLQ4 as seed ortholog is 82%.
Bootstrap support for Q5JJ45 as seed ortholog is 100%.

Group of orthologs #179. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.kodakaraensis:111

Q5K749              	100.00%		Q5JHN1              	100.00%
Bootstrap support for Q5K749 as seed ortholog is 60%.
Alternative seed ortholog is Q5KH77 (24 bits away from this cluster)
Bootstrap support for Q5JHN1 as seed ortholog is 100%.

Group of orthologs #180. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.kodakaraensis:111

Q5KA46              	100.00%		Q5JJF1              	100.00%
Bootstrap support for Q5KA46 as seed ortholog is 99%.
Bootstrap support for Q5JJF1 as seed ortholog is 100%.

Group of orthologs #181. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.kodakaraensis:111

Q5KMA6              	100.00%		Q5JDI6              	100.00%
Bootstrap support for Q5KMA6 as seed ortholog is 100%.
Bootstrap support for Q5JDI6 as seed ortholog is 100%.

Group of orthologs #182. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.kodakaraensis:111

Q5KM68              	100.00%		Q5JJE2              	100.00%
Bootstrap support for Q5KM68 as seed ortholog is 100%.
Bootstrap support for Q5JJE2 as seed ortholog is 100%.

Group of orthologs #183. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.kodakaraensis:109

Q5KJL2              	100.00%		Q5JD35              	100.00%
Bootstrap support for Q5KJL2 as seed ortholog is 100%.
Bootstrap support for Q5JD35 as seed ortholog is 100%.

Group of orthologs #184. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.kodakaraensis:108

Q5KDX8              	100.00%		O52958              	100.00%
Q5KCA3              	38.69%		
Bootstrap support for Q5KDX8 as seed ortholog is 100%.
Bootstrap support for O52958 as seed ortholog is 100%.

Group of orthologs #185. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:22 P.kodakaraensis:108

Q5KE84              	100.00%		Q5JFM9              	100.00%
                    	       		Q5JDZ9              	5.23%
Bootstrap support for Q5KE84 as seed ortholog is 56%.
Alternative seed ortholog is Q5KKV3 (22 bits away from this cluster)
Bootstrap support for Q5JFM9 as seed ortholog is 100%.

Group of orthologs #186. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.kodakaraensis:108

Q5KK01              	100.00%		Q5JEW5              	100.00%
Q5KBJ2              	5.04%		
Bootstrap support for Q5KK01 as seed ortholog is 100%.
Bootstrap support for Q5JEW5 as seed ortholog is 100%.

Group of orthologs #187. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.kodakaraensis:107

Q5K7B2              	100.00%		Q5JFJ9              	100.00%
Bootstrap support for Q5K7B2 as seed ortholog is 100%.
Bootstrap support for Q5JFJ9 as seed ortholog is 100%.

Group of orthologs #188. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.kodakaraensis:107

Q5KPF3              	100.00%		Q5JEX8              	100.00%
Bootstrap support for Q5KPF3 as seed ortholog is 100%.
Bootstrap support for Q5JEX8 as seed ortholog is 100%.

Group of orthologs #189. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:6 P.kodakaraensis:107

Q5KPU6              	100.00%		Q5JI09              	100.00%
Bootstrap support for Q5KPU6 as seed ortholog is 56%.
Alternative seed ortholog is Q5KKZ8 (6 bits away from this cluster)
Bootstrap support for Q5JI09 as seed ortholog is 100%.

Group of orthologs #190. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.kodakaraensis:104

Q5KIN6              	100.00%		Q5JDS2              	100.00%
Bootstrap support for Q5KIN6 as seed ortholog is 100%.
Bootstrap support for Q5JDS2 as seed ortholog is 100%.

Group of orthologs #191. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.kodakaraensis:104

Q5KL66              	100.00%		Q5JIR1              	100.00%
Bootstrap support for Q5KL66 as seed ortholog is 100%.
Bootstrap support for Q5JIR1 as seed ortholog is 100%.

Group of orthologs #192. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.kodakaraensis:102

Q5KBR9              	100.00%		Q5JDB8              	100.00%
Bootstrap support for Q5KBR9 as seed ortholog is 100%.
Bootstrap support for Q5JDB8 as seed ortholog is 100%.

Group of orthologs #193. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.kodakaraensis:102

Q5KGE3              	100.00%		Q5JH35              	100.00%
Bootstrap support for Q5KGE3 as seed ortholog is 100%.
Bootstrap support for Q5JH35 as seed ortholog is 100%.

Group of orthologs #194. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:26 P.kodakaraensis:101

Q5KBQ7              	100.00%		Q76CZ2              	100.00%
Bootstrap support for Q5KBQ7 as seed ortholog is 77%.
Bootstrap support for Q76CZ2 as seed ortholog is 100%.

Group of orthologs #195. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.kodakaraensis:101

Q5KJU2              	100.00%		Q5JJG7              	100.00%
Bootstrap support for Q5KJU2 as seed ortholog is 100%.
Bootstrap support for Q5JJG7 as seed ortholog is 100%.

Group of orthologs #196. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.kodakaraensis:100

Q5KIG6              	100.00%		Q5JJF4              	100.00%
Bootstrap support for Q5KIG6 as seed ortholog is 68%.
Alternative seed ortholog is Q5KG24 (19 bits away from this cluster)
Bootstrap support for Q5JJF4 as seed ortholog is 100%.

Group of orthologs #197. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.kodakaraensis:99

Q5KHN7              	100.00%		Q5JJB9              	100.00%
Q5KH19              	10.95%		Q5JFZ8              	14.27%
                    	       		Q5JGP4              	13.23%
Bootstrap support for Q5KHN7 as seed ortholog is 69%.
Alternative seed ortholog is Q5KKE2 (24 bits away from this cluster)
Bootstrap support for Q5JJB9 as seed ortholog is 100%.

Group of orthologs #198. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.kodakaraensis:99

Q5K7G9              	100.00%		Q5JGT2              	100.00%
                    	       		Q5JI45              	40.98%
Bootstrap support for Q5K7G9 as seed ortholog is 100%.
Bootstrap support for Q5JGT2 as seed ortholog is 100%.

Group of orthologs #199. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.kodakaraensis:99

Q5KBH4              	100.00%		O74035              	100.00%
Bootstrap support for Q5KBH4 as seed ortholog is 100%.
Bootstrap support for O74035 as seed ortholog is 100%.

Group of orthologs #200. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.kodakaraensis:98

Q5KPY2              	100.00%		Q5JHE3              	100.00%
Q5KLC5              	5.32%		Q5JF02              	6.31%
Bootstrap support for Q5KPY2 as seed ortholog is 70%.
Alternative seed ortholog is Q5K8F1 (17 bits away from this cluster)
Bootstrap support for Q5JHE3 as seed ortholog is 100%.

Group of orthologs #201. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:12 P.kodakaraensis:98

Q5KDE0              	100.00%		Q5JG47              	100.00%
Q5KA61              	8.59%		
Bootstrap support for Q5KDE0 as seed ortholog is 64%.
Alternative seed ortholog is Q5KPC9 (12 bits away from this cluster)
Bootstrap support for Q5JG47 as seed ortholog is 100%.

Group of orthologs #202. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.kodakaraensis:97

Q5K760              	100.00%		Q5JHB4              	100.00%
                    	       		Q5JER0              	20.09%
Bootstrap support for Q5K760 as seed ortholog is 100%.
Bootstrap support for Q5JHB4 as seed ortholog is 100%.

Group of orthologs #203. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.kodakaraensis:97

Q5K9H6              	100.00%		Q5JI34              	100.00%
Q5KGF6              	20.18%		
Bootstrap support for Q5K9H6 as seed ortholog is 100%.
Bootstrap support for Q5JI34 as seed ortholog is 100%.

Group of orthologs #204. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.kodakaraensis:97

Q5K9W6              	100.00%		Q5JIV0              	100.00%
Bootstrap support for Q5K9W6 as seed ortholog is 100%.
Bootstrap support for Q5JIV0 as seed ortholog is 100%.

Group of orthologs #205. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.kodakaraensis:97

Q5KFA8              	100.00%		Q5JJ50              	100.00%
Bootstrap support for Q5KFA8 as seed ortholog is 100%.
Bootstrap support for Q5JJ50 as seed ortholog is 100%.

Group of orthologs #206. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.kodakaraensis:97

Q5KJB8              	100.00%		Q5JIQ1              	100.00%
Bootstrap support for Q5KJB8 as seed ortholog is 100%.
Bootstrap support for Q5JIQ1 as seed ortholog is 100%.

Group of orthologs #207. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.kodakaraensis:97

Q5KNF1              	100.00%		Q5JGZ7              	100.00%
Bootstrap support for Q5KNF1 as seed ortholog is 100%.
Bootstrap support for Q5JGZ7 as seed ortholog is 100%.

Group of orthologs #208. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.kodakaraensis:96

Q5KIC1              	100.00%		Q5JFS0              	100.00%
                    	       		Q5JI38              	6.37%
Bootstrap support for Q5KIC1 as seed ortholog is 76%.
Bootstrap support for Q5JFS0 as seed ortholog is 100%.

Group of orthologs #209. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.kodakaraensis:96

P0CQ58              	100.00%		Q5JGM4              	100.00%
Bootstrap support for P0CQ58 as seed ortholog is 100%.
Bootstrap support for Q5JGM4 as seed ortholog is 100%.

Group of orthologs #210. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.kodakaraensis:96

P0CS08              	100.00%		Q5JGS7              	100.00%
Bootstrap support for P0CS08 as seed ortholog is 100%.
Bootstrap support for Q5JGS7 as seed ortholog is 100%.

Group of orthologs #211. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.kodakaraensis:96

Q5KMP7              	100.00%		Q5JHS0              	100.00%
Bootstrap support for Q5KMP7 as seed ortholog is 100%.
Bootstrap support for Q5JHS0 as seed ortholog is 100%.

Group of orthologs #212. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.kodakaraensis:96

Q5KLJ6              	100.00%		Q5JJF9              	100.00%
Bootstrap support for Q5KLJ6 as seed ortholog is 100%.
Bootstrap support for Q5JJF9 as seed ortholog is 100%.

Group of orthologs #213. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.kodakaraensis:95

Q5KEY3              	100.00%		Q5JGC7              	100.00%
Q5KBK5              	33.59%		
Q5K758              	20.14%		
Bootstrap support for Q5KEY3 as seed ortholog is 100%.
Bootstrap support for Q5JGC7 as seed ortholog is 100%.

Group of orthologs #214. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.kodakaraensis:95

P0CO22              	100.00%		Q5JFT0              	100.00%
Bootstrap support for P0CO22 as seed ortholog is 100%.
Bootstrap support for Q5JFT0 as seed ortholog is 100%.

Group of orthologs #215. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.kodakaraensis:95

Q5KCT3              	100.00%		Q5JI98              	100.00%
Bootstrap support for Q5KCT3 as seed ortholog is 100%.
Bootstrap support for Q5JI98 as seed ortholog is 100%.

Group of orthologs #216. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.kodakaraensis:95

Q5KCW6              	100.00%		Q5JI91              	100.00%
Bootstrap support for Q5KCW6 as seed ortholog is 100%.
Bootstrap support for Q5JI91 as seed ortholog is 100%.

Group of orthologs #217. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.kodakaraensis:94

Q5KFD9              	100.00%		Q5JDJ9              	100.00%
                    	       		Q5JHL8              	25.42%
Bootstrap support for Q5KFD9 as seed ortholog is 64%.
Alternative seed ortholog is Q5KKC2 (9 bits away from this cluster)
Bootstrap support for Q5JDJ9 as seed ortholog is 100%.

Group of orthologs #218. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.kodakaraensis:94

Q5KF86              	100.00%		Q5JD31              	100.00%
Bootstrap support for Q5KF86 as seed ortholog is 100%.
Bootstrap support for Q5JD31 as seed ortholog is 100%.

Group of orthologs #219. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.kodakaraensis:93

Q5K7B5              	100.00%		Q68BJ6              	100.00%
                    	       		Q68BJ7              	32.43%
                    	       		Q6I7B6              	28.59%
Bootstrap support for Q5K7B5 as seed ortholog is 100%.
Bootstrap support for Q68BJ6 as seed ortholog is 100%.

Group of orthologs #220. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.kodakaraensis:91

Q5K7J3              	100.00%		Q5JJG5              	100.00%
Bootstrap support for Q5K7J3 as seed ortholog is 100%.
Bootstrap support for Q5JJG5 as seed ortholog is 100%.

Group of orthologs #221. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:4 P.kodakaraensis:91

Q5KMF3              	100.00%		Q5JH34              	100.00%
Bootstrap support for Q5KMF3 as seed ortholog is 56%.
Alternative seed ortholog is Q5KJC9 (4 bits away from this cluster)
Bootstrap support for Q5JH34 as seed ortholog is 100%.

Group of orthologs #222. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.kodakaraensis:91

Q5KQ17              	100.00%		Q5JIR5              	100.00%
Bootstrap support for Q5KQ17 as seed ortholog is 93%.
Bootstrap support for Q5JIR5 as seed ortholog is 100%.

Group of orthologs #223. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.kodakaraensis:90

Q5KCS8              	100.00%		Q5JFI2              	100.00%
Q5KF65              	40.29%		
Q5KD72              	36.03%		
Q5KKR8              	32.88%		
Q5K8L3              	7.63%		
Bootstrap support for Q5KCS8 as seed ortholog is 100%.
Bootstrap support for Q5JFI2 as seed ortholog is 100%.

Group of orthologs #224. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.kodakaraensis:89

Q5KJL6              	100.00%		Q5JGN5              	100.00%
Bootstrap support for Q5KJL6 as seed ortholog is 100%.
Bootstrap support for Q5JGN5 as seed ortholog is 100%.

Group of orthologs #225. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.kodakaraensis:89

Q5KJ42              	100.00%		Q5JJ91              	100.00%
Bootstrap support for Q5KJ42 as seed ortholog is 72%.
Alternative seed ortholog is Q5KNB0 (33 bits away from this cluster)
Bootstrap support for Q5JJ91 as seed ortholog is 100%.

Group of orthologs #226. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.kodakaraensis:87

Q5K9N0              	100.00%		Q5JFR2              	100.00%
Bootstrap support for Q5K9N0 as seed ortholog is 100%.
Bootstrap support for Q5JFR2 as seed ortholog is 100%.

Group of orthologs #227. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.kodakaraensis:87

Q5KNH2              	100.00%		Q5JDH9              	100.00%
Bootstrap support for Q5KNH2 as seed ortholog is 100%.
Bootstrap support for Q5JDH9 as seed ortholog is 100%.

Group of orthologs #228. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.kodakaraensis:86

Q5KGI2              	100.00%		Q5JDB4              	100.00%
                    	       		Q5JDP5              	14.62%
                    	       		Q5JEW7              	11.92%
                    	       		Q5JI15              	6.27%
                    	       		Q5JCY9              	5.90%
Bootstrap support for Q5KGI2 as seed ortholog is 100%.
Bootstrap support for Q5JDB4 as seed ortholog is 100%.

Group of orthologs #229. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.kodakaraensis:86

P0CQ52              	100.00%		Q5JGR3              	100.00%
Bootstrap support for P0CQ52 as seed ortholog is 100%.
Bootstrap support for Q5JGR3 as seed ortholog is 100%.

Group of orthologs #230. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.kodakaraensis:86

Q5KAD9              	100.00%		Q5JIS3              	100.00%
Bootstrap support for Q5KAD9 as seed ortholog is 100%.
Bootstrap support for Q5JIS3 as seed ortholog is 100%.

Group of orthologs #231. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.kodakaraensis:85

Q5KL89              	100.00%		Q5JDH1              	100.00%
Bootstrap support for Q5KL89 as seed ortholog is 100%.
Bootstrap support for Q5JDH1 as seed ortholog is 100%.

Group of orthologs #232. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.kodakaraensis:85

Q5KHZ2              	100.00%		Q5JIA1              	100.00%
Bootstrap support for Q5KHZ2 as seed ortholog is 100%.
Bootstrap support for Q5JIA1 as seed ortholog is 100%.

Group of orthologs #233. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.kodakaraensis:84

Q5K932              	100.00%		Q5JEU9              	100.00%
Bootstrap support for Q5K932 as seed ortholog is 55%.
Alternative seed ortholog is Q5KJU9 (11 bits away from this cluster)
Bootstrap support for Q5JEU9 as seed ortholog is 100%.

Group of orthologs #234. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.kodakaraensis:84

Q5KCP8              	100.00%		Q5JJ98              	100.00%
Bootstrap support for Q5KCP8 as seed ortholog is 63%.
Alternative seed ortholog is Q5KKF5 (5 bits away from this cluster)
Bootstrap support for Q5JJ98 as seed ortholog is 100%.

Group of orthologs #235. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.kodakaraensis:82

Q5KML2              	100.00%		Q5JFR4              	100.00%
                    	       		Q5JHW0              	39.21%
                    	       		Q5JG42              	10.26%
Bootstrap support for Q5KML2 as seed ortholog is 100%.
Bootstrap support for Q5JFR4 as seed ortholog is 100%.

Group of orthologs #236. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.kodakaraensis:82

Q5KIP0              	100.00%		Q5JJE5              	100.00%
Q5KJ03              	18.25%		
Bootstrap support for Q5KIP0 as seed ortholog is 68%.
Alternative seed ortholog is P0CR34 (15 bits away from this cluster)
Bootstrap support for Q5JJE5 as seed ortholog is 100%.

Group of orthologs #237. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.kodakaraensis:82

Q5KKY5              	100.00%		Q5JFZ5              	100.00%
Bootstrap support for Q5KKY5 as seed ortholog is 100%.
Bootstrap support for Q5JFZ5 as seed ortholog is 100%.

Group of orthologs #238. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.kodakaraensis:81

Q5K6Z0              	100.00%		Q5JDH4              	100.00%
Bootstrap support for Q5K6Z0 as seed ortholog is 100%.
Bootstrap support for Q5JDH4 as seed ortholog is 100%.

Group of orthologs #239. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:39 P.kodakaraensis:81

Q5K7I5              	100.00%		Q5JJF6              	100.00%
Bootstrap support for Q5K7I5 as seed ortholog is 94%.
Bootstrap support for Q5JJF6 as seed ortholog is 100%.

Group of orthologs #240. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.kodakaraensis:81

Q5KHU5              	100.00%		Q5JHH1              	100.00%
Bootstrap support for Q5KHU5 as seed ortholog is 100%.
Bootstrap support for Q5JHH1 as seed ortholog is 100%.

Group of orthologs #241. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.kodakaraensis:80

Q5KNU9              	100.00%		Q5JHW2              	100.00%
                    	       		Q5JEX9              	31.11%
                    	       		Q5JGT0              	20.48%
                    	       		Q5JIW7              	19.05%
Bootstrap support for Q5KNU9 as seed ortholog is 100%.
Bootstrap support for Q5JHW2 as seed ortholog is 100%.

Group of orthologs #242. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.kodakaraensis:80

Q5K8F5              	100.00%		Q5JIZ7              	100.00%
Q5KCX2              	19.09%		
Q5KNK5              	10.30%		
Bootstrap support for Q5K8F5 as seed ortholog is 100%.
Bootstrap support for Q5JIZ7 as seed ortholog is 100%.

Group of orthologs #243. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.kodakaraensis:80

Q5KM24              	100.00%		Q5JEE1              	100.00%
Bootstrap support for Q5KM24 as seed ortholog is 100%.
Bootstrap support for Q5JEE1 as seed ortholog is 100%.

Group of orthologs #244. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.kodakaraensis:79

Q5KDP4              	100.00%		Q5JIQ0              	100.00%
Bootstrap support for Q5KDP4 as seed ortholog is 100%.
Bootstrap support for Q5JIQ0 as seed ortholog is 100%.

Group of orthologs #245. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.kodakaraensis:78

Q5K7Y2              	100.00%		Q5JF32              	100.00%
                    	       		Q5JFD3              	47.51%
Bootstrap support for Q5K7Y2 as seed ortholog is 100%.
Bootstrap support for Q5JF32 as seed ortholog is 100%.

Group of orthologs #246. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.kodakaraensis:78

Q5KHF9              	100.00%		Q5JIY3              	100.00%
Bootstrap support for Q5KHF9 as seed ortholog is 100%.
Bootstrap support for Q5JIY3 as seed ortholog is 100%.

Group of orthologs #247. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.kodakaraensis:78

Q5KM63              	100.00%		Q5JIE9              	100.00%
Bootstrap support for Q5KM63 as seed ortholog is 100%.
Bootstrap support for Q5JIE9 as seed ortholog is 100%.

Group of orthologs #248. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.kodakaraensis:77

P0CN18              	100.00%		Q5JET7              	100.00%
Bootstrap support for P0CN18 as seed ortholog is 100%.
Bootstrap support for Q5JET7 as seed ortholog is 100%.

Group of orthologs #249. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.kodakaraensis:76

Q5KIW5              	100.00%		Q5JFR6              	100.00%
Bootstrap support for Q5KIW5 as seed ortholog is 100%.
Bootstrap support for Q5JFR6 as seed ortholog is 100%.

Group of orthologs #250. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.kodakaraensis:76

Q5KLK6              	100.00%		Q5JDM6              	100.00%
Bootstrap support for Q5KLK6 as seed ortholog is 100%.
Bootstrap support for Q5JDM6 as seed ortholog is 100%.

Group of orthologs #251. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.kodakaraensis:76

Q5KGT6              	100.00%		Q5JJB4              	100.00%
Bootstrap support for Q5KGT6 as seed ortholog is 100%.
Bootstrap support for Q5JJB4 as seed ortholog is 100%.

Group of orthologs #252. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.kodakaraensis:75

Q5KAU4              	100.00%		Q5JDG1              	100.00%
Bootstrap support for Q5KAU4 as seed ortholog is 100%.
Bootstrap support for Q5JDG1 as seed ortholog is 100%.

Group of orthologs #253. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.kodakaraensis:75

Q5KNB6              	100.00%		Q5JDW2              	100.00%
Bootstrap support for Q5KNB6 as seed ortholog is 100%.
Bootstrap support for Q5JDW2 as seed ortholog is 100%.

Group of orthologs #254. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.kodakaraensis:74

Q5KG59              	100.00%		Q5JIG9              	100.00%
                    	       		Q5JDD3              	29.38%
                    	       		Q5JG70              	25.95%
                    	       		Q5JCX0              	22.85%
                    	       		Q5JIN8              	19.24%
                    	       		Q5JFR9              	18.56%
                    	       		Q5JGV1              	17.18%
                    	       		Q5JG38              	15.64%
                    	       		Q5JDA7              	14.95%
                    	       		Q5JIB0              	12.54%
                    	       		Q5JDQ2              	12.37%
                    	       		Q5JE43              	11.51%
                    	       		Q5JIG1              	10.14%
                    	       		Q5JHD4              	9.45%
                    	       		Q5JEP9              	9.45%
                    	       		Q5JHJ6              	8.42%
                    	       		Q5JH77              	7.22%
                    	       		Q5JEM4              	7.22%
Bootstrap support for Q5KG59 as seed ortholog is 100%.
Bootstrap support for Q5JIG9 as seed ortholog is 100%.

Group of orthologs #255. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.kodakaraensis:74

Q5K9Q9              	100.00%		Q5JEB0              	100.00%
                    	       		Q5JG78              	34.21%
                    	       		Q5JFJ1              	30.88%
                    	       		Q5JJ54              	25.79%
                    	       		Q5JF59              	25.09%
                    	       		Q5JJ96              	9.30%
                    	       		Q5JDU2              	6.32%
                    	       		Q5JDD9              	5.96%
                    	       		Q5JG56              	5.26%
                    	       		Q5JJ95              	5.26%
Bootstrap support for Q5K9Q9 as seed ortholog is 100%.
Bootstrap support for Q5JEB0 as seed ortholog is 100%.

Group of orthologs #256. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.kodakaraensis:74

Q5KK06              	100.00%		Q5JDZ1              	100.00%
Bootstrap support for Q5KK06 as seed ortholog is 71%.
Alternative seed ortholog is Q5KEB3 (11 bits away from this cluster)
Bootstrap support for Q5JDZ1 as seed ortholog is 100%.

Group of orthologs #257. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.kodakaraensis:74

Q5KMS2              	100.00%		Q5JJC9              	100.00%
Bootstrap support for Q5KMS2 as seed ortholog is 100%.
Bootstrap support for Q5JJC9 as seed ortholog is 100%.

Group of orthologs #258. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.kodakaraensis:73

Q5KJX0              	100.00%		Q5JFL6              	100.00%
Q5KDV3              	82.42%		
Bootstrap support for Q5KJX0 as seed ortholog is 100%.
Bootstrap support for Q5JFL6 as seed ortholog is 100%.

Group of orthologs #259. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.kodakaraensis:73

Q5KP36              	100.00%		Q5JIQ8              	100.00%
Bootstrap support for Q5KP36 as seed ortholog is 100%.
Bootstrap support for Q5JIQ8 as seed ortholog is 100%.

Group of orthologs #260. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.kodakaraensis:72

Q5KNW1              	100.00%		Q5JDE4              	100.00%
Bootstrap support for Q5KNW1 as seed ortholog is 100%.
Bootstrap support for Q5JDE4 as seed ortholog is 100%.

Group of orthologs #261. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.kodakaraensis:71

Q5KEF1              	100.00%		Q5JF34              	100.00%
Bootstrap support for Q5KEF1 as seed ortholog is 74%.
Alternative seed ortholog is Q5KKH5 (17 bits away from this cluster)
Bootstrap support for Q5JF34 as seed ortholog is 100%.

Group of orthologs #262. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.kodakaraensis:71

Q5KAT3              	100.00%		Q5JJ61              	100.00%
Bootstrap support for Q5KAT3 as seed ortholog is 100%.
Bootstrap support for Q5JJ61 as seed ortholog is 100%.

Group of orthologs #263. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.kodakaraensis:27

Q5KJG6              	100.00%		Q5JHE4              	100.00%
Bootstrap support for Q5KJG6 as seed ortholog is 100%.
Bootstrap support for Q5JHE4 as seed ortholog is 74%.
Alternative seed ortholog is Q5JG52 (27 bits away from this cluster)

Group of orthologs #264. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.kodakaraensis:70

Q5K9M8              	100.00%		Q5JHM0              	100.00%
Q5KGT7              	100.00%		Q5JJC2              	16.86%
Q5K9Z3              	55.44%		
Bootstrap support for Q5K9M8 as seed ortholog is 100%.
Bootstrap support for Q5KGT7 as seed ortholog is 100%.
Bootstrap support for Q5JHM0 as seed ortholog is 100%.

Group of orthologs #265. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.kodakaraensis:70

Q5KCD7              	100.00%		Q5JER1              	100.00%
Bootstrap support for Q5KCD7 as seed ortholog is 100%.
Bootstrap support for Q5JER1 as seed ortholog is 100%.

Group of orthologs #266. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.kodakaraensis:70

Q5KBD4              	100.00%		Q5JH53              	100.00%
Bootstrap support for Q5KBD4 as seed ortholog is 100%.
Bootstrap support for Q5JH53 as seed ortholog is 100%.

Group of orthologs #267. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.kodakaraensis:70

Q5KK13              	100.00%		Q5JH21              	100.00%
Bootstrap support for Q5KK13 as seed ortholog is 100%.
Bootstrap support for Q5JH21 as seed ortholog is 100%.

Group of orthologs #268. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:2 P.kodakaraensis:69

Q5KBZ4              	100.00%		Q5JFG7              	100.00%
Q5KDJ8              	100.00%		Q5JFG2              	100.00%
Q5KEQ6              	20.10%		
Q5K7G6              	18.90%		
Bootstrap support for Q5KBZ4 as seed ortholog is 74%.
Alternative seed ortholog is Q5KIU1 (2 bits away from this cluster)
Bootstrap support for Q5KDJ8 as seed ortholog is 56%.
Alternative seed ortholog is Q5KIU1 (2 bits away from this cluster)
Bootstrap support for Q5JFG7 as seed ortholog is 100%.
Bootstrap support for Q5JFG2 as seed ortholog is 100%.

Group of orthologs #269. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.kodakaraensis:69

Q5KHT0              	100.00%		Q5JI42              	100.00%
Bootstrap support for Q5KHT0 as seed ortholog is 100%.
Bootstrap support for Q5JI42 as seed ortholog is 100%.

Group of orthologs #270. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.kodakaraensis:67

Q5K8I1              	100.00%		Q5JFW9              	100.00%
Q5KP83              	14.63%		
Bootstrap support for Q5K8I1 as seed ortholog is 100%.
Bootstrap support for Q5JFW9 as seed ortholog is 100%.

Group of orthologs #271. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.kodakaraensis:67

Q5KE72              	100.00%		Q5JGZ1              	100.00%
                    	       		Q5JH08              	9.08%
Bootstrap support for Q5KE72 as seed ortholog is 100%.
Bootstrap support for Q5JGZ1 as seed ortholog is 100%.

Group of orthologs #272. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.kodakaraensis:67

Q5KPM8              	100.00%		Q5JE35              	100.00%
Bootstrap support for Q5KPM8 as seed ortholog is 100%.
Bootstrap support for Q5JE35 as seed ortholog is 100%.

Group of orthologs #273. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.kodakaraensis:66

Q5KI04              	100.00%		Q5JEB7              	100.00%
Bootstrap support for Q5KI04 as seed ortholog is 100%.
Bootstrap support for Q5JEB7 as seed ortholog is 100%.

Group of orthologs #274. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.kodakaraensis:64

P0CQ50              	100.00%		Q5JE51              	100.00%
Bootstrap support for P0CQ50 as seed ortholog is 100%.
Bootstrap support for Q5JE51 as seed ortholog is 100%.

Group of orthologs #275. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.kodakaraensis:64

Q5KHJ3              	100.00%		Q5JGR4              	100.00%
Bootstrap support for Q5KHJ3 as seed ortholog is 100%.
Bootstrap support for Q5JGR4 as seed ortholog is 100%.

Group of orthologs #276. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.kodakaraensis:63

Q5KJV0              	100.00%		Q5JFK1              	100.00%
Q5KNW6              	23.72%		
Q5KP01              	17.79%		
Bootstrap support for Q5KJV0 as seed ortholog is 100%.
Bootstrap support for Q5JFK1 as seed ortholog is 100%.

Group of orthologs #277. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.kodakaraensis:63

Q5KJI4              	100.00%		Q5JDB1              	100.00%
Bootstrap support for Q5KJI4 as seed ortholog is 100%.
Bootstrap support for Q5JDB1 as seed ortholog is 100%.

Group of orthologs #278. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.kodakaraensis:63

Q5KG23              	100.00%		Q5JHP6              	100.00%
Bootstrap support for Q5KG23 as seed ortholog is 69%.
Alternative seed ortholog is Q5KE19 (11 bits away from this cluster)
Bootstrap support for Q5JHP6 as seed ortholog is 100%.

Group of orthologs #279. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.kodakaraensis:63

Q5KK62              	100.00%		Q5JHR7              	100.00%
Bootstrap support for Q5KK62 as seed ortholog is 100%.
Bootstrap support for Q5JHR7 as seed ortholog is 100%.

Group of orthologs #280. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.kodakaraensis:62

Q5K9Y4              	100.00%		Q5JHS3              	100.00%
Bootstrap support for Q5K9Y4 as seed ortholog is 100%.
Bootstrap support for Q5JHS3 as seed ortholog is 100%.

Group of orthologs #281. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.kodakaraensis:62

Q5KDN1              	100.00%		Q5JFK7              	100.00%
Bootstrap support for Q5KDN1 as seed ortholog is 100%.
Bootstrap support for Q5JFK7 as seed ortholog is 100%.

Group of orthologs #282. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.kodakaraensis:62

Q5KCJ7              	100.00%		Q5JGN3              	100.00%
Bootstrap support for Q5KCJ7 as seed ortholog is 100%.
Bootstrap support for Q5JGN3 as seed ortholog is 100%.

Group of orthologs #283. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.kodakaraensis:62

Q5KMA0              	100.00%		Q5JJH0              	100.00%
Bootstrap support for Q5KMA0 as seed ortholog is 100%.
Bootstrap support for Q5JJH0 as seed ortholog is 100%.

Group of orthologs #284. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.kodakaraensis:62

Q5KNI6              	100.00%		Q5JJG9              	100.00%
Bootstrap support for Q5KNI6 as seed ortholog is 100%.
Bootstrap support for Q5JJG9 as seed ortholog is 100%.

Group of orthologs #285. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.kodakaraensis:61

Q5KCI8              	100.00%		Q5JH78              	100.00%
Bootstrap support for Q5KCI8 as seed ortholog is 100%.
Bootstrap support for Q5JH78 as seed ortholog is 100%.

Group of orthologs #286. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.kodakaraensis:61

Q5KC95              	100.00%		Q5JI90              	100.00%
Bootstrap support for Q5KC95 as seed ortholog is 100%.
Bootstrap support for Q5JI90 as seed ortholog is 100%.

Group of orthologs #287. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.kodakaraensis:60

Q5KC13              	100.00%		Q5JI92              	100.00%
Bootstrap support for Q5KC13 as seed ortholog is 100%.
Bootstrap support for Q5JI92 as seed ortholog is 100%.

Group of orthologs #288. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.kodakaraensis:59

P0CS95              	100.00%		Q5JHF4              	100.00%
Bootstrap support for P0CS95 as seed ortholog is 100%.
Bootstrap support for Q5JHF4 as seed ortholog is 100%.

Group of orthologs #289. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.kodakaraensis:58

Q5KIC5              	100.00%		Q5JJF5              	100.00%
Bootstrap support for Q5KIC5 as seed ortholog is 100%.
Bootstrap support for Q5JJF5 as seed ortholog is 100%.

Group of orthologs #290. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.kodakaraensis:57

Q5KKG2              	100.00%		Q5JH93              	100.00%
Q5KDQ6              	22.44%		
Bootstrap support for Q5KKG2 as seed ortholog is 100%.
Bootstrap support for Q5JH93 as seed ortholog is 100%.

Group of orthologs #291. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:16 P.kodakaraensis:57

Q5KLA4              	100.00%		Q5JIU7              	100.00%
                    	       		Q5JI19              	20.53%
Bootstrap support for Q5KLA4 as seed ortholog is 78%.
Bootstrap support for Q5JIU7 as seed ortholog is 100%.

Group of orthologs #292. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.kodakaraensis:57

Q5KCV9              	100.00%		Q5JG26              	100.00%
Bootstrap support for Q5KCV9 as seed ortholog is 100%.
Bootstrap support for Q5JG26 as seed ortholog is 100%.

Group of orthologs #293. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.kodakaraensis:57

Q5KHZ6              	100.00%		Q5JIY4              	100.00%
Bootstrap support for Q5KHZ6 as seed ortholog is 100%.
Bootstrap support for Q5JIY4 as seed ortholog is 100%.

Group of orthologs #294. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.kodakaraensis:57

Q5KPS5              	100.00%		Q5JDC4              	100.00%
Bootstrap support for Q5KPS5 as seed ortholog is 100%.
Bootstrap support for Q5JDC4 as seed ortholog is 100%.

Group of orthologs #295. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.kodakaraensis:56

Q5KDM7              	100.00%		Q5JFH5              	100.00%
                    	       		Q5JHR1              	8.25%
Bootstrap support for Q5KDM7 as seed ortholog is 100%.
Bootstrap support for Q5JFH5 as seed ortholog is 100%.

Group of orthologs #296. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.kodakaraensis:56

Q5KHQ2              	100.00%		Q5JGT6              	100.00%
Bootstrap support for Q5KHQ2 as seed ortholog is 100%.
Bootstrap support for Q5JGT6 as seed ortholog is 100%.

Group of orthologs #297. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.kodakaraensis:54

Q5KCX5              	100.00%		Q5JIP5              	100.00%
Bootstrap support for Q5KCX5 as seed ortholog is 100%.
Bootstrap support for Q5JIP5 as seed ortholog is 100%.

Group of orthologs #298. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.kodakaraensis:53

Q5KHG0              	100.00%		Q5JJ42              	100.00%
                    	       		Q5JEY7              	5.77%
Bootstrap support for Q5KHG0 as seed ortholog is 100%.
Bootstrap support for Q5JJ42 as seed ortholog is 100%.

Group of orthologs #299. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:4 P.kodakaraensis:53

Q5KBI8              	100.00%		Q5JF69              	100.00%
Bootstrap support for Q5KBI8 as seed ortholog is 54%.
Alternative seed ortholog is Q5KJ82 (4 bits away from this cluster)
Bootstrap support for Q5JF69 as seed ortholog is 100%.

Group of orthologs #300. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.kodakaraensis:53

Q5KN25              	100.00%		Q5JJF7              	100.00%
Bootstrap support for Q5KN25 as seed ortholog is 100%.
Bootstrap support for Q5JJF7 as seed ortholog is 100%.

Group of orthologs #301. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.kodakaraensis:52

Q5KK46              	100.00%		Q5JJG2              	100.00%
Bootstrap support for Q5KK46 as seed ortholog is 100%.
Bootstrap support for Q5JJG2 as seed ortholog is 100%.

Group of orthologs #302. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KIC3              	100.00%		Q76CZ1              	100.00%
Q5KD34              	59.49%		
Q5KMI1              	31.73%		
Q5KCJ4              	31.63%		
Q5K8T4              	30.22%		
Q5KIR0              	11.90%		
Bootstrap support for Q5KIC3 as seed ortholog is 100%.
Bootstrap support for Q76CZ1 as seed ortholog is 100%.

Group of orthologs #303. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KP80              	100.00%		Q5JHM7              	100.00%
                    	       		Q5JEC0              	36.16%
Bootstrap support for Q5KP80 as seed ortholog is 100%.
Bootstrap support for Q5JHM7 as seed ortholog is 100%.

Group of orthologs #304. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5K9M5              	100.00%		Q5JHT3              	100.00%
Bootstrap support for Q5K9M5 as seed ortholog is 100%.
Bootstrap support for Q5JHT3 as seed ortholog is 100%.

Group of orthologs #305. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KDU6              	100.00%		Q5JE50              	100.00%
Bootstrap support for Q5KDU6 as seed ortholog is 100%.
Bootstrap support for Q5JE50 as seed ortholog is 100%.

Group of orthologs #306. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KGS8              	100.00%		Q5JDG9              	100.00%
Bootstrap support for Q5KGS8 as seed ortholog is 100%.
Bootstrap support for Q5JDG9 as seed ortholog is 100%.

Group of orthologs #307. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KH50              	100.00%		Q5JG15              	100.00%
Bootstrap support for Q5KH50 as seed ortholog is 100%.
Bootstrap support for Q5JG15 as seed ortholog is 100%.

Group of orthologs #308. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KP39              	100.00%		Q5JDR9              	100.00%
Bootstrap support for Q5KP39 as seed ortholog is 100%.
Bootstrap support for Q5JDR9 as seed ortholog is 100%.

Group of orthologs #309. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.kodakaraensis:50

Q5KL56              	100.00%		Q5JIE1              	100.00%
Bootstrap support for Q5KL56 as seed ortholog is 100%.
Bootstrap support for Q5JIE1 as seed ortholog is 100%.

Group of orthologs #310. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.kodakaraensis:49

P0CP94              	100.00%		Q5JEN3              	100.00%
P0CP96              	30.90%		
Bootstrap support for P0CP94 as seed ortholog is 100%.
Bootstrap support for Q5JEN3 as seed ortholog is 100%.

Group of orthologs #311. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.kodakaraensis:49

Q5K9C9              	100.00%		Q5JE63              	100.00%
                    	       		Q5JIE3              	5.83%
Bootstrap support for Q5K9C9 as seed ortholog is 100%.
Bootstrap support for Q5JE63 as seed ortholog is 100%.

Group of orthologs #312. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.kodakaraensis:49

P0CO46              	100.00%		Q5JH80              	100.00%
Bootstrap support for P0CO46 as seed ortholog is 100%.
Bootstrap support for Q5JH80 as seed ortholog is 100%.

Group of orthologs #313. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.kodakaraensis:49

Q5KFB4              	100.00%		Q5JGC2              	100.00%
Bootstrap support for Q5KFB4 as seed ortholog is 100%.
Bootstrap support for Q5JGC2 as seed ortholog is 100%.

Group of orthologs #314. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.kodakaraensis:49

Q5KEW6              	100.00%		Q5JHS9              	100.00%
Bootstrap support for Q5KEW6 as seed ortholog is 100%.
Bootstrap support for Q5JHS9 as seed ortholog is 100%.

Group of orthologs #315. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.kodakaraensis:48

Q5KE15              	100.00%		Q5JIA8              	100.00%
                    	       		Q5JEN7              	42.94%
                    	       		Q5JEY6              	36.84%
                    	       		Q5JFH7              	36.38%
                    	       		Q5JEW2              	31.98%
Bootstrap support for Q5KE15 as seed ortholog is 100%.
Bootstrap support for Q5JIA8 as seed ortholog is 100%.

Group of orthologs #316. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.kodakaraensis:47

Q5KIV2              	100.00%		Q5JE86              	100.00%
Bootstrap support for Q5KIV2 as seed ortholog is 100%.
Bootstrap support for Q5JE86 as seed ortholog is 100%.

Group of orthologs #317. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.kodakaraensis:45

Q5KM89              	100.00%		Q5JJ90              	100.00%
P0CP14              	100.00%		Q8NKS4              	100.00%
Q5KCJ5              	22.87%		
Bootstrap support for Q5KM89 as seed ortholog is 100%.
Bootstrap support for P0CP14 as seed ortholog is 100%.
Bootstrap support for Q5JJ90 as seed ortholog is 100%.
Bootstrap support for Q8NKS4 as seed ortholog is 100%.

Group of orthologs #318. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.kodakaraensis:45

Q5K8X7              	100.00%		Q5JIX8              	100.00%
                    	       		Q5JJF0              	8.33%
Bootstrap support for Q5K8X7 as seed ortholog is 100%.
Bootstrap support for Q5JIX8 as seed ortholog is 100%.

Group of orthologs #319. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.kodakaraensis:45

Q5KBD5              	100.00%		Q5JIE0              	100.00%
Bootstrap support for Q5KBD5 as seed ortholog is 52%.
Alternative seed ortholog is Q5KN63 (1 bits away from this cluster)
Bootstrap support for Q5JIE0 as seed ortholog is 100%.

Group of orthologs #320. Best score 43 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.kodakaraensis:43

Q5KPC0              	100.00%		Q5JGE0              	100.00%
Bootstrap support for Q5KPC0 as seed ortholog is 100%.
Bootstrap support for Q5JGE0 as seed ortholog is 100%.

Group of orthologs #321. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.kodakaraensis:42

Q5KBN1              	100.00%		Q5JGZ2              	100.00%
Q5KEW1              	32.65%		Q5JGZ3              	10.09%
Bootstrap support for Q5KBN1 as seed ortholog is 100%.
Bootstrap support for Q5JGZ2 as seed ortholog is 100%.

Group of orthologs #322. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.kodakaraensis:42

Q5KF63              	100.00%		Q5JIR4              	100.00%
Bootstrap support for Q5KF63 as seed ortholog is 100%.
Bootstrap support for Q5JIR4 as seed ortholog is 100%.