###################################
1019 groups of orthologs
1136 in-paralogs from C.neoformans
1049 in-paralogs from P.knowlesi
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3244 bits
Score difference with first non-orthologous sequence - C.neoformans:3244 P.knowlesi:2157

Q5KFR9              	100.00%		B3KZT8              	100.00%
Bootstrap support for Q5KFR9 as seed ortholog is 100%.
Bootstrap support for B3KZT8 as seed ortholog is 100%.

Group of orthologs #2. Best score 3212 bits
Score difference with first non-orthologous sequence - C.neoformans:3212 P.knowlesi:3212

Q5KPW2              	100.00%		B3KZY4              	100.00%
Bootstrap support for Q5KPW2 as seed ortholog is 100%.
Bootstrap support for B3KZY4 as seed ortholog is 100%.

Group of orthologs #3. Best score 1442 bits
Score difference with first non-orthologous sequence - C.neoformans:1442 P.knowlesi:1442

Q5KGG3              	100.00%		B3L428              	100.00%
Bootstrap support for Q5KGG3 as seed ortholog is 100%.
Bootstrap support for B3L428 as seed ortholog is 100%.

Group of orthologs #4. Best score 1330 bits
Score difference with first non-orthologous sequence - C.neoformans:358 P.knowlesi:1330

Q5KNM2              	100.00%		B3LBP4              	100.00%
Bootstrap support for Q5KNM2 as seed ortholog is 100%.
Bootstrap support for B3LBP4 as seed ortholog is 100%.

Group of orthologs #5. Best score 1296 bits
Score difference with first non-orthologous sequence - C.neoformans:688 P.knowlesi:595

Q5KET5              	100.00%		B3L1P3              	100.00%
Bootstrap support for Q5KET5 as seed ortholog is 100%.
Bootstrap support for B3L1P3 as seed ortholog is 100%.

Group of orthologs #6. Best score 1178 bits
Score difference with first non-orthologous sequence - C.neoformans:1178 P.knowlesi:1178

Q5KIB7              	100.00%		B3L0J5              	100.00%
Bootstrap support for Q5KIB7 as seed ortholog is 100%.
Bootstrap support for B3L0J5 as seed ortholog is 100%.

Group of orthologs #7. Best score 1127 bits
Score difference with first non-orthologous sequence - C.neoformans:1127 P.knowlesi:1127

Q5KA63              	100.00%		B3LBE1              	100.00%
Bootstrap support for Q5KA63 as seed ortholog is 100%.
Bootstrap support for B3LBE1 as seed ortholog is 100%.

Group of orthologs #8. Best score 1121 bits
Score difference with first non-orthologous sequence - C.neoformans:1121 P.knowlesi:1121

Q5KC33              	100.00%		B3LB54              	100.00%
Bootstrap support for Q5KC33 as seed ortholog is 100%.
Bootstrap support for B3LB54 as seed ortholog is 100%.

Group of orthologs #9. Best score 1100 bits
Score difference with first non-orthologous sequence - C.neoformans:1100 P.knowlesi:1100

Q5KP97              	100.00%		B3LBF9              	100.00%
Bootstrap support for Q5KP97 as seed ortholog is 100%.
Bootstrap support for B3LBF9 as seed ortholog is 100%.

Group of orthologs #10. Best score 1079 bits
Score difference with first non-orthologous sequence - C.neoformans:1079 P.knowlesi:1079

Q5KAK5              	100.00%		B3LBE9              	100.00%
Bootstrap support for Q5KAK5 as seed ortholog is 100%.
Bootstrap support for B3LBE9 as seed ortholog is 100%.

Group of orthologs #11. Best score 1078 bits
Score difference with first non-orthologous sequence - C.neoformans:1078 P.knowlesi:1078

Q5KBW5              	100.00%		B3L4A9              	100.00%
Bootstrap support for Q5KBW5 as seed ortholog is 100%.
Bootstrap support for B3L4A9 as seed ortholog is 100%.

Group of orthologs #12. Best score 1029 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.knowlesi:603

Q5KHJ9              	100.00%		B3L9Q6              	100.00%
Bootstrap support for Q5KHJ9 as seed ortholog is 100%.
Bootstrap support for B3L9Q6 as seed ortholog is 100%.

Group of orthologs #13. Best score 1024 bits
Score difference with first non-orthologous sequence - C.neoformans:1024 P.knowlesi:1024

Q5KGK1              	100.00%		B3LBC1              	100.00%
Bootstrap support for Q5KGK1 as seed ortholog is 100%.
Bootstrap support for B3LBC1 as seed ortholog is 100%.

Group of orthologs #14. Best score 1023 bits
Score difference with first non-orthologous sequence - C.neoformans:1023 P.knowlesi:1023

Q5KFV9              	100.00%		B3L8U1              	100.00%
Bootstrap support for Q5KFV9 as seed ortholog is 100%.
Bootstrap support for B3L8U1 as seed ortholog is 100%.

Group of orthologs #15. Best score 1016 bits
Score difference with first non-orthologous sequence - C.neoformans:572 P.knowlesi:310

Q5KA71              	100.00%		B3L7L4              	100.00%
Bootstrap support for Q5KA71 as seed ortholog is 100%.
Bootstrap support for B3L7L4 as seed ortholog is 100%.

Group of orthologs #16. Best score 1016 bits
Score difference with first non-orthologous sequence - C.neoformans:1016 P.knowlesi:1016

Q5KFC9              	100.00%		B3L960              	100.00%
Bootstrap support for Q5KFC9 as seed ortholog is 100%.
Bootstrap support for B3L960 as seed ortholog is 100%.

Group of orthologs #17. Best score 980 bits
Score difference with first non-orthologous sequence - C.neoformans:980 P.knowlesi:980

Q5KPM2              	100.00%		B3L8Q4              	100.00%
Bootstrap support for Q5KPM2 as seed ortholog is 100%.
Bootstrap support for B3L8Q4 as seed ortholog is 100%.

Group of orthologs #18. Best score 922 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.knowlesi:424

Q5KJ25              	100.00%		B3L263              	100.00%
Bootstrap support for Q5KJ25 as seed ortholog is 99%.
Bootstrap support for B3L263 as seed ortholog is 100%.

Group of orthologs #19. Best score 900 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.knowlesi:782

Q5KKM4              	100.00%		B3L1A4              	100.00%
Q5KKP4              	83.47%		
Bootstrap support for Q5KKM4 as seed ortholog is 99%.
Bootstrap support for B3L1A4 as seed ortholog is 100%.

Group of orthologs #20. Best score 878 bits
Score difference with first non-orthologous sequence - C.neoformans:878 P.knowlesi:878

Q5K9W1              	100.00%		B3L1S9              	100.00%
Bootstrap support for Q5K9W1 as seed ortholog is 100%.
Bootstrap support for B3L1S9 as seed ortholog is 100%.

Group of orthologs #21. Best score 869 bits
Score difference with first non-orthologous sequence - C.neoformans:869 P.knowlesi:869

P0CR22              	100.00%		B3LCZ1              	100.00%
Bootstrap support for P0CR22 as seed ortholog is 100%.
Bootstrap support for B3LCZ1 as seed ortholog is 100%.

Group of orthologs #22. Best score 864 bits
Score difference with first non-orthologous sequence - C.neoformans:864 P.knowlesi:864

Q5K9A5              	100.00%		B3LBA6              	100.00%
Bootstrap support for Q5K9A5 as seed ortholog is 100%.
Bootstrap support for B3LBA6 as seed ortholog is 100%.

Group of orthologs #23. Best score 820 bits
Score difference with first non-orthologous sequence - C.neoformans:820 P.knowlesi:820

P0CN26              	100.00%		B3L7A0              	100.00%
Bootstrap support for P0CN26 as seed ortholog is 100%.
Bootstrap support for B3L7A0 as seed ortholog is 100%.

Group of orthologs #24. Best score 811 bits
Score difference with first non-orthologous sequence - C.neoformans:405 P.knowlesi:410

Q5KCV6              	100.00%		B3KZL1              	100.00%
Bootstrap support for Q5KCV6 as seed ortholog is 100%.
Bootstrap support for B3KZL1 as seed ortholog is 100%.

Group of orthologs #25. Best score 800 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.knowlesi:359

Q5KGT3              	100.00%		B3L6X8              	100.00%
Bootstrap support for Q5KGT3 as seed ortholog is 99%.
Bootstrap support for B3L6X8 as seed ortholog is 100%.

Group of orthologs #26. Best score 795 bits
Score difference with first non-orthologous sequence - C.neoformans:707 P.knowlesi:795

Q5KBA0              	100.00%		B3L2B2              	100.00%
Bootstrap support for Q5KBA0 as seed ortholog is 100%.
Bootstrap support for B3L2B2 as seed ortholog is 100%.

Group of orthologs #27. Best score 783 bits
Score difference with first non-orthologous sequence - C.neoformans:783 P.knowlesi:652

Q5KMF6              	100.00%		B3L9E5              	100.00%
Bootstrap support for Q5KMF6 as seed ortholog is 100%.
Bootstrap support for B3L9E5 as seed ortholog is 100%.

Group of orthologs #28. Best score 779 bits
Score difference with first non-orthologous sequence - C.neoformans:779 P.knowlesi:779

Q5KIF6              	100.00%		B3L6H5              	100.00%
Bootstrap support for Q5KIF6 as seed ortholog is 100%.
Bootstrap support for B3L6H5 as seed ortholog is 100%.

Group of orthologs #29. Best score 758 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.knowlesi:632

Q5K6Z6              	100.00%		B3L2J7              	100.00%
Bootstrap support for Q5K6Z6 as seed ortholog is 99%.
Bootstrap support for B3L2J7 as seed ortholog is 100%.

Group of orthologs #30. Best score 746 bits
Score difference with first non-orthologous sequence - C.neoformans:746 P.knowlesi:746

Q5KMH0              	100.00%		B3L184              	100.00%
Bootstrap support for Q5KMH0 as seed ortholog is 100%.
Bootstrap support for B3L184 as seed ortholog is 100%.

Group of orthologs #31. Best score 743 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.knowlesi:639

Q5K8W5              	100.00%		B3L5E9              	100.00%
Bootstrap support for Q5K8W5 as seed ortholog is 100%.
Bootstrap support for B3L5E9 as seed ortholog is 100%.

Group of orthologs #32. Best score 741 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.knowlesi:291

Q5KEX1              	100.00%		B3L2J4              	100.00%
Bootstrap support for Q5KEX1 as seed ortholog is 99%.
Bootstrap support for B3L2J4 as seed ortholog is 100%.

Group of orthologs #33. Best score 734 bits
Score difference with first non-orthologous sequence - C.neoformans:667 P.knowlesi:734

P0CR38              	100.00%		B3L165              	100.00%
Bootstrap support for P0CR38 as seed ortholog is 100%.
Bootstrap support for B3L165 as seed ortholog is 100%.

Group of orthologs #34. Best score 732 bits
Score difference with first non-orthologous sequence - C.neoformans:732 P.knowlesi:732

Q5KHW3              	100.00%		B3L842              	100.00%
Bootstrap support for Q5KHW3 as seed ortholog is 100%.
Bootstrap support for B3L842 as seed ortholog is 100%.

Group of orthologs #35. Best score 728 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.knowlesi:522

Q5KKE7              	100.00%		B3L3M0              	100.00%
Bootstrap support for Q5KKE7 as seed ortholog is 100%.
Bootstrap support for B3L3M0 as seed ortholog is 100%.

Group of orthologs #36. Best score 718 bits
Score difference with first non-orthologous sequence - C.neoformans:718 P.knowlesi:718

Q5KN88              	100.00%		B3L6T7              	100.00%
Bootstrap support for Q5KN88 as seed ortholog is 100%.
Bootstrap support for B3L6T7 as seed ortholog is 100%.

Group of orthologs #37. Best score 709 bits
Score difference with first non-orthologous sequence - C.neoformans:709 P.knowlesi:709

Q5KA29              	100.00%		B3LCI5              	100.00%
Bootstrap support for Q5KA29 as seed ortholog is 100%.
Bootstrap support for B3LCI5 as seed ortholog is 100%.

Group of orthologs #38. Best score 705 bits
Score difference with first non-orthologous sequence - C.neoformans:705 P.knowlesi:705

Q5KGV5              	100.00%		B3LBT4              	100.00%
Bootstrap support for Q5KGV5 as seed ortholog is 100%.
Bootstrap support for B3LBT4 as seed ortholog is 100%.

Group of orthologs #39. Best score 701 bits
Score difference with first non-orthologous sequence - C.neoformans:343 P.knowlesi:505

Q5KM62              	100.00%		B3L347              	100.00%
                    	       		B3L1P1              	85.59%
Bootstrap support for Q5KM62 as seed ortholog is 100%.
Bootstrap support for B3L347 as seed ortholog is 100%.

Group of orthologs #40. Best score 698 bits
Score difference with first non-orthologous sequence - C.neoformans:698 P.knowlesi:698

Q5KEH7              	100.00%		B3L7Y9              	100.00%
Bootstrap support for Q5KEH7 as seed ortholog is 100%.
Bootstrap support for B3L7Y9 as seed ortholog is 100%.

Group of orthologs #41. Best score 691 bits
Score difference with first non-orthologous sequence - C.neoformans:691 P.knowlesi:691

Q5KBW0              	100.00%		B3KZZ1              	100.00%
Bootstrap support for Q5KBW0 as seed ortholog is 100%.
Bootstrap support for B3KZZ1 as seed ortholog is 100%.

Group of orthologs #42. Best score 668 bits
Score difference with first non-orthologous sequence - C.neoformans:668 P.knowlesi:668

Q5KF97              	100.00%		B3L6U2              	100.00%
Bootstrap support for Q5KF97 as seed ortholog is 100%.
Bootstrap support for B3L6U2 as seed ortholog is 100%.

Group of orthologs #43. Best score 668 bits
Score difference with first non-orthologous sequence - C.neoformans:668 P.knowlesi:668

Q5KMN3              	100.00%		B3L7Y7              	100.00%
Bootstrap support for Q5KMN3 as seed ortholog is 100%.
Bootstrap support for B3L7Y7 as seed ortholog is 100%.

Group of orthologs #44. Best score 665 bits
Score difference with first non-orthologous sequence - C.neoformans:665 P.knowlesi:665

Q5KFU0              	100.00%		B3LD12              	100.00%
Bootstrap support for Q5KFU0 as seed ortholog is 100%.
Bootstrap support for B3LD12 as seed ortholog is 100%.

Group of orthologs #45. Best score 653 bits
Score difference with first non-orthologous sequence - C.neoformans:10 P.knowlesi:164

Q5KDZ1              	100.00%		B3L1E0              	100.00%
Bootstrap support for Q5KDZ1 as seed ortholog is 59%.
Alternative seed ortholog is Q5KPH0 (10 bits away from this cluster)
Bootstrap support for B3L1E0 as seed ortholog is 99%.

Group of orthologs #46. Best score 647 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.knowlesi:37

Q5KP06              	100.00%		B3LDA3              	100.00%
Bootstrap support for Q5KP06 as seed ortholog is 100%.
Bootstrap support for B3LDA3 as seed ortholog is 93%.

Group of orthologs #47. Best score 644 bits
Score difference with first non-orthologous sequence - C.neoformans:644 P.knowlesi:425

Q5KCR8              	100.00%		B3L4J4              	100.00%
Bootstrap support for Q5KCR8 as seed ortholog is 100%.
Bootstrap support for B3L4J4 as seed ortholog is 100%.

Group of orthologs #48. Best score 644 bits
Score difference with first non-orthologous sequence - C.neoformans:644 P.knowlesi:644

Q5KDF5              	100.00%		B3LC00              	100.00%
Bootstrap support for Q5KDF5 as seed ortholog is 100%.
Bootstrap support for B3LC00 as seed ortholog is 100%.

Group of orthologs #49. Best score 640 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.knowlesi:350

Q5K906              	100.00%		B3L5Y2              	100.00%
Q5KDA3              	100.00%		
Bootstrap support for Q5K906 as seed ortholog is 89%.
Bootstrap support for Q5KDA3 as seed ortholog is 88%.
Bootstrap support for B3L5Y2 as seed ortholog is 100%.

Group of orthologs #50. Best score 634 bits
Score difference with first non-orthologous sequence - C.neoformans:572 P.knowlesi:634

P0CN30              	100.00%		B3L753              	100.00%
Bootstrap support for P0CN30 as seed ortholog is 100%.
Bootstrap support for B3L753 as seed ortholog is 100%.

Group of orthologs #51. Best score 634 bits
Score difference with first non-orthologous sequence - C.neoformans:634 P.knowlesi:634

Q5KN48              	100.00%		B3L7C9              	100.00%
Bootstrap support for Q5KN48 as seed ortholog is 100%.
Bootstrap support for B3L7C9 as seed ortholog is 100%.

Group of orthologs #52. Best score 631 bits
Score difference with first non-orthologous sequence - C.neoformans:523 P.knowlesi:278

Q5KD67              	100.00%		B3LCM2              	100.00%
Bootstrap support for Q5KD67 as seed ortholog is 100%.
Bootstrap support for B3LCM2 as seed ortholog is 99%.

Group of orthologs #53. Best score 621 bits
Score difference with first non-orthologous sequence - C.neoformans:477 P.knowlesi:621

Q5KGN2              	100.00%		B3L3L7              	100.00%
Bootstrap support for Q5KGN2 as seed ortholog is 100%.
Bootstrap support for B3L3L7 as seed ortholog is 100%.

Group of orthologs #54. Best score 620 bits
Score difference with first non-orthologous sequence - C.neoformans:620 P.knowlesi:620

Q5KL42              	100.00%		B3L5D0              	100.00%
Bootstrap support for Q5KL42 as seed ortholog is 100%.
Bootstrap support for B3L5D0 as seed ortholog is 100%.

Group of orthologs #55. Best score 604 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.knowlesi:604

Q5KJ21              	100.00%		B3L7U8              	100.00%
Bootstrap support for Q5KJ21 as seed ortholog is 99%.
Bootstrap support for B3L7U8 as seed ortholog is 100%.

Group of orthologs #56. Best score 604 bits
Score difference with first non-orthologous sequence - C.neoformans:604 P.knowlesi:604

Q5KQ47              	100.00%		B3L402              	100.00%
Bootstrap support for Q5KQ47 as seed ortholog is 100%.
Bootstrap support for B3L402 as seed ortholog is 100%.

Group of orthologs #57. Best score 602 bits
Score difference with first non-orthologous sequence - C.neoformans:602 P.knowlesi:602

Q5KB69              	100.00%		B3L8H1              	100.00%
Bootstrap support for Q5KB69 as seed ortholog is 100%.
Bootstrap support for B3L8H1 as seed ortholog is 100%.

Group of orthologs #58. Best score 596 bits
Score difference with first non-orthologous sequence - C.neoformans:596 P.knowlesi:103

Q5KP96              	100.00%		B3LCI6              	100.00%
Q5KI71              	5.01%		
Bootstrap support for Q5KP96 as seed ortholog is 100%.
Bootstrap support for B3LCI6 as seed ortholog is 59%.
Alternative seed ortholog is B3L419 (103 bits away from this cluster)

Group of orthologs #59. Best score 594 bits
Score difference with first non-orthologous sequence - C.neoformans:594 P.knowlesi:594

Q5KFB9              	100.00%		B3L0I2              	100.00%
Bootstrap support for Q5KFB9 as seed ortholog is 100%.
Bootstrap support for B3L0I2 as seed ortholog is 100%.

Group of orthologs #60. Best score 589 bits
Score difference with first non-orthologous sequence - C.neoformans:589 P.knowlesi:589

Q5KMU3              	100.00%		B3L565              	100.00%
Bootstrap support for Q5KMU3 as seed ortholog is 100%.
Bootstrap support for B3L565 as seed ortholog is 100%.

Group of orthologs #61. Best score 588 bits
Score difference with first non-orthologous sequence - C.neoformans:588 P.knowlesi:588

Q5KBF6              	100.00%		B3L3B1              	100.00%
Bootstrap support for Q5KBF6 as seed ortholog is 100%.
Bootstrap support for B3L3B1 as seed ortholog is 100%.

Group of orthologs #62. Best score 587 bits
Score difference with first non-orthologous sequence - C.neoformans:587 P.knowlesi:229

Q5KLW7              	100.00%		B3L3U9              	100.00%
Bootstrap support for Q5KLW7 as seed ortholog is 100%.
Bootstrap support for B3L3U9 as seed ortholog is 100%.

Group of orthologs #63. Best score 585 bits
Score difference with first non-orthologous sequence - C.neoformans:585 P.knowlesi:585

Q5KAX5              	100.00%		B3L0U2              	100.00%
Bootstrap support for Q5KAX5 as seed ortholog is 100%.
Bootstrap support for B3L0U2 as seed ortholog is 100%.

Group of orthologs #64. Best score 584 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.knowlesi:314

P0CO18              	100.00%		B3L193              	100.00%
Bootstrap support for P0CO18 as seed ortholog is 99%.
Bootstrap support for B3L193 as seed ortholog is 100%.

Group of orthologs #65. Best score 578 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.knowlesi:362

Q5KE58              	100.00%		B3L5Y4              	100.00%
Bootstrap support for Q5KE58 as seed ortholog is 100%.
Bootstrap support for B3L5Y4 as seed ortholog is 100%.

Group of orthologs #66. Best score 574 bits
Score difference with first non-orthologous sequence - C.neoformans:434 P.knowlesi:574

Q5KAP2              	100.00%		B3LDD0              	100.00%
Bootstrap support for Q5KAP2 as seed ortholog is 100%.
Bootstrap support for B3LDD0 as seed ortholog is 100%.

Group of orthologs #67. Best score 574 bits
Score difference with first non-orthologous sequence - C.neoformans:574 P.knowlesi:574

Q5KP40              	100.00%		B3L4C8              	100.00%
Bootstrap support for Q5KP40 as seed ortholog is 100%.
Bootstrap support for B3L4C8 as seed ortholog is 100%.

Group of orthologs #68. Best score 574 bits
Score difference with first non-orthologous sequence - C.neoformans:574 P.knowlesi:287

Q5KPX3              	100.00%		B3LCP8              	100.00%
Bootstrap support for Q5KPX3 as seed ortholog is 100%.
Bootstrap support for B3LCP8 as seed ortholog is 100%.

Group of orthologs #69. Best score 572 bits
Score difference with first non-orthologous sequence - C.neoformans:572 P.knowlesi:572

Q5KJT2              	100.00%		B3L4J0              	100.00%
Bootstrap support for Q5KJT2 as seed ortholog is 100%.
Bootstrap support for B3L4J0 as seed ortholog is 100%.

Group of orthologs #70. Best score 572 bits
Score difference with first non-orthologous sequence - C.neoformans:572 P.knowlesi:572

Q5KLE4              	100.00%		B3L369              	100.00%
Bootstrap support for Q5KLE4 as seed ortholog is 100%.
Bootstrap support for B3L369 as seed ortholog is 100%.

Group of orthologs #71. Best score 570 bits
Score difference with first non-orthologous sequence - C.neoformans:570 P.knowlesi:377

Q5KNR6              	100.00%		B3L315              	100.00%
Bootstrap support for Q5KNR6 as seed ortholog is 100%.
Bootstrap support for B3L315 as seed ortholog is 100%.

Group of orthologs #72. Best score 569 bits
Score difference with first non-orthologous sequence - C.neoformans:569 P.knowlesi:569

Q5KC69              	100.00%		B3L8D7              	100.00%
Bootstrap support for Q5KC69 as seed ortholog is 100%.
Bootstrap support for B3L8D7 as seed ortholog is 100%.

Group of orthologs #73. Best score 568 bits
Score difference with first non-orthologous sequence - C.neoformans:568 P.knowlesi:568

Q5KH77              	100.00%		B3L6H8              	100.00%
Bootstrap support for Q5KH77 as seed ortholog is 100%.
Bootstrap support for B3L6H8 as seed ortholog is 100%.

Group of orthologs #74. Best score 566 bits
Score difference with first non-orthologous sequence - C.neoformans:432 P.knowlesi:566

Q5KDL3              	100.00%		B3LBS7              	100.00%
Bootstrap support for Q5KDL3 as seed ortholog is 100%.
Bootstrap support for B3LBS7 as seed ortholog is 100%.

Group of orthologs #75. Best score 563 bits
Score difference with first non-orthologous sequence - C.neoformans:563 P.knowlesi:476

Q5KPI3              	100.00%		B3L4B5              	100.00%
Bootstrap support for Q5KPI3 as seed ortholog is 100%.
Bootstrap support for B3L4B5 as seed ortholog is 100%.

Group of orthologs #76. Best score 556 bits
Score difference with first non-orthologous sequence - C.neoformans:556 P.knowlesi:556

Q5KIW8              	100.00%		B3LAR0              	100.00%
Bootstrap support for Q5KIW8 as seed ortholog is 100%.
Bootstrap support for B3LAR0 as seed ortholog is 100%.

Group of orthologs #77. Best score 555 bits
Score difference with first non-orthologous sequence - C.neoformans:555 P.knowlesi:493

Q5KE94              	100.00%		B3L746              	100.00%
Bootstrap support for Q5KE94 as seed ortholog is 100%.
Bootstrap support for B3L746 as seed ortholog is 100%.

Group of orthologs #78. Best score 554 bits
Score difference with first non-orthologous sequence - C.neoformans:370 P.knowlesi:362

P0CQ80              	100.00%		B3L3Z3              	100.00%
Bootstrap support for P0CQ80 as seed ortholog is 100%.
Bootstrap support for B3L3Z3 as seed ortholog is 100%.

Group of orthologs #79. Best score 552 bits
Score difference with first non-orthologous sequence - C.neoformans:416 P.knowlesi:221

P0CN32              	100.00%		B3LCX4              	100.00%
Bootstrap support for P0CN32 as seed ortholog is 100%.
Bootstrap support for B3LCX4 as seed ortholog is 99%.

Group of orthologs #80. Best score 548 bits
Score difference with first non-orthologous sequence - C.neoformans:548 P.knowlesi:548

P0CR28              	100.00%		B3L6Z9              	100.00%
Bootstrap support for P0CR28 as seed ortholog is 100%.
Bootstrap support for B3L6Z9 as seed ortholog is 100%.

Group of orthologs #81. Best score 548 bits
Score difference with first non-orthologous sequence - C.neoformans:548 P.knowlesi:548

Q5K9H1              	100.00%		B3LCT4              	100.00%
Bootstrap support for Q5K9H1 as seed ortholog is 100%.
Bootstrap support for B3LCT4 as seed ortholog is 100%.

Group of orthologs #82. Best score 547 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.knowlesi:278

Q5KME1              	100.00%		B3LAL6              	100.00%
Bootstrap support for Q5KME1 as seed ortholog is 100%.
Bootstrap support for B3LAL6 as seed ortholog is 100%.

Group of orthologs #83. Best score 538 bits
Score difference with first non-orthologous sequence - C.neoformans:393 P.knowlesi:538

Q5KA27              	100.00%		B3LBM5              	100.00%
Bootstrap support for Q5KA27 as seed ortholog is 100%.
Bootstrap support for B3LBM5 as seed ortholog is 100%.

Group of orthologs #84. Best score 537 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.knowlesi:353

P0CQ70              	100.00%		B3L971              	100.00%
Bootstrap support for P0CQ70 as seed ortholog is 100%.
Bootstrap support for B3L971 as seed ortholog is 100%.

Group of orthologs #85. Best score 537 bits
Score difference with first non-orthologous sequence - C.neoformans:537 P.knowlesi:537

Q5KLD7              	100.00%		B3LCD4              	100.00%
Bootstrap support for Q5KLD7 as seed ortholog is 100%.
Bootstrap support for B3LCD4 as seed ortholog is 100%.

Group of orthologs #86. Best score 535 bits
Score difference with first non-orthologous sequence - C.neoformans:535 P.knowlesi:535

Q5K9G4              	100.00%		B3L0J2              	100.00%
Bootstrap support for Q5K9G4 as seed ortholog is 100%.
Bootstrap support for B3L0J2 as seed ortholog is 100%.

Group of orthologs #87. Best score 533 bits
Score difference with first non-orthologous sequence - C.neoformans:533 P.knowlesi:533

Q5KEU7              	100.00%		B3L4H0              	100.00%
Bootstrap support for Q5KEU7 as seed ortholog is 100%.
Bootstrap support for B3L4H0 as seed ortholog is 100%.

Group of orthologs #88. Best score 532 bits
Score difference with first non-orthologous sequence - C.neoformans:383 P.knowlesi:532

Q5K7R3              	100.00%		B3L5B0              	100.00%
Bootstrap support for Q5K7R3 as seed ortholog is 100%.
Bootstrap support for B3L5B0 as seed ortholog is 100%.

Group of orthologs #89. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:530 P.knowlesi:530

Q5KNM9              	100.00%		B3L2D7              	100.00%
Bootstrap support for Q5KNM9 as seed ortholog is 100%.
Bootstrap support for B3L2D7 as seed ortholog is 100%.

Group of orthologs #90. Best score 526 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.knowlesi:84

Q5K7R6              	100.00%		B3LCL1              	100.00%
Bootstrap support for Q5K7R6 as seed ortholog is 99%.
Bootstrap support for B3LCL1 as seed ortholog is 93%.

Group of orthologs #91. Best score 526 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.knowlesi:526

Q5KLV5              	100.00%		B3L1F4              	100.00%
Bootstrap support for Q5KLV5 as seed ortholog is 100%.
Bootstrap support for B3L1F4 as seed ortholog is 100%.

Group of orthologs #92. Best score 526 bits
Score difference with first non-orthologous sequence - C.neoformans:526 P.knowlesi:526

Q5KPQ9              	100.00%		B3L9L0              	100.00%
Bootstrap support for Q5KPQ9 as seed ortholog is 100%.
Bootstrap support for B3L9L0 as seed ortholog is 100%.

Group of orthologs #93. Best score 525 bits
Score difference with first non-orthologous sequence - C.neoformans:525 P.knowlesi:163

Q5KLI4              	100.00%		B3L4Z9              	100.00%
Bootstrap support for Q5KLI4 as seed ortholog is 100%.
Bootstrap support for B3L4Z9 as seed ortholog is 99%.

Group of orthologs #94. Best score 524 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.knowlesi:348

P0CQ72              	100.00%		B3L1P5              	100.00%
Bootstrap support for P0CQ72 as seed ortholog is 100%.
Bootstrap support for B3L1P5 as seed ortholog is 100%.

Group of orthologs #95. Best score 524 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.knowlesi:357

Q5K9Z4              	100.00%		B3KZB0              	100.00%
Bootstrap support for Q5K9Z4 as seed ortholog is 100%.
Bootstrap support for B3KZB0 as seed ortholog is 100%.

Group of orthologs #96. Best score 522 bits
Score difference with first non-orthologous sequence - C.neoformans:522 P.knowlesi:522

Q5KE57              	100.00%		B3L4H1              	100.00%
Bootstrap support for Q5KE57 as seed ortholog is 100%.
Bootstrap support for B3L4H1 as seed ortholog is 100%.

Group of orthologs #97. Best score 521 bits
Score difference with first non-orthologous sequence - C.neoformans:521 P.knowlesi:521

Q5KJR9              	100.00%		B3L0N2              	100.00%
Bootstrap support for Q5KJR9 as seed ortholog is 100%.
Bootstrap support for B3L0N2 as seed ortholog is 100%.

Group of orthologs #98. Best score 519 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.knowlesi:519

Q5KLA7              	100.00%		B3L3V4              	100.00%
Bootstrap support for Q5KLA7 as seed ortholog is 99%.
Bootstrap support for B3L3V4 as seed ortholog is 100%.

Group of orthologs #99. Best score 519 bits
Score difference with first non-orthologous sequence - C.neoformans:519 P.knowlesi:519

Q5KIH6              	100.00%		B3LAJ1              	100.00%
Bootstrap support for Q5KIH6 as seed ortholog is 100%.
Bootstrap support for B3LAJ1 as seed ortholog is 100%.

Group of orthologs #100. Best score 514 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.knowlesi:514

Q5KB11              	100.00%		B3LBK2              	100.00%
Bootstrap support for Q5KB11 as seed ortholog is 99%.
Bootstrap support for B3LBK2 as seed ortholog is 100%.

Group of orthologs #101. Best score 511 bits
Score difference with first non-orthologous sequence - C.neoformans:511 P.knowlesi:511

Q5KLT9              	100.00%		B3L8E1              	100.00%
Bootstrap support for Q5KLT9 as seed ortholog is 100%.
Bootstrap support for B3L8E1 as seed ortholog is 100%.

Group of orthologs #102. Best score 507 bits
Score difference with first non-orthologous sequence - C.neoformans:406 P.knowlesi:507

Q5KBB1              	100.00%		B3L892              	100.00%
Bootstrap support for Q5KBB1 as seed ortholog is 100%.
Bootstrap support for B3L892 as seed ortholog is 100%.

Group of orthologs #103. Best score 504 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.knowlesi:125

P0CQ76              	100.00%		B3L9V8              	100.00%
Bootstrap support for P0CQ76 as seed ortholog is 100%.
Bootstrap support for B3L9V8 as seed ortholog is 99%.

Group of orthologs #104. Best score 504 bits
Score difference with first non-orthologous sequence - C.neoformans:504 P.knowlesi:504

Q5K7P1              	100.00%		B3L997              	100.00%
Bootstrap support for Q5K7P1 as seed ortholog is 100%.
Bootstrap support for B3L997 as seed ortholog is 100%.

Group of orthologs #105. Best score 503 bits
Score difference with first non-orthologous sequence - C.neoformans:503 P.knowlesi:503

Q5KCG5              	100.00%		B3L4A4              	100.00%
Bootstrap support for Q5KCG5 as seed ortholog is 100%.
Bootstrap support for B3L4A4 as seed ortholog is 100%.

Group of orthologs #106. Best score 502 bits
Score difference with first non-orthologous sequence - C.neoformans:502 P.knowlesi:502

Q5KN49              	100.00%		B3L633              	100.00%
Bootstrap support for Q5KN49 as seed ortholog is 100%.
Bootstrap support for B3L633 as seed ortholog is 100%.

Group of orthologs #107. Best score 500 bits
Score difference with first non-orthologous sequence - C.neoformans:352 P.knowlesi:326

P0CQ96              	100.00%		B3L0Q5              	100.00%
Bootstrap support for P0CQ96 as seed ortholog is 100%.
Bootstrap support for B3L0Q5 as seed ortholog is 100%.

Group of orthologs #108. Best score 494 bits
Score difference with first non-orthologous sequence - C.neoformans:494 P.knowlesi:494

Q5KBI1              	100.00%		B3L7W9              	100.00%
Bootstrap support for Q5KBI1 as seed ortholog is 100%.
Bootstrap support for B3L7W9 as seed ortholog is 100%.

Group of orthologs #109. Best score 492 bits
Score difference with first non-orthologous sequence - C.neoformans:492 P.knowlesi:492

Q5KE01              	100.00%		B3L2P2              	100.00%
Bootstrap support for Q5KE01 as seed ortholog is 100%.
Bootstrap support for B3L2P2 as seed ortholog is 100%.

Group of orthologs #110. Best score 488 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.knowlesi:268

P0CQ84              	100.00%		B3L794              	100.00%
Bootstrap support for P0CQ84 as seed ortholog is 100%.
Bootstrap support for B3L794 as seed ortholog is 100%.

Group of orthologs #111. Best score 487 bits
Score difference with first non-orthologous sequence - C.neoformans:487 P.knowlesi:487

Q5K754              	100.00%		B3L1W5              	100.00%
Bootstrap support for Q5K754 as seed ortholog is 100%.
Bootstrap support for B3L1W5 as seed ortholog is 100%.

Group of orthologs #112. Best score 487 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.knowlesi:273

Q5KDW0              	100.00%		B3LBS6              	100.00%
Bootstrap support for Q5KDW0 as seed ortholog is 99%.
Bootstrap support for B3LBS6 as seed ortholog is 100%.

Group of orthologs #113. Best score 485 bits
Score difference with first non-orthologous sequence - C.neoformans:485 P.knowlesi:485

Q5KBP7              	100.00%		B3L4W9              	100.00%
Bootstrap support for Q5KBP7 as seed ortholog is 100%.
Bootstrap support for B3L4W9 as seed ortholog is 100%.

Group of orthologs #114. Best score 482 bits
Score difference with first non-orthologous sequence - C.neoformans:482 P.knowlesi:302

P0CQ88              	100.00%		B3L682              	100.00%
Bootstrap support for P0CQ88 as seed ortholog is 100%.
Bootstrap support for B3L682 as seed ortholog is 100%.

Group of orthologs #115. Best score 481 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.knowlesi:481

Q5KFJ3              	100.00%		B3KZ01              	100.00%
Bootstrap support for Q5KFJ3 as seed ortholog is 99%.
Bootstrap support for B3KZ01 as seed ortholog is 100%.

Group of orthologs #116. Best score 481 bits
Score difference with first non-orthologous sequence - C.neoformans:481 P.knowlesi:481

Q5KFS5              	100.00%		B3LAH4              	100.00%
Bootstrap support for Q5KFS5 as seed ortholog is 100%.
Bootstrap support for B3LAH4 as seed ortholog is 100%.

Group of orthologs #117. Best score 481 bits
Score difference with first non-orthologous sequence - C.neoformans:481 P.knowlesi:86

Q5KKS9              	100.00%		B3L9B1              	100.00%
Bootstrap support for Q5KKS9 as seed ortholog is 100%.
Bootstrap support for B3L9B1 as seed ortholog is 97%.

Group of orthologs #118. Best score 477 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.knowlesi:477

Q5KLP9              	100.00%		B3L776              	100.00%
Bootstrap support for Q5KLP9 as seed ortholog is 99%.
Bootstrap support for B3L776 as seed ortholog is 100%.

Group of orthologs #119. Best score 475 bits
Score difference with first non-orthologous sequence - C.neoformans:475 P.knowlesi:475

Q5KEV8              	100.00%		B3L5F6              	100.00%
Bootstrap support for Q5KEV8 as seed ortholog is 100%.
Bootstrap support for B3L5F6 as seed ortholog is 100%.

Group of orthologs #120. Best score 474 bits
Score difference with first non-orthologous sequence - C.neoformans:474 P.knowlesi:474

Q5K9E3              	100.00%		B3L240              	100.00%
Bootstrap support for Q5K9E3 as seed ortholog is 100%.
Bootstrap support for B3L240 as seed ortholog is 100%.

Group of orthologs #121. Best score 472 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.knowlesi:472

Q5KF65              	100.00%		B3L2S3              	100.00%
Q5KD72              	6.20%		
Bootstrap support for Q5KF65 as seed ortholog is 85%.
Bootstrap support for B3L2S3 as seed ortholog is 100%.

Group of orthologs #122. Best score 463 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.knowlesi:463

P0CM96              	100.00%		B3LD39              	100.00%
Bootstrap support for P0CM96 as seed ortholog is 100%.
Bootstrap support for B3LD39 as seed ortholog is 100%.

Group of orthologs #123. Best score 461 bits
Score difference with first non-orthologous sequence - C.neoformans:461 P.knowlesi:461

Q5KLA1              	100.00%		B3LAR4              	100.00%
Bootstrap support for Q5KLA1 as seed ortholog is 100%.
Bootstrap support for B3LAR4 as seed ortholog is 100%.

Group of orthologs #124. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.knowlesi:292

Q5KII1              	100.00%		B3KZB3              	100.00%
Bootstrap support for Q5KII1 as seed ortholog is 99%.
Bootstrap support for B3KZB3 as seed ortholog is 100%.

Group of orthologs #125. Best score 459 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.knowlesi:282

Q5KHC6              	100.00%		B3LDF3              	100.00%
Bootstrap support for Q5KHC6 as seed ortholog is 99%.
Bootstrap support for B3LDF3 as seed ortholog is 100%.

Group of orthologs #126. Best score 458 bits
Score difference with first non-orthologous sequence - C.neoformans:458 P.knowlesi:458

Q5K7U0              	100.00%		B3L7I1              	100.00%
Bootstrap support for Q5K7U0 as seed ortholog is 100%.
Bootstrap support for B3L7I1 as seed ortholog is 100%.

Group of orthologs #127. Best score 456 bits
Score difference with first non-orthologous sequence - C.neoformans:456 P.knowlesi:456

Q5KFZ4              	100.00%		B3L8A1              	100.00%
Bootstrap support for Q5KFZ4 as seed ortholog is 100%.
Bootstrap support for B3L8A1 as seed ortholog is 100%.

Group of orthologs #128. Best score 455 bits
Score difference with first non-orthologous sequence - C.neoformans:455 P.knowlesi:455

Q5K9E9              	100.00%		B3L3R6              	100.00%
Bootstrap support for Q5K9E9 as seed ortholog is 100%.
Bootstrap support for B3L3R6 as seed ortholog is 100%.

Group of orthologs #129. Best score 455 bits
Score difference with first non-orthologous sequence - C.neoformans:455 P.knowlesi:455

Q5KP44              	100.00%		B3L2M5              	100.00%
Bootstrap support for Q5KP44 as seed ortholog is 100%.
Bootstrap support for B3L2M5 as seed ortholog is 100%.

Group of orthologs #130. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.knowlesi:454

Q5KN74              	100.00%		B3LAB7              	100.00%
                    	       		B3KZ15              	18.19%
Bootstrap support for Q5KN74 as seed ortholog is 100%.
Bootstrap support for B3LAB7 as seed ortholog is 100%.

Group of orthologs #131. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:454 P.knowlesi:454

P0CO10              	100.00%		B3KZW6              	100.00%
Bootstrap support for P0CO10 as seed ortholog is 100%.
Bootstrap support for B3KZW6 as seed ortholog is 100%.

Group of orthologs #132. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.knowlesi:344

Q5KF69              	100.00%		B3L4N6              	100.00%
Bootstrap support for Q5KF69 as seed ortholog is 100%.
Bootstrap support for B3L4N6 as seed ortholog is 100%.

Group of orthologs #133. Best score 453 bits
Score difference with first non-orthologous sequence - C.neoformans:453 P.knowlesi:191

P0CL88              	100.00%		B3L3A6              	100.00%
Bootstrap support for P0CL88 as seed ortholog is 100%.
Bootstrap support for B3L3A6 as seed ortholog is 91%.

Group of orthologs #134. Best score 452 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.knowlesi:452

Q5KAC2              	100.00%		B3KZB9              	100.00%
Bootstrap support for Q5KAC2 as seed ortholog is 100%.
Bootstrap support for B3KZB9 as seed ortholog is 100%.

Group of orthologs #135. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:199 P.knowlesi:188

Q5K7N5              	100.00%		B3LBY6              	100.00%
Bootstrap support for Q5K7N5 as seed ortholog is 99%.
Bootstrap support for B3LBY6 as seed ortholog is 99%.

Group of orthologs #136. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:390

Q5KI40              	100.00%		B3L5H4              	100.00%
Bootstrap support for Q5KI40 as seed ortholog is 99%.
Bootstrap support for B3L5H4 as seed ortholog is 100%.

Group of orthologs #137. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.knowlesi:451

Q5KP62              	100.00%		B3L2N9              	100.00%
Bootstrap support for Q5KP62 as seed ortholog is 100%.
Bootstrap support for B3L2N9 as seed ortholog is 100%.

Group of orthologs #138. Best score 449 bits
Score difference with first non-orthologous sequence - C.neoformans:449 P.knowlesi:449

Q5KJ92              	100.00%		B3KZC7              	100.00%
Bootstrap support for Q5KJ92 as seed ortholog is 100%.
Bootstrap support for B3KZC7 as seed ortholog is 100%.

Group of orthologs #139. Best score 448 bits
Score difference with first non-orthologous sequence - C.neoformans:448 P.knowlesi:384

Q5KKJ5              	100.00%		B3L619              	100.00%
Bootstrap support for Q5KKJ5 as seed ortholog is 100%.
Bootstrap support for B3L619 as seed ortholog is 100%.

Group of orthologs #140. Best score 446 bits
Score difference with first non-orthologous sequence - C.neoformans:446 P.knowlesi:108

Q5KKV8              	100.00%		B3L2D6              	100.00%
Q5KNS5              	5.75%		
Bootstrap support for Q5KKV8 as seed ortholog is 100%.
Bootstrap support for B3L2D6 as seed ortholog is 97%.

Group of orthologs #141. Best score 446 bits
Score difference with first non-orthologous sequence - C.neoformans:446 P.knowlesi:446

Q5KJ87              	100.00%		B3L654              	100.00%
Bootstrap support for Q5KJ87 as seed ortholog is 100%.
Bootstrap support for B3L654 as seed ortholog is 100%.

Group of orthologs #142. Best score 445 bits
Score difference with first non-orthologous sequence - C.neoformans:369 P.knowlesi:362

Q5KDQ7              	100.00%		B3L8S5              	100.00%
Bootstrap support for Q5KDQ7 as seed ortholog is 100%.
Bootstrap support for B3L8S5 as seed ortholog is 100%.

Group of orthologs #143. Best score 442 bits
Score difference with first non-orthologous sequence - C.neoformans:442 P.knowlesi:442

Q5KKQ6              	100.00%		B3KZK7              	100.00%
Bootstrap support for Q5KKQ6 as seed ortholog is 100%.
Bootstrap support for B3KZK7 as seed ortholog is 100%.

Group of orthologs #144. Best score 442 bits
Score difference with first non-orthologous sequence - C.neoformans:442 P.knowlesi:442

Q5KHZ4              	100.00%		B3LC85              	100.00%
Bootstrap support for Q5KHZ4 as seed ortholog is 100%.
Bootstrap support for B3LC85 as seed ortholog is 100%.

Group of orthologs #145. Best score 441 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.knowlesi:441

Q5K9A8              	100.00%		B3L6L5              	100.00%
Bootstrap support for Q5K9A8 as seed ortholog is 95%.
Bootstrap support for B3L6L5 as seed ortholog is 100%.

Group of orthologs #146. Best score 441 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.knowlesi:11

Q5KPW4              	100.00%		B3KZN7              	100.00%
Bootstrap support for Q5KPW4 as seed ortholog is 99%.
Bootstrap support for B3KZN7 as seed ortholog is 63%.
Alternative seed ortholog is B3LAP0 (11 bits away from this cluster)

Group of orthologs #147. Best score 435 bits
Score difference with first non-orthologous sequence - C.neoformans:435 P.knowlesi:435

P0CQ22              	100.00%		B3L694              	100.00%
Bootstrap support for P0CQ22 as seed ortholog is 100%.
Bootstrap support for B3L694 as seed ortholog is 100%.

Group of orthologs #148. Best score 434 bits
Score difference with first non-orthologous sequence - C.neoformans:434 P.knowlesi:434

P0CR26              	100.00%		B3L4L2              	100.00%
Bootstrap support for P0CR26 as seed ortholog is 100%.
Bootstrap support for B3L4L2 as seed ortholog is 100%.

Group of orthologs #149. Best score 430 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.knowlesi:259

P0CQ98              	100.00%		B3L6I2              	100.00%
Bootstrap support for P0CQ98 as seed ortholog is 99%.
Bootstrap support for B3L6I2 as seed ortholog is 100%.

Group of orthologs #150. Best score 429 bits
Score difference with first non-orthologous sequence - C.neoformans:429 P.knowlesi:429

Q5KKB8              	100.00%		B3L8T7              	100.00%
Bootstrap support for Q5KKB8 as seed ortholog is 100%.
Bootstrap support for B3L8T7 as seed ortholog is 100%.

Group of orthologs #151. Best score 427 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.knowlesi:253

Q5KJI1              	100.00%		B3L8U0              	100.00%
Bootstrap support for Q5KJI1 as seed ortholog is 78%.
Bootstrap support for B3L8U0 as seed ortholog is 99%.

Group of orthologs #152. Best score 424 bits
Score difference with first non-orthologous sequence - C.neoformans:424 P.knowlesi:424

Q5K6X3              	100.00%		B3L7S4              	100.00%
Bootstrap support for Q5K6X3 as seed ortholog is 100%.
Bootstrap support for B3L7S4 as seed ortholog is 100%.

Group of orthologs #153. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:423

P0CN74              	100.00%		B3L9D3              	100.00%
Bootstrap support for P0CN74 as seed ortholog is 99%.
Bootstrap support for B3L9D3 as seed ortholog is 100%.

Group of orthologs #154. Best score 421 bits
Score difference with first non-orthologous sequence - C.neoformans:421 P.knowlesi:421

P0CO94              	100.00%		B3L299              	100.00%
Bootstrap support for P0CO94 as seed ortholog is 100%.
Bootstrap support for B3L299 as seed ortholog is 100%.

Group of orthologs #155. Best score 420 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.knowlesi:420

Q5KL32              	100.00%		B3LAJ5              	100.00%
                    	       		B3LA84              	29.53%
Bootstrap support for Q5KL32 as seed ortholog is 100%.
Bootstrap support for B3LAJ5 as seed ortholog is 100%.

Group of orthologs #156. Best score 420 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.knowlesi:420

Q5KGH1              	100.00%		B3L9R6              	100.00%
Bootstrap support for Q5KGH1 as seed ortholog is 100%.
Bootstrap support for B3L9R6 as seed ortholog is 100%.

Group of orthologs #157. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.knowlesi:419

Q5KHR6              	100.00%		B3KZQ8              	100.00%
Bootstrap support for Q5KHR6 as seed ortholog is 100%.
Bootstrap support for B3KZQ8 as seed ortholog is 100%.

Group of orthologs #158. Best score 418 bits
Score difference with first non-orthologous sequence - C.neoformans:418 P.knowlesi:418

Q5KAU9              	100.00%		B3L8C2              	100.00%
Bootstrap support for Q5KAU9 as seed ortholog is 100%.
Bootstrap support for B3L8C2 as seed ortholog is 100%.

Group of orthologs #159. Best score 418 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.knowlesi:117

Q5KKP2              	100.00%		B3LBI8              	100.00%
Bootstrap support for Q5KKP2 as seed ortholog is 97%.
Bootstrap support for B3LBI8 as seed ortholog is 86%.

Group of orthologs #160. Best score 417 bits
Score difference with first non-orthologous sequence - C.neoformans:417 P.knowlesi:417

Q5KMQ2              	100.00%		B3L3U5              	100.00%
Bootstrap support for Q5KMQ2 as seed ortholog is 100%.
Bootstrap support for B3L3U5 as seed ortholog is 100%.

Group of orthologs #161. Best score 416 bits
Score difference with first non-orthologous sequence - C.neoformans:416 P.knowlesi:416

Q5KDU2              	100.00%		B3LA93              	100.00%
Bootstrap support for Q5KDU2 as seed ortholog is 100%.
Bootstrap support for B3LA93 as seed ortholog is 100%.

Group of orthologs #162. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:313 P.knowlesi:413

Q5KEK9              	100.00%		B3LD69              	100.00%
Bootstrap support for Q5KEK9 as seed ortholog is 100%.
Bootstrap support for B3LD69 as seed ortholog is 100%.

Group of orthologs #163. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.knowlesi:151

Q5KQ62              	100.00%		B3L8B0              	100.00%
Bootstrap support for Q5KQ62 as seed ortholog is 99%.
Bootstrap support for B3L8B0 as seed ortholog is 98%.

Group of orthologs #164. Best score 411 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.knowlesi:411

Q5KLG5              	100.00%		B3LBA5              	100.00%
Bootstrap support for Q5KLG5 as seed ortholog is 99%.
Bootstrap support for B3LBA5 as seed ortholog is 100%.

Group of orthologs #165. Best score 409 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.knowlesi:151

P0CQ74              	100.00%		B3LCA3              	100.00%
Bootstrap support for P0CQ74 as seed ortholog is 100%.
Bootstrap support for B3LCA3 as seed ortholog is 99%.

Group of orthologs #166. Best score 409 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.knowlesi:191

Q5KQ07              	100.00%		B3L5Z1              	100.00%
Bootstrap support for Q5KQ07 as seed ortholog is 99%.
Bootstrap support for B3L5Z1 as seed ortholog is 99%.

Group of orthologs #167. Best score 408 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.knowlesi:408

Q5KFJ4              	100.00%		B3L538              	100.00%
Bootstrap support for Q5KFJ4 as seed ortholog is 99%.
Bootstrap support for B3L538 as seed ortholog is 100%.

Group of orthologs #168. Best score 407 bits
Score difference with first non-orthologous sequence - C.neoformans:407 P.knowlesi:324

Q5KAU8              	100.00%		B3LD11              	100.00%
Bootstrap support for Q5KAU8 as seed ortholog is 100%.
Bootstrap support for B3LD11 as seed ortholog is 100%.

Group of orthologs #169. Best score 404 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.knowlesi:192

P0CR00              	100.00%		B3L0G9              	100.00%
Bootstrap support for P0CR00 as seed ortholog is 100%.
Bootstrap support for B3L0G9 as seed ortholog is 99%.

Group of orthologs #170. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.knowlesi:403

Q5K8Q2              	100.00%		B3L7W8              	100.00%
Bootstrap support for Q5K8Q2 as seed ortholog is 100%.
Bootstrap support for B3L7W8 as seed ortholog is 100%.

Group of orthologs #171. Best score 398 bits
Score difference with first non-orthologous sequence - C.neoformans:398 P.knowlesi:163

Q5KKG6              	100.00%		B3L7D9              	100.00%
Bootstrap support for Q5KKG6 as seed ortholog is 100%.
Bootstrap support for B3L7D9 as seed ortholog is 99%.

Group of orthologs #172. Best score 396 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.knowlesi:52

Q5KP72              	100.00%		B3L2U9              	100.00%
Q5KGH3              	7.51%		
Bootstrap support for Q5KP72 as seed ortholog is 97%.
Bootstrap support for B3L2U9 as seed ortholog is 94%.

Group of orthologs #173. Best score 393 bits
Score difference with first non-orthologous sequence - C.neoformans:393 P.knowlesi:393

Q5KF32              	100.00%		B3L733              	100.00%
Bootstrap support for Q5KF32 as seed ortholog is 100%.
Bootstrap support for B3L733 as seed ortholog is 100%.

Group of orthologs #174. Best score 388 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.knowlesi:210

Q5KHJ1              	100.00%		B3KZP7              	100.00%
Bootstrap support for Q5KHJ1 as seed ortholog is 100%.
Bootstrap support for B3KZP7 as seed ortholog is 100%.

Group of orthologs #175. Best score 385 bits
Score difference with first non-orthologous sequence - C.neoformans:385 P.knowlesi:385

Q5KJY4              	100.00%		B3L0B3              	100.00%
Bootstrap support for Q5KJY4 as seed ortholog is 100%.
Bootstrap support for B3L0B3 as seed ortholog is 100%.

Group of orthologs #176. Best score 385 bits
Score difference with first non-orthologous sequence - C.neoformans:385 P.knowlesi:385

Q5KNC3              	100.00%		B3L4M7              	100.00%
Bootstrap support for Q5KNC3 as seed ortholog is 100%.
Bootstrap support for B3L4M7 as seed ortholog is 100%.

Group of orthologs #177. Best score 384 bits
Score difference with first non-orthologous sequence - C.neoformans:384 P.knowlesi:384

Q5K9R3              	100.00%		B3L9M2              	100.00%
Bootstrap support for Q5K9R3 as seed ortholog is 100%.
Bootstrap support for B3L9M2 as seed ortholog is 100%.

Group of orthologs #178. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.knowlesi:383

P0CR40              	100.00%		B3L711              	100.00%
Bootstrap support for P0CR40 as seed ortholog is 90%.
Bootstrap support for B3L711 as seed ortholog is 100%.

Group of orthologs #179. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:383 P.knowlesi:383

Q5KA00              	100.00%		B3LAT9              	100.00%
Bootstrap support for Q5KA00 as seed ortholog is 100%.
Bootstrap support for B3LAT9 as seed ortholog is 100%.

Group of orthologs #180. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.knowlesi:81

Q5KHS2              	100.00%		B3L454              	100.00%
Bootstrap support for Q5KHS2 as seed ortholog is 94%.
Bootstrap support for B3L454 as seed ortholog is 98%.

Group of orthologs #181. Best score 378 bits
Score difference with first non-orthologous sequence - C.neoformans:378 P.knowlesi:227

Q5K9A9              	100.00%		B3LAV4              	100.00%
Q5K9L8              	13.88%		
Bootstrap support for Q5K9A9 as seed ortholog is 100%.
Bootstrap support for B3LAV4 as seed ortholog is 100%.

Group of orthologs #182. Best score 378 bits
Score difference with first non-orthologous sequence - C.neoformans:378 P.knowlesi:182

P0CM88              	100.00%		B3LA33              	100.00%
Bootstrap support for P0CM88 as seed ortholog is 100%.
Bootstrap support for B3LA33 as seed ortholog is 99%.

Group of orthologs #183. Best score 376 bits
Score difference with first non-orthologous sequence - C.neoformans:376 P.knowlesi:376

Q5K8D2              	100.00%		B3L3C9              	100.00%
Bootstrap support for Q5K8D2 as seed ortholog is 100%.
Bootstrap support for B3L3C9 as seed ortholog is 100%.

Group of orthologs #184. Best score 376 bits
Score difference with first non-orthologous sequence - C.neoformans:376 P.knowlesi:376

Q5KIH7              	100.00%		B3L1F8              	100.00%
Bootstrap support for Q5KIH7 as seed ortholog is 100%.
Bootstrap support for B3L1F8 as seed ortholog is 100%.

Group of orthologs #185. Best score 375 bits
Score difference with first non-orthologous sequence - C.neoformans:375 P.knowlesi:375

P0CP26              	100.00%		B3L3M4              	100.00%
Bootstrap support for P0CP26 as seed ortholog is 100%.
Bootstrap support for B3L3M4 as seed ortholog is 100%.

Group of orthologs #186. Best score 375 bits
Score difference with first non-orthologous sequence - C.neoformans:375 P.knowlesi:375

Q5KN95              	100.00%		B3LA75              	100.00%
Bootstrap support for Q5KN95 as seed ortholog is 100%.
Bootstrap support for B3LA75 as seed ortholog is 100%.

Group of orthologs #187. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.knowlesi:374

Q5KK44              	100.00%		B3L4D2              	100.00%
Q5KK43              	58.65%		
Bootstrap support for Q5KK44 as seed ortholog is 100%.
Bootstrap support for B3L4D2 as seed ortholog is 100%.

Group of orthologs #188. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.knowlesi:374

Q5KDP3              	100.00%		B3L9N1              	100.00%
Bootstrap support for Q5KDP3 as seed ortholog is 100%.
Bootstrap support for B3L9N1 as seed ortholog is 100%.

Group of orthologs #189. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.knowlesi:374

Q5KQ22              	100.00%		B3L8R5              	100.00%
Bootstrap support for Q5KQ22 as seed ortholog is 100%.
Bootstrap support for B3L8R5 as seed ortholog is 100%.

Group of orthologs #190. Best score 371 bits
Score difference with first non-orthologous sequence - C.neoformans:371 P.knowlesi:371

Q5KI75              	100.00%		B3L5Q6              	100.00%
Bootstrap support for Q5KI75 as seed ortholog is 100%.
Bootstrap support for B3L5Q6 as seed ortholog is 100%.

Group of orthologs #191. Best score 370 bits
Score difference with first non-orthologous sequence - C.neoformans:370 P.knowlesi:370

Q5KJ33              	100.00%		B3L729              	100.00%
Bootstrap support for Q5KJ33 as seed ortholog is 100%.
Bootstrap support for B3L729 as seed ortholog is 100%.

Group of orthologs #192. Best score 368 bits
Score difference with first non-orthologous sequence - C.neoformans:368 P.knowlesi:368

Q5K7C3              	100.00%		B3L2K6              	100.00%
Bootstrap support for Q5K7C3 as seed ortholog is 100%.
Bootstrap support for B3L2K6 as seed ortholog is 100%.

Group of orthologs #193. Best score 367 bits
Score difference with first non-orthologous sequence - C.neoformans:367 P.knowlesi:172

Q5KHN7              	100.00%		B3LCW5              	100.00%
Bootstrap support for Q5KHN7 as seed ortholog is 100%.
Bootstrap support for B3LCW5 as seed ortholog is 99%.

Group of orthologs #194. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:366 P.knowlesi:366

P0CS78              	100.00%		B3L783              	100.00%
Bootstrap support for P0CS78 as seed ortholog is 100%.
Bootstrap support for B3L783 as seed ortholog is 100%.

Group of orthologs #195. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.knowlesi:366

Q5KC30              	100.00%		B3L9J0              	100.00%
Bootstrap support for Q5KC30 as seed ortholog is 100%.
Bootstrap support for B3L9J0 as seed ortholog is 100%.

Group of orthologs #196. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:366 P.knowlesi:366

Q5KMG4              	100.00%		B3L6G7              	100.00%
Bootstrap support for Q5KMG4 as seed ortholog is 100%.
Bootstrap support for B3L6G7 as seed ortholog is 100%.

Group of orthologs #197. Best score 365 bits
Score difference with first non-orthologous sequence - C.neoformans:365 P.knowlesi:365

Q5KH73              	100.00%		B3L7D0              	100.00%
Bootstrap support for Q5KH73 as seed ortholog is 100%.
Bootstrap support for B3L7D0 as seed ortholog is 100%.

Group of orthologs #198. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:363 P.knowlesi:363

Q5KDD4              	100.00%		B3KZC4              	100.00%
Bootstrap support for Q5KDD4 as seed ortholog is 100%.
Bootstrap support for B3KZC4 as seed ortholog is 100%.

Group of orthologs #199. Best score 362 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.knowlesi:16

P0CP00              	100.00%		B3L8H3              	100.00%
                    	       		B3L6N3              	10.34%
Bootstrap support for P0CP00 as seed ortholog is 100%.
Bootstrap support for B3L8H3 as seed ortholog is 73%.
Alternative seed ortholog is B3L5K9 (16 bits away from this cluster)

Group of orthologs #200. Best score 360 bits
Score difference with first non-orthologous sequence - C.neoformans:360 P.knowlesi:360

P0CQ34              	100.00%		B3L781              	100.00%
Bootstrap support for P0CQ34 as seed ortholog is 100%.
Bootstrap support for B3L781 as seed ortholog is 100%.

Group of orthologs #201. Best score 360 bits
Score difference with first non-orthologous sequence - C.neoformans:360 P.knowlesi:360

Q5KDT3              	100.00%		B3LBE8              	100.00%
Bootstrap support for Q5KDT3 as seed ortholog is 100%.
Bootstrap support for B3LBE8 as seed ortholog is 100%.

Group of orthologs #202. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:359 P.knowlesi:359

Q5KLU5              	100.00%		B3LBD4              	100.00%
Bootstrap support for Q5KLU5 as seed ortholog is 100%.
Bootstrap support for B3LBD4 as seed ortholog is 100%.

Group of orthologs #203. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:358 P.knowlesi:358

Q5KB99              	100.00%		B3L6G4              	100.00%
Bootstrap support for Q5KB99 as seed ortholog is 100%.
Bootstrap support for B3L6G4 as seed ortholog is 100%.

Group of orthologs #204. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:358 P.knowlesi:358

Q5KJI4              	100.00%		B3L6F2              	100.00%
Bootstrap support for Q5KJI4 as seed ortholog is 100%.
Bootstrap support for B3L6F2 as seed ortholog is 100%.

Group of orthologs #205. Best score 357 bits
Score difference with first non-orthologous sequence - C.neoformans:357 P.knowlesi:357

P0CP20              	100.00%		B3LAN7              	100.00%
Bootstrap support for P0CP20 as seed ortholog is 100%.
Bootstrap support for B3LAN7 as seed ortholog is 100%.

Group of orthologs #206. Best score 355 bits
Score difference with first non-orthologous sequence - C.neoformans:355 P.knowlesi:355

Q5KLX6              	100.00%		B3L2D0              	100.00%
Bootstrap support for Q5KLX6 as seed ortholog is 100%.
Bootstrap support for B3L2D0 as seed ortholog is 100%.

Group of orthologs #207. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.knowlesi:354

Q5KAF2              	100.00%		B3L6J8              	100.00%
Bootstrap support for Q5KAF2 as seed ortholog is 100%.
Bootstrap support for B3L6J8 as seed ortholog is 100%.

Group of orthologs #208. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.knowlesi:213

Q5KHS3              	100.00%		B3L070              	100.00%
Bootstrap support for Q5KHS3 as seed ortholog is 100%.
Bootstrap support for B3L070 as seed ortholog is 99%.

Group of orthologs #209. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.knowlesi:354

Q5KG72              	100.00%		B3L4Y1              	100.00%
Bootstrap support for Q5KG72 as seed ortholog is 100%.
Bootstrap support for B3L4Y1 as seed ortholog is 100%.

Group of orthologs #210. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:164

Q5KMR8              	100.00%		B3L472              	100.00%
Bootstrap support for Q5KMR8 as seed ortholog is 100%.
Bootstrap support for B3L472 as seed ortholog is 99%.

Group of orthologs #211. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.knowlesi:207

Q5KMP3              	100.00%		B3LC21              	100.00%
Bootstrap support for Q5KMP3 as seed ortholog is 100%.
Bootstrap support for B3LC21 as seed ortholog is 100%.

Group of orthologs #212. Best score 353 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.knowlesi:353

Q5KHQ8              	100.00%		B3LAE9              	100.00%
Bootstrap support for Q5KHQ8 as seed ortholog is 100%.
Bootstrap support for B3LAE9 as seed ortholog is 100%.

Group of orthologs #213. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.knowlesi:304

Q5KCJ8              	100.00%		B3L122              	100.00%
Bootstrap support for Q5KCJ8 as seed ortholog is 100%.
Bootstrap support for B3L122 as seed ortholog is 100%.

Group of orthologs #214. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:352 P.knowlesi:352

Q5KKB4              	100.00%		B3L0L1              	100.00%
Bootstrap support for Q5KKB4 as seed ortholog is 100%.
Bootstrap support for B3L0L1 as seed ortholog is 100%.

Group of orthologs #215. Best score 351 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.knowlesi:351

Q5KIN5              	100.00%		B3L287              	100.00%
Bootstrap support for Q5KIN5 as seed ortholog is 100%.
Bootstrap support for B3L287 as seed ortholog is 100%.

Group of orthologs #216. Best score 351 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.knowlesi:154

Q5KKV1              	100.00%		B3L755              	100.00%
Bootstrap support for Q5KKV1 as seed ortholog is 89%.
Bootstrap support for B3L755 as seed ortholog is 99%.

Group of orthologs #217. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.knowlesi:349

Q5KII9              	100.00%		B3L878              	100.00%
Bootstrap support for Q5KII9 as seed ortholog is 100%.
Bootstrap support for B3L878 as seed ortholog is 100%.

Group of orthologs #218. Best score 348 bits
Score difference with first non-orthologous sequence - C.neoformans:348 P.knowlesi:348

Q5KEV3              	100.00%		B3L046              	100.00%
Bootstrap support for Q5KEV3 as seed ortholog is 100%.
Bootstrap support for B3L046 as seed ortholog is 100%.

Group of orthologs #219. Best score 347 bits
Score difference with first non-orthologous sequence - C.neoformans:347 P.knowlesi:347

Q5K8Z3              	100.00%		B3L699              	100.00%
Bootstrap support for Q5K8Z3 as seed ortholog is 100%.
Bootstrap support for B3L699 as seed ortholog is 100%.

Group of orthologs #220. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.knowlesi:346

Q5KPN7              	100.00%		B3L6T8              	100.00%
Bootstrap support for Q5KPN7 as seed ortholog is 100%.
Bootstrap support for B3L6T8 as seed ortholog is 100%.

Group of orthologs #221. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.knowlesi:344

Q5KIN6              	100.00%		B3KZ79              	100.00%
Bootstrap support for Q5KIN6 as seed ortholog is 100%.
Bootstrap support for B3KZ79 as seed ortholog is 100%.

Group of orthologs #222. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.knowlesi:92

Q5KH19              	100.00%		B3LAI0              	100.00%
Bootstrap support for Q5KH19 as seed ortholog is 100%.
Bootstrap support for B3LAI0 as seed ortholog is 96%.

Group of orthologs #223. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.knowlesi:342

Q5KQ45              	100.00%		B3L1Y4              	100.00%
Bootstrap support for Q5KQ45 as seed ortholog is 100%.
Bootstrap support for B3L1Y4 as seed ortholog is 100%.

Group of orthologs #224. Best score 341 bits
Score difference with first non-orthologous sequence - C.neoformans:341 P.knowlesi:341

Q5KJQ2              	100.00%		B3L4U7              	100.00%
Bootstrap support for Q5KJQ2 as seed ortholog is 100%.
Bootstrap support for B3L4U7 as seed ortholog is 100%.

Group of orthologs #225. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.knowlesi:293

P0CS48              	100.00%		B3L4H6              	100.00%
Bootstrap support for P0CS48 as seed ortholog is 100%.
Bootstrap support for B3L4H6 as seed ortholog is 100%.

Group of orthologs #226. Best score 337 bits
Score difference with first non-orthologous sequence - C.neoformans:337 P.knowlesi:190

Q5KAU0              	100.00%		B3L520              	100.00%
Bootstrap support for Q5KAU0 as seed ortholog is 100%.
Bootstrap support for B3L520 as seed ortholog is 99%.

Group of orthologs #227. Best score 335 bits
Score difference with first non-orthologous sequence - C.neoformans:335 P.knowlesi:335

Q5KAB8              	100.00%		B3KZH9              	100.00%
Bootstrap support for Q5KAB8 as seed ortholog is 100%.
Bootstrap support for B3KZH9 as seed ortholog is 100%.

Group of orthologs #228. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:334 P.knowlesi:334

Q5K9Z1              	100.00%		B3L7J6              	100.00%
Bootstrap support for Q5K9Z1 as seed ortholog is 100%.
Bootstrap support for B3L7J6 as seed ortholog is 100%.

Group of orthologs #229. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:334 P.knowlesi:334

Q5KHU9              	100.00%		B3L4G8              	100.00%
Bootstrap support for Q5KHU9 as seed ortholog is 100%.
Bootstrap support for B3L4G8 as seed ortholog is 100%.

Group of orthologs #230. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.knowlesi:331

Q5K7N9              	100.00%		B3L1D8              	100.00%
Bootstrap support for Q5K7N9 as seed ortholog is 100%.
Bootstrap support for B3L1D8 as seed ortholog is 100%.

Group of orthologs #231. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.knowlesi:220

Q5KG30              	100.00%		B3L4H5              	100.00%
Bootstrap support for Q5KG30 as seed ortholog is 100%.
Bootstrap support for B3L4H5 as seed ortholog is 100%.

Group of orthologs #232. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.knowlesi:330

P0CO58              	100.00%		B3L8F2              	100.00%
Bootstrap support for P0CO58 as seed ortholog is 100%.
Bootstrap support for B3L8F2 as seed ortholog is 100%.

Group of orthologs #233. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.knowlesi:330

Q5K749              	100.00%		B3L7Z8              	100.00%
Bootstrap support for Q5K749 as seed ortholog is 100%.
Bootstrap support for B3L7Z8 as seed ortholog is 100%.

Group of orthologs #234. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.knowlesi:330

Q5KKE9              	100.00%		B3L4Q7              	100.00%
Bootstrap support for Q5KKE9 as seed ortholog is 100%.
Bootstrap support for B3L4Q7 as seed ortholog is 100%.

Group of orthologs #235. Best score 329 bits
Score difference with first non-orthologous sequence - C.neoformans:329 P.knowlesi:329

Q5KAU7              	100.00%		B3L8M2              	100.00%
Bootstrap support for Q5KAU7 as seed ortholog is 100%.
Bootstrap support for B3L8M2 as seed ortholog is 100%.

Group of orthologs #236. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.knowlesi:149

P0CQ66              	100.00%		B3L8G5              	100.00%
Bootstrap support for P0CQ66 as seed ortholog is 59%.
Alternative seed ortholog is Q5KMN8 (9 bits away from this cluster)
Bootstrap support for B3L8G5 as seed ortholog is 99%.

Group of orthologs #237. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.knowlesi:327

P0CO20              	100.00%		B3LAG9              	100.00%
Bootstrap support for P0CO20 as seed ortholog is 100%.
Bootstrap support for B3LAG9 as seed ortholog is 100%.

Group of orthologs #238. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.knowlesi:327

Q5KED7              	100.00%		B3L310              	100.00%
Bootstrap support for Q5KED7 as seed ortholog is 100%.
Bootstrap support for B3L310 as seed ortholog is 100%.

Group of orthologs #239. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:327 P.knowlesi:327

P0CQ16              	100.00%		B3LAL1              	100.00%
Bootstrap support for P0CQ16 as seed ortholog is 100%.
Bootstrap support for B3LAL1 as seed ortholog is 100%.

Group of orthologs #240. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:327

Q5KE89              	100.00%		B3L436              	100.00%
Bootstrap support for Q5KE89 as seed ortholog is 97%.
Bootstrap support for B3L436 as seed ortholog is 100%.

Group of orthologs #241. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:324 P.knowlesi:324

P0CS70              	100.00%		B3L7S7              	100.00%
Bootstrap support for P0CS70 as seed ortholog is 100%.
Bootstrap support for B3L7S7 as seed ortholog is 100%.

Group of orthologs #242. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:324 P.knowlesi:324

Q5KEV1              	100.00%		B3L9U8              	100.00%
Bootstrap support for Q5KEV1 as seed ortholog is 100%.
Bootstrap support for B3L9U8 as seed ortholog is 100%.

Group of orthologs #243. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.knowlesi:131

Q5KLT3              	100.00%		B3L3U6              	100.00%
Bootstrap support for Q5KLT3 as seed ortholog is 99%.
Bootstrap support for B3L3U6 as seed ortholog is 99%.

Group of orthologs #244. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.knowlesi:322

Q5KE15              	100.00%		B3L4N7              	100.00%
Bootstrap support for Q5KE15 as seed ortholog is 100%.
Bootstrap support for B3L4N7 as seed ortholog is 100%.

Group of orthologs #245. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.knowlesi:322

Q5KML3              	100.00%		B3L0I9              	100.00%
Bootstrap support for Q5KML3 as seed ortholog is 100%.
Bootstrap support for B3L0I9 as seed ortholog is 100%.

Group of orthologs #246. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.knowlesi:322

Q5KLZ4              	100.00%		B3LAC9              	100.00%
Bootstrap support for Q5KLZ4 as seed ortholog is 99%.
Bootstrap support for B3LAC9 as seed ortholog is 100%.

Group of orthologs #247. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.knowlesi:321

Q5KM37              	100.00%		B3L6B4              	100.00%
Bootstrap support for Q5KM37 as seed ortholog is 100%.
Bootstrap support for B3L6B4 as seed ortholog is 100%.

Group of orthologs #248. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:320 P.knowlesi:320

Q5KKG9              	100.00%		B3L6V4              	100.00%
Bootstrap support for Q5KKG9 as seed ortholog is 100%.
Bootstrap support for B3L6V4 as seed ortholog is 100%.

Group of orthologs #249. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:317 P.knowlesi:221

P0CS60              	100.00%		B3L014              	100.00%
Bootstrap support for P0CS60 as seed ortholog is 100%.
Bootstrap support for B3L014 as seed ortholog is 100%.

Group of orthologs #250. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:188

Q5KP84              	100.00%		B3L322              	100.00%
Bootstrap support for Q5KP84 as seed ortholog is 98%.
Bootstrap support for B3L322 as seed ortholog is 100%.

Group of orthologs #251. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.knowlesi:316

Q5KP83              	100.00%		B3L6M4              	100.00%
Bootstrap support for Q5KP83 as seed ortholog is 100%.
Bootstrap support for B3L6M4 as seed ortholog is 100%.

Group of orthologs #252. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.knowlesi:316

Q5KKZ9              	100.00%		B3LBY5              	100.00%
Bootstrap support for Q5KKZ9 as seed ortholog is 100%.
Bootstrap support for B3LBY5 as seed ortholog is 100%.

Group of orthologs #253. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.knowlesi:314

Q5KA97              	100.00%		B3LAN9              	100.00%
Bootstrap support for Q5KA97 as seed ortholog is 100%.
Bootstrap support for B3LAN9 as seed ortholog is 100%.

Group of orthologs #254. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.knowlesi:213

Q5KI17              	100.00%		B3L4Y6              	100.00%
Bootstrap support for Q5KI17 as seed ortholog is 100%.
Bootstrap support for B3L4Y6 as seed ortholog is 100%.

Group of orthologs #255. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.knowlesi:232

Q5KQ06              	100.00%		B3LBF1              	100.00%
Bootstrap support for Q5KQ06 as seed ortholog is 100%.
Bootstrap support for B3LBF1 as seed ortholog is 100%.

Group of orthologs #256. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.knowlesi:312

Q5KDK0              	100.00%		B3L6A1              	100.00%
Bootstrap support for Q5KDK0 as seed ortholog is 99%.
Bootstrap support for B3L6A1 as seed ortholog is 100%.

Group of orthologs #257. Best score 311 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.knowlesi:311

Q5KDZ3              	100.00%		B3LCJ0              	100.00%
Bootstrap support for Q5KDZ3 as seed ortholog is 100%.
Bootstrap support for B3LCJ0 as seed ortholog is 100%.

Group of orthologs #258. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.knowlesi:307

Q5KHT1              	100.00%		B3LDE8              	100.00%
Bootstrap support for Q5KHT1 as seed ortholog is 100%.
Bootstrap support for B3LDE8 as seed ortholog is 100%.

Group of orthologs #259. Best score 306 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.knowlesi:306

Q5KDX5              	100.00%		B3L1L0              	100.00%
                    	       		B3L992              	99.72%
Bootstrap support for Q5KDX5 as seed ortholog is 100%.
Bootstrap support for B3L1L0 as seed ortholog is 100%.

Group of orthologs #260. Best score 306 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.knowlesi:306

Q5KH88              	100.00%		B3L1X3              	100.00%
Bootstrap support for Q5KH88 as seed ortholog is 100%.
Bootstrap support for B3L1X3 as seed ortholog is 100%.

Group of orthologs #261. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.knowlesi:209

Q5K8Z6              	100.00%		B3L1B8              	100.00%
Bootstrap support for Q5K8Z6 as seed ortholog is 100%.
Bootstrap support for B3L1B8 as seed ortholog is 100%.

Group of orthologs #262. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.knowlesi:305

Q5KK90              	100.00%		B3L4J2              	100.00%
Bootstrap support for Q5KK90 as seed ortholog is 100%.
Bootstrap support for B3L4J2 as seed ortholog is 100%.

Group of orthologs #263. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.knowlesi:305

Q5KQ80              	100.00%		B3L828              	100.00%
Bootstrap support for Q5KQ80 as seed ortholog is 100%.
Bootstrap support for B3L828 as seed ortholog is 100%.

Group of orthologs #264. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.knowlesi:304

Q5KKM6              	100.00%		B3KZP9              	100.00%
Bootstrap support for Q5KKM6 as seed ortholog is 99%.
Bootstrap support for B3KZP9 as seed ortholog is 100%.

Group of orthologs #265. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.knowlesi:114

P0CQ92              	100.00%		B3LDG0              	100.00%
Bootstrap support for P0CQ92 as seed ortholog is 99%.
Bootstrap support for B3LDG0 as seed ortholog is 99%.

Group of orthologs #266. Best score 304 bits
Score difference with first non-orthologous sequence - C.neoformans:304 P.knowlesi:304

Q5KGK2              	100.00%		B3L4Y8              	100.00%
Bootstrap support for Q5KGK2 as seed ortholog is 100%.
Bootstrap support for B3L4Y8 as seed ortholog is 100%.

Group of orthologs #267. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.knowlesi:302

Q5K796              	100.00%		B3L9C8              	100.00%
Bootstrap support for Q5K796 as seed ortholog is 100%.
Bootstrap support for B3L9C8 as seed ortholog is 100%.

Group of orthologs #268. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.knowlesi:14

Q5KIF1              	100.00%		B3KZR4              	100.00%
Bootstrap support for Q5KIF1 as seed ortholog is 99%.
Bootstrap support for B3KZR4 as seed ortholog is 60%.
Alternative seed ortholog is B3L6N0 (14 bits away from this cluster)

Group of orthologs #269. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.knowlesi:302

P0CO08              	100.00%		B3LD14              	100.00%
Bootstrap support for P0CO08 as seed ortholog is 100%.
Bootstrap support for B3LD14 as seed ortholog is 100%.

Group of orthologs #270. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.knowlesi:302

Q5KMA6              	100.00%		B3LAL7              	100.00%
Bootstrap support for Q5KMA6 as seed ortholog is 100%.
Bootstrap support for B3LAL7 as seed ortholog is 100%.

Group of orthologs #271. Best score 301 bits
Score difference with first non-orthologous sequence - C.neoformans:301 P.knowlesi:301

Q5KAS7              	100.00%		B3L8Q5              	100.00%
Bootstrap support for Q5KAS7 as seed ortholog is 100%.
Bootstrap support for B3L8Q5 as seed ortholog is 100%.

Group of orthologs #272. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.knowlesi:300

Q5KPY7              	100.00%		B3L4U8              	100.00%
Q5KKM8              	17.28%		
Bootstrap support for Q5KPY7 as seed ortholog is 100%.
Bootstrap support for B3L4U8 as seed ortholog is 100%.

Group of orthologs #273. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.knowlesi:299

Q5KNK2              	100.00%		B3L4K6              	100.00%
Bootstrap support for Q5KNK2 as seed ortholog is 100%.
Bootstrap support for B3L4K6 as seed ortholog is 100%.

Group of orthologs #274. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:298 P.knowlesi:298

P0CR52              	100.00%		B3L7V3              	100.00%
Bootstrap support for P0CR52 as seed ortholog is 100%.
Bootstrap support for B3L7V3 as seed ortholog is 100%.

Group of orthologs #275. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.knowlesi:297

P0CM24              	100.00%		B3L1G8              	100.00%
Bootstrap support for P0CM24 as seed ortholog is 100%.
Bootstrap support for B3L1G8 as seed ortholog is 100%.

Group of orthologs #276. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.knowlesi:297

P0CQ14              	100.00%		B3L268              	100.00%
Bootstrap support for P0CQ14 as seed ortholog is 100%.
Bootstrap support for B3L268 as seed ortholog is 100%.

Group of orthologs #277. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.knowlesi:297

P0CP02              	100.00%		B3L4Y9              	100.00%
Bootstrap support for P0CP02 as seed ortholog is 100%.
Bootstrap support for B3L4Y9 as seed ortholog is 100%.

Group of orthologs #278. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.knowlesi:296

P0CN46              	100.00%		B3LB47              	100.00%
Bootstrap support for P0CN46 as seed ortholog is 100%.
Bootstrap support for B3LB47 as seed ortholog is 100%.

Group of orthologs #279. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.knowlesi:296

Q5KQ94              	100.00%		B3L3U0              	100.00%
Bootstrap support for Q5KQ94 as seed ortholog is 100%.
Bootstrap support for B3L3U0 as seed ortholog is 100%.

Group of orthologs #280. Best score 293 bits
Score difference with first non-orthologous sequence - C.neoformans:13 P.knowlesi:130

Q5KL60              	100.00%		B3L611              	100.00%
Bootstrap support for Q5KL60 as seed ortholog is 52%.
Alternative seed ortholog is Q5KC09 (13 bits away from this cluster)
Bootstrap support for B3L611 as seed ortholog is 99%.

Group of orthologs #281. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.knowlesi:292

Q5KEJ6              	100.00%		B3L5A9              	100.00%
Bootstrap support for Q5KEJ6 as seed ortholog is 100%.
Bootstrap support for B3L5A9 as seed ortholog is 100%.

Group of orthologs #282. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.knowlesi:97

P0CM16              	100.00%		B3L1W8              	100.00%
Bootstrap support for P0CM16 as seed ortholog is 98%.
Bootstrap support for B3L1W8 as seed ortholog is 100%.

Group of orthologs #283. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:291 P.knowlesi:291

Q5KK29              	100.00%		B3L712              	100.00%
Bootstrap support for Q5KK29 as seed ortholog is 100%.
Bootstrap support for B3L712 as seed ortholog is 100%.

Group of orthologs #284. Best score 290 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.knowlesi:199

Q5K7W1              	100.00%		B3L2D4              	100.00%
Q5K7W2              	76.99%		
Bootstrap support for Q5K7W1 as seed ortholog is 100%.
Bootstrap support for B3L2D4 as seed ortholog is 100%.

Group of orthologs #285. Best score 290 bits
Score difference with first non-orthologous sequence - C.neoformans:290 P.knowlesi:290

P0CQ60              	100.00%		B3KZ23              	100.00%
Bootstrap support for P0CQ60 as seed ortholog is 100%.
Bootstrap support for B3KZ23 as seed ortholog is 100%.

Group of orthologs #286. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.knowlesi:203

Q5KGN7              	100.00%		B3L4Y0              	100.00%
Bootstrap support for Q5KGN7 as seed ortholog is 100%.
Bootstrap support for B3L4Y0 as seed ortholog is 100%.

Group of orthologs #287. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.knowlesi:285

Q5K8L8              	100.00%		B3L9T7              	100.00%
Bootstrap support for Q5K8L8 as seed ortholog is 100%.
Bootstrap support for B3L9T7 as seed ortholog is 100%.

Group of orthologs #288. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:100

Q5KP65              	100.00%		B3L1K2              	100.00%
Bootstrap support for Q5KP65 as seed ortholog is 98%.
Bootstrap support for B3L1K2 as seed ortholog is 99%.

Group of orthologs #289. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.knowlesi:283

P0CQ58              	100.00%		B3L3W7              	100.00%
Bootstrap support for P0CQ58 as seed ortholog is 100%.
Bootstrap support for B3L3W7 as seed ortholog is 100%.

Group of orthologs #290. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.knowlesi:283

Q5KHS1              	100.00%		B3L0S1              	100.00%
Bootstrap support for Q5KHS1 as seed ortholog is 100%.
Bootstrap support for B3L0S1 as seed ortholog is 100%.

Group of orthologs #291. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.knowlesi:282

Q5KAB5              	100.00%		B3L0L0              	100.00%
Bootstrap support for Q5KAB5 as seed ortholog is 100%.
Bootstrap support for B3L0L0 as seed ortholog is 100%.

Group of orthologs #292. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.knowlesi:282

Q5KLS2              	100.00%		B3LDA2              	100.00%
Bootstrap support for Q5KLS2 as seed ortholog is 100%.
Bootstrap support for B3LDA2 as seed ortholog is 100%.

Group of orthologs #293. Best score 281 bits
Score difference with first non-orthologous sequence - C.neoformans:281 P.knowlesi:281

Q5K9S7              	100.00%		B3L8A8              	100.00%
Bootstrap support for Q5K9S7 as seed ortholog is 100%.
Bootstrap support for B3L8A8 as seed ortholog is 100%.

Group of orthologs #294. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.knowlesi:280

Q5KKT0              	100.00%		B3L1M7              	100.00%
Bootstrap support for Q5KKT0 as seed ortholog is 100%.
Bootstrap support for B3L1M7 as seed ortholog is 100%.

Group of orthologs #295. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.knowlesi:280

Q5KIZ9              	100.00%		B3LC55              	100.00%
Bootstrap support for Q5KIZ9 as seed ortholog is 100%.
Bootstrap support for B3LC55 as seed ortholog is 100%.

Group of orthologs #296. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.knowlesi:144

Q5KJE3              	100.00%		B3L769              	100.00%
Bootstrap support for Q5KJE3 as seed ortholog is 100%.
Bootstrap support for B3L769 as seed ortholog is 99%.

Group of orthologs #297. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.knowlesi:279

Q5KMC0              	100.00%		B3L5A2              	100.00%
Bootstrap support for Q5KMC0 as seed ortholog is 100%.
Bootstrap support for B3L5A2 as seed ortholog is 100%.

Group of orthologs #298. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.knowlesi:279

Q5KNU1              	100.00%		B3L7F1              	100.00%
Bootstrap support for Q5KNU1 as seed ortholog is 100%.
Bootstrap support for B3L7F1 as seed ortholog is 100%.

Group of orthologs #299. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.knowlesi:120

Q5KLR7              	100.00%		B3LBB4              	100.00%
Bootstrap support for Q5KLR7 as seed ortholog is 98%.
Bootstrap support for B3LBB4 as seed ortholog is 99%.

Group of orthologs #300. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.knowlesi:279

Q5KQ43              	100.00%		B3L8L1              	100.00%
Bootstrap support for Q5KQ43 as seed ortholog is 100%.
Bootstrap support for B3L8L1 as seed ortholog is 100%.

Group of orthologs #301. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.knowlesi:278

Q5KC51              	100.00%		B3KZR6              	100.00%
Bootstrap support for Q5KC51 as seed ortholog is 100%.
Bootstrap support for B3KZR6 as seed ortholog is 100%.

Group of orthologs #302. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.knowlesi:276

Q5KQ18              	100.00%		B3L0Z7              	100.00%
Bootstrap support for Q5KQ18 as seed ortholog is 100%.
Bootstrap support for B3L0Z7 as seed ortholog is 100%.

Group of orthologs #303. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.knowlesi:275

Q5K9A0              	100.00%		B3L9M5              	100.00%
Q5KEE6              	9.55%		
Bootstrap support for Q5K9A0 as seed ortholog is 100%.
Bootstrap support for B3L9M5 as seed ortholog is 100%.

Group of orthologs #304. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.knowlesi:275

Q5KPZ1              	100.00%		B3L9A1              	100.00%
Bootstrap support for Q5KPZ1 as seed ortholog is 100%.
Bootstrap support for B3L9A1 as seed ortholog is 100%.

Group of orthologs #305. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:274

Q5K9N8              	100.00%		B3L0G0              	100.00%
Bootstrap support for Q5K9N8 as seed ortholog is 97%.
Bootstrap support for B3L0G0 as seed ortholog is 100%.

Group of orthologs #306. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.knowlesi:273

Q5KK64              	100.00%		B3L831              	100.00%
Bootstrap support for Q5KK64 as seed ortholog is 100%.
Bootstrap support for B3L831 as seed ortholog is 100%.

Group of orthologs #307. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.knowlesi:182

Q5K6Z8              	100.00%		B3LCP1              	100.00%
Bootstrap support for Q5K6Z8 as seed ortholog is 100%.
Bootstrap support for B3LCP1 as seed ortholog is 99%.

Group of orthologs #308. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.knowlesi:272

Q5KHZ2              	100.00%		B3LB03              	100.00%
Bootstrap support for Q5KHZ2 as seed ortholog is 100%.
Bootstrap support for B3LB03 as seed ortholog is 100%.

Group of orthologs #309. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.knowlesi:149

Q5K9V2              	100.00%		B3L342              	100.00%
Bootstrap support for Q5K9V2 as seed ortholog is 100%.
Bootstrap support for B3L342 as seed ortholog is 100%.

Group of orthologs #310. Best score 268 bits
Score difference with first non-orthologous sequence - C.neoformans:268 P.knowlesi:268

Q5KJD4              	100.00%		B3L1H7              	100.00%
Bootstrap support for Q5KJD4 as seed ortholog is 100%.
Bootstrap support for B3L1H7 as seed ortholog is 100%.

Group of orthologs #311. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.knowlesi:267

Q5KGR5              	100.00%		B3LBU1              	100.00%
Bootstrap support for Q5KGR5 as seed ortholog is 100%.
Bootstrap support for B3LBU1 as seed ortholog is 100%.

Group of orthologs #312. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:265 P.knowlesi:265

Q5KDM0              	100.00%		B3LCC4              	100.00%
Bootstrap support for Q5KDM0 as seed ortholog is 100%.
Bootstrap support for B3LCC4 as seed ortholog is 100%.

Group of orthologs #313. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.knowlesi:263

Q5KJU2              	100.00%		B3LAE0              	100.00%
Bootstrap support for Q5KJU2 as seed ortholog is 100%.
Bootstrap support for B3LAE0 as seed ortholog is 100%.

Group of orthologs #314. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.knowlesi:120

Q5K722              	100.00%		B3L359              	100.00%
Bootstrap support for Q5K722 as seed ortholog is 100%.
Bootstrap support for B3L359 as seed ortholog is 98%.

Group of orthologs #315. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.knowlesi:198

Q5KBU1              	100.00%		B3L1W1              	100.00%
Bootstrap support for Q5KBU1 as seed ortholog is 100%.
Bootstrap support for B3L1W1 as seed ortholog is 100%.

Group of orthologs #316. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.knowlesi:262

Q5KHA6              	100.00%		B3KZJ7              	100.00%
Bootstrap support for Q5KHA6 as seed ortholog is 100%.
Bootstrap support for B3KZJ7 as seed ortholog is 100%.

Group of orthologs #317. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.knowlesi:261

P0CN44              	100.00%		B3L691              	100.00%
Bootstrap support for P0CN44 as seed ortholog is 100%.
Bootstrap support for B3L691 as seed ortholog is 100%.

Group of orthologs #318. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.knowlesi:261

Q5KCJ9              	100.00%		B3L8Q7              	100.00%
Bootstrap support for Q5KCJ9 as seed ortholog is 100%.
Bootstrap support for B3L8Q7 as seed ortholog is 100%.

Group of orthologs #319. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.knowlesi:260

Q5K6Y3              	100.00%		B3LCV0              	100.00%
Bootstrap support for Q5K6Y3 as seed ortholog is 100%.
Bootstrap support for B3LCV0 as seed ortholog is 100%.

Group of orthologs #320. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.knowlesi:260

Q5KP39              	100.00%		B3L9B3              	100.00%
Bootstrap support for Q5KP39 as seed ortholog is 100%.
Bootstrap support for B3L9B3 as seed ortholog is 100%.

Group of orthologs #321. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.knowlesi:259

Q5KPK4              	100.00%		B3L640              	100.00%
Bootstrap support for Q5KPK4 as seed ortholog is 100%.
Bootstrap support for B3L640 as seed ortholog is 100%.

Group of orthologs #322. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.knowlesi:258

P0CQ46              	100.00%		B3LAJ9              	100.00%
Bootstrap support for P0CQ46 as seed ortholog is 100%.
Bootstrap support for B3LAJ9 as seed ortholog is 100%.

Group of orthologs #323. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.knowlesi:256

P0CO88              	100.00%		B3L3C0              	100.00%
Bootstrap support for P0CO88 as seed ortholog is 100%.
Bootstrap support for B3L3C0 as seed ortholog is 100%.

Group of orthologs #324. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.knowlesi:104

Q5KC34              	100.00%		B3LA76              	100.00%
Q5KHE5              	13.44%		
P0CP66              	11.68%		
P0CP68              	7.04%		
Bootstrap support for Q5KC34 as seed ortholog is 100%.
Bootstrap support for B3LA76 as seed ortholog is 99%.

Group of orthologs #325. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.knowlesi:255

Q5KCY4              	100.00%		B3L7H9              	100.00%
Bootstrap support for Q5KCY4 as seed ortholog is 100%.
Bootstrap support for B3L7H9 as seed ortholog is 100%.

Group of orthologs #326. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.knowlesi:255

Q5KGE3              	100.00%		B3LA05              	100.00%
Bootstrap support for Q5KGE3 as seed ortholog is 100%.
Bootstrap support for B3LA05 as seed ortholog is 100%.

Group of orthologs #327. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.knowlesi:255

Q5KM80              	100.00%		B3L5B3              	100.00%
Bootstrap support for Q5KM80 as seed ortholog is 100%.
Bootstrap support for B3L5B3 as seed ortholog is 100%.

Group of orthologs #328. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.knowlesi:110

Q5KDX8              	100.00%		B3L8Y4              	100.00%
Q5KCA3              	15.68%		
Bootstrap support for Q5KDX8 as seed ortholog is 100%.
Bootstrap support for B3L8Y4 as seed ortholog is 99%.

Group of orthologs #329. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.knowlesi:252

Q5K7X5              	100.00%		B3L0V6              	100.00%
Q5K826              	55.88%		
Q5KH05              	5.95%		
Bootstrap support for Q5K7X5 as seed ortholog is 100%.
Bootstrap support for B3L0V6 as seed ortholog is 100%.

Group of orthologs #330. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.knowlesi:251

Q5KI89              	100.00%		B3L7E0              	100.00%
Bootstrap support for Q5KI89 as seed ortholog is 100%.
Bootstrap support for B3L7E0 as seed ortholog is 100%.

Group of orthologs #331. Best score 250 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.knowlesi:250

Q5KCK7              	100.00%		B3KZR0              	100.00%
Bootstrap support for Q5KCK7 as seed ortholog is 100%.
Bootstrap support for B3KZR0 as seed ortholog is 100%.

Group of orthologs #332. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:22 P.knowlesi:24

Q5K8I9              	100.00%		B3L6D9              	100.00%
Bootstrap support for Q5K8I9 as seed ortholog is 86%.
Bootstrap support for B3L6D9 as seed ortholog is 88%.

Group of orthologs #333. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.knowlesi:248

Q5K9L0              	100.00%		B3KZS9              	100.00%
Bootstrap support for Q5K9L0 as seed ortholog is 100%.
Bootstrap support for B3KZS9 as seed ortholog is 100%.

Group of orthologs #334. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.knowlesi:248

Q5K947              	100.00%		B3L0A6              	100.00%
Bootstrap support for Q5K947 as seed ortholog is 100%.
Bootstrap support for B3L0A6 as seed ortholog is 100%.

Group of orthologs #335. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.knowlesi:247

Q5KIQ7              	100.00%		B3L1T8              	100.00%
Bootstrap support for Q5KIQ7 as seed ortholog is 100%.
Bootstrap support for B3L1T8 as seed ortholog is 100%.

Group of orthologs #336. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.knowlesi:247

Q5KDR1              	100.00%		B3L9E8              	100.00%
Bootstrap support for Q5KDR1 as seed ortholog is 100%.
Bootstrap support for B3L9E8 as seed ortholog is 100%.

Group of orthologs #337. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.knowlesi:246

Q5KH10              	100.00%		B3LA31              	100.00%
Bootstrap support for Q5KH10 as seed ortholog is 100%.
Bootstrap support for B3LA31 as seed ortholog is 100%.

Group of orthologs #338. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.knowlesi:245

Q5KKN8              	100.00%		B3L4B2              	100.00%
Bootstrap support for Q5KKN8 as seed ortholog is 99%.
Bootstrap support for B3L4B2 as seed ortholog is 100%.

Group of orthologs #339. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.knowlesi:245

Q5KN57              	100.00%		B3L2G8              	100.00%
Bootstrap support for Q5KN57 as seed ortholog is 32%.
Alternative seed ortholog is Q5KEE8 (19 bits away from this cluster)
Bootstrap support for B3L2G8 as seed ortholog is 100%.

Group of orthologs #340. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.knowlesi:245

Q5KIV1              	100.00%		B3L786              	100.00%
Bootstrap support for Q5KIV1 as seed ortholog is 100%.
Bootstrap support for B3L786 as seed ortholog is 100%.

Group of orthologs #341. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.knowlesi:244

P0CR74              	100.00%		B3LA03              	100.00%
Bootstrap support for P0CR74 as seed ortholog is 100%.
Bootstrap support for B3LA03 as seed ortholog is 100%.

Group of orthologs #342. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.knowlesi:244

Q5KIJ1              	100.00%		B3L8H9              	100.00%
Bootstrap support for Q5KIJ1 as seed ortholog is 100%.
Bootstrap support for B3L8H9 as seed ortholog is 100%.

Group of orthologs #343. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.knowlesi:243

P0CQ56              	100.00%		B3L230              	100.00%
Bootstrap support for P0CQ56 as seed ortholog is 100%.
Bootstrap support for B3L230 as seed ortholog is 100%.

Group of orthologs #344. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.knowlesi:243

Q5K9Y2              	100.00%		B3L5A0              	100.00%
Bootstrap support for Q5K9Y2 as seed ortholog is 100%.
Bootstrap support for B3L5A0 as seed ortholog is 100%.

Group of orthologs #345. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.knowlesi:243

Q5KGW0              	100.00%		B3L665              	100.00%
Bootstrap support for Q5KGW0 as seed ortholog is 100%.
Bootstrap support for B3L665 as seed ortholog is 100%.

Group of orthologs #346. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.knowlesi:123

Q5KF72              	100.00%		B3LB25              	100.00%
Bootstrap support for Q5KF72 as seed ortholog is 100%.
Bootstrap support for B3LB25 as seed ortholog is 100%.

Group of orthologs #347. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.knowlesi:243

Q5KM94              	100.00%		B3L5M0              	100.00%
Bootstrap support for Q5KM94 as seed ortholog is 100%.
Bootstrap support for B3L5M0 as seed ortholog is 100%.

Group of orthologs #348. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.knowlesi:124

Q5KJK0              	100.00%		B3LBF2              	100.00%
Bootstrap support for Q5KJK0 as seed ortholog is 100%.
Bootstrap support for B3LBF2 as seed ortholog is 100%.

Group of orthologs #349. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.knowlesi:240

Q5KAX6              	100.00%		B3LAK2              	100.00%
Bootstrap support for Q5KAX6 as seed ortholog is 100%.
Bootstrap support for B3LAK2 as seed ortholog is 100%.

Group of orthologs #350. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.knowlesi:240

Q5KM99              	100.00%		B3LBL4              	100.00%
Bootstrap support for Q5KM99 as seed ortholog is 100%.
Bootstrap support for B3LBL4 as seed ortholog is 100%.

Group of orthologs #351. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.knowlesi:239

Q5KI80              	100.00%		B3L0N7              	100.00%
                    	       		B3L6H3              	9.99%
Bootstrap support for Q5KI80 as seed ortholog is 97%.
Bootstrap support for B3L0N7 as seed ortholog is 100%.

Group of orthologs #352. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.knowlesi:239

Q5KKJ4              	100.00%		B3L0B9              	100.00%
Bootstrap support for Q5KKJ4 as seed ortholog is 100%.
Bootstrap support for B3L0B9 as seed ortholog is 100%.

Group of orthologs #353. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.knowlesi:239

Q5KLS0              	100.00%		B3L7X1              	100.00%
Bootstrap support for Q5KLS0 as seed ortholog is 100%.
Bootstrap support for B3L7X1 as seed ortholog is 100%.

Group of orthologs #354. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.knowlesi:238

Q5KAZ7              	100.00%		B3L228              	100.00%
Q5KDJ3              	5.14%		
Bootstrap support for Q5KAZ7 as seed ortholog is 100%.
Bootstrap support for B3L228 as seed ortholog is 100%.

Group of orthologs #355. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.knowlesi:238

Q5KEF7              	100.00%		B3L7N3              	100.00%
Bootstrap support for Q5KEF7 as seed ortholog is 100%.
Bootstrap support for B3L7N3 as seed ortholog is 100%.

Group of orthologs #356. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.knowlesi:236

Q5KIH5              	100.00%		B3L2Z8              	100.00%
Bootstrap support for Q5KIH5 as seed ortholog is 100%.
Bootstrap support for B3L2Z8 as seed ortholog is 100%.

Group of orthologs #357. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.knowlesi:236

Q5KFS1              	100.00%		B3LD25              	100.00%
Bootstrap support for Q5KFS1 as seed ortholog is 96%.
Bootstrap support for B3LD25 as seed ortholog is 100%.

Group of orthologs #358. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.knowlesi:235

Q5KCE8              	100.00%		B3L0H3              	100.00%
Bootstrap support for Q5KCE8 as seed ortholog is 100%.
Bootstrap support for B3L0H3 as seed ortholog is 100%.

Group of orthologs #359. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.knowlesi:235

P0CR16              	100.00%		B3LCG6              	100.00%
Bootstrap support for P0CR16 as seed ortholog is 100%.
Bootstrap support for B3LCG6 as seed ortholog is 100%.

Group of orthologs #360. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.knowlesi:235

Q5KJJ3              	100.00%		B3L2R4              	100.00%
Bootstrap support for Q5KJJ3 as seed ortholog is 100%.
Bootstrap support for B3L2R4 as seed ortholog is 100%.

Group of orthologs #361. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.knowlesi:111

P0CO04              	100.00%		B3L7V1              	100.00%
Q5KMT3              	56.25%		B3L7M9              	53.33%
Bootstrap support for P0CO04 as seed ortholog is 99%.
Bootstrap support for B3L7V1 as seed ortholog is 100%.

Group of orthologs #362. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:234 P.knowlesi:234

Q5KMT6              	100.00%		B3L0B5              	100.00%
Bootstrap support for Q5KMT6 as seed ortholog is 100%.
Bootstrap support for B3L0B5 as seed ortholog is 100%.

Group of orthologs #363. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.knowlesi:75

Q5KGZ4              	100.00%		B3LC19              	100.00%
Bootstrap support for Q5KGZ4 as seed ortholog is 99%.
Bootstrap support for B3LC19 as seed ortholog is 99%.

Group of orthologs #364. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.knowlesi:232

Q5KFV6              	100.00%		B3L2A8              	100.00%
Bootstrap support for Q5KFV6 as seed ortholog is 100%.
Bootstrap support for B3L2A8 as seed ortholog is 100%.

Group of orthologs #365. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.knowlesi:232

Q5KCX9              	100.00%		B3L5I1              	100.00%
Bootstrap support for Q5KCX9 as seed ortholog is 100%.
Bootstrap support for B3L5I1 as seed ortholog is 100%.

Group of orthologs #366. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.knowlesi:232

Q5KFT0              	100.00%		B3L6A6              	100.00%
Bootstrap support for Q5KFT0 as seed ortholog is 100%.
Bootstrap support for B3L6A6 as seed ortholog is 100%.

Group of orthologs #367. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.knowlesi:232

Q5KFT4              	100.00%		B3L9D4              	100.00%
Bootstrap support for Q5KFT4 as seed ortholog is 100%.
Bootstrap support for B3L9D4 as seed ortholog is 100%.

Group of orthologs #368. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.knowlesi:231

Q5KPH3              	100.00%		B3L739              	100.00%
Bootstrap support for Q5KPH3 as seed ortholog is 100%.
Bootstrap support for B3L739 as seed ortholog is 100%.

Group of orthologs #369. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:136

P0CR30              	100.00%		B3L1J2              	100.00%
Bootstrap support for P0CR30 as seed ortholog is 100%.
Bootstrap support for B3L1J2 as seed ortholog is 100%.

Group of orthologs #370. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.knowlesi:230

Q5KBD9              	100.00%		B3L5C6              	100.00%
Bootstrap support for Q5KBD9 as seed ortholog is 100%.
Bootstrap support for B3L5C6 as seed ortholog is 100%.

Group of orthologs #371. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.knowlesi:230

Q5KEZ6              	100.00%		B3L3M9              	100.00%
Bootstrap support for Q5KEZ6 as seed ortholog is 100%.
Bootstrap support for B3L3M9 as seed ortholog is 100%.

Group of orthologs #372. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:230

Q5KNG0              	100.00%		B3L9W3              	100.00%
Bootstrap support for Q5KNG0 as seed ortholog is 99%.
Bootstrap support for B3L9W3 as seed ortholog is 100%.

Group of orthologs #373. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.knowlesi:229

Q5KNQ1              	100.00%		B3L2P1              	100.00%
Bootstrap support for Q5KNQ1 as seed ortholog is 100%.
Bootstrap support for B3L2P1 as seed ortholog is 100%.

Group of orthologs #374. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.knowlesi:117

Q5K7H6              	100.00%		B3L111              	100.00%
Bootstrap support for Q5K7H6 as seed ortholog is 100%.
Bootstrap support for B3L111 as seed ortholog is 99%.

Group of orthologs #375. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.knowlesi:228

P0CS34              	100.00%		B3LAV2              	100.00%
Bootstrap support for P0CS34 as seed ortholog is 100%.
Bootstrap support for B3LAV2 as seed ortholog is 100%.

Group of orthologs #376. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.knowlesi:113

Q5KKS0              	100.00%		B3L024              	100.00%
Bootstrap support for Q5KKS0 as seed ortholog is 99%.
Bootstrap support for B3L024 as seed ortholog is 99%.

Group of orthologs #377. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.knowlesi:228

Q5KBS2              	100.00%		B3LCV6              	100.00%
Bootstrap support for Q5KBS2 as seed ortholog is 100%.
Bootstrap support for B3LCV6 as seed ortholog is 100%.

Group of orthologs #378. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.knowlesi:227

Q5KFD9              	100.00%		B3L3Q4              	100.00%
Bootstrap support for Q5KFD9 as seed ortholog is 100%.
Bootstrap support for B3L3Q4 as seed ortholog is 100%.

Group of orthologs #379. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.knowlesi:226

Q5KC89              	100.00%		B3L1T3              	100.00%
Bootstrap support for Q5KC89 as seed ortholog is 100%.
Bootstrap support for B3L1T3 as seed ortholog is 100%.

Group of orthologs #380. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.knowlesi:226

Q5K9R5              	100.00%		B3L752              	100.00%
Bootstrap support for Q5K9R5 as seed ortholog is 100%.
Bootstrap support for B3L752 as seed ortholog is 100%.

Group of orthologs #381. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.knowlesi:226

Q5KPE3              	100.00%		B3L0U1              	100.00%
Bootstrap support for Q5KPE3 as seed ortholog is 100%.
Bootstrap support for B3L0U1 as seed ortholog is 100%.

Group of orthologs #382. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.knowlesi:226

Q5KKC2              	100.00%		B3L8V3              	100.00%
Bootstrap support for Q5KKC2 as seed ortholog is 100%.
Bootstrap support for B3L8V3 as seed ortholog is 100%.

Group of orthologs #383. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.knowlesi:225

Q5KDD6              	100.00%		B3L4C7              	100.00%
Bootstrap support for Q5KDD6 as seed ortholog is 100%.
Bootstrap support for B3L4C7 as seed ortholog is 100%.

Group of orthologs #384. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.knowlesi:225

Q5KFG2              	100.00%		B3L787              	100.00%
Bootstrap support for Q5KFG2 as seed ortholog is 100%.
Bootstrap support for B3L787 as seed ortholog is 100%.

Group of orthologs #385. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.knowlesi:223

Q5KA19              	100.00%		B3L086              	100.00%
Bootstrap support for Q5KA19 as seed ortholog is 100%.
Bootstrap support for B3L086 as seed ortholog is 100%.

Group of orthologs #386. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:222 P.knowlesi:222

Q5KMA4              	100.00%		B3L5H2              	100.00%
Bootstrap support for Q5KMA4 as seed ortholog is 100%.
Bootstrap support for B3L5H2 as seed ortholog is 100%.

Group of orthologs #387. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:221 P.knowlesi:221

Q5K8I1              	100.00%		B3L9V4              	100.00%
Bootstrap support for Q5K8I1 as seed ortholog is 100%.
Bootstrap support for B3L9V4 as seed ortholog is 100%.

Group of orthologs #388. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:221 P.knowlesi:221

Q5KKE2              	100.00%		B3L094              	100.00%
Bootstrap support for Q5KKE2 as seed ortholog is 100%.
Bootstrap support for B3L094 as seed ortholog is 100%.

Group of orthologs #389. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:221 P.knowlesi:221

Q5KEN3              	100.00%		B3LAC7              	100.00%
Bootstrap support for Q5KEN3 as seed ortholog is 100%.
Bootstrap support for B3LAC7 as seed ortholog is 100%.

Group of orthologs #390. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.knowlesi:92

P0CP82              	100.00%		B3KZA2              	100.00%
Bootstrap support for P0CP82 as seed ortholog is 99%.
Bootstrap support for B3KZA2 as seed ortholog is 99%.

Group of orthologs #391. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.knowlesi:220

Q5K9U9              	100.00%		B3L5K0              	100.00%
Bootstrap support for Q5K9U9 as seed ortholog is 100%.
Bootstrap support for B3L5K0 as seed ortholog is 100%.

Group of orthologs #392. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.knowlesi:220

Q5KJK3              	100.00%		B3L681              	100.00%
Bootstrap support for Q5KJK3 as seed ortholog is 100%.
Bootstrap support for B3L681 as seed ortholog is 100%.

Group of orthologs #393. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.knowlesi:220

Q5KQ60              	100.00%		B3L3E0              	100.00%
Bootstrap support for Q5KQ60 as seed ortholog is 99%.
Bootstrap support for B3L3E0 as seed ortholog is 100%.

Group of orthologs #394. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.knowlesi:136

P0CP86              	100.00%		B3L4W6              	100.00%
Bootstrap support for P0CP86 as seed ortholog is 99%.
Bootstrap support for B3L4W6 as seed ortholog is 100%.

Group of orthologs #395. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.knowlesi:219

Q5KFT1              	100.00%		B3L9S4              	100.00%
Bootstrap support for Q5KFT1 as seed ortholog is 100%.
Bootstrap support for B3L9S4 as seed ortholog is 100%.

Group of orthologs #396. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.knowlesi:219

Q5KMS5              	100.00%		B3LD49              	100.00%
Bootstrap support for Q5KMS5 as seed ortholog is 100%.
Bootstrap support for B3LD49 as seed ortholog is 100%.

Group of orthologs #397. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.knowlesi:215

Q5KF83              	100.00%		B3L1F7              	100.00%
Bootstrap support for Q5KF83 as seed ortholog is 100%.
Bootstrap support for B3L1F7 as seed ortholog is 100%.

Group of orthologs #398. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.knowlesi:215

Q5K8J5              	100.00%		B3L8I7              	100.00%
Bootstrap support for Q5K8J5 as seed ortholog is 100%.
Bootstrap support for B3L8I7 as seed ortholog is 100%.

Group of orthologs #399. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:172

Q5KHS6              	100.00%		B3L5R4              	100.00%
Bootstrap support for Q5KHS6 as seed ortholog is 97%.
Bootstrap support for B3L5R4 as seed ortholog is 99%.

Group of orthologs #400. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.knowlesi:214

Q5KL35              	100.00%		B3LCT1              	100.00%
Q5KN52              	13.82%		
Q5KE86              	13.55%		
Q5KED3              	12.23%		
Q5KGP3              	11.36%		
Q5KJN9              	10.31%		
Q5KC65              	10.28%		
Q5KN23              	8.53%		
Q5KH49              	6.91%		
Bootstrap support for Q5KL35 as seed ortholog is 100%.
Bootstrap support for B3LCT1 as seed ortholog is 100%.

Group of orthologs #401. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.knowlesi:134

P40909              	100.00%		B3L6W2              	100.00%
Bootstrap support for P40909 as seed ortholog is 100%.
Bootstrap support for B3L6W2 as seed ortholog is 100%.

Group of orthologs #402. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.knowlesi:213

Q5K772              	100.00%		B3LAY5              	100.00%
Bootstrap support for Q5K772 as seed ortholog is 100%.
Bootstrap support for B3LAY5 as seed ortholog is 100%.

Group of orthologs #403. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.knowlesi:213

Q5KJ16              	100.00%		B3LAR7              	100.00%
Bootstrap support for Q5KJ16 as seed ortholog is 100%.
Bootstrap support for B3LAR7 as seed ortholog is 100%.

Group of orthologs #404. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.knowlesi:213

Q5KLE7              	100.00%		B3LA43              	100.00%
Bootstrap support for Q5KLE7 as seed ortholog is 100%.
Bootstrap support for B3LA43 as seed ortholog is 100%.

Group of orthologs #405. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.knowlesi:80

Q5K810              	100.00%		B3L5Q4              	100.00%
Bootstrap support for Q5K810 as seed ortholog is 99%.
Bootstrap support for B3L5Q4 as seed ortholog is 99%.

Group of orthologs #406. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.knowlesi:211

Q5KJC9              	100.00%		B3L698              	100.00%
Bootstrap support for Q5KJC9 as seed ortholog is 100%.
Bootstrap support for B3L698 as seed ortholog is 100%.

Group of orthologs #407. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.knowlesi:96

Q5KG36              	100.00%		B3LA18              	100.00%
Bootstrap support for Q5KG36 as seed ortholog is 100%.
Bootstrap support for B3LA18 as seed ortholog is 99%.

Group of orthologs #408. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.knowlesi:5

Q5KLJ0              	100.00%		B3L8Z0              	100.00%
Bootstrap support for Q5KLJ0 as seed ortholog is 100%.
Bootstrap support for B3L8Z0 as seed ortholog is 75%.

Group of orthologs #409. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.knowlesi:210

P0CR50              	100.00%		B3LDC3              	100.00%
Bootstrap support for P0CR50 as seed ortholog is 100%.
Bootstrap support for B3LDC3 as seed ortholog is 100%.

Group of orthologs #410. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.knowlesi:209

Q5KLE9              	100.00%		B3L020              	100.00%
Bootstrap support for Q5KLE9 as seed ortholog is 100%.
Bootstrap support for B3L020 as seed ortholog is 100%.

Group of orthologs #411. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.knowlesi:209

Q5KKX9              	100.00%		B3LA78              	100.00%
Bootstrap support for Q5KKX9 as seed ortholog is 46%.
Alternative seed ortholog is Q5KNK4 (107 bits away from this cluster)
Bootstrap support for B3LA78 as seed ortholog is 100%.

Group of orthologs #412. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.knowlesi:208

Q5KFC5              	100.00%		B3L0W6              	100.00%
Bootstrap support for Q5KFC5 as seed ortholog is 100%.
Bootstrap support for B3L0W6 as seed ortholog is 100%.

Group of orthologs #413. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.knowlesi:208

Q5KBG0              	100.00%		B3L4U0              	100.00%
Bootstrap support for Q5KBG0 as seed ortholog is 90%.
Bootstrap support for B3L4U0 as seed ortholog is 100%.

Group of orthologs #414. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.knowlesi:208

Q5KPT7              	100.00%		B3L5X3              	100.00%
Bootstrap support for Q5KPT7 as seed ortholog is 100%.
Bootstrap support for B3L5X3 as seed ortholog is 100%.

Group of orthologs #415. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.knowlesi:207

Q5K6V3              	100.00%		B3L2J5              	100.00%
Bootstrap support for Q5K6V3 as seed ortholog is 100%.
Bootstrap support for B3L2J5 as seed ortholog is 100%.

Group of orthologs #416. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.knowlesi:207

Q5KBT6              	100.00%		B3L4Z6              	100.00%
Bootstrap support for Q5KBT6 as seed ortholog is 100%.
Bootstrap support for B3L4Z6 as seed ortholog is 100%.

Group of orthologs #417. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.knowlesi:207

P0CN42              	100.00%		B3LCC3              	100.00%
Bootstrap support for P0CN42 as seed ortholog is 100%.
Bootstrap support for B3LCC3 as seed ortholog is 100%.

Group of orthologs #418. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.knowlesi:207

Q5KG73              	100.00%		B3L632              	100.00%
Bootstrap support for Q5KG73 as seed ortholog is 99%.
Bootstrap support for B3L632 as seed ortholog is 100%.

Group of orthologs #419. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:106

Q5KGE7              	100.00%		B3L5Z0              	100.00%
Bootstrap support for Q5KGE7 as seed ortholog is 99%.
Bootstrap support for B3L5Z0 as seed ortholog is 100%.

Group of orthologs #420. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.knowlesi:206

P0CN48              	100.00%		B3L3L2              	100.00%
Bootstrap support for P0CN48 as seed ortholog is 100%.
Bootstrap support for B3L3L2 as seed ortholog is 100%.

Group of orthologs #421. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.knowlesi:206

Q5KII0              	100.00%		B3L212              	100.00%
Bootstrap support for Q5KII0 as seed ortholog is 100%.
Bootstrap support for B3L212 as seed ortholog is 100%.

Group of orthologs #422. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.knowlesi:101

P0CO42              	100.00%		B3L3M8              	100.00%
Bootstrap support for P0CO42 as seed ortholog is 100%.
Bootstrap support for B3L3M8 as seed ortholog is 99%.

Group of orthologs #423. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.knowlesi:205

Q5KCS1              	100.00%		B3LAD9              	100.00%
Bootstrap support for Q5KCS1 as seed ortholog is 100%.
Bootstrap support for B3LAD9 as seed ortholog is 100%.

Group of orthologs #424. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.knowlesi:205

Q5KIA5              	100.00%		B3LCP7              	100.00%
Bootstrap support for Q5KIA5 as seed ortholog is 100%.
Bootstrap support for B3LCP7 as seed ortholog is 100%.

Group of orthologs #425. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:39

P0CS16              	100.00%		B3LC83              	100.00%
Bootstrap support for P0CS16 as seed ortholog is 99%.
Bootstrap support for B3LC83 as seed ortholog is 95%.

Group of orthologs #426. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.knowlesi:204

Q5KG83              	100.00%		B3L593              	100.00%
Bootstrap support for Q5KG83 as seed ortholog is 100%.
Bootstrap support for B3L593 as seed ortholog is 100%.

Group of orthologs #427. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.knowlesi:204

Q5KIJ0              	100.00%		B3L734              	100.00%
Bootstrap support for Q5KIJ0 as seed ortholog is 100%.
Bootstrap support for B3L734 as seed ortholog is 100%.

Group of orthologs #428. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.knowlesi:204

Q5KKQ9              	100.00%		B3LCC1              	100.00%
Bootstrap support for Q5KKQ9 as seed ortholog is 100%.
Bootstrap support for B3LCC1 as seed ortholog is 100%.

Group of orthologs #429. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.knowlesi:203

Q5KLF5              	100.00%		B3KZD2              	100.00%
Bootstrap support for Q5KLF5 as seed ortholog is 100%.
Bootstrap support for B3KZD2 as seed ortholog is 100%.

Group of orthologs #430. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.knowlesi:203

Q5KL88              	100.00%		B3L5J3              	100.00%
Bootstrap support for Q5KL88 as seed ortholog is 88%.
Bootstrap support for B3L5J3 as seed ortholog is 100%.

Group of orthologs #431. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.knowlesi:201

Q5KGF9              	100.00%		B3L1B5              	100.00%
Bootstrap support for Q5KGF9 as seed ortholog is 100%.
Bootstrap support for B3L1B5 as seed ortholog is 100%.

Group of orthologs #432. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.knowlesi:201

Q5KQ04              	100.00%		B3L0B0              	100.00%
Bootstrap support for Q5KQ04 as seed ortholog is 100%.
Bootstrap support for B3L0B0 as seed ortholog is 100%.

Group of orthologs #433. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.knowlesi:201

Q5KJG7              	100.00%		B3L826              	100.00%
Bootstrap support for Q5KJG7 as seed ortholog is 100%.
Bootstrap support for B3L826 as seed ortholog is 100%.

Group of orthologs #434. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.knowlesi:201

Q5KQ20              	100.00%		B3LC08              	100.00%
Bootstrap support for Q5KQ20 as seed ortholog is 100%.
Bootstrap support for B3LC08 as seed ortholog is 100%.

Group of orthologs #435. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.knowlesi:200

P0CR56              	100.00%		B3L0G6              	100.00%
Bootstrap support for P0CR56 as seed ortholog is 100%.
Bootstrap support for B3L0G6 as seed ortholog is 100%.

Group of orthologs #436. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.knowlesi:200

Q5KA46              	100.00%		B3L567              	100.00%
Bootstrap support for Q5KA46 as seed ortholog is 100%.
Bootstrap support for B3L567 as seed ortholog is 100%.

Group of orthologs #437. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.knowlesi:200

Q5KNS1              	100.00%		B3LCL9              	100.00%
Bootstrap support for Q5KNS1 as seed ortholog is 100%.
Bootstrap support for B3LCL9 as seed ortholog is 100%.

Group of orthologs #438. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.knowlesi:56

Q5K7V8              	100.00%		B3LA59              	100.00%
                    	       		B3L0M2              	47.84%
                    	       		B3KZU8              	33.68%
Bootstrap support for Q5K7V8 as seed ortholog is 89%.
Bootstrap support for B3LA59 as seed ortholog is 97%.

Group of orthologs #439. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.knowlesi:60

Q5KMM0              	100.00%		B3L3Y1              	100.00%
Q5KML4              	55.88%		
Bootstrap support for Q5KMM0 as seed ortholog is 80%.
Bootstrap support for B3L3Y1 as seed ortholog is 99%.

Group of orthologs #440. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.knowlesi:41

Q5KGS1              	100.00%		B3LCV2              	100.00%
Bootstrap support for Q5KGS1 as seed ortholog is 74%.
Alternative seed ortholog is Q5KK41 (17 bits away from this cluster)
Bootstrap support for B3LCV2 as seed ortholog is 96%.

Group of orthologs #441. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.knowlesi:94

Q5KBK7              	100.00%		B3L2G9              	100.00%
Bootstrap support for Q5KBK7 as seed ortholog is 99%.
Bootstrap support for B3L2G9 as seed ortholog is 99%.

Group of orthologs #442. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.knowlesi:198

Q5KBW9              	100.00%		B3L7Q9              	100.00%
Bootstrap support for Q5KBW9 as seed ortholog is 100%.
Bootstrap support for B3L7Q9 as seed ortholog is 100%.

Group of orthologs #443. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.knowlesi:198

Q5KJ40              	100.00%		B3LAB0              	100.00%
Bootstrap support for Q5KJ40 as seed ortholog is 100%.
Bootstrap support for B3LAB0 as seed ortholog is 100%.

Group of orthologs #444. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.knowlesi:120

Q5KI85              	100.00%		B3L7I6              	100.00%
Bootstrap support for Q5KI85 as seed ortholog is 100%.
Bootstrap support for B3L7I6 as seed ortholog is 99%.

Group of orthologs #445. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.knowlesi:197

Q5KIV0              	100.00%		B3L838              	100.00%
Bootstrap support for Q5KIV0 as seed ortholog is 99%.
Bootstrap support for B3L838 as seed ortholog is 100%.

Group of orthologs #446. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.knowlesi:30

Q5KCH7              	100.00%		B3L0H8              	100.00%
                    	       		B3L068              	34.19%
                    	       		B3L8L4              	16.42%
                    	       		B3L498              	12.07%
Bootstrap support for Q5KCH7 as seed ortholog is 95%.
Bootstrap support for B3L0H8 as seed ortholog is 80%.

Group of orthologs #447. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.knowlesi:196

Q5KC90              	100.00%		B3L2C8              	100.00%
Bootstrap support for Q5KC90 as seed ortholog is 100%.
Bootstrap support for B3L2C8 as seed ortholog is 100%.

Group of orthologs #448. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.knowlesi:196

P0CP92              	100.00%		B3LAE7              	100.00%
Bootstrap support for P0CP92 as seed ortholog is 99%.
Bootstrap support for B3LAE7 as seed ortholog is 100%.

Group of orthologs #449. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.knowlesi:196

Q5K7P2              	100.00%		B3L9X2              	100.00%
Bootstrap support for Q5K7P2 as seed ortholog is 100%.
Bootstrap support for B3L9X2 as seed ortholog is 100%.

Group of orthologs #450. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:195

Q5KE64              	100.00%		B3L8H8              	100.00%
Q5KIK6              	52.61%		
Q5K7P0              	41.81%		
Bootstrap support for Q5KE64 as seed ortholog is 76%.
Bootstrap support for B3L8H8 as seed ortholog is 100%.

Group of orthologs #451. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:139

Q5K959              	100.00%		B3L8R4              	100.00%
Bootstrap support for Q5K959 as seed ortholog is 100%.
Bootstrap support for B3L8R4 as seed ortholog is 100%.

Group of orthologs #452. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.knowlesi:195

Q5KHI3              	100.00%		B3L542              	100.00%
Bootstrap support for Q5KHI3 as seed ortholog is 100%.
Bootstrap support for B3L542 as seed ortholog is 100%.

Group of orthologs #453. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.knowlesi:195

Q5KJH7              	100.00%		B3L6C4              	100.00%
Bootstrap support for Q5KJH7 as seed ortholog is 100%.
Bootstrap support for B3L6C4 as seed ortholog is 100%.

Group of orthologs #454. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.knowlesi:195

Q5KIN9              	100.00%		B3L7K8              	100.00%
Bootstrap support for Q5KIN9 as seed ortholog is 100%.
Bootstrap support for B3L7K8 as seed ortholog is 100%.

Group of orthologs #455. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:110

P0CP84              	100.00%		B3L5X6              	100.00%
Bootstrap support for P0CP84 as seed ortholog is 99%.
Bootstrap support for B3L5X6 as seed ortholog is 99%.

Group of orthologs #456. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.knowlesi:194

Q5KGZ9              	100.00%		B3L325              	100.00%
Bootstrap support for Q5KGZ9 as seed ortholog is 100%.
Bootstrap support for B3L325 as seed ortholog is 100%.

Group of orthologs #457. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.knowlesi:193

Q5K7I5              	100.00%		B3L3H1              	100.00%
Bootstrap support for Q5K7I5 as seed ortholog is 100%.
Bootstrap support for B3L3H1 as seed ortholog is 100%.

Group of orthologs #458. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.knowlesi:193

P0CP58              	100.00%		B3L4N0              	100.00%
Bootstrap support for P0CP58 as seed ortholog is 100%.
Bootstrap support for B3L4N0 as seed ortholog is 100%.

Group of orthologs #459. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.knowlesi:193

Q5K8H5              	100.00%		B3L4K2              	100.00%
Bootstrap support for Q5K8H5 as seed ortholog is 100%.
Bootstrap support for B3L4K2 as seed ortholog is 100%.

Group of orthologs #460. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.knowlesi:193

Q5KH50              	100.00%		B3KZF5              	100.00%
Bootstrap support for Q5KH50 as seed ortholog is 100%.
Bootstrap support for B3KZF5 as seed ortholog is 100%.

Group of orthologs #461. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.knowlesi:193

Q5KD50              	100.00%		B3LDF7              	100.00%
Bootstrap support for Q5KD50 as seed ortholog is 100%.
Bootstrap support for B3LDF7 as seed ortholog is 100%.

Group of orthologs #462. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.knowlesi:94

Q5K8Q5              	100.00%		B3L789              	100.00%
Bootstrap support for Q5K8Q5 as seed ortholog is 100%.
Bootstrap support for B3L789 as seed ortholog is 99%.

Group of orthologs #463. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.knowlesi:192

Q5KPQ4              	100.00%		B3KZA8              	100.00%
Bootstrap support for Q5KPQ4 as seed ortholog is 100%.
Bootstrap support for B3KZA8 as seed ortholog is 100%.

Group of orthologs #464. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.knowlesi:192

Q5KDJ7              	100.00%		B3LAS9              	100.00%
Bootstrap support for Q5KDJ7 as seed ortholog is 100%.
Bootstrap support for B3LAS9 as seed ortholog is 100%.

Group of orthologs #465. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.knowlesi:192

Q5KNB0              	100.00%		B3L928              	100.00%
Bootstrap support for Q5KNB0 as seed ortholog is 100%.
Bootstrap support for B3L928 as seed ortholog is 100%.

Group of orthologs #466. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.knowlesi:191

Q5KBH4              	100.00%		B3L7H0              	100.00%
Bootstrap support for Q5KBH4 as seed ortholog is 100%.
Bootstrap support for B3L7H0 as seed ortholog is 100%.

Group of orthologs #467. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.knowlesi:71

Q5KGB2              	100.00%		B3L4Y4              	100.00%
Bootstrap support for Q5KGB2 as seed ortholog is 98%.
Bootstrap support for B3L4Y4 as seed ortholog is 99%.

Group of orthologs #468. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.knowlesi:191

Q5KBR5              	100.00%		B3LBW4              	100.00%
Bootstrap support for Q5KBR5 as seed ortholog is 100%.
Bootstrap support for B3LBW4 as seed ortholog is 100%.

Group of orthologs #469. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.knowlesi:191

Q5KJ55              	100.00%		B3L9G8              	100.00%
Bootstrap support for Q5KJ55 as seed ortholog is 100%.
Bootstrap support for B3L9G8 as seed ortholog is 100%.

Group of orthologs #470. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:35

Q5KG21              	100.00%		B3LBN5              	100.00%
Q5KAW6              	9.75%		
Bootstrap support for Q5KG21 as seed ortholog is 96%.
Bootstrap support for B3LBN5 as seed ortholog is 96%.

Group of orthologs #471. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.knowlesi:190

Q5K9B2              	100.00%		B3L2T6              	100.00%
Bootstrap support for Q5K9B2 as seed ortholog is 100%.
Bootstrap support for B3L2T6 as seed ortholog is 100%.

Group of orthologs #472. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.knowlesi:7

P0CS36              	100.00%		B3LBG1              	100.00%
Bootstrap support for P0CS36 as seed ortholog is 100%.
Bootstrap support for B3LBG1 as seed ortholog is 85%.

Group of orthologs #473. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.knowlesi:190

Q5KIY3              	100.00%		B3L2P9              	100.00%
Bootstrap support for Q5KIY3 as seed ortholog is 73%.
Alternative seed ortholog is P0CP12 (103 bits away from this cluster)
Bootstrap support for B3L2P9 as seed ortholog is 100%.

Group of orthologs #474. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.knowlesi:190

Q5KGP1              	100.00%		B3L5V6              	100.00%
Bootstrap support for Q5KGP1 as seed ortholog is 100%.
Bootstrap support for B3L5V6 as seed ortholog is 100%.

Group of orthologs #475. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:69

Q5KFM4              	100.00%		B3L970              	100.00%
Bootstrap support for Q5KFM4 as seed ortholog is 99%.
Bootstrap support for B3L970 as seed ortholog is 92%.

Group of orthologs #476. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:31 P.knowlesi:59

P0CP78              	100.00%		B3L4V7              	100.00%
Bootstrap support for P0CP78 as seed ortholog is 88%.
Bootstrap support for B3L4V7 as seed ortholog is 98%.

Group of orthologs #477. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.knowlesi:189

P0CO46              	100.00%		B3L963              	100.00%
Bootstrap support for P0CO46 as seed ortholog is 100%.
Bootstrap support for B3L963 as seed ortholog is 100%.

Group of orthologs #478. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.knowlesi:189

Q5KLL4              	100.00%		B3KZ72              	100.00%
Bootstrap support for Q5KLL4 as seed ortholog is 100%.
Bootstrap support for B3KZ72 as seed ortholog is 100%.

Group of orthologs #479. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.knowlesi:189

Q5KP54              	100.00%		B3LAS6              	100.00%
Bootstrap support for Q5KP54 as seed ortholog is 98%.
Bootstrap support for B3LAS6 as seed ortholog is 100%.

Group of orthologs #480. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.knowlesi:113

Q5KMG1              	100.00%		B3L4H4              	100.00%
Q5K8R8              	35.16%		B3LB86              	100.00%
Bootstrap support for Q5KMG1 as seed ortholog is 100%.
Bootstrap support for B3L4H4 as seed ortholog is 99%.
Bootstrap support for B3LB86 as seed ortholog is 83%.

Group of orthologs #481. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.knowlesi:188

Q5KJV0              	100.00%		B3L9Q8              	100.00%
Q5KNW6              	7.83%		
Bootstrap support for Q5KJV0 as seed ortholog is 100%.
Bootstrap support for B3L9Q8 as seed ortholog is 100%.

Group of orthologs #482. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.knowlesi:105

Q5KAU2              	100.00%		B3L2A7              	100.00%
Bootstrap support for Q5KAU2 as seed ortholog is 100%.
Bootstrap support for B3L2A7 as seed ortholog is 100%.

Group of orthologs #483. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.knowlesi:188

Q5KH62              	100.00%		B3L5A7              	100.00%
Bootstrap support for Q5KH62 as seed ortholog is 100%.
Bootstrap support for B3L5A7 as seed ortholog is 100%.

Group of orthologs #484. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.knowlesi:16

Q5KNQ9              	100.00%		B3LAT3              	100.00%
Bootstrap support for Q5KNQ9 as seed ortholog is 97%.
Bootstrap support for B3LAT3 as seed ortholog is 65%.
Alternative seed ortholog is B3L480 (16 bits away from this cluster)

Group of orthologs #485. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.knowlesi:187

Q5K9Y4              	100.00%		B3L3Y9              	100.00%
Bootstrap support for Q5K9Y4 as seed ortholog is 100%.
Bootstrap support for B3L3Y9 as seed ortholog is 100%.

Group of orthologs #486. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.knowlesi:187

Q5K8A1              	100.00%		B3L7R7              	100.00%
Bootstrap support for Q5K8A1 as seed ortholog is 100%.
Bootstrap support for B3L7R7 as seed ortholog is 100%.

Group of orthologs #487. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.knowlesi:125

Q5KNI6              	100.00%		B3L4C5              	100.00%
Bootstrap support for Q5KNI6 as seed ortholog is 100%.
Bootstrap support for B3L4C5 as seed ortholog is 100%.

Group of orthologs #488. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.knowlesi:186

Q5KI12              	100.00%		B3L384              	100.00%
Bootstrap support for Q5KI12 as seed ortholog is 100%.
Bootstrap support for B3L384 as seed ortholog is 100%.

Group of orthologs #489. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.knowlesi:185

Q5K7Y1              	100.00%		B3L784              	100.00%
Bootstrap support for Q5K7Y1 as seed ortholog is 56%.
Alternative seed ortholog is Q5K7Z5 (9 bits away from this cluster)
Bootstrap support for B3L784 as seed ortholog is 100%.

Group of orthologs #490. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:83

Q5KH66              	100.00%		B3L1A5              	100.00%
Bootstrap support for Q5KH66 as seed ortholog is 98%.
Bootstrap support for B3L1A5 as seed ortholog is 97%.

Group of orthologs #491. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.knowlesi:101

Q5KL14              	100.00%		B3L1E6              	100.00%
Bootstrap support for Q5KL14 as seed ortholog is 99%.
Bootstrap support for B3L1E6 as seed ortholog is 98%.

Group of orthologs #492. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.knowlesi:185

Q5KGU5              	100.00%		B3LA23              	100.00%
Bootstrap support for Q5KGU5 as seed ortholog is 100%.
Bootstrap support for B3LA23 as seed ortholog is 100%.

Group of orthologs #493. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.knowlesi:185

Q5KK62              	100.00%		B3L830              	100.00%
Bootstrap support for Q5KK62 as seed ortholog is 100%.
Bootstrap support for B3L830 as seed ortholog is 100%.

Group of orthologs #494. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.knowlesi:184

Q5K7Z7              	100.00%		B3LBE4              	100.00%
Bootstrap support for Q5K7Z7 as seed ortholog is 100%.
Bootstrap support for B3LBE4 as seed ortholog is 100%.

Group of orthologs #495. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.knowlesi:184

Q5KP95              	100.00%		B3KZJ5              	100.00%
Bootstrap support for Q5KP95 as seed ortholog is 100%.
Bootstrap support for B3KZJ5 as seed ortholog is 100%.

Group of orthologs #496. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.knowlesi:57

Q5KD12              	100.00%		B3L239              	100.00%
                    	       		B3KZK4              	18.71%
Bootstrap support for Q5KD12 as seed ortholog is 100%.
Bootstrap support for B3L239 as seed ortholog is 99%.

Group of orthologs #497. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.knowlesi:183

Q5KM78              	100.00%		B3L7G9              	100.00%
Q5KCL1              	13.85%		
Bootstrap support for Q5KM78 as seed ortholog is 100%.
Bootstrap support for B3L7G9 as seed ortholog is 100%.

Group of orthologs #498. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:183

P0CQ02              	100.00%		B3LA90              	100.00%
Bootstrap support for P0CQ02 as seed ortholog is 93%.
Bootstrap support for B3LA90 as seed ortholog is 100%.

Group of orthologs #499. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.knowlesi:183

Q5KNH2              	100.00%		B3L435              	100.00%
Bootstrap support for Q5KNH2 as seed ortholog is 100%.
Bootstrap support for B3L435 as seed ortholog is 100%.

Group of orthologs #500. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.knowlesi:182

P0CM34              	100.00%		B3L367              	100.00%
Bootstrap support for P0CM34 as seed ortholog is 100%.
Bootstrap support for B3L367 as seed ortholog is 100%.

Group of orthologs #501. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.knowlesi:182

Q5KDC2              	100.00%		B3L5Y9              	100.00%
Bootstrap support for Q5KDC2 as seed ortholog is 100%.
Bootstrap support for B3L5Y9 as seed ortholog is 100%.

Group of orthologs #502. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.knowlesi:181

Q5KIC5              	100.00%		B3L8I5              	100.00%
Bootstrap support for Q5KIC5 as seed ortholog is 100%.
Bootstrap support for B3L8I5 as seed ortholog is 100%.

Group of orthologs #503. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.knowlesi:181

Q5KND4              	100.00%		B3LAL0              	100.00%
Bootstrap support for Q5KND4 as seed ortholog is 100%.
Bootstrap support for B3LAL0 as seed ortholog is 100%.

Group of orthologs #504. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:180

Q5K8Y6              	100.00%		B3L635              	100.00%
Bootstrap support for Q5K8Y6 as seed ortholog is 100%.
Bootstrap support for B3L635 as seed ortholog is 100%.

Group of orthologs #505. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:180

Q5KCE0              	100.00%		B3L9J5              	100.00%
Bootstrap support for Q5KCE0 as seed ortholog is 100%.
Bootstrap support for B3L9J5 as seed ortholog is 100%.

Group of orthologs #506. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:180

Q5KLQ5              	100.00%		B3L4R3              	100.00%
Bootstrap support for Q5KLQ5 as seed ortholog is 100%.
Bootstrap support for B3L4R3 as seed ortholog is 100%.

Group of orthologs #507. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:180

Q5KK40              	100.00%		B3L6W6              	100.00%
Bootstrap support for Q5KK40 as seed ortholog is 100%.
Bootstrap support for B3L6W6 as seed ortholog is 100%.

Group of orthologs #508. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:180

Q5KMA0              	100.00%		B3L7M5              	100.00%
Bootstrap support for Q5KMA0 as seed ortholog is 100%.
Bootstrap support for B3L7M5 as seed ortholog is 100%.

Group of orthologs #509. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.knowlesi:180

Q5KM68              	100.00%		B3LC68              	100.00%
Bootstrap support for Q5KM68 as seed ortholog is 100%.
Bootstrap support for B3LC68 as seed ortholog is 100%.

Group of orthologs #510. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.knowlesi:96

Q5KPI4              	100.00%		B3L673              	100.00%
Q5K938              	13.99%		
Bootstrap support for Q5KPI4 as seed ortholog is 100%.
Bootstrap support for B3L673 as seed ortholog is 99%.

Group of orthologs #511. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.knowlesi:179

Q5KIZ3              	100.00%		B3L0E1              	100.00%
Bootstrap support for Q5KIZ3 as seed ortholog is 100%.
Bootstrap support for B3L0E1 as seed ortholog is 100%.

Group of orthologs #512. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.knowlesi:179

Q5KMY7              	100.00%		B3L7Y4              	100.00%
Bootstrap support for Q5KMY7 as seed ortholog is 100%.
Bootstrap support for B3L7Y4 as seed ortholog is 100%.

Group of orthologs #513. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.knowlesi:179

Q5KQ70              	100.00%		B3L904              	100.00%
Bootstrap support for Q5KQ70 as seed ortholog is 100%.
Bootstrap support for B3L904 as seed ortholog is 100%.

Group of orthologs #514. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.knowlesi:178

Q5K8H7              	100.00%		B3L984              	100.00%
Bootstrap support for Q5K8H7 as seed ortholog is 100%.
Bootstrap support for B3L984 as seed ortholog is 100%.

Group of orthologs #515. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.knowlesi:178

Q5KIM1              	100.00%		B3L2F7              	100.00%
Bootstrap support for Q5KIM1 as seed ortholog is 100%.
Bootstrap support for B3L2F7 as seed ortholog is 100%.

Group of orthologs #516. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.knowlesi:178

Q5KHT0              	100.00%		B3LB29              	100.00%
Bootstrap support for Q5KHT0 as seed ortholog is 100%.
Bootstrap support for B3LB29 as seed ortholog is 100%.

Group of orthologs #517. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.knowlesi:177

P0CS80              	100.00%		B3L580              	100.00%
Bootstrap support for P0CS80 as seed ortholog is 100%.
Bootstrap support for B3L580 as seed ortholog is 100%.

Group of orthologs #518. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.knowlesi:69

Q5KIG6              	100.00%		B3L5N8              	100.00%
Bootstrap support for Q5KIG6 as seed ortholog is 98%.
Bootstrap support for B3L5N8 as seed ortholog is 95%.

Group of orthologs #519. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.knowlesi:176

P0CN56              	100.00%		B3L7T1              	100.00%
Bootstrap support for P0CN56 as seed ortholog is 100%.
Bootstrap support for B3L7T1 as seed ortholog is 100%.

Group of orthologs #520. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.knowlesi:176

P0CN94              	100.00%		B3L895              	100.00%
Bootstrap support for P0CN94 as seed ortholog is 100%.
Bootstrap support for B3L895 as seed ortholog is 100%.

Group of orthologs #521. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.knowlesi:176

Q5KGR6              	100.00%		B3L6V5              	100.00%
Bootstrap support for Q5KGR6 as seed ortholog is 85%.
Bootstrap support for B3L6V5 as seed ortholog is 100%.

Group of orthologs #522. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.knowlesi:175

Q5KAI5              	100.00%		B3L8I6              	100.00%
Bootstrap support for Q5KAI5 as seed ortholog is 100%.
Bootstrap support for B3L8I6 as seed ortholog is 100%.

Group of orthologs #523. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.knowlesi:174

Q5K979              	100.00%		B3L443              	100.00%
Bootstrap support for Q5K979 as seed ortholog is 100%.
Bootstrap support for B3L443 as seed ortholog is 100%.

Group of orthologs #524. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.knowlesi:174

Q5KEH0              	100.00%		B3L376              	100.00%
Bootstrap support for Q5KEH0 as seed ortholog is 100%.
Bootstrap support for B3L376 as seed ortholog is 100%.

Group of orthologs #525. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.knowlesi:173

P0CO00              	100.00%		B3L3Z2              	100.00%
Bootstrap support for P0CO00 as seed ortholog is 100%.
Bootstrap support for B3L3Z2 as seed ortholog is 100%.

Group of orthologs #526. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.knowlesi:173

Q5KBP2              	100.00%		B3L2G0              	100.00%
Bootstrap support for Q5KBP2 as seed ortholog is 100%.
Bootstrap support for B3L2G0 as seed ortholog is 100%.

Group of orthologs #527. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.knowlesi:173

Q5KF53              	100.00%		B3L1U4              	100.00%
Bootstrap support for Q5KF53 as seed ortholog is 100%.
Bootstrap support for B3L1U4 as seed ortholog is 100%.

Group of orthologs #528. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.knowlesi:173

Q5KCI8              	100.00%		B3L5N9              	100.00%
Bootstrap support for Q5KCI8 as seed ortholog is 100%.
Bootstrap support for B3L5N9 as seed ortholog is 100%.

Group of orthologs #529. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.knowlesi:172

Q5KNF9              	100.00%		B3LCI8              	100.00%
Bootstrap support for Q5KNF9 as seed ortholog is 100%.
Bootstrap support for B3LCI8 as seed ortholog is 100%.

Group of orthologs #530. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.knowlesi:171

Q5KCX8              	100.00%		B3LCD7              	100.00%
Bootstrap support for Q5KCX8 as seed ortholog is 100%.
Bootstrap support for B3LCD7 as seed ortholog is 100%.

Group of orthologs #531. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.knowlesi:170

P0CN98              	100.00%		B3L7N0              	100.00%
Bootstrap support for P0CN98 as seed ortholog is 100%.
Bootstrap support for B3L7N0 as seed ortholog is 100%.

Group of orthologs #532. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.knowlesi:170

Q5KH61              	100.00%		B3L1J9              	100.00%
Bootstrap support for Q5KH61 as seed ortholog is 100%.
Bootstrap support for B3L1J9 as seed ortholog is 100%.

Group of orthologs #533. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.knowlesi:169

Q5KIB2              	100.00%		B3L291              	100.00%
Bootstrap support for Q5KIB2 as seed ortholog is 100%.
Bootstrap support for B3L291 as seed ortholog is 100%.

Group of orthologs #534. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.knowlesi:169

Q5KAX8              	100.00%		B3L9F2              	100.00%
Bootstrap support for Q5KAX8 as seed ortholog is 100%.
Bootstrap support for B3L9F2 as seed ortholog is 100%.

Group of orthologs #535. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.knowlesi:169

Q5KQ17              	100.00%		B3L032              	100.00%
Bootstrap support for Q5KQ17 as seed ortholog is 100%.
Bootstrap support for B3L032 as seed ortholog is 100%.

Group of orthologs #536. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.knowlesi:168

Q5K756              	100.00%		B3LB10              	100.00%
Q5KM34              	19.42%		
Bootstrap support for Q5K756 as seed ortholog is 99%.
Bootstrap support for B3LB10 as seed ortholog is 100%.

Group of orthologs #537. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.knowlesi:168

P0CO44              	100.00%		B3L7H3              	100.00%
Bootstrap support for P0CO44 as seed ortholog is 100%.
Bootstrap support for B3L7H3 as seed ortholog is 100%.

Group of orthologs #538. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.knowlesi:168

Q5KE88              	100.00%		B3L645              	100.00%
Bootstrap support for Q5KE88 as seed ortholog is 88%.
Bootstrap support for B3L645 as seed ortholog is 100%.

Group of orthologs #539. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.knowlesi:68

Q5KIL7              	100.00%		B3KZZ3              	100.00%
Bootstrap support for Q5KIL7 as seed ortholog is 100%.
Bootstrap support for B3KZZ3 as seed ortholog is 98%.

Group of orthologs #540. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:166

Q5KLQ4              	100.00%		B3LC44              	100.00%
Q5KLR2              	54.21%		
Bootstrap support for Q5KLQ4 as seed ortholog is 99%.
Bootstrap support for B3LC44 as seed ortholog is 100%.

Group of orthologs #541. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.knowlesi:97

Q5KBA9              	100.00%		B3L410              	100.00%
Bootstrap support for Q5KBA9 as seed ortholog is 100%.
Bootstrap support for B3L410 as seed ortholog is 100%.

Group of orthologs #542. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.knowlesi:166

Q5KD79              	100.00%		B3L2B8              	100.00%
Bootstrap support for Q5KD79 as seed ortholog is 100%.
Bootstrap support for B3L2B8 as seed ortholog is 100%.

Group of orthologs #543. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.knowlesi:165

P0CR70              	100.00%		B3L7U7              	100.00%
Bootstrap support for P0CR70 as seed ortholog is 100%.
Bootstrap support for B3L7U7 as seed ortholog is 100%.

Group of orthologs #544. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.knowlesi:165

Q5KFR3              	100.00%		B3L2P4              	100.00%
Bootstrap support for Q5KFR3 as seed ortholog is 100%.
Bootstrap support for B3L2P4 as seed ortholog is 100%.

Group of orthologs #545. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.knowlesi:165

Q5KBN7              	100.00%		B3LBS0              	100.00%
Bootstrap support for Q5KBN7 as seed ortholog is 100%.
Bootstrap support for B3LBS0 as seed ortholog is 100%.

Group of orthologs #546. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.knowlesi:165

Q5KHR9              	100.00%		B3L8G0              	100.00%
Bootstrap support for Q5KHR9 as seed ortholog is 100%.
Bootstrap support for B3L8G0 as seed ortholog is 100%.

Group of orthologs #547. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.knowlesi:164

P0CM58              	100.00%		B3L778              	100.00%
Bootstrap support for P0CM58 as seed ortholog is 100%.
Bootstrap support for B3L778 as seed ortholog is 100%.

Group of orthologs #548. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.knowlesi:83

P0CM54              	100.00%		B3L9Q0              	100.00%
Bootstrap support for P0CM54 as seed ortholog is 100%.
Bootstrap support for B3L9Q0 as seed ortholog is 99%.

Group of orthologs #549. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.knowlesi:164

Q5KK13              	100.00%		B3LDF8              	100.00%
Bootstrap support for Q5KK13 as seed ortholog is 100%.
Bootstrap support for B3LDF8 as seed ortholog is 100%.

Group of orthologs #550. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.knowlesi:163

Q5KAH0              	100.00%		B3L3C1              	100.00%
Bootstrap support for Q5KAH0 as seed ortholog is 100%.
Bootstrap support for B3L3C1 as seed ortholog is 100%.

Group of orthologs #551. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.knowlesi:163

Q5KFP2              	100.00%		B3L684              	100.00%
Bootstrap support for Q5KFP2 as seed ortholog is 100%.
Bootstrap support for B3L684 as seed ortholog is 100%.

Group of orthologs #552. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.knowlesi:163

Q5KGC9              	100.00%		B3L918              	100.00%
Bootstrap support for Q5KGC9 as seed ortholog is 100%.
Bootstrap support for B3L918 as seed ortholog is 100%.

Group of orthologs #553. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.knowlesi:163

Q5KE92              	100.00%		B3LCI0              	100.00%
Bootstrap support for Q5KE92 as seed ortholog is 100%.
Bootstrap support for B3LCI0 as seed ortholog is 100%.

Group of orthologs #554. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.knowlesi:163

Q5KL66              	100.00%		B3L8I0              	100.00%
Bootstrap support for Q5KL66 as seed ortholog is 100%.
Bootstrap support for B3L8I0 as seed ortholog is 100%.

Group of orthologs #555. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:11 P.knowlesi:35

Q5K7V1              	100.00%		B3KZK6              	100.00%
Bootstrap support for Q5K7V1 as seed ortholog is 80%.
Bootstrap support for B3KZK6 as seed ortholog is 80%.

Group of orthologs #556. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.knowlesi:161

Q5KI91              	100.00%		B3L4P4              	100.00%
Bootstrap support for Q5KI91 as seed ortholog is 100%.
Bootstrap support for B3L4P4 as seed ortholog is 100%.

Group of orthologs #557. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.knowlesi:161

Q5KI73              	100.00%		B3L610              	100.00%
Bootstrap support for Q5KI73 as seed ortholog is 100%.
Bootstrap support for B3L610 as seed ortholog is 100%.

Group of orthologs #558. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.knowlesi:161

Q5KEX8              	100.00%		B3LBZ3              	100.00%
Bootstrap support for Q5KEX8 as seed ortholog is 100%.
Bootstrap support for B3LBZ3 as seed ortholog is 100%.

Group of orthologs #559. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.knowlesi:160

Q5K8R7              	100.00%		B3L672              	100.00%
Bootstrap support for Q5K8R7 as seed ortholog is 100%.
Bootstrap support for B3L672 as seed ortholog is 100%.

Group of orthologs #560. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.knowlesi:160

Q5KGY0              	100.00%		B3L5D5              	100.00%
Bootstrap support for Q5KGY0 as seed ortholog is 100%.
Bootstrap support for B3L5D5 as seed ortholog is 100%.

Group of orthologs #561. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.knowlesi:160

Q5KFZ1              	100.00%		B3L9A7              	100.00%
Bootstrap support for Q5KFZ1 as seed ortholog is 100%.
Bootstrap support for B3L9A7 as seed ortholog is 100%.

Group of orthologs #562. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.knowlesi:159

Q5KF27              	100.00%		B3LAY2              	100.00%
Bootstrap support for Q5KF27 as seed ortholog is 100%.
Bootstrap support for B3LAY2 as seed ortholog is 100%.

Group of orthologs #563. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.knowlesi:158

P0CS32              	100.00%		B3L059              	100.00%
Bootstrap support for P0CS32 as seed ortholog is 99%.
Bootstrap support for B3L059 as seed ortholog is 100%.

Group of orthologs #564. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5K9Z8              	100.00%		B3KZC5              	100.00%
Bootstrap support for Q5K9Z8 as seed ortholog is 100%.
Bootstrap support for B3KZC5 as seed ortholog is 100%.

Group of orthologs #565. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

P0CQ50              	100.00%		B3L4F6              	100.00%
Bootstrap support for P0CQ50 as seed ortholog is 100%.
Bootstrap support for B3L4F6 as seed ortholog is 100%.

Group of orthologs #566. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5KCY7              	100.00%		B3KZ34              	100.00%
Bootstrap support for Q5KCY7 as seed ortholog is 100%.
Bootstrap support for B3KZ34 as seed ortholog is 100%.

Group of orthologs #567. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:5

Q5K7Y2              	100.00%		B3L702              	100.00%
Bootstrap support for Q5K7Y2 as seed ortholog is 100%.
Bootstrap support for B3L702 as seed ortholog is 96%.

Group of orthologs #568. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5K9M5              	100.00%		B3L5W9              	100.00%
Bootstrap support for Q5K9M5 as seed ortholog is 100%.
Bootstrap support for B3L5W9 as seed ortholog is 100%.

Group of orthologs #569. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.knowlesi:75

Q5KEU0              	100.00%		B3L2M7              	100.00%
Bootstrap support for Q5KEU0 as seed ortholog is 83%.
Bootstrap support for B3L2M7 as seed ortholog is 99%.

Group of orthologs #570. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5KES4              	100.00%		B3L549              	100.00%
Bootstrap support for Q5KES4 as seed ortholog is 100%.
Bootstrap support for B3L549 as seed ortholog is 100%.

Group of orthologs #571. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5K9K4              	100.00%		B3LD90              	100.00%
Bootstrap support for Q5K9K4 as seed ortholog is 100%.
Bootstrap support for B3LD90 as seed ortholog is 100%.

Group of orthologs #572. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5KPX1              	100.00%		B3L0V2              	100.00%
Bootstrap support for Q5KPX1 as seed ortholog is 100%.
Bootstrap support for B3L0V2 as seed ortholog is 100%.

Group of orthologs #573. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.knowlesi:158

Q5KKH3              	100.00%		B3L6K9              	100.00%
Bootstrap support for Q5KKH3 as seed ortholog is 100%.
Bootstrap support for B3L6K9 as seed ortholog is 100%.

Group of orthologs #574. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.knowlesi:8

P0CO02              	100.00%		B3L4K3              	100.00%
Bootstrap support for P0CO02 as seed ortholog is 100%.
Bootstrap support for B3L4K3 as seed ortholog is 55%.
Alternative seed ortholog is B3LC36 (8 bits away from this cluster)

Group of orthologs #575. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.knowlesi:157

Q5KHX7              	100.00%		B3L1I5              	100.00%
Bootstrap support for Q5KHX7 as seed ortholog is 100%.
Bootstrap support for B3L1I5 as seed ortholog is 100%.

Group of orthologs #576. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.knowlesi:157

Q5KBG5              	100.00%		B3LBE7              	100.00%
Bootstrap support for Q5KBG5 as seed ortholog is 100%.
Bootstrap support for B3LBE7 as seed ortholog is 100%.

Group of orthologs #577. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.knowlesi:157

Q5KKR0              	100.00%		B3LB55              	100.00%
Bootstrap support for Q5KKR0 as seed ortholog is 100%.
Bootstrap support for B3LB55 as seed ortholog is 100%.

Group of orthologs #578. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.knowlesi:156

Q5K777              	100.00%		B3KZA4              	100.00%
Bootstrap support for Q5K777 as seed ortholog is 100%.
Bootstrap support for B3KZA4 as seed ortholog is 100%.

Group of orthologs #579. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.knowlesi:156

Q5KJC6              	100.00%		B3LAK3              	100.00%
Bootstrap support for Q5KJC6 as seed ortholog is 56%.
Alternative seed ortholog is Q5KNA1 (40 bits away from this cluster)
Bootstrap support for B3LAK3 as seed ortholog is 100%.

Group of orthologs #580. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.knowlesi:156

Q5KLL5              	100.00%		B3LA48              	100.00%
Bootstrap support for Q5KLL5 as seed ortholog is 100%.
Bootstrap support for B3LA48 as seed ortholog is 100%.

Group of orthologs #581. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.knowlesi:155

Q5KD80              	100.00%		B3L441              	100.00%
Bootstrap support for Q5KD80 as seed ortholog is 100%.
Bootstrap support for B3L441 as seed ortholog is 100%.

Group of orthologs #582. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.knowlesi:93

Q5KCI0              	100.00%		B3L6K8              	100.00%
Bootstrap support for Q5KCI0 as seed ortholog is 100%.
Bootstrap support for B3L6K8 as seed ortholog is 99%.

Group of orthologs #583. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.knowlesi:155

Q5KHA2              	100.00%		B3L3P6              	100.00%
Bootstrap support for Q5KHA2 as seed ortholog is 100%.
Bootstrap support for B3L3P6 as seed ortholog is 100%.

Group of orthologs #584. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.knowlesi:155

Q5KAD8              	100.00%		B3LDC2              	100.00%
Bootstrap support for Q5KAD8 as seed ortholog is 100%.
Bootstrap support for B3LDC2 as seed ortholog is 100%.

Group of orthologs #585. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.knowlesi:155

Q5KHA1              	100.00%		B3LBS5              	100.00%
Bootstrap support for Q5KHA1 as seed ortholog is 100%.
Bootstrap support for B3LBS5 as seed ortholog is 100%.

Group of orthologs #586. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.knowlesi:154

Q5KEB3              	100.00%		B3LA28              	100.00%
                    	       		B3LCE5              	25.31%
Bootstrap support for Q5KEB3 as seed ortholog is 100%.
Bootstrap support for B3LA28 as seed ortholog is 100%.

Group of orthologs #587. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.knowlesi:54

Q5KJW2              	100.00%		B3L761              	100.00%
Bootstrap support for Q5KJW2 as seed ortholog is 80%.
Bootstrap support for B3L761 as seed ortholog is 99%.

Group of orthologs #588. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:154

Q5KEX2              	100.00%		B3LBY0              	100.00%
Bootstrap support for Q5KEX2 as seed ortholog is 89%.
Bootstrap support for B3LBY0 as seed ortholog is 100%.

Group of orthologs #589. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.knowlesi:152

Q5KDP4              	100.00%		B3L947              	100.00%
Bootstrap support for Q5KDP4 as seed ortholog is 100%.
Bootstrap support for B3L947 as seed ortholog is 100%.

Group of orthologs #590. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.knowlesi:152

Q5KN51              	100.00%		B3L6X3              	100.00%
Bootstrap support for Q5KN51 as seed ortholog is 100%.
Bootstrap support for B3L6X3 as seed ortholog is 100%.

Group of orthologs #591. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.knowlesi:151

P0CQ52              	100.00%		B3L543              	100.00%
Bootstrap support for P0CQ52 as seed ortholog is 100%.
Bootstrap support for B3L543 as seed ortholog is 100%.

Group of orthologs #592. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.knowlesi:151

Q5K6Z0              	100.00%		B3L879              	100.00%
Bootstrap support for Q5K6Z0 as seed ortholog is 100%.
Bootstrap support for B3L879 as seed ortholog is 100%.

Group of orthologs #593. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.knowlesi:151

Q5KNC5              	100.00%		B3L6Q7              	100.00%
Bootstrap support for Q5KNC5 as seed ortholog is 100%.
Bootstrap support for B3L6Q7 as seed ortholog is 100%.

Group of orthologs #594. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.knowlesi:151

Q5KLH8              	100.00%		B3L9M4              	100.00%
Bootstrap support for Q5KLH8 as seed ortholog is 100%.
Bootstrap support for B3L9M4 as seed ortholog is 100%.

Group of orthologs #595. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.knowlesi:151

Q5KPW7              	100.00%		B3LB59              	100.00%
Bootstrap support for Q5KPW7 as seed ortholog is 100%.
Bootstrap support for B3LB59 as seed ortholog is 100%.

Group of orthologs #596. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.knowlesi:150

P0CN10              	100.00%		B3LBI7              	100.00%
Bootstrap support for P0CN10 as seed ortholog is 100%.
Bootstrap support for B3LBI7 as seed ortholog is 100%.

Group of orthologs #597. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.knowlesi:150

Q5KPY2              	100.00%		B3L2P6              	100.00%
Bootstrap support for Q5KPY2 as seed ortholog is 81%.
Bootstrap support for B3L2P6 as seed ortholog is 100%.

Group of orthologs #598. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.knowlesi:149

Q5KFR2              	100.00%		B3L4D9              	100.00%
Bootstrap support for Q5KFR2 as seed ortholog is 100%.
Bootstrap support for B3L4D9 as seed ortholog is 100%.

Group of orthologs #599. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.knowlesi:148

Q5KGU0              	100.00%		B3L4I9              	100.00%
Q5KEK8              	7.44%		
Bootstrap support for Q5KGU0 as seed ortholog is 100%.
Bootstrap support for B3L4I9 as seed ortholog is 100%.

Group of orthologs #600. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.knowlesi:148

Q5K972              	100.00%		B3LAX8              	100.00%
Bootstrap support for Q5K972 as seed ortholog is 100%.
Bootstrap support for B3LAX8 as seed ortholog is 100%.

Group of orthologs #601. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.knowlesi:148

Q5KGZ8              	100.00%		B3L5G8              	100.00%
Bootstrap support for Q5KGZ8 as seed ortholog is 100%.
Bootstrap support for B3L5G8 as seed ortholog is 100%.

Group of orthologs #602. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.knowlesi:148

Q5K8D6              	100.00%		B3LDF1              	100.00%
Bootstrap support for Q5K8D6 as seed ortholog is 100%.
Bootstrap support for B3LDF1 as seed ortholog is 100%.

Group of orthologs #603. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.knowlesi:147

Q5KLJ6              	100.00%		B3L470              	100.00%
Bootstrap support for Q5KLJ6 as seed ortholog is 100%.
Bootstrap support for B3L470 as seed ortholog is 100%.

Group of orthologs #604. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.knowlesi:146

Q5KG23              	100.00%		B3L3G4              	100.00%
Bootstrap support for Q5KG23 as seed ortholog is 100%.
Bootstrap support for B3L3G4 as seed ortholog is 100%.

Group of orthologs #605. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.knowlesi:146

Q5KP63              	100.00%		B3L8K9              	100.00%
Bootstrap support for Q5KP63 as seed ortholog is 100%.
Bootstrap support for B3L8K9 as seed ortholog is 100%.

Group of orthologs #606. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.knowlesi:145

Q5KIH4              	100.00%		B3LD68              	100.00%
Bootstrap support for Q5KIH4 as seed ortholog is 100%.
Bootstrap support for B3LD68 as seed ortholog is 100%.

Group of orthologs #607. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.knowlesi:144

Q5KKK5              	100.00%		B3L1J7              	100.00%
Bootstrap support for Q5KKK5 as seed ortholog is 100%.
Bootstrap support for B3L1J7 as seed ortholog is 100%.

Group of orthologs #608. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.knowlesi:144

Q5KM54              	100.00%		B3L2I9              	100.00%
Bootstrap support for Q5KM54 as seed ortholog is 100%.
Bootstrap support for B3L2I9 as seed ortholog is 100%.

Group of orthologs #609. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.knowlesi:144

Q5KKS4              	100.00%		B3L6X6              	100.00%
Bootstrap support for Q5KKS4 as seed ortholog is 100%.
Bootstrap support for B3L6X6 as seed ortholog is 100%.

Group of orthologs #610. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.knowlesi:144

Q5KK51              	100.00%		B3LC53              	100.00%
Bootstrap support for Q5KK51 as seed ortholog is 100%.
Bootstrap support for B3LC53 as seed ortholog is 100%.

Group of orthologs #611. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.knowlesi:143

P0CN18              	100.00%		B3LAM7              	100.00%
Bootstrap support for P0CN18 as seed ortholog is 100%.
Bootstrap support for B3LAM7 as seed ortholog is 100%.

Group of orthologs #612. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.knowlesi:143

P0CS08              	100.00%		B3LBX3              	100.00%
Bootstrap support for P0CS08 as seed ortholog is 100%.
Bootstrap support for B3LBX3 as seed ortholog is 100%.

Group of orthologs #613. Best score 142 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.knowlesi:142

Q5KCC5              	100.00%		B3L0V4              	100.00%
Q5K6S8              	87.63%		
Q5KA16              	86.59%		
Q5KMZ2              	27.13%		
Q5KC79              	20.37%		
Q5KGQ4              	20.06%		
Q5K8W0              	19.75%		
Q5KD28              	18.40%		
Q5KKB7              	17.88%		
Q5K7G0              	16.22%		
Q5KM76              	11.95%		
Q5K996              	11.75%		
Q5K7D3              	11.64%		
Q5KC74              	11.12%		
Q5KKF1              	10.71%		
Q5KE75              	10.19%		
Q5KCB9              	8.84%		
Q5KGN5              	8.63%		
Q5KHG7              	8.42%		
Q5KLH9              	7.90%		
Q5KE69              	7.38%		
Q5KKT2              	6.55%		
Q5KLB7              	5.20%		
Bootstrap support for Q5KCC5 as seed ortholog is 80%.
Bootstrap support for B3L0V4 as seed ortholog is 100%.

Group of orthologs #614. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.knowlesi:141

Q5K745              	100.00%		B3LC99              	100.00%
Q5KDB7              	6.18%		
Bootstrap support for Q5K745 as seed ortholog is 100%.
Bootstrap support for B3LC99 as seed ortholog is 100%.

Group of orthologs #615. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.knowlesi:141

Q5KPS5              	100.00%		B3LAU3              	100.00%
Bootstrap support for Q5KPS5 as seed ortholog is 100%.
Bootstrap support for B3LAU3 as seed ortholog is 100%.

Group of orthologs #616. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.knowlesi:140

Q5K7J3              	100.00%		B3L349              	100.00%
Bootstrap support for Q5K7J3 as seed ortholog is 100%.
Bootstrap support for B3L349 as seed ortholog is 100%.

Group of orthologs #617. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.knowlesi:139

Q5KA36              	100.00%		B3L4X8              	100.00%
Bootstrap support for Q5KA36 as seed ortholog is 100%.
Bootstrap support for B3L4X8 as seed ortholog is 100%.

Group of orthologs #618. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.knowlesi:139

Q5K7W8              	100.00%		B3LC67              	100.00%
Bootstrap support for Q5K7W8 as seed ortholog is 100%.
Bootstrap support for B3LC67 as seed ortholog is 100%.

Group of orthologs #619. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.knowlesi:139

Q5KK16              	100.00%		B3L191              	100.00%
Bootstrap support for Q5KK16 as seed ortholog is 100%.
Bootstrap support for B3L191 as seed ortholog is 100%.

Group of orthologs #620. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.knowlesi:139

Q5KPE9              	100.00%		B3L341              	100.00%
Bootstrap support for Q5KPE9 as seed ortholog is 100%.
Bootstrap support for B3L341 as seed ortholog is 100%.

Group of orthologs #621. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.knowlesi:138

P0CS28              	100.00%		B3L3R9              	100.00%
Bootstrap support for P0CS28 as seed ortholog is 95%.
Bootstrap support for B3L3R9 as seed ortholog is 100%.

Group of orthologs #622. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.knowlesi:138

Q5KPZ5              	100.00%		B3LA40              	100.00%
Bootstrap support for Q5KPZ5 as seed ortholog is 100%.
Bootstrap support for B3LA40 as seed ortholog is 100%.

Group of orthologs #623. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.knowlesi:137

Q5K974              	100.00%		B3KZA9              	100.00%
Bootstrap support for Q5K974 as seed ortholog is 100%.
Bootstrap support for B3KZA9 as seed ortholog is 100%.

Group of orthologs #624. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.knowlesi:137

Q5K8G1              	100.00%		B3L5K2              	100.00%
Bootstrap support for Q5K8G1 as seed ortholog is 100%.
Bootstrap support for B3L5K2 as seed ortholog is 100%.

Group of orthologs #625. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.knowlesi:137

Q5KLE6              	100.00%		B3L994              	100.00%
Bootstrap support for Q5KLE6 as seed ortholog is 100%.
Bootstrap support for B3L994 as seed ortholog is 100%.

Group of orthologs #626. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

P0CQ64              	100.00%		B3L9X9              	100.00%
Bootstrap support for P0CQ64 as seed ortholog is 100%.
Bootstrap support for B3L9X9 as seed ortholog is 100%.

Group of orthologs #627. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KCD2              	100.00%		B3L4S8              	100.00%
Bootstrap support for Q5KCD2 as seed ortholog is 100%.
Bootstrap support for B3L4S8 as seed ortholog is 100%.

Group of orthologs #628. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KEA3              	100.00%		B3L3I1              	100.00%
Bootstrap support for Q5KEA3 as seed ortholog is 100%.
Bootstrap support for B3L3I1 as seed ortholog is 100%.

Group of orthologs #629. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KBT5              	100.00%		B3L6H9              	100.00%
Bootstrap support for Q5KBT5 as seed ortholog is 100%.
Bootstrap support for B3L6H9 as seed ortholog is 100%.

Group of orthologs #630. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.knowlesi:24

Q5K818              	100.00%		B3L9Z7              	100.00%
Bootstrap support for Q5K818 as seed ortholog is 56%.
Alternative seed ortholog is Q5KI42 (5 bits away from this cluster)
Bootstrap support for B3L9Z7 as seed ortholog is 82%.

Group of orthologs #631. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KKY5              	100.00%		B3L3G6              	100.00%
Bootstrap support for Q5KKY5 as seed ortholog is 100%.
Bootstrap support for B3L3G6 as seed ortholog is 100%.

Group of orthologs #632. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KFJ6              	100.00%		B3L8G3              	100.00%
Bootstrap support for Q5KFJ6 as seed ortholog is 100%.
Bootstrap support for B3L8G3 as seed ortholog is 100%.

Group of orthologs #633. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KG91              	100.00%		B3LB24              	100.00%
Bootstrap support for Q5KG91 as seed ortholog is 100%.
Bootstrap support for B3LB24 as seed ortholog is 100%.

Group of orthologs #634. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.knowlesi:136

Q5KJJ4              	100.00%		B3LCJ4              	100.00%
Bootstrap support for Q5KJJ4 as seed ortholog is 100%.
Bootstrap support for B3LCJ4 as seed ortholog is 100%.

Group of orthologs #635. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.knowlesi:135

Q5KFS4              	100.00%		B3L745              	100.00%
Bootstrap support for Q5KFS4 as seed ortholog is 100%.
Bootstrap support for B3L745 as seed ortholog is 100%.

Group of orthologs #636. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.knowlesi:134

P0CN50              	100.00%		B3L5Y1              	100.00%
Bootstrap support for P0CN50 as seed ortholog is 100%.
Bootstrap support for B3L5Y1 as seed ortholog is 100%.

Group of orthologs #637. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.knowlesi:134

P0CM26              	100.00%		B3LCN4              	100.00%
Bootstrap support for P0CM26 as seed ortholog is 100%.
Bootstrap support for B3LCN4 as seed ortholog is 100%.

Group of orthologs #638. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.knowlesi:133

Q5KEZ5              	100.00%		B3L596              	100.00%
Bootstrap support for Q5KEZ5 as seed ortholog is 100%.
Bootstrap support for B3L596 as seed ortholog is 100%.

Group of orthologs #639. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.knowlesi:133

Q5KN72              	100.00%		B3L3Q7              	100.00%
Bootstrap support for Q5KN72 as seed ortholog is 100%.
Bootstrap support for B3L3Q7 as seed ortholog is 100%.

Group of orthologs #640. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.knowlesi:53

Q5KMP1              	100.00%		B3L4T5              	100.00%
Bootstrap support for Q5KMP1 as seed ortholog is 100%.
Bootstrap support for B3L4T5 as seed ortholog is 72%.
Alternative seed ortholog is B3L5C8 (53 bits away from this cluster)

Group of orthologs #641. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.knowlesi:133

Q5KM03              	100.00%		B3LB97              	100.00%
Bootstrap support for Q5KM03 as seed ortholog is 100%.
Bootstrap support for B3LB97 as seed ortholog is 100%.

Group of orthologs #642. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.knowlesi:132

P0CP10              	100.00%		B3L7R2              	100.00%
Bootstrap support for P0CP10 as seed ortholog is 100%.
Bootstrap support for B3L7R2 as seed ortholog is 100%.

Group of orthologs #643. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.knowlesi:73

Q5KFV8              	100.00%		B3KZF9              	100.00%
Bootstrap support for Q5KFV8 as seed ortholog is 100%.
Bootstrap support for B3KZF9 as seed ortholog is 99%.

Group of orthologs #644. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.knowlesi:132

Q5KJ01              	100.00%		B3L6W7              	100.00%
Bootstrap support for Q5KJ01 as seed ortholog is 100%.
Bootstrap support for B3L6W7 as seed ortholog is 100%.

Group of orthologs #645. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.knowlesi:132

Q5KN16              	100.00%		B3L6U9              	100.00%
Bootstrap support for Q5KN16 as seed ortholog is 100%.
Bootstrap support for B3L6U9 as seed ortholog is 100%.

Group of orthologs #646. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.knowlesi:131

Q5KBS3              	100.00%		B3LC58              	100.00%
                    	       		B3L7H4              	27.42%
Bootstrap support for Q5KBS3 as seed ortholog is 100%.
Bootstrap support for B3LC58 as seed ortholog is 100%.

Group of orthologs #647. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.knowlesi:131

Q5KHZ6              	100.00%		B3L236              	100.00%
Bootstrap support for Q5KHZ6 as seed ortholog is 100%.
Bootstrap support for B3L236 as seed ortholog is 100%.

Group of orthologs #648. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.knowlesi:131

Q5KHZ1              	100.00%		B3L2W0              	100.00%
Bootstrap support for Q5KHZ1 as seed ortholog is 100%.
Bootstrap support for B3L2W0 as seed ortholog is 100%.

Group of orthologs #649. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:131

Q5KDG6              	100.00%		B3LA38              	100.00%
Bootstrap support for Q5KDG6 as seed ortholog is 90%.
Bootstrap support for B3LA38 as seed ortholog is 100%.

Group of orthologs #650. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.knowlesi:60

Q5KFS7              	100.00%		B3LDF0              	100.00%
Bootstrap support for Q5KFS7 as seed ortholog is 87%.
Bootstrap support for B3LDF0 as seed ortholog is 98%.

Group of orthologs #651. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.knowlesi:130

Q5KCP3              	100.00%		B3L0H5              	100.00%
Bootstrap support for Q5KCP3 as seed ortholog is 100%.
Bootstrap support for B3L0H5 as seed ortholog is 100%.

Group of orthologs #652. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.knowlesi:130

P0CR18              	100.00%		B3L6C0              	100.00%
Bootstrap support for P0CR18 as seed ortholog is 100%.
Bootstrap support for B3L6C0 as seed ortholog is 100%.

Group of orthologs #653. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.knowlesi:130

Q5KIG4              	100.00%		B3LAY3              	100.00%
Bootstrap support for Q5KIG4 as seed ortholog is 100%.
Bootstrap support for B3LAY3 as seed ortholog is 100%.

Group of orthologs #654. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.knowlesi:129

Q5KLM0              	100.00%		B3L4C4              	100.00%
Bootstrap support for Q5KLM0 as seed ortholog is 100%.
Bootstrap support for B3L4C4 as seed ortholog is 100%.

Group of orthologs #655. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.knowlesi:129

Q5KPM8              	100.00%		B3L1V2              	100.00%
Bootstrap support for Q5KPM8 as seed ortholog is 100%.
Bootstrap support for B3L1V2 as seed ortholog is 100%.

Group of orthologs #656. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.knowlesi:129

Q5KKU8              	100.00%		B3L7Y2              	100.00%
Bootstrap support for Q5KKU8 as seed ortholog is 100%.
Bootstrap support for B3L7Y2 as seed ortholog is 100%.

Group of orthologs #657. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

P0CO82              	100.00%		B3L865              	100.00%
Bootstrap support for P0CO82 as seed ortholog is 100%.
Bootstrap support for B3L865 as seed ortholog is 100%.

Group of orthologs #658. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

Q5KCQ4              	100.00%		B3L3I6              	100.00%
Bootstrap support for Q5KCQ4 as seed ortholog is 100%.
Bootstrap support for B3L3I6 as seed ortholog is 100%.

Group of orthologs #659. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

Q5KFN9              	100.00%		B3L0W9              	100.00%
Bootstrap support for Q5KFN9 as seed ortholog is 100%.
Bootstrap support for B3L0W9 as seed ortholog is 100%.

Group of orthologs #660. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

Q5KKF7              	100.00%		B3KZ83              	100.00%
Bootstrap support for Q5KKF7 as seed ortholog is 100%.
Bootstrap support for B3KZ83 as seed ortholog is 100%.

Group of orthologs #661. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

Q5K8I0              	100.00%		B3LAP9              	100.00%
Bootstrap support for Q5K8I0 as seed ortholog is 100%.
Bootstrap support for B3LAP9 as seed ortholog is 100%.

Group of orthologs #662. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

Q5KQ40              	100.00%		B3L1M2              	100.00%
Bootstrap support for Q5KQ40 as seed ortholog is 100%.
Bootstrap support for B3L1M2 as seed ortholog is 100%.

Group of orthologs #663. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:128

Q5KPE4              	100.00%		B3L629              	100.00%
Bootstrap support for Q5KPE4 as seed ortholog is 100%.
Bootstrap support for B3L629 as seed ortholog is 100%.

Group of orthologs #664. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.knowlesi:69

Q5KNC7              	100.00%		B3LAW9              	100.00%
Bootstrap support for Q5KNC7 as seed ortholog is 100%.
Bootstrap support for B3LAW9 as seed ortholog is 99%.

Group of orthologs #665. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.knowlesi:127

Q5KAB1              	100.00%		B3L3G8              	100.00%
Bootstrap support for Q5KAB1 as seed ortholog is 100%.
Bootstrap support for B3L3G8 as seed ortholog is 100%.

Group of orthologs #666. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.knowlesi:127

Q5KBW6              	100.00%		B3LBI9              	100.00%
Bootstrap support for Q5KBW6 as seed ortholog is 100%.
Bootstrap support for B3LBI9 as seed ortholog is 100%.

Group of orthologs #667. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.knowlesi:127

Q5KGV9              	100.00%		B3LAD1              	100.00%
Bootstrap support for Q5KGV9 as seed ortholog is 100%.
Bootstrap support for B3LAD1 as seed ortholog is 100%.

Group of orthologs #668. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.knowlesi:126

Q5KMR3              	100.00%		B3L4B7              	100.00%
Bootstrap support for Q5KMR3 as seed ortholog is 100%.
Bootstrap support for B3L4B7 as seed ortholog is 100%.

Group of orthologs #669. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.knowlesi:125

Q5KAE4              	100.00%		B3L176              	100.00%
Bootstrap support for Q5KAE4 as seed ortholog is 100%.
Bootstrap support for B3L176 as seed ortholog is 100%.

Group of orthologs #670. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.knowlesi:125

P0CS66              	100.00%		B3L910              	100.00%
Bootstrap support for P0CS66 as seed ortholog is 100%.
Bootstrap support for B3L910 as seed ortholog is 100%.

Group of orthologs #671. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.knowlesi:125

Q5K9R0              	100.00%		B3L9N2              	100.00%
Bootstrap support for Q5K9R0 as seed ortholog is 100%.
Bootstrap support for B3L9N2 as seed ortholog is 100%.

Group of orthologs #672. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.knowlesi:125

Q5KMM9              	100.00%		B3LAL4              	100.00%
Bootstrap support for Q5KMM9 as seed ortholog is 100%.
Bootstrap support for B3LAL4 as seed ortholog is 100%.

Group of orthologs #673. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.knowlesi:124

Q5KH08              	100.00%		B3KZT0              	100.00%
Bootstrap support for Q5KH08 as seed ortholog is 100%.
Bootstrap support for B3KZT0 as seed ortholog is 100%.

Group of orthologs #674. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.knowlesi:123

Q5KDQ5              	100.00%		B3L3N3              	100.00%
Bootstrap support for Q5KDQ5 as seed ortholog is 100%.
Bootstrap support for B3L3N3 as seed ortholog is 100%.

Group of orthologs #675. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.knowlesi:123

Q5KD00              	100.00%		B3L625              	100.00%
Bootstrap support for Q5KD00 as seed ortholog is 100%.
Bootstrap support for B3L625 as seed ortholog is 100%.

Group of orthologs #676. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:122

Q5KAU4              	100.00%		B3L8R9              	100.00%
Bootstrap support for Q5KAU4 as seed ortholog is 100%.
Bootstrap support for B3L8R9 as seed ortholog is 100%.

Group of orthologs #677. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:122

Q5KLK6              	100.00%		B3L0Q3              	100.00%
Bootstrap support for Q5KLK6 as seed ortholog is 100%.
Bootstrap support for B3L0Q3 as seed ortholog is 100%.

Group of orthologs #678. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:122

Q5KA28              	100.00%		B3LBM4              	100.00%
Bootstrap support for Q5KA28 as seed ortholog is 100%.
Bootstrap support for B3LBM4 as seed ortholog is 100%.

Group of orthologs #679. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:122

Q5KI23              	100.00%		B3L671              	100.00%
Bootstrap support for Q5KI23 as seed ortholog is 100%.
Bootstrap support for B3L671 as seed ortholog is 100%.

Group of orthologs #680. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:122

Q5KNT0              	100.00%		B3L319              	100.00%
Bootstrap support for Q5KNT0 as seed ortholog is 100%.
Bootstrap support for B3L319 as seed ortholog is 100%.

Group of orthologs #681. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.knowlesi:122

Q5KL89              	100.00%		B3L901              	100.00%
Bootstrap support for Q5KL89 as seed ortholog is 100%.
Bootstrap support for B3L901 as seed ortholog is 100%.

Group of orthologs #682. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

P0CO54              	100.00%		B3L1V7              	100.00%
Bootstrap support for P0CO54 as seed ortholog is 100%.
Bootstrap support for B3L1V7 as seed ortholog is 100%.

Group of orthologs #683. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

P0CR82              	100.00%		B3L6G0              	100.00%
Bootstrap support for P0CR82 as seed ortholog is 100%.
Bootstrap support for B3L6G0 as seed ortholog is 100%.

Group of orthologs #684. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:36 P.knowlesi:121

Q5KEK2              	100.00%		B3L163              	100.00%
Bootstrap support for Q5KEK2 as seed ortholog is 81%.
Bootstrap support for B3L163 as seed ortholog is 100%.

Group of orthologs #685. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

Q5KB98              	100.00%		B3L6N7              	100.00%
Bootstrap support for Q5KB98 as seed ortholog is 100%.
Bootstrap support for B3L6N7 as seed ortholog is 100%.

Group of orthologs #686. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

Q5KFG9              	100.00%		B3L5N0              	100.00%
Bootstrap support for Q5KFG9 as seed ortholog is 100%.
Bootstrap support for B3L5N0 as seed ortholog is 100%.

Group of orthologs #687. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

Q5KN25              	100.00%		B3KZ52              	100.00%
Bootstrap support for Q5KN25 as seed ortholog is 100%.
Bootstrap support for B3KZ52 as seed ortholog is 100%.

Group of orthologs #688. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.knowlesi:49

Q5KDR7              	100.00%		B3LD56              	100.00%
Bootstrap support for Q5KDR7 as seed ortholog is 79%.
Bootstrap support for B3LD56 as seed ortholog is 90%.

Group of orthologs #689. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

Q5KFF0              	100.00%		B3LCD2              	100.00%
Bootstrap support for Q5KFF0 as seed ortholog is 100%.
Bootstrap support for B3LCD2 as seed ortholog is 100%.

Group of orthologs #690. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.knowlesi:121

Q5KJT1              	100.00%		B3LC03              	100.00%
Bootstrap support for Q5KJT1 as seed ortholog is 100%.
Bootstrap support for B3LC03 as seed ortholog is 100%.

Group of orthologs #691. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.knowlesi:54

Q5K9P5              	100.00%		B3L2Z9              	100.00%
Bootstrap support for Q5K9P5 as seed ortholog is 100%.
Bootstrap support for B3L2Z9 as seed ortholog is 94%.

Group of orthologs #692. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.knowlesi:120

Q5KFL6              	100.00%		B3KYX5              	100.00%
Bootstrap support for Q5KFL6 as seed ortholog is 100%.
Bootstrap support for B3KYX5 as seed ortholog is 100%.

Group of orthologs #693. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.knowlesi:120

Q5KLP3              	100.00%		B3L2Q6              	100.00%
Bootstrap support for Q5KLP3 as seed ortholog is 100%.
Bootstrap support for B3L2Q6 as seed ortholog is 100%.

Group of orthologs #694. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.knowlesi:120

Q5KDU6              	100.00%		B3LBP5              	100.00%
Bootstrap support for Q5KDU6 as seed ortholog is 100%.
Bootstrap support for B3LBP5 as seed ortholog is 100%.

Group of orthologs #695. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.knowlesi:119

P0CQ18              	100.00%		B3L8M1              	100.00%
P0CQ20              	58.40%		
Bootstrap support for P0CQ18 as seed ortholog is 100%.
Bootstrap support for B3L8M1 as seed ortholog is 100%.

Group of orthologs #696. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.knowlesi:119

P0CR34              	100.00%		B3L1N7              	100.00%
Bootstrap support for P0CR34 as seed ortholog is 95%.
Bootstrap support for B3L1N7 as seed ortholog is 100%.

Group of orthologs #697. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.knowlesi:119

Q5KM35              	100.00%		B3L418              	100.00%
Bootstrap support for Q5KM35 as seed ortholog is 100%.
Bootstrap support for B3L418 as seed ortholog is 100%.

Group of orthologs #698. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.knowlesi:119

Q5KP99              	100.00%		B3LA15              	100.00%
Bootstrap support for Q5KP99 as seed ortholog is 100%.
Bootstrap support for B3LA15 as seed ortholog is 100%.

Group of orthologs #699. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.knowlesi:118

Q5K726              	100.00%		B3L4C3              	100.00%
Bootstrap support for Q5K726 as seed ortholog is 100%.
Bootstrap support for B3L4C3 as seed ortholog is 100%.

Group of orthologs #700. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.knowlesi:118

Q5KGK3              	100.00%		B3L0C6              	100.00%
Bootstrap support for Q5KGK3 as seed ortholog is 100%.
Bootstrap support for B3L0C6 as seed ortholog is 100%.

Group of orthologs #701. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.knowlesi:118

Q5K7W7              	100.00%		B3LCM6              	100.00%
Bootstrap support for Q5K7W7 as seed ortholog is 100%.
Bootstrap support for B3LCM6 as seed ortholog is 100%.

Group of orthologs #702. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.knowlesi:118

Q5KLV9              	100.00%		B3L692              	100.00%
Bootstrap support for Q5KLV9 as seed ortholog is 100%.
Bootstrap support for B3L692 as seed ortholog is 100%.

Group of orthologs #703. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.knowlesi:117

Q5KB64              	100.00%		B3L052              	100.00%
Bootstrap support for Q5KB64 as seed ortholog is 100%.
Bootstrap support for B3L052 as seed ortholog is 100%.

Group of orthologs #704. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.knowlesi:117

Q5KGS9              	100.00%		B3KZK0              	100.00%
Bootstrap support for Q5KGS9 as seed ortholog is 100%.
Bootstrap support for B3KZK0 as seed ortholog is 100%.

Group of orthologs #705. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.knowlesi:117

Q5KH24              	100.00%		B3L7N2              	100.00%
Bootstrap support for Q5KH24 as seed ortholog is 100%.
Bootstrap support for B3L7N2 as seed ortholog is 100%.

Group of orthologs #706. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.knowlesi:117

Q5KNR0              	100.00%		B3LBT9              	100.00%
Bootstrap support for Q5KNR0 as seed ortholog is 100%.
Bootstrap support for B3LBT9 as seed ortholog is 100%.

Group of orthologs #707. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.knowlesi:116

Q5KEC8              	100.00%		B3L1K9              	100.00%
Bootstrap support for Q5KEC8 as seed ortholog is 100%.
Bootstrap support for B3L1K9 as seed ortholog is 100%.

Group of orthologs #708. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.knowlesi:116

Q5KL56              	100.00%		B3KZ11              	100.00%
Bootstrap support for Q5KL56 as seed ortholog is 100%.
Bootstrap support for B3KZ11 as seed ortholog is 100%.

Group of orthologs #709. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.knowlesi:116

Q5KIZ8              	100.00%		B3L4X4              	100.00%
Bootstrap support for Q5KIZ8 as seed ortholog is 100%.
Bootstrap support for B3L4X4 as seed ortholog is 100%.

Group of orthologs #710. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:31 P.knowlesi:116

Q5KGC6              	100.00%		B3LBK8              	100.00%
Bootstrap support for Q5KGC6 as seed ortholog is 89%.
Bootstrap support for B3LBK8 as seed ortholog is 100%.

Group of orthologs #711. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.knowlesi:115

Q5KMC4              	100.00%		B3L4N5              	100.00%
Bootstrap support for Q5KMC4 as seed ortholog is 100%.
Bootstrap support for B3L4N5 as seed ortholog is 100%.

Group of orthologs #712. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.knowlesi:115

Q5KMX2              	100.00%		B3L560              	100.00%
Bootstrap support for Q5KMX2 as seed ortholog is 100%.
Bootstrap support for B3L560 as seed ortholog is 100%.

Group of orthologs #713. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.knowlesi:45

Q5KGS0              	100.00%		B3L362              	100.00%
Q5K717              	6.82%		
Q5KE65              	6.10%		
Bootstrap support for Q5KGS0 as seed ortholog is 100%.
Bootstrap support for B3L362 as seed ortholog is 99%.

Group of orthologs #714. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.knowlesi:114

Q5KBT3              	100.00%		B3L2L4              	100.00%
Bootstrap support for Q5KBT3 as seed ortholog is 100%.
Bootstrap support for B3L2L4 as seed ortholog is 100%.

Group of orthologs #715. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.knowlesi:114

P0CN20              	100.00%		B3LA96              	100.00%
Bootstrap support for P0CN20 as seed ortholog is 100%.
Bootstrap support for B3LA96 as seed ortholog is 100%.

Group of orthologs #716. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.knowlesi:21

Q5KGQ8              	100.00%		B3LD96              	100.00%
Bootstrap support for Q5KGQ8 as seed ortholog is 100%.
Bootstrap support for B3LD96 as seed ortholog is 74%.
Alternative seed ortholog is B3L2K0 (21 bits away from this cluster)

Group of orthologs #717. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.knowlesi:114

Q5KMI3              	100.00%		B3LBW0              	100.00%
Bootstrap support for Q5KMI3 as seed ortholog is 100%.
Bootstrap support for B3LBW0 as seed ortholog is 100%.

Group of orthologs #718. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.knowlesi:113

Q5KBW1              	100.00%		B3L2R0              	100.00%
Bootstrap support for Q5KBW1 as seed ortholog is 100%.
Bootstrap support for B3L2R0 as seed ortholog is 100%.

Group of orthologs #719. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.knowlesi:113

Q5KN65              	100.00%		B3L9F7              	100.00%
Bootstrap support for Q5KN65 as seed ortholog is 100%.
Bootstrap support for B3L9F7 as seed ortholog is 100%.

Group of orthologs #720. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.knowlesi:112

Q5KER8              	100.00%		B3L0Q9              	100.00%
Q5KGW3              	23.95%		
Bootstrap support for Q5KER8 as seed ortholog is 100%.
Bootstrap support for B3L0Q9 as seed ortholog is 100%.

Group of orthologs #721. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.knowlesi:112

Q5K7B3              	100.00%		B3L0B4              	100.00%
Bootstrap support for Q5K7B3 as seed ortholog is 100%.
Bootstrap support for B3L0B4 as seed ortholog is 100%.

Group of orthologs #722. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.knowlesi:111

Q5K766              	100.00%		B3L973              	100.00%
Bootstrap support for Q5K766 as seed ortholog is 100%.
Bootstrap support for B3L973 as seed ortholog is 100%.

Group of orthologs #723. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.knowlesi:111

Q5KM44              	100.00%		B3L0G8              	100.00%
Bootstrap support for Q5KM44 as seed ortholog is 100%.
Bootstrap support for B3L0G8 as seed ortholog is 100%.

Group of orthologs #724. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.knowlesi:111

Q5KG59              	100.00%		B3LBF4              	100.00%
Bootstrap support for Q5KG59 as seed ortholog is 100%.
Bootstrap support for B3LBF4 as seed ortholog is 100%.

Group of orthologs #725. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.knowlesi:110

Q5KPC0              	100.00%		B3L0C4              	100.00%
Bootstrap support for Q5KPC0 as seed ortholog is 100%.
Bootstrap support for B3L0C4 as seed ortholog is 100%.

Group of orthologs #726. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.knowlesi:110

Q5KHU5              	100.00%		B3L8Q8              	100.00%
Bootstrap support for Q5KHU5 as seed ortholog is 100%.
Bootstrap support for B3L8Q8 as seed ortholog is 100%.

Group of orthologs #727. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.knowlesi:109

Q5KDM5              	100.00%		B3L2S2              	100.00%
Q5KDM8              	90.00%		
Bootstrap support for Q5KDM5 as seed ortholog is 94%.
Bootstrap support for B3L2S2 as seed ortholog is 100%.

Group of orthologs #728. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.knowlesi:109

P0CP32              	100.00%		B3L4T4              	100.00%
Bootstrap support for P0CP32 as seed ortholog is 100%.
Bootstrap support for B3L4T4 as seed ortholog is 100%.

Group of orthologs #729. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.knowlesi:109

P0CQ12              	100.00%		B3L948              	100.00%
Bootstrap support for P0CQ12 as seed ortholog is 100%.
Bootstrap support for B3L948 as seed ortholog is 100%.

Group of orthologs #730. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.knowlesi:109

Q5KBQ4              	100.00%		B3L4G7              	100.00%
Bootstrap support for Q5KBQ4 as seed ortholog is 100%.
Bootstrap support for B3L4G7 as seed ortholog is 100%.

Group of orthologs #731. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.knowlesi:109

Q5KPS7              	100.00%		B3L9G0              	100.00%
Bootstrap support for Q5KPS7 as seed ortholog is 100%.
Bootstrap support for B3L9G0 as seed ortholog is 100%.

Group of orthologs #732. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.knowlesi:108

Q5KJL6              	100.00%		B3L1P2              	100.00%
Bootstrap support for Q5KJL6 as seed ortholog is 100%.
Bootstrap support for B3L1P2 as seed ortholog is 100%.

Group of orthologs #733. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.knowlesi:108

Q5KBY8              	100.00%		B3L9P0              	100.00%
Bootstrap support for Q5KBY8 as seed ortholog is 100%.
Bootstrap support for B3L9P0 as seed ortholog is 100%.

Group of orthologs #734. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.knowlesi:108

Q5KLK2              	100.00%		B3L267              	100.00%
Bootstrap support for Q5KLK2 as seed ortholog is 100%.
Bootstrap support for B3L267 as seed ortholog is 100%.

Group of orthologs #735. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.knowlesi:108

Q5KK99              	100.00%		B3L4C6              	100.00%
Bootstrap support for Q5KK99 as seed ortholog is 100%.
Bootstrap support for B3L4C6 as seed ortholog is 100%.

Group of orthologs #736. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.knowlesi:107

Q5K8L4              	100.00%		B3L5P4              	100.00%
Bootstrap support for Q5K8L4 as seed ortholog is 100%.
Bootstrap support for B3L5P4 as seed ortholog is 100%.

Group of orthologs #737. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.knowlesi:107

Q5K9U5              	100.00%		B3L8G7              	100.00%
Bootstrap support for Q5K9U5 as seed ortholog is 100%.
Bootstrap support for B3L8G7 as seed ortholog is 100%.

Group of orthologs #738. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.knowlesi:107

Q5KA21              	100.00%		B3L8R3              	100.00%
Bootstrap support for Q5KA21 as seed ortholog is 100%.
Bootstrap support for B3L8R3 as seed ortholog is 100%.

Group of orthologs #739. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.knowlesi:107

Q5KJ65              	100.00%		B3L1E5              	100.00%
Bootstrap support for Q5KJ65 as seed ortholog is 88%.
Bootstrap support for B3L1E5 as seed ortholog is 100%.

Group of orthologs #740. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.knowlesi:107

Q5KPG7              	100.00%		B3L309              	100.00%
Bootstrap support for Q5KPG7 as seed ortholog is 100%.
Bootstrap support for B3L309 as seed ortholog is 100%.

Group of orthologs #741. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.knowlesi:107

Q5KQ86              	100.00%		B3LCN5              	100.00%
Bootstrap support for Q5KQ86 as seed ortholog is 100%.
Bootstrap support for B3LCN5 as seed ortholog is 100%.

Group of orthologs #742. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5K978              	100.00%		B3L6X5              	100.00%
Q5KB78              	6.26%		
Bootstrap support for Q5K978 as seed ortholog is 100%.
Bootstrap support for B3L6X5 as seed ortholog is 100%.

Group of orthologs #743. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5KJG1              	100.00%		B3KZL3              	100.00%
Bootstrap support for Q5KJG1 as seed ortholog is 100%.
Bootstrap support for B3KZL3 as seed ortholog is 100%.

Group of orthologs #744. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5KEL1              	100.00%		B3L660              	100.00%
Bootstrap support for Q5KEL1 as seed ortholog is 100%.
Bootstrap support for B3L660 as seed ortholog is 100%.

Group of orthologs #745. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5KP38              	100.00%		B3L1L3              	100.00%
Bootstrap support for Q5KP38 as seed ortholog is 100%.
Bootstrap support for B3L1L3 as seed ortholog is 100%.

Group of orthologs #746. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5KN73              	100.00%		B3L554              	100.00%
Bootstrap support for Q5KN73 as seed ortholog is 100%.
Bootstrap support for B3L554 as seed ortholog is 100%.

Group of orthologs #747. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5KNE0              	100.00%		B3L6N2              	100.00%
Bootstrap support for Q5KNE0 as seed ortholog is 100%.
Bootstrap support for B3L6N2 as seed ortholog is 100%.

Group of orthologs #748. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.knowlesi:106

Q5KPF9              	100.00%		B3LD50              	100.00%
Bootstrap support for Q5KPF9 as seed ortholog is 100%.
Bootstrap support for B3LD50 as seed ortholog is 100%.

Group of orthologs #749. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.knowlesi:105

Q5KAQ7              	100.00%		B3KZ70              	100.00%
Bootstrap support for Q5KAQ7 as seed ortholog is 100%.
Bootstrap support for B3KZ70 as seed ortholog is 100%.

Group of orthologs #750. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.knowlesi:105

Q5K8K2              	100.00%		B3L386              	100.00%
Bootstrap support for Q5K8K2 as seed ortholog is 100%.
Bootstrap support for B3L386 as seed ortholog is 100%.

Group of orthologs #751. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.knowlesi:105

P0CS40              	100.00%		B3L5Z9              	100.00%
Bootstrap support for P0CS40 as seed ortholog is 100%.
Bootstrap support for B3L5Z9 as seed ortholog is 100%.

Group of orthologs #752. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.knowlesi:105

Q5KFU2              	100.00%		B3L899              	100.00%
Bootstrap support for Q5KFU2 as seed ortholog is 98%.
Bootstrap support for B3L899 as seed ortholog is 100%.

Group of orthologs #753. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.knowlesi:105

Q5KMY4              	100.00%		B3L488              	100.00%
Bootstrap support for Q5KMY4 as seed ortholog is 100%.
Bootstrap support for B3L488 as seed ortholog is 100%.

Group of orthologs #754. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.knowlesi:105

Q5KPN8              	100.00%		B3LBJ3              	100.00%
Bootstrap support for Q5KPN8 as seed ortholog is 100%.
Bootstrap support for B3LBJ3 as seed ortholog is 100%.

Group of orthologs #755. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KB61              	100.00%		B3L3V9              	100.00%
Bootstrap support for Q5KB61 as seed ortholog is 100%.
Bootstrap support for B3L3V9 as seed ortholog is 100%.

Group of orthologs #756. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KGL6              	100.00%		B3L050              	100.00%
Bootstrap support for Q5KGL6 as seed ortholog is 100%.
Bootstrap support for B3L050 as seed ortholog is 100%.

Group of orthologs #757. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:3

Q5KD66              	100.00%		B3L3A0              	100.00%
Bootstrap support for Q5KD66 as seed ortholog is 85%.
Bootstrap support for B3L3A0 as seed ortholog is 51%.
Alternative seed ortholog is B3L6T2 (3 bits away from this cluster)

Group of orthologs #758. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KLE3              	100.00%		B3L233              	100.00%
Bootstrap support for Q5KLE3 as seed ortholog is 100%.
Bootstrap support for B3L233 as seed ortholog is 100%.

Group of orthologs #759. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KPC1              	100.00%		B3KZQ6              	100.00%
Bootstrap support for Q5KPC1 as seed ortholog is 100%.
Bootstrap support for B3KZQ6 as seed ortholog is 100%.

Group of orthologs #760. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KJW6              	100.00%		B3L4M2              	100.00%
Bootstrap support for Q5KJW6 as seed ortholog is 100%.
Bootstrap support for B3L4M2 as seed ortholog is 100%.

Group of orthologs #761. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KK70              	100.00%		B3L9Y0              	100.00%
Bootstrap support for Q5KK70 as seed ortholog is 100%.
Bootstrap support for B3L9Y0 as seed ortholog is 100%.

Group of orthologs #762. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KKU6              	100.00%		B3LD29              	100.00%
Bootstrap support for Q5KKU6 as seed ortholog is 100%.
Bootstrap support for B3LD29 as seed ortholog is 100%.

Group of orthologs #763. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.knowlesi:104

Q5KND0              	100.00%		B3LBM7              	100.00%
Bootstrap support for Q5KND0 as seed ortholog is 100%.
Bootstrap support for B3LBM7 as seed ortholog is 100%.

Group of orthologs #764. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.knowlesi:103

P0CP90              	100.00%		B3L2Y1              	100.00%
Bootstrap support for P0CP90 as seed ortholog is 100%.
Bootstrap support for B3L2Y1 as seed ortholog is 100%.

Group of orthologs #765. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.knowlesi:103

P0CN24              	100.00%		B3LCY6              	100.00%
Bootstrap support for P0CN24 as seed ortholog is 100%.
Bootstrap support for B3LCY6 as seed ortholog is 100%.

Group of orthologs #766. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:2 P.knowlesi:102

Q5KAK0              	100.00%		B3L152              	100.00%
Bootstrap support for Q5KAK0 as seed ortholog is 51%.
Alternative seed ortholog is Q5KKH7 (2 bits away from this cluster)
Bootstrap support for B3L152 as seed ortholog is 100%.

Group of orthologs #767. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.knowlesi:102

Q5KFI3              	100.00%		B3L087              	100.00%
Bootstrap support for Q5KFI3 as seed ortholog is 100%.
Bootstrap support for B3L087 as seed ortholog is 100%.

Group of orthologs #768. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.knowlesi:19

Q5K7D5              	100.00%		B3LBN1              	100.00%
Bootstrap support for Q5K7D5 as seed ortholog is 100%.
Bootstrap support for B3LBN1 as seed ortholog is 65%.
Alternative seed ortholog is B3L324 (19 bits away from this cluster)

Group of orthologs #769. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.knowlesi:101

P0CN66              	100.00%		B3KZQ5              	100.00%
Bootstrap support for P0CN66 as seed ortholog is 100%.
Bootstrap support for B3KZQ5 as seed ortholog is 100%.

Group of orthologs #770. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.knowlesi:101

Q5KHN0              	100.00%		B3L174              	100.00%
Bootstrap support for Q5KHN0 as seed ortholog is 100%.
Bootstrap support for B3L174 as seed ortholog is 100%.

Group of orthologs #771. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.knowlesi:101

Q5KIF5              	100.00%		B3L404              	100.00%
Bootstrap support for Q5KIF5 as seed ortholog is 100%.
Bootstrap support for B3L404 as seed ortholog is 100%.

Group of orthologs #772. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.knowlesi:101

Q5KIE8              	100.00%		B3L576              	100.00%
Bootstrap support for Q5KIE8 as seed ortholog is 100%.
Bootstrap support for B3L576 as seed ortholog is 100%.

Group of orthologs #773. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.knowlesi:101

Q5KP19              	100.00%		B3L372              	100.00%
Bootstrap support for Q5KP19 as seed ortholog is 100%.
Bootstrap support for B3L372 as seed ortholog is 100%.

Group of orthologs #774. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.knowlesi:51

Q5K6X5              	100.00%		B3L085              	100.00%
Bootstrap support for Q5K6X5 as seed ortholog is 100%.
Bootstrap support for B3L085 as seed ortholog is 92%.

Group of orthologs #775. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.knowlesi:100

Q5KBQ8              	100.00%		B3L136              	100.00%
Bootstrap support for Q5KBQ8 as seed ortholog is 100%.
Bootstrap support for B3L136 as seed ortholog is 100%.

Group of orthologs #776. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.knowlesi:100

Q5KIF8              	100.00%		B3L246              	100.00%
Bootstrap support for Q5KIF8 as seed ortholog is 100%.
Bootstrap support for B3L246 as seed ortholog is 100%.

Group of orthologs #777. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.knowlesi:100

Q5KKU9              	100.00%		B3L662              	100.00%
Bootstrap support for Q5KKU9 as seed ortholog is 100%.
Bootstrap support for B3L662 as seed ortholog is 100%.

Group of orthologs #778. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.knowlesi:100

Q5KDG7              	100.00%		B3LDC6              	100.00%
Bootstrap support for Q5KDG7 as seed ortholog is 100%.
Bootstrap support for B3LDC6 as seed ortholog is 100%.

Group of orthologs #779. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KIN8              	100.00%		B3L2R8              	100.00%
Bootstrap support for Q5KIN8 as seed ortholog is 100%.
Bootstrap support for B3L2R8 as seed ortholog is 100%.

Group of orthologs #780. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KIJ9              	100.00%		B3L358              	100.00%
Bootstrap support for Q5KIJ9 as seed ortholog is 100%.
Bootstrap support for B3L358 as seed ortholog is 100%.

Group of orthologs #781. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KCT2              	100.00%		B3L964              	100.00%
Bootstrap support for Q5KCT2 as seed ortholog is 100%.
Bootstrap support for B3L964 as seed ortholog is 100%.

Group of orthologs #782. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KFU9              	100.00%		B3L6S2              	100.00%
Bootstrap support for Q5KFU9 as seed ortholog is 100%.
Bootstrap support for B3L6S2 as seed ortholog is 100%.

Group of orthologs #783. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KM42              	100.00%		B3L2Z4              	100.00%
Bootstrap support for Q5KM42 as seed ortholog is 100%.
Bootstrap support for B3L2Z4 as seed ortholog is 100%.

Group of orthologs #784. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KB56              	100.00%		B3LD46              	100.00%
Bootstrap support for Q5KB56 as seed ortholog is 100%.
Bootstrap support for B3LD46 as seed ortholog is 100%.

Group of orthologs #785. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KII4              	100.00%		B3L747              	100.00%
Bootstrap support for Q5KII4 as seed ortholog is 100%.
Bootstrap support for B3L747 as seed ortholog is 100%.

Group of orthologs #786. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.knowlesi:99

Q5KM24              	100.00%		B3LBG7              	100.00%
Bootstrap support for Q5KM24 as seed ortholog is 100%.
Bootstrap support for B3LBG7 as seed ortholog is 100%.

Group of orthologs #787. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.knowlesi:98

Q5KEB8              	100.00%		B3L925              	100.00%
Bootstrap support for Q5KEB8 as seed ortholog is 100%.
Bootstrap support for B3L925 as seed ortholog is 100%.

Group of orthologs #788. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.knowlesi:98

Q5KMC3              	100.00%		B3L474              	100.00%
Bootstrap support for Q5KMC3 as seed ortholog is 100%.
Bootstrap support for B3L474 as seed ortholog is 100%.

Group of orthologs #789. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.knowlesi:97

Q5KDL9              	100.00%		B3L7M3              	100.00%
Q5KDR0              	39.57%		B3L8Y6              	30.54%
                    	       		B3L8Y3              	27.24%
Bootstrap support for Q5KDL9 as seed ortholog is 100%.
Bootstrap support for B3L7M3 as seed ortholog is 100%.

Group of orthologs #790. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:7 P.knowlesi:97

Q5KA72              	100.00%		B3L241              	100.00%
                    	       		B3L5X9              	19.02%
                    	       		B3L7V6              	9.41%
Bootstrap support for Q5KA72 as seed ortholog is 71%.
Alternative seed ortholog is P0CS68 (7 bits away from this cluster)
Bootstrap support for B3L241 as seed ortholog is 100%.

Group of orthologs #791. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.knowlesi:97

Q5K9S4              	100.00%		B3L0D2              	100.00%
Bootstrap support for Q5K9S4 as seed ortholog is 100%.
Bootstrap support for B3L0D2 as seed ortholog is 100%.

Group of orthologs #792. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.knowlesi:55

Q5KFG5              	100.00%		B3KZB4              	100.00%
Bootstrap support for Q5KFG5 as seed ortholog is 100%.
Bootstrap support for B3KZB4 as seed ortholog is 92%.

Group of orthologs #793. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.knowlesi:97

P0CO36              	100.00%		B3L937              	100.00%
Bootstrap support for P0CO36 as seed ortholog is 100%.
Bootstrap support for B3L937 as seed ortholog is 100%.

Group of orthologs #794. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.knowlesi:9

Q5KBU2              	100.00%		B3LAZ0              	100.00%
Bootstrap support for Q5KBU2 as seed ortholog is 100%.
Bootstrap support for B3LAZ0 as seed ortholog is 57%.
Alternative seed ortholog is B3L550 (9 bits away from this cluster)

Group of orthologs #795. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.knowlesi:96

P0CN16              	100.00%		B3L444              	100.00%
Bootstrap support for P0CN16 as seed ortholog is 96%.
Bootstrap support for B3L444 as seed ortholog is 100%.

Group of orthologs #796. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.knowlesi:96

Q5KCK9              	100.00%		B3L1E4              	100.00%
Bootstrap support for Q5KCK9 as seed ortholog is 100%.
Bootstrap support for B3L1E4 as seed ortholog is 100%.

Group of orthologs #797. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.knowlesi:96

P0CP64              	100.00%		B3L7Q1              	100.00%
Bootstrap support for P0CP64 as seed ortholog is 100%.
Bootstrap support for B3L7Q1 as seed ortholog is 100%.

Group of orthologs #798. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.knowlesi:96

Q5K864              	100.00%		B3LBK1              	100.00%
Bootstrap support for Q5K864 as seed ortholog is 100%.
Bootstrap support for B3LBK1 as seed ortholog is 100%.

Group of orthologs #799. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.knowlesi:96

Q5KLG7              	100.00%		B3L3B0              	100.00%
Bootstrap support for Q5KLG7 as seed ortholog is 100%.
Bootstrap support for B3L3B0 as seed ortholog is 100%.

Group of orthologs #800. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:17 P.knowlesi:96

Q5KGM3              	100.00%		B3LD67              	100.00%
Bootstrap support for Q5KGM3 as seed ortholog is 72%.
Alternative seed ortholog is Q5K762 (17 bits away from this cluster)
Bootstrap support for B3LD67 as seed ortholog is 100%.

Group of orthologs #801. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:95

P0CN78              	100.00%		B3LBQ7              	100.00%
Bootstrap support for P0CN78 as seed ortholog is 100%.
Bootstrap support for B3LBQ7 as seed ortholog is 100%.

Group of orthologs #802. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:95

Q5KA81              	100.00%		B3LAL2              	100.00%
Bootstrap support for Q5KA81 as seed ortholog is 100%.
Bootstrap support for B3LAL2 as seed ortholog is 100%.

Group of orthologs #803. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:95

Q5KFA1              	100.00%		B3L720              	100.00%
Bootstrap support for Q5KFA1 as seed ortholog is 100%.
Bootstrap support for B3L720 as seed ortholog is 100%.

Group of orthologs #804. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:95

Q5KH76              	100.00%		B3L5M8              	100.00%
Bootstrap support for Q5KH76 as seed ortholog is 100%.
Bootstrap support for B3L5M8 as seed ortholog is 100%.

Group of orthologs #805. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.knowlesi:95

Q5KF90              	100.00%		B3L9Z9              	100.00%
Bootstrap support for Q5KF90 as seed ortholog is 100%.
Bootstrap support for B3L9Z9 as seed ortholog is 100%.

Group of orthologs #806. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KHB8              	100.00%		B3L9U0              	100.00%
Q5K7D6              	17.42%		B3LBA8              	100.00%
Bootstrap support for Q5KHB8 as seed ortholog is 100%.
Bootstrap support for B3L9U0 as seed ortholog is 100%.
Bootstrap support for B3LBA8 as seed ortholog is 100%.

Group of orthologs #807. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KE19              	100.00%		B3KZI2              	100.00%
Bootstrap support for Q5KE19 as seed ortholog is 100%.
Bootstrap support for B3KZI2 as seed ortholog is 100%.

Group of orthologs #808. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

P0CS95              	100.00%		B3L6D8              	100.00%
Bootstrap support for P0CS95 as seed ortholog is 100%.
Bootstrap support for B3L6D8 as seed ortholog is 100%.

Group of orthologs #809. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KDJ5              	100.00%		B3L0G5              	100.00%
Bootstrap support for Q5KDJ5 as seed ortholog is 100%.
Bootstrap support for B3L0G5 as seed ortholog is 100%.

Group of orthologs #810. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KMS2              	100.00%		B3KZ26              	100.00%
Bootstrap support for Q5KMS2 as seed ortholog is 100%.
Bootstrap support for B3KZ26 as seed ortholog is 100%.

Group of orthologs #811. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KCV8              	100.00%		B3LAP2              	100.00%
Bootstrap support for Q5KCV8 as seed ortholog is 100%.
Bootstrap support for B3LAP2 as seed ortholog is 100%.

Group of orthologs #812. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KGM8              	100.00%		B3L8L0              	100.00%
Bootstrap support for Q5KGM8 as seed ortholog is 100%.
Bootstrap support for B3L8L0 as seed ortholog is 100%.

Group of orthologs #813. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.knowlesi:94

Q5KK55              	100.00%		B3L9J3              	100.00%
Bootstrap support for Q5KK55 as seed ortholog is 100%.
Bootstrap support for B3L9J3 as seed ortholog is 100%.

Group of orthologs #814. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.knowlesi:93

Q5K9N6              	100.00%		B3LBC8              	100.00%
Bootstrap support for Q5K9N6 as seed ortholog is 100%.
Bootstrap support for B3LBC8 as seed ortholog is 100%.

Group of orthologs #815. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.knowlesi:92

Q5KCV9              	100.00%		B3KZG4              	100.00%
Bootstrap support for Q5KCV9 as seed ortholog is 100%.
Bootstrap support for B3KZG4 as seed ortholog is 100%.

Group of orthologs #816. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.knowlesi:28

Q5K9S1              	100.00%		B3L8Y8              	100.00%
Bootstrap support for Q5K9S1 as seed ortholog is 100%.
Bootstrap support for B3L8Y8 as seed ortholog is 82%.

Group of orthologs #817. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.knowlesi:92

Q5KFD2              	100.00%		B3L4A3              	100.00%
Bootstrap support for Q5KFD2 as seed ortholog is 100%.
Bootstrap support for B3L4A3 as seed ortholog is 100%.

Group of orthologs #818. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.knowlesi:92

Q5KEW0              	100.00%		B3L5H7              	100.00%
Bootstrap support for Q5KEW0 as seed ortholog is 100%.
Bootstrap support for B3L5H7 as seed ortholog is 100%.

Group of orthologs #819. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.knowlesi:92

Q5KF63              	100.00%		B3L5K5              	100.00%
Bootstrap support for Q5KF63 as seed ortholog is 100%.
Bootstrap support for B3L5K5 as seed ortholog is 100%.

Group of orthologs #820. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.knowlesi:92

Q5KJ49              	100.00%		B3L987              	100.00%
Bootstrap support for Q5KJ49 as seed ortholog is 100%.
Bootstrap support for B3L987 as seed ortholog is 100%.

Group of orthologs #821. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.knowlesi:91

P0CO56              	100.00%		B3LA20              	100.00%
Bootstrap support for P0CO56 as seed ortholog is 100%.
Bootstrap support for B3LA20 as seed ortholog is 100%.

Group of orthologs #822. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.knowlesi:91

Q5KB29              	100.00%		B3L8W9              	100.00%
Bootstrap support for Q5KB29 as seed ortholog is 100%.
Bootstrap support for B3L8W9 as seed ortholog is 100%.

Group of orthologs #823. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.knowlesi:91

Q5K889              	100.00%		B3LD71              	100.00%
Bootstrap support for Q5K889 as seed ortholog is 100%.
Bootstrap support for B3LD71 as seed ortholog is 100%.

Group of orthologs #824. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.knowlesi:39

Q5KHU0              	100.00%		B3LAB5              	100.00%
Bootstrap support for Q5KHU0 as seed ortholog is 100%.
Bootstrap support for B3LAB5 as seed ortholog is 92%.

Group of orthologs #825. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.knowlesi:91

Q5KMH2              	100.00%		B3LBB5              	100.00%
Bootstrap support for Q5KMH2 as seed ortholog is 100%.
Bootstrap support for B3LBB5 as seed ortholog is 100%.

Group of orthologs #826. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

P0CP14              	100.00%		B3L6U4              	100.00%
Q5KCJ5              	15.17%		
Bootstrap support for P0CP14 as seed ortholog is 100%.
Bootstrap support for B3L6U4 as seed ortholog is 100%.

Group of orthologs #827. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

Q5KF49              	100.00%		B3L6I6              	100.00%
                    	       		B3L5W0              	16.92%
Bootstrap support for Q5KF49 as seed ortholog is 100%.
Bootstrap support for B3L6I6 as seed ortholog is 100%.

Group of orthologs #828. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

P0CO38              	100.00%		B3L4N3              	100.00%
Bootstrap support for P0CO38 as seed ortholog is 100%.
Bootstrap support for B3L4N3 as seed ortholog is 100%.

Group of orthologs #829. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

Q5KBR9              	100.00%		B3L001              	100.00%
Bootstrap support for Q5KBR9 as seed ortholog is 100%.
Bootstrap support for B3L001 as seed ortholog is 100%.

Group of orthologs #830. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

Q5KEX5              	100.00%		B3L559              	100.00%
Bootstrap support for Q5KEX5 as seed ortholog is 100%.
Bootstrap support for B3L559 as seed ortholog is 100%.

Group of orthologs #831. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

Q5KL21              	100.00%		B3LD23              	100.00%
Bootstrap support for Q5KL21 as seed ortholog is 100%.
Bootstrap support for B3LD23 as seed ortholog is 100%.

Group of orthologs #832. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.knowlesi:90

Q5KLG3              	100.00%		B3LD77              	100.00%
Bootstrap support for Q5KLG3 as seed ortholog is 100%.
Bootstrap support for B3LD77 as seed ortholog is 100%.

Group of orthologs #833. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.knowlesi:89

Q5KLM7              	100.00%		B3L4F5              	100.00%
                    	       		B3L7Y8              	5.04%
Bootstrap support for Q5KLM7 as seed ortholog is 100%.
Bootstrap support for B3L4F5 as seed ortholog is 100%.

Group of orthologs #834. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.knowlesi:89

Q5K9N0              	100.00%		B3L4W5              	100.00%
Bootstrap support for Q5K9N0 as seed ortholog is 100%.
Bootstrap support for B3L4W5 as seed ortholog is 100%.

Group of orthologs #835. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.knowlesi:89

Q5K8L2              	100.00%		B3L7E6              	100.00%
Bootstrap support for Q5K8L2 as seed ortholog is 76%.
Bootstrap support for B3L7E6 as seed ortholog is 100%.

Group of orthologs #836. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.knowlesi:89

Q5K7W3              	100.00%		B3L9H8              	100.00%
Bootstrap support for Q5K7W3 as seed ortholog is 100%.
Bootstrap support for B3L9H8 as seed ortholog is 100%.

Group of orthologs #837. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.knowlesi:89

Q5KPF3              	100.00%		B3L098              	100.00%
Bootstrap support for Q5KPF3 as seed ortholog is 100%.
Bootstrap support for B3L098 as seed ortholog is 100%.

Group of orthologs #838. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.knowlesi:89

Q5KH59              	100.00%		B3L8T1              	100.00%
Bootstrap support for Q5KH59 as seed ortholog is 100%.
Bootstrap support for B3L8T1 as seed ortholog is 100%.

Group of orthologs #839. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.knowlesi:88

P0CO90              	100.00%		B3L594              	100.00%
Q5KGY4              	8.48%		
Bootstrap support for P0CO90 as seed ortholog is 100%.
Bootstrap support for B3L594 as seed ortholog is 100%.

Group of orthologs #840. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.knowlesi:9

P0CP46              	100.00%		B3L728              	100.00%
                    	       		B3LAR8              	28.94%
Bootstrap support for P0CP46 as seed ortholog is 85%.
Bootstrap support for B3L728 as seed ortholog is 85%.

Group of orthologs #841. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:26 P.knowlesi:87

Q5KDE0              	100.00%		B3L8U3              	100.00%
Q5KA61              	9.95%		
Bootstrap support for Q5KDE0 as seed ortholog is 80%.
Bootstrap support for B3L8U3 as seed ortholog is 100%.

Group of orthologs #842. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.knowlesi:87

Q5KIC8              	100.00%		B3L125              	100.00%
Bootstrap support for Q5KIC8 as seed ortholog is 100%.
Bootstrap support for B3L125 as seed ortholog is 100%.

Group of orthologs #843. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.knowlesi:38

Q5KLB1              	100.00%		B3KZI4              	100.00%
Bootstrap support for Q5KLB1 as seed ortholog is 100%.
Bootstrap support for B3KZI4 as seed ortholog is 78%.

Group of orthologs #844. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.knowlesi:46

Q5K8A6              	100.00%		B3LCN8              	100.00%
Bootstrap support for Q5K8A6 as seed ortholog is 100%.
Bootstrap support for B3LCN8 as seed ortholog is 99%.

Group of orthologs #845. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.knowlesi:87

Q5KFR0              	100.00%		B3L623              	100.00%
Bootstrap support for Q5KFR0 as seed ortholog is 100%.
Bootstrap support for B3L623 as seed ortholog is 100%.

Group of orthologs #846. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.knowlesi:87

Q5KDN1              	100.00%		B3L8P9              	100.00%
Bootstrap support for Q5KDN1 as seed ortholog is 100%.
Bootstrap support for B3L8P9 as seed ortholog is 100%.

Group of orthologs #847. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.knowlesi:87

Q5KM60              	100.00%		B3L6U3              	100.00%
Bootstrap support for Q5KM60 as seed ortholog is 100%.
Bootstrap support for B3L6U3 as seed ortholog is 100%.

Group of orthologs #848. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.knowlesi:86

Q5KAL3              	100.00%		B3L8Z3              	100.00%
Bootstrap support for Q5KAL3 as seed ortholog is 100%.
Bootstrap support for B3L8Z3 as seed ortholog is 100%.

Group of orthologs #849. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.knowlesi:86

Q5KQ34              	100.00%		B3L5F0              	100.00%
Bootstrap support for Q5KQ34 as seed ortholog is 100%.
Bootstrap support for B3L5F0 as seed ortholog is 100%.

Group of orthologs #850. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.knowlesi:85

Q5K7B2              	100.00%		B3L5D7              	100.00%
Bootstrap support for Q5K7B2 as seed ortholog is 100%.
Bootstrap support for B3L5D7 as seed ortholog is 100%.

Group of orthologs #851. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.knowlesi:11

Q5KEP7              	100.00%		B3KZ61              	100.00%
Bootstrap support for Q5KEP7 as seed ortholog is 100%.
Bootstrap support for B3KZ61 as seed ortholog is 63%.
Alternative seed ortholog is B3L5I2 (11 bits away from this cluster)

Group of orthologs #852. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.knowlesi:85

Q5KDS7              	100.00%		B3LBQ3              	100.00%
Bootstrap support for Q5KDS7 as seed ortholog is 100%.
Bootstrap support for B3LBQ3 as seed ortholog is 100%.

Group of orthologs #853. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.knowlesi:84

Q5KAW2              	100.00%		B3LAK7              	100.00%
Q5KIG3              	13.98%		
Bootstrap support for Q5KAW2 as seed ortholog is 100%.
Bootstrap support for B3LAK7 as seed ortholog is 100%.

Group of orthologs #854. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.knowlesi:84

P0CS46              	100.00%		B3LCU8              	100.00%
Bootstrap support for P0CS46 as seed ortholog is 100%.
Bootstrap support for B3LCU8 as seed ortholog is 100%.

Group of orthologs #855. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.knowlesi:84

Q5KEC0              	100.00%		B3L721              	100.00%
Bootstrap support for Q5KEC0 as seed ortholog is 100%.
Bootstrap support for B3L721 as seed ortholog is 100%.

Group of orthologs #856. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.knowlesi:84

Q5KGI4              	100.00%		B3L5S2              	100.00%
Bootstrap support for Q5KGI4 as seed ortholog is 100%.
Bootstrap support for B3L5S2 as seed ortholog is 100%.

Group of orthologs #857. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.knowlesi:84

Q5KMF3              	100.00%		B3L4Q8              	100.00%
Bootstrap support for Q5KMF3 as seed ortholog is 100%.
Bootstrap support for B3L4Q8 as seed ortholog is 100%.

Group of orthologs #858. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.knowlesi:83

Q5KB06              	100.00%		B3L2C7              	100.00%
Bootstrap support for Q5KB06 as seed ortholog is 100%.
Bootstrap support for B3L2C7 as seed ortholog is 100%.

Group of orthologs #859. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.knowlesi:83

P0CR54              	100.00%		B3LD76              	100.00%
Bootstrap support for P0CR54 as seed ortholog is 100%.
Bootstrap support for B3LD76 as seed ortholog is 100%.

Group of orthologs #860. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.knowlesi:83

Q5K8L7              	100.00%		B3LD99              	100.00%
Bootstrap support for Q5K8L7 as seed ortholog is 100%.
Bootstrap support for B3LD99 as seed ortholog is 100%.

Group of orthologs #861. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.knowlesi:83

Q5KAL7              	100.00%		B3LD31              	100.00%
Bootstrap support for Q5KAL7 as seed ortholog is 100%.
Bootstrap support for B3LD31 as seed ortholog is 100%.

Group of orthologs #862. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.knowlesi:83

Q5KGY5              	100.00%		B3LAG6              	100.00%
Bootstrap support for Q5KGY5 as seed ortholog is 100%.
Bootstrap support for B3LAG6 as seed ortholog is 100%.

Group of orthologs #863. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:12 P.knowlesi:82

P0CS44              	100.00%		B3L6G1              	100.00%
Bootstrap support for P0CS44 as seed ortholog is 82%.
Bootstrap support for B3L6G1 as seed ortholog is 100%.

Group of orthologs #864. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.knowlesi:82

Q5K9E5              	100.00%		B3L551              	100.00%
Bootstrap support for Q5K9E5 as seed ortholog is 100%.
Bootstrap support for B3L551 as seed ortholog is 100%.

Group of orthologs #865. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.knowlesi:82

Q5K9C2              	100.00%		B3L7A8              	100.00%
Bootstrap support for Q5K9C2 as seed ortholog is 100%.
Bootstrap support for B3L7A8 as seed ortholog is 100%.

Group of orthologs #866. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.knowlesi:82

Q5KF95              	100.00%		B3L6A4              	100.00%
Bootstrap support for Q5KF95 as seed ortholog is 100%.
Bootstrap support for B3L6A4 as seed ortholog is 100%.

Group of orthologs #867. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.knowlesi:82

Q5KNI7              	100.00%		B3L4I3              	100.00%
Bootstrap support for Q5KNI7 as seed ortholog is 100%.
Bootstrap support for B3L4I3 as seed ortholog is 100%.

Group of orthologs #868. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.knowlesi:82

Q5KFN4              	100.00%		B3LC41              	100.00%
Bootstrap support for Q5KFN4 as seed ortholog is 100%.
Bootstrap support for B3LC41 as seed ortholog is 100%.

Group of orthologs #869. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:81

Q5KF11              	100.00%		B3KZS5              	100.00%
Bootstrap support for Q5KF11 as seed ortholog is 100%.
Bootstrap support for B3KZS5 as seed ortholog is 100%.

Group of orthologs #870. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:81

Q5KIV2              	100.00%		B3L090              	100.00%
Bootstrap support for Q5KIV2 as seed ortholog is 100%.
Bootstrap support for B3L090 as seed ortholog is 100%.

Group of orthologs #871. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:81

Q5KIG9              	100.00%		B3L1L8              	100.00%
Bootstrap support for Q5KIG9 as seed ortholog is 100%.
Bootstrap support for B3L1L8 as seed ortholog is 100%.

Group of orthologs #872. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:81

Q5KBD5              	100.00%		B3L891              	100.00%
Bootstrap support for Q5KBD5 as seed ortholog is 100%.
Bootstrap support for B3L891 as seed ortholog is 100%.

Group of orthologs #873. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:81

Q5KAB9              	100.00%		B3LA74              	100.00%
Bootstrap support for Q5KAB9 as seed ortholog is 100%.
Bootstrap support for B3LA74 as seed ortholog is 100%.

Group of orthologs #874. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.knowlesi:81

Q5KPB1              	100.00%		B3LB63              	100.00%
Bootstrap support for Q5KPB1 as seed ortholog is 100%.
Bootstrap support for B3LB63 as seed ortholog is 100%.

Group of orthologs #875. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.knowlesi:80

P0CO24              	100.00%		B3LB17              	100.00%
                    	       		B3L1C1              	25.76%
Bootstrap support for P0CO24 as seed ortholog is 100%.
Bootstrap support for B3LB17 as seed ortholog is 100%.

Group of orthologs #876. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.knowlesi:80

Q5KNT2              	100.00%		B3L0Z6              	100.00%
Bootstrap support for Q5KNT2 as seed ortholog is 100%.
Bootstrap support for B3L0Z6 as seed ortholog is 100%.

Group of orthologs #877. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.knowlesi:80

Q5KHJ3              	100.00%		B3L9F1              	100.00%
Bootstrap support for Q5KHJ3 as seed ortholog is 100%.
Bootstrap support for B3L9F1 as seed ortholog is 100%.

Group of orthologs #878. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.knowlesi:79

P0CP72              	100.00%		B3KZ28              	100.00%
Bootstrap support for P0CP72 as seed ortholog is 100%.
Bootstrap support for B3KZ28 as seed ortholog is 100%.

Group of orthologs #879. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.knowlesi:79

P0CO84              	100.00%		B3L2K1              	100.00%
Bootstrap support for P0CO84 as seed ortholog is 80%.
Bootstrap support for B3L2K1 as seed ortholog is 100%.

Group of orthologs #880. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.knowlesi:79

P0CS10              	100.00%		B3L4Z4              	100.00%
Bootstrap support for P0CS10 as seed ortholog is 100%.
Bootstrap support for B3L4Z4 as seed ortholog is 100%.

Group of orthologs #881. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.knowlesi:79

Q5KEF1              	100.00%		B3L0T6              	100.00%
Bootstrap support for Q5KEF1 as seed ortholog is 100%.
Bootstrap support for B3L0T6 as seed ortholog is 100%.

Group of orthologs #882. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.knowlesi:79

Q5KIY1              	100.00%		B3L4D3              	100.00%
Bootstrap support for Q5KIY1 as seed ortholog is 100%.
Bootstrap support for B3L4D3 as seed ortholog is 100%.

Group of orthologs #883. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.knowlesi:79

Q5KKD6              	100.00%		B3L766              	100.00%
Bootstrap support for Q5KKD6 as seed ortholog is 100%.
Bootstrap support for B3L766 as seed ortholog is 100%.

Group of orthologs #884. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.knowlesi:78

Q5K9V6              	100.00%		B3LD61              	100.00%
Bootstrap support for Q5K9V6 as seed ortholog is 100%.
Bootstrap support for B3LD61 as seed ortholog is 100%.

Group of orthologs #885. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.knowlesi:78

Q5KLP4              	100.00%		B3L5X8              	100.00%
Bootstrap support for Q5KLP4 as seed ortholog is 100%.
Bootstrap support for B3L5X8 as seed ortholog is 100%.

Group of orthologs #886. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.knowlesi:78

Q5KPJ3              	100.00%		B3L8I8              	100.00%
Bootstrap support for Q5KPJ3 as seed ortholog is 100%.
Bootstrap support for B3L8I8 as seed ortholog is 100%.

Group of orthologs #887. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.knowlesi:78

Q5KPH1              	100.00%		B3L9M9              	100.00%
Bootstrap support for Q5KPH1 as seed ortholog is 100%.
Bootstrap support for B3L9M9 as seed ortholog is 100%.

Group of orthologs #888. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

P0CM06              	100.00%		B3L707              	100.00%
Bootstrap support for P0CM06 as seed ortholog is 100%.
Bootstrap support for B3L707 as seed ortholog is 100%.

Group of orthologs #889. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

P0CR96              	100.00%		B3L6T3              	100.00%
Bootstrap support for P0CR96 as seed ortholog is 100%.
Bootstrap support for B3L6T3 as seed ortholog is 100%.

Group of orthologs #890. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

Q5KA31              	100.00%		B3L467              	100.00%
Bootstrap support for Q5KA31 as seed ortholog is 100%.
Bootstrap support for B3L467 as seed ortholog is 100%.

Group of orthologs #891. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

Q5KAA6              	100.00%		B3L8R0              	100.00%
Bootstrap support for Q5KAA6 as seed ortholog is 100%.
Bootstrap support for B3L8R0 as seed ortholog is 100%.

Group of orthologs #892. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

Q5KK39              	100.00%		B3L880              	100.00%
Bootstrap support for Q5KK39 as seed ortholog is 100%.
Bootstrap support for B3L880 as seed ortholog is 100%.

Group of orthologs #893. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

Q5KH86              	100.00%		B3LAV5              	100.00%
Bootstrap support for Q5KH86 as seed ortholog is 100%.
Bootstrap support for B3LAV5 as seed ortholog is 100%.

Group of orthologs #894. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.knowlesi:77

Q5KL57              	100.00%		B3LBN4              	100.00%
Bootstrap support for Q5KL57 as seed ortholog is 100%.
Bootstrap support for B3LBN4 as seed ortholog is 100%.

Group of orthologs #895. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.knowlesi:32

Q5KDF7              	100.00%		B3LC98              	100.00%
Q5KN20              	13.74%		
Q5KI63              	6.62%		
Bootstrap support for Q5KDF7 as seed ortholog is 100%.
Bootstrap support for B3LC98 as seed ortholog is 48%.
Alternative seed ortholog is B3KZJ2 (32 bits away from this cluster)

Group of orthologs #896. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.knowlesi:76

Q5KA73              	100.00%		B3L695              	100.00%
                    	       		B3L1Y3              	16.09%
Bootstrap support for Q5KA73 as seed ortholog is 100%.
Bootstrap support for B3L695 as seed ortholog is 100%.

Group of orthologs #897. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.knowlesi:76

P0CR24              	100.00%		B3L8Y5              	100.00%
Bootstrap support for P0CR24 as seed ortholog is 100%.
Bootstrap support for B3L8Y5 as seed ortholog is 100%.

Group of orthologs #898. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.knowlesi:76

Q5KC59              	100.00%		B3LA35              	100.00%
Bootstrap support for Q5KC59 as seed ortholog is 100%.
Bootstrap support for B3LA35 as seed ortholog is 100%.

Group of orthologs #899. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.knowlesi:76

Q5KL85              	100.00%		B3L6L2              	100.00%
Bootstrap support for Q5KL85 as seed ortholog is 100%.
Bootstrap support for B3L6L2 as seed ortholog is 100%.

Group of orthologs #900. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.knowlesi:75

Q5KLD3              	100.00%		B3L1H2              	100.00%
Bootstrap support for Q5KLD3 as seed ortholog is 100%.
Bootstrap support for B3L1H2 as seed ortholog is 100%.

Group of orthologs #901. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.knowlesi:75

Q5KNS3              	100.00%		B3L7X7              	100.00%
Bootstrap support for Q5KNS3 as seed ortholog is 100%.
Bootstrap support for B3L7X7 as seed ortholog is 100%.

Group of orthologs #902. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:28

Q5KIS6              	100.00%		B3L6N9              	100.00%
Q5KPK3              	7.08%		
Bootstrap support for Q5KIS6 as seed ortholog is 100%.
Bootstrap support for B3L6N9 as seed ortholog is 82%.

Group of orthologs #903. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:74

Q5KN28              	100.00%		B3LD88              	100.00%
Q5KG67              	6.28%		
Bootstrap support for Q5KN28 as seed ortholog is 100%.
Bootstrap support for B3LD88 as seed ortholog is 100%.

Group of orthologs #904. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:74

P0CR68              	100.00%		B3L262              	100.00%
Bootstrap support for P0CR68 as seed ortholog is 100%.
Bootstrap support for B3L262 as seed ortholog is 100%.

Group of orthologs #905. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:74

Q5KQ14              	100.00%		B3L953              	100.00%
Bootstrap support for Q5KQ14 as seed ortholog is 100%.
Bootstrap support for B3L953 as seed ortholog is 100%.

Group of orthologs #906. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.knowlesi:74

Q5KPI6              	100.00%		B3LBE6              	100.00%
Bootstrap support for Q5KPI6 as seed ortholog is 100%.
Bootstrap support for B3LBE6 as seed ortholog is 100%.

Group of orthologs #907. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.knowlesi:73

Q5K9E2              	100.00%		B3L3U8              	100.00%
Bootstrap support for Q5K9E2 as seed ortholog is 100%.
Bootstrap support for B3L3U8 as seed ortholog is 100%.

Group of orthologs #908. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.knowlesi:73

Q5KDR3              	100.00%		B3L0T5              	100.00%
Bootstrap support for Q5KDR3 as seed ortholog is 100%.
Bootstrap support for B3L0T5 as seed ortholog is 100%.

Group of orthologs #909. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.knowlesi:73

Q5KDZ6              	100.00%		B3L6A9              	100.00%
Bootstrap support for Q5KDZ6 as seed ortholog is 97%.
Bootstrap support for B3L6A9 as seed ortholog is 100%.

Group of orthologs #910. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.knowlesi:73

Q5KHA3              	100.00%		B3L8R6              	100.00%
Bootstrap support for Q5KHA3 as seed ortholog is 100%.
Bootstrap support for B3L8R6 as seed ortholog is 100%.

Group of orthologs #911. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

P0CM10              	100.00%		B3L0N9              	100.00%
Bootstrap support for P0CM10 as seed ortholog is 100%.
Bootstrap support for B3L0N9 as seed ortholog is 100%.

Group of orthologs #912. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5K9X5              	100.00%		B3L2I4              	100.00%
Bootstrap support for Q5K9X5 as seed ortholog is 100%.
Bootstrap support for B3L2I4 as seed ortholog is 100%.

Group of orthologs #913. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

P0CP06              	100.00%		B3L7J1              	100.00%
Bootstrap support for P0CP06 as seed ortholog is 100%.
Bootstrap support for B3L7J1 as seed ortholog is 100%.

Group of orthologs #914. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KAI3              	100.00%		B3L4J9              	100.00%
Bootstrap support for Q5KAI3 as seed ortholog is 100%.
Bootstrap support for B3L4J9 as seed ortholog is 100%.

Group of orthologs #915. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KI51              	100.00%		B3L5P5              	100.00%
Bootstrap support for Q5KI51 as seed ortholog is 100%.
Bootstrap support for B3L5P5 as seed ortholog is 100%.

Group of orthologs #916. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KHV8              	100.00%		B3L5Z2              	100.00%
Bootstrap support for Q5KHV8 as seed ortholog is 100%.
Bootstrap support for B3L5Z2 as seed ortholog is 100%.

Group of orthologs #917. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KFB3              	100.00%		B3LCH0              	100.00%
Bootstrap support for Q5KFB3 as seed ortholog is 100%.
Bootstrap support for B3LCH0 as seed ortholog is 100%.

Group of orthologs #918. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KJX3              	100.00%		B3L8I3              	100.00%
Bootstrap support for Q5KJX3 as seed ortholog is 100%.
Bootstrap support for B3L8I3 as seed ortholog is 100%.

Group of orthologs #919. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KK45              	100.00%		B3L8F0              	100.00%
Bootstrap support for Q5KK45 as seed ortholog is 100%.
Bootstrap support for B3L8F0 as seed ortholog is 100%.

Group of orthologs #920. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KLI5              	100.00%		B3LBQ8              	100.00%
Bootstrap support for Q5KLI5 as seed ortholog is 100%.
Bootstrap support for B3LBQ8 as seed ortholog is 100%.

Group of orthologs #921. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.knowlesi:72

Q5KM67              	100.00%		B3LCE6              	100.00%
Bootstrap support for Q5KM67 as seed ortholog is 100%.
Bootstrap support for B3LCE6 as seed ortholog is 100%.

Group of orthologs #922. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5K719              	100.00%		B3LCA6              	100.00%
                    	       		B3LBQ4              	11.95%
Bootstrap support for Q5K719 as seed ortholog is 100%.
Bootstrap support for B3LCA6 as seed ortholog is 100%.

Group of orthologs #923. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5KKD1              	100.00%		B3L3E3              	100.00%
                    	       		B3L409              	7.63%
Bootstrap support for Q5KKD1 as seed ortholog is 100%.
Bootstrap support for B3L3E3 as seed ortholog is 100%.

Group of orthologs #924. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5K7I7              	100.00%		B3L307              	100.00%
Bootstrap support for Q5K7I7 as seed ortholog is 100%.
Bootstrap support for B3L307 as seed ortholog is 100%.

Group of orthologs #925. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5KLV4              	100.00%		B3L2G3              	100.00%
Bootstrap support for Q5KLV4 as seed ortholog is 100%.
Bootstrap support for B3L2G3 as seed ortholog is 100%.

Group of orthologs #926. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5KNR2              	100.00%		B3L5N5              	100.00%
Bootstrap support for Q5KNR2 as seed ortholog is 100%.
Bootstrap support for B3L5N5 as seed ortholog is 100%.

Group of orthologs #927. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5KK73              	100.00%		B3LAP8              	100.00%
Bootstrap support for Q5KK73 as seed ortholog is 100%.
Bootstrap support for B3LAP8 as seed ortholog is 100%.

Group of orthologs #928. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.knowlesi:71

Q5KLT0              	100.00%		B3LCH8              	100.00%
Bootstrap support for Q5KLT0 as seed ortholog is 100%.
Bootstrap support for B3LCH8 as seed ortholog is 100%.

Group of orthologs #929. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.knowlesi:70

Q5KJP6              	100.00%		B3L0H4              	100.00%
Bootstrap support for Q5KJP6 as seed ortholog is 100%.
Bootstrap support for B3L0H4 as seed ortholog is 100%.

Group of orthologs #930. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.knowlesi:70

Q5KIK2              	100.00%		B3LBN2              	100.00%
Bootstrap support for Q5KIK2 as seed ortholog is 100%.
Bootstrap support for B3LBN2 as seed ortholog is 100%.

Group of orthologs #931. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.knowlesi:21

Q5KI30              	100.00%		B3L0R8              	100.00%
Q5KI56              	10.47%		
Bootstrap support for Q5KI30 as seed ortholog is 100%.
Bootstrap support for B3L0R8 as seed ortholog is 86%.

Group of orthologs #932. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.knowlesi:69

P0CR36              	100.00%		B3L025              	100.00%
Bootstrap support for P0CR36 as seed ortholog is 68%.
Alternative seed ortholog is Q5KML8 (21 bits away from this cluster)
Bootstrap support for B3L025 as seed ortholog is 100%.

Group of orthologs #933. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.knowlesi:69

Q5KIB6              	100.00%		B3L245              	100.00%
Bootstrap support for Q5KIB6 as seed ortholog is 100%.
Bootstrap support for B3L245 as seed ortholog is 100%.

Group of orthologs #934. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.knowlesi:69

Q5KN63              	100.00%		B3L194              	100.00%
Bootstrap support for Q5KN63 as seed ortholog is 100%.
Bootstrap support for B3L194 as seed ortholog is 100%.

Group of orthologs #935. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.knowlesi:69

Q5KJW8              	100.00%		B3LAV0              	100.00%
Bootstrap support for Q5KJW8 as seed ortholog is 100%.
Bootstrap support for B3LAV0 as seed ortholog is 100%.

Group of orthologs #936. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.knowlesi:69

Q5KMZ6              	100.00%		B3L8J4              	100.00%
Bootstrap support for Q5KMZ6 as seed ortholog is 100%.
Bootstrap support for B3L8J4 as seed ortholog is 100%.

Group of orthologs #937. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.knowlesi:68

Q5KBG4              	100.00%		B3LCD3              	100.00%
Bootstrap support for Q5KBG4 as seed ortholog is 100%.
Bootstrap support for B3LCD3 as seed ortholog is 100%.

Group of orthologs #938. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.knowlesi:68

Q5KP48              	100.00%		B3L7G4              	100.00%
Bootstrap support for Q5KP48 as seed ortholog is 100%.
Bootstrap support for B3L7G4 as seed ortholog is 100%.

Group of orthologs #939. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.knowlesi:67

Q5K788              	100.00%		B3L053              	100.00%
Bootstrap support for Q5K788 as seed ortholog is 100%.
Bootstrap support for B3L053 as seed ortholog is 100%.

Group of orthologs #940. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.knowlesi:67

Q5KA20              	100.00%		B3L168              	100.00%
Bootstrap support for Q5KA20 as seed ortholog is 100%.
Bootstrap support for B3L168 as seed ortholog is 100%.

Group of orthologs #941. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.knowlesi:67

Q5K900              	100.00%		B3LB79              	100.00%
Bootstrap support for Q5K900 as seed ortholog is 100%.
Bootstrap support for B3LB79 as seed ortholog is 100%.

Group of orthologs #942. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.knowlesi:67

Q5KKH4              	100.00%		B3L0Z8              	100.00%
Bootstrap support for Q5KKH4 as seed ortholog is 100%.
Bootstrap support for B3L0Z8 as seed ortholog is 100%.

Group of orthologs #943. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.knowlesi:23

Q5KMK6              	100.00%		B3LAK8              	100.00%
Bootstrap support for Q5KMK6 as seed ortholog is 100%.
Bootstrap support for B3LAK8 as seed ortholog is 95%.

Group of orthologs #944. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.knowlesi:66

Q5K970              	100.00%		B3LA19              	100.00%
Bootstrap support for Q5K970 as seed ortholog is 100%.
Bootstrap support for B3LA19 as seed ortholog is 100%.

Group of orthologs #945. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.knowlesi:66

Q5KKV3              	100.00%		B3L105              	100.00%
Bootstrap support for Q5KKV3 as seed ortholog is 100%.
Bootstrap support for B3L105 as seed ortholog is 100%.

Group of orthologs #946. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.knowlesi:65

F5HFW5              	100.00%		B3LC69              	100.00%
Bootstrap support for F5HFW5 as seed ortholog is 100%.
Bootstrap support for B3LC69 as seed ortholog is 100%.

Group of orthologs #947. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.knowlesi:13

Q5KIP7              	100.00%		B3L1B3              	100.00%
Bootstrap support for Q5KIP7 as seed ortholog is 100%.
Bootstrap support for B3L1B3 as seed ortholog is 63%.
Alternative seed ortholog is B3KZA0 (13 bits away from this cluster)

Group of orthologs #948. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.knowlesi:13

Q5KGD0              	100.00%		B3L636              	100.00%
Bootstrap support for Q5KGD0 as seed ortholog is 100%.
Bootstrap support for B3L636 as seed ortholog is 76%.

Group of orthologs #949. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.knowlesi:64

Q5KCX6              	100.00%		B3L0P7              	100.00%
Bootstrap support for Q5KCX6 as seed ortholog is 100%.
Bootstrap support for B3L0P7 as seed ortholog is 100%.

Group of orthologs #950. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.knowlesi:64

Q5KFF3              	100.00%		B3KZH0              	100.00%
Bootstrap support for Q5KFF3 as seed ortholog is 100%.
Bootstrap support for B3KZH0 as seed ortholog is 100%.

Group of orthologs #951. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.knowlesi:64

Q5K9W5              	100.00%		B3L8Z1              	100.00%
Bootstrap support for Q5K9W5 as seed ortholog is 100%.
Bootstrap support for B3L8Z1 as seed ortholog is 100%.

Group of orthologs #952. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.knowlesi:64

Q5KPM7              	100.00%		B3L0D3              	100.00%
Bootstrap support for Q5KPM7 as seed ortholog is 100%.
Bootstrap support for B3L0D3 as seed ortholog is 100%.

Group of orthologs #953. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.knowlesi:64

Q5KFM1              	100.00%		B3LCX5              	100.00%
Bootstrap support for Q5KFM1 as seed ortholog is 100%.
Bootstrap support for B3LCX5 as seed ortholog is 100%.

Group of orthologs #954. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:62

Q5KFH8              	100.00%		B3L6X2              	100.00%
Bootstrap support for Q5KFH8 as seed ortholog is 100%.
Bootstrap support for B3L6X2 as seed ortholog is 100%.

Group of orthologs #955. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:62

Q5KN27              	100.00%		B3L0G4              	100.00%
Bootstrap support for Q5KN27 as seed ortholog is 100%.
Bootstrap support for B3L0G4 as seed ortholog is 100%.

Group of orthologs #956. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:62

Q5KME4              	100.00%		B3L379              	100.00%
Bootstrap support for Q5KME4 as seed ortholog is 100%.
Bootstrap support for B3L379 as seed ortholog is 100%.

Group of orthologs #957. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:62

Q5KIE2              	100.00%		B3LBR2              	100.00%
Bootstrap support for Q5KIE2 as seed ortholog is 100%.
Bootstrap support for B3LBR2 as seed ortholog is 100%.

Group of orthologs #958. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.knowlesi:62

Q5KIT8              	100.00%		B3LBG4              	100.00%
Bootstrap support for Q5KIT8 as seed ortholog is 100%.
Bootstrap support for B3LBG4 as seed ortholog is 100%.

Group of orthologs #959. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.knowlesi:61

P0CR48              	100.00%		B3L0U7              	100.00%
Bootstrap support for P0CR48 as seed ortholog is 100%.
Bootstrap support for B3L0U7 as seed ortholog is 100%.

Group of orthologs #960. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.knowlesi:61

Q5K8K6              	100.00%		B3L5I9              	100.00%
Bootstrap support for Q5K8K6 as seed ortholog is 100%.
Bootstrap support for B3L5I9 as seed ortholog is 100%.

Group of orthologs #961. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.knowlesi:61

Q5K7S6              	100.00%		B3LCA9              	100.00%
Bootstrap support for Q5K7S6 as seed ortholog is 100%.
Bootstrap support for B3LCA9 as seed ortholog is 100%.

Group of orthologs #962. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.knowlesi:61

Q5KNL8              	100.00%		B3LAR6              	100.00%
Bootstrap support for Q5KNL8 as seed ortholog is 100%.
Bootstrap support for B3LAR6 as seed ortholog is 100%.

Group of orthologs #963. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.knowlesi:60

Q5KL07              	100.00%		B3L2S1              	100.00%
Bootstrap support for Q5KL07 as seed ortholog is 100%.
Bootstrap support for B3L2S1 as seed ortholog is 100%.

Group of orthologs #964. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.knowlesi:60

Q5KIV8              	100.00%		B3L9P2              	100.00%
Bootstrap support for Q5KIV8 as seed ortholog is 100%.
Bootstrap support for B3L9P2 as seed ortholog is 100%.

Group of orthologs #965. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:59

P0CR88              	100.00%		B3L7D3              	100.00%
Bootstrap support for P0CR88 as seed ortholog is 100%.
Bootstrap support for B3L7D3 as seed ortholog is 100%.

Group of orthologs #966. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:59

P0CN70              	100.00%		B3L8X9              	100.00%
Bootstrap support for P0CN70 as seed ortholog is 100%.
Bootstrap support for B3L8X9 as seed ortholog is 100%.

Group of orthologs #967. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:59

Q5KK46              	100.00%		B3KZ04              	100.00%
Bootstrap support for Q5KK46 as seed ortholog is 100%.
Bootstrap support for B3KZ04 as seed ortholog is 100%.

Group of orthologs #968. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:59

Q5KDB8              	100.00%		B3L8D6              	100.00%
Bootstrap support for Q5KDB8 as seed ortholog is 100%.
Bootstrap support for B3L8D6 as seed ortholog is 100%.

Group of orthologs #969. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:59

Q5KC40              	100.00%		B3L9U1              	100.00%
Bootstrap support for Q5KC40 as seed ortholog is 100%.
Bootstrap support for B3L9U1 as seed ortholog is 100%.

Group of orthologs #970. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.knowlesi:59

Q5KPD3              	100.00%		B3L433              	100.00%
Bootstrap support for Q5KPD3 as seed ortholog is 100%.
Bootstrap support for B3L433 as seed ortholog is 100%.

Group of orthologs #971. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.knowlesi:58

Q5KG85              	100.00%		B3L6I7              	100.00%
Q5KG86              	63.79%		
Q5KMQ6              	6.44%		
Bootstrap support for Q5KG85 as seed ortholog is 100%.
Bootstrap support for B3L6I7 as seed ortholog is 100%.

Group of orthologs #972. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.knowlesi:58

P0CP08              	100.00%		B3LAD0              	100.00%
Bootstrap support for P0CP08 as seed ortholog is 100%.
Bootstrap support for B3LAD0 as seed ortholog is 100%.

Group of orthologs #973. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:10 P.knowlesi:58

Q5KBL5              	100.00%		B3LC22              	100.00%
Bootstrap support for Q5KBL5 as seed ortholog is 71%.
Alternative seed ortholog is Q5KPX4 (10 bits away from this cluster)
Bootstrap support for B3LC22 as seed ortholog is 100%.

Group of orthologs #974. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.knowlesi:57

Q5KK15              	100.00%		B3LAJ7              	100.00%
Q5KIX8              	7.48%		
Bootstrap support for Q5KK15 as seed ortholog is 100%.
Bootstrap support for B3LAJ7 as seed ortholog is 100%.

Group of orthologs #975. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.knowlesi:57

Q5KC84              	100.00%		B3KZS8              	100.00%
Bootstrap support for Q5KC84 as seed ortholog is 100%.
Bootstrap support for B3KZS8 as seed ortholog is 100%.

Group of orthologs #976. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.knowlesi:57

Q5KEC3              	100.00%		B3KZI5              	100.00%
Bootstrap support for Q5KEC3 as seed ortholog is 100%.
Bootstrap support for B3KZI5 as seed ortholog is 100%.

Group of orthologs #977. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.knowlesi:57

Q5KM45              	100.00%		B3L9Z6              	100.00%
Bootstrap support for Q5KM45 as seed ortholog is 100%.
Bootstrap support for B3L9Z6 as seed ortholog is 100%.

Group of orthologs #978. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.knowlesi:56

Q5KHU8              	100.00%		B3L159              	100.00%
Q5K8T0              	5.80%		
Bootstrap support for Q5KHU8 as seed ortholog is 100%.
Bootstrap support for B3L159 as seed ortholog is 100%.

Group of orthologs #979. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.knowlesi:56

Q5K8P8              	100.00%		B3L2U0              	100.00%
Bootstrap support for Q5K8P8 as seed ortholog is 100%.
Bootstrap support for B3L2U0 as seed ortholog is 100%.

Group of orthologs #980. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.knowlesi:56

Q5KL91              	100.00%		B3L9B6              	100.00%
Bootstrap support for Q5KL91 as seed ortholog is 100%.
Bootstrap support for B3L9B6 as seed ortholog is 100%.

Group of orthologs #981. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.knowlesi:55

Q5KQ41              	100.00%		B3LBV9              	100.00%
Q5KDT0              	5.20%		
Bootstrap support for Q5KQ41 as seed ortholog is 100%.
Bootstrap support for B3LBV9 as seed ortholog is 100%.

Group of orthologs #982. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.knowlesi:55

Q5K8B3              	100.00%		B3L583              	100.00%
Bootstrap support for Q5K8B3 as seed ortholog is 100%.
Bootstrap support for B3L583 as seed ortholog is 100%.

Group of orthologs #983. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.knowlesi:14

Q5K9G6              	100.00%		B3LBV3              	100.00%
Bootstrap support for Q5K9G6 as seed ortholog is 100%.
Bootstrap support for B3LBV3 as seed ortholog is 72%.
Alternative seed ortholog is B3L140 (14 bits away from this cluster)

Group of orthologs #984. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.knowlesi:54

Q5K7A1              	100.00%		B3L0T9              	100.00%
Q5KI02              	20.59%		B3LAB1              	12.48%
Q5KHX6              	20.59%		
Q5K886              	16.68%		
Q5KPG5              	16.03%		
Q5KNP3              	15.71%		
Q5KKU1              	15.17%		
Q5K875              	15.06%		
Q5K7L4              	14.30%		
Q5KHF5              	14.30%		
Q5KQ74              	14.19%		
Q5KA87              	13.98%		
Q5KC55              	13.65%		
Q5KBM4              	13.54%		
Q5K7F5              	13.22%		
Q5K9T2              	12.46%		
Q5KC83              	12.03%		
Q5KFK2              	12.03%		
Q5K9A2              	11.81%		
Q5KFK1              	11.70%		
Q5KNB7              	11.16%		
Q5KER3              	10.73%		
Q5KN93              	10.62%		
Q5KB76              	10.40%		
Q5KBE7              	10.29%		
Q5KFM8              	10.29%		
Q5KKS6              	10.08%		
Q5K928              	9.21%		
Q5K9X4              	8.34%		
Q5KEM4              	7.91%		
Q5KH82              	7.58%		
Q5KG03              	6.93%		
Q5KAT7              	6.93%		
Q5KEI1              	5.96%		
Q5KA09              	5.53%		
Bootstrap support for Q5K7A1 as seed ortholog is 100%.
Bootstrap support for B3L0T9 as seed ortholog is 100%.

Group of orthologs #985. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.knowlesi:53

Q5KCJ7              	100.00%		B3L3A5              	100.00%
Bootstrap support for Q5KCJ7 as seed ortholog is 100%.
Bootstrap support for B3L3A5 as seed ortholog is 100%.

Group of orthologs #986. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.knowlesi:53

Q5KFH6              	100.00%		B3L6W4              	100.00%
Bootstrap support for Q5KFH6 as seed ortholog is 100%.
Bootstrap support for B3L6W4 as seed ortholog is 100%.

Group of orthologs #987. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:52

P0CN88              	100.00%		B3KZ84              	100.00%
Bootstrap support for P0CN88 as seed ortholog is 100%.
Bootstrap support for B3KZ84 as seed ortholog is 100%.

Group of orthologs #988. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:52

Q5KCT7              	100.00%		B3L218              	100.00%
Bootstrap support for Q5KCT7 as seed ortholog is 100%.
Bootstrap support for B3L218 as seed ortholog is 100%.

Group of orthologs #989. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:52

Q5KE91              	100.00%		B3L160              	100.00%
Bootstrap support for Q5KE91 as seed ortholog is 100%.
Bootstrap support for B3L160 as seed ortholog is 100%.

Group of orthologs #990. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:52

Q5KEG9              	100.00%		B3L3N5              	100.00%
Bootstrap support for Q5KEG9 as seed ortholog is 100%.
Bootstrap support for B3L3N5 as seed ortholog is 100%.

Group of orthologs #991. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:52

Q5KLS9              	100.00%		B3L7N4              	100.00%
Bootstrap support for Q5KLS9 as seed ortholog is 100%.
Bootstrap support for B3L7N4 as seed ortholog is 100%.

Group of orthologs #992. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.knowlesi:52

Q5KMG9              	100.00%		B3L7J5              	100.00%
Bootstrap support for Q5KMG9 as seed ortholog is 100%.
Bootstrap support for B3L7J5 as seed ortholog is 100%.

Group of orthologs #993. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.knowlesi:51

Q5KM48              	100.00%		B3L0K9              	100.00%
Bootstrap support for Q5KM48 as seed ortholog is 100%.
Bootstrap support for B3L0K9 as seed ortholog is 100%.

Group of orthologs #994. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.knowlesi:51

Q5KLR0              	100.00%		B3LC25              	100.00%
Bootstrap support for Q5KLR0 as seed ortholog is 100%.
Bootstrap support for B3LC25 as seed ortholog is 100%.

Group of orthologs #995. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.knowlesi:50

Q5K6W9              	100.00%		B3L575              	100.00%
Bootstrap support for Q5K6W9 as seed ortholog is 100%.
Bootstrap support for B3L575 as seed ortholog is 100%.

Group of orthologs #996. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.knowlesi:50

Q5K823              	100.00%		B3L4X9              	100.00%
Bootstrap support for Q5K823 as seed ortholog is 100%.
Bootstrap support for B3L4X9 as seed ortholog is 100%.

Group of orthologs #997. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.knowlesi:50

P0CP62              	100.00%		B3LDB5              	100.00%
Bootstrap support for P0CP62 as seed ortholog is 100%.
Bootstrap support for B3LDB5 as seed ortholog is 100%.

Group of orthologs #998. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.knowlesi:50

Q5K8X7              	100.00%		B3LBJ2              	100.00%
Bootstrap support for Q5K8X7 as seed ortholog is 100%.
Bootstrap support for B3LBJ2 as seed ortholog is 100%.

Group of orthologs #999. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.knowlesi:50

Q5KCD7              	100.00%		B3L9S9              	100.00%
Bootstrap support for Q5KCD7 as seed ortholog is 100%.
Bootstrap support for B3L9S9 as seed ortholog is 100%.