###################################
174 groups of orthologs
205 in-paralogs from C.neoformans
183 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 822 bits
Score difference with first non-orthologous sequence - C.neoformans:555 C.trachomatis:718

Q5KPM2              	100.00%		O84022              	100.00%
Bootstrap support for Q5KPM2 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 742 bits
Score difference with first non-orthologous sequence - C.neoformans:742 C.trachomatis:742

Q5KF07              	100.00%		O84250              	100.00%
Bootstrap support for Q5KF07 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 686 bits
Score difference with first non-orthologous sequence - C.neoformans:55 C.trachomatis:144

Q5KPH0              	100.00%		O84115              	100.00%
Bootstrap support for Q5KPH0 as seed ortholog is 91%.
Bootstrap support for O84115 as seed ortholog is 99%.

Group of orthologs #4. Best score 666 bits
Score difference with first non-orthologous sequence - C.neoformans:114 C.trachomatis:666

Q5K8W5              	100.00%		P17821              	100.00%
Bootstrap support for Q5K8W5 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #5. Best score 585 bits
Score difference with first non-orthologous sequence - C.neoformans:585 C.trachomatis:585

P0CQ16              	100.00%		O84348              	100.00%
Bootstrap support for P0CQ16 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #6. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:446 C.trachomatis:364

Q5KLW7              	100.00%		P0C0Z7              	100.00%
Bootstrap support for Q5KLW7 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #7. Best score 532 bits
Score difference with first non-orthologous sequence - C.neoformans:532 C.trachomatis:532

Q5K8D2              	100.00%		O84067              	100.00%
Bootstrap support for Q5K8D2 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #8. Best score 522 bits
Score difference with first non-orthologous sequence - C.neoformans:522 C.trachomatis:522

Q5KMH0              	100.00%		O84057              	100.00%
Bootstrap support for Q5KMH0 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #9. Best score 520 bits
Score difference with first non-orthologous sequence - C.neoformans:307 C.trachomatis:520

P0CN32              	100.00%		O84444              	100.00%
Bootstrap support for P0CN32 as seed ortholog is 100%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #10. Best score 518 bits
Score difference with first non-orthologous sequence - C.neoformans:377 C.trachomatis:518

Q5KMF6              	100.00%		O84304              	100.00%
Bootstrap support for Q5KMF6 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #11. Best score 480 bits
Score difference with first non-orthologous sequence - C.neoformans:480 C.trachomatis:480

Q5KJ21              	100.00%		O84755              	100.00%
Q5K7P5              	10.43%		
Q5KHG5              	7.99%		
Bootstrap support for Q5KJ21 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 100%.

Group of orthologs #12. Best score 480 bits
Score difference with first non-orthologous sequence - C.neoformans:324 C.trachomatis:480

Q5KDQ7              	100.00%		P0CD71              	100.00%
Bootstrap support for Q5KDQ7 as seed ortholog is 100%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #13. Best score 462 bits
Score difference with first non-orthologous sequence - C.neoformans:462 C.trachomatis:462

Q5KF97              	100.00%		O84754              	100.00%
Bootstrap support for Q5KF97 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #14. Best score 462 bits
Score difference with first non-orthologous sequence - C.neoformans:462 C.trachomatis:462

Q5KGK1              	100.00%		O84834              	100.00%
Bootstrap support for Q5KGK1 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #15. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:460 C.trachomatis:460

Q5KKV6              	100.00%		O84863              	100.00%
Bootstrap support for Q5KKV6 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #16. Best score 459 bits
Score difference with first non-orthologous sequence - C.neoformans:459 C.trachomatis:459

Q5KMU3              	100.00%		O84585              	100.00%
Bootstrap support for Q5KMU3 as seed ortholog is 100%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #17. Best score 457 bits
Score difference with first non-orthologous sequence - C.neoformans:457 C.trachomatis:457

Q5K9R3              	100.00%		O84066              	100.00%
Bootstrap support for Q5K9R3 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #18. Best score 443 bits
Score difference with first non-orthologous sequence - C.neoformans:33 C.trachomatis:443

Q5KLI4              	100.00%		O84848              	100.00%
Bootstrap support for Q5KLI4 as seed ortholog is 77%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #19. Best score 399 bits
Score difference with first non-orthologous sequence - C.neoformans:399 C.trachomatis:399

Q5KLA1              	100.00%		Q59321              	100.00%
Bootstrap support for Q5KLA1 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #20. Best score 385 bits
Score difference with first non-orthologous sequence - C.neoformans:385 C.trachomatis:385

Q5KNJ3              	100.00%		O84172              	100.00%
Bootstrap support for Q5KNJ3 as seed ortholog is 100%.
Bootstrap support for O84172 as seed ortholog is 100%.

Group of orthologs #21. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:374 C.trachomatis:374

Q5KKT5              	100.00%		O84126              	100.00%
Bootstrap support for Q5KKT5 as seed ortholog is 100%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #22. Best score 364 bits
Score difference with first non-orthologous sequence - C.neoformans:220 C.trachomatis:364

Q5KNR0              	100.00%		O84098              	100.00%
Bootstrap support for Q5KNR0 as seed ortholog is 99%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #23. Best score 362 bits
Score difference with first non-orthologous sequence - C.neoformans:68 C.trachomatis:362

P0CN74              	100.00%		P0CE13              	100.00%
Bootstrap support for P0CN74 as seed ortholog is 97%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #24. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:263 C.trachomatis:359

Q5KGV5              	100.00%		O84310              	100.00%
Bootstrap support for Q5KGV5 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #25. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 C.trachomatis:356

Q5KLA7              	100.00%		O84591              	100.00%
Q5KG11              	20.96%		
Bootstrap support for Q5KLA7 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #26. Best score 335 bits
Score difference with first non-orthologous sequence - C.neoformans:335 C.trachomatis:335

Q5KJH7              	100.00%		O84614              	100.00%
Bootstrap support for Q5KJH7 as seed ortholog is 100%.
Bootstrap support for O84614 as seed ortholog is 100%.

Group of orthologs #27. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:332 C.trachomatis:332

Q5KFM3              	100.00%		O84101              	100.00%
Bootstrap support for Q5KFM3 as seed ortholog is 100%.
Bootstrap support for O84101 as seed ortholog is 100%.

Group of orthologs #28. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:154 C.trachomatis:327

Q5K8I1              	100.00%		O84248              	100.00%
Bootstrap support for Q5K8I1 as seed ortholog is 100%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #29. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:131 C.trachomatis:320

Q5KHN7              	100.00%		O84561              	100.00%
Bootstrap support for Q5KHN7 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #30. Best score 313 bits
Score difference with first non-orthologous sequence - C.neoformans:222 C.trachomatis:313

Q5KBB1              	100.00%		O84786              	100.00%
Bootstrap support for Q5KBB1 as seed ortholog is 99%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #31. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 C.trachomatis:312

Q5KE01              	100.00%		P0CD78              	100.00%
Bootstrap support for Q5KE01 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #32. Best score 308 bits
Score difference with first non-orthologous sequence - C.neoformans:308 C.trachomatis:308

Q5KI12              	100.00%		O84711              	100.00%
Bootstrap support for Q5KI12 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #33. Best score 306 bits
Score difference with first non-orthologous sequence - C.neoformans:306 C.trachomatis:306

Q5K9R5              	100.00%		O84451              	100.00%
Bootstrap support for Q5K9R5 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #34. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 C.trachomatis:302

Q5KII0              	100.00%		O84823              	100.00%
Bootstrap support for Q5KII0 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #35. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:184 C.trachomatis:297

Q5KI46              	100.00%		O84035              	100.00%
Bootstrap support for Q5KI46 as seed ortholog is 99%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #36. Best score 293 bits
Score difference with first non-orthologous sequence - C.neoformans:11 C.trachomatis:293

Q5K9J9              	100.00%		O84797              	100.00%
Bootstrap support for Q5K9J9 as seed ortholog is 57%.
Alternative seed ortholog is Q5K9A8 (11 bits away from this cluster)
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #37. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 C.trachomatis:292

Q5KE15              	100.00%		O84829              	100.00%
Bootstrap support for Q5KE15 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #38. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:150 C.trachomatis:291

Q5K9D3              	100.00%		O84546              	100.00%
Bootstrap support for Q5K9D3 as seed ortholog is 99%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #39. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 C.trachomatis:289

Q5KKG6              	100.00%		P0CE21              	100.00%
Bootstrap support for Q5KKG6 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #40. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:274 C.trachomatis:274

Q5KDP3              	100.00%		O84188              	100.00%
Bootstrap support for Q5KDP3 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #41. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 C.trachomatis:272

Q5KLU5              	100.00%		P0CD72              	100.00%
Bootstrap support for Q5KLU5 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #42. Best score 271 bits
Score difference with first non-orthologous sequence - C.neoformans:271 C.trachomatis:271

Q5KFV9              	100.00%		O84316              	100.00%
Q5KGG3              	16.67%		
Q5KIF6              	9.50%		
Bootstrap support for Q5KFV9 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #43. Best score 266 bits
Score difference with first non-orthologous sequence - C.neoformans:266 C.trachomatis:266

Q5KN95              	100.00%		O84828              	100.00%
Bootstrap support for Q5KN95 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #44. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:202 C.trachomatis:265

Q5KBW0              	100.00%		O84309              	100.00%
Bootstrap support for Q5KBW0 as seed ortholog is 100%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #45. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:191 C.trachomatis:261

Q5K952              	100.00%		O84315              	100.00%
Bootstrap support for Q5K952 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #46. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:168 C.trachomatis:110

Q5KIM3              	100.00%		O84249              	100.00%
Bootstrap support for Q5KIM3 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 99%.

Group of orthologs #47. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 C.trachomatis:74

Q5KMP3              	100.00%		O84058              	100.00%
Bootstrap support for Q5KMP3 as seed ortholog is 100%.
Bootstrap support for O84058 as seed ortholog is 97%.

Group of orthologs #48. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 C.trachomatis:255

Q5KC33              	100.00%		P0CE09              	100.00%
Q5KIB7              	19.71%		
Q5KEV8              	6.65%		
Bootstrap support for Q5KC33 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #49. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 C.trachomatis:248

Q5K8J5              	100.00%		O84698              	100.00%
Bootstrap support for Q5K8J5 as seed ortholog is 100%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #50. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 C.trachomatis:247

Q5KEG8              	100.00%		O84007              	100.00%
Bootstrap support for Q5KEG8 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #51. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 C.trachomatis:245

Q5KA36              	100.00%		O84065              	100.00%
Bootstrap support for Q5KA36 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #52. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 C.trachomatis:242

Q5K7X5              	100.00%		O84642              	100.00%
Q5K826              	56.54%		
Q5KH05              	7.37%		
Bootstrap support for Q5K7X5 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #53. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 C.trachomatis:242

Q5KAU8              	100.00%		O84439              	100.00%
Bootstrap support for Q5KAU8 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #54. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 C.trachomatis:237

Q5KMQ2              	100.00%		O84787              	100.00%
Bootstrap support for Q5KMQ2 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #55. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 C.trachomatis:235

Q5KJY4              	100.00%		O84094              	100.00%
Bootstrap support for Q5KJY4 as seed ortholog is 100%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #56. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 C.trachomatis:59

Q5K9P5              	100.00%		O84026              	100.00%
Bootstrap support for Q5K9P5 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 95%.

Group of orthologs #57. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 C.trachomatis:230

Q5KCY4              	100.00%		O84373              	100.00%
Bootstrap support for Q5KCY4 as seed ortholog is 100%.
Bootstrap support for O84373 as seed ortholog is 100%.

Group of orthologs #58. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 C.trachomatis:230

Q5KHX7              	100.00%		O84006              	100.00%
Bootstrap support for Q5KHX7 as seed ortholog is 100%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #59. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:133 C.trachomatis:225

Q5KBA0              	100.00%		O84596              	100.00%
Bootstrap support for Q5KBA0 as seed ortholog is 98%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #60. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:34 C.trachomatis:225

Q5KKS0              	100.00%		O84345              	100.00%
Bootstrap support for Q5KKS0 as seed ortholog is 80%.
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #61. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 C.trachomatis:224

Q5K8H1              	100.00%		O84812              	100.00%
Bootstrap support for Q5K8H1 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #62. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:156 C.trachomatis:220

Q5KAU0              	100.00%		O84352              	100.00%
Q5KJ82              	13.27%		
Bootstrap support for Q5KAU0 as seed ortholog is 99%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #63. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 C.trachomatis:220

P0CO58              	100.00%		O84562              	100.00%
Bootstrap support for P0CO58 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #64. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 C.trachomatis:220

Q5K6V0              	100.00%		O84360              	100.00%
Bootstrap support for Q5K6V0 as seed ortholog is 100%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #65. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 C.trachomatis:206

Q5KBS3              	100.00%		O84296              	100.00%
Bootstrap support for Q5KBS3 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #66. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:22 C.trachomatis:205

Q5KMV4              	100.00%		O84734              	100.00%
Bootstrap support for Q5KMV4 as seed ortholog is 70%.
Alternative seed ortholog is Q5KHS3 (22 bits away from this cluster)
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #67. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 C.trachomatis:66

Q5K726              	100.00%		O84712              	100.00%
Bootstrap support for Q5K726 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 99%.

Group of orthologs #68. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 C.trachomatis:196

Q5K8I0              	100.00%		O84423              	100.00%
Bootstrap support for Q5K8I0 as seed ortholog is 100%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #69. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 C.trachomatis:196

Q5KP99              	100.00%		O84638              	100.00%
Bootstrap support for Q5KP99 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #70. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 C.trachomatis:115

Q5KLT3              	100.00%		O84859              	100.00%
Bootstrap support for Q5KLT3 as seed ortholog is 100%.
Bootstrap support for O84859 as seed ortholog is 99%.

Group of orthologs #71. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 C.trachomatis:186

Q5K850              	100.00%		O84289              	100.00%
Bootstrap support for Q5K850 as seed ortholog is 100%.
Bootstrap support for O84289 as seed ortholog is 100%.

Group of orthologs #72. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:48 C.trachomatis:184

Q5K722              	100.00%		O84732              	100.00%
Bootstrap support for Q5K722 as seed ortholog is 84%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #73. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 C.trachomatis:181

P0CN82              	100.00%		O84874              	100.00%
Bootstrap support for P0CN82 as seed ortholog is 100%.
Bootstrap support for O84874 as seed ortholog is 100%.

Group of orthologs #74. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 C.trachomatis:175

Q5KCJ9              	100.00%		O84630              	100.00%
Bootstrap support for Q5KCJ9 as seed ortholog is 100%.
Bootstrap support for O84630 as seed ortholog is 100%.

Group of orthologs #75. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 C.trachomatis:175

Q5KG36              	100.00%		O84332              	100.00%
Bootstrap support for Q5KG36 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #76. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 C.trachomatis:174

Q5KGH1              	100.00%		O84028              	100.00%
Bootstrap support for Q5KGH1 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 100%.

Group of orthologs #77. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 C.trachomatis:172

Q5KND4              	100.00%		O84613              	100.00%
Bootstrap support for Q5KND4 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #78. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 C.trachomatis:169

Q5KG72              	100.00%		O84579              	100.00%
Bootstrap support for Q5KG72 as seed ortholog is 100%.
Bootstrap support for O84579 as seed ortholog is 100%.

Group of orthologs #79. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 C.trachomatis:168

P0CL92              	100.00%		O84266              	100.00%
Q5K8R8              	100.00%		
Q5KMG1              	100.00%		
Q5KCX7              	14.04%		
Bootstrap support for P0CL92 as seed ortholog is 100%.
Bootstrap support for Q5K8R8 as seed ortholog is 100%.
Bootstrap support for Q5KMG1 as seed ortholog is 100%.
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #80. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:30 C.trachomatis:168

Q5KFU0              	100.00%		O84676              	100.00%
                    	       		O84722              	11.82%
Bootstrap support for Q5KFU0 as seed ortholog is 81%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #81. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:72 C.trachomatis:163

Q5KES4              	100.00%		O84247              	100.00%
Bootstrap support for Q5KES4 as seed ortholog is 97%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #82. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 C.trachomatis:163

Q5KE92              	100.00%		O84460              	100.00%
Bootstrap support for Q5KE92 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #83. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 C.trachomatis:160

Q5KPK7              	100.00%		O84368              	100.00%
Bootstrap support for Q5KPK7 as seed ortholog is 100%.
Bootstrap support for O84368 as seed ortholog is 100%.

Group of orthologs #84. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:69 C.trachomatis:153

Q5KEB3              	100.00%		O84608              	100.00%
Bootstrap support for Q5KEB3 as seed ortholog is 99%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #85. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 C.trachomatis:45

Q5KHR6              	100.00%		O84260              	100.00%
Bootstrap support for Q5KHR6 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 65%.
Alternative seed ortholog is O84693 (45 bits away from this cluster)

Group of orthologs #86. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 C.trachomatis:149

Q5KQ30              	100.00%		O84109              	100.00%
Bootstrap support for Q5KQ30 as seed ortholog is 100%.
Bootstrap support for O84109 as seed ortholog is 100%.

Group of orthologs #87. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 C.trachomatis:148

Q5K9L8              	100.00%		O84835              	100.00%
Q5K9A9              	40.14%		
Bootstrap support for Q5K9L8 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #88. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:32 C.trachomatis:143

Q5KHX9              	100.00%		P0CD79              	100.00%
Bootstrap support for Q5KHX9 as seed ortholog is 85%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #89. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:90 C.trachomatis:140

Q5K6X0              	100.00%		P66370              	100.00%
Bootstrap support for Q5K6X0 as seed ortholog is 99%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #90. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 C.trachomatis:139

Q5KMY7              	100.00%		O84752              	100.00%
Bootstrap support for Q5KMY7 as seed ortholog is 100%.
Bootstrap support for O84752 as seed ortholog is 100%.

Group of orthologs #91. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 C.trachomatis:138

Q5KNF9              	100.00%		O84123              	100.00%
Bootstrap support for Q5KNF9 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #92. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:41 C.trachomatis:137

Q5KGY0              	100.00%		O84530              	100.00%
Bootstrap support for Q5KGY0 as seed ortholog is 83%.
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #93. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:2 C.trachomatis:136

Q5KPY2              	100.00%		P38004              	100.00%
Bootstrap support for Q5KPY2 as seed ortholog is 50%.
Alternative seed ortholog is Q5KLC5 (2 bits away from this cluster)
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #94. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 C.trachomatis:134

Q5KGQ8              	100.00%		O84533              	100.00%
Bootstrap support for Q5KGQ8 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #95. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 C.trachomatis:126

Q5KKZ0              	100.00%		O84096              	100.00%
Bootstrap support for Q5KKZ0 as seed ortholog is 100%.
Bootstrap support for O84096 as seed ortholog is 100%.

Group of orthologs #96. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 C.trachomatis:124

Q5KK71              	100.00%		O84619              	100.00%
Bootstrap support for Q5KK71 as seed ortholog is 100%.
Bootstrap support for O84619 as seed ortholog is 100%.

Group of orthologs #97. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 C.trachomatis:121

Q5KKM8              	100.00%		O84719              	100.00%
Q5KPY7              	37.23%		
Bootstrap support for Q5KKM8 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #98. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 C.trachomatis:119

Q5KFH8              	100.00%		O84492              	100.00%
Bootstrap support for Q5KFH8 as seed ortholog is 100%.
Bootstrap support for O84492 as seed ortholog is 100%.

Group of orthologs #99. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 C.trachomatis:116

Q5KGR6              	100.00%		O84508              	100.00%
Q5KAX0              	17.68%		
Bootstrap support for Q5KGR6 as seed ortholog is 100%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #100. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 C.trachomatis:116

Q5KFJ6              	100.00%		O84720              	100.00%
Bootstrap support for Q5KFJ6 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #101. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 C.trachomatis:116

Q5KMF3              	100.00%		O84321              	100.00%
Bootstrap support for Q5KMF3 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #102. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 C.trachomatis:115

Q5KAU9              	100.00%		O84649              	100.00%
Bootstrap support for Q5KAU9 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #103. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 C.trachomatis:114

Q5KHZ1              	100.00%		O84033              	100.00%
Bootstrap support for Q5KHZ1 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #104. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:23 C.trachomatis:111

P0CO42              	100.00%		O84130              	100.00%
Bootstrap support for P0CO42 as seed ortholog is 76%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #105. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 C.trachomatis:109

Q5KI17              	100.00%		O84831              	100.00%
Bootstrap support for Q5KI17 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #106. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:62 C.trachomatis:109

Q5KM48              	100.00%		O84127              	100.00%
Bootstrap support for Q5KM48 as seed ortholog is 99%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #107. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 C.trachomatis:106

Q5KA28              	100.00%		P55137              	100.00%
Bootstrap support for Q5KA28 as seed ortholog is 100%.
Bootstrap support for P55137 as seed ortholog is 100%.

Group of orthologs #108. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:24 C.trachomatis:106

Q5KFP5              	100.00%		O84212              	100.00%
Bootstrap support for Q5KFP5 as seed ortholog is 71%.
Alternative seed ortholog is Q5KBZ2 (24 bits away from this cluster)
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #109. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 C.trachomatis:105

Q5KPM4              	100.00%		O84782              	100.00%
Bootstrap support for Q5KPM4 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #110. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 C.trachomatis:102

Q5KI89              	100.00%		O84391              	100.00%
Bootstrap support for Q5KI89 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #111. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 C.trachomatis:101

Q5KIC8              	100.00%		O84456              	100.00%
Bootstrap support for Q5KIC8 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #112. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 C.trachomatis:100

Q5KE42              	100.00%		O84463              	100.00%
Bootstrap support for Q5KE42 as seed ortholog is 100%.
Bootstrap support for O84463 as seed ortholog is 100%.

Group of orthologs #113. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 C.trachomatis:97

Q5KGC2              	100.00%		O84535              	100.00%
Bootstrap support for Q5KGC2 as seed ortholog is 100%.
Bootstrap support for O84535 as seed ortholog is 100%.

Group of orthologs #114. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:12 C.trachomatis:95

Q5KAB8              	100.00%		O84843              	100.00%
Bootstrap support for Q5KAB8 as seed ortholog is 61%.
Alternative seed ortholog is Q5KJG7 (12 bits away from this cluster)
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #115. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 C.trachomatis:95

Q5KNV5              	100.00%		P0CD83              	100.00%
Bootstrap support for Q5KNV5 as seed ortholog is 100%.
Bootstrap support for P0CD83 as seed ortholog is 100%.

Group of orthologs #116. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 C.trachomatis:95

Q5KQ29              	100.00%		O84864              	100.00%
Bootstrap support for Q5KQ29 as seed ortholog is 100%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #117. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:8 C.trachomatis:93

Q5KFY5              	100.00%		O84200              	100.00%
Bootstrap support for Q5KFY5 as seed ortholog is 56%.
Alternative seed ortholog is P0CQ14 (8 bits away from this cluster)
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #118. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 C.trachomatis:93

Q5KJL2              	100.00%		O84410              	100.00%
Bootstrap support for Q5KJL2 as seed ortholog is 100%.
Bootstrap support for O84410 as seed ortholog is 100%.

Group of orthologs #119. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:24 C.trachomatis:90

Q5KJU6              	100.00%		P0CD81              	100.00%
Bootstrap support for Q5KJU6 as seed ortholog is 80%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #120. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:90 C.trachomatis:90

Q5KPX1              	100.00%		O84435              	100.00%
Bootstrap support for Q5KPX1 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #121. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 C.trachomatis:88

P0CR18              	100.00%		O84215              	100.00%
Bootstrap support for P0CR18 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #122. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 C.trachomatis:87

Q5KDQ4              	100.00%		P0CE01              	100.00%
Bootstrap support for Q5KDQ4 as seed ortholog is 100%.
Bootstrap support for P0CE01 as seed ortholog is 100%.

Group of orthologs #123. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 C.trachomatis:86

Q5K7S5              	100.00%		O84294              	100.00%
Bootstrap support for Q5K7S5 as seed ortholog is 100%.
Bootstrap support for O84294 as seed ortholog is 100%.

Group of orthologs #124. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 C.trachomatis:84

Q5KAX6              	100.00%		O84358              	100.00%
Bootstrap support for Q5KAX6 as seed ortholog is 100%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #125. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:22 C.trachomatis:81

Q5KFU2              	100.00%		O84851              	100.00%
Bootstrap support for Q5KFU2 as seed ortholog is 84%.
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #126. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 C.trachomatis:79

Q5KID2              	100.00%		O84189              	100.00%
Q5KGD2              	46.12%		
Bootstrap support for Q5KID2 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #127. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 C.trachomatis:79

Q5KI10              	100.00%		O84687              	100.00%
Bootstrap support for Q5KI10 as seed ortholog is 100%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #128. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 C.trachomatis:79

Q5KKG7              	100.00%		O84320              	100.00%
Bootstrap support for Q5KKG7 as seed ortholog is 100%.
Bootstrap support for O84320 as seed ortholog is 100%.

Group of orthologs #129. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 C.trachomatis:79

Q5KPB1              	100.00%		O84771              	100.00%
Bootstrap support for Q5KPB1 as seed ortholog is 100%.
Bootstrap support for O84771 as seed ortholog is 100%.

Group of orthologs #130. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 C.trachomatis:77

Q5KH50              	100.00%		O84599              	100.00%
Bootstrap support for Q5KH50 as seed ortholog is 100%.
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #131. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 C.trachomatis:76

Q5KF86              	100.00%		O84737              	100.00%
Bootstrap support for Q5KF86 as seed ortholog is 100%.
Bootstrap support for O84737 as seed ortholog is 100%.

Group of orthologs #132. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 C.trachomatis:75

Q5KCE8              	100.00%		O84338              	100.00%
Q5K796              	21.03%		
Q5KDX5              	15.26%		
Q5KLQ5              	8.26%		
Bootstrap support for Q5KCE8 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #133. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 C.trachomatis:75

Q5KKJ1              	100.00%		O84658              	100.00%
Q5KCW7              	20.80%		
Bootstrap support for Q5KKJ1 as seed ortholog is 100%.
Bootstrap support for O84658 as seed ortholog is 100%.

Group of orthologs #134. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:4 C.trachomatis:74

Q5KL07              	100.00%		O84544              	100.00%
Bootstrap support for Q5KL07 as seed ortholog is 56%.
Alternative seed ortholog is Q5KK55 (4 bits away from this cluster)
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #135. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:10 C.trachomatis:72

Q5K8M7              	100.00%		P0CE04              	100.00%
Bootstrap support for Q5K8M7 as seed ortholog is 63%.
Alternative seed ortholog is Q5KA46 (10 bits away from this cluster)
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #136. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 C.trachomatis:71

Q5K9H2              	100.00%		P66480              	100.00%
Bootstrap support for Q5K9H2 as seed ortholog is 100%.
Bootstrap support for P66480 as seed ortholog is 100%.

Group of orthologs #137. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 C.trachomatis:69

Q5KDI9              	100.00%		O84750              	100.00%
Bootstrap support for Q5KDI9 as seed ortholog is 100%.
Bootstrap support for O84750 as seed ortholog is 100%.

Group of orthologs #138. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 C.trachomatis:68

Q5KM57              	100.00%		O84415              	100.00%
                    	       		O84710              	11.33%
Bootstrap support for Q5KM57 as seed ortholog is 100%.
Bootstrap support for O84415 as seed ortholog is 100%.

Group of orthologs #139. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 C.trachomatis:68

Q5KPD2              	100.00%		O84779              	100.00%
Bootstrap support for Q5KPD2 as seed ortholog is 100%.
Bootstrap support for O84779 as seed ortholog is 100%.

Group of orthologs #140. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 C.trachomatis:66

Q5KFT0              	100.00%		P0CE03              	100.00%
Bootstrap support for Q5KFT0 as seed ortholog is 100%.
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #141. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 C.trachomatis:13

Q5K9Q9              	100.00%		O84154              	100.00%
                    	       		O84660              	9.12%
                    	       		O84421              	5.90%
Bootstrap support for Q5K9Q9 as seed ortholog is 100%.
Bootstrap support for O84154 as seed ortholog is 67%.
Alternative seed ortholog is O84691 (13 bits away from this cluster)

Group of orthologs #142. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 C.trachomatis:64

Q5KC95              	100.00%		O84087              	100.00%
Bootstrap support for Q5KC95 as seed ortholog is 100%.
Bootstrap support for O84087 as seed ortholog is 100%.

Group of orthologs #143. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 C.trachomatis:64

Q5KJJ0              	100.00%		O84027              	100.00%
Bootstrap support for Q5KJJ0 as seed ortholog is 100%.
Bootstrap support for O84027 as seed ortholog is 100%.

Group of orthologs #144. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 C.trachomatis:63

Q5K7B5              	100.00%		O84297              	100.00%
Bootstrap support for Q5K7B5 as seed ortholog is 100%.
Bootstrap support for O84297 as seed ortholog is 100%.

Group of orthologs #145. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:17 C.trachomatis:62

Q5KKW4              	100.00%		P0CD88              	100.00%
Bootstrap support for Q5KKW4 as seed ortholog is 72%.
Alternative seed ortholog is Q5KA19 (17 bits away from this cluster)
Bootstrap support for P0CD88 as seed ortholog is 100%.

Group of orthologs #146. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 C.trachomatis:61

Q5KPZ1              	100.00%		O84527              	100.00%
Bootstrap support for Q5KPZ1 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #147. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 C.trachomatis:60

Q5KCT3              	100.00%		O84353              	100.00%
Bootstrap support for Q5KCT3 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #148. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 C.trachomatis:60

Q5KKU8              	100.00%		O84221              	100.00%
Bootstrap support for Q5KKU8 as seed ortholog is 100%.
Bootstrap support for O84221 as seed ortholog is 100%.

Group of orthologs #149. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 C.trachomatis:17

Q5KG59              	100.00%		O84132              	100.00%
                    	       		O84695              	12.88%
                    	       		O84205              	10.10%
                    	       		O84071              	6.82%
                    	       		O84183              	6.31%
                    	       		O84696              	6.06%
Bootstrap support for Q5KG59 as seed ortholog is 100%.
Bootstrap support for O84132 as seed ortholog is 72%.
Alternative seed ortholog is O84691 (17 bits away from this cluster)

Group of orthologs #150. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 C.trachomatis:59

Q5KDR0              	100.00%		O84381              	100.00%
Q5KDL9              	43.70%		
Bootstrap support for Q5KDR0 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #151. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 C.trachomatis:59

P0CN38              	100.00%		O84686              	100.00%
Bootstrap support for P0CN38 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #152. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 C.trachomatis:59

Q5K7B2              	100.00%		O84284              	100.00%
Bootstrap support for Q5K7B2 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #153. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 C.trachomatis:59

Q5KEV1              	100.00%		P0A4C8              	100.00%
Bootstrap support for Q5KEV1 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #154. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 C.trachomatis:59

Q5KLP6              	100.00%		O84684              	100.00%
Bootstrap support for Q5KLP6 as seed ortholog is 100%.
Bootstrap support for O84684 as seed ortholog is 100%.

Group of orthologs #155. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 C.trachomatis:58

Q5KH62              	100.00%		O84822              	100.00%
Bootstrap support for Q5KH62 as seed ortholog is 100%.
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #156. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 C.trachomatis:56

Q5KPF3              	100.00%		O84611              	100.00%
Bootstrap support for Q5KPF3 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #157. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 C.trachomatis:55

Q5KKF0              	100.00%		O84781              	100.00%
Q5K705              	6.42%		
Bootstrap support for Q5KKF0 as seed ortholog is 100%.
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #158. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 C.trachomatis:55

Q5KKY5              	100.00%		P0CE02              	100.00%
Bootstrap support for Q5KKY5 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #159. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 C.trachomatis:54

Q5KI30              	100.00%		O84239              	100.00%
Q5KI56              	17.65%		
Bootstrap support for Q5KI30 as seed ortholog is 100%.
Bootstrap support for O84239 as seed ortholog is 100%.

Group of orthologs #160. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 C.trachomatis:52

Q5KHF3              	100.00%		O84218              	100.00%
Q5K7Z0              	82.55%		
Q5KIM5              	42.68%		
Q5KNP4              	36.62%		
Q5KJ62              	25.32%		
Bootstrap support for Q5KHF3 as seed ortholog is 100%.
Bootstrap support for O84218 as seed ortholog is 100%.

Group of orthologs #161. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 C.trachomatis:52

Q5K9N4              	100.00%		O84029              	100.00%
Bootstrap support for Q5K9N4 as seed ortholog is 100%.
Bootstrap support for O84029 as seed ortholog is 100%.

Group of orthologs #162. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 C.trachomatis:52

Q5KM68              	100.00%		O84128              	100.00%
Bootstrap support for Q5KM68 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #163. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 C.trachomatis:51

Q07801              	100.00%		O84618              	100.00%
Bootstrap support for Q07801 as seed ortholog is 100%.
Bootstrap support for O84618 as seed ortholog is 100%.

Group of orthologs #164. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 C.trachomatis:51

Q5KM56              	100.00%		O84792              	100.00%
Bootstrap support for Q5KM56 as seed ortholog is 100%.
Bootstrap support for O84792 as seed ortholog is 100%.

Group of orthologs #165. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 C.trachomatis:50

P0CL94              	100.00%		O84138              	100.00%
Bootstrap support for P0CL94 as seed ortholog is 100%.
Bootstrap support for O84138 as seed ortholog is 100%.

Group of orthologs #166. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 C.trachomatis:50

Q5KEZ0              	100.00%		O84081              	100.00%
Bootstrap support for Q5KEZ0 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #167. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 C.trachomatis:50

Q5KLA4              	100.00%		O84390              	100.00%
Bootstrap support for Q5KLA4 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #168. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 C.trachomatis:49

Q5KK13              	100.00%		O84191              	100.00%
Bootstrap support for Q5KK13 as seed ortholog is 100%.
Bootstrap support for O84191 as seed ortholog is 100%.

Group of orthologs #169. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 C.trachomatis:48

Q5KBH4              	100.00%		O84032              	100.00%
Bootstrap support for Q5KBH4 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.

Group of orthologs #170. Best score 46 bits
Score difference with first non-orthologous sequence - C.neoformans:46 C.trachomatis:46

Q5KNH2              	100.00%		P0CE05              	100.00%
Bootstrap support for Q5KNH2 as seed ortholog is 100%.
Bootstrap support for P0CE05 as seed ortholog is 100%.

Group of orthologs #171. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:45 C.trachomatis:45

Q5KK76              	100.00%		O84366              	100.00%
Q5KDS4              	18.96%		
Q5KBM7              	12.84%		
Bootstrap support for Q5KK76 as seed ortholog is 100%.
Bootstrap support for O84366 as seed ortholog is 100%.

Group of orthologs #172. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 C.trachomatis:44

P0CO20              	100.00%		O84496              	100.00%
Q5KDW3              	24.75%		
Bootstrap support for P0CO20 as seed ortholog is 100%.
Bootstrap support for O84496 as seed ortholog is 100%.

Group of orthologs #173. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 C.trachomatis:44

Q5KHF9              	100.00%		O84777              	100.00%
Bootstrap support for Q5KHF9 as seed ortholog is 100%.
Bootstrap support for O84777 as seed ortholog is 100%.

Group of orthologs #174. Best score 40 bits
Score difference with first non-orthologous sequence - C.neoformans:40 C.trachomatis:40

P0CS70              	100.00%		O84219              	100.00%
Bootstrap support for P0CS70 as seed ortholog is 100%.
Bootstrap support for O84219 as seed ortholog is 100%.