###################################
175 groups of orthologs
265 in-paralogs from C.militaris
182 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 841 bits
Score difference with first non-orthologous sequence - C.militaris:595 C.trachomatis:841

G3JPW1              	100.00%		O84022              	100.00%
Bootstrap support for G3JPW1 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 745 bits
Score difference with first non-orthologous sequence - C.militaris:745 C.trachomatis:745

G3JE01              	100.00%		O84250              	100.00%
Bootstrap support for G3JE01 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 680 bits
Score difference with first non-orthologous sequence - C.militaris:121 C.trachomatis:625

G3JJ21              	100.00%		P17821              	100.00%
Bootstrap support for G3JJ21 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #4. Best score 676 bits
Score difference with first non-orthologous sequence - C.militaris:16 C.trachomatis:165

G3JQ05              	100.00%		O84115              	100.00%
Bootstrap support for G3JQ05 as seed ortholog is 61%.
Alternative seed ortholog is G3JHM8 (16 bits away from this cluster)
Bootstrap support for O84115 as seed ortholog is 99%.

Group of orthologs #5. Best score 673 bits
Score difference with first non-orthologous sequence - C.militaris:255 C.trachomatis:673

G3JAA7              	100.00%		O84348              	100.00%
Bootstrap support for G3JAA7 as seed ortholog is 99%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #6. Best score 536 bits
Score difference with first non-orthologous sequence - C.militaris:448 C.trachomatis:356

G3JFV6              	100.00%		P0C0Z7              	100.00%
Bootstrap support for G3JFV6 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #7. Best score 511 bits
Score difference with first non-orthologous sequence - C.militaris:511 C.trachomatis:511

G3JPS7              	100.00%		O84057              	100.00%
Bootstrap support for G3JPS7 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #8. Best score 497 bits
Score difference with first non-orthologous sequence - C.militaris:381 C.trachomatis:497

G3JKE8              	100.00%		O84304              	100.00%
Bootstrap support for G3JKE8 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #9. Best score 492 bits
Score difference with first non-orthologous sequence - C.militaris:197 C.trachomatis:492

G3JIB2              	100.00%		O84444              	100.00%
Bootstrap support for G3JIB2 as seed ortholog is 99%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #10. Best score 480 bits
Score difference with first non-orthologous sequence - C.militaris:480 C.trachomatis:480

G3J7Z2              	100.00%		O84834              	100.00%
Bootstrap support for G3J7Z2 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #11. Best score 479 bits
Score difference with first non-orthologous sequence - C.militaris:479 C.trachomatis:479

G3JJY0              	100.00%		O84754              	100.00%
Bootstrap support for G3JJY0 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #12. Best score 478 bits
Score difference with first non-orthologous sequence - C.militaris:387 C.trachomatis:478

G3JKM5              	100.00%		O84211              	100.00%
Bootstrap support for G3JKM5 as seed ortholog is 100%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #13. Best score 465 bits
Score difference with first non-orthologous sequence - C.militaris:465 C.trachomatis:465

G3J3L5              	100.00%		O84755              	100.00%
Bootstrap support for G3J3L5 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 100%.

Group of orthologs #14. Best score 463 bits
Score difference with first non-orthologous sequence - C.militaris:463 C.trachomatis:463

G3JL79              	100.00%		O84066              	100.00%
Bootstrap support for G3JL79 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #15. Best score 462 bits
Score difference with first non-orthologous sequence - C.militaris:462 C.trachomatis:462

G3JHB6              	100.00%		P0CD73              	100.00%
Bootstrap support for G3JHB6 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #16. Best score 456 bits
Score difference with first non-orthologous sequence - C.militaris:309 C.trachomatis:456

G3J4Q2              	100.00%		P0CD71              	100.00%
Bootstrap support for G3J4Q2 as seed ortholog is 100%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #17. Best score 455 bits
Score difference with first non-orthologous sequence - C.militaris:158 C.trachomatis:455

G3JLF5              	100.00%		O84585              	100.00%
Bootstrap support for G3JLF5 as seed ortholog is 99%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #18. Best score 453 bits
Score difference with first non-orthologous sequence - C.militaris:453 C.trachomatis:453

G3JAR3              	100.00%		O84863              	100.00%
Bootstrap support for G3JAR3 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #19. Best score 433 bits
Score difference with first non-orthologous sequence - C.militaris:39 C.trachomatis:433

G3J955              	100.00%		O84848              	100.00%
Bootstrap support for G3J955 as seed ortholog is 76%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #20. Best score 420 bits
Score difference with first non-orthologous sequence - C.militaris:292 C.trachomatis:420

G3JN91              	100.00%		O84067              	100.00%
Bootstrap support for G3JN91 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #21. Best score 378 bits
Score difference with first non-orthologous sequence - C.militaris:378 C.trachomatis:378

G3JPY3              	100.00%		O84172              	100.00%
Bootstrap support for G3JPY3 as seed ortholog is 100%.
Bootstrap support for O84172 as seed ortholog is 100%.

Group of orthologs #22. Best score 370 bits
Score difference with first non-orthologous sequence - C.militaris:370 C.trachomatis:370

G3JFU3              	100.00%		P0CE13              	100.00%
Bootstrap support for G3JFU3 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #23. Best score 367 bits
Score difference with first non-orthologous sequence - C.militaris:213 C.trachomatis:367

G3J440              	100.00%		O84098              	100.00%
Bootstrap support for G3J440 as seed ortholog is 99%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #24. Best score 366 bits
Score difference with first non-orthologous sequence - C.militaris:366 C.trachomatis:366

G3J9H9              	100.00%		O84310              	100.00%
Bootstrap support for G3J9H9 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #25. Best score 364 bits
Score difference with first non-orthologous sequence - C.militaris:364 C.trachomatis:364

G3JN58              	100.00%		O84591              	100.00%
Bootstrap support for G3JN58 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #26. Best score 352 bits
Score difference with first non-orthologous sequence - C.militaris:352 C.trachomatis:352

G3JAP4              	100.00%		O84126              	100.00%
Bootstrap support for G3JAP4 as seed ortholog is 100%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #27. Best score 350 bits
Score difference with first non-orthologous sequence - C.militaris:350 C.trachomatis:350

G3JFT1              	100.00%		Q59321              	100.00%
Bootstrap support for G3JFT1 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #28. Best score 348 bits
Score difference with first non-orthologous sequence - C.militaris:348 C.trachomatis:348

G3JJM2              	100.00%		O84101              	100.00%
Bootstrap support for G3JJM2 as seed ortholog is 100%.
Bootstrap support for O84101 as seed ortholog is 100%.

Group of orthologs #29. Best score 340 bits
Score difference with first non-orthologous sequence - C.militaris:237 C.trachomatis:340

G3JP42              	100.00%		O84831              	100.00%
Bootstrap support for G3JP42 as seed ortholog is 99%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #30. Best score 318 bits
Score difference with first non-orthologous sequence - C.militaris:318 C.trachomatis:318

G3JLN9              	100.00%		O84823              	100.00%
Bootstrap support for G3JLN9 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #31. Best score 315 bits
Score difference with first non-orthologous sequence - C.militaris:315 C.trachomatis:315

G3JT79              	100.00%		P0CD78              	100.00%
Bootstrap support for G3JT79 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #32. Best score 303 bits
Score difference with first non-orthologous sequence - C.militaris:303 C.trachomatis:303

G3JRK9              	100.00%		O84248              	100.00%
Bootstrap support for G3JRK9 as seed ortholog is 100%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #33. Best score 299 bits
Score difference with first non-orthologous sequence - C.militaris:104 C.trachomatis:299

G3J3U0              	100.00%		O84561              	100.00%
Bootstrap support for G3J3U0 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #34. Best score 293 bits
Score difference with first non-orthologous sequence - C.militaris:293 C.trachomatis:293

G3JJZ0              	100.00%		O84316              	100.00%
G3J9A7              	13.11%		
G3JDM8              	9.62%		
Bootstrap support for G3JJZ0 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #35. Best score 289 bits
Score difference with first non-orthologous sequence - C.militaris:77 C.trachomatis:289

G3JIN8              	100.00%		O84797              	100.00%
Bootstrap support for G3JIN8 as seed ortholog is 92%.
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #36. Best score 288 bits
Score difference with first non-orthologous sequence - C.militaris:110 C.trachomatis:288

G3J6C9              	100.00%		O84786              	100.00%
Bootstrap support for G3J6C9 as seed ortholog is 97%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #37. Best score 288 bits
Score difference with first non-orthologous sequence - C.militaris:288 C.trachomatis:288

G3JGB3              	100.00%		O84614              	100.00%
Bootstrap support for G3JGB3 as seed ortholog is 100%.
Bootstrap support for O84614 as seed ortholog is 100%.

Group of orthologs #38. Best score 285 bits
Score difference with first non-orthologous sequence - C.militaris:285 C.trachomatis:285

G3JIK5              	100.00%		P0CE21              	100.00%
Bootstrap support for G3JIK5 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #39. Best score 279 bits
Score difference with first non-orthologous sequence - C.militaris:279 C.trachomatis:279

G3JLI9              	100.00%		O84188              	100.00%
Bootstrap support for G3JLI9 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #40. Best score 275 bits
Score difference with first non-orthologous sequence - C.militaris:34 C.trachomatis:275

G3JLZ6              	100.00%		O84829              	100.00%
Bootstrap support for G3JLZ6 as seed ortholog is 82%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #41. Best score 270 bits
Score difference with first non-orthologous sequence - C.militaris:147 C.trachomatis:270

G3J6C1              	100.00%		O84035              	100.00%
Bootstrap support for G3J6C1 as seed ortholog is 99%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #42. Best score 269 bits
Score difference with first non-orthologous sequence - C.militaris:213 C.trachomatis:269

G3JA32              	100.00%		O84315              	100.00%
Bootstrap support for G3JA32 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #43. Best score 263 bits
Score difference with first non-orthologous sequence - C.militaris:175 C.trachomatis:263

G3J7I6              	100.00%		O84775              	100.00%
Bootstrap support for G3J7I6 as seed ortholog is 100%.
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #44. Best score 261 bits
Score difference with first non-orthologous sequence - C.militaris:167 C.trachomatis:97

G3J3S3              	100.00%		O84058              	100.00%
Bootstrap support for G3J3S3 as seed ortholog is 99%.
Bootstrap support for O84058 as seed ortholog is 99%.

Group of orthologs #45. Best score 260 bits
Score difference with first non-orthologous sequence - C.militaris:95 C.trachomatis:260

G3JSY5              	100.00%		O84828              	100.00%
Bootstrap support for G3JSY5 as seed ortholog is 99%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #46. Best score 257 bits
Score difference with first non-orthologous sequence - C.militaris:257 C.trachomatis:257

G3JEV3              	100.00%		P0CE09              	100.00%
G3JN95              	17.02%		
G3JS57              	5.40%		
Bootstrap support for G3JEV3 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #47. Best score 255 bits
Score difference with first non-orthologous sequence - C.militaris:255 C.trachomatis:255

G3JU02              	100.00%		P0CD72              	100.00%
Bootstrap support for G3JU02 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #48. Best score 253 bits
Score difference with first non-orthologous sequence - C.militaris:76 C.trachomatis:253

G3JDK6              	100.00%		O84352              	100.00%
G3JLY8              	9.28%		
Bootstrap support for G3JDK6 as seed ortholog is 96%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #49. Best score 252 bits
Score difference with first non-orthologous sequence - C.militaris:252 C.trachomatis:252

G3J4E2              	100.00%		O84439              	100.00%
G3J605              	37.70%		
Bootstrap support for G3J4E2 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #50. Best score 248 bits
Score difference with first non-orthologous sequence - C.militaris:106 C.trachomatis:84

G3JGW6              	100.00%		O84249              	100.00%
Bootstrap support for G3JGW6 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 97%.

Group of orthologs #51. Best score 246 bits
Score difference with first non-orthologous sequence - C.militaris:246 C.trachomatis:246

G3JU99              	100.00%		O84451              	100.00%
Bootstrap support for G3JU99 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #52. Best score 245 bits
Score difference with first non-orthologous sequence - C.militaris:245 C.trachomatis:245

G3J7R4              	100.00%		O84373              	100.00%
Bootstrap support for G3J7R4 as seed ortholog is 100%.
Bootstrap support for O84373 as seed ortholog is 100%.

Group of orthologs #53. Best score 240 bits
Score difference with first non-orthologous sequence - C.militaris:240 C.trachomatis:240

G3JPY6              	100.00%		O84642              	100.00%
G3JJD6              	27.02%		
Bootstrap support for G3JPY6 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #54. Best score 240 bits
Score difference with first non-orthologous sequence - C.militaris:84 C.trachomatis:240

G3JII2              	100.00%		O84006              	100.00%
Bootstrap support for G3JII2 as seed ortholog is 96%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #55. Best score 238 bits
Score difference with first non-orthologous sequence - C.militaris:145 C.trachomatis:238

G3JN44              	100.00%		P36431              	100.00%
Bootstrap support for G3JN44 as seed ortholog is 99%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #56. Best score 237 bits
Score difference with first non-orthologous sequence - C.militaris:137 C.trachomatis:237

G3J357              	100.00%		O84546              	100.00%
Bootstrap support for G3J357 as seed ortholog is 99%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #57. Best score 235 bits
Score difference with first non-orthologous sequence - C.militaris:170 C.trachomatis:235

G3JI77              	100.00%		O84309              	100.00%
Bootstrap support for G3JI77 as seed ortholog is 99%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #58. Best score 233 bits
Score difference with first non-orthologous sequence - C.militaris:233 C.trachomatis:233

G3JSN0              	100.00%		O84698              	100.00%
G3JRT7              	35.68%		
G3J5P5              	13.23%		
Bootstrap support for G3JSN0 as seed ortholog is 100%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #59. Best score 229 bits
Score difference with first non-orthologous sequence - C.militaris:153 C.trachomatis:229

G3J9B6              	100.00%		O84596              	100.00%
Bootstrap support for G3J9B6 as seed ortholog is 99%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #60. Best score 228 bits
Score difference with first non-orthologous sequence - C.militaris:25 C.trachomatis:228

G3J8I4              	100.00%		O84345              	100.00%
Bootstrap support for G3J8I4 as seed ortholog is 59%.
Alternative seed ortholog is G3JKF6 (25 bits away from this cluster)
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #61. Best score 226 bits
Score difference with first non-orthologous sequence - C.militaris:226 C.trachomatis:226

G3JSJ1              	100.00%		O84787              	100.00%
Bootstrap support for G3JSJ1 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #62. Best score 222 bits
Score difference with first non-orthologous sequence - C.militaris:222 C.trachomatis:222

G3JF75              	100.00%		O84562              	100.00%
Bootstrap support for G3JF75 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #63. Best score 215 bits
Score difference with first non-orthologous sequence - C.militaris:136 C.trachomatis:215

G3J5S1              	100.00%		O84094              	100.00%
Bootstrap support for G3J5S1 as seed ortholog is 99%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #64. Best score 214 bits
Score difference with first non-orthologous sequence - C.militaris:214 C.trachomatis:214

G3JB30              	100.00%		O84812              	100.00%
Bootstrap support for G3JB30 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #65. Best score 213 bits
Score difference with first non-orthologous sequence - C.militaris:213 C.trachomatis:213

G3J7A9              	100.00%		O84638              	100.00%
Bootstrap support for G3J7A9 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #66. Best score 206 bits
Score difference with first non-orthologous sequence - C.militaris:15 C.trachomatis:206

G3JRS4              	100.00%		O84296              	100.00%
Bootstrap support for G3JRS4 as seed ortholog is 69%.
Alternative seed ortholog is G3JFY6 (15 bits away from this cluster)
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #67. Best score 203 bits
Score difference with first non-orthologous sequence - C.militaris:203 C.trachomatis:203

G3JQQ9              	100.00%		O84196              	100.00%
Bootstrap support for G3JQQ9 as seed ortholog is 100%.
Bootstrap support for O84196 as seed ortholog is 100%.

Group of orthologs #68. Best score 201 bits
Score difference with first non-orthologous sequence - C.militaris:201 C.trachomatis:201

G3J8A8              	100.00%		O84423              	100.00%
Bootstrap support for G3J8A8 as seed ortholog is 100%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #69. Best score 198 bits
Score difference with first non-orthologous sequence - C.militaris:198 C.trachomatis:79

G3JUF7              	100.00%		O84026              	100.00%
Bootstrap support for G3JUF7 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 97%.

Group of orthologs #70. Best score 191 bits
Score difference with first non-orthologous sequence - C.militaris:191 C.trachomatis:191

G3J773              	100.00%		O84065              	100.00%
Bootstrap support for G3J773 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #71. Best score 190 bits
Score difference with first non-orthologous sequence - C.militaris:190 C.trachomatis:190

G3J7T3              	100.00%		O84007              	100.00%
Bootstrap support for G3J7T3 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #72. Best score 189 bits
Score difference with first non-orthologous sequence - C.militaris:189 C.trachomatis:189

G3JFI0              	100.00%		O84859              	100.00%
G3JIA7              	50.72%		
Bootstrap support for G3JFI0 as seed ortholog is 100%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #73. Best score 189 bits
Score difference with first non-orthologous sequence - C.militaris:56 C.trachomatis:189

G3JS09              	100.00%		O84732              	100.00%
G3JGD8              	24.11%		
Bootstrap support for G3JS09 as seed ortholog is 95%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #74. Best score 188 bits
Score difference with first non-orthologous sequence - C.militaris:188 C.trachomatis:67

G3JIR9              	100.00%		O84028              	100.00%
Bootstrap support for G3JIR9 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 96%.

Group of orthologs #75. Best score 182 bits
Score difference with first non-orthologous sequence - C.militaris:182 C.trachomatis:182

G3JQS0              	100.00%		O84266              	100.00%
G3JDC6              	43.39%		
Bootstrap support for G3JQS0 as seed ortholog is 100%.
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #76. Best score 181 bits
Score difference with first non-orthologous sequence - C.militaris:103 C.trachomatis:181

G3J3F9              	100.00%		O84530              	100.00%
Bootstrap support for G3J3F9 as seed ortholog is 99%.
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #77. Best score 181 bits
Score difference with first non-orthologous sequence - C.militaris:181 C.trachomatis:181

G3J751              	100.00%		O84460              	100.00%
Bootstrap support for G3J751 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #78. Best score 176 bits
Score difference with first non-orthologous sequence - C.militaris:176 C.trachomatis:176

G3JJY4              	100.00%		O84613              	100.00%
Bootstrap support for G3JJY4 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #79. Best score 174 bits
Score difference with first non-orthologous sequence - C.militaris:174 C.trachomatis:174

G3JUJ2              	100.00%		O84109              	100.00%
Bootstrap support for G3JUJ2 as seed ortholog is 100%.
Bootstrap support for O84109 as seed ortholog is 100%.

Group of orthologs #80. Best score 172 bits
Score difference with first non-orthologous sequence - C.militaris:59 C.trachomatis:172

G3J2T9              	100.00%		O84247              	100.00%
Bootstrap support for G3J2T9 as seed ortholog is 95%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #81. Best score 171 bits
Score difference with first non-orthologous sequence - C.militaris:37 C.trachomatis:171

G3JPS3              	100.00%		O84676              	100.00%
                    	       		O84722              	11.44%
Bootstrap support for G3JPS3 as seed ortholog is 82%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #82. Best score 171 bits
Score difference with first non-orthologous sequence - C.militaris:171 C.trachomatis:171

G3JPS1              	100.00%		O84711              	100.00%
Bootstrap support for G3JPS1 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #83. Best score 166 bits
Score difference with first non-orthologous sequence - C.militaris:166 C.trachomatis:166

G3JIE8              	100.00%		O84360              	100.00%
Bootstrap support for G3JIE8 as seed ortholog is 100%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #84. Best score 163 bits
Score difference with first non-orthologous sequence - C.militaris:163 C.trachomatis:42

G3JG67              	100.00%		O84712              	100.00%
Bootstrap support for G3JG67 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 94%.

Group of orthologs #85. Best score 162 bits
Score difference with first non-orthologous sequence - C.militaris:162 C.trachomatis:162

G3JN60              	100.00%		O84630              	100.00%
Bootstrap support for G3JN60 as seed ortholog is 100%.
Bootstrap support for O84630 as seed ortholog is 100%.

Group of orthologs #86. Best score 160 bits
Score difference with first non-orthologous sequence - C.militaris:42 C.trachomatis:160

G3J6I7              	100.00%		O84332              	100.00%
Bootstrap support for G3J6I7 as seed ortholog is 89%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #87. Best score 156 bits
Score difference with first non-orthologous sequence - C.militaris:156 C.trachomatis:156

G3JDI4              	100.00%		O84619              	100.00%
Bootstrap support for G3JDI4 as seed ortholog is 100%.
Bootstrap support for O84619 as seed ortholog is 100%.

Group of orthologs #88. Best score 155 bits
Score difference with first non-orthologous sequence - C.militaris:19 C.trachomatis:155

G3J7F1              	100.00%		O84734              	100.00%
Bootstrap support for G3J7F1 as seed ortholog is 62%.
Alternative seed ortholog is G3JD95 (19 bits away from this cluster)
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #89. Best score 155 bits
Score difference with first non-orthologous sequence - C.militaris:108 C.trachomatis:155

G3JA18              	100.00%		O84368              	100.00%
Bootstrap support for G3JA18 as seed ortholog is 99%.
Bootstrap support for O84368 as seed ortholog is 100%.

Group of orthologs #90. Best score 143 bits
Score difference with first non-orthologous sequence - C.militaris:5 C.trachomatis:143

G3J2N1              	100.00%		P38004              	100.00%
Bootstrap support for G3J2N1 as seed ortholog is 38%.
Alternative seed ortholog is G3JHV2 (5 bits away from this cluster)
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #91. Best score 139 bits
Score difference with first non-orthologous sequence - C.militaris:139 C.trachomatis:139

G3JHA7              	100.00%		O84589              	100.00%
Bootstrap support for G3JHA7 as seed ortholog is 100%.
Bootstrap support for O84589 as seed ortholog is 100%.

Group of orthologs #92. Best score 138 bits
Score difference with first non-orthologous sequence - C.militaris:138 C.trachomatis:27

G3JNN2              	100.00%		O84260              	100.00%
Bootstrap support for G3JNN2 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 74%.
Alternative seed ortholog is O84693 (27 bits away from this cluster)

Group of orthologs #93. Best score 137 bits
Score difference with first non-orthologous sequence - C.militaris:137 C.trachomatis:137

G3JNV1              	100.00%		O84704              	100.00%
Bootstrap support for G3JNV1 as seed ortholog is 100%.
Bootstrap support for O84704 as seed ortholog is 100%.

Group of orthologs #94. Best score 136 bits
Score difference with first non-orthologous sequence - C.militaris:86 C.trachomatis:136

G3J6B7              	100.00%		P66370              	100.00%
Bootstrap support for G3J6B7 as seed ortholog is 99%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #95. Best score 136 bits
Score difference with first non-orthologous sequence - C.militaris:136 C.trachomatis:136

G3JH47              	100.00%		O84835              	100.00%
Bootstrap support for G3JH47 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #96. Best score 136 bits
Score difference with first non-orthologous sequence - C.militaris:136 C.trachomatis:136

G3JUC8              	100.00%		O84123              	100.00%
Bootstrap support for G3JUC8 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #97. Best score 126 bits
Score difference with first non-orthologous sequence - C.militaris:126 C.trachomatis:126

G3J8V3              	100.00%		O84033              	100.00%
G3J2Z4              	31.47%		
Bootstrap support for G3J8V3 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #98. Best score 122 bits
Score difference with first non-orthologous sequence - C.militaris:45 C.trachomatis:122

G3JPX6              	100.00%		O84130              	100.00%
G3JFZ0              	5.32%		
Bootstrap support for G3JPX6 as seed ortholog is 92%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #99. Best score 121 bits
Score difference with first non-orthologous sequence - C.militaris:30 C.trachomatis:121

G3JEU0              	100.00%		O84843              	100.00%
Bootstrap support for G3JEU0 as seed ortholog is 72%.
Alternative seed ortholog is G3JJ96 (30 bits away from this cluster)
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #100. Best score 118 bits
Score difference with first non-orthologous sequence - C.militaris:33 C.trachomatis:118

G3J668              	100.00%		O84864              	100.00%
Bootstrap support for G3J668 as seed ortholog is 74%.
Alternative seed ortholog is G3J7L8 (33 bits away from this cluster)
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #101. Best score 118 bits
Score difference with first non-orthologous sequence - C.militaris:118 C.trachomatis:118

G3JN72              	100.00%		O84752              	100.00%
Bootstrap support for G3JN72 as seed ortholog is 100%.
Bootstrap support for O84752 as seed ortholog is 100%.

Group of orthologs #102. Best score 118 bits
Score difference with first non-orthologous sequence - C.militaris:118 C.trachomatis:118

G3JQN0              	100.00%		O84096              	100.00%
Bootstrap support for G3JQN0 as seed ortholog is 100%.
Bootstrap support for O84096 as seed ortholog is 100%.

Group of orthologs #103. Best score 117 bits
Score difference with first non-orthologous sequence - C.militaris:117 C.trachomatis:117

G3J7X2              	100.00%		O84649              	100.00%
Bootstrap support for G3J7X2 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #104. Best score 116 bits
Score difference with first non-orthologous sequence - C.militaris:116 C.trachomatis:116

G3J894              	100.00%		O84492              	100.00%
Bootstrap support for G3J894 as seed ortholog is 100%.
Bootstrap support for O84492 as seed ortholog is 100%.

Group of orthologs #105. Best score 114 bits
Score difference with first non-orthologous sequence - C.militaris:35 C.trachomatis:114

G3JRW8              	100.00%		O84782              	100.00%
Bootstrap support for G3JRW8 as seed ortholog is 79%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #106. Best score 108 bits
Score difference with first non-orthologous sequence - C.militaris:108 C.trachomatis:108

G3JDL8              	100.00%		O84578              	100.00%
Bootstrap support for G3JDL8 as seed ortholog is 100%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #107. Best score 107 bits
Score difference with first non-orthologous sequence - C.militaris:107 C.trachomatis:107

G3JKX3              	100.00%		O84442              	100.00%
G3J869              	6.17%		
Bootstrap support for G3JKX3 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #108. Best score 107 bits
Score difference with first non-orthologous sequence - C.militaris:107 C.trachomatis:107

G3J9A0              	100.00%		O84200              	100.00%
Bootstrap support for G3J9A0 as seed ortholog is 100%.
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #109. Best score 107 bits
Score difference with first non-orthologous sequence - C.militaris:107 C.trachomatis:107

G3J9Y5              	100.00%		P55137              	100.00%
Bootstrap support for G3J9Y5 as seed ortholog is 100%.
Bootstrap support for P55137 as seed ortholog is 100%.

Group of orthologs #110. Best score 105 bits
Score difference with first non-orthologous sequence - C.militaris:105 C.trachomatis:105

G3JKQ1              	100.00%		P0CD79              	100.00%
Bootstrap support for G3JKQ1 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #111. Best score 103 bits
Score difference with first non-orthologous sequence - C.militaris:103 C.trachomatis:103

G3J5B5              	100.00%		O84456              	100.00%
G3JEK6              	16.14%		
Bootstrap support for G3J5B5 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #112. Best score 99 bits
Score difference with first non-orthologous sequence - C.militaris:99 C.trachomatis:99

G3JGS9              	100.00%		O84478              	100.00%
Bootstrap support for G3JGS9 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #113. Best score 97 bits
Score difference with first non-orthologous sequence - C.militaris:97 C.trachomatis:97

G3JL92              	100.00%		O84410              	100.00%
Bootstrap support for G3JL92 as seed ortholog is 100%.
Bootstrap support for O84410 as seed ortholog is 100%.

Group of orthologs #114. Best score 95 bits
Score difference with first non-orthologous sequence - C.militaris:95 C.trachomatis:95

G3JSK5              	100.00%		O84533              	100.00%
Bootstrap support for G3JSK5 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #115. Best score 94 bits
Score difference with first non-orthologous sequence - C.militaris:94 C.trachomatis:94

G3J3N3              	100.00%		O84435              	100.00%
Bootstrap support for G3J3N3 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #116. Best score 94 bits
Score difference with first non-orthologous sequence - C.militaris:94 C.trachomatis:94

G3JTM4              	100.00%		O84241              	100.00%
Bootstrap support for G3JTM4 as seed ortholog is 100%.
Bootstrap support for O84241 as seed ortholog is 100%.

Group of orthologs #117. Best score 92 bits
Score difference with first non-orthologous sequence - C.militaris:92 C.trachomatis:92

G3JMI1              	100.00%		O84212              	100.00%
G3JSS1              	12.48%		
Bootstrap support for G3JMI1 as seed ortholog is 100%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #118. Best score 89 bits
Score difference with first non-orthologous sequence - C.militaris:89 C.trachomatis:89

G3JHY6              	100.00%		O84294              	100.00%
Bootstrap support for G3JHY6 as seed ortholog is 100%.
Bootstrap support for O84294 as seed ortholog is 100%.

Group of orthologs #119. Best score 87 bits
Score difference with first non-orthologous sequence - C.militaris:87 C.trachomatis:87

G3J3E1              	100.00%		O84358              	100.00%
Bootstrap support for G3J3E1 as seed ortholog is 100%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #120. Best score 87 bits
Score difference with first non-orthologous sequence - C.militaris:87 C.trachomatis:87

G3JM02              	100.00%		O84595              	100.00%
Bootstrap support for G3JM02 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #121. Best score 87 bits
Score difference with first non-orthologous sequence - C.militaris:22 C.trachomatis:87

G3JLP5              	100.00%		O84822              	100.00%
Bootstrap support for G3JLP5 as seed ortholog is 71%.
Alternative seed ortholog is G3J8S2 (22 bits away from this cluster)
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #122. Best score 85 bits
Score difference with first non-orthologous sequence - C.militaris:85 C.trachomatis:85

G3JL20              	100.00%		O84737              	100.00%
Bootstrap support for G3JL20 as seed ortholog is 100%.
Bootstrap support for O84737 as seed ortholog is 100%.

Group of orthologs #123. Best score 84 bits
Score difference with first non-orthologous sequence - C.militaris:41 C.trachomatis:84

G3JIC5              	100.00%		O84781              	100.00%
G3JNE1              	18.77%		
G3JIN5              	17.24%		
G3J620              	12.84%		
G3JIX7              	10.34%		
G3J455              	7.38%		
G3JJM5              	5.84%		
Bootstrap support for G3JIC5 as seed ortholog is 75%.
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #124. Best score 83 bits
Score difference with first non-orthologous sequence - C.militaris:83 C.trachomatis:83

G3JU78              	100.00%		O84301              	100.00%
G3J7Z9              	19.93%		
Bootstrap support for G3JU78 as seed ortholog is 100%.
Bootstrap support for O84301 as seed ortholog is 100%.

Group of orthologs #125. Best score 83 bits
Score difference with first non-orthologous sequence - C.militaris:83 C.trachomatis:83

G3JAX0              	100.00%		O84463              	100.00%
Bootstrap support for G3JAX0 as seed ortholog is 100%.
Bootstrap support for O84463 as seed ortholog is 100%.

Group of orthologs #126. Best score 82 bits
Score difference with first non-orthologous sequence - C.militaris:82 C.trachomatis:82

G3JLY2              	100.00%		O84508              	100.00%
Bootstrap support for G3JLY2 as seed ortholog is 100%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #127. Best score 82 bits
Score difference with first non-orthologous sequence - C.militaris:82 C.trachomatis:82

G3JPB2              	100.00%		O84320              	100.00%
Bootstrap support for G3JPB2 as seed ortholog is 100%.
Bootstrap support for O84320 as seed ortholog is 100%.

Group of orthologs #128. Best score 82 bits
Score difference with first non-orthologous sequence - C.militaris:82 C.trachomatis:82

G3JSZ2              	100.00%		O84321              	100.00%
Bootstrap support for G3JSZ2 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #129. Best score 81 bits
Score difference with first non-orthologous sequence - C.militaris:81 C.trachomatis:81

G3JC76              	100.00%		O84234              	100.00%
Bootstrap support for G3JC76 as seed ortholog is 100%.
Bootstrap support for O84234 as seed ortholog is 100%.

Group of orthologs #130. Best score 79 bits
Score difference with first non-orthologous sequence - C.militaris:79 C.trachomatis:79

G3JDK8              	100.00%		O84779              	100.00%
G3J9R9              	26.18%		
G3J815              	15.38%		
Bootstrap support for G3JDK8 as seed ortholog is 100%.
Bootstrap support for O84779 as seed ortholog is 100%.

Group of orthologs #131. Best score 77 bits
Score difference with first non-orthologous sequence - C.militaris:77 C.trachomatis:77

G3J4L3              	100.00%		O84391              	100.00%
Bootstrap support for G3J4L3 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #132. Best score 76 bits
Score difference with first non-orthologous sequence - C.militaris:76 C.trachomatis:76

G3J5J9              	100.00%		O84318              	100.00%
Bootstrap support for G3J5J9 as seed ortholog is 100%.
Bootstrap support for O84318 as seed ortholog is 100%.

Group of orthologs #133. Best score 76 bits
Score difference with first non-orthologous sequence - C.militaris:13 C.trachomatis:76

G3JD64              	100.00%		P0CE04              	100.00%
Bootstrap support for G3JD64 as seed ortholog is 76%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #134. Best score 76 bits
Score difference with first non-orthologous sequence - C.militaris:76 C.trachomatis:76

G3JNL9              	100.00%		P0CD81              	100.00%
Bootstrap support for G3JNL9 as seed ortholog is 100%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #135. Best score 75 bits
Score difference with first non-orthologous sequence - C.militaris:75 C.trachomatis:75

G3JRF2              	100.00%		O84189              	100.00%
Bootstrap support for G3JRF2 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #136. Best score 73 bits
Score difference with first non-orthologous sequence - C.militaris:73 C.trachomatis:73

G3JBB0              	100.00%		O84719              	100.00%
Bootstrap support for G3JBB0 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #137. Best score 72 bits
Score difference with first non-orthologous sequence - C.militaris:72 C.trachomatis:72

G3JM30              	100.00%		P0C0Z8              	100.00%
Bootstrap support for G3JM30 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #138. Best score 71 bits
Score difference with first non-orthologous sequence - C.militaris:71 C.trachomatis:71

G3J780              	100.00%		O84353              	100.00%
Bootstrap support for G3J780 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #139. Best score 71 bits
Score difference with first non-orthologous sequence - C.militaris:71 C.trachomatis:71

G3JUA2              	100.00%		O84127              	100.00%
Bootstrap support for G3JUA2 as seed ortholog is 100%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #140. Best score 69 bits
Score difference with first non-orthologous sequence - C.militaris:69 C.trachomatis:69

G3J7A6              	100.00%		P0CD84              	100.00%
Bootstrap support for G3J7A6 as seed ortholog is 100%.
Bootstrap support for P0CD84 as seed ortholog is 100%.

Group of orthologs #141. Best score 68 bits
Score difference with first non-orthologous sequence - C.militaris:3 C.trachomatis:68

G3J6P7              	100.00%		O84544              	100.00%
G3J3E7              	5.40%		
Bootstrap support for G3J6P7 as seed ortholog is 44%.
Alternative seed ortholog is G3JNV0 (3 bits away from this cluster)
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #142. Best score 67 bits
Score difference with first non-orthologous sequence - C.militaris:15 C.trachomatis:67

G3JNZ9              	100.00%		O84366              	100.00%
G3J8V1              	27.34%		
G3JIT2              	26.91%		
G3JQK3              	19.71%		
Bootstrap support for G3JNZ9 as seed ortholog is 70%.
Alternative seed ortholog is G3JT57 (15 bits away from this cluster)
Bootstrap support for O84366 as seed ortholog is 100%.

Group of orthologs #143. Best score 67 bits
Score difference with first non-orthologous sequence - C.militaris:19 C.trachomatis:67

G3J823              	100.00%		P66480              	100.00%
Bootstrap support for G3J823 as seed ortholog is 82%.
Bootstrap support for P66480 as seed ortholog is 100%.

Group of orthologs #144. Best score 66 bits
Score difference with first non-orthologous sequence - C.militaris:66 C.trachomatis:66

G3JQL4              	100.00%		O84338              	100.00%
G3JLQ0              	19.32%		
G3J311              	14.99%		
Bootstrap support for G3JQL4 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #145. Best score 66 bits
Score difference with first non-orthologous sequence - C.militaris:66 C.trachomatis:66

G3J486              	100.00%		O84215              	100.00%
Bootstrap support for G3J486 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #146. Best score 64 bits
Score difference with first non-orthologous sequence - C.militaris:64 C.trachomatis:64

G3J6H4              	100.00%		P36424              	100.00%
Bootstrap support for G3J6H4 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #147. Best score 64 bits
Score difference with first non-orthologous sequence - C.militaris:64 C.trachomatis:64

G3JI58              	100.00%		O84792              	100.00%
Bootstrap support for G3JI58 as seed ortholog is 100%.
Bootstrap support for O84792 as seed ortholog is 100%.

Group of orthologs #148. Best score 63 bits
Score difference with first non-orthologous sequence - C.militaris:63 C.trachomatis:63

G3J4S0              	100.00%		O84132              	100.00%
                    	       		O84695              	11.99%
                    	       		O84205              	9.18%
                    	       		O84154              	7.40%
                    	       		O84071              	5.87%
                    	       		O84183              	5.36%
                    	       		O84696              	5.10%
Bootstrap support for G3J4S0 as seed ortholog is 100%.
Bootstrap support for O84132 as seed ortholog is 100%.

Group of orthologs #149. Best score 63 bits
Score difference with first non-orthologous sequence - C.militaris:11 C.trachomatis:63

G3J5Z8              	100.00%		P0CE03              	100.00%
Bootstrap support for G3J5Z8 as seed ortholog is 63%.
Alternative seed ortholog is G3J5R9 (11 bits away from this cluster)
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #150. Best score 62 bits
Score difference with first non-orthologous sequence - C.militaris:62 C.trachomatis:62

G3J418              	100.00%		O84833              	100.00%
Bootstrap support for G3J418 as seed ortholog is 100%.
Bootstrap support for O84833 as seed ortholog is 100%.

Group of orthologs #151. Best score 62 bits
Score difference with first non-orthologous sequence - C.militaris:62 C.trachomatis:62

G3J900              	100.00%		O84081              	100.00%
Bootstrap support for G3J900 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #152. Best score 62 bits
Score difference with first non-orthologous sequence - C.militaris:62 C.trachomatis:62

G3JUB1              	100.00%		O84128              	100.00%
Bootstrap support for G3JUB1 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #153. Best score 59 bits
Score difference with first non-orthologous sequence - C.militaris:59 C.trachomatis:59

G3J993              	100.00%		O84547              	100.00%
Bootstrap support for G3J993 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #154. Best score 58 bits
Score difference with first non-orthologous sequence - C.militaris:18 C.trachomatis:58

G3J3K3              	100.00%		O84390              	100.00%
Bootstrap support for G3J3K3 as seed ortholog is 57%.
Alternative seed ortholog is G3J6V1 (18 bits away from this cluster)
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #155. Best score 57 bits
Score difference with first non-orthologous sequence - C.militaris:57 C.trachomatis:57

G3JPX1              	100.00%		O84221              	100.00%
G3JTD6              	13.48%		
Bootstrap support for G3JPX1 as seed ortholog is 100%.
Bootstrap support for O84221 as seed ortholog is 100%.

Group of orthologs #156. Best score 57 bits
Score difference with first non-orthologous sequence - C.militaris:57 C.trachomatis:57

G3J954              	100.00%		O84027              	100.00%
Bootstrap support for G3J954 as seed ortholog is 100%.
Bootstrap support for O84027 as seed ortholog is 100%.

Group of orthologs #157. Best score 57 bits
Score difference with first non-orthologous sequence - C.militaris:7 C.trachomatis:57

G3JIB4              	100.00%		O84395              	100.00%
Bootstrap support for G3JIB4 as seed ortholog is 56%.
Alternative seed ortholog is G3J803 (7 bits away from this cluster)
Bootstrap support for O84395 as seed ortholog is 100%.

Group of orthologs #158. Best score 57 bits
Score difference with first non-orthologous sequence - C.militaris:57 C.trachomatis:57

G3JU77              	100.00%		O84284              	100.00%
Bootstrap support for G3JU77 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #159. Best score 56 bits
Score difference with first non-orthologous sequence - C.militaris:13 C.trachomatis:56

G3J479              	100.00%		O84548              	100.00%
G3JLS1              	44.31%		
G3JHL5              	34.39%		
G3J9C7              	33.37%		
G3J6U5              	31.68%		
G3JGL2              	29.88%		
G3J4H3              	28.97%		
G3JT56              	28.07%		
G3J7L5              	25.25%		
G3JFB5              	24.13%		
G3JJB1              	24.01%		
G3JSU8              	23.00%		
G3J498              	23.00%		
G3J6D3              	22.66%		
G3JT68              	21.65%		
G3J337              	20.41%		
G3J2X2              	19.39%		
G3JLA0              	19.17%		
G3JDV1              	18.04%		
G3JIT4              	17.70%		
G3JU00              	17.59%		
G3JUH5              	17.25%		
G3JFA8              	16.46%		
G3JIS1              	16.01%		
G3JIU5              	15.67%		
G3JTB4              	13.87%		
G3JFH9              	12.97%		
G3JB68              	12.85%		
G3JF43              	12.85%		
G3JUJ9              	12.29%		
G3J6K4              	11.95%		
G3JJD5              	11.84%		
G3JRZ0              	11.39%		
G3JJR3              	11.27%		
G3J4K3              	11.27%		
G3JKG2              	10.82%		
G3JNI7              	10.82%		
G3J4W4              	10.71%		
G3JP93              	10.71%		
G3J791              	9.47%		
G3JBJ2              	9.47%		
G3JKI1              	9.13%		
G3JT03              	8.57%		
G3J9N6              	8.34%		
G3JNM2              	8.12%		
G3JCT9              	7.44%		
G3J9F3              	7.10%		
G3JLB2              	7.10%		
G3JP72              	6.54%		
G3J3P5              	6.31%		
Bootstrap support for G3J479 as seed ortholog is 65%.
Alternative seed ortholog is G3JQS4 (13 bits away from this cluster)
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #160. Best score 56 bits
Score difference with first non-orthologous sequence - C.militaris:56 C.trachomatis:56

G3J7I8              	100.00%		O84618              	100.00%
Bootstrap support for G3J7I8 as seed ortholog is 100%.
Bootstrap support for O84618 as seed ortholog is 100%.

Group of orthologs #161. Best score 56 bits
Score difference with first non-orthologous sequence - C.militaris:56 C.trachomatis:56

G3JD96              	100.00%		O84611              	100.00%
Bootstrap support for G3JD96 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #162. Best score 54 bits
Score difference with first non-orthologous sequence - C.militaris:54 C.trachomatis:54

G3J7V8              	100.00%		P0CE02              	100.00%
Bootstrap support for G3J7V8 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #163. Best score 54 bits
Score difference with first non-orthologous sequence - C.militaris:54 C.trachomatis:54

G3JA62              	100.00%		O84469              	100.00%
Bootstrap support for G3JA62 as seed ortholog is 100%.
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #164. Best score 54 bits
Score difference with first non-orthologous sequence - C.militaris:54 C.trachomatis:54

G3JPP8              	100.00%		O84527              	100.00%
Bootstrap support for G3JPP8 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #165. Best score 52 bits
Score difference with first non-orthologous sequence - C.militaris:52 C.trachomatis:52

G3J914              	100.00%		O84650              	100.00%
Bootstrap support for G3J914 as seed ortholog is 100%.
Bootstrap support for O84650 as seed ortholog is 100%.

Group of orthologs #166. Best score 50 bits
Score difference with first non-orthologous sequence - C.militaris:50 C.trachomatis:50

G3JA78              	100.00%		O84150              	100.00%
G3JKR5              	13.32%		
G3J6Z7              	8.20%		
G3JPT2              	8.09%		
G3JT47              	8.09%		
G3JFB6              	6.45%		
Bootstrap support for G3JA78 as seed ortholog is 100%.
Bootstrap support for O84150 as seed ortholog is 100%.

Group of orthologs #167. Best score 50 bits
Score difference with first non-orthologous sequence - C.militaris:50 C.trachomatis:50

G3JTQ9              	100.00%		O84367              	100.00%
G3JCZ7              	16.63%		
Bootstrap support for G3JTQ9 as seed ortholog is 100%.
Bootstrap support for O84367 as seed ortholog is 100%.

Group of orthologs #168. Best score 50 bits
Score difference with first non-orthologous sequence - C.militaris:50 C.trachomatis:50

G3JDJ0              	100.00%		O84220              	100.00%
Bootstrap support for G3JDJ0 as seed ortholog is 100%.
Bootstrap support for O84220 as seed ortholog is 100%.

Group of orthologs #169. Best score 49 bits
Score difference with first non-orthologous sequence - C.militaris:49 C.trachomatis:49

G3JF80              	100.00%		O84029              	100.00%
Bootstrap support for G3JF80 as seed ortholog is 100%.
Bootstrap support for O84029 as seed ortholog is 100%.

Group of orthologs #170. Best score 48 bits
Score difference with first non-orthologous sequence - C.militaris:48 C.trachomatis:48

G3JIQ4              	100.00%		O84381              	100.00%
G3JH70              	45.33%		
Bootstrap support for G3JIQ4 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #171. Best score 45 bits
Score difference with first non-orthologous sequence - C.militaris:45 C.trachomatis:45

G3JFP0              	100.00%		O84608              	100.00%
Bootstrap support for G3JFP0 as seed ortholog is 100%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #172. Best score 44 bits
Score difference with first non-orthologous sequence - C.militaris:44 C.trachomatis:44

G3JRH8              	100.00%		O84138              	100.00%
G3JS34              	9.04%		
Bootstrap support for G3JRH8 as seed ortholog is 100%.
Bootstrap support for O84138 as seed ortholog is 100%.

Group of orthologs #173. Best score 44 bits
Score difference with first non-orthologous sequence - C.militaris:44 C.trachomatis:44

G3J301              	100.00%		P0CE06              	100.00%
Bootstrap support for G3J301 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #174. Best score 42 bits
Score difference with first non-orthologous sequence - C.militaris:42 C.trachomatis:42

G3JEN8              	100.00%		O84032              	100.00%
Bootstrap support for G3JEN8 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.

Group of orthologs #175. Best score 40 bits
Score difference with first non-orthologous sequence - C.militaris:40 C.trachomatis:40

G3JLJ1              	100.00%		O84750              	100.00%
Bootstrap support for G3JLJ1 as seed ortholog is 100%.
Bootstrap support for O84750 as seed ortholog is 100%.