###################################
352 groups of orthologs
536 in-paralogs from C.intestinalis
400 in-paralogs from P.kodakaraensis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 834 bits
Score difference with first non-orthologous sequence - C.intestinalis:382 P.kodakaraensis:834

F6QR00              	100.00%		Q5JE32              	100.00%
Bootstrap support for F6QR00 as seed ortholog is 100%.
Bootstrap support for Q5JE32 as seed ortholog is 100%.

Group of orthologs #2. Best score 587 bits
Score difference with first non-orthologous sequence - C.intestinalis:472 P.kodakaraensis:587

H2XJT5              	100.00%		Q5JIR3              	100.00%
Bootstrap support for H2XJT5 as seed ortholog is 100%.
Bootstrap support for Q5JIR3 as seed ortholog is 100%.

Group of orthologs #3. Best score 584 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.kodakaraensis:584

F6VLN4              	100.00%		Q5JE98              	100.00%
                    	       		Q9V2X2              	54.73%
Bootstrap support for F6VLN4 as seed ortholog is 99%.
Bootstrap support for Q5JE98 as seed ortholog is 100%.

Group of orthologs #4. Best score 570 bits
Score difference with first non-orthologous sequence - C.intestinalis:426 P.kodakaraensis:570

F7A8C2              	100.00%		Q5JIR2              	100.00%
Bootstrap support for F7A8C2 as seed ortholog is 100%.
Bootstrap support for Q5JIR2 as seed ortholog is 100%.

Group of orthologs #5. Best score 544 bits
Score difference with first non-orthologous sequence - C.intestinalis:388 P.kodakaraensis:544

F6U7R9              	100.00%		Q5JDF4              	100.00%
Bootstrap support for F6U7R9 as seed ortholog is 100%.
Bootstrap support for Q5JDF4 as seed ortholog is 100%.

Group of orthologs #6. Best score 537 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 P.kodakaraensis:537

F6THC9              	100.00%		Q5JIS8              	100.00%
Bootstrap support for F6THC9 as seed ortholog is 100%.
Bootstrap support for Q5JIS8 as seed ortholog is 100%.

Group of orthologs #7. Best score 533 bits
Score difference with first non-orthologous sequence - C.intestinalis:422 P.kodakaraensis:533

F6XZ43              	100.00%		Q5JDX6              	100.00%
Bootstrap support for F6XZ43 as seed ortholog is 100%.
Bootstrap support for Q5JDX6 as seed ortholog is 100%.

Group of orthologs #8. Best score 512 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 P.kodakaraensis:512

F7AKQ3              	100.00%		Q5JJ31              	100.00%
Bootstrap support for F7AKQ3 as seed ortholog is 99%.
Bootstrap support for Q5JJ31 as seed ortholog is 100%.

Group of orthologs #9. Best score 501 bits
Score difference with first non-orthologous sequence - C.intestinalis:365 P.kodakaraensis:501

F6YD90              	100.00%		Q8NKR7              	100.00%
Bootstrap support for F6YD90 as seed ortholog is 100%.
Bootstrap support for Q8NKR7 as seed ortholog is 100%.

Group of orthologs #10. Best score 487 bits
Score difference with first non-orthologous sequence - C.intestinalis:487 P.kodakaraensis:487

F6V5U6              	100.00%		Q5JGF1              	100.00%
Bootstrap support for F6V5U6 as seed ortholog is 100%.
Bootstrap support for Q5JGF1 as seed ortholog is 100%.

Group of orthologs #11. Best score 458 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.kodakaraensis:458

F6ZID9              	100.00%		Q5JFZ4              	100.00%
H2XZ08              	62.42%		
F6ZIF2              	60.13%		
H2XSX9              	58.87%		
Bootstrap support for F6ZID9 as seed ortholog is 99%.
Bootstrap support for Q5JFZ4 as seed ortholog is 100%.

Group of orthologs #12. Best score 451 bits
Score difference with first non-orthologous sequence - C.intestinalis:451 P.kodakaraensis:451

F6YQL6              	100.00%		Q5JCZ1              	100.00%
Bootstrap support for F6YQL6 as seed ortholog is 100%.
Bootstrap support for Q5JCZ1 as seed ortholog is 100%.

Group of orthologs #13. Best score 441 bits
Score difference with first non-orthologous sequence - C.intestinalis:330 P.kodakaraensis:324

F6XZ93              	100.00%		Q5JEV6              	100.00%
Bootstrap support for F6XZ93 as seed ortholog is 100%.
Bootstrap support for Q5JEV6 as seed ortholog is 100%.

Group of orthologs #14. Best score 439 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.kodakaraensis:439

F6XKY1              	100.00%		Q5JFZ3              	100.00%
F6WXT4              	10.33%		
Bootstrap support for F6XKY1 as seed ortholog is 99%.
Bootstrap support for Q5JFZ3 as seed ortholog is 100%.

Group of orthologs #15. Best score 413 bits
Score difference with first non-orthologous sequence - C.intestinalis:413 P.kodakaraensis:413

F6Y1Q3              	100.00%		Q5JIP3              	100.00%
Bootstrap support for F6Y1Q3 as seed ortholog is 100%.
Bootstrap support for Q5JIP3 as seed ortholog is 100%.

Group of orthologs #16. Best score 404 bits
Score difference with first non-orthologous sequence - C.intestinalis:263 P.kodakaraensis:404

H2XQX5              	100.00%		Q5JDZ7              	100.00%
Bootstrap support for H2XQX5 as seed ortholog is 100%.
Bootstrap support for Q5JDZ7 as seed ortholog is 100%.

Group of orthologs #17. Best score 393 bits
Score difference with first non-orthologous sequence - C.intestinalis:7 P.kodakaraensis:393

F6W7K5              	100.00%		Q52500              	100.00%
F6W7I3              	100.00%		P61111              	100.00%
Bootstrap support for F6W7K5 as seed ortholog is 57%.
Alternative seed ortholog is F6QX34 (7 bits away from this cluster)
Bootstrap support for F6W7I3 as seed ortholog is 52%.
Alternative seed ortholog is F6QX34 (7 bits away from this cluster)
Bootstrap support for Q52500 as seed ortholog is 100%.
Bootstrap support for P61111 as seed ortholog is 100%.

Group of orthologs #18. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:7 P.kodakaraensis:388

F6R8X1              	100.00%		Q5JGE5              	100.00%
Bootstrap support for F6R8X1 as seed ortholog is 56%.
Alternative seed ortholog is F6RHA1 (7 bits away from this cluster)
Bootstrap support for Q5JGE5 as seed ortholog is 100%.

Group of orthologs #19. Best score 385 bits
Score difference with first non-orthologous sequence - C.intestinalis:385 P.kodakaraensis:385

F6VC80              	100.00%		Q5JH71              	100.00%
Bootstrap support for F6VC80 as seed ortholog is 100%.
Bootstrap support for Q5JH71 as seed ortholog is 100%.

Group of orthologs #20. Best score 382 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.kodakaraensis:382

F6SG33              	100.00%		O93623              	100.00%
Bootstrap support for F6SG33 as seed ortholog is 86%.
Bootstrap support for O93623 as seed ortholog is 100%.

Group of orthologs #21. Best score 370 bits
Score difference with first non-orthologous sequence - C.intestinalis:370 P.kodakaraensis:370

F6Q9P9              	100.00%		Q5JID8              	100.00%
Bootstrap support for F6Q9P9 as seed ortholog is 100%.
Bootstrap support for Q5JID8 as seed ortholog is 100%.

Group of orthologs #22. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:28 P.kodakaraensis:366

F6THL0              	100.00%		Q5JIT1              	100.00%
Bootstrap support for F6THL0 as seed ortholog is 92%.
Bootstrap support for Q5JIT1 as seed ortholog is 100%.

Group of orthologs #23. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:366 P.kodakaraensis:366

F6VBU5              	100.00%		Q5JJC8              	100.00%
Bootstrap support for F6VBU5 as seed ortholog is 100%.
Bootstrap support for Q5JJC8 as seed ortholog is 100%.

Group of orthologs #24. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:2 P.kodakaraensis:366

F7ADN1              	100.00%		Q5JJA2              	100.00%
Bootstrap support for F7ADN1 as seed ortholog is 94%.
Bootstrap support for Q5JJA2 as seed ortholog is 100%.

Group of orthologs #25. Best score 353 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 P.kodakaraensis:353

F7BHP4              	100.00%		Q5JHS5              	100.00%
Bootstrap support for F7BHP4 as seed ortholog is 57%.
Alternative seed ortholog is F6UWX3 (6 bits away from this cluster)
Bootstrap support for Q5JHS5 as seed ortholog is 100%.

Group of orthologs #26. Best score 348 bits
Score difference with first non-orthologous sequence - C.intestinalis:220 P.kodakaraensis:348

F6YFY0              	100.00%		Q5JDL3              	100.00%
Bootstrap support for F6YFY0 as seed ortholog is 100%.
Bootstrap support for Q5JDL3 as seed ortholog is 100%.

Group of orthologs #27. Best score 339 bits
Score difference with first non-orthologous sequence - C.intestinalis:339 P.kodakaraensis:339

F6PX61              	100.00%		Q5JFR1              	100.00%
Bootstrap support for F6PX61 as seed ortholog is 100%.
Bootstrap support for Q5JFR1 as seed ortholog is 100%.

Group of orthologs #28. Best score 323 bits
Score difference with first non-orthologous sequence - C.intestinalis:323 P.kodakaraensis:323

H2XZ65              	100.00%		Q5JFN4              	100.00%
Bootstrap support for H2XZ65 as seed ortholog is 100%.
Bootstrap support for Q5JFN4 as seed ortholog is 100%.

Group of orthologs #29. Best score 321 bits
Score difference with first non-orthologous sequence - C.intestinalis:321 P.kodakaraensis:321

F6TWU9              	100.00%		Q5JIF8              	100.00%
F6Z6L6              	5.42%		
Bootstrap support for F6TWU9 as seed ortholog is 100%.
Bootstrap support for Q5JIF8 as seed ortholog is 100%.

Group of orthologs #30. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 P.kodakaraensis:311

H2XQE4              	100.00%		Q5JEW3              	100.00%
Bootstrap support for H2XQE4 as seed ortholog is 100%.
Bootstrap support for Q5JEW3 as seed ortholog is 100%.

Group of orthologs #31. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.kodakaraensis:305

F6Y4G4              	100.00%		Q5JHP3              	100.00%
Bootstrap support for F6Y4G4 as seed ortholog is 96%.
Bootstrap support for Q5JHP3 as seed ortholog is 100%.

Group of orthologs #32. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 P.kodakaraensis:305

H2Y2K4              	100.00%		Q5JI71              	100.00%
Bootstrap support for H2Y2K4 as seed ortholog is 100%.
Bootstrap support for Q5JI71 as seed ortholog is 100%.

Group of orthologs #33. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 P.kodakaraensis:304

F6XCK4              	100.00%		Q5JED2              	100.00%
F6SNC6              	22.24%		
Bootstrap support for F6XCK4 as seed ortholog is 100%.
Bootstrap support for Q5JED2 as seed ortholog is 100%.

Group of orthologs #34. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 P.kodakaraensis:299

H2XUE4              	100.00%		Q5JE75              	100.00%
Bootstrap support for H2XUE4 as seed ortholog is 100%.
Bootstrap support for Q5JE75 as seed ortholog is 100%.

Group of orthologs #35. Best score 291 bits
Score difference with first non-orthologous sequence - C.intestinalis:291 P.kodakaraensis:291

H2Y3D5              	100.00%		Q5JD45              	100.00%
Bootstrap support for H2Y3D5 as seed ortholog is 100%.
Bootstrap support for Q5JD45 as seed ortholog is 100%.

Group of orthologs #36. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 P.kodakaraensis:167

F6UR25              	100.00%		Q5JHX4              	100.00%
F6ZFS8              	25.48%		
Bootstrap support for F6UR25 as seed ortholog is 100%.
Bootstrap support for Q5JHX4 as seed ortholog is 99%.

Group of orthologs #37. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 P.kodakaraensis:290

F6UI47              	100.00%		Q76I93              	100.00%
Bootstrap support for F6UI47 as seed ortholog is 100%.
Bootstrap support for Q76I93 as seed ortholog is 100%.

Group of orthologs #38. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.kodakaraensis:285

F6WKD5              	100.00%		Q5JFK3              	100.00%
Bootstrap support for F6WKD5 as seed ortholog is 81%.
Bootstrap support for Q5JFK3 as seed ortholog is 100%.

Group of orthologs #39. Best score 271 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.kodakaraensis:271

F6PJX3              	100.00%		Q5JGN7              	100.00%
F6Q9K0              	11.66%		
Bootstrap support for F6PJX3 as seed ortholog is 80%.
Bootstrap support for Q5JGN7 as seed ortholog is 100%.

Group of orthologs #40. Best score 271 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 P.kodakaraensis:271

F6TD07              	100.00%		Q5JEY0              	100.00%
Bootstrap support for F6TD07 as seed ortholog is 100%.
Bootstrap support for Q5JEY0 as seed ortholog is 100%.

Group of orthologs #41. Best score 271 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.kodakaraensis:200

F7AYB9              	100.00%		Q52428              	100.00%
Bootstrap support for F7AYB9 as seed ortholog is 99%.
Bootstrap support for Q52428 as seed ortholog is 99%.

Group of orthologs #42. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 P.kodakaraensis:266

F6QI83              	100.00%		Q5JGN0              	100.00%
Bootstrap support for F6QI83 as seed ortholog is 100%.
Bootstrap support for Q5JGN0 as seed ortholog is 100%.

Group of orthologs #43. Best score 263 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.kodakaraensis:263

F6UQ90              	100.00%		Q5JHC1              	100.00%
Bootstrap support for F6UQ90 as seed ortholog is 93%.
Bootstrap support for Q5JHC1 as seed ortholog is 100%.

Group of orthologs #44. Best score 261 bits
Score difference with first non-orthologous sequence - C.intestinalis:261 P.kodakaraensis:261

F6U2M6              	100.00%		Q5JJE8              	100.00%
Bootstrap support for F6U2M6 as seed ortholog is 100%.
Bootstrap support for Q5JJE8 as seed ortholog is 100%.

Group of orthologs #45. Best score 257 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.kodakaraensis:257

F6S7U7              	100.00%		O59650              	100.00%
Bootstrap support for F6S7U7 as seed ortholog is 95%.
Bootstrap support for O59650 as seed ortholog is 100%.

Group of orthologs #46. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:13 P.kodakaraensis:255

F6XF93              	100.00%		Q5JFZ6              	100.00%
F6TMJ9              	48.39%		
Bootstrap support for F6XF93 as seed ortholog is 63%.
Alternative seed ortholog is F7AA42 (13 bits away from this cluster)
Bootstrap support for Q5JFZ6 as seed ortholog is 100%.

Group of orthologs #47. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.kodakaraensis:254

F7A7A0              	100.00%		Q5JEZ2              	100.00%
Bootstrap support for F7A7A0 as seed ortholog is 95%.
Bootstrap support for Q5JEZ2 as seed ortholog is 100%.

Group of orthologs #48. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 P.kodakaraensis:253

F6ZM86              	100.00%		Q5JJH1              	100.00%
Bootstrap support for F6ZM86 as seed ortholog is 100%.
Bootstrap support for Q5JJH1 as seed ortholog is 100%.

Group of orthologs #49. Best score 251 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.kodakaraensis:251

F6TJ71              	100.00%		Q5JHX1              	100.00%
Bootstrap support for F6TJ71 as seed ortholog is 99%.
Bootstrap support for Q5JHX1 as seed ortholog is 100%.

Group of orthologs #50. Best score 250 bits
Score difference with first non-orthologous sequence - C.intestinalis:250 P.kodakaraensis:130

F6PKA8              	100.00%		Q5JHM9              	100.00%
Bootstrap support for F6PKA8 as seed ortholog is 100%.
Bootstrap support for Q5JHM9 as seed ortholog is 99%.

Group of orthologs #51. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:247 P.kodakaraensis:247

F6PST3              	100.00%		Q5JGK6              	100.00%
Bootstrap support for F6PST3 as seed ortholog is 100%.
Bootstrap support for Q5JGK6 as seed ortholog is 100%.

Group of orthologs #52. Best score 245 bits
Score difference with first non-orthologous sequence - C.intestinalis:180 P.kodakaraensis:245

F6YCJ4              	100.00%		Q5JCX7              	100.00%
F7AFI4              	70.42%		
F6YGS0              	52.73%		
Bootstrap support for F6YCJ4 as seed ortholog is 100%.
Bootstrap support for Q5JCX7 as seed ortholog is 100%.

Group of orthologs #53. Best score 241 bits
Score difference with first non-orthologous sequence - C.intestinalis:241 P.kodakaraensis:241

F6Y8C3              	100.00%		Q5JHC6              	100.00%
Bootstrap support for F6Y8C3 as seed ortholog is 100%.
Bootstrap support for Q5JHC6 as seed ortholog is 100%.

Group of orthologs #54. Best score 241 bits
Score difference with first non-orthologous sequence - C.intestinalis:241 P.kodakaraensis:241

F7B580              	100.00%		Q76KA7              	100.00%
Bootstrap support for F7B580 as seed ortholog is 100%.
Bootstrap support for Q76KA7 as seed ortholog is 100%.

Group of orthologs #55. Best score 240 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.kodakaraensis:240

F7BHT5              	100.00%		Q5JJ64              	100.00%
F7AK90              	91.92%		
Bootstrap support for F7BHT5 as seed ortholog is 90%.
Bootstrap support for Q5JJ64 as seed ortholog is 100%.

Group of orthologs #56. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 P.kodakaraensis:238

F6WCR1              	100.00%		P77933              	100.00%
Bootstrap support for F6WCR1 as seed ortholog is 100%.
Bootstrap support for P77933 as seed ortholog is 100%.

Group of orthologs #57. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 P.kodakaraensis:237

F6PXA9              	100.00%		Q5JGV6              	100.00%
Bootstrap support for F6PXA9 as seed ortholog is 100%.
Bootstrap support for Q5JGV6 as seed ortholog is 100%.

Group of orthologs #58. Best score 232 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 P.kodakaraensis:232

F6TDD6              	100.00%		Q5JDJ5              	100.00%
Bootstrap support for F6TDD6 as seed ortholog is 100%.
Bootstrap support for Q5JDJ5 as seed ortholog is 100%.

Group of orthologs #59. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 P.kodakaraensis:231

F6V9G2              	100.00%		Q5JIY0              	100.00%
Bootstrap support for F6V9G2 as seed ortholog is 100%.
Bootstrap support for Q5JIY0 as seed ortholog is 100%.

Group of orthologs #60. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 P.kodakaraensis:228

F6UF05              	100.00%		Q76KA8              	100.00%
Bootstrap support for F6UF05 as seed ortholog is 100%.
Bootstrap support for Q76KA8 as seed ortholog is 100%.

Group of orthologs #61. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 P.kodakaraensis:227

F6WXA3              	100.00%		Q5JG59              	100.00%
F6WBI7              	69.97%		
F6Z6Y7              	8.95%		
H2XSE7              	7.85%		
F6S8U4              	7.71%		
F6W5P6              	7.44%		
F6Z7V5              	6.89%		
F6W6R6              	6.20%		
F6YJQ7              	5.51%		
Bootstrap support for F6WXA3 as seed ortholog is 96%.
Bootstrap support for Q5JG59 as seed ortholog is 100%.

Group of orthologs #62. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 P.kodakaraensis:227

F7AEZ3              	100.00%		Q5JD37              	100.00%
Bootstrap support for F7AEZ3 as seed ortholog is 100%.
Bootstrap support for Q5JD37 as seed ortholog is 100%.

Group of orthologs #63. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 P.kodakaraensis:221

F6Q601              	100.00%		Q5JF74              	100.00%
Bootstrap support for F6Q601 as seed ortholog is 100%.
Bootstrap support for Q5JF74 as seed ortholog is 100%.

Group of orthologs #64. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:36 P.kodakaraensis:112

F6YI87              	100.00%		Q5JDD8              	100.00%
Bootstrap support for F6YI87 as seed ortholog is 84%.
Bootstrap support for Q5JDD8 as seed ortholog is 99%.

Group of orthologs #65. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.kodakaraensis:221

H2XY03              	100.00%		Q5JGC4              	100.00%
Bootstrap support for H2XY03 as seed ortholog is 93%.
Bootstrap support for Q5JGC4 as seed ortholog is 100%.

Group of orthologs #66. Best score 218 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.kodakaraensis:218

F6TKR9              	100.00%		Q5JI69              	100.00%
Bootstrap support for F6TKR9 as seed ortholog is 98%.
Bootstrap support for Q5JI69 as seed ortholog is 100%.

Group of orthologs #67. Best score 215 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 P.kodakaraensis:159

F6W1L1              	100.00%		Q5JGQ7              	100.00%
F6QI37              	34.75%		
Bootstrap support for F6W1L1 as seed ortholog is 99%.
Bootstrap support for Q5JGQ7 as seed ortholog is 99%.

Group of orthologs #68. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 P.kodakaraensis:214

F6VSX4              	100.00%		Q5JGG5              	100.00%
F6V5T4              	60.25%		
F6W833              	41.49%		
L7N0R6              	40.37%		
H2Y1N3              	37.39%		
F6XCJ9              	36.89%		
F6W7L1              	35.65%		
Bootstrap support for F6VSX4 as seed ortholog is 100%.
Bootstrap support for Q5JGG5 as seed ortholog is 100%.

Group of orthologs #69. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 P.kodakaraensis:214

F6Z7L9              	100.00%		Q5JFW3              	100.00%
Bootstrap support for F6Z7L9 as seed ortholog is 99%.
Bootstrap support for Q5JFW3 as seed ortholog is 100%.

Group of orthologs #70. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 P.kodakaraensis:74

F6SHG8              	100.00%		Q5JGG2              	100.00%
Bootstrap support for F6SHG8 as seed ortholog is 100%.
Bootstrap support for Q5JGG2 as seed ortholog is 96%.

Group of orthologs #71. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:20 P.kodakaraensis:212

F6USH9              	100.00%		Q5JFM0              	100.00%
Bootstrap support for F6USH9 as seed ortholog is 74%.
Alternative seed ortholog is F6U1G1 (20 bits away from this cluster)
Bootstrap support for Q5JFM0 as seed ortholog is 100%.

Group of orthologs #72. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 P.kodakaraensis:212

F7A5J2              	100.00%		Q5JFN1              	100.00%
Bootstrap support for F7A5J2 as seed ortholog is 100%.
Bootstrap support for Q5JFN1 as seed ortholog is 100%.

Group of orthologs #73. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 P.kodakaraensis:209

F6Q096              	100.00%		Q5JDH2              	100.00%
Bootstrap support for F6Q096 as seed ortholog is 100%.
Bootstrap support for Q5JDH2 as seed ortholog is 100%.

Group of orthologs #74. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 P.kodakaraensis:207

H2XWF2              	100.00%		Q5JG47              	100.00%
Bootstrap support for H2XWF2 as seed ortholog is 99%.
Bootstrap support for Q5JG47 as seed ortholog is 100%.

Group of orthologs #75. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.kodakaraensis:144

F6QZB5              	100.00%		Q5JH24              	100.00%
F6W785              	14.37%		
Bootstrap support for F6QZB5 as seed ortholog is 99%.
Bootstrap support for Q5JH24 as seed ortholog is 99%.

Group of orthologs #76. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.kodakaraensis:204

I6L212              	100.00%		Q5JEQ6              	100.00%
                    	       		Q5JJB8              	13.90%
Bootstrap support for I6L212 as seed ortholog is 99%.
Bootstrap support for Q5JEQ6 as seed ortholog is 100%.

Group of orthologs #77. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 P.kodakaraensis:202

F6ZY44              	100.00%		Q5JIM2              	100.00%
Bootstrap support for F6ZY44 as seed ortholog is 100%.
Bootstrap support for Q5JIM2 as seed ortholog is 100%.

Group of orthologs #78. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.kodakaraensis:201

H2XT98              	100.00%		Q5JET4              	100.00%
Bootstrap support for H2XT98 as seed ortholog is 100%.
Bootstrap support for Q5JET4 as seed ortholog is 100%.

Group of orthologs #79. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 P.kodakaraensis:200

F6YKX8              	100.00%		Q5JDJ0              	100.00%
Bootstrap support for F6YKX8 as seed ortholog is 100%.
Bootstrap support for Q5JDJ0 as seed ortholog is 100%.

Group of orthologs #80. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.kodakaraensis:198

F6X7T3              	100.00%		Q5JID0              	100.00%
F6Y178              	47.48%		
F6U1B1              	28.09%		
Bootstrap support for F6X7T3 as seed ortholog is 100%.
Bootstrap support for Q5JID0 as seed ortholog is 100%.

Group of orthologs #81. Best score 197 bits
Score difference with first non-orthologous sequence - C.intestinalis:197 P.kodakaraensis:197

F6XTJ3              	100.00%		Q5JGF4              	100.00%
Bootstrap support for F6XTJ3 as seed ortholog is 100%.
Bootstrap support for Q5JGF4 as seed ortholog is 100%.

Group of orthologs #82. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:16 P.kodakaraensis:196

F6T0J5              	100.00%		Q5JIU9              	100.00%
Bootstrap support for F6T0J5 as seed ortholog is 55%.
Alternative seed ortholog is F6Z491 (16 bits away from this cluster)
Bootstrap support for Q5JIU9 as seed ortholog is 100%.

Group of orthologs #83. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.kodakaraensis:196

F6YND1              	100.00%		Q5JIG7              	100.00%
Bootstrap support for F6YND1 as seed ortholog is 100%.
Bootstrap support for Q5JIG7 as seed ortholog is 100%.

Group of orthologs #84. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.kodakaraensis:196

F6ZZF2              	100.00%		Q6F494              	100.00%
Bootstrap support for F6ZZF2 as seed ortholog is 100%.
Bootstrap support for Q6F494 as seed ortholog is 100%.

Group of orthologs #85. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.kodakaraensis:195

F7AJ78              	100.00%		Q5JGG6              	100.00%
F6XEV8              	10.36%		Q5JEW1              	15.37%
Bootstrap support for F7AJ78 as seed ortholog is 99%.
Bootstrap support for Q5JGG6 as seed ortholog is 100%.

Group of orthologs #86. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.kodakaraensis:195

F6X9G1              	100.00%		Q5JEK8              	100.00%
Bootstrap support for F6X9G1 as seed ortholog is 96%.
Bootstrap support for Q5JEK8 as seed ortholog is 100%.

Group of orthologs #87. Best score 194 bits
Score difference with first non-orthologous sequence - C.intestinalis:150 P.kodakaraensis:194

H2XZM3              	100.00%		Q5JDV8              	100.00%
Bootstrap support for H2XZM3 as seed ortholog is 99%.
Bootstrap support for Q5JDV8 as seed ortholog is 100%.

Group of orthologs #88. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.kodakaraensis:188

F6PK80              	100.00%		Q5JFM8              	100.00%
F6QWK4              	13.56%		
Bootstrap support for F6PK80 as seed ortholog is 83%.
Bootstrap support for Q5JFM8 as seed ortholog is 100%.

Group of orthologs #89. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 P.kodakaraensis:188

H2Y1Z9              	100.00%		Q5JIL7              	100.00%
H2XVW4              	13.05%		
Bootstrap support for H2Y1Z9 as seed ortholog is 100%.
Bootstrap support for Q5JIL7 as seed ortholog is 100%.

Group of orthologs #90. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.kodakaraensis:188

F6TGX7              	100.00%		Q5JIQ0              	100.00%
Bootstrap support for F6TGX7 as seed ortholog is 99%.
Bootstrap support for Q5JIQ0 as seed ortholog is 100%.

Group of orthologs #91. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 P.kodakaraensis:185

F6ST44              	100.00%		Q5JE24              	100.00%
                    	       		Q6F598              	5.41%
Bootstrap support for F6ST44 as seed ortholog is 98%.
Bootstrap support for Q5JE24 as seed ortholog is 100%.

Group of orthologs #92. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 P.kodakaraensis:122

F6ZFW2              	100.00%		Q5JE21              	100.00%
                    	       		Q5JF51              	9.98%
Bootstrap support for F6ZFW2 as seed ortholog is 90%.
Bootstrap support for Q5JE21 as seed ortholog is 99%.

Group of orthologs #93. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.kodakaraensis:185

F7BL51              	100.00%		Q5JF38              	100.00%
Bootstrap support for F7BL51 as seed ortholog is 99%.
Bootstrap support for Q5JF38 as seed ortholog is 100%.

Group of orthologs #94. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:4 P.kodakaraensis:185

H2Y0X5              	100.00%		Q5JEP5              	100.00%
Bootstrap support for H2Y0X5 as seed ortholog is 55%.
Alternative seed ortholog is F6W2L5 (4 bits away from this cluster)
Bootstrap support for Q5JEP5 as seed ortholog is 100%.

Group of orthologs #95. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 P.kodakaraensis:181

H2XXL7              	100.00%		Q5JFN0              	100.00%
F6U609              	18.19%		
Bootstrap support for H2XXL7 as seed ortholog is 100%.
Bootstrap support for Q5JFN0 as seed ortholog is 100%.

Group of orthologs #96. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.kodakaraensis:181

F6S6E8              	100.00%		Q5JGD1              	100.00%
Bootstrap support for F6S6E8 as seed ortholog is 99%.
Bootstrap support for Q5JGD1 as seed ortholog is 100%.

Group of orthologs #97. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.kodakaraensis:180

F6SYF4              	100.00%		Q5JJ82              	100.00%
Bootstrap support for F6SYF4 as seed ortholog is 99%.
Bootstrap support for Q5JJ82 as seed ortholog is 100%.

Group of orthologs #98. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.kodakaraensis:176

F7ACM5              	100.00%		Q5JGN1              	100.00%
                    	       		P58109              	57.32%
Bootstrap support for F7ACM5 as seed ortholog is 100%.
Bootstrap support for Q5JGN1 as seed ortholog is 100%.

Group of orthologs #99. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 P.kodakaraensis:174

F6SUS9              	100.00%		Q5JFV8              	100.00%
F6X7W0              	21.20%		
F6YNQ3              	17.49%		
Bootstrap support for F6SUS9 as seed ortholog is 100%.
Bootstrap support for Q5JFV8 as seed ortholog is 100%.

Group of orthologs #100. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 P.kodakaraensis:174

F6T9R1              	100.00%		Q5JJF3              	100.00%
Bootstrap support for F6T9R1 as seed ortholog is 100%.
Bootstrap support for Q5JJF3 as seed ortholog is 100%.

Group of orthologs #101. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 P.kodakaraensis:174

F6YM02              	100.00%		Q5JFE7              	100.00%
Bootstrap support for F6YM02 as seed ortholog is 100%.
Bootstrap support for Q5JFE7 as seed ortholog is 100%.

Group of orthologs #102. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 P.kodakaraensis:173

F6RNS7              	100.00%		Q5JE76              	100.00%
H2Y395              	9.84%		
F6U7Z2              	9.56%		
Bootstrap support for F6RNS7 as seed ortholog is 78%.
Bootstrap support for Q5JE76 as seed ortholog is 100%.

Group of orthologs #103. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.kodakaraensis:171

F6XKQ1              	100.00%		Q5JGS4              	100.00%
Bootstrap support for F6XKQ1 as seed ortholog is 100%.
Bootstrap support for Q5JGS4 as seed ortholog is 100%.

Group of orthologs #104. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 P.kodakaraensis:168

H2Y0A5              	100.00%		Q5JH43              	100.00%
Bootstrap support for H2Y0A5 as seed ortholog is 100%.
Bootstrap support for Q5JH43 as seed ortholog is 100%.

Group of orthologs #105. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 P.kodakaraensis:167

F6S399              	100.00%		Q5JH16              	100.00%
Bootstrap support for F6S399 as seed ortholog is 100%.
Bootstrap support for Q5JH16 as seed ortholog is 100%.

Group of orthologs #106. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 P.kodakaraensis:166

F6SIN5              	100.00%		Q5JE34              	100.00%
Bootstrap support for F6SIN5 as seed ortholog is 100%.
Bootstrap support for Q5JE34 as seed ortholog is 100%.

Group of orthologs #107. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.kodakaraensis:164

F6XQ02              	100.00%		Q5JHT1              	100.00%
Bootstrap support for F6XQ02 as seed ortholog is 90%.
Bootstrap support for Q5JHT1 as seed ortholog is 100%.

Group of orthologs #108. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 P.kodakaraensis:163

F6TLL4              	100.00%		Q5JFG9              	100.00%
Bootstrap support for F6TLL4 as seed ortholog is 100%.
Bootstrap support for Q5JFG9 as seed ortholog is 100%.

Group of orthologs #109. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.kodakaraensis:162

H2Y3Q6              	100.00%		Q5JDG3              	100.00%
Bootstrap support for H2Y3Q6 as seed ortholog is 100%.
Bootstrap support for Q5JDG3 as seed ortholog is 100%.

Group of orthologs #110. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:36 P.kodakaraensis:161

F6U062              	100.00%		Q5JF69              	100.00%
F6USW1              	15.76%		
Bootstrap support for F6U062 as seed ortholog is 99%.
Bootstrap support for Q5JF69 as seed ortholog is 100%.

Group of orthologs #111. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 P.kodakaraensis:161

H2XJF4              	100.00%		Q5JF06              	100.00%
Bootstrap support for H2XJF4 as seed ortholog is 100%.
Bootstrap support for Q5JF06 as seed ortholog is 100%.

Group of orthologs #112. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 P.kodakaraensis:161

H2XWE4              	100.00%		Q5JJG8              	100.00%
Bootstrap support for H2XWE4 as seed ortholog is 100%.
Bootstrap support for Q5JJG8 as seed ortholog is 100%.

Group of orthologs #113. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.kodakaraensis:158

F6SZY0              	100.00%		Q5JIB3              	100.00%
Bootstrap support for F6SZY0 as seed ortholog is 100%.
Bootstrap support for Q5JIB3 as seed ortholog is 100%.

Group of orthologs #114. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.kodakaraensis:158

F7A5R9              	100.00%		Q5JFR0              	100.00%
Bootstrap support for F7A5R9 as seed ortholog is 100%.
Bootstrap support for Q5JFR0 as seed ortholog is 100%.

Group of orthologs #115. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.kodakaraensis:158

H2XVS8              	100.00%		Q5JG03              	100.00%
Bootstrap support for H2XVS8 as seed ortholog is 100%.
Bootstrap support for Q5JG03 as seed ortholog is 100%.

Group of orthologs #116. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.kodakaraensis:155

F7B1Y1              	100.00%		Q5JE20              	100.00%
Q8I7D5              	94.93%		
Bootstrap support for F7B1Y1 as seed ortholog is 99%.
Bootstrap support for Q5JE20 as seed ortholog is 100%.

Group of orthologs #117. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.kodakaraensis:34

H2XQR7              	100.00%		Q5JIE4              	100.00%
Bootstrap support for H2XQR7 as seed ortholog is 88%.
Bootstrap support for Q5JIE4 as seed ortholog is 82%.

Group of orthologs #118. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.kodakaraensis:154

H2XKK7              	100.00%		Q5JIH2              	100.00%
F6SWY4              	12.50%		
F6Z370              	12.50%		
Bootstrap support for H2XKK7 as seed ortholog is 100%.
Bootstrap support for Q5JIH2 as seed ortholog is 100%.

Group of orthologs #119. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.kodakaraensis:154

F6TAR1              	100.00%		Q5JDV2              	100.00%
                    	       		Q5JDT7              	5.36%
Bootstrap support for F6TAR1 as seed ortholog is 100%.
Bootstrap support for Q5JDV2 as seed ortholog is 100%.

Group of orthologs #120. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.kodakaraensis:154

H2XNB1              	100.00%		Q5JHN5              	100.00%
Bootstrap support for H2XNB1 as seed ortholog is 100%.
Bootstrap support for Q5JHN5 as seed ortholog is 100%.

Group of orthologs #121. Best score 152 bits
Score difference with first non-orthologous sequence - C.intestinalis:152 P.kodakaraensis:152

F6ZLM3              	100.00%		Q5JH36              	100.00%
Bootstrap support for F6ZLM3 as seed ortholog is 100%.
Bootstrap support for Q5JH36 as seed ortholog is 100%.

Group of orthologs #122. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.kodakaraensis:151

F6SSM8              	100.00%		Q5JDI0              	100.00%
Bootstrap support for F6SSM8 as seed ortholog is 100%.
Bootstrap support for Q5JDI0 as seed ortholog is 100%.

Group of orthologs #123. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.kodakaraensis:151

F6SNL0              	100.00%		Q5JJG1              	100.00%
Bootstrap support for F6SNL0 as seed ortholog is 100%.
Bootstrap support for Q5JJG1 as seed ortholog is 100%.

Group of orthologs #124. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:30 P.kodakaraensis:151

F6TKH9              	100.00%		Q5JIR6              	100.00%
Bootstrap support for F6TKH9 as seed ortholog is 85%.
Bootstrap support for Q5JIR6 as seed ortholog is 100%.

Group of orthologs #125. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.kodakaraensis:151

H2XTB0              	100.00%		Q5JJD2              	100.00%
Bootstrap support for H2XTB0 as seed ortholog is 100%.
Bootstrap support for Q5JJD2 as seed ortholog is 100%.

Group of orthologs #126. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 P.kodakaraensis:150

F6YGF8              	100.00%		Q5JIR7              	100.00%
Bootstrap support for F6YGF8 as seed ortholog is 60%.
Alternative seed ortholog is F6PLY6 (9 bits away from this cluster)
Bootstrap support for Q5JIR7 as seed ortholog is 100%.

Group of orthologs #127. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.kodakaraensis:148

F6Q8V8              	100.00%		Q5JE04              	100.00%
Bootstrap support for F6Q8V8 as seed ortholog is 100%.
Bootstrap support for Q5JE04 as seed ortholog is 100%.

Group of orthologs #128. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.kodakaraensis:148

F6QWW6              	100.00%		Q5JH26              	100.00%
Bootstrap support for F6QWW6 as seed ortholog is 100%.
Bootstrap support for Q5JH26 as seed ortholog is 100%.

Group of orthologs #129. Best score 147 bits
Score difference with first non-orthologous sequence - C.intestinalis:147 P.kodakaraensis:147

F6RA65              	100.00%		Q5JHS7              	100.00%
Bootstrap support for F6RA65 as seed ortholog is 100%.
Bootstrap support for Q5JHS7 as seed ortholog is 100%.

Group of orthologs #130. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:35 P.kodakaraensis:146

F6PR96              	100.00%		Q5JH68              	100.00%
F6XGG4              	5.13%		
Bootstrap support for F6PR96 as seed ortholog is 87%.
Bootstrap support for Q5JH68 as seed ortholog is 100%.

Group of orthologs #131. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:145 P.kodakaraensis:145

F6X3S3              	100.00%		Q5JIB9              	100.00%
Bootstrap support for F6X3S3 as seed ortholog is 100%.
Bootstrap support for Q5JIB9 as seed ortholog is 100%.

Group of orthologs #132. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 P.kodakaraensis:143

H2XZT6              	100.00%		Q5JDB4              	100.00%
                    	       		Q5JDP5              	8.19%
Bootstrap support for H2XZT6 as seed ortholog is 100%.
Bootstrap support for Q5JDB4 as seed ortholog is 100%.

Group of orthologs #133. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:31 P.kodakaraensis:142

F6S4U2              	100.00%		Q5JEM6              	100.00%
Bootstrap support for F6S4U2 as seed ortholog is 79%.
Bootstrap support for Q5JEM6 as seed ortholog is 100%.

Group of orthologs #134. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 P.kodakaraensis:142

Q1RL58              	100.00%		Q9HHC4              	100.00%
Bootstrap support for Q1RL58 as seed ortholog is 100%.
Bootstrap support for Q9HHC4 as seed ortholog is 100%.

Group of orthologs #135. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 P.kodakaraensis:141

H2XL64              	100.00%		Q5JHN1              	100.00%
Bootstrap support for H2XL64 as seed ortholog is 100%.
Bootstrap support for Q5JHN1 as seed ortholog is 100%.

Group of orthologs #136. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.kodakaraensis:139

H2XU57              	100.00%		Q5JGJ4              	100.00%
Q8I7D6              	98.77%		
Bootstrap support for H2XU57 as seed ortholog is 100%.
Bootstrap support for Q5JGJ4 as seed ortholog is 100%.

Group of orthologs #137. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.kodakaraensis:139

F6TST6              	100.00%		Q5JE70              	100.00%
Bootstrap support for F6TST6 as seed ortholog is 100%.
Bootstrap support for Q5JE70 as seed ortholog is 100%.

Group of orthologs #138. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.kodakaraensis:139

F6WAW7              	100.00%		Q5JHP2              	100.00%
Bootstrap support for F6WAW7 as seed ortholog is 100%.
Bootstrap support for Q5JHP2 as seed ortholog is 100%.

Group of orthologs #139. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 P.kodakaraensis:138

F6SI53              	100.00%		Q5JFX8              	100.00%
Bootstrap support for F6SI53 as seed ortholog is 100%.
Bootstrap support for Q5JFX8 as seed ortholog is 100%.

Group of orthologs #140. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 P.kodakaraensis:138

F6XBT4              	100.00%		Q5JJG6              	100.00%
Bootstrap support for F6XBT4 as seed ortholog is 100%.
Bootstrap support for Q5JJG6 as seed ortholog is 100%.

Group of orthologs #141. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 P.kodakaraensis:138

F6Z3S0              	100.00%		Q5JGH7              	100.00%
Bootstrap support for F6Z3S0 as seed ortholog is 100%.
Bootstrap support for Q5JGH7 as seed ortholog is 100%.

Group of orthologs #142. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.kodakaraensis:138

H2XQ29              	100.00%		Q5JG15              	100.00%
Bootstrap support for H2XQ29 as seed ortholog is 99%.
Bootstrap support for Q5JG15 as seed ortholog is 100%.

Group of orthologs #143. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.kodakaraensis:137

F6PMY2              	100.00%		Q5JDV1              	100.00%
Bootstrap support for F6PMY2 as seed ortholog is 100%.
Bootstrap support for Q5JDV1 as seed ortholog is 100%.

Group of orthologs #144. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.kodakaraensis:137

F6QF37              	100.00%		Q5JIE6              	100.00%
Bootstrap support for F6QF37 as seed ortholog is 100%.
Bootstrap support for Q5JIE6 as seed ortholog is 100%.

Group of orthologs #145. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.kodakaraensis:136

F6YB01              	100.00%		Q5JGR7              	100.00%
F7BBQ5              	64.94%		
Bootstrap support for F6YB01 as seed ortholog is 98%.
Bootstrap support for Q5JGR7 as seed ortholog is 100%.

Group of orthologs #146. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 P.kodakaraensis:135

H2XQT6              	100.00%		Q5JEZ9              	100.00%
H2XYB3              	32.47%		Q5JH45              	7.06%
Bootstrap support for H2XQT6 as seed ortholog is 99%.
Bootstrap support for Q5JEZ9 as seed ortholog is 100%.

Group of orthologs #147. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.kodakaraensis:134

F6TXT5              	100.00%		Q5JDH5              	100.00%
Bootstrap support for F6TXT5 as seed ortholog is 100%.
Bootstrap support for Q5JDH5 as seed ortholog is 100%.

Group of orthologs #148. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.kodakaraensis:134

H2XZ35              	100.00%		Q5JEW7              	100.00%
Bootstrap support for H2XZ35 as seed ortholog is 100%.
Bootstrap support for Q5JEW7 as seed ortholog is 100%.

Group of orthologs #149. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.kodakaraensis:133

F6SI05              	100.00%		Q5JGC8              	100.00%
Bootstrap support for F6SI05 as seed ortholog is 97%.
Bootstrap support for Q5JGC8 as seed ortholog is 100%.

Group of orthologs #150. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 P.kodakaraensis:131

H2XQS5              	100.00%		Q5JF30              	100.00%
F7ADF2              	64.00%		
Bootstrap support for H2XQS5 as seed ortholog is 78%.
Bootstrap support for Q5JF30 as seed ortholog is 100%.

Group of orthologs #151. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 P.kodakaraensis:131

F7A1S8              	100.00%		Q5JEX2              	100.00%
Bootstrap support for F7A1S8 as seed ortholog is 100%.
Bootstrap support for Q5JEX2 as seed ortholog is 100%.

Group of orthologs #152. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 P.kodakaraensis:131

F7B2L3              	100.00%		Q5JDH3              	100.00%
Bootstrap support for F7B2L3 as seed ortholog is 100%.
Bootstrap support for Q5JDH3 as seed ortholog is 100%.

Group of orthologs #153. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.kodakaraensis:129

F6RN60              	100.00%		Q5JIF4              	100.00%
Bootstrap support for F6RN60 as seed ortholog is 100%.
Bootstrap support for Q5JIF4 as seed ortholog is 100%.

Group of orthologs #154. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.kodakaraensis:129

F6VYC6              	100.00%		Q5JF63              	100.00%
Bootstrap support for F6VYC6 as seed ortholog is 100%.
Bootstrap support for Q5JF63 as seed ortholog is 100%.

Group of orthologs #155. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.kodakaraensis:129

F7A9V2              	100.00%		Q5JIP8              	100.00%
Bootstrap support for F7A9V2 as seed ortholog is 100%.
Bootstrap support for Q5JIP8 as seed ortholog is 100%.

Group of orthologs #156. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 P.kodakaraensis:25

F6UFF5              	100.00%		Q5JES4              	100.00%
Bootstrap support for F6UFF5 as seed ortholog is 100%.
Bootstrap support for Q5JES4 as seed ortholog is 76%.

Group of orthologs #157. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:10 P.kodakaraensis:128

F7BH80              	100.00%		Q5JFM9              	100.00%
Bootstrap support for F7BH80 as seed ortholog is 61%.
Alternative seed ortholog is F6YCP6 (10 bits away from this cluster)
Bootstrap support for Q5JFM9 as seed ortholog is 100%.

Group of orthologs #158. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 P.kodakaraensis:128

F7BBF0              	100.00%		Q5JI98              	100.00%
Bootstrap support for F7BBF0 as seed ortholog is 100%.
Bootstrap support for Q5JI98 as seed ortholog is 100%.

Group of orthologs #159. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.kodakaraensis:127

F6VZF6              	100.00%		Q5JET7              	100.00%
Bootstrap support for F6VZF6 as seed ortholog is 95%.
Bootstrap support for Q5JET7 as seed ortholog is 100%.

Group of orthologs #160. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:39 P.kodakaraensis:127

H2XTF1              	100.00%		Q5JJC6              	100.00%
Bootstrap support for H2XTF1 as seed ortholog is 99%.
Bootstrap support for Q5JJC6 as seed ortholog is 100%.

Group of orthologs #161. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:34 P.kodakaraensis:126

H2Y2L0              	100.00%		Q5JEU9              	100.00%
F6S0N6              	5.25%		
Bootstrap support for H2Y2L0 as seed ortholog is 81%.
Bootstrap support for Q5JEU9 as seed ortholog is 100%.

Group of orthologs #162. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 P.kodakaraensis:125

F6WW36              	100.00%		Q5JIX4              	100.00%
H2XRG7              	100.00%		
Bootstrap support for F6WW36 as seed ortholog is 52%.
Alternative seed ortholog is F7B9X1 (3 bits away from this cluster)
Bootstrap support for H2XRG7 as seed ortholog is 52%.
Alternative seed ortholog is F7B9X1 (3 bits away from this cluster)
Bootstrap support for Q5JIX4 as seed ortholog is 100%.

Group of orthologs #163. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.kodakaraensis:125

F6PZD7              	100.00%		Q5JGB4              	100.00%
Bootstrap support for F6PZD7 as seed ortholog is 100%.
Bootstrap support for Q5JGB4 as seed ortholog is 100%.

Group of orthologs #164. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.kodakaraensis:60

F6XP34              	100.00%		Q5JGT2              	100.00%
                    	       		Q5JI45              	38.63%
Bootstrap support for F6XP34 as seed ortholog is 100%.
Bootstrap support for Q5JGT2 as seed ortholog is 95%.

Group of orthologs #165. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.kodakaraensis:124

F6Y9G9              	100.00%		Q5JFS0              	100.00%
F7ADG5              	79.54%		
Bootstrap support for F6Y9G9 as seed ortholog is 90%.
Bootstrap support for Q5JFS0 as seed ortholog is 100%.

Group of orthologs #166. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 P.kodakaraensis:123

F6Y0T9              	100.00%		Q5JF27              	100.00%
                    	       		Q5JFZ0              	10.92%
Bootstrap support for F6Y0T9 as seed ortholog is 100%.
Bootstrap support for Q5JF27 as seed ortholog is 100%.

Group of orthologs #167. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 P.kodakaraensis:123

H2XJL6              	100.00%		Q5JHE3              	100.00%
Bootstrap support for H2XJL6 as seed ortholog is 74%.
Alternative seed ortholog is H2XZS1 (22 bits away from this cluster)
Bootstrap support for Q5JHE3 as seed ortholog is 100%.

Group of orthologs #168. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.kodakaraensis:122

F6TC27              	100.00%		Q5JI97              	100.00%
F6Q0G0              	21.71%		
Bootstrap support for F6TC27 as seed ortholog is 100%.
Bootstrap support for Q5JI97 as seed ortholog is 100%.

Group of orthologs #169. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.kodakaraensis:122

F6SQQ1              	100.00%		Q5JGT4              	100.00%
Bootstrap support for F6SQQ1 as seed ortholog is 100%.
Bootstrap support for Q5JGT4 as seed ortholog is 100%.

Group of orthologs #170. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.kodakaraensis:122

F6ZN66              	100.00%		Q5JJG4              	100.00%
Bootstrap support for F6ZN66 as seed ortholog is 100%.
Bootstrap support for Q5JJG4 as seed ortholog is 100%.

Group of orthologs #171. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.kodakaraensis:121

F6VL61              	100.00%		Q5JIA2              	100.00%
F6VKS9              	34.71%		
Bootstrap support for F6VL61 as seed ortholog is 100%.
Bootstrap support for Q5JIA2 as seed ortholog is 100%.

Group of orthologs #172. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.kodakaraensis:121

F6UMT8              	100.00%		Q5JH48              	100.00%
Bootstrap support for F6UMT8 as seed ortholog is 100%.
Bootstrap support for Q5JH48 as seed ortholog is 100%.

Group of orthologs #173. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.kodakaraensis:120

F6XPZ4              	100.00%		Q52366              	100.00%
Bootstrap support for F6XPZ4 as seed ortholog is 97%.
Bootstrap support for Q52366 as seed ortholog is 100%.

Group of orthologs #174. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.kodakaraensis:119

H2Y0C0              	100.00%		Q5JEI4              	100.00%
Bootstrap support for H2Y0C0 as seed ortholog is 100%.
Bootstrap support for Q5JEI4 as seed ortholog is 100%.

Group of orthologs #175. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.kodakaraensis:118

F6QCQ5              	100.00%		Q5JDI9              	100.00%
Bootstrap support for F6QCQ5 as seed ortholog is 100%.
Bootstrap support for Q5JDI9 as seed ortholog is 100%.

Group of orthologs #176. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.kodakaraensis:118

F6PV45              	100.00%		Q5JH18              	100.00%
Bootstrap support for F6PV45 as seed ortholog is 100%.
Bootstrap support for Q5JH18 as seed ortholog is 100%.

Group of orthologs #177. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.kodakaraensis:118

F6PM63              	100.00%		Q5JIR1              	100.00%
Bootstrap support for F6PM63 as seed ortholog is 100%.
Bootstrap support for Q5JIR1 as seed ortholog is 100%.

Group of orthologs #178. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:19 P.kodakaraensis:118

F6YY15              	100.00%		Q5JJ98              	100.00%
Bootstrap support for F6YY15 as seed ortholog is 54%.
Alternative seed ortholog is H2XPN7 (19 bits away from this cluster)
Bootstrap support for Q5JJ98 as seed ortholog is 100%.

Group of orthologs #179. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.kodakaraensis:118

H2XN47              	100.00%		Q5JF75              	100.00%
Bootstrap support for H2XN47 as seed ortholog is 100%.
Bootstrap support for Q5JF75 as seed ortholog is 100%.

Group of orthologs #180. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 P.kodakaraensis:117

F6XKA2              	100.00%		Q5JCY9              	100.00%
                    	       		Q5JI15              	15.72%
Bootstrap support for F6XKA2 as seed ortholog is 76%.
Bootstrap support for Q5JCY9 as seed ortholog is 100%.

Group of orthologs #181. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.kodakaraensis:117

H2XVQ9              	100.00%		Q5JJF2              	100.00%
Bootstrap support for H2XVQ9 as seed ortholog is 99%.
Bootstrap support for Q5JJF2 as seed ortholog is 100%.

Group of orthologs #182. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 P.kodakaraensis:116

F6RKZ8              	100.00%		Q5JDB8              	100.00%
Bootstrap support for F6RKZ8 as seed ortholog is 100%.
Bootstrap support for Q5JDB8 as seed ortholog is 100%.

Group of orthologs #183. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 P.kodakaraensis:116

F6WB92              	100.00%		Q5JDP7              	100.00%
Bootstrap support for F6WB92 as seed ortholog is 100%.
Bootstrap support for Q5JDP7 as seed ortholog is 100%.

Group of orthologs #184. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 P.kodakaraensis:115

F6Z235              	100.00%		Q5JJF9              	100.00%
Bootstrap support for F6Z235 as seed ortholog is 100%.
Bootstrap support for Q5JJF9 as seed ortholog is 100%.

Group of orthologs #185. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:27 P.kodakaraensis:114

F6SD48              	100.00%		Q5JFD8              	100.00%
F6V693              	100.00%		Q5JIL6              	100.00%
F7AX01              	100.00%		
F6TN12              	67.29%		
F6YLJ0              	42.17%		
F6VIM5              	41.87%		
F6ZAB8              	40.99%		
F7AMK6              	40.39%		
F6ZTL3              	38.92%		
F6V9J8              	21.48%		
F6Z382              	17.78%		
Bootstrap support for F6SD48 as seed ortholog is 71%.
Alternative seed ortholog is F6YSD1 (27 bits away from this cluster)
Bootstrap support for F6V693 as seed ortholog is 48%.
Alternative seed ortholog is F6YSD1 (27 bits away from this cluster)
Bootstrap support for F7AX01 as seed ortholog is 55%.
Alternative seed ortholog is F6YSD1 (27 bits away from this cluster)
Bootstrap support for Q5JFD8 as seed ortholog is 100%.
Bootstrap support for Q5JIL6 as seed ortholog is 100%.

Group of orthologs #186. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 P.kodakaraensis:114

F6UUI8              	100.00%		Q5JHF7              	100.00%
                    	       		Q5JE68              	36.85%
Bootstrap support for F6UUI8 as seed ortholog is 100%.
Bootstrap support for Q5JHF7 as seed ortholog is 100%.

Group of orthologs #187. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 P.kodakaraensis:114

F6T5V0              	100.00%		Q5JGI1              	100.00%
Bootstrap support for F6T5V0 as seed ortholog is 100%.
Bootstrap support for Q5JGI1 as seed ortholog is 100%.

Group of orthologs #188. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.kodakaraensis:114

F6ZGV0              	100.00%		Q5JF43              	100.00%
Bootstrap support for F6ZGV0 as seed ortholog is 95%.
Bootstrap support for Q5JF43 as seed ortholog is 100%.

Group of orthologs #189. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 P.kodakaraensis:114

H2XY20              	100.00%		Q5JFJ9              	100.00%
Bootstrap support for H2XY20 as seed ortholog is 100%.
Bootstrap support for Q5JFJ9 as seed ortholog is 100%.

Group of orthologs #190. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.kodakaraensis:113

F6Q484              	100.00%		Q5JGN5              	100.00%
Bootstrap support for F6Q484 as seed ortholog is 100%.
Bootstrap support for Q5JGN5 as seed ortholog is 100%.

Group of orthologs #191. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:26 P.kodakaraensis:112

F6XVH7              	100.00%		Q5JIB6              	100.00%
                    	       		Q5JH42              	20.84%
Bootstrap support for F6XVH7 as seed ortholog is 77%.
Bootstrap support for Q5JIB6 as seed ortholog is 100%.

Group of orthologs #192. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.kodakaraensis:111

F6TXQ6              	100.00%		Q5JDI4              	100.00%
F6V198              	32.34%		
Bootstrap support for F6TXQ6 as seed ortholog is 100%.
Bootstrap support for Q5JDI4 as seed ortholog is 100%.

Group of orthologs #193. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.kodakaraensis:111

F6R356              	100.00%		Q5JDS2              	100.00%
Bootstrap support for F6R356 as seed ortholog is 100%.
Bootstrap support for Q5JDS2 as seed ortholog is 100%.

Group of orthologs #194. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.kodakaraensis:111

F6TXN5              	100.00%		Q5JIQ1              	100.00%
Bootstrap support for F6TXN5 as seed ortholog is 100%.
Bootstrap support for Q5JIQ1 as seed ortholog is 100%.

Group of orthologs #195. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.kodakaraensis:111

F6Y089              	100.00%		Q5JEX8              	100.00%
Bootstrap support for F6Y089 as seed ortholog is 100%.
Bootstrap support for Q5JEX8 as seed ortholog is 100%.

Group of orthologs #196. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:34 P.kodakaraensis:111

F7A5Y1              	100.00%		Q5JFK1              	100.00%
Bootstrap support for F7A5Y1 as seed ortholog is 82%.
Bootstrap support for Q5JFK1 as seed ortholog is 100%.

Group of orthologs #197. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 P.kodakaraensis:110

F6TEA0              	100.00%		O52958              	100.00%
F6R5L0              	25.55%		
Bootstrap support for F6TEA0 as seed ortholog is 90%.
Bootstrap support for O52958 as seed ortholog is 100%.

Group of orthologs #198. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.kodakaraensis:110

H2Y1Y8              	100.00%		Q5JJF8              	100.00%
Bootstrap support for H2Y1Y8 as seed ortholog is 100%.
Bootstrap support for Q5JJF8 as seed ortholog is 100%.

Group of orthologs #199. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.kodakaraensis:109

F6WBL5              	100.00%		Q5JDK2              	100.00%
F6WX88              	45.71%		
F6X9M4              	32.80%		
H2XL32              	28.78%		
F7AZV4              	28.47%		
F6Y9W3              	27.94%		
F6VSC2              	27.83%		
F6V5B4              	27.72%		
F6QN34              	27.41%		
F6SGT8              	27.30%		
F6UPM0              	26.88%		
F6XTN6              	26.88%		
H2XV07              	26.77%		
F6XQ30              	25.61%		
F6TAM4              	25.40%		
F6YPZ5              	24.34%		
F6SIE8              	22.54%		
F6YPI9              	21.80%		
F6VKE2              	20.95%		
F6XZF9              	18.73%		
F6TM37              	17.14%		
F7AFY1              	17.14%		
F6QSQ2              	17.04%		
F7BDN3              	17.04%		
F6SUX9              	7.51%		
F6T8C2              	6.03%		
Bootstrap support for F6WBL5 as seed ortholog is 100%.
Bootstrap support for Q5JDK2 as seed ortholog is 100%.

Group of orthologs #200. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:10 P.kodakaraensis:108

F6SJ40              	100.00%		Q5JFZ8              	100.00%
                    	       		Q5JGP4              	19.32%
                    	       		Q5JHY2              	10.95%
Bootstrap support for F6SJ40 as seed ortholog is 79%.
Bootstrap support for Q5JFZ8 as seed ortholog is 100%.

Group of orthologs #201. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 P.kodakaraensis:108

F6VPU4              	100.00%		Q5JFR2              	100.00%
Bootstrap support for F6VPU4 as seed ortholog is 100%.
Bootstrap support for Q5JFR2 as seed ortholog is 100%.

Group of orthologs #202. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 P.kodakaraensis:108

F6XER0              	100.00%		Q5JJC3              	100.00%
Bootstrap support for F6XER0 as seed ortholog is 100%.
Bootstrap support for Q5JJC3 as seed ortholog is 100%.

Group of orthologs #203. Best score 107 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 P.kodakaraensis:107

H2XXZ9              	100.00%		Q5JG04              	100.00%
Bootstrap support for H2XXZ9 as seed ortholog is 100%.
Bootstrap support for Q5JG04 as seed ortholog is 100%.

Group of orthologs #204. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:24 P.kodakaraensis:106

F6RC25              	100.00%		Q5JDJ9              	100.00%
                    	       		Q5JHL8              	22.30%
Bootstrap support for F6RC25 as seed ortholog is 82%.
Bootstrap support for Q5JDJ9 as seed ortholog is 100%.

Group of orthologs #205. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 P.kodakaraensis:105

F6R589              	100.00%		Q5JF32              	100.00%
                    	       		Q5JFD3              	43.73%
Bootstrap support for F6R589 as seed ortholog is 100%.
Bootstrap support for Q5JF32 as seed ortholog is 100%.

Group of orthologs #206. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 P.kodakaraensis:105

F7A172              	100.00%		Q5JJG7              	100.00%
Bootstrap support for F7A172 as seed ortholog is 100%.
Bootstrap support for Q5JJG7 as seed ortholog is 100%.

Group of orthologs #207. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 P.kodakaraensis:105

H2XXH1              	100.00%		Q5JJE2              	100.00%
Bootstrap support for H2XXH1 as seed ortholog is 100%.
Bootstrap support for Q5JJE2 as seed ortholog is 100%.

Group of orthologs #208. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 P.kodakaraensis:104

H2Y320              	100.00%		Q5JE01              	100.00%
Bootstrap support for H2Y320 as seed ortholog is 100%.
Bootstrap support for Q5JE01 as seed ortholog is 100%.

Group of orthologs #209. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.kodakaraensis:103

H2XZ54              	100.00%		Q5JJF4              	100.00%
F6Y5Q3              	34.38%		
Bootstrap support for H2XZ54 as seed ortholog is 100%.
Bootstrap support for Q5JJF4 as seed ortholog is 100%.

Group of orthologs #210. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.kodakaraensis:103

F6TZU9              	100.00%		Q5JH96              	100.00%
Bootstrap support for F6TZU9 as seed ortholog is 100%.
Bootstrap support for Q5JH96 as seed ortholog is 100%.

Group of orthologs #211. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:35 P.kodakaraensis:14

F7B860              	100.00%		Q5JHD4              	100.00%
F6ZIB9              	6.43%		Q5JE43              	21.58%
                    	       		Q5JGD3              	18.23%
                    	       		Q5JDD9              	13.43%
                    	       		Q5JFJ1              	8.15%
                    	       		Q5JF59              	7.19%
                    	       		Q5JIG9              	6.47%
                    	       		Q5JEP9              	5.28%
Bootstrap support for F7B860 as seed ortholog is 85%.
Bootstrap support for Q5JHD4 as seed ortholog is 65%.
Alternative seed ortholog is Q5JEM4 (14 bits away from this cluster)

Group of orthologs #212. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.kodakaraensis:102

F6UPC7              	100.00%		Q5JH35              	100.00%
Bootstrap support for F6UPC7 as seed ortholog is 99%.
Bootstrap support for Q5JH35 as seed ortholog is 100%.

Group of orthologs #213. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.kodakaraensis:102

F6ZA98              	100.00%		Q5JEX4              	100.00%
Bootstrap support for F6ZA98 as seed ortholog is 100%.
Bootstrap support for Q5JEX4 as seed ortholog is 100%.

Group of orthologs #214. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.kodakaraensis:102

F7B1W3              	100.00%		O74035              	100.00%
Bootstrap support for F7B1W3 as seed ortholog is 100%.
Bootstrap support for O74035 as seed ortholog is 100%.

Group of orthologs #215. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:26 P.kodakaraensis:101

F6Y7Y1              	100.00%		Q5JI09              	100.00%
H2XUY3              	15.77%		
H2XQH0              	14.17%		
F6ZRC6              	13.57%		
F6WI49              	9.18%		
F6U9C5              	5.19%		
Bootstrap support for F6Y7Y1 as seed ortholog is 76%.
Bootstrap support for Q5JI09 as seed ortholog is 100%.

Group of orthologs #216. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 P.kodakaraensis:101

H2XQI5              	100.00%		Q5JFL7              	100.00%
Bootstrap support for H2XQI5 as seed ortholog is 100%.
Bootstrap support for Q5JFL7 as seed ortholog is 100%.

Group of orthologs #217. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:11 P.kodakaraensis:101

H2Y3F1              	100.00%		Q5JGK8              	100.00%
Bootstrap support for H2Y3F1 as seed ortholog is 63%.
Alternative seed ortholog is H2XTW6 (11 bits away from this cluster)
Bootstrap support for Q5JGK8 as seed ortholog is 100%.

Group of orthologs #218. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 P.kodakaraensis:100

Q8HIM8              	100.00%		Q5JGJ2              	100.00%
                    	       		Q5JHU9              	18.38%
                    	       		Q5JGJ3              	9.13%
                    	       		Q5JDL7              	6.56%
Bootstrap support for Q8HIM8 as seed ortholog is 82%.
Bootstrap support for Q5JGJ2 as seed ortholog is 100%.

Group of orthologs #219. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.kodakaraensis:100

F6YRR0              	100.00%		Q5JJF6              	100.00%
Bootstrap support for F6YRR0 as seed ortholog is 100%.
Bootstrap support for Q5JJF6 as seed ortholog is 100%.

Group of orthologs #220. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.kodakaraensis:100

F7BDK3              	100.00%		Q5JH82              	100.00%
Bootstrap support for F7BDK3 as seed ortholog is 100%.
Bootstrap support for Q5JH82 as seed ortholog is 100%.

Group of orthologs #221. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.kodakaraensis:100

H2XT70              	100.00%		Q5JGT7              	100.00%
Bootstrap support for H2XT70 as seed ortholog is 100%.
Bootstrap support for Q5JGT7 as seed ortholog is 100%.

Group of orthologs #222. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 P.kodakaraensis:99

F6Q7P2              	100.00%		Q5JJ45              	100.00%
Bootstrap support for F6Q7P2 as seed ortholog is 60%.
Alternative seed ortholog is F6YYU4 (9 bits away from this cluster)
Bootstrap support for Q5JJ45 as seed ortholog is 100%.

Group of orthologs #223. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.kodakaraensis:99

F6SSL3              	100.00%		Q5JEQ8              	100.00%
Bootstrap support for F6SSL3 as seed ortholog is 100%.
Bootstrap support for Q5JEQ8 as seed ortholog is 100%.

Group of orthologs #224. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.kodakaraensis:99

H2XQG7              	100.00%		Q5JG02              	100.00%
Bootstrap support for H2XQG7 as seed ortholog is 100%.
Bootstrap support for Q5JG02 as seed ortholog is 100%.

Group of orthologs #225. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.kodakaraensis:98

F6Y0K7              	100.00%		Q5JHM0              	100.00%
F6UTV8              	8.13%		Q5JJC2              	13.36%
F7A0H4              	7.39%		
F6VCE5              	6.47%		
Bootstrap support for F6Y0K7 as seed ortholog is 100%.
Bootstrap support for Q5JHM0 as seed ortholog is 100%.

Group of orthologs #226. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.kodakaraensis:98

I6L7H7              	100.00%		Q5JD70              	100.00%
                    	       		Q5JHN7              	9.86%
Bootstrap support for I6L7H7 as seed ortholog is 100%.
Bootstrap support for Q5JD70 as seed ortholog is 100%.

Group of orthologs #227. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.kodakaraensis:97

F6W1X7              	100.00%		Q5JFW5              	100.00%
F6Z9B3              	23.76%		
Bootstrap support for F6W1X7 as seed ortholog is 100%.
Bootstrap support for Q5JFW5 as seed ortholog is 100%.

Group of orthologs #228. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 P.kodakaraensis:95

F6VKF0              	100.00%		Q5JFG2              	100.00%
                    	       		Q5JFG7              	57.83%
Bootstrap support for F6VKF0 as seed ortholog is 56%.
Alternative seed ortholog is F6SIG7 (6 bits away from this cluster)
Bootstrap support for Q5JFG2 as seed ortholog is 100%.

Group of orthologs #229. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 P.kodakaraensis:95

F6QWU8              	100.00%		Q5JEB7              	100.00%
Bootstrap support for F6QWU8 as seed ortholog is 100%.
Bootstrap support for Q5JEB7 as seed ortholog is 100%.

Group of orthologs #230. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.kodakaraensis:94

F7AED7              	100.00%		Q5JI34              	100.00%
F6UTP0              	27.59%		
H2XJS0              	18.27%		
F6TV75              	8.11%		
Bootstrap support for F7AED7 as seed ortholog is 100%.
Bootstrap support for Q5JI34 as seed ortholog is 100%.

Group of orthologs #231. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.kodakaraensis:94

H2XVN3              	100.00%		Q5JIZ7              	100.00%
Bootstrap support for H2XVN3 as seed ortholog is 100%.
Bootstrap support for Q5JIZ7 as seed ortholog is 100%.

Group of orthologs #232. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.kodakaraensis:93

F6RKR7              	100.00%		Q5JGZ7              	100.00%
Bootstrap support for F6RKR7 as seed ortholog is 100%.
Bootstrap support for Q5JGZ7 as seed ortholog is 100%.

Group of orthologs #233. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 P.kodakaraensis:93

F6ZVR2              	100.00%		Q76CZ2              	100.00%
Bootstrap support for F6ZVR2 as seed ortholog is 85%.
Bootstrap support for Q76CZ2 as seed ortholog is 100%.

Group of orthologs #234. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.kodakaraensis:92

F6Q5L2              	100.00%		Q5JIQ8              	100.00%
Bootstrap support for F6Q5L2 as seed ortholog is 100%.
Bootstrap support for Q5JIQ8 as seed ortholog is 100%.

Group of orthologs #235. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.kodakaraensis:92

F6TB52              	100.00%		Q5JDH4              	100.00%
Bootstrap support for F6TB52 as seed ortholog is 100%.
Bootstrap support for Q5JDH4 as seed ortholog is 100%.

Group of orthologs #236. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.kodakaraensis:92

F7AMW5              	100.00%		Q5JJG3              	100.00%
Bootstrap support for F7AMW5 as seed ortholog is 100%.
Bootstrap support for Q5JJG3 as seed ortholog is 100%.

Group of orthologs #237. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.kodakaraensis:91

F6S2C6              	100.00%		Q5JDH1              	100.00%
Bootstrap support for F6S2C6 as seed ortholog is 100%.
Bootstrap support for Q5JDH1 as seed ortholog is 100%.

Group of orthologs #238. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:21 P.kodakaraensis:91

F6YFM8              	100.00%		Q5JDV0              	100.00%
Bootstrap support for F6YFM8 as seed ortholog is 75%.
Bootstrap support for Q5JDV0 as seed ortholog is 100%.

Group of orthologs #239. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 P.kodakaraensis:90

Q8HIN2              	100.00%		Q5JGH6              	100.00%
                    	       		Q5JIL2              	11.22%
Bootstrap support for Q8HIN2 as seed ortholog is 100%.
Bootstrap support for Q5JGH6 as seed ortholog is 100%.

Group of orthologs #240. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.kodakaraensis:89

F6X8B5              	100.00%		Q5JET2              	100.00%
Bootstrap support for F6X8B5 as seed ortholog is 100%.
Bootstrap support for Q5JET2 as seed ortholog is 100%.

Group of orthologs #241. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 P.kodakaraensis:89

H2Y3L9              	100.00%		Q5JGR3              	100.00%
Bootstrap support for H2Y3L9 as seed ortholog is 98%.
Bootstrap support for Q5JGR3 as seed ortholog is 100%.

Group of orthologs #242. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 P.kodakaraensis:88

F6W0S4              	100.00%		Q5JI20              	100.00%
H2Y2I8              	14.42%		
Bootstrap support for F6W0S4 as seed ortholog is 100%.
Bootstrap support for Q5JI20 as seed ortholog is 100%.

Group of orthologs #243. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 P.kodakaraensis:88

F6Z1E3              	100.00%		Q5JGM4              	100.00%
Bootstrap support for F6Z1E3 as seed ortholog is 100%.
Bootstrap support for Q5JGM4 as seed ortholog is 100%.

Group of orthologs #244. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.kodakaraensis:87

F6Z0B9              	100.00%		Q5JD59              	100.00%
F6QFQ6              	55.82%		
Bootstrap support for F6Z0B9 as seed ortholog is 100%.
Bootstrap support for Q5JD59 as seed ortholog is 100%.

Group of orthologs #245. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.kodakaraensis:87

F6R0P0              	100.00%		Q5JFZ5              	100.00%
Bootstrap support for F6R0P0 as seed ortholog is 100%.
Bootstrap support for Q5JFZ5 as seed ortholog is 100%.

Group of orthologs #246. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.kodakaraensis:86

F6RCC2              	100.00%		Q5JER5              	100.00%
I6L237              	97.44%		
Bootstrap support for F6RCC2 as seed ortholog is 100%.
Bootstrap support for Q5JER5 as seed ortholog is 100%.

Group of orthologs #247. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:4 P.kodakaraensis:86

H2XJR2              	100.00%		Q5JJE5              	100.00%
F6WB20              	24.36%		
Bootstrap support for H2XJR2 as seed ortholog is 55%.
Alternative seed ortholog is F7AWY7 (4 bits away from this cluster)
Bootstrap support for Q5JJE5 as seed ortholog is 100%.

Group of orthologs #248. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.kodakaraensis:86

F6SU13              	100.00%		Q5JJG5              	100.00%
Bootstrap support for F6SU13 as seed ortholog is 100%.
Bootstrap support for Q5JJG5 as seed ortholog is 100%.

Group of orthologs #249. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.kodakaraensis:30

F6PNT4              	100.00%		Q5JH60              	100.00%
F6PNS0              	37.72%		
Bootstrap support for F6PNT4 as seed ortholog is 100%.
Bootstrap support for Q5JH60 as seed ortholog is 76%.

Group of orthologs #250. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.kodakaraensis:85

H2XSX6              	100.00%		Q5JGS7              	100.00%
Bootstrap support for H2XSX6 as seed ortholog is 100%.
Bootstrap support for Q5JGS7 as seed ortholog is 100%.

Group of orthologs #251. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:26 P.kodakaraensis:83

F6ZDC7              	100.00%		Q68BJ6              	100.00%
                    	       		Q68BJ7              	33.25%
                    	       		Q6I7B6              	29.46%
Bootstrap support for F6ZDC7 as seed ortholog is 71%.
Alternative seed ortholog is F6ZWW6 (26 bits away from this cluster)
Bootstrap support for Q68BJ6 as seed ortholog is 100%.

Group of orthologs #252. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.kodakaraensis:83

F6ZU97              	100.00%		Q5JI29              	100.00%
Bootstrap support for F6ZU97 as seed ortholog is 100%.
Bootstrap support for Q5JI29 as seed ortholog is 100%.

Group of orthologs #253. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:36 P.kodakaraensis:83

F7AZA1              	100.00%		Q5JHP6              	100.00%
Bootstrap support for F7AZA1 as seed ortholog is 91%.
Bootstrap support for Q5JHP6 as seed ortholog is 100%.

Group of orthologs #254. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:2 P.kodakaraensis:82

F6RGI4              	100.00%		Q5JH34              	100.00%
Bootstrap support for F6RGI4 as seed ortholog is 48%.
Alternative seed ortholog is F7AUH4 (2 bits away from this cluster)
Bootstrap support for Q5JH34 as seed ortholog is 100%.

Group of orthologs #255. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 P.kodakaraensis:82

H2XVC3              	100.00%		Q5JIA1              	100.00%
Bootstrap support for H2XVC3 as seed ortholog is 100%.
Bootstrap support for Q5JIA1 as seed ortholog is 100%.

Group of orthologs #256. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:30 P.kodakaraensis:81

F6T0V1              	100.00%		Q5JHS6              	100.00%
F6TL82              	37.25%		
H2XV23              	6.44%		
H2XWF3              	6.19%		
F6ZCN2              	5.69%		
F6ZST9              	5.20%		
Bootstrap support for F6T0V1 as seed ortholog is 67%.
Alternative seed ortholog is H2XVY9 (30 bits away from this cluster)
Bootstrap support for Q5JHS6 as seed ortholog is 100%.

Group of orthologs #257. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.kodakaraensis:81

F7AG43              	100.00%		Q5JDS0              	100.00%
Bootstrap support for F7AG43 as seed ortholog is 100%.
Bootstrap support for Q5JDS0 as seed ortholog is 100%.

Group of orthologs #258. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.kodakaraensis:81

F7AW07              	100.00%		Q5JCY8              	100.00%
Bootstrap support for F7AW07 as seed ortholog is 100%.
Bootstrap support for Q5JCY8 as seed ortholog is 100%.

Group of orthologs #259. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 P.kodakaraensis:81

H2XK75              	100.00%		Q5JJB9              	100.00%
Bootstrap support for H2XK75 as seed ortholog is 47%.
Alternative seed ortholog is F6QAL4 (1 bits away from this cluster)
Bootstrap support for Q5JJB9 as seed ortholog is 100%.

Group of orthologs #260. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.kodakaraensis:79

F6PN41              	100.00%		Q5JIY3              	100.00%
Bootstrap support for F6PN41 as seed ortholog is 100%.
Bootstrap support for Q5JIY3 as seed ortholog is 100%.

Group of orthologs #261. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.kodakaraensis:79

F7BI62              	100.00%		Q5JGF6              	100.00%
Bootstrap support for F7BI62 as seed ortholog is 100%.
Bootstrap support for Q5JGF6 as seed ortholog is 100%.

Group of orthologs #262. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.kodakaraensis:78

F6WJQ0              	100.00%		Q5JDI6              	100.00%
Bootstrap support for F6WJQ0 as seed ortholog is 100%.
Bootstrap support for Q5JDI6 as seed ortholog is 100%.

Group of orthologs #263. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.kodakaraensis:78

F6Z2I4              	100.00%		Q5JH39              	100.00%
Bootstrap support for F6Z2I4 as seed ortholog is 100%.
Bootstrap support for Q5JH39 as seed ortholog is 100%.

Group of orthologs #264. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.kodakaraensis:77

F6SN27              	100.00%		Q5JI54              	100.00%
Bootstrap support for F6SN27 as seed ortholog is 100%.
Bootstrap support for Q5JI54 as seed ortholog is 100%.

Group of orthologs #265. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.kodakaraensis:77

F6V9A1              	100.00%		Q5JDH9              	100.00%
Bootstrap support for F6V9A1 as seed ortholog is 100%.
Bootstrap support for Q5JDH9 as seed ortholog is 100%.

Group of orthologs #266. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 P.kodakaraensis:76

F6UHV9              	100.00%		Q5JFI2              	100.00%
F6YDI9              	31.21%		
F6RAB3              	29.59%		
Bootstrap support for F6UHV9 as seed ortholog is 65%.
Alternative seed ortholog is F6WGN7 (15 bits away from this cluster)
Bootstrap support for Q5JFI2 as seed ortholog is 100%.

Group of orthologs #267. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.kodakaraensis:76

F6SVP7              	100.00%		Q5JDB6              	100.00%
F6PJM3              	8.07%		
Bootstrap support for F6SVP7 as seed ortholog is 100%.
Bootstrap support for Q5JDB6 as seed ortholog is 100%.

Group of orthologs #268. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.kodakaraensis:76

F6Q9P1              	100.00%		Q5JG26              	100.00%
Bootstrap support for F6Q9P1 as seed ortholog is 100%.
Bootstrap support for Q5JG26 as seed ortholog is 100%.

Group of orthologs #269. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.kodakaraensis:76

F6SVN8              	100.00%		Q5JEE1              	100.00%
Bootstrap support for F6SVN8 as seed ortholog is 100%.
Bootstrap support for Q5JEE1 as seed ortholog is 100%.

Group of orthologs #270. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 P.kodakaraensis:75

F6XU15              	100.00%		Q5JJ26              	100.00%
F7BPQ7              	100.00%		Q5JH70              	100.00%
Bootstrap support for F6XU15 as seed ortholog is 100%.
Bootstrap support for F7BPQ7 as seed ortholog is 100%.
Bootstrap support for Q5JJ26 as seed ortholog is 100%.
Bootstrap support for Q5JH70 as seed ortholog is 100%.

Group of orthologs #271. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.kodakaraensis:74

F7B330              	100.00%		Q5JJ83              	100.00%
                    	       		Q5JIM4              	12.21%
                    	       		Q5JIM5              	11.18%
Bootstrap support for F7B330 as seed ortholog is 100%.
Bootstrap support for Q5JJ83 as seed ortholog is 100%.

Group of orthologs #272. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.kodakaraensis:74

F6TLE4              	100.00%		Q5JI92              	100.00%
Bootstrap support for F6TLE4 as seed ortholog is 100%.
Bootstrap support for Q5JI92 as seed ortholog is 100%.

Group of orthologs #273. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.kodakaraensis:74

F6UA87              	100.00%		Q5JHR7              	100.00%
Bootstrap support for F6UA87 as seed ortholog is 100%.
Bootstrap support for Q5JHR7 as seed ortholog is 100%.

Group of orthologs #274. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.kodakaraensis:74

F6Y6W3              	100.00%		Q5JIR5              	100.00%
Bootstrap support for F6Y6W3 as seed ortholog is 100%.
Bootstrap support for Q5JIR5 as seed ortholog is 100%.

Group of orthologs #275. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.kodakaraensis:74

Q1RPU6              	100.00%		Q5JF34              	100.00%
Bootstrap support for Q1RPU6 as seed ortholog is 100%.
Bootstrap support for Q5JF34 as seed ortholog is 100%.

Group of orthologs #276. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.kodakaraensis:73

F6RAN6              	100.00%		Q5JI44              	100.00%
Bootstrap support for F6RAN6 as seed ortholog is 100%.
Bootstrap support for Q5JI44 as seed ortholog is 100%.

Group of orthologs #277. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.kodakaraensis:73

F6SK91              	100.00%		Q5JH21              	100.00%
Bootstrap support for F6SK91 as seed ortholog is 100%.
Bootstrap support for Q5JH21 as seed ortholog is 100%.

Group of orthologs #278. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.kodakaraensis:73

F6TNU2              	100.00%		Q877I0              	100.00%
Bootstrap support for F6TNU2 as seed ortholog is 100%.
Bootstrap support for Q877I0 as seed ortholog is 100%.

Group of orthologs #279. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.kodakaraensis:72

F6U3K8              	100.00%		Q5JJ28              	100.00%
Bootstrap support for F6U3K8 as seed ortholog is 100%.
Bootstrap support for Q5JJ28 as seed ortholog is 100%.

Group of orthologs #280. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.kodakaraensis:72

F6XNG1              	100.00%		Q5JDV9              	100.00%
Bootstrap support for F6XNG1 as seed ortholog is 100%.
Bootstrap support for Q5JDV9 as seed ortholog is 100%.

Group of orthologs #281. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.kodakaraensis:72

F6WBA4              	100.00%		Q5JHS3              	100.00%
Bootstrap support for F6WBA4 as seed ortholog is 100%.
Bootstrap support for Q5JHS3 as seed ortholog is 100%.

Group of orthologs #282. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.kodakaraensis:72

F6Y6X7              	100.00%		Q5JJH0              	100.00%
Bootstrap support for F6Y6X7 as seed ortholog is 100%.
Bootstrap support for Q5JJH0 as seed ortholog is 100%.

Group of orthologs #283. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.kodakaraensis:71

F6UH30              	100.00%		Q5JFW9              	100.00%
F7BBJ9              	18.02%		
Bootstrap support for F6UH30 as seed ortholog is 100%.
Bootstrap support for Q5JFW9 as seed ortholog is 100%.

Group of orthologs #284. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.kodakaraensis:71

F6X0N8              	100.00%		Q5JDG1              	100.00%
L7N0S6              	90.78%		
Bootstrap support for F6X0N8 as seed ortholog is 100%.
Bootstrap support for Q5JDG1 as seed ortholog is 100%.

Group of orthologs #285. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:7 P.kodakaraensis:71

F6WYE6              	100.00%		Q5JF76              	100.00%
Bootstrap support for F6WYE6 as seed ortholog is 57%.
Alternative seed ortholog is F6Y011 (7 bits away from this cluster)
Bootstrap support for Q5JF76 as seed ortholog is 100%.

Group of orthologs #286. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 P.kodakaraensis:70

F6T310              	100.00%		Q5JE39              	100.00%
F6VUN5              	11.32%		Q5JD05              	14.75%
Bootstrap support for F6T310 as seed ortholog is 100%.
Bootstrap support for Q5JE39 as seed ortholog is 100%.

Group of orthologs #287. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 P.kodakaraensis:70

F6ZED0              	100.00%		Q5JGN3              	100.00%
Bootstrap support for F6ZED0 as seed ortholog is 100%.
Bootstrap support for Q5JGN3 as seed ortholog is 100%.

Group of orthologs #288. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.kodakaraensis:69

H2XJN2              	100.00%		P95547              	100.00%
Bootstrap support for H2XJN2 as seed ortholog is 100%.
Bootstrap support for P95547 as seed ortholog is 100%.

Group of orthologs #289. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.kodakaraensis:69

F7BK27              	100.00%		Q5JE55              	100.00%
Bootstrap support for F7BK27 as seed ortholog is 100%.
Bootstrap support for Q5JE55 as seed ortholog is 100%.

Group of orthologs #290. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:25 P.kodakaraensis:68

F6R2F1              	100.00%		Q5JIE9              	100.00%
F7A2Q0              	7.59%		
Bootstrap support for F6R2F1 as seed ortholog is 77%.
Bootstrap support for Q5JIE9 as seed ortholog is 100%.

Group of orthologs #291. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 P.kodakaraensis:68

H2XUI3              	100.00%		Q5JE86              	100.00%
Bootstrap support for H2XUI3 as seed ortholog is 100%.
Bootstrap support for Q5JE86 as seed ortholog is 100%.

Group of orthologs #292. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.kodakaraensis:66

F6RHG2              	100.00%		Q5JDC4              	100.00%
Bootstrap support for F6RHG2 as seed ortholog is 100%.
Bootstrap support for Q5JDC4 as seed ortholog is 100%.

Group of orthologs #293. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.kodakaraensis:66

F6UUA2              	100.00%		Q5JIJ0              	100.00%
Bootstrap support for F6UUA2 as seed ortholog is 100%.
Bootstrap support for Q5JIJ0 as seed ortholog is 100%.

Group of orthologs #294. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.kodakaraensis:66

F6Z897              	100.00%		Q5JE35              	100.00%
Bootstrap support for F6Z897 as seed ortholog is 100%.
Bootstrap support for Q5JE35 as seed ortholog is 100%.

Group of orthologs #295. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.kodakaraensis:65

F6QWP6              	100.00%		Q5JHT4              	100.00%
Bootstrap support for F6QWP6 as seed ortholog is 100%.
Bootstrap support for Q5JHT4 as seed ortholog is 100%.

Group of orthologs #296. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.kodakaraensis:65

F6YMZ5              	100.00%		Q5JGR4              	100.00%
Bootstrap support for F6YMZ5 as seed ortholog is 100%.
Bootstrap support for Q5JGR4 as seed ortholog is 100%.

Group of orthologs #297. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.kodakaraensis:65

F7APS6              	100.00%		Q5JIX5              	100.00%
Bootstrap support for F7APS6 as seed ortholog is 100%.
Bootstrap support for Q5JIX5 as seed ortholog is 100%.

Group of orthologs #298. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.kodakaraensis:64

F6SRF9              	100.00%		Q5JFX3              	100.00%
F6RKY2              	15.38%		
Bootstrap support for F6SRF9 as seed ortholog is 100%.
Bootstrap support for Q5JFX3 as seed ortholog is 100%.

Group of orthologs #299. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.kodakaraensis:62

F6UG66              	100.00%		Q5JDM6              	100.00%
Bootstrap support for F6UG66 as seed ortholog is 100%.
Bootstrap support for Q5JDM6 as seed ortholog is 100%.

Group of orthologs #300. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 P.kodakaraensis:62

F6XDT3              	100.00%		Q5JDG9              	100.00%
Bootstrap support for F6XDT3 as seed ortholog is 64%.
Alternative seed ortholog is F7BN93 (12 bits away from this cluster)
Bootstrap support for Q5JDG9 as seed ortholog is 100%.

Group of orthologs #301. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.kodakaraensis:62

F6YA95              	100.00%		Q5JJ72              	100.00%
Bootstrap support for F6YA95 as seed ortholog is 100%.
Bootstrap support for Q5JJ72 as seed ortholog is 100%.

Group of orthologs #302. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.kodakaraensis:61

F6ZC01              	100.00%		Q5JHS0              	100.00%
Bootstrap support for F6ZC01 as seed ortholog is 100%.
Bootstrap support for Q5JHS0 as seed ortholog is 100%.

Group of orthologs #303. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.kodakaraensis:60

F6WUG3              	100.00%		Q5JHT3              	100.00%
Bootstrap support for F6WUG3 as seed ortholog is 100%.
Bootstrap support for Q5JHT3 as seed ortholog is 100%.

Group of orthologs #304. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 P.kodakaraensis:60

F6WM99              	100.00%		Q5JIY4              	100.00%
Bootstrap support for F6WM99 as seed ortholog is 51%.
Alternative seed ortholog is F6ZQ58 (1 bits away from this cluster)
Bootstrap support for Q5JIY4 as seed ortholog is 100%.

Group of orthologs #305. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.kodakaraensis:60

F6Y7E9              	100.00%		Q5JJG9              	100.00%
Bootstrap support for F6Y7E9 as seed ortholog is 100%.
Bootstrap support for Q5JJG9 as seed ortholog is 100%.

Group of orthologs #306. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.kodakaraensis:6

F6Z768              	100.00%		Q5JJ27              	100.00%
Bootstrap support for F6Z768 as seed ortholog is 100%.
Bootstrap support for Q5JJ27 as seed ortholog is 38%.
Alternative seed ortholog is Q5JJ22 (6 bits away from this cluster)

Group of orthologs #307. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.kodakaraensis:58

F7AN60              	100.00%		Q5JE10              	100.00%
F6PH94              	29.89%		
F6VAL7              	26.57%		
F6V2M0              	22.14%		
H2XS39              	15.38%		
Bootstrap support for F7AN60 as seed ortholog is 100%.
Bootstrap support for Q5JE10 as seed ortholog is 100%.

Group of orthologs #308. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.kodakaraensis:58

F6WZ37              	100.00%		Q5JGT6              	100.00%
Bootstrap support for F6WZ37 as seed ortholog is 100%.
Bootstrap support for Q5JGT6 as seed ortholog is 100%.

Group of orthologs #309. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.kodakaraensis:58

F6YB21              	100.00%		Q5JE51              	100.00%
Bootstrap support for F6YB21 as seed ortholog is 100%.
Bootstrap support for Q5JE51 as seed ortholog is 100%.

Group of orthologs #310. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.kodakaraensis:57

F6TJ64              	100.00%		Q5JH80              	100.00%
Bootstrap support for F6TJ64 as seed ortholog is 100%.
Bootstrap support for Q5JH80 as seed ortholog is 100%.

Group of orthologs #311. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 P.kodakaraensis:57

F6TKL9              	100.00%		Q5JH93              	100.00%
Bootstrap support for F6TKL9 as seed ortholog is 69%.
Alternative seed ortholog is F6ZW37 (15 bits away from this cluster)
Bootstrap support for Q5JH93 as seed ortholog is 100%.

Group of orthologs #312. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 P.kodakaraensis:56

H2XZ38              	100.00%		Q5JEC9              	100.00%
Bootstrap support for H2XZ38 as seed ortholog is 100%.
Bootstrap support for Q5JEC9 as seed ortholog is 100%.

Group of orthologs #313. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 P.kodakaraensis:55

H2Y3J5              	100.00%		Q5JHQ2              	100.00%
                    	       		Q5JGN8              	6.47%
Bootstrap support for H2Y3J5 as seed ortholog is 66%.
Alternative seed ortholog is F7AMD9 (12 bits away from this cluster)
Bootstrap support for Q5JHQ2 as seed ortholog is 100%.

Group of orthologs #314. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.kodakaraensis:55

F7BME9              	100.00%		Q5JI19              	100.00%
Bootstrap support for F7BME9 as seed ortholog is 100%.
Bootstrap support for Q5JI19 as seed ortholog is 100%.

Group of orthologs #315. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.kodakaraensis:55

H2Y060              	100.00%		Q5JII2              	100.00%
Bootstrap support for H2Y060 as seed ortholog is 100%.
Bootstrap support for Q5JII2 as seed ortholog is 100%.

Group of orthologs #316. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.kodakaraensis:54

F6U899              	100.00%		Q5JGM7              	100.00%
Bootstrap support for F6U899 as seed ortholog is 100%.
Bootstrap support for Q5JGM7 as seed ortholog is 100%.

Group of orthologs #317. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:8 P.kodakaraensis:53

F6X139              	100.00%		Q5JFY8              	100.00%
F6X7G6              	30.65%		
Bootstrap support for F6X139 as seed ortholog is 61%.
Alternative seed ortholog is H2XYN6 (8 bits away from this cluster)
Bootstrap support for Q5JFY8 as seed ortholog is 100%.

Group of orthologs #318. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 P.kodakaraensis:53

F6ZBF1              	100.00%		Q5JEE0              	100.00%
Bootstrap support for F6ZBF1 as seed ortholog is 100%.
Bootstrap support for Q5JEE0 as seed ortholog is 100%.

Group of orthologs #319. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 P.kodakaraensis:53

H2Y104              	100.00%		Q5JG44              	100.00%
Bootstrap support for H2Y104 as seed ortholog is 100%.
Bootstrap support for Q5JG44 as seed ortholog is 100%.

Group of orthologs #320. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.kodakaraensis:52

F6U0I8              	100.00%		Q5JJ91              	100.00%
F6QJQ8              	21.93%		
Bootstrap support for F6U0I8 as seed ortholog is 100%.
Bootstrap support for Q5JJ91 as seed ortholog is 100%.

Group of orthologs #321. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.kodakaraensis:52

F6WH15              	100.00%		Q5JIY8              	100.00%
Bootstrap support for F6WH15 as seed ortholog is 100%.
Bootstrap support for Q5JIY8 as seed ortholog is 100%.

Group of orthologs #322. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.kodakaraensis:52

F6YBU7              	100.00%		Q5JH78              	100.00%
Bootstrap support for F6YBU7 as seed ortholog is 100%.
Bootstrap support for Q5JH78 as seed ortholog is 100%.

Group of orthologs #323. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.kodakaraensis:52

H2XPA7              	100.00%		Q5JJC1              	100.00%
Bootstrap support for H2XPA7 as seed ortholog is 100%.
Bootstrap support for Q5JJC1 as seed ortholog is 100%.

Group of orthologs #324. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:5 P.kodakaraensis:52

H2XU15              	100.00%		Q8X270              	100.00%
Bootstrap support for H2XU15 as seed ortholog is 59%.
Alternative seed ortholog is H2XNI2 (5 bits away from this cluster)
Bootstrap support for Q8X270 as seed ortholog is 100%.

Group of orthologs #325. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.kodakaraensis:51

H2XRW4              	100.00%		Q5JIL1              	100.00%
                    	       		Q5JGG3              	12.05%
Bootstrap support for H2XRW4 as seed ortholog is 100%.
Bootstrap support for Q5JIL1 as seed ortholog is 100%.

Group of orthologs #326. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.kodakaraensis:51

H2XSN3              	100.00%		Q5JFV5              	100.00%
Bootstrap support for H2XSN3 as seed ortholog is 100%.
Bootstrap support for Q5JFV5 as seed ortholog is 100%.

Group of orthologs #327. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.kodakaraensis:50

F7AVN5              	100.00%		Q5JGZ1              	100.00%
                    	       		Q5JH08              	10.91%
Bootstrap support for F7AVN5 as seed ortholog is 100%.
Bootstrap support for Q5JGZ1 as seed ortholog is 100%.

Group of orthologs #328. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.kodakaraensis:50

H2XW88              	100.00%		Q5JIU7              	100.00%
F7AX27              	46.67%		
Bootstrap support for H2XW88 as seed ortholog is 100%.
Bootstrap support for Q5JIU7 as seed ortholog is 100%.

Group of orthologs #329. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.kodakaraensis:50

H2XY27              	100.00%		Q5JG68              	100.00%
Bootstrap support for H2XY27 as seed ortholog is 100%.
Bootstrap support for Q5JG68 as seed ortholog is 100%.

Group of orthologs #330. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.kodakaraensis:49

F6X3P4              	100.00%		Q5JEZ6              	100.00%
F6Z8A3              	65.00%		
H2XZ11              	19.25%		
F6VXC2              	16.25%		
F6Y0Y2              	15.75%		
H2XV20              	13.75%		
H2XU74              	10.50%		
F6V7B2              	10.50%		
F6V7D4              	9.75%		
F6VXQ6              	8.25%		
F6ZMB2              	8.00%		
F6PJL4              	8.00%		
F6QWY8              	8.00%		
H2Y1Z4              	8.00%		
H2XT44              	7.75%		
F6SYE0              	7.75%		
F7APE7              	7.00%		
H2XVX7              	7.00%		
H2Y1P7              	6.75%		
F6R6I1              	6.25%		
F7B9D6              	6.00%		
F7ATZ1              	5.75%		
F6W8V2              	5.75%		
H2XS07              	5.75%		
F6Z9D3              	5.25%		
F7B3K0              	5.25%		
F7A0P0              	5.25%		
F6V890              	5.00%		
Bootstrap support for F6X3P4 as seed ortholog is 100%.
Bootstrap support for Q5JEZ6 as seed ortholog is 100%.

Group of orthologs #331. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.kodakaraensis:49

F6UTV1              	100.00%		Q5JEY6              	100.00%
                    	       		Q5JEN7              	38.25%
                    	       		Q5JIA8              	37.44%
                    	       		Q5JFH7              	36.29%
                    	       		Q5JEW2              	32.60%
Bootstrap support for F6UTV1 as seed ortholog is 100%.
Bootstrap support for Q5JEY6 as seed ortholog is 100%.

Group of orthologs #332. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.kodakaraensis:49

F6QZF6              	100.00%		Q8NKS4              	100.00%
                    	       		Q5JJ90              	12.74%
Bootstrap support for F6QZF6 as seed ortholog is 100%.
Bootstrap support for Q8NKS4 as seed ortholog is 100%.

Group of orthologs #333. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:8 P.kodakaraensis:48

H2XWY6              	100.00%		Q5JFQ4              	100.00%
H2XT31              	40.91%		
F6VYQ8              	20.91%		
F6UYV3              	18.41%		
F6RK63              	15.00%		
F6RNA2              	15.00%		
H2XUU0              	15.00%		
F6YWW0              	14.55%		
F6Q929              	13.18%		
H2XY59              	13.18%		
F6PMW1              	12.73%		
F6U6H9              	12.05%		
F6XXQ7              	11.59%		
F6V0S1              	11.36%		
H2XLP1              	9.32%		
H2XKE6              	7.95%		
Bootstrap support for H2XWY6 as seed ortholog is 55%.
Alternative seed ortholog is F6YCY6 (8 bits away from this cluster)
Bootstrap support for Q5JFQ4 as seed ortholog is 100%.

Group of orthologs #334. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 P.kodakaraensis:48

F6SD13              	100.00%		Q5JJG2              	100.00%
Bootstrap support for F6SD13 as seed ortholog is 100%.
Bootstrap support for Q5JJG2 as seed ortholog is 100%.

Group of orthologs #335. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.kodakaraensis:47

F6SSS2              	100.00%		Q5JDG7              	100.00%
Bootstrap support for F6SSS2 as seed ortholog is 100%.
Bootstrap support for Q5JDG7 as seed ortholog is 100%.

Group of orthologs #336. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.kodakaraensis:47

F6UFA9              	100.00%		Q5JGQ6              	100.00%
Bootstrap support for F6UFA9 as seed ortholog is 100%.
Bootstrap support for Q5JGQ6 as seed ortholog is 100%.

Group of orthologs #337. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.kodakaraensis:47

H2XSK2              	100.00%		Q5JF78              	100.00%
Bootstrap support for H2XSK2 as seed ortholog is 100%.
Bootstrap support for Q5JF78 as seed ortholog is 100%.

Group of orthologs #338. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.kodakaraensis:46

F6XDI5              	100.00%		Q5JDR9              	100.00%
Bootstrap support for F6XDI5 as seed ortholog is 100%.
Bootstrap support for Q5JDR9 as seed ortholog is 100%.

Group of orthologs #339. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.kodakaraensis:46

H2XKM5              	100.00%		Q5JE88              	100.00%
Bootstrap support for H2XKM5 as seed ortholog is 100%.
Bootstrap support for Q5JE88 as seed ortholog is 100%.

Group of orthologs #340. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.kodakaraensis:46

H2Y2E7              	100.00%		Q5JH23              	100.00%
Bootstrap support for H2Y2E7 as seed ortholog is 100%.
Bootstrap support for Q5JH23 as seed ortholog is 100%.

Group of orthologs #341. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.kodakaraensis:45

H2XSA5              	100.00%		Q5JIE0              	100.00%
H2Y0C3              	100.00%		
Bootstrap support for H2XSA5 as seed ortholog is 100%.
Bootstrap support for H2Y0C3 as seed ortholog is 100%.
Bootstrap support for Q5JIE0 as seed ortholog is 100%.

Group of orthologs #342. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:5 P.kodakaraensis:45

H2XZF6              	100.00%		Q5JER1              	100.00%
F6QM01              	5.26%		
Bootstrap support for H2XZF6 as seed ortholog is 56%.
Alternative seed ortholog is H2XXS2 (5 bits away from this cluster)
Bootstrap support for Q5JER1 as seed ortholog is 100%.

Group of orthologs #343. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.kodakaraensis:45

F6SNU1              	100.00%		Q5JI51              	100.00%
Bootstrap support for F6SNU1 as seed ortholog is 100%.
Bootstrap support for Q5JI51 as seed ortholog is 100%.

Group of orthologs #344. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.kodakaraensis:45

F6VMC6              	100.00%		Q5JES5              	100.00%
Bootstrap support for F6VMC6 as seed ortholog is 100%.
Bootstrap support for Q5JES5 as seed ortholog is 100%.

Group of orthologs #345. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.kodakaraensis:45

F7APT3              	100.00%		Q5JGE0              	100.00%
Bootstrap support for F7APT3 as seed ortholog is 100%.
Bootstrap support for Q5JGE0 as seed ortholog is 100%.

Group of orthologs #346. Best score 44 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 P.kodakaraensis:44

F6ZE72              	100.00%		Q5JJA7              	100.00%
Bootstrap support for F6ZE72 as seed ortholog is 100%.
Bootstrap support for Q5JJA7 as seed ortholog is 100%.

Group of orthologs #347. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.kodakaraensis:43

F6VXS0              	100.00%		Q5JIR4              	100.00%
Bootstrap support for F6VXS0 as seed ortholog is 100%.
Bootstrap support for Q5JIR4 as seed ortholog is 100%.

Group of orthologs #348. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.kodakaraensis:43

F6ZVE7              	100.00%		Q5JFL6              	100.00%
Bootstrap support for F6ZVE7 as seed ortholog is 100%.
Bootstrap support for Q5JFL6 as seed ortholog is 100%.

Group of orthologs #349. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.kodakaraensis:43

H2XWE7              	100.00%		Q5JIB4              	100.00%
Bootstrap support for H2XWE7 as seed ortholog is 100%.
Bootstrap support for Q5JIB4 as seed ortholog is 100%.

Group of orthologs #350. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.kodakaraensis:42

H2XXT0              	100.00%		Q5JDF3              	100.00%
F6YXQ0              	31.21%		
Bootstrap support for H2XXT0 as seed ortholog is 100%.
Bootstrap support for Q5JDF3 as seed ortholog is 100%.

Group of orthologs #351. Best score 40 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 P.kodakaraensis:40

H2XS49              	100.00%		Q5JG60              	100.00%
F7B763              	59.45%		
F7B757              	58.21%		
H2XKR4              	49.25%		
H2XVH5              	46.52%		
H2XQ96              	36.32%		
F6RBS2              	29.35%		
H2Y1L1              	28.11%		
H2XNZ2              	25.12%		
F6ZXR3              	15.92%		
Bootstrap support for H2XS49 as seed ortholog is 100%.
Bootstrap support for Q5JG60 as seed ortholog is 100%.

Group of orthologs #352. Best score 40 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 P.kodakaraensis:40

F6YW68              	100.00%		Q5JHG4              	100.00%
Bootstrap support for F6YW68 as seed ortholog is 100%.
Bootstrap support for Q5JHG4 as seed ortholog is 100%.