###################################
1313 groups of orthologs
1524 in-paralogs from C.intestinalis
1394 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 2114 bits
Score difference with first non-orthologous sequence - C.intestinalis:2114 P.jiroveci:989

F6ZLB7              	100.00%		L0PHB1              	100.00%
Bootstrap support for F6ZLB7 as seed ortholog is 100%.
Bootstrap support for L0PHB1 as seed ortholog is 100%.

Group of orthologs #2. Best score 1889 bits
Score difference with first non-orthologous sequence - C.intestinalis:1889 P.jiroveci:1187

F6SUC2              	100.00%		L0PB90              	100.00%
Bootstrap support for F6SUC2 as seed ortholog is 100%.
Bootstrap support for L0PB90 as seed ortholog is 100%.

Group of orthologs #3. Best score 1825 bits
Score difference with first non-orthologous sequence - C.intestinalis:1825 P.jiroveci:1825

F7AMF6              	100.00%		L0PBF5              	100.00%
Bootstrap support for F7AMF6 as seed ortholog is 100%.
Bootstrap support for L0PBF5 as seed ortholog is 100%.

Group of orthologs #4. Best score 1766 bits
Score difference with first non-orthologous sequence - C.intestinalis:1766 P.jiroveci:1766

F6T0F1              	100.00%		L0PGI2              	100.00%
Bootstrap support for F6T0F1 as seed ortholog is 100%.
Bootstrap support for L0PGI2 as seed ortholog is 100%.

Group of orthologs #5. Best score 1576 bits
Score difference with first non-orthologous sequence - C.intestinalis:1576 P.jiroveci:1576

F6WUQ7              	100.00%		L0PGJ4              	100.00%
Bootstrap support for F6WUQ7 as seed ortholog is 100%.
Bootstrap support for L0PGJ4 as seed ortholog is 100%.

Group of orthologs #6. Best score 1236 bits
Score difference with first non-orthologous sequence - C.intestinalis:1236 P.jiroveci:1236

F6SXA4              	100.00%		L0PCG8              	100.00%
Bootstrap support for F6SXA4 as seed ortholog is 100%.
Bootstrap support for L0PCG8 as seed ortholog is 100%.

Group of orthologs #7. Best score 1221 bits
Score difference with first non-orthologous sequence - C.intestinalis:11 P.jiroveci:1221

F6V620              	100.00%		L0PGR1              	100.00%
H2XPC8              	54.20%		
F6PHB9              	49.58%		
F7AU91              	10.14%		
F6ZZ40              	9.42%		
Bootstrap support for F6V620 as seed ortholog is 46%.
Alternative seed ortholog is F6ZKS0 (11 bits away from this cluster)
Bootstrap support for L0PGR1 as seed ortholog is 100%.

Group of orthologs #8. Best score 1199 bits
Score difference with first non-orthologous sequence - C.intestinalis:1199 P.jiroveci:1199

H2XJT1              	100.00%		L0PFU4              	100.00%
Bootstrap support for H2XJT1 as seed ortholog is 100%.
Bootstrap support for L0PFU4 as seed ortholog is 100%.

Group of orthologs #9. Best score 1160 bits
Score difference with first non-orthologous sequence - C.intestinalis:1160 P.jiroveci:1160

F7AKG2              	100.00%		L0P818              	100.00%
Bootstrap support for F7AKG2 as seed ortholog is 100%.
Bootstrap support for L0P818 as seed ortholog is 100%.

Group of orthologs #10. Best score 1136 bits
Score difference with first non-orthologous sequence - C.intestinalis:1136 P.jiroveci:1136

F6WXT4              	100.00%		L0PBE4              	100.00%
Bootstrap support for F6WXT4 as seed ortholog is 100%.
Bootstrap support for L0PBE4 as seed ortholog is 100%.

Group of orthologs #11. Best score 1104 bits
Score difference with first non-orthologous sequence - C.intestinalis:1104 P.jiroveci:1104

F6W1H2              	100.00%		L0PCR2              	100.00%
Bootstrap support for F6W1H2 as seed ortholog is 100%.
Bootstrap support for L0PCR2 as seed ortholog is 100%.

Group of orthologs #12. Best score 1101 bits
Score difference with first non-orthologous sequence - C.intestinalis:1101 P.jiroveci:1101

F6WCR1              	100.00%		L0PDK3              	100.00%
Bootstrap support for F6WCR1 as seed ortholog is 100%.
Bootstrap support for L0PDK3 as seed ortholog is 100%.

Group of orthologs #13. Best score 1092 bits
Score difference with first non-orthologous sequence - C.intestinalis:542 P.jiroveci:1092

F6Z5U4              	100.00%		L0PEW0              	100.00%
Bootstrap support for F6Z5U4 as seed ortholog is 100%.
Bootstrap support for L0PEW0 as seed ortholog is 100%.

Group of orthologs #14. Best score 1059 bits
Score difference with first non-orthologous sequence - C.intestinalis:877 P.jiroveci:1059

H2XQK9              	100.00%		L0P928              	100.00%
Bootstrap support for H2XQK9 as seed ortholog is 100%.
Bootstrap support for L0P928 as seed ortholog is 100%.

Group of orthologs #15. Best score 1056 bits
Score difference with first non-orthologous sequence - C.intestinalis:1056 P.jiroveci:1056

F6RL41              	100.00%		L0PFL5              	100.00%
Bootstrap support for F6RL41 as seed ortholog is 100%.
Bootstrap support for L0PFL5 as seed ortholog is 100%.

Group of orthologs #16. Best score 1046 bits
Score difference with first non-orthologous sequence - C.intestinalis:1046 P.jiroveci:1046

F6U4V1              	100.00%		L0PCK0              	100.00%
                    	       		L0P7U1              	99.07%
Bootstrap support for F6U4V1 as seed ortholog is 100%.
Bootstrap support for L0PCK0 as seed ortholog is 100%.

Group of orthologs #17. Best score 1042 bits
Score difference with first non-orthologous sequence - C.intestinalis:824 P.jiroveci:640

Q4H2Q8              	100.00%		L0PG21              	100.00%
Bootstrap support for Q4H2Q8 as seed ortholog is 100%.
Bootstrap support for L0PG21 as seed ortholog is 100%.

Group of orthologs #18. Best score 1023 bits
Score difference with first non-orthologous sequence - C.intestinalis:560 P.jiroveci:446

F6UYA6              	100.00%		L0PB13              	100.00%
Bootstrap support for F6UYA6 as seed ortholog is 100%.
Bootstrap support for L0PB13 as seed ortholog is 100%.

Group of orthologs #19. Best score 1012 bits
Score difference with first non-orthologous sequence - C.intestinalis:1012 P.jiroveci:1012

F6YYG7              	100.00%		L0P7P6              	100.00%
Bootstrap support for F6YYG7 as seed ortholog is 100%.
Bootstrap support for L0P7P6 as seed ortholog is 100%.

Group of orthologs #20. Best score 998 bits
Score difference with first non-orthologous sequence - C.intestinalis:998 P.jiroveci:998

F6S181              	100.00%		L0P9P7              	100.00%
Bootstrap support for F6S181 as seed ortholog is 100%.
Bootstrap support for L0P9P7 as seed ortholog is 100%.

Group of orthologs #21. Best score 971 bits
Score difference with first non-orthologous sequence - C.intestinalis:297 P.jiroveci:896

F6ZHQ8              	100.00%		L0PG61              	100.00%
Bootstrap support for F6ZHQ8 as seed ortholog is 99%.
Bootstrap support for L0PG61 as seed ortholog is 100%.

Group of orthologs #22. Best score 951 bits
Score difference with first non-orthologous sequence - C.intestinalis:951 P.jiroveci:951

H2XZY7              	100.00%		L0PDI4              	100.00%
H2Y265              	13.01%		
H2XWY7              	12.91%		
F7AY44              	12.60%		
Bootstrap support for H2XZY7 as seed ortholog is 100%.
Bootstrap support for L0PDI4 as seed ortholog is 100%.

Group of orthologs #23. Best score 941 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 P.jiroveci:737

F6W8I3              	100.00%		L0PEK6              	100.00%
Bootstrap support for F6W8I3 as seed ortholog is 99%.
Bootstrap support for L0PEK6 as seed ortholog is 100%.

Group of orthologs #24. Best score 940 bits
Score difference with first non-orthologous sequence - C.intestinalis:561 P.jiroveci:859

H2XZZ5              	100.00%		L0PAG9              	100.00%
Bootstrap support for H2XZZ5 as seed ortholog is 100%.
Bootstrap support for L0PAG9 as seed ortholog is 100%.

Group of orthologs #25. Best score 928 bits
Score difference with first non-orthologous sequence - C.intestinalis:847 P.jiroveci:928

F6YD90              	100.00%		L0P915              	100.00%
Bootstrap support for F6YD90 as seed ortholog is 100%.
Bootstrap support for L0P915 as seed ortholog is 100%.

Group of orthologs #26. Best score 902 bits
Score difference with first non-orthologous sequence - C.intestinalis:902 P.jiroveci:902

F7BKT8              	100.00%		L0P7V0              	100.00%
Bootstrap support for F7BKT8 as seed ortholog is 100%.
Bootstrap support for L0P7V0 as seed ortholog is 100%.

Group of orthologs #27. Best score 878 bits
Score difference with first non-orthologous sequence - C.intestinalis:878 P.jiroveci:878

F6QRG3              	100.00%		L0P7R6              	100.00%
                    	       		L0PHF8              	81.64%
Bootstrap support for F6QRG3 as seed ortholog is 100%.
Bootstrap support for L0P7R6 as seed ortholog is 100%.

Group of orthologs #28. Best score 864 bits
Score difference with first non-orthologous sequence - C.intestinalis:864 P.jiroveci:864

F6UM75              	100.00%		L0PG12              	100.00%
Bootstrap support for F6UM75 as seed ortholog is 100%.
Bootstrap support for L0PG12 as seed ortholog is 100%.

Group of orthologs #29. Best score 861 bits
Score difference with first non-orthologous sequence - C.intestinalis:861 P.jiroveci:861

F6SWL4              	100.00%		L0P9F0              	100.00%
Bootstrap support for F6SWL4 as seed ortholog is 100%.
Bootstrap support for L0P9F0 as seed ortholog is 100%.

Group of orthologs #30. Best score 841 bits
Score difference with first non-orthologous sequence - C.intestinalis:752 P.jiroveci:841

F6XZ43              	100.00%		L0PDF1              	100.00%
Bootstrap support for F6XZ43 as seed ortholog is 100%.
Bootstrap support for L0PDF1 as seed ortholog is 100%.

Group of orthologs #31. Best score 840 bits
Score difference with first non-orthologous sequence - C.intestinalis:503 P.jiroveci:550

F6X211              	100.00%		L0PCW9              	100.00%
H2XSH4              	96.07%		
H2XNA4              	94.76%		
F6X229              	56.91%		
Bootstrap support for F6X211 as seed ortholog is 100%.
Bootstrap support for L0PCW9 as seed ortholog is 100%.

Group of orthologs #32. Best score 839 bits
Score difference with first non-orthologous sequence - C.intestinalis:328 P.jiroveci:691

H2XU53              	100.00%		L0PFS2              	100.00%
Bootstrap support for H2XU53 as seed ortholog is 100%.
Bootstrap support for L0PFS2 as seed ortholog is 100%.

Group of orthologs #33. Best score 837 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 P.jiroveci:639

F6SXM4              	100.00%		L0PFV0              	100.00%
F7BHA0              	11.35%		
Bootstrap support for F6SXM4 as seed ortholog is 99%.
Bootstrap support for L0PFV0 as seed ortholog is 100%.

Group of orthologs #34. Best score 820 bits
Score difference with first non-orthologous sequence - C.intestinalis:702 P.jiroveci:665

F7AKQ3              	100.00%		L0PBQ6              	100.00%
Bootstrap support for F7AKQ3 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 100%.

Group of orthologs #35. Best score 818 bits
Score difference with first non-orthologous sequence - C.intestinalis:818 P.jiroveci:818

H2XJT5              	100.00%		L0PH89              	100.00%
Bootstrap support for H2XJT5 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #36. Best score 810 bits
Score difference with first non-orthologous sequence - C.intestinalis:380 P.jiroveci:810

H2Y1Z9              	100.00%		L0PDQ4              	100.00%
Bootstrap support for H2Y1Z9 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #37. Best score 804 bits
Score difference with first non-orthologous sequence - C.intestinalis:804 P.jiroveci:804

F6XN27              	100.00%		L0PAK7              	100.00%
                    	       		L0P8F2              	67.27%
Bootstrap support for F6XN27 as seed ortholog is 100%.
Bootstrap support for L0PAK7 as seed ortholog is 100%.

Group of orthologs #38. Best score 803 bits
Score difference with first non-orthologous sequence - C.intestinalis:803 P.jiroveci:803

F7BJA3              	100.00%		L0PAN4              	100.00%
Bootstrap support for F7BJA3 as seed ortholog is 100%.
Bootstrap support for L0PAN4 as seed ortholog is 100%.

Group of orthologs #39. Best score 799 bits
Score difference with first non-orthologous sequence - C.intestinalis:799 P.jiroveci:799

F6Y1Q3              	100.00%		L0PFF9              	100.00%
Bootstrap support for F6Y1Q3 as seed ortholog is 100%.
Bootstrap support for L0PFF9 as seed ortholog is 100%.

Group of orthologs #40. Best score 788 bits
Score difference with first non-orthologous sequence - C.intestinalis:788 P.jiroveci:146

F6YKR9              	100.00%		L0P8X7              	100.00%
Bootstrap support for F6YKR9 as seed ortholog is 100%.
Bootstrap support for L0P8X7 as seed ortholog is 99%.

Group of orthologs #41. Best score 786 bits
Score difference with first non-orthologous sequence - C.intestinalis:786 P.jiroveci:786

F6Y8C3              	100.00%		L0PC54              	100.00%
Bootstrap support for F6Y8C3 as seed ortholog is 100%.
Bootstrap support for L0PC54 as seed ortholog is 100%.

Group of orthologs #42. Best score 784 bits
Score difference with first non-orthologous sequence - C.intestinalis:784 P.jiroveci:784

F6TML4              	100.00%		L0P7X5              	100.00%
Bootstrap support for F6TML4 as seed ortholog is 100%.
Bootstrap support for L0P7X5 as seed ortholog is 100%.

Group of orthologs #43. Best score 777 bits
Score difference with first non-orthologous sequence - C.intestinalis:777 P.jiroveci:777

F6ZP18              	100.00%		L0PE96              	100.00%
Bootstrap support for F6ZP18 as seed ortholog is 100%.
Bootstrap support for L0PE96 as seed ortholog is 100%.

Group of orthologs #44. Best score 777 bits
Score difference with first non-orthologous sequence - C.intestinalis:777 P.jiroveci:777

H2XJF1              	100.00%		L0PG53              	100.00%
Bootstrap support for H2XJF1 as seed ortholog is 100%.
Bootstrap support for L0PG53 as seed ortholog is 100%.

Group of orthologs #45. Best score 769 bits
Score difference with first non-orthologous sequence - C.intestinalis:662 P.jiroveci:769

F6WUJ1              	100.00%		L0PC93              	100.00%
Bootstrap support for F6WUJ1 as seed ortholog is 100%.
Bootstrap support for L0PC93 as seed ortholog is 100%.

Group of orthologs #46. Best score 763 bits
Score difference with first non-orthologous sequence - C.intestinalis:225 P.jiroveci:236

F6QVH1              	100.00%		L0PAJ7              	100.00%
Bootstrap support for F6QVH1 as seed ortholog is 100%.
Bootstrap support for L0PAJ7 as seed ortholog is 100%.

Group of orthologs #47. Best score 746 bits
Score difference with first non-orthologous sequence - C.intestinalis:19 P.jiroveci:746

H2XSX9              	100.00%		L0PBA5              	100.00%
H2XZ08              	16.29%		
Bootstrap support for H2XSX9 as seed ortholog is 72%.
Alternative seed ortholog is F6ZID9 (19 bits away from this cluster)
Bootstrap support for L0PBA5 as seed ortholog is 100%.

Group of orthologs #48. Best score 745 bits
Score difference with first non-orthologous sequence - C.intestinalis:394 P.jiroveci:745

L7N0T3              	100.00%		L0PBR4              	100.00%
F6SYL0              	94.64%		
Bootstrap support for L7N0T3 as seed ortholog is 100%.
Bootstrap support for L0PBR4 as seed ortholog is 100%.

Group of orthologs #49. Best score 744 bits
Score difference with first non-orthologous sequence - C.intestinalis:685 P.jiroveci:744

F6UE02              	100.00%		L0P7V1              	100.00%
Bootstrap support for F6UE02 as seed ortholog is 100%.
Bootstrap support for L0P7V1 as seed ortholog is 100%.

Group of orthologs #50. Best score 744 bits
Score difference with first non-orthologous sequence - C.intestinalis:744 P.jiroveci:744

F6YYE4              	100.00%		L0PGL8              	100.00%
Bootstrap support for F6YYE4 as seed ortholog is 100%.
Bootstrap support for L0PGL8 as seed ortholog is 100%.

Group of orthologs #51. Best score 743 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.jiroveci:337

F6Q9K0              	100.00%		L0PDB3              	100.00%
Bootstrap support for F6Q9K0 as seed ortholog is 98%.
Bootstrap support for L0PDB3 as seed ortholog is 100%.

Group of orthologs #52. Best score 740 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 P.jiroveci:740

F6YNJ1              	100.00%		L0PAW9              	100.00%
                    	       		L0PBZ0              	77.74%
Bootstrap support for F6YNJ1 as seed ortholog is 99%.
Bootstrap support for L0PAW9 as seed ortholog is 100%.

Group of orthologs #53. Best score 740 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:655

F6SH00              	100.00%		L0PAC9              	100.00%
Bootstrap support for F6SH00 as seed ortholog is 88%.
Bootstrap support for L0PAC9 as seed ortholog is 100%.

Group of orthologs #54. Best score 739 bits
Score difference with first non-orthologous sequence - C.intestinalis:739 P.jiroveci:739

F6QR00              	100.00%		L0PG77              	100.00%
Bootstrap support for F6QR00 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #55. Best score 735 bits
Score difference with first non-orthologous sequence - C.intestinalis:735 P.jiroveci:735

F6UE33              	100.00%		L0PEU6              	100.00%
Bootstrap support for F6UE33 as seed ortholog is 100%.
Bootstrap support for L0PEU6 as seed ortholog is 100%.

Group of orthologs #56. Best score 735 bits
Score difference with first non-orthologous sequence - C.intestinalis:735 P.jiroveci:735

F7BBW9              	100.00%		L0P7K0              	100.00%
Bootstrap support for F7BBW9 as seed ortholog is 100%.
Bootstrap support for L0P7K0 as seed ortholog is 100%.

Group of orthologs #57. Best score 732 bits
Score difference with first non-orthologous sequence - C.intestinalis:732 P.jiroveci:732

F6UKC4              	100.00%		L0PBP8              	100.00%
Bootstrap support for F6UKC4 as seed ortholog is 100%.
Bootstrap support for L0PBP8 as seed ortholog is 100%.

Group of orthologs #58. Best score 729 bits
Score difference with first non-orthologous sequence - C.intestinalis:729 P.jiroveci:729

F6Z743              	100.00%		L0P9R9              	100.00%
Bootstrap support for F6Z743 as seed ortholog is 100%.
Bootstrap support for L0P9R9 as seed ortholog is 100%.

Group of orthologs #59. Best score 725 bits
Score difference with first non-orthologous sequence - C.intestinalis:725 P.jiroveci:725

F7ADN1              	100.00%		L0PBL6              	100.00%
Bootstrap support for F7ADN1 as seed ortholog is 100%.
Bootstrap support for L0PBL6 as seed ortholog is 100%.

Group of orthologs #60. Best score 719 bits
Score difference with first non-orthologous sequence - C.intestinalis:719 P.jiroveci:283

L7N0S7              	100.00%		L0P833              	100.00%
F6RR11              	14.04%		
Bootstrap support for L7N0S7 as seed ortholog is 100%.
Bootstrap support for L0P833 as seed ortholog is 100%.

Group of orthologs #61. Best score 716 bits
Score difference with first non-orthologous sequence - C.intestinalis:716 P.jiroveci:716

F6VC80              	100.00%		L0PAS8              	100.00%
Bootstrap support for F6VC80 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #62. Best score 713 bits
Score difference with first non-orthologous sequence - C.intestinalis:475 P.jiroveci:713

F6QX34              	100.00%		L0PGA5              	100.00%
Bootstrap support for F6QX34 as seed ortholog is 100%.
Bootstrap support for L0PGA5 as seed ortholog is 100%.

Group of orthologs #63. Best score 713 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 P.jiroveci:713

F6WRK8              	100.00%		L0PGU1              	100.00%
Bootstrap support for F6WRK8 as seed ortholog is 99%.
Bootstrap support for L0PGU1 as seed ortholog is 100%.

Group of orthologs #64. Best score 713 bits
Score difference with first non-orthologous sequence - C.intestinalis:713 P.jiroveci:713

F7APZ8              	100.00%		L0PDF3              	100.00%
Bootstrap support for F7APZ8 as seed ortholog is 100%.
Bootstrap support for L0PDF3 as seed ortholog is 100%.

Group of orthologs #65. Best score 703 bits
Score difference with first non-orthologous sequence - C.intestinalis:703 P.jiroveci:703

F7BPQ7              	100.00%		L0PFJ0              	100.00%
F6XU15              	9.99%		
Bootstrap support for F7BPQ7 as seed ortholog is 100%.
Bootstrap support for L0PFJ0 as seed ortholog is 100%.

Group of orthologs #66. Best score 698 bits
Score difference with first non-orthologous sequence - C.intestinalis:698 P.jiroveci:698

F6PV45              	100.00%		L0PAQ3              	100.00%
Bootstrap support for F6PV45 as seed ortholog is 100%.
Bootstrap support for L0PAQ3 as seed ortholog is 100%.

Group of orthologs #67. Best score 688 bits
Score difference with first non-orthologous sequence - C.intestinalis:688 P.jiroveci:602

F6UXR3              	100.00%		L0P773              	100.00%
Bootstrap support for F6UXR3 as seed ortholog is 100%.
Bootstrap support for L0P773 as seed ortholog is 100%.

Group of orthologs #68. Best score 685 bits
Score difference with first non-orthologous sequence - C.intestinalis:685 P.jiroveci:685

F7BJC2              	100.00%		L0PF68              	100.00%
Bootstrap support for F7BJC2 as seed ortholog is 100%.
Bootstrap support for L0PF68 as seed ortholog is 100%.

Group of orthologs #69. Best score 683 bits
Score difference with first non-orthologous sequence - C.intestinalis:683 P.jiroveci:314

F6RW91              	100.00%		L0PB85              	100.00%
Bootstrap support for F6RW91 as seed ortholog is 100%.
Bootstrap support for L0PB85 as seed ortholog is 100%.

Group of orthologs #70. Best score 683 bits
Score difference with first non-orthologous sequence - C.intestinalis:606 P.jiroveci:683

F6UHM2              	100.00%		L0PBD7              	100.00%
Bootstrap support for F6UHM2 as seed ortholog is 100%.
Bootstrap support for L0PBD7 as seed ortholog is 100%.

Group of orthologs #71. Best score 681 bits
Score difference with first non-orthologous sequence - C.intestinalis:493 P.jiroveci:681

F6W7K5              	100.00%		L0P976              	100.00%
F6W7I3              	79.94%		
Bootstrap support for F6W7K5 as seed ortholog is 100%.
Bootstrap support for L0P976 as seed ortholog is 100%.

Group of orthologs #72. Best score 678 bits
Score difference with first non-orthologous sequence - C.intestinalis:678 P.jiroveci:678

F6V5U6              	100.00%		L0PC65              	100.00%
Bootstrap support for F6V5U6 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #73. Best score 677 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:398

A2SY09              	100.00%		L0PA91              	100.00%
F6SCP4              	71.95%		
F6QBJ1              	50.00%		
L7N0T1              	45.12%		
F6T8C7              	43.90%		
F6SDC9              	43.90%		
Bootstrap support for A2SY09 as seed ortholog is 99%.
Bootstrap support for L0PA91 as seed ortholog is 100%.

Group of orthologs #74. Best score 675 bits
Score difference with first non-orthologous sequence - C.intestinalis:407 P.jiroveci:400

F6Z4G6              	100.00%		L0PBV5              	100.00%
Bootstrap support for F6Z4G6 as seed ortholog is 100%.
Bootstrap support for L0PBV5 as seed ortholog is 100%.

Group of orthologs #75. Best score 672 bits
Score difference with first non-orthologous sequence - C.intestinalis:463 P.jiroveci:672

H2XVY7              	100.00%		L0P945              	100.00%
Bootstrap support for H2XVY7 as seed ortholog is 100%.
Bootstrap support for L0P945 as seed ortholog is 100%.

Group of orthologs #76. Best score 670 bits
Score difference with first non-orthologous sequence - C.intestinalis:420 P.jiroveci:670

F7AJ84              	100.00%		L0PG19              	100.00%
Bootstrap support for F7AJ84 as seed ortholog is 100%.
Bootstrap support for L0PG19 as seed ortholog is 100%.

Group of orthologs #77. Best score 669 bits
Score difference with first non-orthologous sequence - C.intestinalis:669 P.jiroveci:669

H2XLC6              	100.00%		L0PBY5              	100.00%
Bootstrap support for H2XLC6 as seed ortholog is 100%.
Bootstrap support for L0PBY5 as seed ortholog is 100%.

Group of orthologs #78. Best score 668 bits
Score difference with first non-orthologous sequence - C.intestinalis:350 P.jiroveci:668

H2XL55              	100.00%		L0PC37              	100.00%
Bootstrap support for H2XL55 as seed ortholog is 100%.
Bootstrap support for L0PC37 as seed ortholog is 100%.

Group of orthologs #79. Best score 667 bits
Score difference with first non-orthologous sequence - C.intestinalis:667 P.jiroveci:667

F6Z5E6              	100.00%		L0PEK9              	100.00%
Bootstrap support for F6Z5E6 as seed ortholog is 100%.
Bootstrap support for L0PEK9 as seed ortholog is 100%.

Group of orthologs #80. Best score 666 bits
Score difference with first non-orthologous sequence - C.intestinalis:429 P.jiroveci:371

F7BA18              	100.00%		L0PG32              	100.00%
Bootstrap support for F7BA18 as seed ortholog is 100%.
Bootstrap support for L0PG32 as seed ortholog is 100%.

Group of orthologs #81. Best score 663 bits
Score difference with first non-orthologous sequence - C.intestinalis:395 P.jiroveci:549

H2XJF2              	100.00%		L0PBW7              	100.00%
Bootstrap support for H2XJF2 as seed ortholog is 100%.
Bootstrap support for L0PBW7 as seed ortholog is 100%.

Group of orthologs #82. Best score 662 bits
Score difference with first non-orthologous sequence - C.intestinalis:450 P.jiroveci:662

F7B8G8              	100.00%		L0PG45              	100.00%
Bootstrap support for F7B8G8 as seed ortholog is 100%.
Bootstrap support for L0PG45 as seed ortholog is 100%.

Group of orthologs #83. Best score 657 bits
Score difference with first non-orthologous sequence - C.intestinalis:537 P.jiroveci:657

F6TZX4              	100.00%		L0P7L0              	100.00%
                    	       		L0PCI7              	41.75%
Bootstrap support for F6TZX4 as seed ortholog is 100%.
Bootstrap support for L0P7L0 as seed ortholog is 100%.

Group of orthologs #84. Best score 653 bits
Score difference with first non-orthologous sequence - C.intestinalis:653 P.jiroveci:653

F7ABF6              	100.00%		L0P8G2              	100.00%
Bootstrap support for F7ABF6 as seed ortholog is 100%.
Bootstrap support for L0P8G2 as seed ortholog is 100%.

Group of orthologs #85. Best score 644 bits
Score difference with first non-orthologous sequence - C.intestinalis:644 P.jiroveci:644

F6PYU7              	100.00%		L0PEQ8              	100.00%
Bootstrap support for F6PYU7 as seed ortholog is 100%.
Bootstrap support for L0PEQ8 as seed ortholog is 100%.

Group of orthologs #86. Best score 644 bits
Score difference with first non-orthologous sequence - C.intestinalis:644 P.jiroveci:336

F6XJ08              	100.00%		L0PFG7              	100.00%
Bootstrap support for F6XJ08 as seed ortholog is 100%.
Bootstrap support for L0PFG7 as seed ortholog is 100%.

Group of orthologs #87. Best score 644 bits
Score difference with first non-orthologous sequence - C.intestinalis:470 P.jiroveci:560

F7A1V5              	100.00%		L0PCT0              	100.00%
Bootstrap support for F7A1V5 as seed ortholog is 100%.
Bootstrap support for L0PCT0 as seed ortholog is 100%.

Group of orthologs #88. Best score 644 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 P.jiroveci:238

H2Y3E7              	100.00%		L0PE26              	100.00%
Bootstrap support for H2Y3E7 as seed ortholog is 100%.
Bootstrap support for L0PE26 as seed ortholog is 99%.

Group of orthologs #89. Best score 642 bits
Score difference with first non-orthologous sequence - C.intestinalis:477 P.jiroveci:642

F7BEF3              	100.00%		L0PER6              	100.00%
Bootstrap support for F7BEF3 as seed ortholog is 100%.
Bootstrap support for L0PER6 as seed ortholog is 100%.

Group of orthologs #90. Best score 637 bits
Score difference with first non-orthologous sequence - C.intestinalis:637 P.jiroveci:637

F6QDE3              	100.00%		L0PB98              	100.00%
Bootstrap support for F6QDE3 as seed ortholog is 100%.
Bootstrap support for L0PB98 as seed ortholog is 100%.

Group of orthologs #91. Best score 633 bits
Score difference with first non-orthologous sequence - C.intestinalis:633 P.jiroveci:633

F6R356              	100.00%		L0PC79              	100.00%
Bootstrap support for F6R356 as seed ortholog is 100%.
Bootstrap support for L0PC79 as seed ortholog is 100%.

Group of orthologs #92. Best score 633 bits
Score difference with first non-orthologous sequence - C.intestinalis:379 P.jiroveci:332

F7AUJ3              	100.00%		L0PG07              	100.00%
Bootstrap support for F7AUJ3 as seed ortholog is 100%.
Bootstrap support for L0PG07 as seed ortholog is 100%.

Group of orthologs #93. Best score 632 bits
Score difference with first non-orthologous sequence - C.intestinalis:523 P.jiroveci:536

F6X2D1              	100.00%		L0PIF0              	100.00%
Bootstrap support for F6X2D1 as seed ortholog is 100%.
Bootstrap support for L0PIF0 as seed ortholog is 100%.

Group of orthologs #94. Best score 627 bits
Score difference with first non-orthologous sequence - C.intestinalis:343 P.jiroveci:316

H2XRP2              	100.00%		L0P8L4              	100.00%
Bootstrap support for H2XRP2 as seed ortholog is 100%.
Bootstrap support for L0P8L4 as seed ortholog is 99%.

Group of orthologs #95. Best score 624 bits
Score difference with first non-orthologous sequence - C.intestinalis:624 P.jiroveci:624

F6WTE3              	100.00%		L0PDM6              	100.00%
Bootstrap support for F6WTE3 as seed ortholog is 100%.
Bootstrap support for L0PDM6 as seed ortholog is 100%.

Group of orthologs #96. Best score 624 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 P.jiroveci:516

H2XS20              	100.00%		L0P8E7              	100.00%
Bootstrap support for H2XS20 as seed ortholog is 100%.
Bootstrap support for L0P8E7 as seed ortholog is 100%.

Group of orthologs #97. Best score 622 bits
Score difference with first non-orthologous sequence - C.intestinalis:622 P.jiroveci:622

F6ZRN0              	100.00%		L0PBW3              	100.00%
Bootstrap support for F6ZRN0 as seed ortholog is 100%.
Bootstrap support for L0PBW3 as seed ortholog is 100%.

Group of orthologs #98. Best score 621 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 P.jiroveci:621

F6PW28              	100.00%		L0PBN5              	100.00%
Bootstrap support for F6PW28 as seed ortholog is 100%.
Bootstrap support for L0PBN5 as seed ortholog is 100%.

Group of orthologs #99. Best score 617 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.jiroveci:124

F6YUE7              	100.00%		L0P9U6              	100.00%
Bootstrap support for F6YUE7 as seed ortholog is 99%.
Bootstrap support for L0P9U6 as seed ortholog is 99%.

Group of orthologs #100. Best score 616 bits
Score difference with first non-orthologous sequence - C.intestinalis:616 P.jiroveci:616

F6QIX3              	100.00%		L0PDK6              	100.00%
Bootstrap support for F6QIX3 as seed ortholog is 100%.
Bootstrap support for L0PDK6 as seed ortholog is 100%.

Group of orthologs #101. Best score 612 bits
Score difference with first non-orthologous sequence - C.intestinalis:612 P.jiroveci:612

F7A2X8              	100.00%		L0PE57              	100.00%
Bootstrap support for F7A2X8 as seed ortholog is 100%.
Bootstrap support for L0PE57 as seed ortholog is 100%.

Group of orthologs #102. Best score 608 bits
Score difference with first non-orthologous sequence - C.intestinalis:608 P.jiroveci:608

F6SXA9              	100.00%		L0P8L6              	100.00%
Bootstrap support for F6SXA9 as seed ortholog is 100%.
Bootstrap support for L0P8L6 as seed ortholog is 100%.

Group of orthologs #103. Best score 607 bits
Score difference with first non-orthologous sequence - C.intestinalis:607 P.jiroveci:607

F6R2U8              	100.00%		L0PBJ1              	100.00%
Bootstrap support for F6R2U8 as seed ortholog is 100%.
Bootstrap support for L0PBJ1 as seed ortholog is 100%.

Group of orthologs #104. Best score 607 bits
Score difference with first non-orthologous sequence - C.intestinalis:607 P.jiroveci:607

F6XTJ3              	100.00%		L0PCV7              	100.00%
Bootstrap support for F6XTJ3 as seed ortholog is 100%.
Bootstrap support for L0PCV7 as seed ortholog is 100%.

Group of orthologs #105. Best score 607 bits
Score difference with first non-orthologous sequence - C.intestinalis:607 P.jiroveci:607

F6ZBB5              	100.00%		L0P9S1              	100.00%
Bootstrap support for F6ZBB5 as seed ortholog is 100%.
Bootstrap support for L0P9S1 as seed ortholog is 100%.

Group of orthologs #106. Best score 605 bits
Score difference with first non-orthologous sequence - C.intestinalis:559 P.jiroveci:605

F6RMU1              	100.00%		L0PDI6              	100.00%
Bootstrap support for F6RMU1 as seed ortholog is 100%.
Bootstrap support for L0PDI6 as seed ortholog is 100%.

Group of orthologs #107. Best score 604 bits
Score difference with first non-orthologous sequence - C.intestinalis:604 P.jiroveci:604

F6XC92              	100.00%		L0PDG3              	100.00%
Bootstrap support for F6XC92 as seed ortholog is 100%.
Bootstrap support for L0PDG3 as seed ortholog is 100%.

Group of orthologs #108. Best score 600 bits
Score difference with first non-orthologous sequence - C.intestinalis:600 P.jiroveci:600

F6SSP0              	100.00%		L0PGT9              	100.00%
Bootstrap support for F6SSP0 as seed ortholog is 100%.
Bootstrap support for L0PGT9 as seed ortholog is 100%.

Group of orthologs #109. Best score 589 bits
Score difference with first non-orthologous sequence - C.intestinalis:518 P.jiroveci:589

F6VGC6              	100.00%		L0PD32              	100.00%
                    	       		L0PD26              	93.82%
Bootstrap support for F6VGC6 as seed ortholog is 100%.
Bootstrap support for L0PD32 as seed ortholog is 100%.

Group of orthologs #110. Best score 585 bits
Score difference with first non-orthologous sequence - C.intestinalis:437 P.jiroveci:210

F6Y1K6              	100.00%		L0PBH4              	100.00%
F6Q5E4              	60.19%		
Bootstrap support for F6Y1K6 as seed ortholog is 100%.
Bootstrap support for L0PBH4 as seed ortholog is 100%.

Group of orthologs #111. Best score 584 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 P.jiroveci:584

F6XCK4              	100.00%		L0PDJ1              	100.00%
Bootstrap support for F6XCK4 as seed ortholog is 99%.
Bootstrap support for L0PDJ1 as seed ortholog is 100%.

Group of orthologs #112. Best score 582 bits
Score difference with first non-orthologous sequence - C.intestinalis:582 P.jiroveci:582

F6SHG8              	100.00%		L0PB96              	100.00%
Bootstrap support for F6SHG8 as seed ortholog is 100%.
Bootstrap support for L0PB96 as seed ortholog is 100%.

Group of orthologs #113. Best score 581 bits
Score difference with first non-orthologous sequence - C.intestinalis:539 P.jiroveci:581

F6T957              	100.00%		L0PB97              	100.00%
Bootstrap support for F6T957 as seed ortholog is 100%.
Bootstrap support for L0PB97 as seed ortholog is 100%.

Group of orthologs #114. Best score 581 bits
Score difference with first non-orthologous sequence - C.intestinalis:294 P.jiroveci:296

F6THL0              	100.00%		L0PD31              	100.00%
Bootstrap support for F6THL0 as seed ortholog is 100%.
Bootstrap support for L0PD31 as seed ortholog is 100%.

Group of orthologs #115. Best score 580 bits
Score difference with first non-orthologous sequence - C.intestinalis:352 P.jiroveci:580

H2XQX6              	100.00%		L0PAR0              	100.00%
Bootstrap support for H2XQX6 as seed ortholog is 100%.
Bootstrap support for L0PAR0 as seed ortholog is 100%.

Group of orthologs #116. Best score 579 bits
Score difference with first non-orthologous sequence - C.intestinalis:579 P.jiroveci:512

F6Z3I0              	100.00%		L0PA93              	100.00%
Bootstrap support for F6Z3I0 as seed ortholog is 100%.
Bootstrap support for L0PA93 as seed ortholog is 100%.

Group of orthologs #117. Best score 576 bits
Score difference with first non-orthologous sequence - C.intestinalis:372 P.jiroveci:474

F7B898              	100.00%		L0P853              	100.00%
                    	       		L0P8M8              	57.24%
Bootstrap support for F7B898 as seed ortholog is 100%.
Bootstrap support for L0P853 as seed ortholog is 100%.

Group of orthologs #118. Best score 576 bits
Score difference with first non-orthologous sequence - C.intestinalis:338 P.jiroveci:449

F6XF93              	100.00%		L0PC64              	100.00%
Bootstrap support for F6XF93 as seed ortholog is 100%.
Bootstrap support for L0PC64 as seed ortholog is 100%.

Group of orthologs #119. Best score 572 bits
Score difference with first non-orthologous sequence - C.intestinalis:572 P.jiroveci:572

F6U2M6              	100.00%		L0P8W6              	100.00%
Bootstrap support for F6U2M6 as seed ortholog is 100%.
Bootstrap support for L0P8W6 as seed ortholog is 100%.

Group of orthologs #120. Best score 571 bits
Score difference with first non-orthologous sequence - C.intestinalis:571 P.jiroveci:571

F6VRH3              	100.00%		L0PBF3              	100.00%
Bootstrap support for F6VRH3 as seed ortholog is 100%.
Bootstrap support for L0PBF3 as seed ortholog is 100%.

Group of orthologs #121. Best score 571 bits
Score difference with first non-orthologous sequence - C.intestinalis:287 P.jiroveci:242

F6YBA5              	100.00%		L0PEK2              	100.00%
Bootstrap support for F6YBA5 as seed ortholog is 99%.
Bootstrap support for L0PEK2 as seed ortholog is 99%.

Group of orthologs #122. Best score 568 bits
Score difference with first non-orthologous sequence - C.intestinalis:393 P.jiroveci:568

F6VEU9              	100.00%		L0PA75              	100.00%
Bootstrap support for F6VEU9 as seed ortholog is 100%.
Bootstrap support for L0PA75 as seed ortholog is 100%.

Group of orthologs #123. Best score 567 bits
Score difference with first non-orthologous sequence - C.intestinalis:567 P.jiroveci:567

F7BBD1              	100.00%		L0P9W2              	100.00%
Bootstrap support for F7BBD1 as seed ortholog is 100%.
Bootstrap support for L0P9W2 as seed ortholog is 100%.

Group of orthologs #124. Best score 566 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:566

F6XKY1              	100.00%		L0P8C8              	100.00%
Bootstrap support for F6XKY1 as seed ortholog is 100%.
Bootstrap support for L0P8C8 as seed ortholog is 100%.

Group of orthologs #125. Best score 564 bits
Score difference with first non-orthologous sequence - C.intestinalis:312 P.jiroveci:248

H2XXZ3              	100.00%		L0P8Y6              	100.00%
Bootstrap support for H2XXZ3 as seed ortholog is 100%.
Bootstrap support for L0P8Y6 as seed ortholog is 100%.

Group of orthologs #126. Best score 563 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 P.jiroveci:563

F6V7V9              	100.00%		L0PG37              	100.00%
Bootstrap support for F6V7V9 as seed ortholog is 99%.
Bootstrap support for L0PG37 as seed ortholog is 100%.

Group of orthologs #127. Best score 562 bits
Score difference with first non-orthologous sequence - C.intestinalis:562 P.jiroveci:562

F6XH38              	100.00%		L0P917              	100.00%
F6ZGX7              	12.96%		L0PF20              	86.15%
F6ZGZ0              	10.93%		
Bootstrap support for F6XH38 as seed ortholog is 100%.
Bootstrap support for L0P917 as seed ortholog is 100%.

Group of orthologs #128. Best score 559 bits
Score difference with first non-orthologous sequence - C.intestinalis:374 P.jiroveci:559

F6PL95              	100.00%		L0PFN4              	100.00%
Bootstrap support for F6PL95 as seed ortholog is 100%.
Bootstrap support for L0PFN4 as seed ortholog is 100%.

Group of orthologs #129. Best score 559 bits
Score difference with first non-orthologous sequence - C.intestinalis:559 P.jiroveci:559

F6Z761              	100.00%		L0PES7              	100.00%
Bootstrap support for F6Z761 as seed ortholog is 100%.
Bootstrap support for L0PES7 as seed ortholog is 100%.

Group of orthologs #130. Best score 559 bits
Score difference with first non-orthologous sequence - C.intestinalis:559 P.jiroveci:559

H2XQI5              	100.00%		L0PF80              	100.00%
Bootstrap support for H2XQI5 as seed ortholog is 100%.
Bootstrap support for L0PF80 as seed ortholog is 100%.

Group of orthologs #131. Best score 557 bits
Score difference with first non-orthologous sequence - C.intestinalis:557 P.jiroveci:557

F7B6E8              	100.00%		L0PBN0              	100.00%
Bootstrap support for F7B6E8 as seed ortholog is 100%.
Bootstrap support for L0PBN0 as seed ortholog is 100%.

Group of orthologs #132. Best score 554 bits
Score difference with first non-orthologous sequence - C.intestinalis:554 P.jiroveci:554

F6YKX8              	100.00%		L0P9D4              	100.00%
Bootstrap support for F6YKX8 as seed ortholog is 100%.
Bootstrap support for L0P9D4 as seed ortholog is 100%.

Group of orthologs #133. Best score 552 bits
Score difference with first non-orthologous sequence - C.intestinalis:552 P.jiroveci:552

F6YGJ7              	100.00%		L0PAX4              	100.00%
Bootstrap support for F6YGJ7 as seed ortholog is 100%.
Bootstrap support for L0PAX4 as seed ortholog is 100%.

Group of orthologs #134. Best score 550 bits
Score difference with first non-orthologous sequence - C.intestinalis:363 P.jiroveci:345

F6ZFK4              	100.00%		L0P850              	100.00%
H2XJH1              	11.61%		
Bootstrap support for F6ZFK4 as seed ortholog is 100%.
Bootstrap support for L0P850 as seed ortholog is 100%.

Group of orthologs #135. Best score 550 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.jiroveci:26

F6PMK8              	100.00%		L0P9J9              	100.00%
Bootstrap support for F6PMK8 as seed ortholog is 98%.
Bootstrap support for L0P9J9 as seed ortholog is 86%.

Group of orthologs #136. Best score 550 bits
Score difference with first non-orthologous sequence - C.intestinalis:550 P.jiroveci:550

F6Q9P9              	100.00%		L0PA45              	100.00%
Bootstrap support for F6Q9P9 as seed ortholog is 100%.
Bootstrap support for L0PA45 as seed ortholog is 100%.

Group of orthologs #137. Best score 550 bits
Score difference with first non-orthologous sequence - C.intestinalis:550 P.jiroveci:550

F7BL51              	100.00%		L0PFT7              	100.00%
Bootstrap support for F7BL51 as seed ortholog is 100%.
Bootstrap support for L0PFT7 as seed ortholog is 100%.

Group of orthologs #138. Best score 548 bits
Score difference with first non-orthologous sequence - C.intestinalis:548 P.jiroveci:548

H2XU13              	100.00%		L0PDR3              	100.00%
Bootstrap support for H2XU13 as seed ortholog is 100%.
Bootstrap support for L0PDR3 as seed ortholog is 100%.

Group of orthologs #139. Best score 545 bits
Score difference with first non-orthologous sequence - C.intestinalis:421 P.jiroveci:187

F6VAS2              	100.00%		L0P7D9              	100.00%
Bootstrap support for F6VAS2 as seed ortholog is 100%.
Bootstrap support for L0P7D9 as seed ortholog is 100%.

Group of orthologs #140. Best score 545 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.jiroveci:443

F6WI66              	100.00%		L0PDY0              	100.00%
Bootstrap support for F6WI66 as seed ortholog is 99%.
Bootstrap support for L0PDY0 as seed ortholog is 100%.

Group of orthologs #141. Best score 543 bits
Score difference with first non-orthologous sequence - C.intestinalis:401 P.jiroveci:543

F6Q0U4              	100.00%		L0PGS4              	100.00%
Bootstrap support for F6Q0U4 as seed ortholog is 100%.
Bootstrap support for L0PGS4 as seed ortholog is 100%.

Group of orthologs #142. Best score 540 bits
Score difference with first non-orthologous sequence - C.intestinalis:540 P.jiroveci:540

F6WAZ5              	100.00%		L0PDU2              	100.00%
Bootstrap support for F6WAZ5 as seed ortholog is 100%.
Bootstrap support for L0PDU2 as seed ortholog is 100%.

Group of orthologs #143. Best score 538 bits
Score difference with first non-orthologous sequence - C.intestinalis:538 P.jiroveci:538

F6U5F1              	100.00%		L0PAV3              	100.00%
Bootstrap support for F6U5F1 as seed ortholog is 100%.
Bootstrap support for L0PAV3 as seed ortholog is 100%.

Group of orthologs #144. Best score 533 bits
Score difference with first non-orthologous sequence - C.intestinalis:419 P.jiroveci:363

F7B2M5              	100.00%		L0PCD8              	100.00%
Bootstrap support for F7B2M5 as seed ortholog is 100%.
Bootstrap support for L0PCD8 as seed ortholog is 100%.

Group of orthologs #145. Best score 530 bits
Score difference with first non-orthologous sequence - C.intestinalis:530 P.jiroveci:530

F6R8V3              	100.00%		L0PFI9              	100.00%
Bootstrap support for F6R8V3 as seed ortholog is 100%.
Bootstrap support for L0PFI9 as seed ortholog is 100%.

Group of orthologs #146. Best score 530 bits
Score difference with first non-orthologous sequence - C.intestinalis:530 P.jiroveci:480

F7AYB9              	100.00%		L0P7R1              	100.00%
Bootstrap support for F7AYB9 as seed ortholog is 100%.
Bootstrap support for L0P7R1 as seed ortholog is 100%.

Group of orthologs #147. Best score 527 bits
Score difference with first non-orthologous sequence - C.intestinalis:331 P.jiroveci:527

H2XLC2              	100.00%		L0P9I8              	100.00%
Bootstrap support for H2XLC2 as seed ortholog is 100%.
Bootstrap support for L0P9I8 as seed ortholog is 100%.

Group of orthologs #148. Best score 527 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:527

H2XPB4              	100.00%		L0PBW1              	100.00%
Bootstrap support for H2XPB4 as seed ortholog is 96%.
Bootstrap support for L0PBW1 as seed ortholog is 100%.

Group of orthologs #149. Best score 526 bits
Score difference with first non-orthologous sequence - C.intestinalis:226 P.jiroveci:85

H2XSM0              	100.00%		L0PA85              	100.00%
Bootstrap support for H2XSM0 as seed ortholog is 99%.
Bootstrap support for L0PA85 as seed ortholog is 89%.

Group of orthologs #150. Best score 522 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 P.jiroveci:188

F6YDI9              	100.00%		L0PCK5              	100.00%
                    	       		L0PGY9              	100.00%
Bootstrap support for F6YDI9 as seed ortholog is 100%.
Bootstrap support for L0PCK5 as seed ortholog is 100%.
Bootstrap support for L0PGY9 as seed ortholog is 100%.

Group of orthologs #151. Best score 520 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 P.jiroveci:277

F6RKM9              	100.00%		L0P6X8              	100.00%
Bootstrap support for F6RKM9 as seed ortholog is 100%.
Bootstrap support for L0P6X8 as seed ortholog is 100%.

Group of orthologs #152. Best score 519 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:519

H2XYB3              	100.00%		L0P9A8              	100.00%
                    	       		L0PHB9              	100.00%
Bootstrap support for H2XYB3 as seed ortholog is 99%.
Bootstrap support for L0P9A8 as seed ortholog is 100%.
Bootstrap support for L0PHB9 as seed ortholog is 100%.

Group of orthologs #153. Best score 519 bits
Score difference with first non-orthologous sequence - C.intestinalis:519 P.jiroveci:519

H2XKW2              	100.00%		L0PCP1              	100.00%
Bootstrap support for H2XKW2 as seed ortholog is 100%.
Bootstrap support for L0PCP1 as seed ortholog is 100%.

Group of orthologs #154. Best score 518 bits
Score difference with first non-orthologous sequence - C.intestinalis:291 P.jiroveci:403

F6TMJ9              	100.00%		L0P7V6              	100.00%
Bootstrap support for F6TMJ9 as seed ortholog is 100%.
Bootstrap support for L0P7V6 as seed ortholog is 100%.

Group of orthologs #155. Best score 516 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 P.jiroveci:516

F6W785              	100.00%		L0PB12              	100.00%
Bootstrap support for F6W785 as seed ortholog is 100%.
Bootstrap support for L0PB12 as seed ortholog is 100%.

Group of orthologs #156. Best score 516 bits
Score difference with first non-orthologous sequence - C.intestinalis:425 P.jiroveci:414

F6Y4K6              	100.00%		L0PCS2              	100.00%
Bootstrap support for F6Y4K6 as seed ortholog is 100%.
Bootstrap support for L0PCS2 as seed ortholog is 100%.

Group of orthologs #157. Best score 515 bits
Score difference with first non-orthologous sequence - C.intestinalis:261 P.jiroveci:515

F6SG33              	100.00%		L0PET9              	100.00%
Bootstrap support for F6SG33 as seed ortholog is 100%.
Bootstrap support for L0PET9 as seed ortholog is 100%.

Group of orthologs #158. Best score 514 bits
Score difference with first non-orthologous sequence - C.intestinalis:448 P.jiroveci:450

F6W8G0              	100.00%		L0PBU6              	100.00%
Bootstrap support for F6W8G0 as seed ortholog is 100%.
Bootstrap support for L0PBU6 as seed ortholog is 100%.

Group of orthologs #159. Best score 513 bits
Score difference with first non-orthologous sequence - C.intestinalis:513 P.jiroveci:513

F6PNS6              	100.00%		L0PBR9              	100.00%
Bootstrap support for F6PNS6 as seed ortholog is 100%.
Bootstrap support for L0PBR9 as seed ortholog is 100%.

Group of orthologs #160. Best score 513 bits
Score difference with first non-orthologous sequence - C.intestinalis:513 P.jiroveci:513

F6UQ90              	100.00%		L0PEL0              	100.00%
Bootstrap support for F6UQ90 as seed ortholog is 100%.
Bootstrap support for L0PEL0 as seed ortholog is 100%.

Group of orthologs #161. Best score 508 bits
Score difference with first non-orthologous sequence - C.intestinalis:308 P.jiroveci:508

F6R8H4              	100.00%		L0P7B5              	100.00%
Bootstrap support for F6R8H4 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #162. Best score 507 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 P.jiroveci:241

H2XXL7              	100.00%		L0PHY6              	100.00%
Bootstrap support for H2XXL7 as seed ortholog is 99%.
Bootstrap support for L0PHY6 as seed ortholog is 100%.

Group of orthologs #163. Best score 502 bits
Score difference with first non-orthologous sequence - C.intestinalis:415 P.jiroveci:502

F6S6E8              	100.00%		L0PB50              	100.00%
Bootstrap support for F6S6E8 as seed ortholog is 100%.
Bootstrap support for L0PB50 as seed ortholog is 100%.

Group of orthologs #164. Best score 500 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 P.jiroveci:500

F6WR85              	100.00%		L0P7Y5              	100.00%
Bootstrap support for F6WR85 as seed ortholog is 100%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #165. Best score 495 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 P.jiroveci:495

F6PGX9              	100.00%		L0P905              	100.00%
F6V2Z5              	14.93%		
F6T8N6              	11.47%		
F6Q5Y8              	7.70%		
Bootstrap support for F6PGX9 as seed ortholog is 100%.
Bootstrap support for L0P905 as seed ortholog is 100%.

Group of orthologs #166. Best score 494 bits
Score difference with first non-orthologous sequence - C.intestinalis:494 P.jiroveci:494

F6VCT2              	100.00%		L0PCT1              	100.00%
Bootstrap support for F6VCT2 as seed ortholog is 100%.
Bootstrap support for L0PCT1 as seed ortholog is 100%.

Group of orthologs #167. Best score 493 bits
Score difference with first non-orthologous sequence - C.intestinalis:34 P.jiroveci:493

F6SDI7              	100.00%		L0P890              	100.00%
Bootstrap support for F6SDI7 as seed ortholog is 89%.
Bootstrap support for L0P890 as seed ortholog is 100%.

Group of orthologs #168. Best score 491 bits
Score difference with first non-orthologous sequence - C.intestinalis:491 P.jiroveci:491

H2XJF4              	100.00%		L0PCX1              	100.00%
Bootstrap support for H2XJF4 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #169. Best score 488 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 P.jiroveci:488

F6X7X8              	100.00%		L0P7N1              	100.00%
Bootstrap support for F6X7X8 as seed ortholog is 100%.
Bootstrap support for L0P7N1 as seed ortholog is 100%.

Group of orthologs #170. Best score 487 bits
Score difference with first non-orthologous sequence - C.intestinalis:402 P.jiroveci:487

F7A5V7              	100.00%		L0PDG5              	100.00%
Bootstrap support for F7A5V7 as seed ortholog is 100%.
Bootstrap support for L0PDG5 as seed ortholog is 100%.

Group of orthologs #171. Best score 487 bits
Score difference with first non-orthologous sequence - C.intestinalis:364 P.jiroveci:368

Q8T3S5              	100.00%		L0PE30              	100.00%
Bootstrap support for Q8T3S5 as seed ortholog is 100%.
Bootstrap support for L0PE30 as seed ortholog is 100%.

Group of orthologs #172. Best score 486 bits
Score difference with first non-orthologous sequence - C.intestinalis:414 P.jiroveci:486

F6Z8I3              	100.00%		L0P992              	100.00%
Bootstrap support for F6Z8I3 as seed ortholog is 100%.
Bootstrap support for L0P992 as seed ortholog is 100%.

Group of orthologs #173. Best score 485 bits
Score difference with first non-orthologous sequence - C.intestinalis:485 P.jiroveci:485

F6U8C7              	100.00%		L0P9U3              	100.00%
Bootstrap support for F6U8C7 as seed ortholog is 100%.
Bootstrap support for L0P9U3 as seed ortholog is 100%.

Group of orthologs #174. Best score 485 bits
Score difference with first non-orthologous sequence - C.intestinalis:364 P.jiroveci:485

F6U7R9              	100.00%		L0PGH3              	100.00%
Bootstrap support for F6U7R9 as seed ortholog is 100%.
Bootstrap support for L0PGH3 as seed ortholog is 100%.

Group of orthologs #175. Best score 483 bits
Score difference with first non-orthologous sequence - C.intestinalis:338 P.jiroveci:386

F7AMH0              	100.00%		L0P8C2              	100.00%
Bootstrap support for F7AMH0 as seed ortholog is 100%.
Bootstrap support for L0P8C2 as seed ortholog is 100%.

Group of orthologs #176. Best score 482 bits
Score difference with first non-orthologous sequence - C.intestinalis:482 P.jiroveci:482

F6V9G2              	100.00%		L0P7P1              	100.00%
Bootstrap support for F6V9G2 as seed ortholog is 100%.
Bootstrap support for L0P7P1 as seed ortholog is 100%.

Group of orthologs #177. Best score 482 bits
Score difference with first non-orthologous sequence - C.intestinalis:482 P.jiroveci:306

F6VBU5              	100.00%		L0PFN9              	100.00%
Bootstrap support for F6VBU5 as seed ortholog is 100%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #178. Best score 482 bits
Score difference with first non-orthologous sequence - C.intestinalis:482 P.jiroveci:482

F6Z3U3              	100.00%		L0P8M6              	100.00%
Bootstrap support for F6Z3U3 as seed ortholog is 100%.
Bootstrap support for L0P8M6 as seed ortholog is 100%.

Group of orthologs #179. Best score 480 bits
Score difference with first non-orthologous sequence - C.intestinalis:480 P.jiroveci:480

F6UW46              	100.00%		L0P8F1              	100.00%
Bootstrap support for F6UW46 as seed ortholog is 100%.
Bootstrap support for L0P8F1 as seed ortholog is 100%.

Group of orthologs #180. Best score 479 bits
Score difference with first non-orthologous sequence - C.intestinalis:479 P.jiroveci:479

F6TKV3              	100.00%		L0PGR4              	100.00%
                    	       		L0PFQ2              	94.10%
Bootstrap support for F6TKV3 as seed ortholog is 100%.
Bootstrap support for L0PGR4 as seed ortholog is 100%.

Group of orthologs #181. Best score 477 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 P.jiroveci:477

F6U113              	100.00%		L0PBI1              	100.00%
Bootstrap support for F6U113 as seed ortholog is 99%.
Bootstrap support for L0PBI1 as seed ortholog is 100%.

Group of orthologs #182. Best score 476 bits
Score difference with first non-orthologous sequence - C.intestinalis:476 P.jiroveci:476

F6YFY0              	100.00%		L0PB35              	100.00%
Bootstrap support for F6YFY0 as seed ortholog is 100%.
Bootstrap support for L0PB35 as seed ortholog is 100%.

Group of orthologs #183. Best score 473 bits
Score difference with first non-orthologous sequence - C.intestinalis:311 P.jiroveci:473

H2XVK2              	100.00%		L0PAA4              	100.00%
H2XQD5              	55.61%		
Bootstrap support for H2XVK2 as seed ortholog is 100%.
Bootstrap support for L0PAA4 as seed ortholog is 100%.

Group of orthologs #184. Best score 473 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 P.jiroveci:39

F6TV75              	100.00%		L0PAI4              	100.00%
Bootstrap support for F6TV75 as seed ortholog is 100%.
Bootstrap support for L0PAI4 as seed ortholog is 77%.

Group of orthologs #185. Best score 469 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 P.jiroveci:273

F6UCG0              	100.00%		L0PC99              	100.00%
Bootstrap support for F6UCG0 as seed ortholog is 100%.
Bootstrap support for L0PC99 as seed ortholog is 99%.

Group of orthologs #186. Best score 468 bits
Score difference with first non-orthologous sequence - C.intestinalis:326 P.jiroveci:116

F6UJS3              	100.00%		L0P718              	100.00%
Bootstrap support for F6UJS3 as seed ortholog is 100%.
Bootstrap support for L0P718 as seed ortholog is 99%.

Group of orthologs #187. Best score 467 bits
Score difference with first non-orthologous sequence - C.intestinalis:467 P.jiroveci:467

F6ZY44              	100.00%		L0PCY5              	100.00%
Bootstrap support for F6ZY44 as seed ortholog is 100%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #188. Best score 466 bits
Score difference with first non-orthologous sequence - C.intestinalis:466 P.jiroveci:466

F6XIQ9              	100.00%		L0P6T3              	100.00%
Bootstrap support for F6XIQ9 as seed ortholog is 100%.
Bootstrap support for L0P6T3 as seed ortholog is 100%.

Group of orthologs #189. Best score 463 bits
Score difference with first non-orthologous sequence - C.intestinalis:463 P.jiroveci:463

F6YXI8              	100.00%		L0P9C1              	100.00%
Bootstrap support for F6YXI8 as seed ortholog is 100%.
Bootstrap support for L0P9C1 as seed ortholog is 100%.

Group of orthologs #190. Best score 462 bits
Score difference with first non-orthologous sequence - C.intestinalis:331 P.jiroveci:462

F6XMA0              	100.00%		L0P8N1              	100.00%
Bootstrap support for F6XMA0 as seed ortholog is 100%.
Bootstrap support for L0P8N1 as seed ortholog is 100%.

Group of orthologs #191. Best score 461 bits
Score difference with first non-orthologous sequence - C.intestinalis:461 P.jiroveci:461

F6XQ09              	100.00%		L0PC09              	100.00%
Bootstrap support for F6XQ09 as seed ortholog is 100%.
Bootstrap support for L0PC09 as seed ortholog is 100%.

Group of orthologs #192. Best score 459 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 P.jiroveci:459

F6VVR6              	100.00%		L0PCS3              	100.00%
Bootstrap support for F6VVR6 as seed ortholog is 100%.
Bootstrap support for L0PCS3 as seed ortholog is 100%.

Group of orthologs #193. Best score 459 bits
Score difference with first non-orthologous sequence - C.intestinalis:331 P.jiroveci:97

F7B991              	100.00%		L0PFW2              	100.00%
Bootstrap support for F7B991 as seed ortholog is 100%.
Bootstrap support for L0PFW2 as seed ortholog is 99%.

Group of orthologs #194. Best score 458 bits
Score difference with first non-orthologous sequence - C.intestinalis:307 P.jiroveci:376

F7B7G6              	100.00%		L0PC98              	100.00%
Bootstrap support for F7B7G6 as seed ortholog is 100%.
Bootstrap support for L0PC98 as seed ortholog is 100%.

Group of orthologs #195. Best score 457 bits
Score difference with first non-orthologous sequence - C.intestinalis:457 P.jiroveci:457

F6RCY1              	100.00%		L0P7T0              	100.00%
Bootstrap support for F6RCY1 as seed ortholog is 100%.
Bootstrap support for L0P7T0 as seed ortholog is 100%.

Group of orthologs #196. Best score 456 bits
Score difference with first non-orthologous sequence - C.intestinalis:456 P.jiroveci:456

F6USH9              	100.00%		L0P7N3              	100.00%
Bootstrap support for F6USH9 as seed ortholog is 100%.
Bootstrap support for L0P7N3 as seed ortholog is 100%.

Group of orthologs #197. Best score 456 bits
Score difference with first non-orthologous sequence - C.intestinalis:456 P.jiroveci:456

F6TPR3              	100.00%		L0PDC9              	100.00%
Bootstrap support for F6TPR3 as seed ortholog is 100%.
Bootstrap support for L0PDC9 as seed ortholog is 100%.

Group of orthologs #198. Best score 456 bits
Score difference with first non-orthologous sequence - C.intestinalis:456 P.jiroveci:456

F6Y1N2              	100.00%		L0PDM3              	100.00%
Bootstrap support for F6Y1N2 as seed ortholog is 100%.
Bootstrap support for L0PDM3 as seed ortholog is 100%.

Group of orthologs #199. Best score 455 bits
Score difference with first non-orthologous sequence - C.intestinalis:455 P.jiroveci:455

F6YQ60              	100.00%		L0PEZ0              	100.00%
Bootstrap support for F6YQ60 as seed ortholog is 100%.
Bootstrap support for L0PEZ0 as seed ortholog is 100%.

Group of orthologs #200. Best score 453 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:225

F6Q0M2              	100.00%		L0PB67              	100.00%
Bootstrap support for F6Q0M2 as seed ortholog is 99%.
Bootstrap support for L0PB67 as seed ortholog is 100%.

Group of orthologs #201. Best score 453 bits
Score difference with first non-orthologous sequence - C.intestinalis:453 P.jiroveci:453

F6XCG6              	100.00%		L0PCA7              	100.00%
Bootstrap support for F6XCG6 as seed ortholog is 100%.
Bootstrap support for L0PCA7 as seed ortholog is 100%.

Group of orthologs #202. Best score 452 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 P.jiroveci:377

F6YIL9              	100.00%		L0PG55              	100.00%
Bootstrap support for F6YIL9 as seed ortholog is 100%.
Bootstrap support for L0PG55 as seed ortholog is 100%.

Group of orthologs #203. Best score 448 bits
Score difference with first non-orthologous sequence - C.intestinalis:448 P.jiroveci:229

F6S399              	100.00%		L0PED9              	100.00%
Bootstrap support for F6S399 as seed ortholog is 100%.
Bootstrap support for L0PED9 as seed ortholog is 99%.

Group of orthologs #204. Best score 448 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 P.jiroveci:313

F6SZ54              	100.00%		L0PDA0              	100.00%
Bootstrap support for F6SZ54 as seed ortholog is 100%.
Bootstrap support for L0PDA0 as seed ortholog is 100%.

Group of orthologs #205. Best score 447 bits
Score difference with first non-orthologous sequence - C.intestinalis:447 P.jiroveci:447

F6SPZ6              	100.00%		L0PBM4              	100.00%
Bootstrap support for F6SPZ6 as seed ortholog is 100%.
Bootstrap support for L0PBM4 as seed ortholog is 100%.

Group of orthologs #206. Best score 446 bits
Score difference with first non-orthologous sequence - C.intestinalis:446 P.jiroveci:446

F6UF05              	100.00%		L0PER3              	100.00%
Bootstrap support for F6UF05 as seed ortholog is 100%.
Bootstrap support for L0PER3 as seed ortholog is 100%.

Group of orthologs #207. Best score 444 bits
Score difference with first non-orthologous sequence - C.intestinalis:341 P.jiroveci:444

H2XZT6              	100.00%		L0P921              	100.00%
Bootstrap support for H2XZT6 as seed ortholog is 100%.
Bootstrap support for L0P921 as seed ortholog is 100%.

Group of orthologs #208. Best score 441 bits
Score difference with first non-orthologous sequence - C.intestinalis:441 P.jiroveci:306

F6TZU9              	100.00%		L0PE41              	100.00%
Bootstrap support for F6TZU9 as seed ortholog is 100%.
Bootstrap support for L0PE41 as seed ortholog is 100%.

Group of orthologs #209. Best score 440 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 P.jiroveci:200

F6W1I6              	100.00%		L0PFW1              	100.00%
Bootstrap support for F6W1I6 as seed ortholog is 100%.
Bootstrap support for L0PFW1 as seed ortholog is 99%.

Group of orthologs #210. Best score 440 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 P.jiroveci:440

F6YGC1              	100.00%		L0PEM1              	100.00%
Bootstrap support for F6YGC1 as seed ortholog is 100%.
Bootstrap support for L0PEM1 as seed ortholog is 100%.

Group of orthologs #211. Best score 439 bits
Score difference with first non-orthologous sequence - C.intestinalis:439 P.jiroveci:439

H2XL64              	100.00%		L0PAC4              	100.00%
                    	       		L0P871              	98.23%
Bootstrap support for H2XL64 as seed ortholog is 100%.
Bootstrap support for L0PAC4 as seed ortholog is 100%.

Group of orthologs #212. Best score 439 bits
Score difference with first non-orthologous sequence - C.intestinalis:291 P.jiroveci:100

H2XK85              	100.00%		L0PFS3              	100.00%
H2XLI5              	64.36%		
Bootstrap support for H2XK85 as seed ortholog is 100%.
Bootstrap support for L0PFS3 as seed ortholog is 99%.

Group of orthologs #213. Best score 437 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 P.jiroveci:437

F6RIY5              	100.00%		L0P6W8              	100.00%
                    	       		L0PH46              	100.00%
Bootstrap support for F6RIY5 as seed ortholog is 100%.
Bootstrap support for L0P6W8 as seed ortholog is 100%.
Bootstrap support for L0PH46 as seed ortholog is 100%.

Group of orthologs #214. Best score 436 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 P.jiroveci:309

F6RCR9              	100.00%		L0PFB1              	100.00%
Bootstrap support for F6RCR9 as seed ortholog is 100%.
Bootstrap support for L0PFB1 as seed ortholog is 100%.

Group of orthologs #215. Best score 435 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:435

F6SBC7              	100.00%		L0PBP3              	100.00%
Bootstrap support for F6SBC7 as seed ortholog is 100%.
Bootstrap support for L0PBP3 as seed ortholog is 100%.

Group of orthologs #216. Best score 434 bits
Score difference with first non-orthologous sequence - C.intestinalis:434 P.jiroveci:434

F6RHH3              	100.00%		L0PAS3              	100.00%
Bootstrap support for F6RHH3 as seed ortholog is 100%.
Bootstrap support for L0PAS3 as seed ortholog is 100%.

Group of orthologs #217. Best score 429 bits
Score difference with first non-orthologous sequence - C.intestinalis:429 P.jiroveci:429

F6QIK7              	100.00%		L0PBG8              	100.00%
Bootstrap support for F6QIK7 as seed ortholog is 100%.
Bootstrap support for L0PBG8 as seed ortholog is 100%.

Group of orthologs #218. Best score 428 bits
Score difference with first non-orthologous sequence - C.intestinalis:428 P.jiroveci:428

F6ZVE7              	100.00%		L0PC82              	100.00%
Bootstrap support for F6ZVE7 as seed ortholog is 100%.
Bootstrap support for L0PC82 as seed ortholog is 100%.

Group of orthologs #219. Best score 427 bits
Score difference with first non-orthologous sequence - C.intestinalis:427 P.jiroveci:427

F6ZP25              	100.00%		L0P9C9              	100.00%
Bootstrap support for F6ZP25 as seed ortholog is 100%.
Bootstrap support for L0P9C9 as seed ortholog is 100%.

Group of orthologs #220. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:211

F6TVZ8              	100.00%		L0PGV4              	100.00%
Bootstrap support for F6TVZ8 as seed ortholog is 99%.
Bootstrap support for L0PGV4 as seed ortholog is 100%.

Group of orthologs #221. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.jiroveci:426

H2Y323              	100.00%		L0PFJ5              	100.00%
Bootstrap support for H2Y323 as seed ortholog is 99%.
Bootstrap support for L0PFJ5 as seed ortholog is 100%.

Group of orthologs #222. Best score 425 bits
Score difference with first non-orthologous sequence - C.intestinalis:425 P.jiroveci:425

F6XRI7              	100.00%		L0PBE9              	100.00%
Bootstrap support for F6XRI7 as seed ortholog is 100%.
Bootstrap support for L0PBE9 as seed ortholog is 100%.

Group of orthologs #223. Best score 425 bits
Score difference with first non-orthologous sequence - C.intestinalis:425 P.jiroveci:425

F6WA81              	100.00%		L0PFZ9              	100.00%
Bootstrap support for F6WA81 as seed ortholog is 100%.
Bootstrap support for L0PFZ9 as seed ortholog is 100%.

Group of orthologs #224. Best score 420 bits
Score difference with first non-orthologous sequence - C.intestinalis:420 P.jiroveci:420

F6SIN5              	100.00%		L0PAP2              	100.00%
Bootstrap support for F6SIN5 as seed ortholog is 100%.
Bootstrap support for L0PAP2 as seed ortholog is 100%.

Group of orthologs #225. Best score 419 bits
Score difference with first non-orthologous sequence - C.intestinalis:419 P.jiroveci:419

F7A8S2              	100.00%		L0PBT8              	100.00%
Bootstrap support for F7A8S2 as seed ortholog is 100%.
Bootstrap support for L0PBT8 as seed ortholog is 100%.

Group of orthologs #226. Best score 418 bits
Score difference with first non-orthologous sequence - C.intestinalis:418 P.jiroveci:418

F6TSV2              	100.00%		L0P958              	100.00%
Bootstrap support for F6TSV2 as seed ortholog is 100%.
Bootstrap support for L0P958 as seed ortholog is 100%.

Group of orthologs #227. Best score 418 bits
Score difference with first non-orthologous sequence - C.intestinalis:277 P.jiroveci:418

H2XLP3              	100.00%		L0PCN1              	100.00%
Bootstrap support for H2XLP3 as seed ortholog is 100%.
Bootstrap support for L0PCN1 as seed ortholog is 100%.

Group of orthologs #228. Best score 416 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 P.jiroveci:416

F6XQ16              	100.00%		L0P9H5              	100.00%
                    	       		L0P8S4              	54.55%
Bootstrap support for F6XQ16 as seed ortholog is 61%.
Alternative seed ortholog is F6QIR4 (1 bits away from this cluster)
Bootstrap support for L0P9H5 as seed ortholog is 100%.

Group of orthologs #229. Best score 416 bits
Score difference with first non-orthologous sequence - C.intestinalis:416 P.jiroveci:416

F6XHQ2              	100.00%		L0P9V7              	100.00%
Bootstrap support for F6XHQ2 as seed ortholog is 100%.
Bootstrap support for L0P9V7 as seed ortholog is 100%.

Group of orthologs #230. Best score 415 bits
Score difference with first non-orthologous sequence - C.intestinalis:244 P.jiroveci:415

F6TX56              	100.00%		L0P9G2              	100.00%
Bootstrap support for F6TX56 as seed ortholog is 100%.
Bootstrap support for L0P9G2 as seed ortholog is 100%.

Group of orthologs #231. Best score 415 bits
Score difference with first non-orthologous sequence - C.intestinalis:360 P.jiroveci:415

F6X4W9              	100.00%		L0P9C8              	100.00%
Bootstrap support for F6X4W9 as seed ortholog is 100%.
Bootstrap support for L0P9C8 as seed ortholog is 100%.

Group of orthologs #232. Best score 414 bits
Score difference with first non-orthologous sequence - C.intestinalis:414 P.jiroveci:414

F6RHA1              	100.00%		L0PGU0              	100.00%
Bootstrap support for F6RHA1 as seed ortholog is 100%.
Bootstrap support for L0PGU0 as seed ortholog is 100%.

Group of orthologs #233. Best score 414 bits
Score difference with first non-orthologous sequence - C.intestinalis:314 P.jiroveci:414

F7A606              	100.00%		L0PAL8              	100.00%
Bootstrap support for F7A606 as seed ortholog is 100%.
Bootstrap support for L0PAL8 as seed ortholog is 100%.

Group of orthologs #234. Best score 414 bits
Score difference with first non-orthologous sequence - C.intestinalis:414 P.jiroveci:414

F7AX62              	100.00%		L0PG48              	100.00%
Bootstrap support for F7AX62 as seed ortholog is 100%.
Bootstrap support for L0PG48 as seed ortholog is 100%.

Group of orthologs #235. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:411 P.jiroveci:411

F6TD07              	100.00%		L0P9J7              	100.00%
Bootstrap support for F6TD07 as seed ortholog is 100%.
Bootstrap support for L0P9J7 as seed ortholog is 100%.

Group of orthologs #236. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:411 P.jiroveci:411

F6VYC6              	100.00%		L0PAH2              	100.00%
Bootstrap support for F6VYC6 as seed ortholog is 100%.
Bootstrap support for L0PAH2 as seed ortholog is 100%.

Group of orthologs #237. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.jiroveci:411

F6UGA6              	100.00%		L0PGN1              	100.00%
Bootstrap support for F6UGA6 as seed ortholog is 99%.
Bootstrap support for L0PGN1 as seed ortholog is 100%.

Group of orthologs #238. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:411 P.jiroveci:411

F6ZDC7              	100.00%		L0PEE4              	100.00%
Bootstrap support for F6ZDC7 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.

Group of orthologs #239. Best score 408 bits
Score difference with first non-orthologous sequence - C.intestinalis:408 P.jiroveci:408

F6ZZJ8              	100.00%		L0PFC2              	100.00%
Bootstrap support for F6ZZJ8 as seed ortholog is 100%.
Bootstrap support for L0PFC2 as seed ortholog is 100%.

Group of orthologs #240. Best score 408 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 P.jiroveci:408

F7BBJ9              	100.00%		L0PDT0              	100.00%
Bootstrap support for F7BBJ9 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #241. Best score 407 bits
Score difference with first non-orthologous sequence - C.intestinalis:407 P.jiroveci:407

F6WYI9              	100.00%		L0P7S7              	100.00%
Bootstrap support for F6WYI9 as seed ortholog is 100%.
Bootstrap support for L0P7S7 as seed ortholog is 100%.

Group of orthologs #242. Best score 407 bits
Score difference with first non-orthologous sequence - C.intestinalis:407 P.jiroveci:407

F6Z3V6              	100.00%		L0P9B4              	100.00%
Bootstrap support for F6Z3V6 as seed ortholog is 100%.
Bootstrap support for L0P9B4 as seed ortholog is 100%.

Group of orthologs #243. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:406 P.jiroveci:406

F7A8C2              	100.00%		L0P7M4              	100.00%
                    	       		L0PH62              	50.81%
Bootstrap support for F7A8C2 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #244. Best score 405 bits
Score difference with first non-orthologous sequence - C.intestinalis:405 P.jiroveci:405

F6UF57              	100.00%		L0PG96              	100.00%
Bootstrap support for F6UF57 as seed ortholog is 100%.
Bootstrap support for L0PG96 as seed ortholog is 100%.

Group of orthologs #245. Best score 405 bits
Score difference with first non-orthologous sequence - C.intestinalis:405 P.jiroveci:352

F7B040              	100.00%		L0PFE7              	100.00%
Bootstrap support for F7B040 as seed ortholog is 100%.
Bootstrap support for L0PFE7 as seed ortholog is 100%.

Group of orthologs #246. Best score 404 bits
Score difference with first non-orthologous sequence - C.intestinalis:404 P.jiroveci:65

F6R5L0              	100.00%		L0P6V9              	100.00%
Bootstrap support for F6R5L0 as seed ortholog is 100%.
Bootstrap support for L0P6V9 as seed ortholog is 99%.

Group of orthologs #247. Best score 404 bits
Score difference with first non-orthologous sequence - C.intestinalis:404 P.jiroveci:404

F6USX3              	100.00%		L0PEA0              	100.00%
Bootstrap support for F6USX3 as seed ortholog is 100%.
Bootstrap support for L0PEA0 as seed ortholog is 100%.

Group of orthologs #248. Best score 403 bits
Score difference with first non-orthologous sequence - C.intestinalis:403 P.jiroveci:403

F6UI47              	100.00%		L0PEE3              	100.00%
Bootstrap support for F6UI47 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #249. Best score 403 bits
Score difference with first non-orthologous sequence - C.intestinalis:403 P.jiroveci:403

F7ANR5              	100.00%		L0P8X3              	100.00%
Bootstrap support for F7ANR5 as seed ortholog is 100%.
Bootstrap support for L0P8X3 as seed ortholog is 100%.

Group of orthologs #250. Best score 403 bits
Score difference with first non-orthologous sequence - C.intestinalis:403 P.jiroveci:403

H2XPG3              	100.00%		L0PDM0              	100.00%
Bootstrap support for H2XPG3 as seed ortholog is 100%.
Bootstrap support for L0PDM0 as seed ortholog is 100%.

Group of orthologs #251. Best score 402 bits
Score difference with first non-orthologous sequence - C.intestinalis:402 P.jiroveci:402

F6SZ37              	100.00%		L0PAE9              	100.00%
Bootstrap support for F6SZ37 as seed ortholog is 100%.
Bootstrap support for L0PAE9 as seed ortholog is 100%.

Group of orthologs #252. Best score 402 bits
Score difference with first non-orthologous sequence - C.intestinalis:402 P.jiroveci:402

H2Y1C4              	100.00%		L0P969              	100.00%
Bootstrap support for H2Y1C4 as seed ortholog is 100%.
Bootstrap support for L0P969 as seed ortholog is 100%.

Group of orthologs #253. Best score 401 bits
Score difference with first non-orthologous sequence - C.intestinalis:401 P.jiroveci:401

F6WRF3              	100.00%		L0P8Z3              	100.00%
Bootstrap support for F6WRF3 as seed ortholog is 100%.
Bootstrap support for L0P8Z3 as seed ortholog is 100%.

Group of orthologs #254. Best score 400 bits
Score difference with first non-orthologous sequence - C.intestinalis:400 P.jiroveci:400

H2XKA9              	100.00%		L0PCQ7              	100.00%
Bootstrap support for H2XKA9 as seed ortholog is 100%.
Bootstrap support for L0PCQ7 as seed ortholog is 100%.

Group of orthologs #255. Best score 399 bits
Score difference with first non-orthologous sequence - C.intestinalis:399 P.jiroveci:399

F6XK10              	100.00%		L0PBN1              	100.00%
Bootstrap support for F6XK10 as seed ortholog is 100%.
Bootstrap support for L0PBN1 as seed ortholog is 100%.

Group of orthologs #256. Best score 399 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.jiroveci:399

H2XYE1              	100.00%		L0PBF6              	100.00%
Bootstrap support for H2XYE1 as seed ortholog is 100%.
Bootstrap support for L0PBF6 as seed ortholog is 100%.

Group of orthologs #257. Best score 398 bits
Score difference with first non-orthologous sequence - C.intestinalis:398 P.jiroveci:398

F6UTV1              	100.00%		L0PGA8              	100.00%
Bootstrap support for F6UTV1 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #258. Best score 398 bits
Score difference with first non-orthologous sequence - C.intestinalis:398 P.jiroveci:398

H2XZM3              	100.00%		L0P7L7              	100.00%
Bootstrap support for H2XZM3 as seed ortholog is 100%.
Bootstrap support for L0P7L7 as seed ortholog is 100%.

Group of orthologs #259. Best score 395 bits
Score difference with first non-orthologous sequence - C.intestinalis:395 P.jiroveci:395

F6XK22              	100.00%		L0PHJ7              	100.00%
Bootstrap support for F6XK22 as seed ortholog is 100%.
Bootstrap support for L0PHJ7 as seed ortholog is 100%.

Group of orthologs #260. Best score 395 bits
Score difference with first non-orthologous sequence - C.intestinalis:395 P.jiroveci:395

Q1RLG4              	100.00%		L0P9U8              	100.00%
Bootstrap support for Q1RLG4 as seed ortholog is 100%.
Bootstrap support for L0P9U8 as seed ortholog is 100%.

Group of orthologs #261. Best score 393 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 P.jiroveci:393

F6UIE4              	100.00%		L0PA15              	100.00%
Bootstrap support for F6UIE4 as seed ortholog is 100%.
Bootstrap support for L0PA15 as seed ortholog is 100%.

Group of orthologs #262. Best score 390 bits
Score difference with first non-orthologous sequence - C.intestinalis:390 P.jiroveci:390

F6SWH7              	100.00%		L0PBV8              	100.00%
Bootstrap support for F6SWH7 as seed ortholog is 100%.
Bootstrap support for L0PBV8 as seed ortholog is 100%.

Group of orthologs #263. Best score 389 bits
Score difference with first non-orthologous sequence - C.intestinalis:314 P.jiroveci:282

L7N0S3              	100.00%		L0PA41              	100.00%
Bootstrap support for L7N0S3 as seed ortholog is 100%.
Bootstrap support for L0PA41 as seed ortholog is 100%.

Group of orthologs #264. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:251 P.jiroveci:294

F6WWK0              	100.00%		L0PA57              	100.00%
Bootstrap support for F6WWK0 as seed ortholog is 100%.
Bootstrap support for L0PA57 as seed ortholog is 100%.

Group of orthologs #265. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:388 P.jiroveci:388

F6YY15              	100.00%		L0PFM4              	100.00%
Bootstrap support for F6YY15 as seed ortholog is 100%.
Bootstrap support for L0PFM4 as seed ortholog is 100%.

Group of orthologs #266. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:388 P.jiroveci:388

F7AQA9              	100.00%		L0PBA9              	100.00%
Bootstrap support for F7AQA9 as seed ortholog is 100%.
Bootstrap support for L0PBA9 as seed ortholog is 100%.

Group of orthologs #267. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:388 P.jiroveci:388

H2XJK0              	100.00%		L0PE98              	100.00%
Bootstrap support for H2XJK0 as seed ortholog is 100%.
Bootstrap support for L0PE98 as seed ortholog is 100%.

Group of orthologs #268. Best score 386 bits
Score difference with first non-orthologous sequence - C.intestinalis:386 P.jiroveci:386

F6UQL0              	100.00%		L0PAH9              	100.00%
                    	       		L0PAZ7              	30.93%
Bootstrap support for F6UQL0 as seed ortholog is 100%.
Bootstrap support for L0PAH9 as seed ortholog is 100%.

Group of orthologs #269. Best score 386 bits
Score difference with first non-orthologous sequence - C.intestinalis:386 P.jiroveci:386

F6XIP9              	100.00%		L0PCV8              	100.00%
Bootstrap support for F6XIP9 as seed ortholog is 100%.
Bootstrap support for L0PCV8 as seed ortholog is 100%.

Group of orthologs #270. Best score 385 bits
Score difference with first non-orthologous sequence - C.intestinalis:385 P.jiroveci:385

F6PWP3              	100.00%		L0PDS0              	100.00%
Bootstrap support for F6PWP3 as seed ortholog is 100%.
Bootstrap support for L0PDS0 as seed ortholog is 100%.

Group of orthologs #271. Best score 385 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 P.jiroveci:16

F6ZCE0              	100.00%		L0PAN3              	100.00%
Bootstrap support for F6ZCE0 as seed ortholog is 99%.
Bootstrap support for L0PAN3 as seed ortholog is 71%.
Alternative seed ortholog is L0PE81 (16 bits away from this cluster)

Group of orthologs #272. Best score 384 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 P.jiroveci:384

F6TBI8              	100.00%		L0PE19              	100.00%
Bootstrap support for F6TBI8 as seed ortholog is 100%.
Bootstrap support for L0PE19 as seed ortholog is 100%.

Group of orthologs #273. Best score 384 bits
Score difference with first non-orthologous sequence - C.intestinalis:384 P.jiroveci:384

F6X4B8              	100.00%		L0PF52              	100.00%
Bootstrap support for F6X4B8 as seed ortholog is 100%.
Bootstrap support for L0PF52 as seed ortholog is 100%.

Group of orthologs #274. Best score 384 bits
Score difference with first non-orthologous sequence - C.intestinalis:384 P.jiroveci:384

F6ZZH3              	100.00%		L0PB18              	100.00%
Bootstrap support for F6ZZH3 as seed ortholog is 100%.
Bootstrap support for L0PB18 as seed ortholog is 100%.

Group of orthologs #275. Best score 382 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 P.jiroveci:221

Q4H3L5              	100.00%		L0P9Z0              	100.00%
Bootstrap support for Q4H3L5 as seed ortholog is 99%.
Bootstrap support for L0P9Z0 as seed ortholog is 100%.

Group of orthologs #276. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 P.jiroveci:381

F6Q9C5              	100.00%		L0PGC4              	100.00%
Bootstrap support for F6Q9C5 as seed ortholog is 100%.
Bootstrap support for L0PGC4 as seed ortholog is 100%.

Group of orthologs #277. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 P.jiroveci:381

F6SSW4              	100.00%		L0PEX5              	100.00%
Bootstrap support for F6SSW4 as seed ortholog is 100%.
Bootstrap support for L0PEX5 as seed ortholog is 100%.

Group of orthologs #278. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 P.jiroveci:381

F6VFC5              	100.00%		L0PAI0              	100.00%
Bootstrap support for F6VFC5 as seed ortholog is 100%.
Bootstrap support for L0PAI0 as seed ortholog is 100%.

Group of orthologs #279. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 P.jiroveci:381

F6X3Q7              	100.00%		L0PI36              	100.00%
Bootstrap support for F6X3Q7 as seed ortholog is 100%.
Bootstrap support for L0PI36 as seed ortholog is 100%.

Group of orthologs #280. Best score 380 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 P.jiroveci:119

F6PKL5              	100.00%		L0PGJ9              	100.00%
Bootstrap support for F6PKL5 as seed ortholog is 100%.
Bootstrap support for L0PGJ9 as seed ortholog is 99%.

Group of orthologs #281. Best score 379 bits
Score difference with first non-orthologous sequence - C.intestinalis:379 P.jiroveci:379

F7B7E9              	100.00%		L0PA88              	100.00%
Bootstrap support for F7B7E9 as seed ortholog is 100%.
Bootstrap support for L0PA88 as seed ortholog is 100%.

Group of orthologs #282. Best score 379 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 P.jiroveci:379

F7BBT3              	100.00%		L0PFD9              	100.00%
Bootstrap support for F7BBT3 as seed ortholog is 99%.
Bootstrap support for L0PFD9 as seed ortholog is 100%.

Group of orthologs #283. Best score 378 bits
Score difference with first non-orthologous sequence - C.intestinalis:378 P.jiroveci:175

F6YWY7              	100.00%		L0PBH6              	100.00%
Bootstrap support for F6YWY7 as seed ortholog is 100%.
Bootstrap support for L0PBH6 as seed ortholog is 100%.

Group of orthologs #284. Best score 378 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 P.jiroveci:156

F7AXJ1              	100.00%		L0P6U6              	100.00%
Bootstrap support for F7AXJ1 as seed ortholog is 100%.
Bootstrap support for L0P6U6 as seed ortholog is 99%.

Group of orthologs #285. Best score 376 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:376

F6SUS9              	100.00%		L0PB68              	100.00%
Bootstrap support for F6SUS9 as seed ortholog is 99%.
Bootstrap support for L0PB68 as seed ortholog is 100%.

Group of orthologs #286. Best score 376 bits
Score difference with first non-orthologous sequence - C.intestinalis:376 P.jiroveci:376

F7A5J2              	100.00%		L0PFQ8              	100.00%
Bootstrap support for F7A5J2 as seed ortholog is 100%.
Bootstrap support for L0PFQ8 as seed ortholog is 100%.

Group of orthologs #287. Best score 375 bits
Score difference with first non-orthologous sequence - C.intestinalis:375 P.jiroveci:375

F6XP34              	100.00%		L0PF49              	100.00%
Bootstrap support for F6XP34 as seed ortholog is 100%.
Bootstrap support for L0PF49 as seed ortholog is 100%.

Group of orthologs #288. Best score 375 bits
Score difference with first non-orthologous sequence - C.intestinalis:375 P.jiroveci:375

H2Y288              	100.00%		L0PCH8              	100.00%
Bootstrap support for H2Y288 as seed ortholog is 100%.
Bootstrap support for L0PCH8 as seed ortholog is 100%.

Group of orthologs #289. Best score 374 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 P.jiroveci:16

H2XZZ6              	100.00%		L0PCW4              	100.00%
Bootstrap support for H2XZZ6 as seed ortholog is 99%.
Bootstrap support for L0PCW4 as seed ortholog is 68%.
Alternative seed ortholog is L0PFK8 (16 bits away from this cluster)

Group of orthologs #290. Best score 373 bits
Score difference with first non-orthologous sequence - C.intestinalis:373 P.jiroveci:373

F6VUM2              	100.00%		L0PI13              	100.00%
Bootstrap support for F6VUM2 as seed ortholog is 100%.
Bootstrap support for L0PI13 as seed ortholog is 100%.

Group of orthologs #291. Best score 372 bits
Score difference with first non-orthologous sequence - C.intestinalis:372 P.jiroveci:372

F7B0I1              	100.00%		L0PAN7              	100.00%
Bootstrap support for F7B0I1 as seed ortholog is 100%.
Bootstrap support for L0PAN7 as seed ortholog is 100%.

Group of orthologs #292. Best score 371 bits
Score difference with first non-orthologous sequence - C.intestinalis:371 P.jiroveci:371

H2XQX5              	100.00%		L0PET5              	100.00%
Bootstrap support for H2XQX5 as seed ortholog is 100%.
Bootstrap support for L0PET5 as seed ortholog is 100%.

Group of orthologs #293. Best score 370 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 P.jiroveci:370

F6WIL6              	100.00%		L0PB23              	100.00%
Bootstrap support for F6WIL6 as seed ortholog is 100%.
Bootstrap support for L0PB23 as seed ortholog is 100%.

Group of orthologs #294. Best score 370 bits
Score difference with first non-orthologous sequence - C.intestinalis:370 P.jiroveci:370

F6VEU2              	100.00%		L0PFP6              	100.00%
Bootstrap support for F6VEU2 as seed ortholog is 100%.
Bootstrap support for L0PFP6 as seed ortholog is 100%.

Group of orthologs #295. Best score 370 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:370

F6YC60              	100.00%		L0PA26              	100.00%
Bootstrap support for F6YC60 as seed ortholog is 98%.
Bootstrap support for L0PA26 as seed ortholog is 100%.

Group of orthologs #296. Best score 370 bits
Score difference with first non-orthologous sequence - C.intestinalis:370 P.jiroveci:370

F6WLN1              	100.00%		L0PG82              	100.00%
Bootstrap support for F6WLN1 as seed ortholog is 100%.
Bootstrap support for L0PG82 as seed ortholog is 100%.

Group of orthologs #297. Best score 370 bits
Score difference with first non-orthologous sequence - C.intestinalis:241 P.jiroveci:259

H2XLI2              	100.00%		L0P7Z7              	100.00%
Bootstrap support for H2XLI2 as seed ortholog is 100%.
Bootstrap support for L0P7Z7 as seed ortholog is 100%.

Group of orthologs #298. Best score 369 bits
Score difference with first non-orthologous sequence - C.intestinalis:293 P.jiroveci:284

F6UBT3              	100.00%		L0PBY2              	100.00%
Bootstrap support for F6UBT3 as seed ortholog is 100%.
Bootstrap support for L0PBY2 as seed ortholog is 100%.

Group of orthologs #299. Best score 368 bits
Score difference with first non-orthologous sequence - C.intestinalis:368 P.jiroveci:191

H2XUE4              	100.00%		L0PAU1              	100.00%
Bootstrap support for H2XUE4 as seed ortholog is 100%.
Bootstrap support for L0PAU1 as seed ortholog is 100%.

Group of orthologs #300. Best score 368 bits
Score difference with first non-orthologous sequence - C.intestinalis:368 P.jiroveci:368

H2Y1U3              	100.00%		L0PCL9              	100.00%
Bootstrap support for H2Y1U3 as seed ortholog is 100%.
Bootstrap support for L0PCL9 as seed ortholog is 100%.

Group of orthologs #301. Best score 367 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 P.jiroveci:367

F6R472              	100.00%		L0PCE9              	100.00%
Bootstrap support for F6R472 as seed ortholog is 99%.
Bootstrap support for L0PCE9 as seed ortholog is 100%.

Group of orthologs #302. Best score 367 bits
Score difference with first non-orthologous sequence - C.intestinalis:367 P.jiroveci:367

H2XL83              	100.00%		L0PCB2              	100.00%
Bootstrap support for H2XL83 as seed ortholog is 100%.
Bootstrap support for L0PCB2 as seed ortholog is 100%.

Group of orthologs #303. Best score 367 bits
Score difference with first non-orthologous sequence - C.intestinalis:313 P.jiroveci:367

H2XQE4              	100.00%		L0PIR9              	100.00%
Bootstrap support for H2XQE4 as seed ortholog is 100%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #304. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:21 P.jiroveci:366

F6PLA8              	100.00%		L0PH29              	100.00%
Bootstrap support for F6PLA8 as seed ortholog is 75%.
Bootstrap support for L0PH29 as seed ortholog is 100%.

Group of orthologs #305. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:366 P.jiroveci:319

F6Q096              	100.00%		L0PID0              	100.00%
Bootstrap support for F6Q096 as seed ortholog is 100%.
Bootstrap support for L0PID0 as seed ortholog is 100%.

Group of orthologs #306. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 P.jiroveci:366

F6VN41              	100.00%		L0PEY9              	100.00%
Bootstrap support for F6VN41 as seed ortholog is 100%.
Bootstrap support for L0PEY9 as seed ortholog is 100%.

Group of orthologs #307. Best score 364 bits
Score difference with first non-orthologous sequence - C.intestinalis:364 P.jiroveci:364

F6QE47              	100.00%		L0PAC7              	100.00%
Bootstrap support for F6QE47 as seed ortholog is 100%.
Bootstrap support for L0PAC7 as seed ortholog is 100%.

Group of orthologs #308. Best score 363 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 P.jiroveci:363

H2Y130              	100.00%		L0PDV0              	100.00%
Bootstrap support for H2Y130 as seed ortholog is 100%.
Bootstrap support for L0PDV0 as seed ortholog is 100%.

Group of orthologs #309. Best score 360 bits
Score difference with first non-orthologous sequence - C.intestinalis:360 P.jiroveci:360

F7B4V9              	100.00%		L0PE52              	100.00%
                    	       		L0PIN5              	50.53%
Bootstrap support for F7B4V9 as seed ortholog is 100%.
Bootstrap support for L0PE52 as seed ortholog is 100%.

Group of orthologs #310. Best score 360 bits
Score difference with first non-orthologous sequence - C.intestinalis:360 P.jiroveci:360

F6SZY0              	100.00%		L0PBI2              	100.00%
Bootstrap support for F6SZY0 as seed ortholog is 100%.
Bootstrap support for L0PBI2 as seed ortholog is 100%.

Group of orthologs #311. Best score 359 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 P.jiroveci:359

F6WAW7              	100.00%		L0P7P4              	100.00%
Bootstrap support for F6WAW7 as seed ortholog is 100%.
Bootstrap support for L0P7P4 as seed ortholog is 100%.

Group of orthologs #312. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.jiroveci:357

F6T1J8              	100.00%		L0P9R8              	100.00%
Bootstrap support for F6T1J8 as seed ortholog is 99%.
Bootstrap support for L0P9R8 as seed ortholog is 100%.

Group of orthologs #313. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:357 P.jiroveci:357

F7BIS1              	100.00%		L0PC90              	100.00%
Bootstrap support for F7BIS1 as seed ortholog is 100%.
Bootstrap support for L0PC90 as seed ortholog is 100%.

Group of orthologs #314. Best score 356 bits
Score difference with first non-orthologous sequence - C.intestinalis:356 P.jiroveci:356

F6TEN3              	100.00%		L0PF23              	100.00%
F6W3N0              	6.64%		
Bootstrap support for F6TEN3 as seed ortholog is 100%.
Bootstrap support for L0PF23 as seed ortholog is 100%.

Group of orthologs #315. Best score 356 bits
Score difference with first non-orthologous sequence - C.intestinalis:356 P.jiroveci:356

F6W1L1              	100.00%		L0PBA8              	100.00%
F6QI37              	10.34%		
Bootstrap support for F6W1L1 as seed ortholog is 100%.
Bootstrap support for L0PBA8 as seed ortholog is 100%.

Group of orthologs #316. Best score 356 bits
Score difference with first non-orthologous sequence - C.intestinalis:356 P.jiroveci:356

F6UGN5              	100.00%		L0PGF5              	100.00%
Bootstrap support for F6UGN5 as seed ortholog is 100%.
Bootstrap support for L0PGF5 as seed ortholog is 100%.

Group of orthologs #317. Best score 355 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.jiroveci:355

F6S4Q0              	100.00%		L0PA09              	100.00%
Bootstrap support for F6S4Q0 as seed ortholog is 99%.
Bootstrap support for L0PA09 as seed ortholog is 100%.

Group of orthologs #318. Best score 355 bits
Score difference with first non-orthologous sequence - C.intestinalis:286 P.jiroveci:355

F6S1D4              	100.00%		L0PCT5              	100.00%
Bootstrap support for F6S1D4 as seed ortholog is 100%.
Bootstrap support for L0PCT5 as seed ortholog is 100%.

Group of orthologs #319. Best score 354 bits
Score difference with first non-orthologous sequence - C.intestinalis:286 P.jiroveci:354

F6VKI2              	100.00%		L0PD17              	100.00%
Bootstrap support for F6VKI2 as seed ortholog is 100%.
Bootstrap support for L0PD17 as seed ortholog is 100%.

Group of orthologs #320. Best score 352 bits
Score difference with first non-orthologous sequence - C.intestinalis:352 P.jiroveci:352

H2Y164              	100.00%		L0PBY3              	100.00%
Bootstrap support for H2Y164 as seed ortholog is 100%.
Bootstrap support for L0PBY3 as seed ortholog is 100%.

Group of orthologs #321. Best score 351 bits
Score difference with first non-orthologous sequence - C.intestinalis:351 P.jiroveci:351

F6WAY8              	100.00%		L0PDQ3              	100.00%
Bootstrap support for F6WAY8 as seed ortholog is 100%.
Bootstrap support for L0PDQ3 as seed ortholog is 100%.

Group of orthologs #322. Best score 351 bits
Score difference with first non-orthologous sequence - C.intestinalis:351 P.jiroveci:351

F7B580              	100.00%		L0P9X7              	100.00%
Bootstrap support for F7B580 as seed ortholog is 100%.
Bootstrap support for L0P9X7 as seed ortholog is 100%.

Group of orthologs #323. Best score 350 bits
Score difference with first non-orthologous sequence - C.intestinalis:350 P.jiroveci:350

F7AJP1              	100.00%		L0PF21              	100.00%
Bootstrap support for F7AJP1 as seed ortholog is 100%.
Bootstrap support for L0PF21 as seed ortholog is 100%.

Group of orthologs #324. Best score 350 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:350

F7BH52              	100.00%		L0PCP3              	100.00%
Bootstrap support for F7BH52 as seed ortholog is 86%.
Bootstrap support for L0PCP3 as seed ortholog is 100%.

Group of orthologs #325. Best score 348 bits
Score difference with first non-orthologous sequence - C.intestinalis:348 P.jiroveci:348

H2Y3P6              	100.00%		L0PAM5              	100.00%
Bootstrap support for H2Y3P6 as seed ortholog is 100%.
Bootstrap support for L0PAM5 as seed ortholog is 100%.

Group of orthologs #326. Best score 347 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 P.jiroveci:347

F6VZF6              	100.00%		L0PDW0              	100.00%
Bootstrap support for F6VZF6 as seed ortholog is 100%.
Bootstrap support for L0PDW0 as seed ortholog is 100%.

Group of orthologs #327. Best score 347 bits
Score difference with first non-orthologous sequence - C.intestinalis:347 P.jiroveci:139

F6YM78              	100.00%		L0P9K4              	100.00%
Bootstrap support for F6YM78 as seed ortholog is 100%.
Bootstrap support for L0P9K4 as seed ortholog is 99%.

Group of orthologs #328. Best score 347 bits
Score difference with first non-orthologous sequence - C.intestinalis:281 P.jiroveci:347

F6XKQ1              	100.00%		L0PDF2              	100.00%
Bootstrap support for F6XKQ1 as seed ortholog is 100%.
Bootstrap support for L0PDF2 as seed ortholog is 100%.

Group of orthologs #329. Best score 346 bits
Score difference with first non-orthologous sequence - C.intestinalis:346 P.jiroveci:346

F6XDI5              	100.00%		L0PBC5              	100.00%
Bootstrap support for F6XDI5 as seed ortholog is 100%.
Bootstrap support for L0PBC5 as seed ortholog is 100%.

Group of orthologs #330. Best score 344 bits
Score difference with first non-orthologous sequence - C.intestinalis:344 P.jiroveci:253

H2XL44              	100.00%		L0P8W4              	100.00%
Bootstrap support for H2XL44 as seed ortholog is 100%.
Bootstrap support for L0P8W4 as seed ortholog is 100%.

Group of orthologs #331. Best score 343 bits
Score difference with first non-orthologous sequence - C.intestinalis:343 P.jiroveci:343

F6QF37              	100.00%		L0PFY1              	100.00%
Bootstrap support for F6QF37 as seed ortholog is 100%.
Bootstrap support for L0PFY1 as seed ortholog is 100%.

Group of orthologs #332. Best score 342 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 P.jiroveci:342

F6RXZ8              	100.00%		L0PEX9              	100.00%
Bootstrap support for F6RXZ8 as seed ortholog is 100%.
Bootstrap support for L0PEX9 as seed ortholog is 100%.

Group of orthologs #333. Best score 341 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:181

F6RKK1              	100.00%		L0PG34              	100.00%
Bootstrap support for F6RKK1 as seed ortholog is 95%.
Bootstrap support for L0PG34 as seed ortholog is 99%.

Group of orthologs #334. Best score 341 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.jiroveci:341

F6WDL0              	100.00%		L0P8R6              	100.00%
Bootstrap support for F6WDL0 as seed ortholog is 83%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #335. Best score 340 bits
Score difference with first non-orthologous sequence - C.intestinalis:340 P.jiroveci:340

F6YVU0              	100.00%		L0PCR5              	100.00%
                    	       		L0P9C2              	58.71%
Bootstrap support for F6YVU0 as seed ortholog is 100%.
Bootstrap support for L0PCR5 as seed ortholog is 100%.

Group of orthologs #336. Best score 340 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 P.jiroveci:340

F6VNW9              	100.00%		L0P9Y8              	100.00%
Bootstrap support for F6VNW9 as seed ortholog is 70%.
Alternative seed ortholog is F6ZBI9 (22 bits away from this cluster)
Bootstrap support for L0P9Y8 as seed ortholog is 100%.

Group of orthologs #337. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:203

F6SDQ3              	100.00%		L0PAY5              	100.00%
Bootstrap support for F6SDQ3 as seed ortholog is 99%.
Bootstrap support for L0PAY5 as seed ortholog is 100%.

Group of orthologs #338. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:275 P.jiroveci:338

F6THM1              	100.00%		L0PB00              	100.00%
Bootstrap support for F6THM1 as seed ortholog is 100%.
Bootstrap support for L0PB00 as seed ortholog is 100%.

Group of orthologs #339. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 P.jiroveci:159

F7B1X4              	100.00%		L0PCJ5              	100.00%
Bootstrap support for F7B1X4 as seed ortholog is 95%.
Bootstrap support for L0PCJ5 as seed ortholog is 99%.

Group of orthologs #340. Best score 337 bits
Score difference with first non-orthologous sequence - C.intestinalis:337 P.jiroveci:337

Q4H2R2              	100.00%		L0PAF9              	100.00%
F6VQ10              	81.99%		
Bootstrap support for Q4H2R2 as seed ortholog is 100%.
Bootstrap support for L0PAF9 as seed ortholog is 100%.

Group of orthologs #341. Best score 337 bits
Score difference with first non-orthologous sequence - C.intestinalis:337 P.jiroveci:337

F7A172              	100.00%		L0PA42              	100.00%
Bootstrap support for F7A172 as seed ortholog is 100%.
Bootstrap support for L0PA42 as seed ortholog is 100%.

Group of orthologs #342. Best score 337 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 P.jiroveci:337

H2Y0R2              	100.00%		L0P891              	100.00%
Bootstrap support for H2Y0R2 as seed ortholog is 99%.
Bootstrap support for L0P891 as seed ortholog is 100%.

Group of orthologs #343. Best score 336 bits
Score difference with first non-orthologous sequence - C.intestinalis:336 P.jiroveci:336

F6QI83              	100.00%		L0PA00              	100.00%
Bootstrap support for F6QI83 as seed ortholog is 100%.
Bootstrap support for L0PA00 as seed ortholog is 100%.

Group of orthologs #344. Best score 336 bits
Score difference with first non-orthologous sequence - C.intestinalis:295 P.jiroveci:239

F6Z194              	100.00%		L0PB21              	100.00%
Bootstrap support for F6Z194 as seed ortholog is 100%.
Bootstrap support for L0PB21 as seed ortholog is 100%.

Group of orthologs #345. Best score 336 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 P.jiroveci:336

F6YNQ3              	100.00%		L0PCQ8              	100.00%
Bootstrap support for F6YNQ3 as seed ortholog is 65%.
Alternative seed ortholog is F6X7W0 (12 bits away from this cluster)
Bootstrap support for L0PCQ8 as seed ortholog is 100%.

Group of orthologs #346. Best score 335 bits
Score difference with first non-orthologous sequence - C.intestinalis:335 P.jiroveci:335

H2XXR6              	100.00%		L0PG16              	100.00%
Bootstrap support for H2XXR6 as seed ortholog is 100%.
Bootstrap support for L0PG16 as seed ortholog is 100%.

Group of orthologs #347. Best score 334 bits
Score difference with first non-orthologous sequence - C.intestinalis:334 P.jiroveci:334

F6RA65              	100.00%		L0PBN2              	100.00%
Bootstrap support for F6RA65 as seed ortholog is 100%.
Bootstrap support for L0PBN2 as seed ortholog is 100%.

Group of orthologs #348. Best score 334 bits
Score difference with first non-orthologous sequence - C.intestinalis:334 P.jiroveci:334

F6SI05              	100.00%		L0PB60              	100.00%
Bootstrap support for F6SI05 as seed ortholog is 100%.
Bootstrap support for L0PB60 as seed ortholog is 100%.

Group of orthologs #349. Best score 334 bits
Score difference with first non-orthologous sequence - C.intestinalis:334 P.jiroveci:334

F6XQD4              	100.00%		L0PGJ5              	100.00%
Bootstrap support for F6XQD4 as seed ortholog is 100%.
Bootstrap support for L0PGJ5 as seed ortholog is 100%.

Group of orthologs #350. Best score 333 bits
Score difference with first non-orthologous sequence - C.intestinalis:333 P.jiroveci:333

F6RK88              	100.00%		L0PHL3              	100.00%
Bootstrap support for F6RK88 as seed ortholog is 100%.
Bootstrap support for L0PHL3 as seed ortholog is 100%.

Group of orthologs #351. Best score 333 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:113

H2XU69              	100.00%		L0PAW8              	100.00%
Bootstrap support for H2XU69 as seed ortholog is 92%.
Bootstrap support for L0PAW8 as seed ortholog is 97%.

Group of orthologs #352. Best score 332 bits
Score difference with first non-orthologous sequence - C.intestinalis:332 P.jiroveci:332

F6ZX12              	100.00%		L0PD02              	100.00%
Bootstrap support for F6ZX12 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 100%.

Group of orthologs #353. Best score 331 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 P.jiroveci:87

F6Y7P7              	100.00%		L0PAW2              	100.00%
Bootstrap support for F6Y7P7 as seed ortholog is 99%.
Bootstrap support for L0PAW2 as seed ortholog is 95%.

Group of orthologs #354. Best score 330 bits
Score difference with first non-orthologous sequence - C.intestinalis:330 P.jiroveci:330

F6UAX7              	100.00%		L0PBS9              	100.00%
Bootstrap support for F6UAX7 as seed ortholog is 100%.
Bootstrap support for L0PBS9 as seed ortholog is 100%.

Group of orthologs #355. Best score 330 bits
Score difference with first non-orthologous sequence - C.intestinalis:330 P.jiroveci:330

F6TPA2              	100.00%		L0PF46              	100.00%
Bootstrap support for F6TPA2 as seed ortholog is 100%.
Bootstrap support for L0PF46 as seed ortholog is 100%.

Group of orthologs #356. Best score 327 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:98

F6UK45              	100.00%		L0PBU4              	100.00%
Bootstrap support for F6UK45 as seed ortholog is 94%.
Bootstrap support for L0PBU4 as seed ortholog is 94%.

Group of orthologs #357. Best score 327 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:327

H2XLN0              	100.00%		L0PBM9              	100.00%
Bootstrap support for H2XLN0 as seed ortholog is 90%.
Bootstrap support for L0PBM9 as seed ortholog is 100%.

Group of orthologs #358. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 P.jiroveci:326

F7AZV0              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	51.46%
Bootstrap support for F7AZV0 as seed ortholog is 99%.
Bootstrap support for L0PC17 as seed ortholog is 100%.

Group of orthologs #359. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 P.jiroveci:326

F6YHS8              	100.00%		L0PBQ1              	100.00%
Bootstrap support for F6YHS8 as seed ortholog is 100%.
Bootstrap support for L0PBQ1 as seed ortholog is 100%.

Group of orthologs #360. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:326 P.jiroveci:280

F7A713              	100.00%		L0P6U2              	100.00%
Bootstrap support for F7A713 as seed ortholog is 100%.
Bootstrap support for L0P6U2 as seed ortholog is 100%.

Group of orthologs #361. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:326 P.jiroveci:326

F7A1R5              	100.00%		L0PBX2              	100.00%
Bootstrap support for F7A1R5 as seed ortholog is 100%.
Bootstrap support for L0PBX2 as seed ortholog is 100%.

Group of orthologs #362. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 P.jiroveci:326

H2XVC3              	100.00%		L0PBQ9              	100.00%
Bootstrap support for H2XVC3 as seed ortholog is 100%.
Bootstrap support for L0PBQ9 as seed ortholog is 100%.

Group of orthologs #363. Best score 325 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:123

F7AZI8              	100.00%		L0PF10              	100.00%
Bootstrap support for F7AZI8 as seed ortholog is 99%.
Bootstrap support for L0PF10 as seed ortholog is 99%.

Group of orthologs #364. Best score 324 bits
Score difference with first non-orthologous sequence - C.intestinalis:324 P.jiroveci:324

F6YA95              	100.00%		L0PED5              	100.00%
Bootstrap support for F6YA95 as seed ortholog is 100%.
Bootstrap support for L0PED5 as seed ortholog is 100%.

Group of orthologs #365. Best score 321 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:262

F6TJJ7              	100.00%		L0P942              	100.00%
                    	       		L0P7J6              	60.68%
Bootstrap support for F6TJJ7 as seed ortholog is 93%.
Bootstrap support for L0P942 as seed ortholog is 100%.

Group of orthologs #366. Best score 321 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.jiroveci:321

F6YKJ2              	100.00%		L0PBM5              	100.00%
Bootstrap support for F6YKJ2 as seed ortholog is 95%.
Bootstrap support for L0PBM5 as seed ortholog is 100%.

Group of orthologs #367. Best score 320 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.jiroveci:51

H2XZY0              	100.00%		L0PFY3              	100.00%
Bootstrap support for H2XZY0 as seed ortholog is 97%.
Bootstrap support for L0PFY3 as seed ortholog is 86%.

Group of orthologs #368. Best score 319 bits
Score difference with first non-orthologous sequence - C.intestinalis:319 P.jiroveci:319

F6PKD1              	100.00%		L0PBD2              	100.00%
Bootstrap support for F6PKD1 as seed ortholog is 100%.
Bootstrap support for L0PBD2 as seed ortholog is 100%.

Group of orthologs #369. Best score 319 bits
Score difference with first non-orthologous sequence - C.intestinalis:319 P.jiroveci:319

F6SID0              	100.00%		L0P8R5              	100.00%
Bootstrap support for F6SID0 as seed ortholog is 100%.
Bootstrap support for L0P8R5 as seed ortholog is 100%.

Group of orthologs #370. Best score 319 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 P.jiroveci:232

F6W9I8              	100.00%		L0PHI3              	100.00%
Bootstrap support for F6W9I8 as seed ortholog is 99%.
Bootstrap support for L0PHI3 as seed ortholog is 100%.

Group of orthologs #371. Best score 317 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 P.jiroveci:317

F6ZGT0              	100.00%		L0PHC2              	100.00%
                    	       		L0P930              	61.32%
Bootstrap support for F6ZGT0 as seed ortholog is 100%.
Bootstrap support for L0PHC2 as seed ortholog is 100%.

Group of orthologs #372. Best score 317 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.jiroveci:317

F6TC27              	100.00%		L0P8N0              	100.00%
Bootstrap support for F6TC27 as seed ortholog is 99%.
Bootstrap support for L0P8N0 as seed ortholog is 100%.

Group of orthologs #373. Best score 317 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:317

H2XP51              	100.00%		L0PEJ3              	100.00%
Bootstrap support for H2XP51 as seed ortholog is 99%.
Bootstrap support for L0PEJ3 as seed ortholog is 100%.

Group of orthologs #374. Best score 316 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.jiroveci:230

F6XWW8              	100.00%		L0PCV1              	100.00%
Bootstrap support for F6XWW8 as seed ortholog is 90%.
Bootstrap support for L0PCV1 as seed ortholog is 100%.

Group of orthologs #375. Best score 314 bits
Score difference with first non-orthologous sequence - C.intestinalis:314 P.jiroveci:314

F6TC91              	100.00%		L0PAL9              	100.00%
                    	       		L0PBY7              	41.57%
Bootstrap support for F6TC91 as seed ortholog is 100%.
Bootstrap support for L0PAL9 as seed ortholog is 100%.

Group of orthologs #376. Best score 314 bits
Score difference with first non-orthologous sequence - C.intestinalis:314 P.jiroveci:314

F6TXT5              	100.00%		L0P9X4              	100.00%
Bootstrap support for F6TXT5 as seed ortholog is 100%.
Bootstrap support for L0P9X4 as seed ortholog is 100%.

Group of orthologs #377. Best score 314 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:314

H2XS37              	100.00%		L0PFE9              	100.00%
Bootstrap support for H2XS37 as seed ortholog is 99%.
Bootstrap support for L0PFE9 as seed ortholog is 100%.

Group of orthologs #378. Best score 313 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 P.jiroveci:269

F6ZUD0              	100.00%		L0P8I1              	100.00%
Bootstrap support for F6ZUD0 as seed ortholog is 100%.
Bootstrap support for L0P8I1 as seed ortholog is 100%.

Group of orthologs #379. Best score 313 bits
Score difference with first non-orthologous sequence - C.intestinalis:313 P.jiroveci:313

F6X600              	100.00%		L0PHG9              	100.00%
Bootstrap support for F6X600 as seed ortholog is 100%.
Bootstrap support for L0PHG9 as seed ortholog is 100%.

Group of orthologs #380. Best score 313 bits
Score difference with first non-orthologous sequence - C.intestinalis:313 P.jiroveci:313

F6YIY8              	100.00%		L0PEB2              	100.00%
Bootstrap support for F6YIY8 as seed ortholog is 100%.
Bootstrap support for L0PEB2 as seed ortholog is 100%.

Group of orthologs #381. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:312 P.jiroveci:312

F6V5Q8              	15.48%		L0P7X9              	100.00%
F6SZT6              	100.00%		L0PBE2              	100.00%
F6X923              	6.27%		
H2XYZ3              	5.73%		
Bootstrap support for F6SZT6 as seed ortholog is 100%.
Bootstrap support for L0P7X9 as seed ortholog is 100%.
Bootstrap support for L0PBE2 as seed ortholog is 100%.

Group of orthologs #382. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 P.jiroveci:207

F6WVT9              	100.00%		L0PEF1              	100.00%
F6QZH0              	13.84%		
Bootstrap support for F6WVT9 as seed ortholog is 99%.
Bootstrap support for L0PEF1 as seed ortholog is 100%.

Group of orthologs #383. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:312 P.jiroveci:312

F6R8X1              	100.00%		L0PCK3              	100.00%
Bootstrap support for F6R8X1 as seed ortholog is 100%.
Bootstrap support for L0PCK3 as seed ortholog is 100%.

Group of orthologs #384. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:312 P.jiroveci:312

F6TDD6              	100.00%		L0P9G9              	100.00%
Bootstrap support for F6TDD6 as seed ortholog is 100%.
Bootstrap support for L0P9G9 as seed ortholog is 100%.

Group of orthologs #385. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:312 P.jiroveci:312

F6W141              	100.00%		L0P7N5              	100.00%
Bootstrap support for F6W141 as seed ortholog is 100%.
Bootstrap support for L0P7N5 as seed ortholog is 100%.

Group of orthologs #386. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 P.jiroveci:312

F6XMP8              	100.00%		L0P802              	100.00%
Bootstrap support for F6XMP8 as seed ortholog is 100%.
Bootstrap support for L0P802 as seed ortholog is 100%.

Group of orthologs #387. Best score 312 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.jiroveci:11

F7ARV5              	100.00%		L0PAY3              	100.00%
Bootstrap support for F7ARV5 as seed ortholog is 90%.
Bootstrap support for L0PAY3 as seed ortholog is 65%.
Alternative seed ortholog is L0PCJ3 (11 bits away from this cluster)

Group of orthologs #388. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:239 P.jiroveci:311

F6U3Q1              	100.00%		L0PC62              	100.00%
Bootstrap support for F6U3Q1 as seed ortholog is 100%.
Bootstrap support for L0PC62 as seed ortholog is 100%.

Group of orthologs #389. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:311 P.jiroveci:311

H2XWZ0              	100.00%		L0P8A6              	100.00%
Bootstrap support for H2XWZ0 as seed ortholog is 100%.
Bootstrap support for L0P8A6 as seed ortholog is 100%.

Group of orthologs #390. Best score 310 bits
Score difference with first non-orthologous sequence - C.intestinalis:310 P.jiroveci:310

F6QAP0              	100.00%		L0PAC0              	100.00%
Bootstrap support for F6QAP0 as seed ortholog is 100%.
Bootstrap support for L0PAC0 as seed ortholog is 100%.

Group of orthologs #391. Best score 310 bits
Score difference with first non-orthologous sequence - C.intestinalis:310 P.jiroveci:310

F6W713              	100.00%		L0PHK3              	100.00%
Bootstrap support for F6W713 as seed ortholog is 100%.
Bootstrap support for L0PHK3 as seed ortholog is 100%.

Group of orthologs #392. Best score 307 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 P.jiroveci:307

F6W7N8              	100.00%		L0PGL1              	100.00%
Bootstrap support for F6W7N8 as seed ortholog is 100%.
Bootstrap support for L0PGL1 as seed ortholog is 100%.

Group of orthologs #393. Best score 306 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 P.jiroveci:306

F6W8D0              	100.00%		L0PF98              	100.00%
Bootstrap support for F6W8D0 as seed ortholog is 56%.
Alternative seed ortholog is H2Y2C6 (15 bits away from this cluster)
Bootstrap support for L0PF98 as seed ortholog is 100%.

Group of orthologs #394. Best score 306 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 P.jiroveci:215

F6ZUU0              	100.00%		L0P966              	100.00%
Bootstrap support for F6ZUU0 as seed ortholog is 99%.
Bootstrap support for L0P966 as seed ortholog is 100%.

Group of orthologs #395. Best score 306 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 P.jiroveci:306

H2XT24              	100.00%		L0PF71              	100.00%
Bootstrap support for H2XT24 as seed ortholog is 100%.
Bootstrap support for L0PF71 as seed ortholog is 100%.

Group of orthologs #396. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 P.jiroveci:305

F6XMM6              	100.00%		L0PEZ2              	100.00%
                    	       		L0PH30              	85.90%
Bootstrap support for F6XMM6 as seed ortholog is 100%.
Bootstrap support for L0PEZ2 as seed ortholog is 100%.

Group of orthologs #397. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 P.jiroveci:305

F6YQR4              	100.00%		L0PCX5              	100.00%
Bootstrap support for F6YQR4 as seed ortholog is 100%.
Bootstrap support for L0PCX5 as seed ortholog is 100%.

Group of orthologs #398. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 P.jiroveci:305

H2XPV7              	100.00%		L0PBZ7              	100.00%
Bootstrap support for H2XPV7 as seed ortholog is 100%.
Bootstrap support for L0PBZ7 as seed ortholog is 100%.

Group of orthologs #399. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 P.jiroveci:302

F6V8V5              	100.00%		L0PG89              	100.00%
H2Y0H5              	35.90%		
Bootstrap support for F6V8V5 as seed ortholog is 100%.
Bootstrap support for L0PG89 as seed ortholog is 100%.

Group of orthologs #400. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:302 P.jiroveci:302

F6TGK6              	100.00%		L0PBP4              	100.00%
Bootstrap support for F6TGK6 as seed ortholog is 100%.
Bootstrap support for L0PBP4 as seed ortholog is 100%.

Group of orthologs #401. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:302 P.jiroveci:302

F6WHS8              	100.00%		L0PCU5              	100.00%
Bootstrap support for F6WHS8 as seed ortholog is 100%.
Bootstrap support for L0PCU5 as seed ortholog is 100%.

Group of orthologs #402. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:302 P.jiroveci:302

F6YEQ8              	100.00%		L0P8R8              	100.00%
Bootstrap support for F6YEQ8 as seed ortholog is 100%.
Bootstrap support for L0P8R8 as seed ortholog is 100%.

Group of orthologs #403. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 P.jiroveci:302

F6WRI9              	100.00%		L0PEH7              	100.00%
Bootstrap support for F6WRI9 as seed ortholog is 100%.
Bootstrap support for L0PEH7 as seed ortholog is 100%.

Group of orthologs #404. Best score 301 bits
Score difference with first non-orthologous sequence - C.intestinalis:301 P.jiroveci:301

F6YX67              	100.00%		L0PAU5              	100.00%
Bootstrap support for F6YX67 as seed ortholog is 100%.
Bootstrap support for L0PAU5 as seed ortholog is 100%.

Group of orthologs #405. Best score 300 bits
Score difference with first non-orthologous sequence - C.intestinalis:300 P.jiroveci:300

F6QNL7              	100.00%		L0PEL5              	100.00%
                    	       		L0PGC2              	100.00%
Bootstrap support for F6QNL7 as seed ortholog is 100%.
Bootstrap support for L0PEL5 as seed ortholog is 100%.
Bootstrap support for L0PGC2 as seed ortholog is 100%.

Group of orthologs #406. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 P.jiroveci:299

F6QHP8              	100.00%		L0PFC9              	100.00%
Bootstrap support for F6QHP8 as seed ortholog is 100%.
Bootstrap support for L0PFC9 as seed ortholog is 100%.

Group of orthologs #407. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 P.jiroveci:253

F6VXM8              	100.00%		L0PC30              	100.00%
Bootstrap support for F6VXM8 as seed ortholog is 100%.
Bootstrap support for L0PC30 as seed ortholog is 100%.

Group of orthologs #408. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 P.jiroveci:299

F6WNR2              	100.00%		L0PCY9              	100.00%
Bootstrap support for F6WNR2 as seed ortholog is 100%.
Bootstrap support for L0PCY9 as seed ortholog is 100%.

Group of orthologs #409. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 P.jiroveci:299

F7BLS5              	100.00%		L0P8N3              	100.00%
Bootstrap support for F7BLS5 as seed ortholog is 100%.
Bootstrap support for L0P8N3 as seed ortholog is 100%.

Group of orthologs #410. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:42

F7BAT7              	100.00%		L0PD03              	100.00%
Bootstrap support for F7BAT7 as seed ortholog is 100%.
Bootstrap support for L0PD03 as seed ortholog is 93%.

Group of orthologs #411. Best score 298 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 P.jiroveci:298

F6PN41              	100.00%		L0PDC7              	100.00%
Bootstrap support for F6PN41 as seed ortholog is 100%.
Bootstrap support for L0PDC7 as seed ortholog is 100%.

Group of orthologs #412. Best score 298 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 P.jiroveci:82

F7AQE7              	100.00%		L0PB70              	100.00%
Bootstrap support for F7AQE7 as seed ortholog is 100%.
Bootstrap support for L0PB70 as seed ortholog is 99%.

Group of orthologs #413. Best score 298 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.jiroveci:186

F7AUM2              	100.00%		L0PGH8              	100.00%
Bootstrap support for F7AUM2 as seed ortholog is 97%.
Bootstrap support for L0PGH8 as seed ortholog is 100%.

Group of orthologs #414. Best score 297 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 P.jiroveci:297

F6XPL3              	26.38%		L0P8E8              	100.00%
F7B875              	100.00%		L0PEB0              	100.00%
F7AAZ2              	12.11%		
Bootstrap support for F7B875 as seed ortholog is 93%.
Bootstrap support for L0P8E8 as seed ortholog is 100%.
Bootstrap support for L0PEB0 as seed ortholog is 100%.

Group of orthologs #415. Best score 297 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 P.jiroveci:297

H2Y2K5              	100.00%		L0PFY2              	100.00%
F6VXL3              	36.48%		
Bootstrap support for H2Y2K5 as seed ortholog is 100%.
Bootstrap support for L0PFY2 as seed ortholog is 100%.

Group of orthologs #416. Best score 297 bits
Score difference with first non-orthologous sequence - C.intestinalis:297 P.jiroveci:297

F6X3S3              	100.00%		L0P8J2              	100.00%
Bootstrap support for F6X3S3 as seed ortholog is 100%.
Bootstrap support for L0P8J2 as seed ortholog is 100%.

Group of orthologs #417. Best score 297 bits
Score difference with first non-orthologous sequence - C.intestinalis:297 P.jiroveci:297

F7AGW4              	100.00%		L0PBT3              	100.00%
Bootstrap support for F7AGW4 as seed ortholog is 100%.
Bootstrap support for L0PBT3 as seed ortholog is 100%.

Group of orthologs #418. Best score 296 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:296

F6PJM3              	100.00%		L0PEG2              	100.00%
Bootstrap support for F6PJM3 as seed ortholog is 99%.
Bootstrap support for L0PEG2 as seed ortholog is 100%.

Group of orthologs #419. Best score 296 bits
Score difference with first non-orthologous sequence - C.intestinalis:296 P.jiroveci:296

F6W318              	100.00%		L0PF92              	100.00%
Bootstrap support for F6W318 as seed ortholog is 100%.
Bootstrap support for L0PF92 as seed ortholog is 100%.

Group of orthologs #420. Best score 296 bits
Score difference with first non-orthologous sequence - C.intestinalis:296 P.jiroveci:296

H2Y3D5              	100.00%		L0PC44              	100.00%
Bootstrap support for H2Y3D5 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #421. Best score 295 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 P.jiroveci:295

F6VHI4              	100.00%		L0P865              	100.00%
Bootstrap support for F6VHI4 as seed ortholog is 99%.
Bootstrap support for L0P865 as seed ortholog is 100%.

Group of orthologs #422. Best score 295 bits
Score difference with first non-orthologous sequence - C.intestinalis:295 P.jiroveci:295

F6Y7E9              	100.00%		L0PCG0              	100.00%
Bootstrap support for F6Y7E9 as seed ortholog is 100%.
Bootstrap support for L0PCG0 as seed ortholog is 100%.

Group of orthologs #423. Best score 295 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 P.jiroveci:295

H2XYW0              	100.00%		L0PDL9              	100.00%
Bootstrap support for H2XYW0 as seed ortholog is 100%.
Bootstrap support for L0PDL9 as seed ortholog is 100%.

Group of orthologs #424. Best score 294 bits
Score difference with first non-orthologous sequence - C.intestinalis:294 P.jiroveci:294

F6UFF5              	100.00%		L0PD68              	100.00%
Bootstrap support for F6UFF5 as seed ortholog is 100%.
Bootstrap support for L0PD68 as seed ortholog is 100%.

Group of orthologs #425. Best score 294 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:294

H2XQ03              	100.00%		L0P983              	100.00%
Bootstrap support for H2XQ03 as seed ortholog is 91%.
Bootstrap support for L0P983 as seed ortholog is 100%.

Group of orthologs #426. Best score 292 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 P.jiroveci:39

F6R4H2              	100.00%		L0PD71              	100.00%
Bootstrap support for F6R4H2 as seed ortholog is 81%.
Bootstrap support for L0PD71 as seed ortholog is 88%.

Group of orthologs #427. Best score 291 bits
Score difference with first non-orthologous sequence - C.intestinalis:291 P.jiroveci:291

F7B658              	100.00%		L0P8X1              	100.00%
Bootstrap support for F7B658 as seed ortholog is 100%.
Bootstrap support for L0P8X1 as seed ortholog is 100%.

Group of orthologs #428. Best score 291 bits
Score difference with first non-orthologous sequence - C.intestinalis:291 P.jiroveci:291

F7B2R9              	100.00%		L0PDV1              	100.00%
Bootstrap support for F7B2R9 as seed ortholog is 100%.
Bootstrap support for L0PDV1 as seed ortholog is 100%.

Group of orthologs #429. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 P.jiroveci:290

F6XUD5              	100.00%		L0PEC0              	100.00%
F6V9F0              	36.35%		
Bootstrap support for F6XUD5 as seed ortholog is 100%.
Bootstrap support for L0PEC0 as seed ortholog is 100%.

Group of orthologs #430. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 P.jiroveci:290

F6SIX8              	100.00%		L0P9B8              	100.00%
Bootstrap support for F6SIX8 as seed ortholog is 100%.
Bootstrap support for L0P9B8 as seed ortholog is 100%.

Group of orthologs #431. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 P.jiroveci:290

F6Q8V8              	100.00%		L0PFI8              	100.00%
Bootstrap support for F6Q8V8 as seed ortholog is 100%.
Bootstrap support for L0PFI8 as seed ortholog is 100%.

Group of orthologs #432. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:289 P.jiroveci:289

F7A912              	100.00%		L0PFG1              	100.00%
Bootstrap support for F7A912 as seed ortholog is 100%.
Bootstrap support for L0PFG1 as seed ortholog is 100%.

Group of orthologs #433. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:289 P.jiroveci:289

H2Y3Q6              	100.00%		L0PF83              	100.00%
Bootstrap support for H2Y3Q6 as seed ortholog is 100%.
Bootstrap support for L0PF83 as seed ortholog is 100%.

Group of orthologs #434. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:287 P.jiroveci:48

F6SI15              	100.00%		L0PA63              	100.00%
Bootstrap support for F6SI15 as seed ortholog is 100%.
Bootstrap support for L0PA63 as seed ortholog is 74%.
Alternative seed ortholog is L0PIP5 (48 bits away from this cluster)

Group of orthologs #435. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 P.jiroveci:246

F6TIU3              	100.00%		L0PAL2              	100.00%
Bootstrap support for F6TIU3 as seed ortholog is 100%.
Bootstrap support for L0PAL2 as seed ortholog is 100%.

Group of orthologs #436. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 P.jiroveci:232

F6XT60              	100.00%		L0P8I7              	100.00%
Bootstrap support for F6XT60 as seed ortholog is 99%.
Bootstrap support for L0P8I7 as seed ortholog is 100%.

Group of orthologs #437. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 P.jiroveci:99

F6X4N7              	100.00%		L0PEA7              	100.00%
Bootstrap support for F6X4N7 as seed ortholog is 100%.
Bootstrap support for L0PEA7 as seed ortholog is 99%.

Group of orthologs #438. Best score 286 bits
Score difference with first non-orthologous sequence - C.intestinalis:286 P.jiroveci:286

F6Q5D4              	100.00%		L0P9W3              	100.00%
Bootstrap support for F6Q5D4 as seed ortholog is 100%.
Bootstrap support for L0P9W3 as seed ortholog is 100%.

Group of orthologs #439. Best score 286 bits
Score difference with first non-orthologous sequence - C.intestinalis:244 P.jiroveci:286

F6TMB1              	100.00%		L0P8L5              	100.00%
Bootstrap support for F6TMB1 as seed ortholog is 100%.
Bootstrap support for L0P8L5 as seed ortholog is 100%.

Group of orthologs #440. Best score 286 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:286

F7A1S8              	100.00%		L0PDZ2              	100.00%
Bootstrap support for F7A1S8 as seed ortholog is 100%.
Bootstrap support for L0PDZ2 as seed ortholog is 100%.

Group of orthologs #441. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 P.jiroveci:285

F6SQQ1              	100.00%		L0PEV9              	100.00%
Bootstrap support for F6SQQ1 as seed ortholog is 100%.
Bootstrap support for L0PEV9 as seed ortholog is 100%.

Group of orthologs #442. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 P.jiroveci:148

F6TQG1              	100.00%		L0PDB7              	100.00%
Bootstrap support for F6TQG1 as seed ortholog is 100%.
Bootstrap support for L0PDB7 as seed ortholog is 99%.

Group of orthologs #443. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 P.jiroveci:285

F6YH10              	100.00%		L0P8B2              	100.00%
Bootstrap support for F6YH10 as seed ortholog is 100%.
Bootstrap support for L0P8B2 as seed ortholog is 100%.

Group of orthologs #444. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 P.jiroveci:285

F6Z672              	100.00%		L0PF30              	100.00%
Bootstrap support for F6Z672 as seed ortholog is 100%.
Bootstrap support for L0PF30 as seed ortholog is 100%.

Group of orthologs #445. Best score 284 bits
Score difference with first non-orthologous sequence - C.intestinalis:284 P.jiroveci:284

F6XDT3              	100.00%		L0PG86              	100.00%
Bootstrap support for F6XDT3 as seed ortholog is 100%.
Bootstrap support for L0PG86 as seed ortholog is 100%.

Group of orthologs #446. Best score 283 bits
Score difference with first non-orthologous sequence - C.intestinalis:283 P.jiroveci:283

F6SHZ7              	100.00%		L0P7I8              	100.00%
Bootstrap support for F6SHZ7 as seed ortholog is 100%.
Bootstrap support for L0P7I8 as seed ortholog is 100%.

Group of orthologs #447. Best score 283 bits
Score difference with first non-orthologous sequence - C.intestinalis:283 P.jiroveci:283

Q1RPZ2              	100.00%		L0PDI7              	100.00%
Bootstrap support for Q1RPZ2 as seed ortholog is 100%.
Bootstrap support for L0PDI7 as seed ortholog is 100%.

Group of orthologs #448. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:282 P.jiroveci:282

F6RC25              	100.00%		L0PCJ2              	100.00%
Bootstrap support for F6RC25 as seed ortholog is 100%.
Bootstrap support for L0PCJ2 as seed ortholog is 100%.

Group of orthologs #449. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:282 P.jiroveci:282

F6WUM1              	100.00%		L0P9B6              	100.00%
Bootstrap support for F6WUM1 as seed ortholog is 100%.
Bootstrap support for L0P9B6 as seed ortholog is 100%.

Group of orthologs #450. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:190 P.jiroveci:222

F6VQ02              	100.00%		L0PE04              	100.00%
Bootstrap support for F6VQ02 as seed ortholog is 100%.
Bootstrap support for L0PE04 as seed ortholog is 100%.

Group of orthologs #451. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.jiroveci:183

F6Z0V8              	100.00%		L0P8B4              	100.00%
Bootstrap support for F6Z0V8 as seed ortholog is 97%.
Bootstrap support for L0P8B4 as seed ortholog is 100%.

Group of orthologs #452. Best score 281 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.jiroveci:175

F6STU7              	100.00%		L0PB10              	100.00%
Bootstrap support for F6STU7 as seed ortholog is 99%.
Bootstrap support for L0PB10 as seed ortholog is 100%.

Group of orthologs #453. Best score 281 bits
Score difference with first non-orthologous sequence - C.intestinalis:281 P.jiroveci:281

F6TFE2              	100.00%		L0PAJ2              	100.00%
Bootstrap support for F6TFE2 as seed ortholog is 100%.
Bootstrap support for L0PAJ2 as seed ortholog is 100%.

Group of orthologs #454. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 P.jiroveci:280

F6U2U3              	100.00%		L0PAQ1              	100.00%
Bootstrap support for F6U2U3 as seed ortholog is 100%.
Bootstrap support for L0PAQ1 as seed ortholog is 100%.

Group of orthologs #455. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.jiroveci:230

F6WWW4              	100.00%		L0PBK1              	100.00%
Bootstrap support for F6WWW4 as seed ortholog is 99%.
Bootstrap support for L0PBK1 as seed ortholog is 100%.

Group of orthologs #456. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 P.jiroveci:280

F6ZIP8              	100.00%		L0P8T4              	100.00%
Bootstrap support for F6ZIP8 as seed ortholog is 100%.
Bootstrap support for L0P8T4 as seed ortholog is 100%.

Group of orthologs #457. Best score 279 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 P.jiroveci:279

F6TEZ1              	100.00%		L0PAP4              	100.00%
Bootstrap support for F6TEZ1 as seed ortholog is 100%.
Bootstrap support for L0PAP4 as seed ortholog is 100%.

Group of orthologs #458. Best score 279 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 P.jiroveci:222

F6R3W0              	100.00%		L0PGP6              	100.00%
Bootstrap support for F6R3W0 as seed ortholog is 100%.
Bootstrap support for L0PGP6 as seed ortholog is 100%.

Group of orthologs #459. Best score 279 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 P.jiroveci:233

F6TFD0              	100.00%		L0PFE0              	100.00%
Bootstrap support for F6TFD0 as seed ortholog is 99%.
Bootstrap support for L0PFE0 as seed ortholog is 100%.

Group of orthologs #460. Best score 278 bits
Score difference with first non-orthologous sequence - C.intestinalis:278 P.jiroveci:278

H2XM50              	100.00%		L0PDY1              	100.00%
F6R614              	37.62%		
Bootstrap support for H2XM50 as seed ortholog is 100%.
Bootstrap support for L0PDY1 as seed ortholog is 100%.

Group of orthologs #461. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:277 P.jiroveci:277

F6SS61              	100.00%		L0P9T2              	100.00%
Bootstrap support for F6SS61 as seed ortholog is 100%.
Bootstrap support for L0P9T2 as seed ortholog is 100%.

Group of orthologs #462. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 P.jiroveci:277

F6R683              	100.00%		L0PHJ3              	100.00%
Bootstrap support for F6R683 as seed ortholog is 100%.
Bootstrap support for L0PHJ3 as seed ortholog is 100%.

Group of orthologs #463. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:277 P.jiroveci:277

F6Z7S0              	100.00%		L0PEY2              	100.00%
Bootstrap support for F6Z7S0 as seed ortholog is 100%.
Bootstrap support for L0PEY2 as seed ortholog is 100%.

Group of orthologs #464. Best score 276 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 P.jiroveci:276

F6Q601              	100.00%		L0PGV8              	100.00%
Bootstrap support for F6Q601 as seed ortholog is 100%.
Bootstrap support for L0PGV8 as seed ortholog is 100%.

Group of orthologs #465. Best score 276 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 P.jiroveci:276

F7BF26              	100.00%		L0P9S7              	100.00%
Bootstrap support for F7BF26 as seed ortholog is 100%.
Bootstrap support for L0P9S7 as seed ortholog is 100%.

Group of orthologs #466. Best score 275 bits
Score difference with first non-orthologous sequence - C.intestinalis:179 P.jiroveci:275

F6SZU4              	100.00%		L0PGR0              	100.00%
F6T060              	76.92%		
Bootstrap support for F6SZU4 as seed ortholog is 100%.
Bootstrap support for L0PGR0 as seed ortholog is 100%.

Group of orthologs #467. Best score 275 bits
Score difference with first non-orthologous sequence - C.intestinalis:275 P.jiroveci:129

F6T0J5              	100.00%		L0PB03              	100.00%
Bootstrap support for F6T0J5 as seed ortholog is 100%.
Bootstrap support for L0PB03 as seed ortholog is 99%.

Group of orthologs #468. Best score 275 bits
Score difference with first non-orthologous sequence - C.intestinalis:275 P.jiroveci:137

F6Z491              	100.00%		L0PFS8              	100.00%
Bootstrap support for F6Z491 as seed ortholog is 100%.
Bootstrap support for L0PFS8 as seed ortholog is 100%.

Group of orthologs #469. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:274 P.jiroveci:274

F6RN60              	100.00%		L0PB28              	100.00%
Bootstrap support for F6RN60 as seed ortholog is 100%.
Bootstrap support for L0PB28 as seed ortholog is 100%.

Group of orthologs #470. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:274 P.jiroveci:274

F6QY24              	100.00%		L0PF79              	100.00%
Bootstrap support for F6QY24 as seed ortholog is 100%.
Bootstrap support for L0PF79 as seed ortholog is 100%.

Group of orthologs #471. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:274 P.jiroveci:274

F6ZLM3              	100.00%		L0PHG7              	100.00%
Bootstrap support for F6ZLM3 as seed ortholog is 100%.
Bootstrap support for L0PHG7 as seed ortholog is 100%.

Group of orthologs #472. Best score 272 bits
Score difference with first non-orthologous sequence - C.intestinalis:272 P.jiroveci:272

F7AI93              	100.00%		L0PBT9              	100.00%
                    	       		L0P9Y0              	44.04%
Bootstrap support for F7AI93 as seed ortholog is 100%.
Bootstrap support for L0PBT9 as seed ortholog is 100%.

Group of orthologs #473. Best score 271 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 P.jiroveci:271

F6SLC8              	100.00%		L0P9P0              	100.00%
Bootstrap support for F6SLC8 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #474. Best score 270 bits
Score difference with first non-orthologous sequence - C.intestinalis:270 P.jiroveci:4

H2Y169              	100.00%		L0PCM1              	100.00%
F6V5P8              	5.46%		
Bootstrap support for H2Y169 as seed ortholog is 100%.
Bootstrap support for L0PCM1 as seed ortholog is 55%.
Alternative seed ortholog is L0PAI9 (4 bits away from this cluster)

Group of orthologs #475. Best score 270 bits
Score difference with first non-orthologous sequence - C.intestinalis:270 P.jiroveci:270

F6ZCS4              	100.00%		L0PFZ0              	100.00%
Bootstrap support for F6ZCS4 as seed ortholog is 100%.
Bootstrap support for L0PFZ0 as seed ortholog is 100%.

Group of orthologs #476. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 P.jiroveci:269

F6TTI3              	100.00%		L0PEM3              	100.00%
Bootstrap support for F6TTI3 as seed ortholog is 99%.
Bootstrap support for L0PEM3 as seed ortholog is 100%.

Group of orthologs #477. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:269 P.jiroveci:269

F7BH80              	100.00%		L0PC61              	100.00%
Bootstrap support for F7BH80 as seed ortholog is 100%.
Bootstrap support for L0PC61 as seed ortholog is 100%.

Group of orthologs #478. Best score 268 bits
Score difference with first non-orthologous sequence - C.intestinalis:268 P.jiroveci:268

F6YYA5              	100.00%		L0PDA9              	100.00%
Bootstrap support for F6YYA5 as seed ortholog is 100%.
Bootstrap support for L0PDA9 as seed ortholog is 100%.

Group of orthologs #479. Best score 268 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 P.jiroveci:90

Q4H383              	100.00%		L0PB47              	100.00%
Bootstrap support for Q4H383 as seed ortholog is 83%.
Bootstrap support for L0PB47 as seed ortholog is 99%.

Group of orthologs #480. Best score 267 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 P.jiroveci:134

F6WRV9              	100.00%		L0PEG1              	100.00%
F6YHL8              	36.76%		
Bootstrap support for F6WRV9 as seed ortholog is 100%.
Bootstrap support for L0PEG1 as seed ortholog is 99%.

Group of orthologs #481. Best score 267 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 P.jiroveci:267

F6Z7W1              	100.00%		L0PAA3              	100.00%
Bootstrap support for F6Z7W1 as seed ortholog is 91%.
Bootstrap support for L0PAA3 as seed ortholog is 100%.

Group of orthologs #482. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:266

H2XK79              	100.00%		L0P9F6              	100.00%
H2XS68              	87.80%		
H2XVV3              	26.19%		
Bootstrap support for H2XK79 as seed ortholog is 99%.
Bootstrap support for L0P9F6 as seed ortholog is 100%.

Group of orthologs #483. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 P.jiroveci:266

F6U1E2              	100.00%		L0PDT8              	100.00%
                    	       		L0P9R2              	89.92%
Bootstrap support for F6U1E2 as seed ortholog is 99%.
Bootstrap support for L0PDT8 as seed ortholog is 100%.

Group of orthologs #484. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:266 P.jiroveci:266

F6WQB5              	100.00%		L0P9Z7              	100.00%
Bootstrap support for F6WQB5 as seed ortholog is 100%.
Bootstrap support for L0P9Z7 as seed ortholog is 100%.

Group of orthologs #485. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 P.jiroveci:211

F6ZKW1              	100.00%		L0PEF5              	100.00%
Bootstrap support for F6ZKW1 as seed ortholog is 100%.
Bootstrap support for L0PEF5 as seed ortholog is 100%.

Group of orthologs #486. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 P.jiroveci:148

F7AXN3              	100.00%		L0PBM6              	100.00%
Bootstrap support for F7AXN3 as seed ortholog is 98%.
Bootstrap support for L0PBM6 as seed ortholog is 99%.

Group of orthologs #487. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 P.jiroveci:265

F6UE78              	100.00%		L0PCM9              	100.00%
Bootstrap support for F6UE78 as seed ortholog is 100%.
Bootstrap support for L0PCM9 as seed ortholog is 100%.

Group of orthologs #488. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 P.jiroveci:160

F6XT42              	100.00%		L0P7L8              	100.00%
Bootstrap support for F6XT42 as seed ortholog is 100%.
Bootstrap support for L0P7L8 as seed ortholog is 99%.

Group of orthologs #489. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:264

F6PR32              	100.00%		L0PDF9              	100.00%
Q8WSS1              	42.06%		
H2Y1Q1              	41.16%		
F6SML2              	7.38%		
Bootstrap support for F6PR32 as seed ortholog is 92%.
Bootstrap support for L0PDF9 as seed ortholog is 100%.

Group of orthologs #490. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 P.jiroveci:264

F6YLI3              	100.00%		L0PCH0              	100.00%
H2XKD1              	21.55%		
H2XUD0              	19.97%		
Bootstrap support for F6YLI3 as seed ortholog is 100%.
Bootstrap support for L0PCH0 as seed ortholog is 100%.

Group of orthologs #491. Best score 263 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 P.jiroveci:263

H2XT98              	100.00%		L0PFP2              	100.00%
                    	       		L0PDH7              	7.82%
Bootstrap support for H2XT98 as seed ortholog is 100%.
Bootstrap support for L0PFP2 as seed ortholog is 100%.

Group of orthologs #492. Best score 263 bits
Score difference with first non-orthologous sequence - C.intestinalis:216 P.jiroveci:263

H2XVD5              	100.00%		L0PET2              	100.00%
                    	       		L0PAE5              	84.12%
Bootstrap support for H2XVD5 as seed ortholog is 100%.
Bootstrap support for L0PET2 as seed ortholog is 100%.

Group of orthologs #493. Best score 263 bits
Score difference with first non-orthologous sequence - C.intestinalis:263 P.jiroveci:263

F6WEC9              	100.00%		L0PIC6              	100.00%
Bootstrap support for F6WEC9 as seed ortholog is 100%.
Bootstrap support for L0PIC6 as seed ortholog is 100%.

Group of orthologs #494. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 P.jiroveci:52

F6PNQ0              	100.00%		L0P6X2              	100.00%
Q7YT79              	56.92%		
F6PNI9              	32.31%		
Q7YT74              	13.08%		
Bootstrap support for F6PNQ0 as seed ortholog is 86%.
Bootstrap support for L0P6X2 as seed ortholog is 96%.

Group of orthologs #495. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:262

F6WL19              	100.00%		L0P9S5              	100.00%
F6TNW3              	42.02%		
Bootstrap support for F6WL19 as seed ortholog is 99%.
Bootstrap support for L0P9S5 as seed ortholog is 100%.

Group of orthologs #496. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:75

F6Y940              	100.00%		L0PF08              	100.00%
Bootstrap support for F6Y940 as seed ortholog is 99%.
Bootstrap support for L0PF08 as seed ortholog is 99%.

Group of orthologs #497. Best score 261 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:261

F6UP98              	100.00%		L0PD24              	100.00%
Bootstrap support for F6UP98 as seed ortholog is 99%.
Bootstrap support for L0PD24 as seed ortholog is 100%.

Group of orthologs #498. Best score 261 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 P.jiroveci:261

F6YBW7              	100.00%		L0PHK8              	100.00%
Bootstrap support for F6YBW7 as seed ortholog is 100%.
Bootstrap support for L0PHK8 as seed ortholog is 100%.

Group of orthologs #499. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:38 P.jiroveci:92

F6WNH9              	100.00%		L0PDD3              	100.00%
Bootstrap support for F6WNH9 as seed ortholog is 92%.
Bootstrap support for L0PDD3 as seed ortholog is 99%.

Group of orthologs #500. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:260 P.jiroveci:260

F6Z6H7              	100.00%		L0PA13              	100.00%
Bootstrap support for F6Z6H7 as seed ortholog is 100%.
Bootstrap support for L0PA13 as seed ortholog is 100%.

Group of orthologs #501. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:41 P.jiroveci:117

H2Y1B6              	100.00%		L0PC59              	100.00%
Bootstrap support for H2Y1B6 as seed ortholog is 97%.
Bootstrap support for L0PC59 as seed ortholog is 100%.

Group of orthologs #502. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 P.jiroveci:259

F6S8Z0              	100.00%		L0PFQ3              	100.00%
Bootstrap support for F6S8Z0 as seed ortholog is 100%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #503. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 P.jiroveci:259

F7A5R9              	100.00%		L0PFX9              	100.00%
Bootstrap support for F7A5R9 as seed ortholog is 100%.
Bootstrap support for L0PFX9 as seed ortholog is 100%.

Group of orthologs #504. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 P.jiroveci:259

Q4H3S6              	100.00%		L0PA72              	100.00%
Bootstrap support for Q4H3S6 as seed ortholog is 100%.
Bootstrap support for L0PA72 as seed ortholog is 100%.

Group of orthologs #505. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 P.jiroveci:258

F6WK69              	100.00%		L0P9D3              	100.00%
                    	       		L0P7B2              	55.12%
Bootstrap support for F6WK69 as seed ortholog is 99%.
Bootstrap support for L0P9D3 as seed ortholog is 100%.

Group of orthologs #506. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:23 P.jiroveci:258

F6QRC2              	100.00%		L0PC75              	100.00%
Bootstrap support for F6QRC2 as seed ortholog is 85%.
Bootstrap support for L0PC75 as seed ortholog is 100%.

Group of orthologs #507. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 P.jiroveci:258

F6YLQ9              	100.00%		L0PBY9              	100.00%
Bootstrap support for F6YLQ9 as seed ortholog is 100%.
Bootstrap support for L0PBY9 as seed ortholog is 100%.

Group of orthologs #508. Best score 257 bits
Score difference with first non-orthologous sequence - C.intestinalis:194 P.jiroveci:257

F6WY47              	100.00%		L0PBS3              	100.00%
Bootstrap support for F6WY47 as seed ortholog is 99%.
Bootstrap support for L0PBS3 as seed ortholog is 100%.

Group of orthologs #509. Best score 256 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 P.jiroveci:256

F6TRN8              	100.00%		L0PBK2              	100.00%
Bootstrap support for F6TRN8 as seed ortholog is 100%.
Bootstrap support for L0PBK2 as seed ortholog is 100%.

Group of orthologs #510. Best score 256 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 P.jiroveci:256

H2XVM9              	100.00%		L0P9G7              	100.00%
Bootstrap support for H2XVM9 as seed ortholog is 100%.
Bootstrap support for L0P9G7 as seed ortholog is 100%.

Group of orthologs #511. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 P.jiroveci:255

H2XQB0              	100.00%		L0PIJ3              	100.00%
                    	       		L0PEP1              	82.77%
Bootstrap support for H2XQB0 as seed ortholog is 99%.
Bootstrap support for L0PIJ3 as seed ortholog is 100%.

Group of orthologs #512. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 P.jiroveci:255

F6XLX0              	100.00%		L0PB86              	100.00%
Bootstrap support for F6XLX0 as seed ortholog is 100%.
Bootstrap support for L0PB86 as seed ortholog is 100%.

Group of orthologs #513. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 P.jiroveci:255

F7B4P8              	100.00%		L0P723              	100.00%
Bootstrap support for F7B4P8 as seed ortholog is 100%.
Bootstrap support for L0P723 as seed ortholog is 100%.

Group of orthologs #514. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 P.jiroveci:255

F7BQ53              	100.00%		L0PBH8              	100.00%
Bootstrap support for F7BQ53 as seed ortholog is 100%.
Bootstrap support for L0PBH8 as seed ortholog is 100%.

Group of orthologs #515. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 P.jiroveci:255

H2XPG6              	100.00%		L0PCL4              	100.00%
Bootstrap support for H2XPG6 as seed ortholog is 100%.
Bootstrap support for L0PCL4 as seed ortholog is 100%.

Group of orthologs #516. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 P.jiroveci:254

F6YM02              	100.00%		L0PG22              	100.00%
                    	       		L0PB04              	74.23%
Bootstrap support for F6YM02 as seed ortholog is 100%.
Bootstrap support for L0PG22 as seed ortholog is 100%.

Group of orthologs #517. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:254

Q8I7E2              	100.00%		L0PGD7              	100.00%
                    	       		L0PGQ0              	57.46%
Bootstrap support for Q8I7E2 as seed ortholog is 99%.
Bootstrap support for L0PGD7 as seed ortholog is 100%.

Group of orthologs #518. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 P.jiroveci:136

F6RD19              	100.00%		L0PAM8              	100.00%
Bootstrap support for F6RD19 as seed ortholog is 99%.
Bootstrap support for L0PAM8 as seed ortholog is 99%.

Group of orthologs #519. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:252 P.jiroveci:252

F6RID7              	100.00%		L0PF73              	100.00%
Bootstrap support for F6RID7 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #520. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:252 P.jiroveci:252

F6UA87              	100.00%		L0PG08              	100.00%
Bootstrap support for F6UA87 as seed ortholog is 100%.
Bootstrap support for L0PG08 as seed ortholog is 100%.

Group of orthologs #521. Best score 251 bits
Score difference with first non-orthologous sequence - C.intestinalis:251 P.jiroveci:251

A1XDA5              	100.00%		L0PEY5              	100.00%
Bootstrap support for A1XDA5 as seed ortholog is 100%.
Bootstrap support for L0PEY5 as seed ortholog is 100%.

Group of orthologs #522. Best score 251 bits
Score difference with first non-orthologous sequence - C.intestinalis:251 P.jiroveci:251

F7ACM5              	100.00%		L0PFC0              	100.00%
Bootstrap support for F7ACM5 as seed ortholog is 100%.
Bootstrap support for L0PFC0 as seed ortholog is 100%.

Group of orthologs #523. Best score 250 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:106

H2Y040              	100.00%		L0P9E4              	100.00%
F6TYN3              	38.60%		
H2Y3F2              	35.96%		
Bootstrap support for H2Y040 as seed ortholog is 96%.
Bootstrap support for L0P9E4 as seed ortholog is 99%.

Group of orthologs #524. Best score 249 bits
Score difference with first non-orthologous sequence - C.intestinalis:249 P.jiroveci:39

F6XCJ0              	100.00%		L0P720              	100.00%
Bootstrap support for F6XCJ0 as seed ortholog is 100%.
Bootstrap support for L0P720 as seed ortholog is 94%.

Group of orthologs #525. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 P.jiroveci:248

F6TIM2              	100.00%		L0P914              	100.00%
Bootstrap support for F6TIM2 as seed ortholog is 100%.
Bootstrap support for L0P914 as seed ortholog is 100%.

Group of orthologs #526. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 P.jiroveci:248

F6URQ9              	100.00%		L0PDL6              	100.00%
Bootstrap support for F6URQ9 as seed ortholog is 100%.
Bootstrap support for L0PDL6 as seed ortholog is 100%.

Group of orthologs #527. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.jiroveci:147

F6VEB2              	100.00%		L0PFK0              	100.00%
Bootstrap support for F6VEB2 as seed ortholog is 99%.
Bootstrap support for L0PFK0 as seed ortholog is 99%.

Group of orthologs #528. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 P.jiroveci:168

F6QDG1              	100.00%		L0P895              	100.00%
Bootstrap support for F6QDG1 as seed ortholog is 100%.
Bootstrap support for L0P895 as seed ortholog is 99%.

Group of orthologs #529. Best score 246 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 P.jiroveci:246

F6XUX1              	100.00%		L0PE74              	100.00%
Bootstrap support for F6XUX1 as seed ortholog is 100%.
Bootstrap support for L0PE74 as seed ortholog is 100%.

Group of orthologs #530. Best score 246 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 P.jiroveci:246

F7A5L4              	100.00%		L0P870              	100.00%
Bootstrap support for F7A5L4 as seed ortholog is 100%.
Bootstrap support for L0P870 as seed ortholog is 100%.

Group of orthologs #531. Best score 246 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 P.jiroveci:246

F6Z0U1              	100.00%		L0PIV4              	100.00%
Bootstrap support for F6Z0U1 as seed ortholog is 100%.
Bootstrap support for L0PIV4 as seed ortholog is 100%.

Group of orthologs #532. Best score 245 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 P.jiroveci:245

F6SM85              	100.00%		L0P962              	100.00%
Bootstrap support for F6SM85 as seed ortholog is 97%.
Bootstrap support for L0P962 as seed ortholog is 100%.

Group of orthologs #533. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:244 P.jiroveci:244

F6SEU1              	100.00%		L0PF74              	100.00%
Bootstrap support for F6SEU1 as seed ortholog is 100%.
Bootstrap support for L0PF74 as seed ortholog is 100%.

Group of orthologs #534. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:244 P.jiroveci:244

F6WBE1              	100.00%		L0P9T5              	100.00%
Bootstrap support for F6WBE1 as seed ortholog is 100%.
Bootstrap support for L0P9T5 as seed ortholog is 100%.

Group of orthologs #535. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:243 P.jiroveci:243

F6QS75              	100.00%		L0PFJ6              	100.00%
Bootstrap support for F6QS75 as seed ortholog is 100%.
Bootstrap support for L0PFJ6 as seed ortholog is 100%.

Group of orthologs #536. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:21 P.jiroveci:243

F6UK82              	100.00%		L0PB24              	100.00%
Bootstrap support for F6UK82 as seed ortholog is 72%.
Alternative seed ortholog is F6X5I5 (21 bits away from this cluster)
Bootstrap support for L0PB24 as seed ortholog is 100%.

Group of orthologs #537. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 P.jiroveci:242

F6WBA4              	100.00%		L0PGQ4              	100.00%
Bootstrap support for F6WBA4 as seed ortholog is 100%.
Bootstrap support for L0PGQ4 as seed ortholog is 100%.

Group of orthologs #538. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:189 P.jiroveci:176

F7AIP5              	100.00%		L0PCG1              	100.00%
Bootstrap support for F7AIP5 as seed ortholog is 99%.
Bootstrap support for L0PCG1 as seed ortholog is 99%.

Group of orthologs #539. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 P.jiroveci:62

Q967X2              	100.00%		L0PAQ7              	100.00%
Bootstrap support for Q967X2 as seed ortholog is 100%.
Bootstrap support for L0PAQ7 as seed ortholog is 98%.

Group of orthologs #540. Best score 241 bits
Score difference with first non-orthologous sequence - C.intestinalis:241 P.jiroveci:241

F6S360              	100.00%		L0PBP9              	100.00%
Bootstrap support for F6S360 as seed ortholog is 100%.
Bootstrap support for L0PBP9 as seed ortholog is 100%.

Group of orthologs #541. Best score 241 bits
Score difference with first non-orthologous sequence - C.intestinalis:241 P.jiroveci:241

F6RKQ2              	100.00%		L0PG93              	100.00%
Bootstrap support for F6RKQ2 as seed ortholog is 100%.
Bootstrap support for L0PG93 as seed ortholog is 100%.

Group of orthologs #542. Best score 240 bits
Score difference with first non-orthologous sequence - C.intestinalis:240 P.jiroveci:240

F6SNL0              	100.00%		L0PAM2              	100.00%
Bootstrap support for F6SNL0 as seed ortholog is 100%.
Bootstrap support for L0PAM2 as seed ortholog is 100%.

Group of orthologs #543. Best score 240 bits
Score difference with first non-orthologous sequence - C.intestinalis:240 P.jiroveci:240

I6L7H7              	100.00%		L0P7Q3              	100.00%
Bootstrap support for I6L7H7 as seed ortholog is 100%.
Bootstrap support for L0P7Q3 as seed ortholog is 100%.

Group of orthologs #544. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:239

F6Y5B7              	100.00%		L0P876              	100.00%
F6Y615              	16.22%		
F6Y4V4              	14.86%		
Bootstrap support for F6Y5B7 as seed ortholog is 98%.
Bootstrap support for L0P876 as seed ortholog is 100%.

Group of orthologs #545. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:239 P.jiroveci:239

F6UJI9              	100.00%		L0PD38              	100.00%
Bootstrap support for F6UJI9 as seed ortholog is 100%.
Bootstrap support for L0PD38 as seed ortholog is 100%.

Group of orthologs #546. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 P.jiroveci:238

F6R4F4              	100.00%		L0PFZ1              	100.00%
Bootstrap support for F6R4F4 as seed ortholog is 99%.
Bootstrap support for L0PFZ1 as seed ortholog is 100%.

Group of orthologs #547. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 P.jiroveci:120

F6ZRB6              	100.00%		L0P9G1              	100.00%
Bootstrap support for F6ZRB6 as seed ortholog is 100%.
Bootstrap support for L0P9G1 as seed ortholog is 99%.

Group of orthologs #548. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 P.jiroveci:238

F7AH61              	100.00%		L0PDH2              	100.00%
Bootstrap support for F7AH61 as seed ortholog is 100%.
Bootstrap support for L0PDH2 as seed ortholog is 100%.

Group of orthologs #549. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 P.jiroveci:238

F7B391              	100.00%		L0PD58              	100.00%
Bootstrap support for F7B391 as seed ortholog is 100%.
Bootstrap support for L0PD58 as seed ortholog is 100%.

Group of orthologs #550. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:237

F6XWG9              	100.00%		L0PA17              	100.00%
Bootstrap support for F6XWG9 as seed ortholog is 99%.
Bootstrap support for L0PA17 as seed ortholog is 100%.

Group of orthologs #551. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:237

F6XGG4              	100.00%		L0PEX1              	100.00%
Bootstrap support for F6XGG4 as seed ortholog is 99%.
Bootstrap support for L0PEX1 as seed ortholog is 100%.

Group of orthologs #552. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 P.jiroveci:128

F6YI64              	100.00%		L0PE17              	100.00%
Bootstrap support for F6YI64 as seed ortholog is 100%.
Bootstrap support for L0PE17 as seed ortholog is 100%.

Group of orthologs #553. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:236 P.jiroveci:236

F6YDG1              	100.00%		L0P9S4              	100.00%
Bootstrap support for F6YDG1 as seed ortholog is 100%.
Bootstrap support for L0P9S4 as seed ortholog is 100%.

Group of orthologs #554. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 P.jiroveci:236

F6ZVR2              	100.00%		L0PAG1              	100.00%
Bootstrap support for F6ZVR2 as seed ortholog is 99%.
Bootstrap support for L0PAG1 as seed ortholog is 100%.

Group of orthologs #555. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:236 P.jiroveci:236

F7BDV2              	100.00%		L0P6P2              	100.00%
Bootstrap support for F7BDV2 as seed ortholog is 100%.
Bootstrap support for L0P6P2 as seed ortholog is 100%.

Group of orthologs #556. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:236 P.jiroveci:236

F6ZGD4              	100.00%		L0PI09              	100.00%
Bootstrap support for F6ZGD4 as seed ortholog is 100%.
Bootstrap support for L0PI09 as seed ortholog is 100%.

Group of orthologs #557. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 P.jiroveci:235

F6WNN3              	100.00%		L0PID4              	100.00%
                    	       		L0PGF7              	34.33%
Bootstrap support for F6WNN3 as seed ortholog is 100%.
Bootstrap support for L0PID4 as seed ortholog is 100%.

Group of orthologs #558. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 P.jiroveci:235

H2XW54              	100.00%		L0PH54              	100.00%
Bootstrap support for H2XW54 as seed ortholog is 100%.
Bootstrap support for L0PH54 as seed ortholog is 100%.

Group of orthologs #559. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 P.jiroveci:235

H2Y0S6              	100.00%		L0PDP2              	100.00%
Bootstrap support for H2Y0S6 as seed ortholog is 100%.
Bootstrap support for L0PDP2 as seed ortholog is 100%.

Group of orthologs #560. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 P.jiroveci:234

F6SF69              	100.00%		L0PAR5              	100.00%
Bootstrap support for F6SF69 as seed ortholog is 100%.
Bootstrap support for L0PAR5 as seed ortholog is 100%.

Group of orthologs #561. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 P.jiroveci:234

F6V8N9              	100.00%		L0PDJ2              	100.00%
Bootstrap support for F6V8N9 as seed ortholog is 100%.
Bootstrap support for L0PDJ2 as seed ortholog is 100%.

Group of orthologs #562. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 P.jiroveci:234

F7AB24              	100.00%		L0PGG0              	100.00%
Bootstrap support for F7AB24 as seed ortholog is 100%.
Bootstrap support for L0PGG0 as seed ortholog is 100%.

Group of orthologs #563. Best score 233 bits
Score difference with first non-orthologous sequence - C.intestinalis:233 P.jiroveci:233

F6UNT7              	100.00%		L0P9Q8              	100.00%
Bootstrap support for F6UNT7 as seed ortholog is 100%.
Bootstrap support for L0P9Q8 as seed ortholog is 100%.

Group of orthologs #564. Best score 233 bits
Score difference with first non-orthologous sequence - C.intestinalis:233 P.jiroveci:233

F6YI87              	100.00%		L0P9R7              	100.00%
Bootstrap support for F6YI87 as seed ortholog is 100%.
Bootstrap support for L0P9R7 as seed ortholog is 100%.

Group of orthologs #565. Best score 232 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 P.jiroveci:232

H2Y279              	100.00%		L0PAD9              	100.00%
F6SGU7              	8.48%		
Bootstrap support for H2Y279 as seed ortholog is 100%.
Bootstrap support for L0PAD9 as seed ortholog is 100%.

Group of orthologs #566. Best score 232 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 P.jiroveci:232

H2XLC1              	100.00%		L0PEC6              	100.00%
Bootstrap support for H2XLC1 as seed ortholog is 100%.
Bootstrap support for L0PEC6 as seed ortholog is 100%.

Group of orthologs #567. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 P.jiroveci:230

F6TBF9              	100.00%		L0PCC1              	100.00%
Bootstrap support for F6TBF9 as seed ortholog is 100%.
Bootstrap support for L0PCC1 as seed ortholog is 100%.

Group of orthologs #568. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 P.jiroveci:230

F6UGF1              	100.00%		L0PF99              	100.00%
Bootstrap support for F6UGF1 as seed ortholog is 99%.
Bootstrap support for L0PF99 as seed ortholog is 100%.

Group of orthologs #569. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 P.jiroveci:230

F6YCP6              	100.00%		L0P834              	100.00%
Bootstrap support for F6YCP6 as seed ortholog is 100%.
Bootstrap support for L0P834 as seed ortholog is 100%.

Group of orthologs #570. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 P.jiroveci:230

F7BI62              	100.00%		L0PBD5              	100.00%
Bootstrap support for F7BI62 as seed ortholog is 100%.
Bootstrap support for L0PBD5 as seed ortholog is 100%.

Group of orthologs #571. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.jiroveci:230

H2XKK7              	100.00%		L0PCY2              	100.00%
Bootstrap support for H2XKK7 as seed ortholog is 96%.
Bootstrap support for L0PCY2 as seed ortholog is 100%.

Group of orthologs #572. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 P.jiroveci:161

F6SK29              	100.00%		L0PFY7              	100.00%
Bootstrap support for F6SK29 as seed ortholog is 100%.
Bootstrap support for L0PFY7 as seed ortholog is 100%.

Group of orthologs #573. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 P.jiroveci:229

F6WJQ9              	100.00%		L0PB61              	100.00%
Bootstrap support for F6WJQ9 as seed ortholog is 100%.
Bootstrap support for L0PB61 as seed ortholog is 100%.

Group of orthologs #574. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 P.jiroveci:229

F7AEV2              	100.00%		L0P9N2              	100.00%
Bootstrap support for F7AEV2 as seed ortholog is 100%.
Bootstrap support for L0P9N2 as seed ortholog is 100%.

Group of orthologs #575. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 P.jiroveci:228

F6WJQ0              	100.00%		L0PAG0              	100.00%
Bootstrap support for F6WJQ0 as seed ortholog is 100%.
Bootstrap support for L0PAG0 as seed ortholog is 100%.

Group of orthologs #576. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 P.jiroveci:228

H2XMB6              	100.00%		L0P9F9              	100.00%
Bootstrap support for H2XMB6 as seed ortholog is 100%.
Bootstrap support for L0P9F9 as seed ortholog is 100%.

Group of orthologs #577. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 P.jiroveci:228

H2Y0A5              	100.00%		L0P7H2              	100.00%
Bootstrap support for H2Y0A5 as seed ortholog is 100%.
Bootstrap support for L0P7H2 as seed ortholog is 100%.

Group of orthologs #578. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 P.jiroveci:227

F6W446              	100.00%		L0PH33              	100.00%
F7BGT4              	19.21%		
F6PPP8              	17.72%		
Bootstrap support for F6W446 as seed ortholog is 100%.
Bootstrap support for L0PH33 as seed ortholog is 100%.

Group of orthologs #579. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:227

H2XNI7              	100.00%		L0P858              	100.00%
                    	       		L0PDX5              	68.52%
Bootstrap support for H2XNI7 as seed ortholog is 99%.
Bootstrap support for L0P858 as seed ortholog is 100%.

Group of orthologs #580. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 P.jiroveci:227

F6TX35              	100.00%		L0PBC7              	100.00%
Bootstrap support for F6TX35 as seed ortholog is 100%.
Bootstrap support for L0PBC7 as seed ortholog is 100%.

Group of orthologs #581. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 P.jiroveci:227

F6UP49              	100.00%		L0PEB1              	100.00%
Bootstrap support for F6UP49 as seed ortholog is 100%.
Bootstrap support for L0PEB1 as seed ortholog is 100%.

Group of orthologs #582. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 P.jiroveci:11

F6WZS8              	100.00%		L0PB48              	100.00%
Bootstrap support for F6WZS8 as seed ortholog is 100%.
Bootstrap support for L0PB48 as seed ortholog is 53%.
Alternative seed ortholog is L0PD43 (11 bits away from this cluster)

Group of orthologs #583. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 P.jiroveci:227

F6ZIP1              	100.00%		L0PDN4              	100.00%
Bootstrap support for F6ZIP1 as seed ortholog is 96%.
Bootstrap support for L0PDN4 as seed ortholog is 100%.

Group of orthologs #584. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:35 P.jiroveci:143

F7AWC6              	100.00%		L0PBM0              	100.00%
Bootstrap support for F7AWC6 as seed ortholog is 83%.
Bootstrap support for L0PBM0 as seed ortholog is 99%.

Group of orthologs #585. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:227

H2XZQ0              	100.00%		L0P9I3              	100.00%
Bootstrap support for H2XZQ0 as seed ortholog is 100%.
Bootstrap support for L0P9I3 as seed ortholog is 100%.

Group of orthologs #586. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 P.jiroveci:227

H2Y2G1              	100.00%		L0PH55              	100.00%
Bootstrap support for H2Y2G1 as seed ortholog is 100%.
Bootstrap support for L0PH55 as seed ortholog is 100%.

Group of orthologs #587. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 P.jiroveci:79

Q7YT82              	100.00%		L0PGE5              	100.00%
Bootstrap support for Q7YT82 as seed ortholog is 99%.
Bootstrap support for L0PGE5 as seed ortholog is 99%.

Group of orthologs #588. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 P.jiroveci:224

F6VJT7              	100.00%		L0PE53              	100.00%
F7BLJ0              	33.13%		
F6SF16              	16.87%		
Bootstrap support for F6VJT7 as seed ortholog is 100%.
Bootstrap support for L0PE53 as seed ortholog is 100%.

Group of orthologs #589. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 P.jiroveci:224

F7BDE0              	100.00%		L0PCR8              	100.00%
                    	       		L0PH75              	91.21%
Bootstrap support for F7BDE0 as seed ortholog is 100%.
Bootstrap support for L0PCR8 as seed ortholog is 100%.

Group of orthologs #590. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 P.jiroveci:224

H2XU57              	100.00%		L0PBS5              	100.00%
Q8I7D6              	97.40%		
Bootstrap support for H2XU57 as seed ortholog is 100%.
Bootstrap support for L0PBS5 as seed ortholog is 100%.

Group of orthologs #591. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 P.jiroveci:224

F6SCN2              	100.00%		L0PE61              	100.00%
Bootstrap support for F6SCN2 as seed ortholog is 100%.
Bootstrap support for L0PE61 as seed ortholog is 100%.

Group of orthologs #592. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 P.jiroveci:224

H2XSL3              	100.00%		L0PBD0              	100.00%
Bootstrap support for H2XSL3 as seed ortholog is 100%.
Bootstrap support for L0PBD0 as seed ortholog is 100%.

Group of orthologs #593. Best score 223 bits
Score difference with first non-orthologous sequence - C.intestinalis:223 P.jiroveci:223

K9J6P5              	100.00%		L0PG10              	100.00%
F7AYD9              	73.14%		
F6ZVC8              	11.97%		
Bootstrap support for K9J6P5 as seed ortholog is 100%.
Bootstrap support for L0PG10 as seed ortholog is 100%.

Group of orthologs #594. Best score 223 bits
Score difference with first non-orthologous sequence - C.intestinalis:223 P.jiroveci:223

F6YNG6              	100.00%		L0PG68              	100.00%
Bootstrap support for F6YNG6 as seed ortholog is 100%.
Bootstrap support for L0PG68 as seed ortholog is 100%.

Group of orthologs #595. Best score 222 bits
Score difference with first non-orthologous sequence - C.intestinalis:222 P.jiroveci:222

F6UJM5              	100.00%		L0PCB3              	100.00%
Bootstrap support for F6UJM5 as seed ortholog is 100%.
Bootstrap support for L0PCB3 as seed ortholog is 100%.

Group of orthologs #596. Best score 222 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 P.jiroveci:222

F6TMT5              	100.00%		L0PHH9              	100.00%
Bootstrap support for F6TMT5 as seed ortholog is 99%.
Bootstrap support for L0PHH9 as seed ortholog is 100%.

Group of orthologs #597. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 P.jiroveci:221

F7B1Y1              	100.00%		L0PHL1              	100.00%
Q8I7D5              	90.28%		
Bootstrap support for F7B1Y1 as seed ortholog is 100%.
Bootstrap support for L0PHL1 as seed ortholog is 100%.

Group of orthologs #598. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 P.jiroveci:131

F7A9Y8              	100.00%		L0PFE3              	100.00%
Bootstrap support for F7A9Y8 as seed ortholog is 99%.
Bootstrap support for L0PFE3 as seed ortholog is 99%.

Group of orthologs #599. Best score 220 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 P.jiroveci:220

F6PSK8              	100.00%		L0PD82              	100.00%
                    	       		L0P6Q8              	27.93%
Bootstrap support for F6PSK8 as seed ortholog is 100%.
Bootstrap support for L0PD82 as seed ortholog is 100%.

Group of orthologs #600. Best score 220 bits
Score difference with first non-orthologous sequence - C.intestinalis:220 P.jiroveci:220

F6WUH0              	100.00%		L0PBA4              	100.00%
Bootstrap support for F6WUH0 as seed ortholog is 100%.
Bootstrap support for L0PBA4 as seed ortholog is 100%.

Group of orthologs #601. Best score 220 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.jiroveci:164

F6XCQ7              	100.00%		L0PHW8              	100.00%
Bootstrap support for F6XCQ7 as seed ortholog is 99%.
Bootstrap support for L0PHW8 as seed ortholog is 100%.

Group of orthologs #602. Best score 219 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 P.jiroveci:105

F6RUQ3              	100.00%		L0PBV6              	100.00%
Bootstrap support for F6RUQ3 as seed ortholog is 100%.
Bootstrap support for L0PBV6 as seed ortholog is 99%.

Group of orthologs #603. Best score 219 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 P.jiroveci:219

F6R4T5              	100.00%		L0PDT4              	100.00%
Bootstrap support for F6R4T5 as seed ortholog is 100%.
Bootstrap support for L0PDT4 as seed ortholog is 100%.

Group of orthologs #604. Best score 219 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 P.jiroveci:219

F6TB52              	100.00%		L0PGY0              	100.00%
Bootstrap support for F6TB52 as seed ortholog is 100%.
Bootstrap support for L0PGY0 as seed ortholog is 100%.

Group of orthologs #605. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:217

F6Y1R8              	100.00%		L0P9G0              	100.00%
F6ZK74              	16.63%		
F7A0G1              	14.90%		
F6S6B2              	11.59%		
F6SF88              	6.62%		
F6SAN3              	6.55%		
Bootstrap support for F6Y1R8 as seed ortholog is 100%.
Bootstrap support for L0P9G0 as seed ortholog is 100%.

Group of orthologs #606. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:217

F7B670              	100.00%		L0PA92              	100.00%
                    	       		L0P8X8              	41.42%
Bootstrap support for F7B670 as seed ortholog is 100%.
Bootstrap support for L0PA92 as seed ortholog is 100%.

Group of orthologs #607. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:217

F6PQL4              	100.00%		L0P9Y7              	100.00%
Bootstrap support for F6PQL4 as seed ortholog is 100%.
Bootstrap support for L0P9Y7 as seed ortholog is 100%.

Group of orthologs #608. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.jiroveci:217

F6QEH2              	100.00%		L0PAF0              	100.00%
Bootstrap support for F6QEH2 as seed ortholog is 99%.
Bootstrap support for L0PAF0 as seed ortholog is 100%.

Group of orthologs #609. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:217

F6QWW6              	100.00%		L0PFR9              	100.00%
Bootstrap support for F6QWW6 as seed ortholog is 100%.
Bootstrap support for L0PFR9 as seed ortholog is 100%.

Group of orthologs #610. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 P.jiroveci:217

F6V6R4              	100.00%		L0PAJ0              	100.00%
Bootstrap support for F6V6R4 as seed ortholog is 100%.
Bootstrap support for L0PAJ0 as seed ortholog is 100%.

Group of orthologs #611. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 P.jiroveci:175

F6QRJ2              	100.00%		L0PAW4              	100.00%
Bootstrap support for F6QRJ2 as seed ortholog is 99%.
Bootstrap support for L0PAW4 as seed ortholog is 100%.

Group of orthologs #612. Best score 215 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 P.jiroveci:215

F6QS20              	100.00%		L0P8K8              	100.00%
Bootstrap support for F6QS20 as seed ortholog is 100%.
Bootstrap support for L0P8K8 as seed ortholog is 100%.

Group of orthologs #613. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 P.jiroveci:214

F6TL19              	100.00%		L0PA36              	100.00%
Bootstrap support for F6TL19 as seed ortholog is 100%.
Bootstrap support for L0PA36 as seed ortholog is 100%.

Group of orthologs #614. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 P.jiroveci:214

F6VH72              	100.00%		L0PET8              	100.00%
Bootstrap support for F6VH72 as seed ortholog is 100%.
Bootstrap support for L0PET8 as seed ortholog is 100%.

Group of orthologs #615. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:81

F7AFR6              	100.00%		L0PG51              	100.00%
Bootstrap support for F7AFR6 as seed ortholog is 97%.
Bootstrap support for L0PG51 as seed ortholog is 96%.

Group of orthologs #616. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 P.jiroveci:214

H2XUS4              	100.00%		L0PFP0              	100.00%
Bootstrap support for H2XUS4 as seed ortholog is 100%.
Bootstrap support for L0PFP0 as seed ortholog is 100%.

Group of orthologs #617. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 P.jiroveci:213

F6RAN6              	100.00%		L0PBT0              	100.00%
Bootstrap support for F6RAN6 as seed ortholog is 100%.
Bootstrap support for L0PBT0 as seed ortholog is 100%.

Group of orthologs #618. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 P.jiroveci:213

F6TJ64              	100.00%		L0PCU0              	100.00%
Bootstrap support for F6TJ64 as seed ortholog is 100%.
Bootstrap support for L0PCU0 as seed ortholog is 100%.

Group of orthologs #619. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 P.jiroveci:213

F6YHB0              	100.00%		L0P9M9              	100.00%
Bootstrap support for F6YHB0 as seed ortholog is 100%.
Bootstrap support for L0P9M9 as seed ortholog is 100%.

Group of orthologs #620. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 P.jiroveci:213

H2XVM3              	100.00%		L0PET6              	100.00%
Bootstrap support for H2XVM3 as seed ortholog is 100%.
Bootstrap support for L0PET6 as seed ortholog is 100%.

Group of orthologs #621. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.jiroveci:212

F6YG27              	100.00%		L0P848              	100.00%
                    	       		L0P867              	89.83%
Bootstrap support for F6YG27 as seed ortholog is 97%.
Bootstrap support for L0P848 as seed ortholog is 100%.

Group of orthologs #622. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 P.jiroveci:212

F6UK15              	100.00%		L0PI61              	100.00%
                    	       		L0PA50              	21.08%
Bootstrap support for F6UK15 as seed ortholog is 100%.
Bootstrap support for L0PI61 as seed ortholog is 100%.

Group of orthologs #623. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.jiroveci:212

F6SSP8              	100.00%		L0PDB9              	100.00%
Bootstrap support for F6SSP8 as seed ortholog is 99%.
Bootstrap support for L0PDB9 as seed ortholog is 100%.

Group of orthologs #624. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 P.jiroveci:211

F6QY42              	100.00%		L0PAL5              	100.00%
Bootstrap support for F6QY42 as seed ortholog is 100%.
Bootstrap support for L0PAL5 as seed ortholog is 100%.

Group of orthologs #625. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 P.jiroveci:211

F6UA65              	100.00%		L0P896              	100.00%
Bootstrap support for F6UA65 as seed ortholog is 100%.
Bootstrap support for L0P896 as seed ortholog is 100%.

Group of orthologs #626. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 P.jiroveci:211

F6T7Y6              	100.00%		L0PD63              	100.00%
Bootstrap support for F6T7Y6 as seed ortholog is 100%.
Bootstrap support for L0PD63 as seed ortholog is 100%.

Group of orthologs #627. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 P.jiroveci:211

F6TLE4              	100.00%		L0PEW5              	100.00%
Bootstrap support for F6TLE4 as seed ortholog is 100%.
Bootstrap support for L0PEW5 as seed ortholog is 100%.

Group of orthologs #628. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 P.jiroveci:103

F6T2C1              	100.00%		L0PFN2              	100.00%
F6T2A6              	87.50%		
Bootstrap support for F6T2C1 as seed ortholog is 100%.
Bootstrap support for L0PFN2 as seed ortholog is 100%.

Group of orthologs #629. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 P.jiroveci:210

F6Q4K7              	100.00%		L0PC53              	100.00%
Bootstrap support for F6Q4K7 as seed ortholog is 100%.
Bootstrap support for L0PC53 as seed ortholog is 100%.

Group of orthologs #630. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 P.jiroveci:210

F6Q0S7              	100.00%		L0PG81              	100.00%
Bootstrap support for F6Q0S7 as seed ortholog is 100%.
Bootstrap support for L0PG81 as seed ortholog is 100%.

Group of orthologs #631. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 P.jiroveci:210

F6S0S0              	100.00%		L0PEN7              	100.00%
Bootstrap support for F6S0S0 as seed ortholog is 100%.
Bootstrap support for L0PEN7 as seed ortholog is 100%.

Group of orthologs #632. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 P.jiroveci:210

F6UMM5              	100.00%		L0P9U1              	100.00%
Bootstrap support for F6UMM5 as seed ortholog is 100%.
Bootstrap support for L0P9U1 as seed ortholog is 100%.

Group of orthologs #633. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 P.jiroveci:210

F6Y6W3              	100.00%		L0PGE7              	100.00%
Bootstrap support for F6Y6W3 as seed ortholog is 100%.
Bootstrap support for L0PGE7 as seed ortholog is 100%.

Group of orthologs #634. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 P.jiroveci:210

F7AJZ2              	100.00%		L0PGD6              	100.00%
Bootstrap support for F7AJZ2 as seed ortholog is 100%.
Bootstrap support for L0PGD6 as seed ortholog is 100%.

Group of orthologs #635. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 P.jiroveci:209

F6Q7P2              	100.00%		L0PBL5              	100.00%
Bootstrap support for F6Q7P2 as seed ortholog is 99%.
Bootstrap support for L0PBL5 as seed ortholog is 100%.

Group of orthologs #636. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 P.jiroveci:209

F7A1T4              	100.00%		L0PCK9              	100.00%
Bootstrap support for F7A1T4 as seed ortholog is 100%.
Bootstrap support for L0PCK9 as seed ortholog is 100%.

Group of orthologs #637. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 P.jiroveci:209

H2XWD3              	100.00%		L0PDX6              	100.00%
Bootstrap support for H2XWD3 as seed ortholog is 100%.
Bootstrap support for L0PDX6 as seed ortholog is 100%.

Group of orthologs #638. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 P.jiroveci:209

Q4H3E2              	100.00%		L0PCZ4              	100.00%
Bootstrap support for Q4H3E2 as seed ortholog is 100%.
Bootstrap support for L0PCZ4 as seed ortholog is 100%.

Group of orthologs #639. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 P.jiroveci:208

F6R7I5              	100.00%		L0P7R5              	100.00%
Bootstrap support for F6R7I5 as seed ortholog is 100%.
Bootstrap support for L0P7R5 as seed ortholog is 100%.

Group of orthologs #640. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.jiroveci:112

F6SJF0              	100.00%		L0PA05              	100.00%
Bootstrap support for F6SJF0 as seed ortholog is 98%.
Bootstrap support for L0PA05 as seed ortholog is 99%.

Group of orthologs #641. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 P.jiroveci:208

F6UMT8              	100.00%		L0PA23              	100.00%
Bootstrap support for F6UMT8 as seed ortholog is 100%.
Bootstrap support for L0PA23 as seed ortholog is 100%.

Group of orthologs #642. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 P.jiroveci:124

F6VKA0              	100.00%		L0P863              	100.00%
Bootstrap support for F6VKA0 as seed ortholog is 99%.
Bootstrap support for L0P863 as seed ortholog is 99%.

Group of orthologs #643. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 P.jiroveci:208

F7B2L3              	100.00%		L0PAE8              	100.00%
Bootstrap support for F7B2L3 as seed ortholog is 100%.
Bootstrap support for L0PAE8 as seed ortholog is 100%.

Group of orthologs #644. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 P.jiroveci:208

F6ZCL3              	100.00%		L0PFW4              	100.00%
Bootstrap support for F6ZCL3 as seed ortholog is 100%.
Bootstrap support for L0PFW4 as seed ortholog is 100%.

Group of orthologs #645. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.jiroveci:13

F6Z9D3              	100.00%		L0PCN5              	100.00%
F7B9D6              	17.41%		L0P7B6              	92.64%
F7ATZ1              	12.28%		
F6SUL1              	10.04%		
Bootstrap support for F6Z9D3 as seed ortholog is 93%.
Bootstrap support for L0PCN5 as seed ortholog is 62%.
Alternative seed ortholog is L0PGT4 (13 bits away from this cluster)

Group of orthologs #646. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 P.jiroveci:207

F6Z781              	100.00%		L0P702              	100.00%
Bootstrap support for F6Z781 as seed ortholog is 100%.
Bootstrap support for L0P702 as seed ortholog is 100%.

Group of orthologs #647. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 P.jiroveci:205

F6YMT8              	100.00%		L0P9J6              	100.00%
                    	       		L0PH67              	87.56%
Bootstrap support for F6YMT8 as seed ortholog is 100%.
Bootstrap support for L0P9J6 as seed ortholog is 100%.

Group of orthologs #648. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 P.jiroveci:205

F6SSU2              	100.00%		L0PFU0              	100.00%
Bootstrap support for F6SSU2 as seed ortholog is 100%.
Bootstrap support for L0PFU0 as seed ortholog is 100%.

Group of orthologs #649. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 P.jiroveci:205

F6VIA9              	100.00%		L0PA86              	100.00%
Bootstrap support for F6VIA9 as seed ortholog is 100%.
Bootstrap support for L0PA86 as seed ortholog is 100%.

Group of orthologs #650. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 P.jiroveci:205

F6XWN6              	100.00%		L0PG39              	100.00%
Bootstrap support for F6XWN6 as seed ortholog is 100%.
Bootstrap support for L0PG39 as seed ortholog is 100%.

Group of orthologs #651. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 P.jiroveci:205

F7BBJ6              	100.00%		L0PHN0              	100.00%
Bootstrap support for F7BBJ6 as seed ortholog is 99%.
Bootstrap support for L0PHN0 as seed ortholog is 100%.

Group of orthologs #652. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:204 P.jiroveci:204

F6XEW4              	100.00%		L0PCF4              	100.00%
F6XEX3              	43.58%		L0P926              	61.19%
Bootstrap support for F6XEW4 as seed ortholog is 100%.
Bootstrap support for L0PCF4 as seed ortholog is 100%.

Group of orthologs #653. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:204 P.jiroveci:204

F6XVD3              	100.00%		L0P7W4              	100.00%
Bootstrap support for F6XVD3 as seed ortholog is 100%.
Bootstrap support for L0P7W4 as seed ortholog is 100%.

Group of orthologs #654. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:204 P.jiroveci:204

F7BDS7              	100.00%		L0PBZ1              	100.00%
Bootstrap support for F7BDS7 as seed ortholog is 100%.
Bootstrap support for L0PBZ1 as seed ortholog is 100%.

Group of orthologs #655. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:204 P.jiroveci:204

H2XW76              	100.00%		L0P705              	100.00%
Bootstrap support for H2XW76 as seed ortholog is 100%.
Bootstrap support for L0P705 as seed ortholog is 100%.

Group of orthologs #656. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.jiroveci:68

F6PJL4              	100.00%		L0PCJ7              	100.00%
F6QMD4              	7.01%		
F6R6I1              	6.58%		
F6VXQ6              	5.52%		
Bootstrap support for F6PJL4 as seed ortholog is 96%.
Bootstrap support for L0PCJ7 as seed ortholog is 97%.

Group of orthologs #657. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 P.jiroveci:202

F6ZA03              	100.00%		L0PBL8              	100.00%
                    	       		L0PDU3              	68.08%
Bootstrap support for F6ZA03 as seed ortholog is 100%.
Bootstrap support for L0PBL8 as seed ortholog is 100%.

Group of orthologs #658. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:202

F6TJ76              	100.00%		L0PB84              	100.00%
Bootstrap support for F6TJ76 as seed ortholog is 100%.
Bootstrap support for L0PB84 as seed ortholog is 100%.

Group of orthologs #659. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 P.jiroveci:202

F6XBT4              	100.00%		L0PC18              	100.00%
Bootstrap support for F6XBT4 as seed ortholog is 100%.
Bootstrap support for L0PC18 as seed ortholog is 100%.

Group of orthologs #660. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 P.jiroveci:202

F7A955              	100.00%		L0P839              	100.00%
Bootstrap support for F7A955 as seed ortholog is 100%.
Bootstrap support for L0P839 as seed ortholog is 100%.

Group of orthologs #661. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 P.jiroveci:202

F7AP04              	100.00%		L0P9K2              	100.00%
Bootstrap support for F7AP04 as seed ortholog is 100%.
Bootstrap support for L0P9K2 as seed ortholog is 100%.

Group of orthologs #662. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:201

H2XZ54              	100.00%		L0PEQ4              	100.00%
F6Y5Q3              	17.54%		
Bootstrap support for H2XZ54 as seed ortholog is 98%.
Bootstrap support for L0PEQ4 as seed ortholog is 100%.

Group of orthologs #663. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 P.jiroveci:201

F6YZ22              	100.00%		L0PAB3              	100.00%
Bootstrap support for F6YZ22 as seed ortholog is 100%.
Bootstrap support for L0PAB3 as seed ortholog is 100%.

Group of orthologs #664. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.jiroveci:82

H2XRD4              	100.00%		L0PGT3              	100.00%
Bootstrap support for H2XRD4 as seed ortholog is 98%.
Bootstrap support for L0PGT3 as seed ortholog is 99%.

Group of orthologs #665. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 P.jiroveci:200

F6RGI4              	100.00%		L0PBZ6              	100.00%
Bootstrap support for F6RGI4 as seed ortholog is 100%.
Bootstrap support for L0PBZ6 as seed ortholog is 100%.

Group of orthologs #666. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:200

F6R6J0              	100.00%		L0PGD9              	100.00%
Bootstrap support for F6R6J0 as seed ortholog is 99%.
Bootstrap support for L0PGD9 as seed ortholog is 100%.

Group of orthologs #667. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 P.jiroveci:200

F6SZQ5              	100.00%		L0PDJ4              	100.00%
Bootstrap support for F6SZQ5 as seed ortholog is 100%.
Bootstrap support for L0PDJ4 as seed ortholog is 100%.

Group of orthologs #668. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:24 P.jiroveci:200

F6VKM8              	100.00%		L0P8Q5              	100.00%
Bootstrap support for F6VKM8 as seed ortholog is 63%.
Alternative seed ortholog is F6ZIM0 (24 bits away from this cluster)
Bootstrap support for L0P8Q5 as seed ortholog is 100%.

Group of orthologs #669. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 P.jiroveci:200

F6XVH4              	100.00%		L0PA65              	100.00%
Bootstrap support for F6XVH4 as seed ortholog is 100%.
Bootstrap support for L0PA65 as seed ortholog is 100%.

Group of orthologs #670. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 P.jiroveci:200

F7ASH4              	100.00%		L0PCJ8              	100.00%
Bootstrap support for F7ASH4 as seed ortholog is 100%.
Bootstrap support for L0PCJ8 as seed ortholog is 100%.

Group of orthologs #671. Best score 199 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 P.jiroveci:199

H2XQ34              	100.00%		L0PDL5              	100.00%
Bootstrap support for H2XQ34 as seed ortholog is 100%.
Bootstrap support for L0PDL5 as seed ortholog is 100%.

Group of orthologs #672. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.jiroveci:198

F6Q512              	100.00%		L0P8C3              	100.00%
Bootstrap support for F6Q512 as seed ortholog is 100%.
Bootstrap support for L0P8C3 as seed ortholog is 100%.

Group of orthologs #673. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.jiroveci:198

F6Q2U2              	100.00%		L0PC50              	100.00%
Bootstrap support for F6Q2U2 as seed ortholog is 100%.
Bootstrap support for L0PC50 as seed ortholog is 100%.

Group of orthologs #674. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.jiroveci:198

F6UUA2              	100.00%		L0P6Y2              	100.00%
Bootstrap support for F6UUA2 as seed ortholog is 100%.
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #675. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.jiroveci:198

F6TRZ2              	100.00%		L0PC96              	100.00%
Bootstrap support for F6TRZ2 as seed ortholog is 100%.
Bootstrap support for L0PC96 as seed ortholog is 100%.

Group of orthologs #676. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 P.jiroveci:87

F6ZGS5              	100.00%		L0PDS3              	100.00%
Bootstrap support for F6ZGS5 as seed ortholog is 100%.
Bootstrap support for L0PDS3 as seed ortholog is 99%.

Group of orthologs #677. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.jiroveci:196

F6PPC0              	100.00%		L0P9F7              	100.00%
                    	       		L0PGP0              	84.19%
Bootstrap support for F6PPC0 as seed ortholog is 100%.
Bootstrap support for L0P9F7 as seed ortholog is 100%.

Group of orthologs #678. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.jiroveci:196

F6RZU6              	100.00%		L0PD35              	100.00%
Bootstrap support for F6RZU6 as seed ortholog is 100%.
Bootstrap support for L0PD35 as seed ortholog is 100%.

Group of orthologs #679. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.jiroveci:196

F6S1A9              	100.00%		L0PEA9              	100.00%
Bootstrap support for F6S1A9 as seed ortholog is 100%.
Bootstrap support for L0PEA9 as seed ortholog is 100%.

Group of orthologs #680. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 P.jiroveci:196

F6Z1E3              	100.00%		L0PFL8              	100.00%
Bootstrap support for F6Z1E3 as seed ortholog is 100%.
Bootstrap support for L0PFL8 as seed ortholog is 100%.

Group of orthologs #681. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

F6W1C5              	100.00%		L0PAZ8              	100.00%
Bootstrap support for F6W1C5 as seed ortholog is 100%.
Bootstrap support for L0PAZ8 as seed ortholog is 99%.

Group of orthologs #682. Best score 194 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:194

F6YB67              	100.00%		L0PF53              	100.00%
Bootstrap support for F6YB67 as seed ortholog is 99%.
Bootstrap support for L0PF53 as seed ortholog is 100%.

Group of orthologs #683. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:137

H2XY76              	100.00%		L0P8M4              	100.00%
F6VMY2              	17.21%		
H2Y1B2              	5.74%		
Bootstrap support for H2XY76 as seed ortholog is 98%.
Bootstrap support for L0P8M4 as seed ortholog is 100%.

Group of orthologs #684. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 P.jiroveci:193

F6UNA3              	100.00%		L0PHT7              	100.00%
F6QH95              	36.58%		
Bootstrap support for F6UNA3 as seed ortholog is 100%.
Bootstrap support for L0PHT7 as seed ortholog is 100%.

Group of orthologs #685. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 P.jiroveci:193

F6ZYI6              	100.00%		L0P901              	100.00%
Bootstrap support for F6ZYI6 as seed ortholog is 100%.
Bootstrap support for L0P901 as seed ortholog is 100%.

Group of orthologs #686. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 P.jiroveci:193

F6Z5V2              	100.00%		L0PEI5              	100.00%
Bootstrap support for F6Z5V2 as seed ortholog is 100%.
Bootstrap support for L0PEI5 as seed ortholog is 100%.

Group of orthologs #687. Best score 192 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.jiroveci:192

F6WYI2              	100.00%		L0PGL3              	100.00%
Bootstrap support for F6WYI2 as seed ortholog is 99%.
Bootstrap support for L0PGL3 as seed ortholog is 100%.

Group of orthologs #688. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:191

F6TYS5              	100.00%		L0PAA8              	100.00%
Bootstrap support for F6TYS5 as seed ortholog is 98%.
Bootstrap support for L0PAA8 as seed ortholog is 100%.

Group of orthologs #689. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 P.jiroveci:191

F6WQW9              	100.00%		L0PAE0              	100.00%
Bootstrap support for F6WQW9 as seed ortholog is 100%.
Bootstrap support for L0PAE0 as seed ortholog is 100%.

Group of orthologs #690. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 P.jiroveci:191

F7B499              	100.00%		L0P9L7              	100.00%
Bootstrap support for F7B499 as seed ortholog is 100%.
Bootstrap support for L0P9L7 as seed ortholog is 100%.

Group of orthologs #691. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 P.jiroveci:191

F7AEP2              	100.00%		L0PBN7              	100.00%
Bootstrap support for F7AEP2 as seed ortholog is 100%.
Bootstrap support for L0PBN7 as seed ortholog is 100%.

Group of orthologs #692. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.jiroveci:191

F7ASM2              	100.00%		L0PCQ6              	100.00%
Bootstrap support for F7ASM2 as seed ortholog is 99%.
Bootstrap support for L0PCQ6 as seed ortholog is 100%.

Group of orthologs #693. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:41 P.jiroveci:190

F6RRI2              	100.00%		L0PH42              	100.00%
Bootstrap support for F6RRI2 as seed ortholog is 84%.
Bootstrap support for L0PH42 as seed ortholog is 100%.

Group of orthologs #694. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 P.jiroveci:23

F6T453              	100.00%		L0PFJ7              	100.00%
Bootstrap support for F6T453 as seed ortholog is 57%.
Alternative seed ortholog is H2XKH3 (3 bits away from this cluster)
Bootstrap support for L0PFJ7 as seed ortholog is 77%.

Group of orthologs #695. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:14 P.jiroveci:190

F7A771              	100.00%		L0PDB8              	100.00%
Bootstrap support for F7A771 as seed ortholog is 65%.
Alternative seed ortholog is F6QXH6 (14 bits away from this cluster)
Bootstrap support for L0PDB8 as seed ortholog is 100%.

Group of orthologs #696. Best score 189 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:189

F6PPH5              	100.00%		L0PAJ6              	100.00%
Bootstrap support for F6PPH5 as seed ortholog is 99%.
Bootstrap support for L0PAJ6 as seed ortholog is 100%.

Group of orthologs #697. Best score 189 bits
Score difference with first non-orthologous sequence - C.intestinalis:189 P.jiroveci:189

F6YRR0              	100.00%		L0P9Y2              	100.00%
Bootstrap support for F6YRR0 as seed ortholog is 100%.
Bootstrap support for L0P9Y2 as seed ortholog is 100%.

Group of orthologs #698. Best score 189 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 P.jiroveci:189

H2XRU5              	100.00%		L0P7B1              	100.00%
Bootstrap support for H2XRU5 as seed ortholog is 99%.
Bootstrap support for L0P7B1 as seed ortholog is 100%.

Group of orthologs #699. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 P.jiroveci:188

F6U602              	100.00%		L0PFV3              	100.00%
Bootstrap support for F6U602 as seed ortholog is 100%.
Bootstrap support for L0PFV3 as seed ortholog is 100%.

Group of orthologs #700. Best score 187 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:187

F6UUI1              	100.00%		L0PAP9              	100.00%
Bootstrap support for F6UUI1 as seed ortholog is 99%.
Bootstrap support for L0PAP9 as seed ortholog is 100%.

Group of orthologs #701. Best score 187 bits
Score difference with first non-orthologous sequence - C.intestinalis:187 P.jiroveci:187

F6WPY5              	100.00%		L0PA48              	100.00%
Bootstrap support for F6WPY5 as seed ortholog is 100%.
Bootstrap support for L0PA48 as seed ortholog is 100%.

Group of orthologs #702. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.jiroveci:90

F6QI05              	100.00%		L0PAY4              	100.00%
Bootstrap support for F6QI05 as seed ortholog is 99%.
Bootstrap support for L0PAY4 as seed ortholog is 100%.

Group of orthologs #703. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.jiroveci:129

F6T2X1              	100.00%		L0PEJ9              	100.00%
Bootstrap support for F6T2X1 as seed ortholog is 91%.
Bootstrap support for L0PEJ9 as seed ortholog is 99%.

Group of orthologs #704. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 P.jiroveci:186

F6X5M5              	100.00%		L0PFK7              	100.00%
Bootstrap support for F6X5M5 as seed ortholog is 100%.
Bootstrap support for L0PFK7 as seed ortholog is 100%.

Group of orthologs #705. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.jiroveci:186

H2XR17              	100.00%		L0PCI8              	100.00%
Bootstrap support for H2XR17 as seed ortholog is 97%.
Bootstrap support for L0PCI8 as seed ortholog is 100%.

Group of orthologs #706. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 P.jiroveci:185

F6QR08              	100.00%		L0PBM3              	100.00%
Bootstrap support for F6QR08 as seed ortholog is 100%.
Bootstrap support for L0PBM3 as seed ortholog is 100%.

Group of orthologs #707. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 P.jiroveci:185

F6PRZ9              	100.00%		L0PFE1              	100.00%
Bootstrap support for F6PRZ9 as seed ortholog is 100%.
Bootstrap support for L0PFE1 as seed ortholog is 100%.

Group of orthologs #708. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:184

F6U7X2              	100.00%		L0PC02              	100.00%
Bootstrap support for F6U7X2 as seed ortholog is 80%.
Bootstrap support for L0PC02 as seed ortholog is 100%.

Group of orthologs #709. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 P.jiroveci:184

F7B376              	100.00%		L0P9Z4              	100.00%
Bootstrap support for F7B376 as seed ortholog is 100%.
Bootstrap support for L0P9Z4 as seed ortholog is 100%.

Group of orthologs #710. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 P.jiroveci:108

F6ZNK2              	100.00%		L0PFD8              	100.00%
Bootstrap support for F6ZNK2 as seed ortholog is 85%.
Bootstrap support for L0PFD8 as seed ortholog is 99%.

Group of orthologs #711. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 P.jiroveci:45

H2XUE3              	100.00%		L0PGX9              	100.00%
Bootstrap support for H2XUE3 as seed ortholog is 100%.
Bootstrap support for L0PGX9 as seed ortholog is 92%.

Group of orthologs #712. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.jiroveci:183

F6SFM0              	100.00%		L0PDE4              	100.00%
Bootstrap support for F6SFM0 as seed ortholog is 99%.
Bootstrap support for L0PDE4 as seed ortholog is 100%.

Group of orthologs #713. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 P.jiroveci:183

F6U1Z4              	100.00%		L0PBE0              	100.00%
Bootstrap support for F6U1Z4 as seed ortholog is 100%.
Bootstrap support for L0PBE0 as seed ortholog is 100%.

Group of orthologs #714. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 P.jiroveci:183

F6UK51              	100.00%		L0PE85              	100.00%
Bootstrap support for F6UK51 as seed ortholog is 100%.
Bootstrap support for L0PE85 as seed ortholog is 100%.

Group of orthologs #715. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.jiroveci:182

F6S2W5              	100.00%		L0PAS2              	100.00%
Bootstrap support for F6S2W5 as seed ortholog is 99%.
Bootstrap support for L0PAS2 as seed ortholog is 100%.

Group of orthologs #716. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 P.jiroveci:182

H2XVJ7              	100.00%		L0PGT2              	100.00%
Bootstrap support for H2XVJ7 as seed ortholog is 100%.
Bootstrap support for L0PGT2 as seed ortholog is 100%.

Group of orthologs #717. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:127

F6S1S7              	100.00%		L0PCC3              	100.00%
Bootstrap support for F6S1S7 as seed ortholog is 99%.
Bootstrap support for L0PCC3 as seed ortholog is 100%.

Group of orthologs #718. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 P.jiroveci:181

F6ZJP7              	100.00%		L0PFQ4              	100.00%
Bootstrap support for F6ZJP7 as seed ortholog is 99%.
Bootstrap support for L0PFQ4 as seed ortholog is 100%.

Group of orthologs #719. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 P.jiroveci:181

H2XM46              	100.00%		L0PC68              	100.00%
Bootstrap support for H2XM46 as seed ortholog is 100%.
Bootstrap support for L0PC68 as seed ortholog is 100%.

Group of orthologs #720. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 P.jiroveci:181

H2XVN4              	100.00%		L0PFC3              	100.00%
Bootstrap support for H2XVN4 as seed ortholog is 100%.
Bootstrap support for L0PFC3 as seed ortholog is 100%.

Group of orthologs #721. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:180 P.jiroveci:180

F6SSS9              	100.00%		L0P910              	100.00%
Bootstrap support for F6SSS9 as seed ortholog is 100%.
Bootstrap support for L0P910 as seed ortholog is 100%.

Group of orthologs #722. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:180 P.jiroveci:180

F6TAK3              	100.00%		L0PFS4              	100.00%
Bootstrap support for F6TAK3 as seed ortholog is 100%.
Bootstrap support for L0PFS4 as seed ortholog is 100%.

Group of orthologs #723. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:180

F7AEF7              	100.00%		L0PEN4              	100.00%
Bootstrap support for F7AEF7 as seed ortholog is 98%.
Bootstrap support for L0PEN4 as seed ortholog is 100%.

Group of orthologs #724. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:180 P.jiroveci:180

F7B503              	100.00%		L0PGJ8              	100.00%
Bootstrap support for F7B503 as seed ortholog is 100%.
Bootstrap support for L0PGJ8 as seed ortholog is 100%.

Group of orthologs #725. Best score 179 bits
Score difference with first non-orthologous sequence - C.intestinalis:179 P.jiroveci:179

F6TCH6              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	64.86%
Bootstrap support for F6TCH6 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #726. Best score 179 bits
Score difference with first non-orthologous sequence - C.intestinalis:179 P.jiroveci:87

F6X8B5              	100.00%		L0PBL9              	100.00%
Bootstrap support for F6X8B5 as seed ortholog is 100%.
Bootstrap support for L0PBL9 as seed ortholog is 98%.

Group of orthologs #727. Best score 179 bits
Score difference with first non-orthologous sequence - C.intestinalis:179 P.jiroveci:179

F7A9D9              	100.00%		L0PA28              	100.00%
Bootstrap support for F7A9D9 as seed ortholog is 100%.
Bootstrap support for L0PA28 as seed ortholog is 100%.

Group of orthologs #728. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 P.jiroveci:178

F6ZQX9              	100.00%		L0PAC1              	100.00%
Bootstrap support for F6ZQX9 as seed ortholog is 100%.
Bootstrap support for L0PAC1 as seed ortholog is 100%.

Group of orthologs #729. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 P.jiroveci:178

F6Z0E0              	100.00%		L0PD40              	100.00%
Bootstrap support for F6Z0E0 as seed ortholog is 99%.
Bootstrap support for L0PD40 as seed ortholog is 100%.

Group of orthologs #730. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.jiroveci:178

F6YGL5              	100.00%		L0PF75              	100.00%
Bootstrap support for F6YGL5 as seed ortholog is 99%.
Bootstrap support for L0PF75 as seed ortholog is 100%.

Group of orthologs #731. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 P.jiroveci:178

H2XUQ0              	100.00%		L0PGJ6              	100.00%
Bootstrap support for H2XUQ0 as seed ortholog is 100%.
Bootstrap support for L0PGJ6 as seed ortholog is 100%.

Group of orthologs #732. Best score 177 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 P.jiroveci:80

F6RQZ5              	100.00%		L0P8U1              	100.00%
                    	       		L0PGE8              	12.71%
Bootstrap support for F6RQZ5 as seed ortholog is 100%.
Bootstrap support for L0P8U1 as seed ortholog is 95%.

Group of orthologs #733. Best score 177 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 P.jiroveci:177

F6TQ12              	100.00%		L0PAM3              	100.00%
Bootstrap support for F6TQ12 as seed ortholog is 100%.
Bootstrap support for L0PAM3 as seed ortholog is 100%.

Group of orthologs #734. Best score 177 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 P.jiroveci:177

F7A5A0              	100.00%		L0PE97              	100.00%
Bootstrap support for F7A5A0 as seed ortholog is 100%.
Bootstrap support for L0PE97 as seed ortholog is 100%.

Group of orthologs #735. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.jiroveci:176

F6SK91              	100.00%		L0PE02              	100.00%
Bootstrap support for F6SK91 as seed ortholog is 100%.
Bootstrap support for L0PE02 as seed ortholog is 100%.

Group of orthologs #736. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.jiroveci:176

F7A4X2              	100.00%		L0PBE8              	100.00%
Bootstrap support for F7A4X2 as seed ortholog is 100%.
Bootstrap support for L0PBE8 as seed ortholog is 100%.

Group of orthologs #737. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.jiroveci:176

F7A8L8              	100.00%		L0PCE0              	100.00%
Bootstrap support for F7A8L8 as seed ortholog is 100%.
Bootstrap support for L0PCE0 as seed ortholog is 100%.

Group of orthologs #738. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.jiroveci:176

H2XP26              	100.00%		L0PDW5              	100.00%
Bootstrap support for H2XP26 as seed ortholog is 100%.
Bootstrap support for L0PDW5 as seed ortholog is 100%.

Group of orthologs #739. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 P.jiroveci:176

H2XT65              	100.00%		L0PDX4              	100.00%
Bootstrap support for H2XT65 as seed ortholog is 100%.
Bootstrap support for L0PDX4 as seed ortholog is 100%.

Group of orthologs #740. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.jiroveci:90

H2XZV4              	100.00%		L0PF24              	100.00%
F7AW67              	25.12%		
Bootstrap support for H2XZV4 as seed ortholog is 99%.
Bootstrap support for L0PF24 as seed ortholog is 99%.

Group of orthologs #741. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 P.jiroveci:175

F6TKH9              	100.00%		L0P9T6              	100.00%
Bootstrap support for F6TKH9 as seed ortholog is 100%.
Bootstrap support for L0P9T6 as seed ortholog is 100%.

Group of orthologs #742. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.jiroveci:175

F6U8M8              	100.00%		L0PA51              	100.00%
Bootstrap support for F6U8M8 as seed ortholog is 97%.
Bootstrap support for L0PA51 as seed ortholog is 100%.

Group of orthologs #743. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 P.jiroveci:175

F6VA08              	100.00%		L0PEL2              	100.00%
Bootstrap support for F6VA08 as seed ortholog is 100%.
Bootstrap support for L0PEL2 as seed ortholog is 100%.

Group of orthologs #744. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 P.jiroveci:175

F6YXT8              	100.00%		L0PBD4              	100.00%
Bootstrap support for F6YXT8 as seed ortholog is 100%.
Bootstrap support for L0PBD4 as seed ortholog is 100%.

Group of orthologs #745. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.jiroveci:174

F6YRX9              	100.00%		L0PD97              	100.00%
F6TK16              	10.42%		
Bootstrap support for F6YRX9 as seed ortholog is 99%.
Bootstrap support for L0PD97 as seed ortholog is 100%.

Group of orthologs #746. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 P.jiroveci:174

F6V9A1              	100.00%		L0P9I0              	100.00%
Bootstrap support for F6V9A1 as seed ortholog is 100%.
Bootstrap support for L0P9I0 as seed ortholog is 100%.

Group of orthologs #747. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 P.jiroveci:174

H2XKP7              	100.00%		L0PBU8              	100.00%
Bootstrap support for H2XKP7 as seed ortholog is 100%.
Bootstrap support for L0PBU8 as seed ortholog is 100%.

Group of orthologs #748. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:174

H2XQC1              	100.00%		L0PD33              	100.00%
Bootstrap support for H2XQC1 as seed ortholog is 99%.
Bootstrap support for L0PD33 as seed ortholog is 100%.

Group of orthologs #749. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 P.jiroveci:174

H2Y1H7              	100.00%		L0P740              	100.00%
Bootstrap support for H2Y1H7 as seed ortholog is 100%.
Bootstrap support for L0P740 as seed ortholog is 100%.

Group of orthologs #750. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.jiroveci:173

F6RD78              	100.00%		L0P9Z5              	100.00%
Bootstrap support for F6RD78 as seed ortholog is 93%.
Bootstrap support for L0P9Z5 as seed ortholog is 100%.

Group of orthologs #751. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.jiroveci:67

H2XR98              	100.00%		L0PAQ4              	100.00%
Bootstrap support for H2XR98 as seed ortholog is 99%.
Bootstrap support for L0PAQ4 as seed ortholog is 98%.

Group of orthologs #752. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 P.jiroveci:173

H2Y1D7              	100.00%		L0PE09              	100.00%
Bootstrap support for H2Y1D7 as seed ortholog is 100%.
Bootstrap support for L0PE09 as seed ortholog is 100%.

Group of orthologs #753. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:115

F6Z255              	100.00%		L0PIS9              	100.00%
F6UXB3              	12.77%		
H2XWP0              	12.34%		
F6V3Q5              	5.53%		
H2Y054              	5.11%		
Bootstrap support for F6Z255 as seed ortholog is 96%.
Bootstrap support for L0PIS9 as seed ortholog is 99%.

Group of orthologs #754. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 P.jiroveci:172

F6YG81              	100.00%		L0PH81              	100.00%
                    	       		L0PET0              	87.84%
Bootstrap support for F6YG81 as seed ortholog is 100%.
Bootstrap support for L0PH81 as seed ortholog is 100%.

Group of orthologs #755. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 P.jiroveci:172

F6R0P0              	100.00%		L0P9N4              	100.00%
Bootstrap support for F6R0P0 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #756. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 P.jiroveci:172

H2XJH2              	100.00%		L0P7Z0              	100.00%
Bootstrap support for H2XJH2 as seed ortholog is 100%.
Bootstrap support for L0P7Z0 as seed ortholog is 100%.

Group of orthologs #757. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 P.jiroveci:171

F6SDM6              	100.00%		L0PB30              	100.00%
Bootstrap support for F6SDM6 as seed ortholog is 61%.
Alternative seed ortholog is Q1RL50 (29 bits away from this cluster)
Bootstrap support for L0PB30 as seed ortholog is 100%.

Group of orthologs #758. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.jiroveci:171

F6T2R5              	100.00%		L0PB82              	100.00%
Bootstrap support for F6T2R5 as seed ortholog is 100%.
Bootstrap support for L0PB82 as seed ortholog is 100%.

Group of orthologs #759. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.jiroveci:171

F6QQ08              	100.00%		L0PG54              	100.00%
Bootstrap support for F6QQ08 as seed ortholog is 100%.
Bootstrap support for L0PG54 as seed ortholog is 100%.

Group of orthologs #760. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.jiroveci:171

F6UTK0              	100.00%		L0PFW7              	100.00%
Bootstrap support for F6UTK0 as seed ortholog is 100%.
Bootstrap support for L0PFW7 as seed ortholog is 100%.

Group of orthologs #761. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:83

F6YGF8              	100.00%		L0PB17              	100.00%
Bootstrap support for F6YGF8 as seed ortholog is 99%.
Bootstrap support for L0PB17 as seed ortholog is 99%.

Group of orthologs #762. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.jiroveci:171

F6Z3S0              	100.00%		L0PCW8              	100.00%
Bootstrap support for F6Z3S0 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #763. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.jiroveci:171

H2XK69              	100.00%		L0PFD7              	100.00%
Bootstrap support for H2XK69 as seed ortholog is 100%.
Bootstrap support for L0PFD7 as seed ortholog is 100%.

Group of orthologs #764. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 P.jiroveci:171

Q1RL58              	100.00%		L0PFQ5              	100.00%
Bootstrap support for Q1RL58 as seed ortholog is 100%.
Bootstrap support for L0PFQ5 as seed ortholog is 100%.

Group of orthologs #765. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 P.jiroveci:170

F6ZXB2              	100.00%		L0PD76              	100.00%
Bootstrap support for F6ZXB2 as seed ortholog is 100%.
Bootstrap support for L0PD76 as seed ortholog is 100%.

Group of orthologs #766. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 P.jiroveci:169

H2XX92              	100.00%		L0PD52              	100.00%
                    	       		L0PDL8              	90.98%
Bootstrap support for H2XX92 as seed ortholog is 100%.
Bootstrap support for L0PD52 as seed ortholog is 100%.

Group of orthologs #767. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 P.jiroveci:169

F6XDJ2              	100.00%		L0PDG6              	100.00%
Bootstrap support for F6XDJ2 as seed ortholog is 84%.
Bootstrap support for L0PDG6 as seed ortholog is 100%.

Group of orthologs #768. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 P.jiroveci:169

F6ZBY5              	100.00%		L0P9D1              	100.00%
Bootstrap support for F6ZBY5 as seed ortholog is 100%.
Bootstrap support for L0P9D1 as seed ortholog is 100%.

Group of orthologs #769. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 P.jiroveci:169

F6XL41              	100.00%		L0PEK7              	100.00%
Bootstrap support for F6XL41 as seed ortholog is 100%.
Bootstrap support for L0PEK7 as seed ortholog is 100%.

Group of orthologs #770. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 P.jiroveci:169

F6ZHM4              	100.00%		L0PEP7              	100.00%
Bootstrap support for F6ZHM4 as seed ortholog is 100%.
Bootstrap support for L0PEP7 as seed ortholog is 100%.

Group of orthologs #771. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 P.jiroveci:169

F6ZDT1              	100.00%		L0PF05              	100.00%
Bootstrap support for F6ZDT1 as seed ortholog is 99%.
Bootstrap support for L0PF05 as seed ortholog is 100%.

Group of orthologs #772. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 P.jiroveci:84

Q1RL34              	100.00%		L0PFK9              	100.00%
H2XW94              	20.00%		
Bootstrap support for Q1RL34 as seed ortholog is 99%.
Bootstrap support for L0PFK9 as seed ortholog is 97%.

Group of orthologs #773. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 P.jiroveci:84

F6RBK2              	100.00%		L0PDB2              	100.00%
Bootstrap support for F6RBK2 as seed ortholog is 99%.
Bootstrap support for L0PDB2 as seed ortholog is 97%.

Group of orthologs #774. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 P.jiroveci:168

H2XSX6              	100.00%		L0PFH7              	100.00%
Bootstrap support for H2XSX6 as seed ortholog is 100%.
Bootstrap support for L0PFH7 as seed ortholog is 100%.

Group of orthologs #775. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 P.jiroveci:168

H2Y233              	100.00%		L0PC70              	100.00%
Bootstrap support for H2Y233 as seed ortholog is 100%.
Bootstrap support for L0PC70 as seed ortholog is 100%.

Group of orthologs #776. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 P.jiroveci:167

F7BH38              	100.00%		L0PBL3              	100.00%
F6UCD8              	17.71%		
Bootstrap support for F7BH38 as seed ortholog is 100%.
Bootstrap support for L0PBL3 as seed ortholog is 100%.

Group of orthologs #777. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:81

H2XPM6              	100.00%		L0P7L3              	100.00%
Bootstrap support for H2XPM6 as seed ortholog is 99%.
Bootstrap support for L0P7L3 as seed ortholog is 99%.

Group of orthologs #778. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.jiroveci:166

F6T7J7              	100.00%		L0PBH0              	100.00%
                    	       		L0PGS5              	38.96%
Bootstrap support for F6T7J7 as seed ortholog is 100%.
Bootstrap support for L0PBH0 as seed ortholog is 100%.

Group of orthologs #779. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 P.jiroveci:166

F6QZY3              	100.00%		L0PGF9              	100.00%
Bootstrap support for F6QZY3 as seed ortholog is 100%.
Bootstrap support for L0PGF9 as seed ortholog is 100%.

Group of orthologs #780. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 P.jiroveci:166

F6VD75              	100.00%		L0P9Q6              	100.00%
Bootstrap support for F6VD75 as seed ortholog is 100%.
Bootstrap support for L0P9Q6 as seed ortholog is 100%.

Group of orthologs #781. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:165

F6X0N8              	100.00%		L0PFY9              	100.00%
L7N0S6              	86.43%		
Bootstrap support for F6X0N8 as seed ortholog is 100%.
Bootstrap support for L0PFY9 as seed ortholog is 100%.

Group of orthologs #782. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:165

F6YLE1              	100.00%		L0PGJ0              	100.00%
                    	       		L0PGV9              	72.88%
Bootstrap support for F6YLE1 as seed ortholog is 100%.
Bootstrap support for L0PGJ0 as seed ortholog is 100%.

Group of orthologs #783. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:165

F7AFF3              	100.00%		L0PC66              	100.00%
                    	       		L0PBN8              	74.39%
Bootstrap support for F7AFF3 as seed ortholog is 100%.
Bootstrap support for L0PC66 as seed ortholog is 100%.

Group of orthologs #784. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:165

H2XQ06              	100.00%		L0PG76              	100.00%
                    	       		L0PE70              	55.50%
Bootstrap support for H2XQ06 as seed ortholog is 92%.
Bootstrap support for L0PG76 as seed ortholog is 100%.

Group of orthologs #785. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:104

F6TCF8              	100.00%		L0PC80              	100.00%
Bootstrap support for F6TCF8 as seed ortholog is 100%.
Bootstrap support for L0PC80 as seed ortholog is 99%.

Group of orthologs #786. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:165

F6V5I4              	100.00%		L0PDA4              	100.00%
Bootstrap support for F6V5I4 as seed ortholog is 100%.
Bootstrap support for L0PDA4 as seed ortholog is 100%.

Group of orthologs #787. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:165

F6Y8Y8              	100.00%		L0PFW9              	100.00%
Bootstrap support for F6Y8Y8 as seed ortholog is 100%.
Bootstrap support for L0PFW9 as seed ortholog is 100%.

Group of orthologs #788. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:165

F7BBQ0              	100.00%		L0PC06              	100.00%
Bootstrap support for F7BBQ0 as seed ortholog is 100%.
Bootstrap support for L0PC06 as seed ortholog is 100%.

Group of orthologs #789. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 P.jiroveci:125

H2XW02              	100.00%		L0P9W6              	100.00%
Bootstrap support for H2XW02 as seed ortholog is 100%.
Bootstrap support for L0P9W6 as seed ortholog is 100%.

Group of orthologs #790. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 P.jiroveci:164

F6R6C4              	100.00%		L0P6R0              	100.00%
Bootstrap support for F6R6C4 as seed ortholog is 100%.
Bootstrap support for L0P6R0 as seed ortholog is 100%.

Group of orthologs #791. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 P.jiroveci:164

F6S0N6              	100.00%		L0P746              	100.00%
Bootstrap support for F6S0N6 as seed ortholog is 95%.
Bootstrap support for L0P746 as seed ortholog is 100%.

Group of orthologs #792. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.jiroveci:123

F6PIE8              	100.00%		L0PFZ5              	100.00%
Bootstrap support for F6PIE8 as seed ortholog is 88%.
Bootstrap support for L0PFZ5 as seed ortholog is 99%.

Group of orthologs #793. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.jiroveci:164

F6S569              	100.00%		L0PDJ7              	100.00%
Bootstrap support for F6S569 as seed ortholog is 99%.
Bootstrap support for L0PDJ7 as seed ortholog is 100%.

Group of orthologs #794. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 P.jiroveci:164

F6Y6X7              	100.00%		L0PB81              	100.00%
Bootstrap support for F6Y6X7 as seed ortholog is 100%.
Bootstrap support for L0PB81 as seed ortholog is 100%.

Group of orthologs #795. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 P.jiroveci:164

F6ZQ39              	100.00%		L0PE43              	100.00%
Bootstrap support for F6ZQ39 as seed ortholog is 100%.
Bootstrap support for L0PE43 as seed ortholog is 100%.

Group of orthologs #796. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.jiroveci:90

F7ART8              	100.00%		L0PGN9              	100.00%
Bootstrap support for F7ART8 as seed ortholog is 86%.
Bootstrap support for L0PGN9 as seed ortholog is 99%.

Group of orthologs #797. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 P.jiroveci:163

H2XPY5              	100.00%		L0PFH2              	100.00%
F6Y403              	21.69%		
Bootstrap support for H2XPY5 as seed ortholog is 100%.
Bootstrap support for L0PFH2 as seed ortholog is 100%.

Group of orthologs #798. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 P.jiroveci:163

F6X3L7              	100.00%		L0PHA7              	100.00%
Bootstrap support for F6X3L7 as seed ortholog is 100%.
Bootstrap support for L0PHA7 as seed ortholog is 100%.

Group of orthologs #799. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 P.jiroveci:163

F7APT3              	100.00%		L0PCK2              	100.00%
Bootstrap support for F7APT3 as seed ortholog is 100%.
Bootstrap support for L0PCK2 as seed ortholog is 100%.

Group of orthologs #800. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 P.jiroveci:163

F7BP62              	100.00%		L0PE89              	100.00%
Bootstrap support for F7BP62 as seed ortholog is 100%.
Bootstrap support for L0PE89 as seed ortholog is 100%.

Group of orthologs #801. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.jiroveci:162

F6PKT6              	100.00%		L0PES4              	100.00%
Bootstrap support for F6PKT6 as seed ortholog is 100%.
Bootstrap support for L0PES4 as seed ortholog is 100%.

Group of orthologs #802. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:45

F6T718              	100.00%		L0PAL3              	100.00%
Bootstrap support for F6T718 as seed ortholog is 96%.
Bootstrap support for L0PAL3 as seed ortholog is 84%.

Group of orthologs #803. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.jiroveci:45

F6S1K1              	100.00%		L0PGP9              	100.00%
Bootstrap support for F6S1K1 as seed ortholog is 100%.
Bootstrap support for L0PGP9 as seed ortholog is 91%.

Group of orthologs #804. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:162

F6WM99              	100.00%		L0P7Z9              	100.00%
Bootstrap support for F6WM99 as seed ortholog is 99%.
Bootstrap support for L0P7Z9 as seed ortholog is 100%.

Group of orthologs #805. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.jiroveci:162

F6WPS3              	100.00%		L0PDZ3              	100.00%
Bootstrap support for F6WPS3 as seed ortholog is 100%.
Bootstrap support for L0PDZ3 as seed ortholog is 100%.

Group of orthologs #806. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.jiroveci:162

F7BB49              	100.00%		L0PB62              	100.00%
Bootstrap support for F7BB49 as seed ortholog is 100%.
Bootstrap support for L0PB62 as seed ortholog is 100%.

Group of orthologs #807. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 P.jiroveci:162

F7BDH1              	100.00%		L0PGR5              	100.00%
Bootstrap support for F7BDH1 as seed ortholog is 100%.
Bootstrap support for L0PGR5 as seed ortholog is 100%.

Group of orthologs #808. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 P.jiroveci:161

F6WUG3              	100.00%		L0PBJ0              	100.00%
Bootstrap support for F6WUG3 as seed ortholog is 100%.
Bootstrap support for L0PBJ0 as seed ortholog is 100%.

Group of orthologs #809. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 P.jiroveci:161

Q1RL40              	100.00%		L0PCP9              	100.00%
Bootstrap support for Q1RL40 as seed ortholog is 100%.
Bootstrap support for L0PCP9 as seed ortholog is 100%.

Group of orthologs #810. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 P.jiroveci:160

F6SWU7              	100.00%		L0PAH7              	100.00%
Bootstrap support for F6SWU7 as seed ortholog is 100%.
Bootstrap support for L0PAH7 as seed ortholog is 100%.

Group of orthologs #811. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 P.jiroveci:160

F6ZSB0              	100.00%		L0P8Y0              	100.00%
Bootstrap support for F6ZSB0 as seed ortholog is 100%.
Bootstrap support for L0P8Y0 as seed ortholog is 100%.

Group of orthologs #812. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 P.jiroveci:160

F6Z897              	100.00%		L0PBI9              	100.00%
Bootstrap support for F6Z897 as seed ortholog is 100%.
Bootstrap support for L0PBI9 as seed ortholog is 100%.

Group of orthologs #813. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 P.jiroveci:48

F7BK20              	100.00%		L0PAA9              	100.00%
Bootstrap support for F7BK20 as seed ortholog is 100%.
Bootstrap support for L0PAA9 as seed ortholog is 89%.

Group of orthologs #814. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.jiroveci:160

H2XS14              	100.00%		L0PDE1              	100.00%
Bootstrap support for H2XS14 as seed ortholog is 96%.
Bootstrap support for L0PDE1 as seed ortholog is 100%.

Group of orthologs #815. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 P.jiroveci:160

H2XTN0              	100.00%		L0PCV5              	100.00%
Bootstrap support for H2XTN0 as seed ortholog is 100%.
Bootstrap support for L0PCV5 as seed ortholog is 100%.

Group of orthologs #816. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 P.jiroveci:159

F6RPW8              	100.00%		L0PEB9              	100.00%
                    	       		L0PA79              	59.03%
Bootstrap support for F6RPW8 as seed ortholog is 100%.
Bootstrap support for L0PEB9 as seed ortholog is 100%.

Group of orthologs #817. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 P.jiroveci:159

F6YWB6              	100.00%		L0P912              	100.00%
                    	       		L0P908              	90.33%
Bootstrap support for F6YWB6 as seed ortholog is 100%.
Bootstrap support for L0P912 as seed ortholog is 100%.

Group of orthologs #818. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:159

F7BA12              	100.00%		L0PAV2              	100.00%
F6Z145              	5.37%		
Bootstrap support for F7BA12 as seed ortholog is 91%.
Bootstrap support for L0PAV2 as seed ortholog is 100%.

Group of orthologs #819. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 P.jiroveci:159

F6UE24              	100.00%		L0PA78              	100.00%
Bootstrap support for F6UE24 as seed ortholog is 100%.
Bootstrap support for L0PA78 as seed ortholog is 100%.

Group of orthologs #820. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.jiroveci:158

F6Q484              	100.00%		L0P8H6              	100.00%
Bootstrap support for F6Q484 as seed ortholog is 100%.
Bootstrap support for L0P8H6 as seed ortholog is 100%.

Group of orthologs #821. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.jiroveci:158

F7B383              	100.00%		L0PA35              	100.00%
Bootstrap support for F7B383 as seed ortholog is 100%.
Bootstrap support for L0PA35 as seed ortholog is 100%.

Group of orthologs #822. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 P.jiroveci:158

H2XXH1              	100.00%		L0PGZ5              	100.00%
Bootstrap support for H2XXH1 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #823. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:38 P.jiroveci:105

H2Y3H5              	100.00%		L0PE79              	100.00%
F6SBR0              	31.28%		
H2Y3T6              	14.69%		
F6Q349              	10.43%		
H2XXH6              	7.58%		
Bootstrap support for H2Y3H5 as seed ortholog is 88%.
Bootstrap support for L0PE79 as seed ortholog is 99%.

Group of orthologs #824. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:81

H2XMA1              	100.00%		L0PEX6              	100.00%
F6QIM1              	15.82%		
Bootstrap support for H2XMA1 as seed ortholog is 99%.
Bootstrap support for L0PEX6 as seed ortholog is 99%.

Group of orthologs #825. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 P.jiroveci:157

F6V4K8              	100.00%		L0PGN8              	100.00%
Bootstrap support for F6V4K8 as seed ortholog is 100%.
Bootstrap support for L0PGN8 as seed ortholog is 100%.

Group of orthologs #826. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.jiroveci:157

F7ATN8              	100.00%		L0PE37              	100.00%
Bootstrap support for F7ATN8 as seed ortholog is 97%.
Bootstrap support for L0PE37 as seed ortholog is 100%.

Group of orthologs #827. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:156

F6YIJ5              	100.00%		L0PDR9              	100.00%
                    	       		L0P8I3              	71.99%
Bootstrap support for F6YIJ5 as seed ortholog is 100%.
Bootstrap support for L0PDR9 as seed ortholog is 100%.

Group of orthologs #828. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:156

F6QWU8              	100.00%		L0PFG9              	100.00%
Bootstrap support for F6QWU8 as seed ortholog is 100%.
Bootstrap support for L0PFG9 as seed ortholog is 100%.

Group of orthologs #829. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:156

F7AYB2              	100.00%		L0PBG3              	100.00%
Bootstrap support for F7AYB2 as seed ortholog is 100%.
Bootstrap support for L0PBG3 as seed ortholog is 100%.

Group of orthologs #830. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 P.jiroveci:156

H2XY13              	100.00%		L0PCP0              	100.00%
Bootstrap support for H2XY13 as seed ortholog is 100%.
Bootstrap support for L0PCP0 as seed ortholog is 100%.

Group of orthologs #831. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 P.jiroveci:155

F6RE18              	100.00%		L0P8C9              	100.00%
Bootstrap support for F6RE18 as seed ortholog is 100%.
Bootstrap support for L0P8C9 as seed ortholog is 100%.

Group of orthologs #832. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 P.jiroveci:155

F7AD97              	100.00%		L0PEV6              	100.00%
Bootstrap support for F7AD97 as seed ortholog is 100%.
Bootstrap support for L0PEV6 as seed ortholog is 100%.

Group of orthologs #833. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 P.jiroveci:155

F7BHN6              	100.00%		L0PC20              	100.00%
Bootstrap support for F7BHN6 as seed ortholog is 100%.
Bootstrap support for L0PC20 as seed ortholog is 100%.

Group of orthologs #834. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 P.jiroveci:155

H2XSG4              	100.00%		L0PGP5              	100.00%
Bootstrap support for H2XSG4 as seed ortholog is 100%.
Bootstrap support for L0PGP5 as seed ortholog is 100%.

Group of orthologs #835. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.jiroveci:154

F6PHE6              	100.00%		L0PEN3              	100.00%
Bootstrap support for F6PHE6 as seed ortholog is 100%.
Bootstrap support for L0PEN3 as seed ortholog is 100%.

Group of orthologs #836. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.jiroveci:154

F6VJL7              	100.00%		L0PDH1              	100.00%
Bootstrap support for F6VJL7 as seed ortholog is 100%.
Bootstrap support for L0PDH1 as seed ortholog is 100%.

Group of orthologs #837. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.jiroveci:154

F6WQE3              	100.00%		L0PFX5              	100.00%
Bootstrap support for F6WQE3 as seed ortholog is 100%.
Bootstrap support for L0PFX5 as seed ortholog is 100%.

Group of orthologs #838. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 P.jiroveci:154

H2XWQ2              	100.00%		L0P8D5              	100.00%
Bootstrap support for H2XWQ2 as seed ortholog is 100%.
Bootstrap support for L0P8D5 as seed ortholog is 100%.

Group of orthologs #839. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 P.jiroveci:153

F6XG50              	100.00%		L0P9G8              	100.00%
                    	       		L0PDI0              	52.88%
Bootstrap support for F6XG50 as seed ortholog is 100%.
Bootstrap support for L0P9G8 as seed ortholog is 100%.

Group of orthologs #840. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 P.jiroveci:153

F6WWT1              	100.00%		L0P8F0              	100.00%
Bootstrap support for F6WWT1 as seed ortholog is 100%.
Bootstrap support for L0P8F0 as seed ortholog is 100%.

Group of orthologs #841. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 P.jiroveci:153

F6YFR8              	100.00%		L0P8V3              	100.00%
Bootstrap support for F6YFR8 as seed ortholog is 100%.
Bootstrap support for L0P8V3 as seed ortholog is 100%.

Group of orthologs #842. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:67

H2XVE0              	100.00%		L0PEI1              	100.00%
Bootstrap support for H2XVE0 as seed ortholog is 98%.
Bootstrap support for L0PEI1 as seed ortholog is 99%.

Group of orthologs #843. Best score 152 bits
Score difference with first non-orthologous sequence - C.intestinalis:152 P.jiroveci:152

F6WYT3              	100.00%		L0PFY6              	100.00%
H2XRA0              	27.45%		
Bootstrap support for F6WYT3 as seed ortholog is 100%.
Bootstrap support for L0PFY6 as seed ortholog is 100%.

Group of orthologs #844. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 P.jiroveci:151

F6PIZ2              	100.00%		L0PC81              	100.00%
Bootstrap support for F6PIZ2 as seed ortholog is 77%.
Bootstrap support for L0PC81 as seed ortholog is 100%.

Group of orthologs #845. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:151

F7B6W8              	100.00%		L0P6S2              	100.00%
Bootstrap support for F7B6W8 as seed ortholog is 100%.
Bootstrap support for L0P6S2 as seed ortholog is 100%.

Group of orthologs #846. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:151

F7B1W3              	100.00%		L0PCU6              	100.00%
Bootstrap support for F7B1W3 as seed ortholog is 100%.
Bootstrap support for L0PCU6 as seed ortholog is 100%.

Group of orthologs #847. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 P.jiroveci:151

H2XP72              	100.00%		L0PCF8              	100.00%
Bootstrap support for H2XP72 as seed ortholog is 100%.
Bootstrap support for L0PCF8 as seed ortholog is 100%.

Group of orthologs #848. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:151

H2XME3              	100.00%		L0PF33              	100.00%
Bootstrap support for H2XME3 as seed ortholog is 99%.
Bootstrap support for L0PF33 as seed ortholog is 100%.

Group of orthologs #849. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:150

F7AZA1              	100.00%		L0PDP9              	100.00%
Bootstrap support for F7AZA1 as seed ortholog is 99%.
Bootstrap support for L0PDP9 as seed ortholog is 100%.

Group of orthologs #850. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 P.jiroveci:149

F6WH15              	100.00%		L0PEG0              	100.00%
Bootstrap support for F6WH15 as seed ortholog is 100%.
Bootstrap support for L0PEG0 as seed ortholog is 100%.

Group of orthologs #851. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.jiroveci:148

F6R901              	100.00%		L0P8D9              	100.00%
Bootstrap support for F6R901 as seed ortholog is 100%.
Bootstrap support for L0P8D9 as seed ortholog is 100%.

Group of orthologs #852. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.jiroveci:148

F6T6F5              	100.00%		L0P8P5              	100.00%
Bootstrap support for F6T6F5 as seed ortholog is 100%.
Bootstrap support for L0P8P5 as seed ortholog is 100%.

Group of orthologs #853. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.jiroveci:148

F6T8R8              	100.00%		L0P9U0              	100.00%
Bootstrap support for F6T8R8 as seed ortholog is 100%.
Bootstrap support for L0P9U0 as seed ortholog is 100%.

Group of orthologs #854. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.jiroveci:148

F6S2C6              	100.00%		L0PE13              	100.00%
Bootstrap support for F6S2C6 as seed ortholog is 100%.
Bootstrap support for L0PE13 as seed ortholog is 100%.

Group of orthologs #855. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.jiroveci:148

F6UZU2              	100.00%		L0PEN8              	100.00%
Bootstrap support for F6UZU2 as seed ortholog is 100%.
Bootstrap support for L0PEN8 as seed ortholog is 100%.

Group of orthologs #856. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 P.jiroveci:148

F7BNU5              	100.00%		L0P733              	100.00%
Bootstrap support for F7BNU5 as seed ortholog is 100%.
Bootstrap support for L0P733 as seed ortholog is 100%.

Group of orthologs #857. Best score 147 bits
Score difference with first non-orthologous sequence - C.intestinalis:147 P.jiroveci:147

F6S7T3              	100.00%		L0PDS2              	100.00%
Bootstrap support for F6S7T3 as seed ortholog is 100%.
Bootstrap support for L0PDS2 as seed ortholog is 100%.

Group of orthologs #858. Best score 147 bits
Score difference with first non-orthologous sequence - C.intestinalis:147 P.jiroveci:147

F6Y7V1              	100.00%		L0PCC8              	100.00%
Bootstrap support for F6Y7V1 as seed ortholog is 100%.
Bootstrap support for L0PCC8 as seed ortholog is 100%.

Group of orthologs #859. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 P.jiroveci:146

F6R255              	100.00%		L0P949              	100.00%
Bootstrap support for F6R255 as seed ortholog is 100%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #860. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 P.jiroveci:146

F6UUV5              	100.00%		L0P8P0              	100.00%
Bootstrap support for F6UUV5 as seed ortholog is 100%.
Bootstrap support for L0P8P0 as seed ortholog is 100%.

Group of orthologs #861. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 P.jiroveci:146

F7AMW5              	100.00%		L0PB66              	100.00%
Bootstrap support for F7AMW5 as seed ortholog is 100%.
Bootstrap support for L0PB66 as seed ortholog is 100%.

Group of orthologs #862. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.jiroveci:88

H2XPL6              	100.00%		L0PBF9              	100.00%
Bootstrap support for H2XPL6 as seed ortholog is 98%.
Bootstrap support for L0PBF9 as seed ortholog is 99%.

Group of orthologs #863. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:28 P.jiroveci:145

F6R9S1              	100.00%		L0P963              	100.00%
Bootstrap support for F6R9S1 as seed ortholog is 72%.
Alternative seed ortholog is F7B8M0 (28 bits away from this cluster)
Bootstrap support for L0P963 as seed ortholog is 100%.

Group of orthologs #864. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.jiroveci:145

F6UXG6              	100.00%		L0P9D2              	100.00%
Bootstrap support for F6UXG6 as seed ortholog is 99%.
Bootstrap support for L0P9D2 as seed ortholog is 100%.

Group of orthologs #865. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:145 P.jiroveci:145

H2XPM9              	100.00%		L0PDW9              	100.00%
Bootstrap support for H2XPM9 as seed ortholog is 100%.
Bootstrap support for L0PDW9 as seed ortholog is 100%.

Group of orthologs #866. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:144

H2XWC0              	100.00%		L0PDL7              	100.00%
H2XL87              	26.73%		
F6VY76              	8.91%		
Bootstrap support for H2XWC0 as seed ortholog is 100%.
Bootstrap support for L0PDL7 as seed ortholog is 100%.

Group of orthologs #867. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 P.jiroveci:144

F6R2P7              	100.00%		L0P8G3              	100.00%
Bootstrap support for F6R2P7 as seed ortholog is 100%.
Bootstrap support for L0P8G3 as seed ortholog is 100%.

Group of orthologs #868. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:144

F6VN10              	100.00%		L0P7E9              	100.00%
Bootstrap support for F6VN10 as seed ortholog is 98%.
Bootstrap support for L0P7E9 as seed ortholog is 100%.

Group of orthologs #869. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 P.jiroveci:144

F6V580              	100.00%		L0PGK0              	100.00%
Bootstrap support for F6V580 as seed ortholog is 100%.
Bootstrap support for L0PGK0 as seed ortholog is 100%.

Group of orthologs #870. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 P.jiroveci:144

F6WF37              	100.00%		L0PG38              	100.00%
Bootstrap support for F6WF37 as seed ortholog is 100%.
Bootstrap support for L0PG38 as seed ortholog is 100%.

Group of orthologs #871. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 P.jiroveci:144

H2XWZ3              	100.00%		L0P7Y4              	100.00%
Bootstrap support for H2XWZ3 as seed ortholog is 100%.
Bootstrap support for L0P7Y4 as seed ortholog is 100%.

Group of orthologs #872. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 P.jiroveci:144

H2Y2U8              	100.00%		L0PBK8              	100.00%
Bootstrap support for H2Y2U8 as seed ortholog is 100%.
Bootstrap support for L0PBK8 as seed ortholog is 100%.

Group of orthologs #873. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 P.jiroveci:143

F6W9C9              	100.00%		L0PFG0              	100.00%
Bootstrap support for F6W9C9 as seed ortholog is 100%.
Bootstrap support for L0PFG0 as seed ortholog is 100%.

Group of orthologs #874. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 P.jiroveci:143

H2XPW5              	100.00%		L0P996              	100.00%
Bootstrap support for H2XPW5 as seed ortholog is 100%.
Bootstrap support for L0P996 as seed ortholog is 100%.

Group of orthologs #875. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 P.jiroveci:142

F6WWX5              	100.00%		L0PB59              	100.00%
Bootstrap support for F6WWX5 as seed ortholog is 100%.
Bootstrap support for L0PB59 as seed ortholog is 100%.

Group of orthologs #876. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 P.jiroveci:142

F7AUY7              	100.00%		L0P778              	100.00%
Bootstrap support for F7AUY7 as seed ortholog is 100%.
Bootstrap support for L0P778 as seed ortholog is 100%.

Group of orthologs #877. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 P.jiroveci:142

F7AG43              	100.00%		L0PCG3              	100.00%
Bootstrap support for F7AG43 as seed ortholog is 100%.
Bootstrap support for L0PCG3 as seed ortholog is 100%.

Group of orthologs #878. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 P.jiroveci:141

F6ZHA2              	100.00%		L0P9Q0              	100.00%
Bootstrap support for F6ZHA2 as seed ortholog is 100%.
Bootstrap support for L0P9Q0 as seed ortholog is 100%.

Group of orthologs #879. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.jiroveci:140

F6T485              	100.00%		L0PFZ8              	100.00%
Bootstrap support for F6T485 as seed ortholog is 96%.
Bootstrap support for L0PFZ8 as seed ortholog is 100%.

Group of orthologs #880. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 P.jiroveci:140

F6TGU6              	100.00%		L0PG65              	100.00%
Bootstrap support for F6TGU6 as seed ortholog is 57%.
Alternative seed ortholog is F6W4M3 (9 bits away from this cluster)
Bootstrap support for L0PG65 as seed ortholog is 100%.

Group of orthologs #881. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 P.jiroveci:140

F6WEC1              	100.00%		L0PAS7              	100.00%
Bootstrap support for F6WEC1 as seed ortholog is 100%.
Bootstrap support for L0PAS7 as seed ortholog is 100%.

Group of orthologs #882. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 P.jiroveci:140

F7BDK3              	100.00%		L0P7V4              	100.00%
Bootstrap support for F7BDK3 as seed ortholog is 100%.
Bootstrap support for L0P7V4 as seed ortholog is 100%.

Group of orthologs #883. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 P.jiroveci:140

F7B3M4              	100.00%		L0PAB8              	100.00%
Bootstrap support for F7B3M4 as seed ortholog is 100%.
Bootstrap support for L0PAB8 as seed ortholog is 100%.

Group of orthologs #884. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 P.jiroveci:140

H2XVJ2              	100.00%		L0PAZ1              	100.00%
Bootstrap support for H2XVJ2 as seed ortholog is 100%.
Bootstrap support for L0PAZ1 as seed ortholog is 100%.

Group of orthologs #885. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.jiroveci:139

F6WHI9              	100.00%		L0P8Z0              	100.00%
                    	       		L0PC60              	96.78%
Bootstrap support for F6WHI9 as seed ortholog is 100%.
Bootstrap support for L0P8Z0 as seed ortholog is 100%.

Group of orthologs #886. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.jiroveci:139

F6V4L6              	100.00%		L0P8D7              	100.00%
Bootstrap support for F6V4L6 as seed ortholog is 100%.
Bootstrap support for L0P8D7 as seed ortholog is 100%.

Group of orthologs #887. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 P.jiroveci:139

F7A429              	100.00%		L0PF66              	100.00%
Bootstrap support for F7A429 as seed ortholog is 100%.
Bootstrap support for L0PF66 as seed ortholog is 100%.

Group of orthologs #888. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 P.jiroveci:138

F6VMC6              	100.00%		L0PEG7              	100.00%
Bootstrap support for F6VMC6 as seed ortholog is 100%.
Bootstrap support for L0PEG7 as seed ortholog is 100%.

Group of orthologs #889. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.jiroveci:137

F6X915              	100.00%		L0P6Q5              	100.00%
Bootstrap support for F6X915 as seed ortholog is 100%.
Bootstrap support for L0P6Q5 as seed ortholog is 100%.

Group of orthologs #890. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.jiroveci:137

F6X0F3              	100.00%		L0P8S1              	100.00%
Bootstrap support for F6X0F3 as seed ortholog is 100%.
Bootstrap support for L0P8S1 as seed ortholog is 100%.

Group of orthologs #891. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.jiroveci:137

F6ZMJ7              	100.00%		L0P800              	100.00%
Bootstrap support for F6ZMJ7 as seed ortholog is 100%.
Bootstrap support for L0P800 as seed ortholog is 100%.

Group of orthologs #892. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 P.jiroveci:21

F6ZU35              	100.00%		L0PHD0              	100.00%
Bootstrap support for F6ZU35 as seed ortholog is 100%.
Bootstrap support for L0PHD0 as seed ortholog is 63%.
Alternative seed ortholog is L0PEI4 (21 bits away from this cluster)

Group of orthologs #893. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 P.jiroveci:136

F6Q8U3              	100.00%		L0PBQ0              	100.00%
Bootstrap support for F6Q8U3 as seed ortholog is 100%.
Bootstrap support for L0PBQ0 as seed ortholog is 100%.

Group of orthologs #894. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 P.jiroveci:136

F6TA53              	100.00%		L0PA22              	100.00%
Bootstrap support for F6TA53 as seed ortholog is 100%.
Bootstrap support for L0PA22 as seed ortholog is 100%.

Group of orthologs #895. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 P.jiroveci:135

F6WC79              	100.00%		L0P780              	100.00%
Bootstrap support for F6WC79 as seed ortholog is 100%.
Bootstrap support for L0P780 as seed ortholog is 100%.

Group of orthologs #896. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 P.jiroveci:69

F6X9U7              	100.00%		L0PCN2              	100.00%
Bootstrap support for F6X9U7 as seed ortholog is 97%.
Bootstrap support for L0PCN2 as seed ortholog is 95%.

Group of orthologs #897. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 P.jiroveci:135

F7BKD9              	100.00%		L0P957              	100.00%
Bootstrap support for F7BKD9 as seed ortholog is 100%.
Bootstrap support for L0P957 as seed ortholog is 100%.

Group of orthologs #898. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 P.jiroveci:135

F7BMN7              	100.00%		L0P9F2              	100.00%
Bootstrap support for F7BMN7 as seed ortholog is 100%.
Bootstrap support for L0P9F2 as seed ortholog is 100%.

Group of orthologs #899. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 P.jiroveci:135

H2XK95              	100.00%		L0PFD5              	100.00%
Bootstrap support for H2XK95 as seed ortholog is 100%.
Bootstrap support for L0PFD5 as seed ortholog is 100%.

Group of orthologs #900. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 P.jiroveci:135

H2XQJ8              	100.00%		L0PC24              	100.00%
Bootstrap support for H2XQJ8 as seed ortholog is 100%.
Bootstrap support for L0PC24 as seed ortholog is 100%.

Group of orthologs #901. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.jiroveci:134

Q1RL20              	100.00%		L0PFB3              	100.00%
F6WI19              	87.19%		
H2XMP0              	63.73%		
Q1RL21              	62.23%		
H2XZ50              	59.40%		
Bootstrap support for Q1RL20 as seed ortholog is 100%.
Bootstrap support for L0PFB3 as seed ortholog is 100%.

Group of orthologs #902. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.jiroveci:134

F6UMQ0              	100.00%		L0PE62              	100.00%
Bootstrap support for F6UMQ0 as seed ortholog is 100%.
Bootstrap support for L0PE62 as seed ortholog is 100%.

Group of orthologs #903. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.jiroveci:58

F6VLD0              	100.00%		L0PCZ0              	100.00%
Bootstrap support for F6VLD0 as seed ortholog is 100%.
Bootstrap support for L0PCZ0 as seed ortholog is 97%.

Group of orthologs #904. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 P.jiroveci:134

F7A9M5              	100.00%		L0PFX0              	100.00%
Bootstrap support for F7A9M5 as seed ortholog is 100%.
Bootstrap support for L0PFX0 as seed ortholog is 100%.

Group of orthologs #905. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:4 P.jiroveci:133

L7N0R2              	100.00%		L0PBS7              	100.00%
F6UAX0              	53.51%		
F6R6Q8              	42.88%		
H2Y1C2              	35.67%		
Q1RLF1              	31.12%		
F6W0H5              	29.60%		
H2Y260              	29.41%		
H2XZX8              	29.22%		
Q1RL67              	27.32%		
H2XX05              	26.00%		
Q1RL43              	21.82%		
F6RSE2              	20.68%		
Q1RLE9              	15.18%		
F6WPJ4              	12.52%		
H2XKK9              	12.33%		
F6TCA9              	10.44%		
Q1RL62              	10.44%		
F6QEX4              	9.11%		
F6VWP3              	6.07%		
Q1RLE2              	5.88%		
Q4H2L1              	5.31%		
Bootstrap support for L7N0R2 as seed ortholog is 53%.
Alternative seed ortholog is Q1RLE5 (4 bits away from this cluster)
Bootstrap support for L0PBS7 as seed ortholog is 100%.

Group of orthologs #906. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:133

F6PMM3              	100.00%		L0PAM9              	100.00%
Bootstrap support for F6PMM3 as seed ortholog is 100%.
Bootstrap support for L0PAM9 as seed ortholog is 100%.

Group of orthologs #907. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:133

F6QIV0              	100.00%		L0PCH6              	100.00%
Bootstrap support for F6QIV0 as seed ortholog is 100%.
Bootstrap support for L0PCH6 as seed ortholog is 100%.

Group of orthologs #908. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:133

F6XTZ6              	100.00%		L0PAA1              	100.00%
Bootstrap support for F6XTZ6 as seed ortholog is 100%.
Bootstrap support for L0PAA1 as seed ortholog is 100%.

Group of orthologs #909. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 P.jiroveci:133

H2XSQ8              	100.00%		L0PA83              	100.00%
Bootstrap support for H2XSQ8 as seed ortholog is 100%.
Bootstrap support for L0PA83 as seed ortholog is 100%.

Group of orthologs #910. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 P.jiroveci:132

F6SDU1              	100.00%		L0P9F5              	100.00%
Bootstrap support for F6SDU1 as seed ortholog is 100%.
Bootstrap support for L0P9F5 as seed ortholog is 100%.

Group of orthologs #911. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 P.jiroveci:132

F6T6Y7              	100.00%		L0P9B0              	100.00%
Bootstrap support for F6T6Y7 as seed ortholog is 100%.
Bootstrap support for L0P9B0 as seed ortholog is 100%.

Group of orthologs #912. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 P.jiroveci:132

F6RR57              	100.00%		L0PIQ9              	100.00%
Bootstrap support for F6RR57 as seed ortholog is 100%.
Bootstrap support for L0PIQ9 as seed ortholog is 100%.

Group of orthologs #913. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:132

F7ASZ2              	100.00%		L0PDN5              	100.00%
Bootstrap support for F7ASZ2 as seed ortholog is 97%.
Bootstrap support for L0PDN5 as seed ortholog is 100%.

Group of orthologs #914. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:53

H2XNZ7              	100.00%		L0PF38              	100.00%
Bootstrap support for H2XNZ7 as seed ortholog is 99%.
Bootstrap support for L0PF38 as seed ortholog is 98%.

Group of orthologs #915. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 P.jiroveci:131

F6YCY6              	100.00%		L0PCX3              	100.00%
F6XYB7              	8.33%		
Bootstrap support for F6YCY6 as seed ortholog is 100%.
Bootstrap support for L0PCX3 as seed ortholog is 100%.

Group of orthologs #916. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 P.jiroveci:131

F6YH93              	100.00%		L0P7U2              	100.00%
Bootstrap support for F6YH93 as seed ortholog is 100%.
Bootstrap support for L0P7U2 as seed ortholog is 100%.

Group of orthologs #917. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:131

F6ZUD7              	100.00%		L0PCT4              	100.00%
Bootstrap support for F6ZUD7 as seed ortholog is 95%.
Bootstrap support for L0PCT4 as seed ortholog is 100%.

Group of orthologs #918. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 P.jiroveci:131

H2Y0Q6              	100.00%		L0PFH3              	100.00%
Bootstrap support for H2Y0Q6 as seed ortholog is 100%.
Bootstrap support for L0PFH3 as seed ortholog is 100%.

Group of orthologs #919. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 P.jiroveci:130

F6SXV5              	100.00%		L0PE18              	100.00%
B1H3L8              	6.20%		
Bootstrap support for F6SXV5 as seed ortholog is 100%.
Bootstrap support for L0PE18 as seed ortholog is 100%.

Group of orthologs #920. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 P.jiroveci:130

F6RED0              	100.00%		L0P8L2              	100.00%
Bootstrap support for F6RED0 as seed ortholog is 100%.
Bootstrap support for L0P8L2 as seed ortholog is 100%.

Group of orthologs #921. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 P.jiroveci:25

F6ZLL3              	100.00%		L0PAG6              	100.00%
Bootstrap support for F6ZLL3 as seed ortholog is 87%.
Bootstrap support for L0PAG6 as seed ortholog is 79%.

Group of orthologs #922. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 P.jiroveci:130

F6YGD1              	100.00%		L0PEL6              	100.00%
Bootstrap support for F6YGD1 as seed ortholog is 100%.
Bootstrap support for L0PEL6 as seed ortholog is 100%.

Group of orthologs #923. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.jiroveci:129

F6W7Q3              	100.00%		L0P940              	100.00%
Bootstrap support for F6W7Q3 as seed ortholog is 100%.
Bootstrap support for L0P940 as seed ortholog is 100%.

Group of orthologs #924. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.jiroveci:129

F6WX23              	100.00%		L0PAR2              	100.00%
Bootstrap support for F6WX23 as seed ortholog is 100%.
Bootstrap support for L0PAR2 as seed ortholog is 100%.

Group of orthologs #925. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.jiroveci:129

F6XNX8              	100.00%		L0PF62              	100.00%
Bootstrap support for F6XNX8 as seed ortholog is 100%.
Bootstrap support for L0PF62 as seed ortholog is 100%.

Group of orthologs #926. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 P.jiroveci:129

F7BK44              	100.00%		L0PD00              	100.00%
Bootstrap support for F7BK44 as seed ortholog is 100%.
Bootstrap support for L0PD00 as seed ortholog is 100%.

Group of orthologs #927. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 P.jiroveci:128

F6Q9F4              	100.00%		L0P984              	100.00%
F6W804              	32.55%		
Bootstrap support for F6Q9F4 as seed ortholog is 89%.
Bootstrap support for L0P984 as seed ortholog is 100%.

Group of orthologs #928. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 P.jiroveci:128

F6W3K8              	100.00%		L0PGC0              	100.00%
Bootstrap support for F6W3K8 as seed ortholog is 100%.
Bootstrap support for L0PGC0 as seed ortholog is 100%.

Group of orthologs #929. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:128

F6YVE9              	100.00%		L0PBZ4              	100.00%
Bootstrap support for F6YVE9 as seed ortholog is 98%.
Bootstrap support for L0PBZ4 as seed ortholog is 100%.

Group of orthologs #930. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.jiroveci:128

H2XXD0              	100.00%		L0P7A4              	100.00%
Bootstrap support for H2XXD0 as seed ortholog is 98%.
Bootstrap support for L0P7A4 as seed ortholog is 100%.

Group of orthologs #931. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 P.jiroveci:128

Q4H3U1              	100.00%		L0PB34              	100.00%
Bootstrap support for Q4H3U1 as seed ortholog is 100%.
Bootstrap support for L0PB34 as seed ortholog is 100%.

Group of orthologs #932. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 P.jiroveci:80

F6V6S8              	100.00%		L0PD77              	100.00%
Bootstrap support for F6V6S8 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 99%.

Group of orthologs #933. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 P.jiroveci:82

F6WW36              	100.00%		L0P903              	100.00%
H2XRG7              	23.95%		
Bootstrap support for F6WW36 as seed ortholog is 86%.
Bootstrap support for L0P903 as seed ortholog is 99%.

Group of orthologs #934. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 P.jiroveci:126

F6PIG9              	100.00%		L0PCX8              	100.00%
Bootstrap support for F6PIG9 as seed ortholog is 100%.
Bootstrap support for L0PCX8 as seed ortholog is 100%.

Group of orthologs #935. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 P.jiroveci:126

F6VSM2              	100.00%		L0P8K4              	100.00%
Bootstrap support for F6VSM2 as seed ortholog is 100%.
Bootstrap support for L0P8K4 as seed ortholog is 100%.

Group of orthologs #936. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.jiroveci:72

H2XR04              	100.00%		L0P8G0              	100.00%
Bootstrap support for H2XR04 as seed ortholog is 99%.
Bootstrap support for L0P8G0 as seed ortholog is 99%.

Group of orthologs #937. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.jiroveci:125

F6VN74              	100.00%		L0P938              	100.00%
Bootstrap support for F6VN74 as seed ortholog is 100%.
Bootstrap support for L0P938 as seed ortholog is 100%.

Group of orthologs #938. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 P.jiroveci:125

H2XS17              	100.00%		L0P9E5              	100.00%
Bootstrap support for H2XS17 as seed ortholog is 100%.
Bootstrap support for L0P9E5 as seed ortholog is 100%.

Group of orthologs #939. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.jiroveci:124

F6RKZ8              	100.00%		L0P7A1              	100.00%
Bootstrap support for F6RKZ8 as seed ortholog is 100%.
Bootstrap support for L0P7A1 as seed ortholog is 100%.

Group of orthologs #940. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 P.jiroveci:14

F6RB18              	100.00%		L0PCI0              	100.00%
Bootstrap support for F6RB18 as seed ortholog is 77%.
Bootstrap support for L0PCI0 as seed ortholog is 64%.
Alternative seed ortholog is L0PC48 (14 bits away from this cluster)

Group of orthologs #941. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.jiroveci:124

F6RT01              	100.00%		L0PF65              	100.00%
Bootstrap support for F6RT01 as seed ortholog is 100%.
Bootstrap support for L0PF65 as seed ortholog is 100%.

Group of orthologs #942. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.jiroveci:124

F6Z235              	100.00%		L0PG87              	100.00%
Bootstrap support for F6Z235 as seed ortholog is 100%.
Bootstrap support for L0PG87 as seed ortholog is 100%.

Group of orthologs #943. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.jiroveci:124

F6ZF56              	100.00%		L0PFR0              	100.00%
Bootstrap support for F6ZF56 as seed ortholog is 100%.
Bootstrap support for L0PFR0 as seed ortholog is 100%.

Group of orthologs #944. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.jiroveci:124

H2XTB6              	100.00%		L0P8A3              	100.00%
Bootstrap support for H2XTB6 as seed ortholog is 100%.
Bootstrap support for L0P8A3 as seed ortholog is 100%.

Group of orthologs #945. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 P.jiroveci:124

Q1RPU6              	100.00%		L0P9L0              	100.00%
Bootstrap support for Q1RPU6 as seed ortholog is 100%.
Bootstrap support for L0P9L0 as seed ortholog is 100%.

Group of orthologs #946. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 P.jiroveci:123

F6RQ08              	100.00%		L0PAF2              	100.00%
F6S146              	11.74%		
Bootstrap support for F6RQ08 as seed ortholog is 100%.
Bootstrap support for L0PAF2 as seed ortholog is 100%.

Group of orthologs #947. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 P.jiroveci:123

F6U5E5              	100.00%		L0PHM1              	100.00%
Bootstrap support for F6U5E5 as seed ortholog is 100%.
Bootstrap support for L0PHM1 as seed ortholog is 100%.

Group of orthologs #948. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:82

H2XJN3              	100.00%		L0PA67              	100.00%
Bootstrap support for H2XJN3 as seed ortholog is 99%.
Bootstrap support for L0PA67 as seed ortholog is 99%.

Group of orthologs #949. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.jiroveci:122

F6PH72              	100.00%		L0PHR8              	100.00%
Bootstrap support for F6PH72 as seed ortholog is 100%.
Bootstrap support for L0PHR8 as seed ortholog is 100%.

Group of orthologs #950. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:122

F6U182              	100.00%		L0PG59              	100.00%
Bootstrap support for F6U182 as seed ortholog is 99%.
Bootstrap support for L0PG59 as seed ortholog is 100%.

Group of orthologs #951. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 P.jiroveci:122

F7AI05              	100.00%		L0PFV4              	100.00%
Bootstrap support for F7AI05 as seed ortholog is 100%.
Bootstrap support for L0PFV4 as seed ortholog is 100%.

Group of orthologs #952. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.jiroveci:121

F6QSH0              	100.00%		L0P7V8              	100.00%
Bootstrap support for F6QSH0 as seed ortholog is 100%.
Bootstrap support for L0P7V8 as seed ortholog is 100%.

Group of orthologs #953. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.jiroveci:121

F6QBK7              	100.00%		L0PEC9              	100.00%
Bootstrap support for F6QBK7 as seed ortholog is 100%.
Bootstrap support for L0PEC9 as seed ortholog is 100%.

Group of orthologs #954. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.jiroveci:121

F6RXW9              	100.00%		L0PEI9              	100.00%
Bootstrap support for F6RXW9 as seed ortholog is 100%.
Bootstrap support for L0PEI9 as seed ortholog is 100%.

Group of orthologs #955. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.jiroveci:121

F6WUC3              	100.00%		L0PCC0              	100.00%
Bootstrap support for F6WUC3 as seed ortholog is 100%.
Bootstrap support for L0PCC0 as seed ortholog is 100%.

Group of orthologs #956. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 P.jiroveci:121

F6W0T2              	100.00%		L0PEB3              	100.00%
Bootstrap support for F6W0T2 as seed ortholog is 100%.
Bootstrap support for L0PEB3 as seed ortholog is 100%.

Group of orthologs #957. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 P.jiroveci:120

F6ZZX7              	100.00%		L0PF42              	100.00%
                    	       		L0PD01              	98.57%
Bootstrap support for F6ZZX7 as seed ortholog is 100%.
Bootstrap support for L0PF42 as seed ortholog is 100%.

Group of orthologs #958. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 P.jiroveci:120

F6RRL3              	100.00%		L0PBR1              	100.00%
Bootstrap support for F6RRL3 as seed ortholog is 100%.
Bootstrap support for L0PBR1 as seed ortholog is 100%.

Group of orthologs #959. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 P.jiroveci:120

F6X073              	100.00%		L0P7D7              	100.00%
Bootstrap support for F6X073 as seed ortholog is 100%.
Bootstrap support for L0P7D7 as seed ortholog is 100%.

Group of orthologs #960. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 P.jiroveci:120

F6WRC9              	100.00%		L0PBH3              	100.00%
Bootstrap support for F6WRC9 as seed ortholog is 100%.
Bootstrap support for L0PBH3 as seed ortholog is 100%.

Group of orthologs #961. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:14 P.jiroveci:120

H2Y1N7              	100.00%		L0PF58              	100.00%
Bootstrap support for H2Y1N7 as seed ortholog is 68%.
Alternative seed ortholog is F6RM35 (14 bits away from this cluster)
Bootstrap support for L0PF58 as seed ortholog is 100%.

Group of orthologs #962. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:119

F6PK54              	100.00%		L0PD70              	100.00%
                    	       		L0P9Q7              	83.00%
Bootstrap support for F6PK54 as seed ortholog is 100%.
Bootstrap support for L0PD70 as seed ortholog is 100%.

Group of orthologs #963. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:119

F7B4Q5              	100.00%		L0P9W5              	100.00%
Bootstrap support for F7B4Q5 as seed ortholog is 100%.
Bootstrap support for L0P9W5 as seed ortholog is 100%.

Group of orthologs #964. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:119

F7ASX2              	100.00%		L0PF45              	100.00%
Bootstrap support for F7ASX2 as seed ortholog is 100%.
Bootstrap support for L0PF45 as seed ortholog is 100%.

Group of orthologs #965. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:119

F7AEK6              	100.00%		L0PIT4              	100.00%
Bootstrap support for F7AEK6 as seed ortholog is 100%.
Bootstrap support for L0PIT4 as seed ortholog is 100%.

Group of orthologs #966. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:119

H2XLA2              	100.00%		L0PC08              	100.00%
Bootstrap support for H2XLA2 as seed ortholog is 100%.
Bootstrap support for L0PC08 as seed ortholog is 100%.

Group of orthologs #967. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 P.jiroveci:119

H2XSZ1              	100.00%		L0P9A1              	100.00%
Bootstrap support for H2XSZ1 as seed ortholog is 100%.
Bootstrap support for L0P9A1 as seed ortholog is 100%.

Group of orthologs #968. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.jiroveci:118

F6XFM9              	100.00%		L0P9S9              	100.00%
F6TA22              	36.14%		L0PDT3              	44.57%
Bootstrap support for F6XFM9 as seed ortholog is 82%.
Bootstrap support for L0P9S9 as seed ortholog is 100%.

Group of orthologs #969. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6V2A4              	100.00%		L0P9Q9              	100.00%
F6WAB5              	16.62%		
Bootstrap support for F6V2A4 as seed ortholog is 100%.
Bootstrap support for L0P9Q9 as seed ortholog is 100%.

Group of orthologs #970. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6PJU1              	100.00%		L0PG78              	100.00%
Bootstrap support for F6PJU1 as seed ortholog is 100%.
Bootstrap support for L0PG78 as seed ortholog is 100%.

Group of orthologs #971. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:11 P.jiroveci:118

F6UNM5              	100.00%		L0P9Y3              	100.00%
Bootstrap support for F6UNM5 as seed ortholog is 34%.
Alternative seed ortholog is F6X134 (11 bits away from this cluster)
Bootstrap support for L0P9Y3 as seed ortholog is 100%.

Group of orthologs #972. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6RVB8              	100.00%		L0PIR4              	100.00%
Bootstrap support for F6RVB8 as seed ortholog is 100%.
Bootstrap support for L0PIR4 as seed ortholog is 100%.

Group of orthologs #973. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6X2Y1              	100.00%		L0P8M3              	100.00%
Bootstrap support for F6X2Y1 as seed ortholog is 100%.
Bootstrap support for L0P8M3 as seed ortholog is 100%.

Group of orthologs #974. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6V7G7              	100.00%		L0PEP9              	100.00%
Bootstrap support for F6V7G7 as seed ortholog is 100%.
Bootstrap support for L0PEP9 as seed ortholog is 100%.

Group of orthologs #975. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6Y043              	100.00%		L0PFB0              	100.00%
Bootstrap support for F6Y043 as seed ortholog is 100%.
Bootstrap support for L0PFB0 as seed ortholog is 100%.

Group of orthologs #976. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6XVH7              	100.00%		L0PFQ7              	100.00%
Bootstrap support for F6XVH7 as seed ortholog is 100%.
Bootstrap support for L0PFQ7 as seed ortholog is 100%.

Group of orthologs #977. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F6Y3X0              	100.00%		L0PFG8              	100.00%
Bootstrap support for F6Y3X0 as seed ortholog is 100%.
Bootstrap support for L0PFG8 as seed ortholog is 100%.

Group of orthologs #978. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 P.jiroveci:118

F7AUL7              	100.00%		L0P9L8              	100.00%
Bootstrap support for F7AUL7 as seed ortholog is 100%.
Bootstrap support for L0P9L8 as seed ortholog is 100%.

Group of orthologs #979. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 P.jiroveci:117

Q4H2R5              	100.00%		L0PF16              	100.00%
Bootstrap support for Q4H2R5 as seed ortholog is 100%.
Bootstrap support for L0PF16 as seed ortholog is 100%.

Group of orthologs #980. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 P.jiroveci:116

F6SV73              	100.00%		L0PE03              	100.00%
Bootstrap support for F6SV73 as seed ortholog is 100%.
Bootstrap support for L0PE03 as seed ortholog is 100%.

Group of orthologs #981. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:21 P.jiroveci:65

F6TE72              	100.00%		L0PGL7              	100.00%
Bootstrap support for F6TE72 as seed ortholog is 76%.
Bootstrap support for L0PGL7 as seed ortholog is 98%.

Group of orthologs #982. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 P.jiroveci:116

F7A3V9              	100.00%		L0PFR7              	100.00%
Bootstrap support for F7A3V9 as seed ortholog is 100%.
Bootstrap support for L0PFR7 as seed ortholog is 100%.

Group of orthologs #983. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 P.jiroveci:116

H2XKF1              	100.00%		L0PG04              	100.00%
Bootstrap support for H2XKF1 as seed ortholog is 100%.
Bootstrap support for L0PG04 as seed ortholog is 100%.

Group of orthologs #984. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:114

F6TXH8              	100.00%		L0PE21              	100.00%
F6RY16              	26.59%		
F6ZT48              	23.12%		
F6WMS1              	19.27%		
F6WMR0              	11.75%		
Bootstrap support for F6TXH8 as seed ortholog is 96%.
Bootstrap support for L0PE21 as seed ortholog is 100%.

Group of orthologs #985. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.jiroveci:114

H2Y2E7              	100.00%		L0P7L2              	100.00%
                    	       		L0PFZ6              	100.00%
Bootstrap support for H2Y2E7 as seed ortholog is 94%.
Bootstrap support for L0P7L2 as seed ortholog is 100%.
Bootstrap support for L0PFZ6 as seed ortholog is 100%.

Group of orthologs #986. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 P.jiroveci:114

F6VG38              	100.00%		L0P8I2              	100.00%
Bootstrap support for F6VG38 as seed ortholog is 81%.
Bootstrap support for L0P8I2 as seed ortholog is 100%.

Group of orthologs #987. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 P.jiroveci:114

F6X3V2              	100.00%		L0PCA3              	100.00%
Bootstrap support for F6X3V2 as seed ortholog is 100%.
Bootstrap support for L0PCA3 as seed ortholog is 100%.

Group of orthologs #988. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:114

F6ZF76              	100.00%		L0PAK0              	100.00%
Bootstrap support for F6ZF76 as seed ortholog is 99%.
Bootstrap support for L0PAK0 as seed ortholog is 100%.

Group of orthologs #989. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:41 P.jiroveci:114

F6ZUK0              	100.00%		L0PAS1              	100.00%
Bootstrap support for F6ZUK0 as seed ortholog is 89%.
Bootstrap support for L0PAS1 as seed ortholog is 100%.

Group of orthologs #990. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 P.jiroveci:114

H2Y1Y8              	100.00%		L0PCA8              	100.00%
Bootstrap support for H2Y1Y8 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #991. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

F6QTI2              	100.00%		L0PG84              	100.00%
Bootstrap support for F6QTI2 as seed ortholog is 100%.
Bootstrap support for L0PG84 as seed ortholog is 100%.

Group of orthologs #992. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

F6VKZ4              	100.00%		L0PEV4              	100.00%
Bootstrap support for F6VKZ4 as seed ortholog is 100%.
Bootstrap support for L0PEV4 as seed ortholog is 100%.

Group of orthologs #993. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

F6WNH2              	100.00%		L0PFL0              	100.00%
Bootstrap support for F6WNH2 as seed ortholog is 100%.
Bootstrap support for L0PFL0 as seed ortholog is 100%.

Group of orthologs #994. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

F6YVQ1              	100.00%		L0PB27              	100.00%
Bootstrap support for F6YVQ1 as seed ortholog is 100%.
Bootstrap support for L0PB27 as seed ortholog is 100%.

Group of orthologs #995. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

F6ZTJ9              	100.00%		L0P9V3              	100.00%
Bootstrap support for F6ZTJ9 as seed ortholog is 100%.
Bootstrap support for L0P9V3 as seed ortholog is 100%.

Group of orthologs #996. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 P.jiroveci:113

H2XYG3              	100.00%		L0P9D6              	100.00%
Bootstrap support for H2XYG3 as seed ortholog is 100%.
Bootstrap support for L0P9D6 as seed ortholog is 100%.

Group of orthologs #997. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 P.jiroveci:112

F6V437              	100.00%		L0PFD1              	100.00%
Bootstrap support for F6V437 as seed ortholog is 97%.
Bootstrap support for L0PFD1 as seed ortholog is 100%.

Group of orthologs #998. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.jiroveci:111

H2XLZ4              	100.00%		L0PF89              	100.00%
Q4H3J7              	6.27%		
Bootstrap support for H2XLZ4 as seed ortholog is 100%.
Bootstrap support for L0PF89 as seed ortholog is 100%.

Group of orthologs #999. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.jiroveci:111

F7BHR3              	100.00%		L0PCI2              	100.00%
Bootstrap support for F7BHR3 as seed ortholog is 100%.
Bootstrap support for L0PCI2 as seed ortholog is 100%.

Group of orthologs #1000. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.jiroveci:111

H2XV86              	100.00%		L0P9M6              	100.00%
Bootstrap support for H2XV86 as seed ortholog is 100%.
Bootstrap support for L0P9M6 as seed ortholog is 100%.

Group of orthologs #1001. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 P.jiroveci:61

H2XY81              	100.00%		L0PD19              	100.00%
Bootstrap support for H2XY81 as seed ortholog is 100%.
Bootstrap support for L0PD19 as seed ortholog is 99%.

Group of orthologs #1002. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.jiroveci:110

H2Y0N2              	100.00%		L0P8Z8              	100.00%
                    	       		L0PFN6              	79.40%
Bootstrap support for H2Y0N2 as seed ortholog is 100%.
Bootstrap support for L0P8Z8 as seed ortholog is 100%.

Group of orthologs #1003. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.jiroveci:110

F6PMD1              	100.00%		L0P997              	100.00%
Bootstrap support for F6PMD1 as seed ortholog is 100%.
Bootstrap support for L0P997 as seed ortholog is 100%.

Group of orthologs #1004. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.jiroveci:110

F6PPJ7              	100.00%		L0PCY1              	100.00%
Bootstrap support for F6PPJ7 as seed ortholog is 100%.
Bootstrap support for L0PCY1 as seed ortholog is 100%.

Group of orthologs #1005. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.jiroveci:110

F6W132              	100.00%		L0P8R1              	100.00%
Bootstrap support for F6W132 as seed ortholog is 100%.
Bootstrap support for L0P8R1 as seed ortholog is 100%.

Group of orthologs #1006. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.jiroveci:110

F6YUN5              	100.00%		L0PAR6              	100.00%
Bootstrap support for F6YUN5 as seed ortholog is 100%.
Bootstrap support for L0PAR6 as seed ortholog is 100%.

Group of orthologs #1007. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 P.jiroveci:110

F6XR12              	100.00%		L0PEZ4              	100.00%
Bootstrap support for F6XR12 as seed ortholog is 100%.
Bootstrap support for L0PEZ4 as seed ortholog is 100%.

Group of orthologs #1008. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

H2XRT6              	100.00%		L0PF86              	100.00%
                    	       		L0PC10              	85.34%
Bootstrap support for H2XRT6 as seed ortholog is 100%.
Bootstrap support for L0PF86 as seed ortholog is 100%.

Group of orthologs #1009. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6RRD5              	100.00%		L0P8J7              	100.00%
Bootstrap support for F6RRD5 as seed ortholog is 100%.
Bootstrap support for L0P8J7 as seed ortholog is 100%.

Group of orthologs #1010. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6RHG2              	100.00%		L0PFU9              	100.00%
Bootstrap support for F6RHG2 as seed ortholog is 100%.
Bootstrap support for L0PFU9 as seed ortholog is 100%.

Group of orthologs #1011. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6UA18              	100.00%		L0PCV9              	100.00%
Bootstrap support for F6UA18 as seed ortholog is 100%.
Bootstrap support for L0PCV9 as seed ortholog is 100%.

Group of orthologs #1012. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6T052              	100.00%		L0PGF4              	100.00%
Bootstrap support for F6T052 as seed ortholog is 100%.
Bootstrap support for L0PGF4 as seed ortholog is 100%.

Group of orthologs #1013. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6W7H5              	100.00%		L0PAT4              	100.00%
Bootstrap support for F6W7H5 as seed ortholog is 100%.
Bootstrap support for L0PAT4 as seed ortholog is 100%.

Group of orthologs #1014. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6YJB7              	100.00%		L0P8Q1              	100.00%
Bootstrap support for F6YJB7 as seed ortholog is 100%.
Bootstrap support for L0P8Q1 as seed ortholog is 100%.

Group of orthologs #1015. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

F6WYJ4              	100.00%		L0PDD8              	100.00%
Bootstrap support for F6WYJ4 as seed ortholog is 100%.
Bootstrap support for L0PDD8 as seed ortholog is 100%.

Group of orthologs #1016. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:109

F7AKT1              	100.00%		L0PBU1              	100.00%
Bootstrap support for F7AKT1 as seed ortholog is 99%.
Bootstrap support for L0PBU1 as seed ortholog is 100%.

Group of orthologs #1017. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

H2XWG7              	100.00%		L0PCX0              	100.00%
Bootstrap support for H2XWG7 as seed ortholog is 100%.
Bootstrap support for L0PCX0 as seed ortholog is 100%.

Group of orthologs #1018. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 P.jiroveci:109

H2XUU5              	100.00%		L0PHN6              	100.00%
Bootstrap support for H2XUU5 as seed ortholog is 100%.
Bootstrap support for L0PHN6 as seed ortholog is 100%.

Group of orthologs #1019. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 P.jiroveci:108

F6VQB3              	100.00%		L0PA27              	100.00%
H2XML0              	53.78%		
Bootstrap support for F6VQB3 as seed ortholog is 100%.
Bootstrap support for L0PA27 as seed ortholog is 100%.

Group of orthologs #1020. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:39 P.jiroveci:108

F6Y4F7              	100.00%		L0PGM7              	100.00%
                    	       		L0PGY6              	94.81%
Bootstrap support for F6Y4F7 as seed ortholog is 87%.
Bootstrap support for L0PGM7 as seed ortholog is 100%.

Group of orthologs #1021. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 P.jiroveci:108

F6ZVS4              	100.00%		L0PFC4              	100.00%
F6UWB9              	30.37%		
Bootstrap support for F6ZVS4 as seed ortholog is 100%.
Bootstrap support for L0PFC4 as seed ortholog is 100%.

Group of orthologs #1022. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 P.jiroveci:108

F6S014              	100.00%		L0P7N9              	100.00%
Bootstrap support for F6S014 as seed ortholog is 100%.
Bootstrap support for L0P7N9 as seed ortholog is 100%.

Group of orthologs #1023. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 P.jiroveci:108

F6XTV8              	100.00%		L0P6Z5              	100.00%
Bootstrap support for F6XTV8 as seed ortholog is 100%.
Bootstrap support for L0P6Z5 as seed ortholog is 100%.

Group of orthologs #1024. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

F6S8X6              	100.00%		L0PCZ2              	100.00%
F6TP12              	100.00%		
Bootstrap support for F6S8X6 as seed ortholog is 100%.
Bootstrap support for F6TP12 as seed ortholog is 100%.
Bootstrap support for L0PCZ2 as seed ortholog is 100%.

Group of orthologs #1025. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:31 P.jiroveci:106

F6Y3T4              	100.00%		L0PA43              	100.00%
F6Y3U3              	27.76%		
Bootstrap support for F6Y3T4 as seed ortholog is 94%.
Bootstrap support for L0PA43 as seed ortholog is 100%.

Group of orthologs #1026. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

F6TUV6              	100.00%		L0PEF4              	100.00%
Bootstrap support for F6TUV6 as seed ortholog is 100%.
Bootstrap support for L0PEF4 as seed ortholog is 100%.

Group of orthologs #1027. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

F6X1E1              	100.00%		L0PDV9              	100.00%
Bootstrap support for F6X1E1 as seed ortholog is 100%.
Bootstrap support for L0PDV9 as seed ortholog is 100%.

Group of orthologs #1028. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

H2XKA1              	100.00%		L0P9Z6              	100.00%
Bootstrap support for H2XKA1 as seed ortholog is 100%.
Bootstrap support for L0P9Z6 as seed ortholog is 100%.

Group of orthologs #1029. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

H2XPN7              	100.00%		L0P6Z0              	100.00%
Bootstrap support for H2XPN7 as seed ortholog is 100%.
Bootstrap support for L0P6Z0 as seed ortholog is 100%.

Group of orthologs #1030. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

H2XLK9              	100.00%		L0PEZ7              	100.00%
Bootstrap support for H2XLK9 as seed ortholog is 100%.
Bootstrap support for L0PEZ7 as seed ortholog is 100%.

Group of orthologs #1031. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

H2XU65              	100.00%		L0P7T7              	100.00%
Bootstrap support for H2XU65 as seed ortholog is 100%.
Bootstrap support for L0P7T7 as seed ortholog is 100%.

Group of orthologs #1032. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

H2XX64              	100.00%		L0P701              	100.00%
Bootstrap support for H2XX64 as seed ortholog is 100%.
Bootstrap support for L0P701 as seed ortholog is 100%.

Group of orthologs #1033. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 P.jiroveci:106

H2XSI3              	100.00%		L0PD86              	100.00%
Bootstrap support for H2XSI3 as seed ortholog is 65%.
Alternative seed ortholog is F6W8L4 (9 bits away from this cluster)
Bootstrap support for L0PD86 as seed ortholog is 100%.

Group of orthologs #1034. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 P.jiroveci:106

H2XTQ3              	100.00%		L0PGR9              	100.00%
Bootstrap support for H2XTQ3 as seed ortholog is 100%.
Bootstrap support for L0PGR9 as seed ortholog is 100%.

Group of orthologs #1035. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 P.jiroveci:105

F6YE24              	100.00%		L0P935              	100.00%
Bootstrap support for F6YE24 as seed ortholog is 100%.
Bootstrap support for L0P935 as seed ortholog is 100%.

Group of orthologs #1036. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.jiroveci:42

H2XZJ2              	100.00%		L0PBE1              	100.00%
F6W6Z9              	32.67%		
F6VT59              	21.51%		
Bootstrap support for H2XZJ2 as seed ortholog is 99%.
Bootstrap support for L0PBE1 as seed ortholog is 97%.

Group of orthologs #1037. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 P.jiroveci:104

F6R999              	100.00%		L0PF37              	100.00%
Bootstrap support for F6R999 as seed ortholog is 100%.
Bootstrap support for L0PF37 as seed ortholog is 100%.

Group of orthologs #1038. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 P.jiroveci:104

F6T1Y9              	100.00%		L0PGB3              	100.00%
Bootstrap support for F6T1Y9 as seed ortholog is 100%.
Bootstrap support for L0PGB3 as seed ortholog is 100%.

Group of orthologs #1039. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 P.jiroveci:104

F6ZQG8              	100.00%		L0PF00              	100.00%
Bootstrap support for F6ZQG8 as seed ortholog is 100%.
Bootstrap support for L0PF00 as seed ortholog is 100%.

Group of orthologs #1040. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:8 P.jiroveci:104

H2XLJ6              	100.00%		L0P9F8              	100.00%
Bootstrap support for H2XLJ6 as seed ortholog is 57%.
Alternative seed ortholog is F6VH85 (8 bits away from this cluster)
Bootstrap support for L0P9F8 as seed ortholog is 100%.

Group of orthologs #1041. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 P.jiroveci:104

F7BPM3              	100.00%		L0PD60              	100.00%
Bootstrap support for F7BPM3 as seed ortholog is 100%.
Bootstrap support for L0PD60 as seed ortholog is 100%.

Group of orthologs #1042. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.jiroveci:103

F6W0A5              	100.00%		L0P7K8              	100.00%
Bootstrap support for F6W0A5 as seed ortholog is 100%.
Bootstrap support for L0P7K8 as seed ortholog is 100%.

Group of orthologs #1043. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 P.jiroveci:103

F7A2R6              	100.00%		L0PCG6              	100.00%
Bootstrap support for F7A2R6 as seed ortholog is 100%.
Bootstrap support for L0PCG6 as seed ortholog is 100%.

Group of orthologs #1044. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:102

F6S855              	100.00%		L0P982              	100.00%
F6XUY3              	68.93%		
F6S880              	68.54%		
F7BGH4              	17.67%		
Bootstrap support for F6S855 as seed ortholog is 98%.
Bootstrap support for L0P982 as seed ortholog is 100%.

Group of orthologs #1045. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.jiroveci:102

F6TDH1              	100.00%		L0PG28              	100.00%
Bootstrap support for F6TDH1 as seed ortholog is 100%.
Bootstrap support for L0PG28 as seed ortholog is 100%.

Group of orthologs #1046. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.jiroveci:102

H2Y1V2              	100.00%		L0PA68              	100.00%
Bootstrap support for H2Y1V2 as seed ortholog is 100%.
Bootstrap support for L0PA68 as seed ortholog is 100%.

Group of orthologs #1047. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 P.jiroveci:102

H2XWT1              	100.00%		L0PFH1              	100.00%
Bootstrap support for H2XWT1 as seed ortholog is 100%.
Bootstrap support for L0PFH1 as seed ortholog is 100%.

Group of orthologs #1048. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 P.jiroveci:101

F6R4H7              	100.00%		L0PFV2              	100.00%
Bootstrap support for F6R4H7 as seed ortholog is 100%.
Bootstrap support for L0PFV2 as seed ortholog is 100%.

Group of orthologs #1049. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:101

F6WCB0              	100.00%		L0PFQ6              	100.00%
Bootstrap support for F6WCB0 as seed ortholog is 93%.
Bootstrap support for L0PFQ6 as seed ortholog is 100%.

Group of orthologs #1050. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 P.jiroveci:101

F7BQ69              	100.00%		L0PGP3              	100.00%
Bootstrap support for F7BQ69 as seed ortholog is 100%.
Bootstrap support for L0PGP3 as seed ortholog is 100%.

Group of orthologs #1051. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 P.jiroveci:101

H2XXI7              	100.00%		L0PB99              	100.00%
Bootstrap support for H2XXI7 as seed ortholog is 100%.
Bootstrap support for L0PB99 as seed ortholog is 100%.

Group of orthologs #1052. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 P.jiroveci:101

H2XZI3              	100.00%		L0PEE1              	100.00%
Bootstrap support for H2XZI3 as seed ortholog is 100%.
Bootstrap support for L0PEE1 as seed ortholog is 100%.

Group of orthologs #1053. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.jiroveci:100

F6QLU5              	100.00%		L0PCI6              	100.00%
Bootstrap support for F6QLU5 as seed ortholog is 100%.
Bootstrap support for L0PCI6 as seed ortholog is 100%.

Group of orthologs #1054. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:100

F6QW72              	100.00%		L0PFM7              	100.00%
Bootstrap support for F6QW72 as seed ortholog is 97%.
Bootstrap support for L0PFM7 as seed ortholog is 100%.

Group of orthologs #1055. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.jiroveci:100

F6U3F2              	100.00%		L0PD96              	100.00%
Bootstrap support for F6U3F2 as seed ortholog is 100%.
Bootstrap support for L0PD96 as seed ortholog is 100%.

Group of orthologs #1056. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.jiroveci:100

F6U1Q3              	100.00%		L0PE76              	100.00%
Bootstrap support for F6U1Q3 as seed ortholog is 100%.
Bootstrap support for L0PE76 as seed ortholog is 100%.

Group of orthologs #1057. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 P.jiroveci:100

F7ASB0              	100.00%		L0PD51              	100.00%
Bootstrap support for F7ASB0 as seed ortholog is 100%.
Bootstrap support for L0PD51 as seed ortholog is 100%.

Group of orthologs #1058. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

F6TUU8              	100.00%		L0P999              	100.00%
                    	       		L0PEQ2              	61.45%
Bootstrap support for F6TUU8 as seed ortholog is 100%.
Bootstrap support for L0P999 as seed ortholog is 100%.

Group of orthologs #1059. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

H2XNW6              	100.00%		L0P7T1              	100.00%
H2XLB1              	35.92%		
Bootstrap support for H2XNW6 as seed ortholog is 100%.
Bootstrap support for L0P7T1 as seed ortholog is 100%.

Group of orthologs #1060. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

F6Q4X5              	100.00%		L0P7G9              	100.00%
Bootstrap support for F6Q4X5 as seed ortholog is 100%.
Bootstrap support for L0P7G9 as seed ortholog is 100%.

Group of orthologs #1061. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

F6PZM1              	100.00%		L0PCI9              	100.00%
Bootstrap support for F6PZM1 as seed ortholog is 100%.
Bootstrap support for L0PCI9 as seed ortholog is 100%.

Group of orthologs #1062. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 P.jiroveci:99

F6QC45              	100.00%		L0PDF0              	100.00%
Bootstrap support for F6QC45 as seed ortholog is 94%.
Bootstrap support for L0PDF0 as seed ortholog is 100%.

Group of orthologs #1063. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:30

F6QSC7              	100.00%		L0PFG2              	100.00%
Bootstrap support for F6QSC7 as seed ortholog is 100%.
Bootstrap support for L0PFG2 as seed ortholog is 86%.

Group of orthologs #1064. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

F7B7K2              	100.00%		L0P9F1              	100.00%
Bootstrap support for F7B7K2 as seed ortholog is 100%.
Bootstrap support for L0P9F1 as seed ortholog is 100%.

Group of orthologs #1065. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

F7AUH4              	100.00%		L0PCZ5              	100.00%
Bootstrap support for F7AUH4 as seed ortholog is 100%.
Bootstrap support for L0PCZ5 as seed ortholog is 100%.

Group of orthologs #1066. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

F7BBF0              	100.00%		L0PBL2              	100.00%
Bootstrap support for F7BBF0 as seed ortholog is 100%.
Bootstrap support for L0PBL2 as seed ortholog is 100%.

Group of orthologs #1067. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 P.jiroveci:99

H2XZV1              	100.00%		L0PAS5              	100.00%
Bootstrap support for H2XZV1 as seed ortholog is 100%.
Bootstrap support for L0PAS5 as seed ortholog is 100%.

Group of orthologs #1068. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.jiroveci:98

F6VXS0              	100.00%		L0PFG4              	100.00%
                    	       		L0P939              	39.38%
Bootstrap support for F6VXS0 as seed ortholog is 100%.
Bootstrap support for L0PFG4 as seed ortholog is 100%.

Group of orthologs #1069. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.jiroveci:98

F6RCD1              	100.00%		L0P7Q2              	100.00%
Bootstrap support for F6RCD1 as seed ortholog is 100%.
Bootstrap support for L0P7Q2 as seed ortholog is 100%.

Group of orthologs #1070. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.jiroveci:98

F6PHZ4              	100.00%		L0PE36              	100.00%
Bootstrap support for F6PHZ4 as seed ortholog is 100%.
Bootstrap support for L0PE36 as seed ortholog is 100%.

Group of orthologs #1071. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 P.jiroveci:47

F6SPH4              	100.00%		L0PD45              	100.00%
Bootstrap support for F6SPH4 as seed ortholog is 100%.
Bootstrap support for L0PD45 as seed ortholog is 99%.

Group of orthologs #1072. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:31 P.jiroveci:97

F6RZE8              	100.00%		L0PDE3              	100.00%
Bootstrap support for F6RZE8 as seed ortholog is 83%.
Bootstrap support for L0PDE3 as seed ortholog is 100%.

Group of orthologs #1073. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.jiroveci:97

F6WPK3              	100.00%		L0PFF4              	100.00%
Bootstrap support for F6WPK3 as seed ortholog is 100%.
Bootstrap support for L0PFF4 as seed ortholog is 100%.

Group of orthologs #1074. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.jiroveci:97

F7BMH5              	100.00%		L0PCX7              	100.00%
Bootstrap support for F7BMH5 as seed ortholog is 100%.
Bootstrap support for L0PCX7 as seed ortholog is 100%.

Group of orthologs #1075. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.jiroveci:97

F7BFG7              	100.00%		L0PE40              	100.00%
Bootstrap support for F7BFG7 as seed ortholog is 100%.
Bootstrap support for L0PE40 as seed ortholog is 100%.

Group of orthologs #1076. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.jiroveci:97

H2XTC9              	100.00%		L0PB42              	100.00%
Bootstrap support for H2XTC9 as seed ortholog is 100%.
Bootstrap support for L0PB42 as seed ortholog is 100%.

Group of orthologs #1077. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.jiroveci:97

H2XWE7              	100.00%		L0PG13              	100.00%
Bootstrap support for H2XWE7 as seed ortholog is 100%.
Bootstrap support for L0PG13 as seed ortholog is 100%.

Group of orthologs #1078. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 P.jiroveci:97

Q4H372              	100.00%		L0PF90              	100.00%
Bootstrap support for Q4H372 as seed ortholog is 100%.
Bootstrap support for L0PF90 as seed ortholog is 100%.

Group of orthologs #1079. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:96

F6R2C6              	100.00%		L0PEF7              	100.00%
Bootstrap support for F6R2C6 as seed ortholog is 100%.
Bootstrap support for L0PEF7 as seed ortholog is 100%.

Group of orthologs #1080. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:96

F6V2B2              	100.00%		L0P6X4              	100.00%
Bootstrap support for F6V2B2 as seed ortholog is 100%.
Bootstrap support for L0P6X4 as seed ortholog is 100%.

Group of orthologs #1081. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:96

H2XUI3              	100.00%		L0P8J6              	100.00%
Bootstrap support for H2XUI3 as seed ortholog is 100%.
Bootstrap support for L0P8J6 as seed ortholog is 100%.

Group of orthologs #1082. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:96

H2XRI7              	100.00%		L0PDI3              	100.00%
Bootstrap support for H2XRI7 as seed ortholog is 100%.
Bootstrap support for L0PDI3 as seed ortholog is 100%.

Group of orthologs #1083. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:96

H2XUK0              	100.00%		L0PBX3              	100.00%
Bootstrap support for H2XUK0 as seed ortholog is 100%.
Bootstrap support for L0PBX3 as seed ortholog is 100%.

Group of orthologs #1084. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 P.jiroveci:96

H2XWC1              	100.00%		L0PE10              	100.00%
Bootstrap support for H2XWC1 as seed ortholog is 100%.
Bootstrap support for L0PE10 as seed ortholog is 100%.

Group of orthologs #1085. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 P.jiroveci:94

F6T7B1              	100.00%		L0PA07              	100.00%
Bootstrap support for F6T7B1 as seed ortholog is 67%.
Alternative seed ortholog is H2XVS6 (12 bits away from this cluster)
Bootstrap support for L0PA07 as seed ortholog is 100%.

Group of orthologs #1086. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.jiroveci:94

F6USY8              	100.00%		L0P8J9              	100.00%
Bootstrap support for F6USY8 as seed ortholog is 100%.
Bootstrap support for L0P8J9 as seed ortholog is 100%.

Group of orthologs #1087. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.jiroveci:94

F6XR53              	100.00%		L0P9X0              	100.00%
Bootstrap support for F6XR53 as seed ortholog is 100%.
Bootstrap support for L0P9X0 as seed ortholog is 100%.

Group of orthologs #1088. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.jiroveci:94

F6YMZ5              	100.00%		L0P8G4              	100.00%
Bootstrap support for F6YMZ5 as seed ortholog is 100%.
Bootstrap support for L0P8G4 as seed ortholog is 100%.

Group of orthologs #1089. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.jiroveci:94

F7ANQ7              	100.00%		L0PAW7              	100.00%
Bootstrap support for F7ANQ7 as seed ortholog is 100%.
Bootstrap support for L0PAW7 as seed ortholog is 100%.

Group of orthologs #1090. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 P.jiroveci:94

F7B4X6              	100.00%		L0PFM0              	100.00%
Bootstrap support for F7B4X6 as seed ortholog is 100%.
Bootstrap support for L0PFM0 as seed ortholog is 100%.

Group of orthologs #1091. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:7 P.jiroveci:94

H2XQH7              	100.00%		L0PCM4              	100.00%
Bootstrap support for H2XQH7 as seed ortholog is 46%.
Alternative seed ortholog is F6TNN9 (7 bits away from this cluster)
Bootstrap support for L0PCM4 as seed ortholog is 100%.

Group of orthologs #1092. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.jiroveci:93

F6RRS1              	100.00%		L0PG49              	100.00%
                    	       		L0PEF9              	84.75%
Bootstrap support for F6RRS1 as seed ortholog is 100%.
Bootstrap support for L0PG49 as seed ortholog is 100%.

Group of orthologs #1093. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.jiroveci:93

F6TQ55              	100.00%		L0PHJ8              	100.00%
                    	       		L0P888              	60.71%
Bootstrap support for F6TQ55 as seed ortholog is 100%.
Bootstrap support for L0PHJ8 as seed ortholog is 100%.

Group of orthologs #1094. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:28 P.jiroveci:93

H2XT36              	100.00%		L0PA37              	100.00%
F7AK54              	5.88%		
Bootstrap support for H2XT36 as seed ortholog is 94%.
Bootstrap support for L0PA37 as seed ortholog is 100%.

Group of orthologs #1095. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.jiroveci:93

F6S9I2              	100.00%		L0PBA3              	100.00%
Bootstrap support for F6S9I2 as seed ortholog is 100%.
Bootstrap support for L0PBA3 as seed ortholog is 100%.

Group of orthologs #1096. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.jiroveci:93

F6RXS5              	100.00%		L0PDY2              	100.00%
Bootstrap support for F6RXS5 as seed ortholog is 93%.
Bootstrap support for L0PDY2 as seed ortholog is 100%.

Group of orthologs #1097. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.jiroveci:93

F6XZJ5              	100.00%		L0PDZ0              	100.00%
Bootstrap support for F6XZJ5 as seed ortholog is 100%.
Bootstrap support for L0PDZ0 as seed ortholog is 100%.

Group of orthologs #1098. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 P.jiroveci:93

H2XXT0              	100.00%		L0P9W7              	100.00%
Bootstrap support for H2XXT0 as seed ortholog is 100%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #1099. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:92

F6YAZ4              	100.00%		L0PBR7              	100.00%
                    	       		L0PC11              	27.08%
Bootstrap support for F6YAZ4 as seed ortholog is 100%.
Bootstrap support for L0PBR7 as seed ortholog is 100%.

Group of orthologs #1100. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:92

F6W282              	100.00%		L0PBX9              	100.00%
Bootstrap support for F6W282 as seed ortholog is 100%.
Bootstrap support for L0PBX9 as seed ortholog is 100%.

Group of orthologs #1101. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:92

F6WW70              	100.00%		L0PFX1              	100.00%
Bootstrap support for F6WW70 as seed ortholog is 100%.
Bootstrap support for L0PFX1 as seed ortholog is 100%.

Group of orthologs #1102. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:92

F7BA39              	100.00%		L0PAX2              	100.00%
Bootstrap support for F7BA39 as seed ortholog is 100%.
Bootstrap support for L0PAX2 as seed ortholog is 100%.

Group of orthologs #1103. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:92

F7AF59              	100.00%		L0PFF3              	100.00%
Bootstrap support for F7AF59 as seed ortholog is 100%.
Bootstrap support for L0PFF3 as seed ortholog is 100%.

Group of orthologs #1104. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 P.jiroveci:92

H2XPE3              	100.00%		L0PHQ1              	100.00%
Bootstrap support for H2XPE3 as seed ortholog is 100%.
Bootstrap support for L0PHQ1 as seed ortholog is 100%.

Group of orthologs #1105. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:91

F6PHR7              	100.00%		L0PD23              	100.00%
Bootstrap support for F6PHR7 as seed ortholog is 100%.
Bootstrap support for L0PD23 as seed ortholog is 100%.

Group of orthologs #1106. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:91

F6SST4              	100.00%		L0PHH5              	100.00%
Bootstrap support for F6SST4 as seed ortholog is 100%.
Bootstrap support for L0PHH5 as seed ortholog is 100%.

Group of orthologs #1107. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:91

H2XQ41              	100.00%		L0PDM8              	100.00%
Bootstrap support for H2XQ41 as seed ortholog is 100%.
Bootstrap support for L0PDM8 as seed ortholog is 100%.

Group of orthologs #1108. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:91

H2XUW4              	100.00%		L0PD30              	100.00%
Bootstrap support for H2XUW4 as seed ortholog is 100%.
Bootstrap support for L0PD30 as seed ortholog is 100%.

Group of orthologs #1109. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:14

H2XVX4              	100.00%		L0PEK0              	100.00%
Bootstrap support for H2XVX4 as seed ortholog is 100%.
Bootstrap support for L0PEK0 as seed ortholog is 69%.
Alternative seed ortholog is L0P9V0 (14 bits away from this cluster)

Group of orthologs #1110. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 P.jiroveci:27

H2Y2X6              	100.00%		L0PBZ3              	100.00%
Bootstrap support for H2Y2X6 as seed ortholog is 100%.
Bootstrap support for L0PBZ3 as seed ortholog is 90%.

Group of orthologs #1111. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 P.jiroveci:90

Q4H398              	100.00%		L0PCN8              	100.00%
F6S925              	39.49%		
F6S909              	33.28%		
Q4H396              	23.41%		
Bootstrap support for Q4H398 as seed ortholog is 100%.
Bootstrap support for L0PCN8 as seed ortholog is 100%.

Group of orthologs #1112. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 P.jiroveci:90

F6WFW0              	100.00%		L0PDD4              	100.00%
Bootstrap support for F6WFW0 as seed ortholog is 100%.
Bootstrap support for L0PDD4 as seed ortholog is 100%.

Group of orthologs #1113. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:89

F6X139              	100.00%		L0P838              	100.00%
F6X7G6              	24.37%		
Bootstrap support for F6X139 as seed ortholog is 100%.
Bootstrap support for L0P838 as seed ortholog is 100%.

Group of orthologs #1114. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:89

F6ZYA6              	100.00%		L0P990              	100.00%
Bootstrap support for F6ZYA6 as seed ortholog is 100%.
Bootstrap support for L0P990 as seed ortholog is 100%.

Group of orthologs #1115. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:89

F6YGM8              	100.00%		L0PER0              	100.00%
Bootstrap support for F6YGM8 as seed ortholog is 100%.
Bootstrap support for L0PER0 as seed ortholog is 100%.

Group of orthologs #1116. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:89

F7BEK1              	100.00%		L0P868              	100.00%
Bootstrap support for F7BEK1 as seed ortholog is 100%.
Bootstrap support for L0P868 as seed ortholog is 100%.

Group of orthologs #1117. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:17 P.jiroveci:89

H2XX49              	100.00%		L0PDW2              	100.00%
Bootstrap support for H2XX49 as seed ortholog is 67%.
Alternative seed ortholog is F6TR45 (17 bits away from this cluster)
Bootstrap support for L0PDW2 as seed ortholog is 100%.

Group of orthologs #1118. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 P.jiroveci:89

H2XVM5              	100.00%		L0PFM9              	100.00%
Bootstrap support for H2XVM5 as seed ortholog is 100%.
Bootstrap support for L0PFM9 as seed ortholog is 100%.

Group of orthologs #1119. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 P.jiroveci:88

F6QR63              	100.00%		L0PAD6              	100.00%
Bootstrap support for F6QR63 as seed ortholog is 100%.
Bootstrap support for L0PAD6 as seed ortholog is 100%.

Group of orthologs #1120. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 P.jiroveci:88

F6VGI1              	100.00%		L0PD56              	100.00%
Bootstrap support for F6VGI1 as seed ortholog is 100%.
Bootstrap support for L0PD56 as seed ortholog is 100%.

Group of orthologs #1121. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 P.jiroveci:88

F6ZRA2              	100.00%		L0PCB4              	100.00%
Bootstrap support for F6ZRA2 as seed ortholog is 100%.
Bootstrap support for L0PCB4 as seed ortholog is 100%.

Group of orthologs #1122. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.jiroveci:87

F6SN27              	100.00%		L0P8G8              	100.00%
Bootstrap support for F6SN27 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #1123. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.jiroveci:87

F6QGB8              	100.00%		L0PDQ8              	100.00%
Bootstrap support for F6QGB8 as seed ortholog is 100%.
Bootstrap support for L0PDQ8 as seed ortholog is 100%.

Group of orthologs #1124. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.jiroveci:87

F6ZIQ8              	100.00%		L0PAV4              	100.00%
Bootstrap support for F6ZIQ8 as seed ortholog is 100%.
Bootstrap support for L0PAV4 as seed ortholog is 100%.

Group of orthologs #1125. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 P.jiroveci:87

H2XZJ6              	100.00%		L0PFR5              	100.00%
Bootstrap support for H2XZJ6 as seed ortholog is 100%.
Bootstrap support for L0PFR5 as seed ortholog is 100%.

Group of orthologs #1126. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.jiroveci:86

F6YQB2              	100.00%		L0PFN7              	100.00%
Bootstrap support for F6YQB2 as seed ortholog is 100%.
Bootstrap support for L0PFN7 as seed ortholog is 100%.

Group of orthologs #1127. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:13 P.jiroveci:86

H2XTL6              	100.00%		L0PAT3              	100.00%
Bootstrap support for H2XTL6 as seed ortholog is 78%.
Bootstrap support for L0PAT3 as seed ortholog is 100%.

Group of orthologs #1128. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.jiroveci:86

H2Y026              	100.00%		L0PB39              	100.00%
Bootstrap support for H2Y026 as seed ortholog is 100%.
Bootstrap support for L0PB39 as seed ortholog is 100%.

Group of orthologs #1129. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 P.jiroveci:86

Q1RLC9              	100.00%		L0PFD0              	100.00%
Bootstrap support for Q1RLC9 as seed ortholog is 100%.
Bootstrap support for L0PFD0 as seed ortholog is 100%.

Group of orthologs #1130. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 P.jiroveci:85

F6WII1              	100.00%		L0PCC2              	100.00%
Bootstrap support for F6WII1 as seed ortholog is 100%.
Bootstrap support for L0PCC2 as seed ortholog is 100%.

Group of orthologs #1131. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:84

F6UCW1              	100.00%		L0PD85              	100.00%
                    	       		L0PGV7              	62.75%
Bootstrap support for F6UCW1 as seed ortholog is 100%.
Bootstrap support for L0PD85 as seed ortholog is 100%.

Group of orthologs #1132. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:13

F7ANZ8              	100.00%		L0P9G4              	100.00%
Bootstrap support for F7ANZ8 as seed ortholog is 100%.
Bootstrap support for L0P9G4 as seed ortholog is 26%.
Alternative seed ortholog is L0PF78 (13 bits away from this cluster)

Group of orthologs #1133. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:84

F7AX45              	100.00%		L0P8R9              	100.00%
Bootstrap support for F7AX45 as seed ortholog is 100%.
Bootstrap support for L0P8R9 as seed ortholog is 100%.

Group of orthologs #1134. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:84

H2XKS6              	100.00%		L0PCQ4              	100.00%
Bootstrap support for H2XKS6 as seed ortholog is 100%.
Bootstrap support for L0PCQ4 as seed ortholog is 100%.

Group of orthologs #1135. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:84

F7B6C9              	100.00%		L0PFT5              	100.00%
Bootstrap support for F7B6C9 as seed ortholog is 100%.
Bootstrap support for L0PFT5 as seed ortholog is 100%.

Group of orthologs #1136. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 P.jiroveci:84

H2Y184              	100.00%		L0PD90              	100.00%
Bootstrap support for H2Y184 as seed ortholog is 100%.
Bootstrap support for L0PD90 as seed ortholog is 100%.

Group of orthologs #1137. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:83

F6TIT1              	100.00%		L0P8W8              	100.00%
                    	       		L0P9K5              	56.70%
Bootstrap support for F6TIT1 as seed ortholog is 100%.
Bootstrap support for L0P8W8 as seed ortholog is 100%.

Group of orthologs #1138. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:83

F6XIG6              	100.00%		L0P883              	100.00%
Bootstrap support for F6XIG6 as seed ortholog is 100%.
Bootstrap support for L0P883 as seed ortholog is 100%.

Group of orthologs #1139. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:83

F7ATY3              	100.00%		L0PF82              	100.00%
Bootstrap support for F7ATY3 as seed ortholog is 100%.
Bootstrap support for L0PF82 as seed ortholog is 100%.

Group of orthologs #1140. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 P.jiroveci:83

H2XZ38              	100.00%		L0PEC4              	100.00%
Bootstrap support for H2XZ38 as seed ortholog is 100%.
Bootstrap support for L0PEC4 as seed ortholog is 100%.

Group of orthologs #1141. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 P.jiroveci:82

F6QW82              	100.00%		L0PF93              	100.00%
Bootstrap support for F6QW82 as seed ortholog is 100%.
Bootstrap support for L0PF93 as seed ortholog is 100%.

Group of orthologs #1142. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 P.jiroveci:82

F6Y321              	100.00%		L0PBQ7              	100.00%
Bootstrap support for F6Y321 as seed ortholog is 100%.
Bootstrap support for L0PBQ7 as seed ortholog is 100%.

Group of orthologs #1143. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:35 P.jiroveci:82

H2XLZ2              	100.00%		L0PBU9              	100.00%
Bootstrap support for H2XLZ2 as seed ortholog is 98%.
Bootstrap support for L0PBU9 as seed ortholog is 100%.

Group of orthologs #1144. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

Q4H3F0              	100.00%		L0P944              	100.00%
F6WD89              	47.37%		
Bootstrap support for Q4H3F0 as seed ortholog is 100%.
Bootstrap support for L0P944 as seed ortholog is 100%.

Group of orthologs #1145. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

F6T8A4              	100.00%		L0PAK5              	100.00%
Bootstrap support for F6T8A4 as seed ortholog is 100%.
Bootstrap support for L0PAK5 as seed ortholog is 100%.

Group of orthologs #1146. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

F6VIC3              	100.00%		L0P8Y9              	100.00%
Bootstrap support for F6VIC3 as seed ortholog is 100%.
Bootstrap support for L0P8Y9 as seed ortholog is 100%.

Group of orthologs #1147. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

F6VR17              	100.00%		L0PE59              	100.00%
Bootstrap support for F6VR17 as seed ortholog is 100%.
Bootstrap support for L0PE59 as seed ortholog is 100%.

Group of orthologs #1148. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

F6YCI4              	100.00%		L0PAY8              	100.00%
Bootstrap support for F6YCI4 as seed ortholog is 100%.
Bootstrap support for L0PAY8 as seed ortholog is 100%.

Group of orthologs #1149. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

F7B2X5              	100.00%		L0PDY4              	100.00%
Bootstrap support for F7B2X5 as seed ortholog is 100%.
Bootstrap support for L0PDY4 as seed ortholog is 100%.

Group of orthologs #1150. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

H2XJN8              	100.00%		L0PD91              	100.00%
Bootstrap support for H2XJN8 as seed ortholog is 100%.
Bootstrap support for L0PD91 as seed ortholog is 100%.

Group of orthologs #1151. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

F7ARN8              	100.00%		L0PGX1              	100.00%
Bootstrap support for F7ARN8 as seed ortholog is 100%.
Bootstrap support for L0PGX1 as seed ortholog is 100%.

Group of orthologs #1152. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

H2Y0C0              	100.00%		L0PF95              	100.00%
Bootstrap support for H2Y0C0 as seed ortholog is 100%.
Bootstrap support for L0PF95 as seed ortholog is 100%.

Group of orthologs #1153. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 P.jiroveci:81

H2Y013              	100.00%		L0PFT3              	100.00%
Bootstrap support for H2Y013 as seed ortholog is 100%.
Bootstrap support for L0PFT3 as seed ortholog is 100%.

Group of orthologs #1154. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:80

F6Q894              	100.00%		L0PFE2              	100.00%
Bootstrap support for F6Q894 as seed ortholog is 100%.
Bootstrap support for L0PFE2 as seed ortholog is 100%.

Group of orthologs #1155. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:80

F6WGS7              	100.00%		L0PAF5              	100.00%
Bootstrap support for F6WGS7 as seed ortholog is 100%.
Bootstrap support for L0PAF5 as seed ortholog is 100%.

Group of orthologs #1156. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:80

F6WS92              	100.00%		L0PEV0              	100.00%
Bootstrap support for F6WS92 as seed ortholog is 100%.
Bootstrap support for L0PEV0 as seed ortholog is 100%.

Group of orthologs #1157. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:80

F6Z5W5              	100.00%		L0P9T1              	100.00%
Bootstrap support for F6Z5W5 as seed ortholog is 100%.
Bootstrap support for L0P9T1 as seed ortholog is 100%.

Group of orthologs #1158. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:80

F6YHQ3              	100.00%		L0PCM3              	100.00%
Bootstrap support for F6YHQ3 as seed ortholog is 100%.
Bootstrap support for L0PCM3 as seed ortholog is 100%.

Group of orthologs #1159. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 P.jiroveci:80

H2XSS0              	100.00%		L0PD65              	100.00%
Bootstrap support for H2XSS0 as seed ortholog is 100%.
Bootstrap support for L0PD65 as seed ortholog is 100%.

Group of orthologs #1160. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

F6TV26              	100.00%		L0PBK9              	100.00%
Bootstrap support for F6TV26 as seed ortholog is 100%.
Bootstrap support for L0PBK9 as seed ortholog is 100%.

Group of orthologs #1161. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

F6WDL8              	100.00%		L0P6Z8              	100.00%
Bootstrap support for F6WDL8 as seed ortholog is 100%.
Bootstrap support for L0P6Z8 as seed ortholog is 100%.

Group of orthologs #1162. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:35 P.jiroveci:79

F6W3V6              	100.00%		L0PBX5              	100.00%
Bootstrap support for F6W3V6 as seed ortholog is 76%.
Bootstrap support for L0PBX5 as seed ortholog is 100%.

Group of orthologs #1163. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

F7B480              	100.00%		L0P872              	100.00%
Bootstrap support for F7B480 as seed ortholog is 100%.
Bootstrap support for L0P872 as seed ortholog is 100%.

Group of orthologs #1164. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

F7B496              	100.00%		L0PBP5              	100.00%
Bootstrap support for F7B496 as seed ortholog is 100%.
Bootstrap support for L0PBP5 as seed ortholog is 100%.

Group of orthologs #1165. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

H2XUY6              	100.00%		L0PEY4              	100.00%
Bootstrap support for H2XUY6 as seed ortholog is 100%.
Bootstrap support for L0PEY4 as seed ortholog is 100%.

Group of orthologs #1166. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

H2XZ76              	100.00%		L0PBR0              	100.00%
Bootstrap support for H2XZ76 as seed ortholog is 100%.
Bootstrap support for L0PBR0 as seed ortholog is 100%.

Group of orthologs #1167. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

H2Y0G6              	100.00%		L0PDS7              	100.00%
Bootstrap support for H2Y0G6 as seed ortholog is 100%.
Bootstrap support for L0PDS7 as seed ortholog is 100%.

Group of orthologs #1168. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

H2XY32              	100.00%		L0PH51              	100.00%
Bootstrap support for H2XY32 as seed ortholog is 100%.
Bootstrap support for L0PH51 as seed ortholog is 100%.

Group of orthologs #1169. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 P.jiroveci:79

H2Y1A3              	100.00%		L0PEG8              	100.00%
Bootstrap support for H2Y1A3 as seed ortholog is 100%.
Bootstrap support for L0PEG8 as seed ortholog is 100%.

Group of orthologs #1170. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.jiroveci:78

Q1RPW1              	100.00%		L0PBD3              	100.00%
                    	       		L0PCE5              	7.01%
Bootstrap support for Q1RPW1 as seed ortholog is 100%.
Bootstrap support for L0PBD3 as seed ortholog is 100%.

Group of orthologs #1171. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 P.jiroveci:78

F6YGK4              	100.00%		L0PF70              	100.00%
Bootstrap support for F6YGK4 as seed ortholog is 59%.
Alternative seed ortholog is H2XP13 (3 bits away from this cluster)
Bootstrap support for L0PF70 as seed ortholog is 100%.

Group of orthologs #1172. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.jiroveci:78

F7AWN2              	100.00%		L0PCE1              	100.00%
Bootstrap support for F7AWN2 as seed ortholog is 100%.
Bootstrap support for L0PCE1 as seed ortholog is 100%.

Group of orthologs #1173. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.jiroveci:78

H2XN24              	100.00%		L0P844              	100.00%
Bootstrap support for H2XN24 as seed ortholog is 100%.
Bootstrap support for L0P844 as seed ortholog is 100%.

Group of orthologs #1174. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 P.jiroveci:78

H2XKP6              	100.00%		L0PCX6              	100.00%
Bootstrap support for H2XKP6 as seed ortholog is 100%.
Bootstrap support for L0PCX6 as seed ortholog is 100%.

Group of orthologs #1175. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

F6PWX0              	100.00%		L0P813              	100.00%
Bootstrap support for F6PWX0 as seed ortholog is 100%.
Bootstrap support for L0P813 as seed ortholog is 100%.

Group of orthologs #1176. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

F6Q3E6              	100.00%		L0PED2              	100.00%
Bootstrap support for F6Q3E6 as seed ortholog is 100%.
Bootstrap support for L0PED2 as seed ortholog is 100%.

Group of orthologs #1177. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

F6UFW3              	100.00%		L0P9E6              	100.00%
Bootstrap support for F6UFW3 as seed ortholog is 100%.
Bootstrap support for L0P9E6 as seed ortholog is 100%.

Group of orthologs #1178. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

F6WGY1              	100.00%		L0PF64              	100.00%
Bootstrap support for F6WGY1 as seed ortholog is 100%.
Bootstrap support for L0PF64 as seed ortholog is 100%.

Group of orthologs #1179. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

F6ZGE9              	100.00%		L0P9A5              	100.00%
Bootstrap support for F6ZGE9 as seed ortholog is 100%.
Bootstrap support for L0P9A5 as seed ortholog is 100%.

Group of orthologs #1180. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

F7B4T0              	100.00%		L0PI79              	100.00%
Bootstrap support for F7B4T0 as seed ortholog is 100%.
Bootstrap support for L0PI79 as seed ortholog is 100%.

Group of orthologs #1181. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 P.jiroveci:77

H2XP71              	100.00%		L0PBG7              	100.00%
Bootstrap support for H2XP71 as seed ortholog is 100%.
Bootstrap support for L0PBG7 as seed ortholog is 100%.

Group of orthologs #1182. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:76

F6VE17              	100.00%		L0PAG3              	100.00%
Bootstrap support for F6VE17 as seed ortholog is 100%.
Bootstrap support for L0PAG3 as seed ortholog is 100%.

Group of orthologs #1183. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:76

F6Y7F7              	100.00%		L0PGS0              	100.00%
Bootstrap support for F6Y7F7 as seed ortholog is 100%.
Bootstrap support for L0PGS0 as seed ortholog is 100%.

Group of orthologs #1184. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:76

H2XJX4              	100.00%		L0P9T3              	100.00%
Bootstrap support for H2XJX4 as seed ortholog is 100%.
Bootstrap support for L0P9T3 as seed ortholog is 100%.

Group of orthologs #1185. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:76

H2XQD7              	100.00%		L0PEX4              	100.00%
Bootstrap support for H2XQD7 as seed ortholog is 100%.
Bootstrap support for L0PEX4 as seed ortholog is 100%.

Group of orthologs #1186. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:76

H2XYR7              	100.00%		L0PAT8              	100.00%
Bootstrap support for H2XYR7 as seed ortholog is 100%.
Bootstrap support for L0PAT8 as seed ortholog is 100%.

Group of orthologs #1187. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 P.jiroveci:76

Q1RLG9              	100.00%		L0P7R4              	100.00%
Bootstrap support for Q1RLG9 as seed ortholog is 100%.
Bootstrap support for L0P7R4 as seed ortholog is 100%.

Group of orthologs #1188. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:23 P.jiroveci:75

F6T010              	100.00%		L0PBK6              	100.00%
F6RID1              	44.81%		
F6Z1A5              	40.49%		
H2Y3F7              	38.18%		
F6RBM9              	33.57%		
F6T5A7              	33.29%		
F7BI82              	32.13%		
F7ARF4              	24.50%		
F6RS86              	22.48%		
H2Y2K3              	8.50%		
H2Y0Z7              	8.07%		
H2XPY7              	7.49%		
H2XVE2              	6.34%		
Bootstrap support for F6T010 as seed ortholog is 78%.
Bootstrap support for L0PBK6 as seed ortholog is 100%.

Group of orthologs #1189. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 P.jiroveci:75

F6W3Q9              	100.00%		L0PB40              	100.00%
F6UJQ6              	20.32%		
H2XY22              	18.72%		
F6U1Z9              	12.48%		
F6PLW6              	8.20%		
F6VKL9              	7.49%		
Bootstrap support for F6W3Q9 as seed ortholog is 100%.
Bootstrap support for L0PB40 as seed ortholog is 100%.

Group of orthologs #1190. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 P.jiroveci:75

F6ZFV5              	100.00%		L0P811              	100.00%
Bootstrap support for F6ZFV5 as seed ortholog is 100%.
Bootstrap support for L0P811 as seed ortholog is 100%.

Group of orthologs #1191. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 P.jiroveci:75

F6ZUP0              	100.00%		L0P6S8              	100.00%
Bootstrap support for F6ZUP0 as seed ortholog is 54%.
Alternative seed ortholog is H2XLA3 (3 bits away from this cluster)
Bootstrap support for L0P6S8 as seed ortholog is 100%.

Group of orthologs #1192. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 P.jiroveci:75

F6XWZ8              	100.00%		L0PG56              	100.00%
Bootstrap support for F6XWZ8 as seed ortholog is 100%.
Bootstrap support for L0PG56 as seed ortholog is 100%.

Group of orthologs #1193. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.jiroveci:74

F6WQS5              	100.00%		L0PHJ4              	100.00%
Bootstrap support for F6WQS5 as seed ortholog is 100%.
Bootstrap support for L0PHJ4 as seed ortholog is 100%.

Group of orthologs #1194. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.jiroveci:74

F7AG76              	100.00%		L0PHI8              	100.00%
Bootstrap support for F7AG76 as seed ortholog is 100%.
Bootstrap support for L0PHI8 as seed ortholog is 100%.

Group of orthologs #1195. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 P.jiroveci:74

H2Y0B1              	100.00%		L0PAV0              	100.00%
Bootstrap support for H2Y0B1 as seed ortholog is 100%.
Bootstrap support for L0PAV0 as seed ortholog is 100%.

Group of orthologs #1196. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.jiroveci:73

F6Q558              	100.00%		L0PGI1              	100.00%
Bootstrap support for F6Q558 as seed ortholog is 100%.
Bootstrap support for L0PGI1 as seed ortholog is 100%.

Group of orthologs #1197. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.jiroveci:73

F6WWH2              	100.00%		L0PB93              	100.00%
Bootstrap support for F6WWH2 as seed ortholog is 100%.
Bootstrap support for L0PB93 as seed ortholog is 100%.

Group of orthologs #1198. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 P.jiroveci:31

H2Y0C3              	100.00%		L0P9K1              	100.00%
Bootstrap support for H2Y0C3 as seed ortholog is 100%.
Bootstrap support for L0P9K1 as seed ortholog is 98%.

Group of orthologs #1199. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F6TK65              	100.00%		L0PC51              	100.00%
                    	       		L0PAB0              	83.51%
Bootstrap support for F6TK65 as seed ortholog is 100%.
Bootstrap support for L0PC51 as seed ortholog is 100%.

Group of orthologs #1200. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F6TJA4              	100.00%		L0P7K1              	100.00%
Bootstrap support for F6TJA4 as seed ortholog is 100%.
Bootstrap support for L0P7K1 as seed ortholog is 100%.

Group of orthologs #1201. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F6SAX1              	100.00%		L0PG35              	100.00%
Bootstrap support for F6SAX1 as seed ortholog is 100%.
Bootstrap support for L0PG35 as seed ortholog is 100%.

Group of orthologs #1202. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F6XX66              	100.00%		L0P9U7              	100.00%
Bootstrap support for F6XX66 as seed ortholog is 100%.
Bootstrap support for L0P9U7 as seed ortholog is 100%.

Group of orthologs #1203. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F6XM37              	100.00%		L0PB91              	100.00%
Bootstrap support for F6XM37 as seed ortholog is 100%.
Bootstrap support for L0PB91 as seed ortholog is 100%.

Group of orthologs #1204. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F6WQD2              	100.00%		L0PE38              	100.00%
Bootstrap support for F6WQD2 as seed ortholog is 100%.
Bootstrap support for L0PE38 as seed ortholog is 100%.

Group of orthologs #1205. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 P.jiroveci:72

F7B349              	100.00%		L0PBR6              	100.00%
Bootstrap support for F7B349 as seed ortholog is 100%.
Bootstrap support for L0PBR6 as seed ortholog is 100%.

Group of orthologs #1206. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:71

F6XCL4              	100.00%		L0PDR4              	100.00%
Bootstrap support for F6XCL4 as seed ortholog is 100%.
Bootstrap support for L0PDR4 as seed ortholog is 100%.

Group of orthologs #1207. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:71

F7BD80              	100.00%		L0PBA0              	100.00%
Bootstrap support for F7BD80 as seed ortholog is 100%.
Bootstrap support for L0PBA0 as seed ortholog is 100%.

Group of orthologs #1208. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:71

H2XUZ2              	100.00%		L0PB88              	100.00%
Bootstrap support for H2XUZ2 as seed ortholog is 100%.
Bootstrap support for L0PB88 as seed ortholog is 100%.

Group of orthologs #1209. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:71

H2XRC6              	100.00%		L0PGW3              	100.00%
Bootstrap support for H2XRC6 as seed ortholog is 100%.
Bootstrap support for L0PGW3 as seed ortholog is 100%.

Group of orthologs #1210. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 P.jiroveci:71

H2XVT6              	100.00%		L0PE66              	100.00%
Bootstrap support for H2XVT6 as seed ortholog is 100%.
Bootstrap support for L0PE66 as seed ortholog is 100%.

Group of orthologs #1211. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 P.jiroveci:70

F6T2V4              	100.00%		L0P7Q8              	100.00%
Bootstrap support for F6T2V4 as seed ortholog is 59%.
Alternative seed ortholog is F6PV13 (6 bits away from this cluster)
Bootstrap support for L0P7Q8 as seed ortholog is 100%.

Group of orthologs #1212. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.jiroveci:69

F6XPI8              	100.00%		L0PA76              	100.00%
Bootstrap support for F6XPI8 as seed ortholog is 100%.
Bootstrap support for L0PA76 as seed ortholog is 100%.

Group of orthologs #1213. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.jiroveci:69

F7BEP5              	100.00%		L0P7L1              	100.00%
Bootstrap support for F7BEP5 as seed ortholog is 100%.
Bootstrap support for L0P7L1 as seed ortholog is 100%.

Group of orthologs #1214. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.jiroveci:69

H2XWK5              	100.00%		L0P9M2              	100.00%
Bootstrap support for H2XWK5 as seed ortholog is 100%.
Bootstrap support for L0P9M2 as seed ortholog is 100%.

Group of orthologs #1215. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.jiroveci:69

H2XWJ8              	100.00%		L0PAS9              	100.00%
Bootstrap support for H2XWJ8 as seed ortholog is 100%.
Bootstrap support for L0PAS9 as seed ortholog is 100%.

Group of orthologs #1216. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 P.jiroveci:69

H2Y1I3              	100.00%		L0P8D6              	100.00%
Bootstrap support for H2Y1I3 as seed ortholog is 100%.
Bootstrap support for L0P8D6 as seed ortholog is 100%.

Group of orthologs #1217. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 P.jiroveci:68

F6SKW2              	100.00%		L0PAM7              	100.00%
Bootstrap support for F6SKW2 as seed ortholog is 100%.
Bootstrap support for L0PAM7 as seed ortholog is 100%.

Group of orthologs #1218. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

H2XUX5              	100.00%		L0P954              	100.00%
H2XX60              	18.33%		
F6TUQ2              	14.66%		
Bootstrap support for H2XUX5 as seed ortholog is 100%.
Bootstrap support for L0P954 as seed ortholog is 100%.

Group of orthologs #1219. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

F6PH01              	100.00%		L0PCD9              	100.00%
Bootstrap support for F6PH01 as seed ortholog is 100%.
Bootstrap support for L0PCD9 as seed ortholog is 100%.

Group of orthologs #1220. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

F6U3C1              	100.00%		L0PAW3              	100.00%
Bootstrap support for F6U3C1 as seed ortholog is 100%.
Bootstrap support for L0PAW3 as seed ortholog is 100%.

Group of orthologs #1221. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

F6W2W3              	100.00%		L0P7Y3              	100.00%
Bootstrap support for F6W2W3 as seed ortholog is 100%.
Bootstrap support for L0P7Y3 as seed ortholog is 100%.

Group of orthologs #1222. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

H2XJI9              	100.00%		L0P7Z6              	100.00%
Bootstrap support for H2XJI9 as seed ortholog is 100%.
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #1223. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

H2XLH8              	100.00%		L0PDI5              	100.00%
Bootstrap support for H2XLH8 as seed ortholog is 100%.
Bootstrap support for L0PDI5 as seed ortholog is 100%.

Group of orthologs #1224. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:67

H2XX99              	100.00%		L0PB75              	100.00%
Bootstrap support for H2XX99 as seed ortholog is 100%.
Bootstrap support for L0PB75 as seed ortholog is 100%.

Group of orthologs #1225. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 P.jiroveci:14

Q1RL82              	100.00%		L0PIV0              	100.00%
Bootstrap support for Q1RL82 as seed ortholog is 100%.
Bootstrap support for L0PIV0 as seed ortholog is 74%.
Alternative seed ortholog is L0P806 (14 bits away from this cluster)

Group of orthologs #1226. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

F6XVG4              	100.00%		L0P8T2              	100.00%
                    	       		L0PA19              	100.00%
Bootstrap support for F6XVG4 as seed ortholog is 100%.
Bootstrap support for L0P8T2 as seed ortholog is 100%.
Bootstrap support for L0PA19 as seed ortholog is 100%.

Group of orthologs #1227. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

F6SKS5              	100.00%		L0PBY4              	100.00%
Bootstrap support for F6SKS5 as seed ortholog is 100%.
Bootstrap support for L0PBY4 as seed ortholog is 100%.

Group of orthologs #1228. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

F6SXS9              	100.00%		L0PG11              	100.00%
Bootstrap support for F6SXS9 as seed ortholog is 100%.
Bootstrap support for L0PG11 as seed ortholog is 100%.

Group of orthologs #1229. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

F6VKW3              	100.00%		L0PBP1              	100.00%
Bootstrap support for F6VKW3 as seed ortholog is 100%.
Bootstrap support for L0PBP1 as seed ortholog is 100%.

Group of orthologs #1230. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

F7AWW1              	100.00%		L0PAP8              	100.00%
Bootstrap support for F7AWW1 as seed ortholog is 100%.
Bootstrap support for L0PAP8 as seed ortholog is 100%.

Group of orthologs #1231. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

F7AER5              	100.00%		L0PHV6              	100.00%
Bootstrap support for F7AER5 as seed ortholog is 100%.
Bootstrap support for L0PHV6 as seed ortholog is 100%.

Group of orthologs #1232. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 P.jiroveci:66

H2Y2U9              	100.00%		L0PFK4              	100.00%
Bootstrap support for H2Y2U9 as seed ortholog is 100%.
Bootstrap support for L0PFK4 as seed ortholog is 100%.

Group of orthologs #1233. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:65

F6QIW3              	100.00%		L0PHR2              	100.00%
Bootstrap support for F6QIW3 as seed ortholog is 100%.
Bootstrap support for L0PHR2 as seed ortholog is 100%.

Group of orthologs #1234. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:65

F6VUS5              	100.00%		L0P745              	100.00%
Bootstrap support for F6VUS5 as seed ortholog is 100%.
Bootstrap support for L0P745 as seed ortholog is 100%.

Group of orthologs #1235. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:22

H2XL05              	100.00%		L0PGG4              	100.00%
Bootstrap support for H2XL05 as seed ortholog is 100%.
Bootstrap support for L0PGG4 as seed ortholog is 94%.

Group of orthologs #1236. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 P.jiroveci:65

H2XRD0              	100.00%		L0PE35              	100.00%
Bootstrap support for H2XRD0 as seed ortholog is 100%.
Bootstrap support for L0PE35 as seed ortholog is 100%.

Group of orthologs #1237. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.jiroveci:64

F6X1X1              	100.00%		L0P8V0              	100.00%
F6QAL4              	49.07%		
F6QAM3              	48.64%		
F6SL89              	23.39%		
F6X593              	22.81%		
H2XX96              	21.95%		
Bootstrap support for F6X1X1 as seed ortholog is 100%.
Bootstrap support for L0P8V0 as seed ortholog is 100%.

Group of orthologs #1238. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.jiroveci:64

F7A9T3              	100.00%		L0PDC5              	100.00%
Bootstrap support for F7A9T3 as seed ortholog is 100%.
Bootstrap support for L0PDC5 as seed ortholog is 100%.

Group of orthologs #1239. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:18 P.jiroveci:64

H2XTT8              	100.00%		L0P881              	100.00%
Bootstrap support for H2XTT8 as seed ortholog is 86%.
Bootstrap support for L0P881 as seed ortholog is 100%.

Group of orthologs #1240. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 P.jiroveci:64

Q8T885              	100.00%		L0PA11              	100.00%
Bootstrap support for Q8T885 as seed ortholog is 100%.
Bootstrap support for L0PA11 as seed ortholog is 100%.

Group of orthologs #1241. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 P.jiroveci:63

F6S2Y7              	100.00%		L0PI42              	100.00%
Bootstrap support for F6S2Y7 as seed ortholog is 100%.
Bootstrap support for L0PI42 as seed ortholog is 100%.

Group of orthologs #1242. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 P.jiroveci:63

F6YBL5              	100.00%		L0PCA9              	100.00%
Bootstrap support for F6YBL5 as seed ortholog is 100%.
Bootstrap support for L0PCA9 as seed ortholog is 100%.

Group of orthologs #1243. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 P.jiroveci:63

H2XYK0              	100.00%		L0PE69              	100.00%
Bootstrap support for H2XYK0 as seed ortholog is 100%.
Bootstrap support for L0PE69 as seed ortholog is 100%.

Group of orthologs #1244. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:19

F6Y7T8              	100.00%		L0PAD3              	100.00%
H2XY34              	100.00%		
F6X9C7              	42.61%		
H2XPK9              	36.01%		
F6VCD8              	12.57%		
F6SGH3              	7.27%		
Bootstrap support for F6Y7T8 as seed ortholog is 100%.
Bootstrap support for H2XY34 as seed ortholog is 100%.
Bootstrap support for L0PAD3 as seed ortholog is 78%.

Group of orthologs #1245. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:62

F6UKG9              	100.00%		L0P819              	100.00%
Bootstrap support for F6UKG9 as seed ortholog is 100%.
Bootstrap support for L0P819 as seed ortholog is 100%.

Group of orthologs #1246. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:62

F6T047              	100.00%		L0PFF1              	100.00%
Bootstrap support for F6T047 as seed ortholog is 100%.
Bootstrap support for L0PFF1 as seed ortholog is 100%.

Group of orthologs #1247. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 P.jiroveci:62

Q4H3E0              	100.00%		L0PBB5              	100.00%
Bootstrap support for Q4H3E0 as seed ortholog is 100%.
Bootstrap support for L0PBB5 as seed ortholog is 100%.

Group of orthologs #1248. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.jiroveci:61

F6Q7X0              	100.00%		L0PEH0              	100.00%
Bootstrap support for F6Q7X0 as seed ortholog is 100%.
Bootstrap support for L0PEH0 as seed ortholog is 100%.

Group of orthologs #1249. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.jiroveci:61

F6WUB5              	100.00%		L0PAA2              	100.00%
Bootstrap support for F6WUB5 as seed ortholog is 100%.
Bootstrap support for L0PAA2 as seed ortholog is 100%.

Group of orthologs #1250. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.jiroveci:61

F6Z0W4              	100.00%		L0PGA3              	100.00%
Bootstrap support for F6Z0W4 as seed ortholog is 100%.
Bootstrap support for L0PGA3 as seed ortholog is 100%.

Group of orthologs #1251. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 P.jiroveci:61

H2XWM6              	100.00%		L0PH76              	100.00%
Bootstrap support for H2XWM6 as seed ortholog is 100%.
Bootstrap support for L0PH76 as seed ortholog is 100%.

Group of orthologs #1252. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:18 P.jiroveci:61

H2Y1S7              	100.00%		L0PGH7              	100.00%
Bootstrap support for H2Y1S7 as seed ortholog is 78%.
Bootstrap support for L0PGH7 as seed ortholog is 100%.

Group of orthologs #1253. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.jiroveci:60

F6X986              	100.00%		L0PFT1              	100.00%
F6YB82              	28.40%		
H2Y1W9              	24.80%		
H2XY30              	10.80%		
F7AM07              	7.60%		
Bootstrap support for F6X986 as seed ortholog is 100%.
Bootstrap support for L0PFT1 as seed ortholog is 100%.

Group of orthologs #1254. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.jiroveci:60

F6VXB1              	100.00%		L0PAF6              	100.00%
Bootstrap support for F6VXB1 as seed ortholog is 100%.
Bootstrap support for L0PAF6 as seed ortholog is 100%.

Group of orthologs #1255. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 P.jiroveci:60

F6Z6N2              	100.00%		L0PBC9              	100.00%
Bootstrap support for F6Z6N2 as seed ortholog is 100%.
Bootstrap support for L0PBC9 as seed ortholog is 100%.

Group of orthologs #1256. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 P.jiroveci:59

F6ZED0              	100.00%		L0P9X6              	100.00%
Bootstrap support for F6ZED0 as seed ortholog is 100%.
Bootstrap support for L0P9X6 as seed ortholog is 100%.

Group of orthologs #1257. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 P.jiroveci:59

F6XYG2              	100.00%		L0PHU9              	100.00%
Bootstrap support for F6XYG2 as seed ortholog is 100%.
Bootstrap support for L0PHU9 as seed ortholog is 100%.

Group of orthologs #1258. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 P.jiroveci:59

H2XKM5              	100.00%		L0PE14              	100.00%
Bootstrap support for H2XKM5 as seed ortholog is 100%.
Bootstrap support for L0PE14 as seed ortholog is 100%.

Group of orthologs #1259. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 P.jiroveci:59

Q4H3N8              	100.00%		L0PAG5              	100.00%
Bootstrap support for Q4H3N8 as seed ortholog is 100%.
Bootstrap support for L0PAG5 as seed ortholog is 100%.

Group of orthologs #1260. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.jiroveci:58

F6YF53              	100.00%		L0PBU7              	100.00%
H2XX28              	11.11%		
H2Y1H5              	7.89%		
F7B2N2              	6.81%		
Bootstrap support for F6YF53 as seed ortholog is 100%.
Bootstrap support for L0PBU7 as seed ortholog is 100%.

Group of orthologs #1261. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.jiroveci:58

F6W8Z2              	100.00%		L0PFP3              	100.00%
Bootstrap support for F6W8Z2 as seed ortholog is 100%.
Bootstrap support for L0PFP3 as seed ortholog is 100%.

Group of orthologs #1262. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 P.jiroveci:58

H2XV81              	100.00%		L0PGK1              	100.00%
Bootstrap support for H2XV81 as seed ortholog is 100%.
Bootstrap support for L0PGK1 as seed ortholog is 100%.

Group of orthologs #1263. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

F6V2S0              	100.00%		L0PGX3              	100.00%
H2XQR2              	41.34%		
F6SZN1              	32.22%		
F6Y516              	26.14%		
F7A7T2              	21.58%		
F6XVZ5              	15.81%		
Bootstrap support for F6V2S0 as seed ortholog is 100%.
Bootstrap support for L0PGX3 as seed ortholog is 100%.

Group of orthologs #1264. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

F7AAN8              	100.00%		L0PDS6              	100.00%
H2XYH1              	70.20%		
F6SKK8              	15.96%		
F7A515              	5.54%		
Bootstrap support for F7AAN8 as seed ortholog is 100%.
Bootstrap support for L0PDS6 as seed ortholog is 100%.

Group of orthologs #1265. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

F6R035              	100.00%		L0P988              	100.00%
Bootstrap support for F6R035 as seed ortholog is 100%.
Bootstrap support for L0P988 as seed ortholog is 100%.

Group of orthologs #1266. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

F6W4G9              	100.00%		L0PFU3              	100.00%
Bootstrap support for F6W4G9 as seed ortholog is 100%.
Bootstrap support for L0PFU3 as seed ortholog is 100%.

Group of orthologs #1267. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

F7ALL0              	100.00%		L0P724              	100.00%
Bootstrap support for F7ALL0 as seed ortholog is 100%.
Bootstrap support for L0P724 as seed ortholog is 100%.

Group of orthologs #1268. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

H2XS18              	100.00%		L0PCB5              	100.00%
Bootstrap support for H2XS18 as seed ortholog is 100%.
Bootstrap support for L0PCB5 as seed ortholog is 100%.

Group of orthologs #1269. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

H2XXY8              	100.00%		L0PDB5              	100.00%
Bootstrap support for H2XXY8 as seed ortholog is 100%.
Bootstrap support for L0PDB5 as seed ortholog is 100%.

Group of orthologs #1270. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 P.jiroveci:57

H2XXY6              	100.00%		L0PHZ2              	100.00%
Bootstrap support for H2XXY6 as seed ortholog is 100%.
Bootstrap support for L0PHZ2 as seed ortholog is 100%.

Group of orthologs #1271. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 P.jiroveci:56

F6V9P3              	100.00%		L0PAD5              	100.00%
Bootstrap support for F6V9P3 as seed ortholog is 100%.
Bootstrap support for L0PAD5 as seed ortholog is 100%.

Group of orthologs #1272. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 P.jiroveci:56

F6TPM4              	100.00%		L0PEM7              	100.00%
Bootstrap support for F6TPM4 as seed ortholog is 100%.
Bootstrap support for L0PEM7 as seed ortholog is 100%.

Group of orthologs #1273. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 P.jiroveci:56

F7ANT6              	100.00%		L0PF50              	100.00%
Bootstrap support for F7ANT6 as seed ortholog is 100%.
Bootstrap support for L0PF50 as seed ortholog is 100%.

Group of orthologs #1274. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 P.jiroveci:56

H2XZW2              	100.00%		L0PBS8              	100.00%
Bootstrap support for H2XZW2 as seed ortholog is 100%.
Bootstrap support for L0PBS8 as seed ortholog is 100%.

Group of orthologs #1275. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:55

F6T4U7              	100.00%		L0PBX0              	100.00%
F6ZUV3              	35.56%		
Bootstrap support for F6T4U7 as seed ortholog is 100%.
Bootstrap support for L0PBX0 as seed ortholog is 100%.

Group of orthologs #1276. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:55

F6PZG6              	100.00%		L0PDR2              	100.00%
Bootstrap support for F6PZG6 as seed ortholog is 100%.
Bootstrap support for L0PDR2 as seed ortholog is 100%.

Group of orthologs #1277. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:11 P.jiroveci:55

F6WMA6              	100.00%		L0P8Q3              	100.00%
Bootstrap support for F6WMA6 as seed ortholog is 67%.
Alternative seed ortholog is H2XWZ9 (11 bits away from this cluster)
Bootstrap support for L0P8Q3 as seed ortholog is 100%.

Group of orthologs #1278. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:55

F6WR94              	100.00%		L0PC69              	100.00%
Bootstrap support for F6WR94 as seed ortholog is 100%.
Bootstrap support for L0PC69 as seed ortholog is 100%.

Group of orthologs #1279. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 P.jiroveci:55

F6YWD0              	100.00%		L0PGC3              	100.00%
Bootstrap support for F6YWD0 as seed ortholog is 100%.
Bootstrap support for L0PGC3 as seed ortholog is 100%.

Group of orthologs #1280. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:54

F6R725              	100.00%		L0PAW5              	100.00%
Bootstrap support for F6R725 as seed ortholog is 100%.
Bootstrap support for L0PAW5 as seed ortholog is 100%.

Group of orthologs #1281. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:54

F6S5E1              	100.00%		L0PAS0              	100.00%
Bootstrap support for F6S5E1 as seed ortholog is 100%.
Bootstrap support for L0PAS0 as seed ortholog is 100%.

Group of orthologs #1282. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:54

F7BGS1              	100.00%		L0PEQ9              	100.00%
Bootstrap support for F7BGS1 as seed ortholog is 100%.
Bootstrap support for L0PEQ9 as seed ortholog is 100%.

Group of orthologs #1283. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 P.jiroveci:54

H2XSA5              	100.00%		L0PFA1              	100.00%
Bootstrap support for H2XSA5 as seed ortholog is 100%.
Bootstrap support for L0PFA1 as seed ortholog is 100%.

Group of orthologs #1284. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 P.jiroveci:53

F7AXL0              	100.00%		L0P7Y0              	100.00%
F6PQW3              	13.02%		
Bootstrap support for F7AXL0 as seed ortholog is 100%.
Bootstrap support for L0P7Y0 as seed ortholog is 100%.

Group of orthologs #1285. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

H2XMA9              	100.00%		L0PAV7              	100.00%
                    	       		L0PBJ9              	100.00%
Bootstrap support for H2XMA9 as seed ortholog is 100%.
Bootstrap support for L0PAV7 as seed ortholog is 100%.
Bootstrap support for L0PBJ9 as seed ortholog is 100%.

Group of orthologs #1286. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

F6PX81              	100.00%		L0PCS5              	100.00%
Bootstrap support for F6PX81 as seed ortholog is 100%.
Bootstrap support for L0PCS5 as seed ortholog is 100%.

Group of orthologs #1287. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

F6Q8V1              	100.00%		L0PFS6              	100.00%
Bootstrap support for F6Q8V1 as seed ortholog is 100%.
Bootstrap support for L0PFS6 as seed ortholog is 100%.

Group of orthologs #1288. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:7

F6T9N5              	100.00%		L0PFW6              	100.00%
Bootstrap support for F6T9N5 as seed ortholog is 100%.
Bootstrap support for L0PFW6 as seed ortholog is 60%.
Alternative seed ortholog is L0PEH1 (7 bits away from this cluster)

Group of orthologs #1289. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

F6WQJ1              	100.00%		L0PEV3              	100.00%
Bootstrap support for F6WQJ1 as seed ortholog is 100%.
Bootstrap support for L0PEV3 as seed ortholog is 100%.

Group of orthologs #1290. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

F6WIJ0              	100.00%		L0PFE5              	100.00%
Bootstrap support for F6WIJ0 as seed ortholog is 100%.
Bootstrap support for L0PFE5 as seed ortholog is 100%.

Group of orthologs #1291. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

F6WBQ8              	100.00%		L0PHE7              	100.00%
Bootstrap support for F6WBQ8 as seed ortholog is 100%.
Bootstrap support for L0PHE7 as seed ortholog is 100%.

Group of orthologs #1292. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

H2XN89              	100.00%		L0P9R4              	100.00%
Bootstrap support for H2XN89 as seed ortholog is 100%.
Bootstrap support for L0P9R4 as seed ortholog is 100%.

Group of orthologs #1293. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 P.jiroveci:52

H2Y058              	100.00%		L0P7Q6              	100.00%
Bootstrap support for H2Y058 as seed ortholog is 100%.
Bootstrap support for L0P7Q6 as seed ortholog is 100%.

Group of orthologs #1294. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:51

F6S7U3              	100.00%		L0PDV4              	100.00%
                    	       		L0PFY5              	73.30%
Bootstrap support for F6S7U3 as seed ortholog is 100%.
Bootstrap support for L0PDV4 as seed ortholog is 100%.

Group of orthologs #1295. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:51

F6YF45              	100.00%		L0PE32              	100.00%
Bootstrap support for F6YF45 as seed ortholog is 100%.
Bootstrap support for L0PE32 as seed ortholog is 100%.

Group of orthologs #1296. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 P.jiroveci:51

H2Y240              	100.00%		L0PFV5              	100.00%
Bootstrap support for H2Y240 as seed ortholog is 100%.
Bootstrap support for L0PFV5 as seed ortholog is 100%.

Group of orthologs #1297. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.jiroveci:50

F6XG24              	100.00%		L0PC41              	100.00%
Bootstrap support for F6XG24 as seed ortholog is 100%.
Bootstrap support for L0PC41 as seed ortholog is 100%.

Group of orthologs #1298. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.jiroveci:50

F6Z833              	100.00%		L0PA96              	100.00%
Bootstrap support for F6Z833 as seed ortholog is 100%.
Bootstrap support for L0PA96 as seed ortholog is 100%.

Group of orthologs #1299. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 P.jiroveci:50

H2XM31              	100.00%		L0P9B7              	100.00%
Bootstrap support for H2XM31 as seed ortholog is 100%.
Bootstrap support for L0P9B7 as seed ortholog is 100%.

Group of orthologs #1300. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.jiroveci:49

F6ZG00              	100.00%		L0PD48              	100.00%
                    	       		L0PGS1              	10.72%
Bootstrap support for F6ZG00 as seed ortholog is 100%.
Bootstrap support for L0PD48 as seed ortholog is 100%.

Group of orthologs #1301. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 P.jiroveci:49

F6WCM2              	100.00%		L0PGZ4              	100.00%
Bootstrap support for F6WCM2 as seed ortholog is 100%.
Bootstrap support for L0PGZ4 as seed ortholog is 100%.

Group of orthologs #1302. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 P.jiroveci:48

F6UG66              	100.00%		L0PAE2              	100.00%
Bootstrap support for F6UG66 as seed ortholog is 100%.
Bootstrap support for L0PAE2 as seed ortholog is 100%.

Group of orthologs #1303. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.jiroveci:47

F6RM26              	100.00%		L0PBM1              	100.00%
Bootstrap support for F6RM26 as seed ortholog is 100%.
Bootstrap support for L0PBM1 as seed ortholog is 100%.

Group of orthologs #1304. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.jiroveci:47

F6WEG7              	100.00%		L0P924              	100.00%
Bootstrap support for F6WEG7 as seed ortholog is 100%.
Bootstrap support for L0P924 as seed ortholog is 100%.

Group of orthologs #1305. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 P.jiroveci:47

F7AE51              	100.00%		L0PFU6              	100.00%
Bootstrap support for F7AE51 as seed ortholog is 100%.
Bootstrap support for L0PFU6 as seed ortholog is 100%.

Group of orthologs #1306. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 P.jiroveci:46

F6YX22              	100.00%		L0PD16              	100.00%
Bootstrap support for F6YX22 as seed ortholog is 100%.
Bootstrap support for L0PD16 as seed ortholog is 100%.

Group of orthologs #1307. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.jiroveci:45

F7AP79              	100.00%		L0P9W0              	100.00%
F6ULU6              	57.46%		
H2XZ40              	49.63%		
Bootstrap support for F7AP79 as seed ortholog is 100%.
Bootstrap support for L0P9W0 as seed ortholog is 100%.

Group of orthologs #1308. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 P.jiroveci:45

H2Y052              	100.00%		L0PB26              	100.00%
Bootstrap support for H2Y052 as seed ortholog is 100%.
Bootstrap support for L0PB26 as seed ortholog is 100%.

Group of orthologs #1309. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.jiroveci:43

H2XQR9              	100.00%		L0PA84              	100.00%
                    	       		L0PGH1              	73.62%
Bootstrap support for H2XQR9 as seed ortholog is 100%.
Bootstrap support for L0PA84 as seed ortholog is 100%.

Group of orthologs #1310. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 P.jiroveci:43

F6XKF8              	100.00%		L0PF55              	100.00%
Bootstrap support for F6XKF8 as seed ortholog is 100%.
Bootstrap support for L0PF55 as seed ortholog is 100%.

Group of orthologs #1311. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.jiroveci:42

H2XQD2              	100.00%		L0PG69              	100.00%
H2XZI8              	35.87%		L0PBQ3              	5.61%
H2XVI2              	33.18%		
F7AVL3              	23.99%		
H2XNU9              	14.13%		
H2XQ86              	8.30%		
Bootstrap support for H2XQD2 as seed ortholog is 100%.
Bootstrap support for L0PG69 as seed ortholog is 100%.

Group of orthologs #1312. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 P.jiroveci:42

F6ZYD2              	100.00%		L0P8V4              	100.00%
Bootstrap support for F6ZYD2 as seed ortholog is 100%.
Bootstrap support for L0P8V4 as seed ortholog is 100%.

Group of orthologs #1313. Best score 40 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 P.jiroveci:40

H2XN37              	100.00%		L0PFN5              	100.00%
Bootstrap support for H2XN37 as seed ortholog is 100%.
Bootstrap support for L0PFN5 as seed ortholog is 100%.