###################################
177 groups of orthologs
298 in-paralogs from C.intestinalis
189 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 882 bits
Score difference with first non-orthologous sequence - C.intestinalis:617 C.trachomatis:882

F7AKQ3              	100.00%		O84022              	100.00%
Bootstrap support for F7AKQ3 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 833 bits
Score difference with first non-orthologous sequence - C.intestinalis:833 C.trachomatis:833

F6PV45              	100.00%		O84250              	100.00%
Bootstrap support for F6PV45 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 714 bits
Score difference with first non-orthologous sequence - C.intestinalis:714 C.trachomatis:714

F6Z5E6              	100.00%		O84348              	100.00%
Bootstrap support for F6Z5E6 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #4. Best score 687 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.trachomatis:687

H2XU53              	100.00%		P17821              	100.00%
Bootstrap support for H2XU53 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #5. Best score 610 bits
Score difference with first non-orthologous sequence - C.intestinalis:610 C.trachomatis:610

F6ZZF2              	100.00%		O84716              	100.00%
Bootstrap support for F6ZZF2 as seed ortholog is 100%.
Bootstrap support for O84716 as seed ortholog is 100%.

Group of orthologs #6. Best score 534 bits
Score difference with first non-orthologous sequence - C.intestinalis:443 C.trachomatis:358

F6WTE3              	100.00%		P0C0Z7              	100.00%
Bootstrap support for F6WTE3 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #7. Best score 498 bits
Score difference with first non-orthologous sequence - C.intestinalis:361 C.trachomatis:498

F6QIK7              	100.00%		O84067              	100.00%
Bootstrap support for F6QIK7 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #8. Best score 493 bits
Score difference with first non-orthologous sequence - C.intestinalis:493 C.trachomatis:493

F6SI05              	100.00%		O84585              	100.00%
Bootstrap support for F6SI05 as seed ortholog is 100%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #9. Best score 478 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.trachomatis:478

F6UKC4              	100.00%		O84444              	100.00%
Bootstrap support for F6UKC4 as seed ortholog is 86%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #10. Best score 474 bits
Score difference with first non-orthologous sequence - C.intestinalis:429 C.trachomatis:474

F6Z761              	100.00%		O84863              	100.00%
Bootstrap support for F6Z761 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #11. Best score 461 bits
Score difference with first non-orthologous sequence - C.intestinalis:461 C.trachomatis:461

H2Y1Z9              	100.00%		O84754              	100.00%
Bootstrap support for H2Y1Z9 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #12. Best score 458 bits
Score difference with first non-orthologous sequence - C.intestinalis:458 C.trachomatis:458

H2XKW2              	100.00%		P0CD73              	100.00%
Bootstrap support for H2XKW2 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #13. Best score 451 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 C.trachomatis:451

F6PJX3              	100.00%		O84304              	100.00%
Bootstrap support for F6PJX3 as seed ortholog is 96%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #14. Best score 430 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.trachomatis:430

F6Y8H4              	100.00%		O84848              	100.00%
Bootstrap support for F6Y8H4 as seed ortholog is 98%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #15. Best score 412 bits
Score difference with first non-orthologous sequence - C.intestinalis:412 C.trachomatis:412

F6Z6L6              	100.00%		O84126              	100.00%
Bootstrap support for F6Z6L6 as seed ortholog is 100%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #16. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:411 C.trachomatis:411

F6Z3S0              	100.00%		O84460              	100.00%
Bootstrap support for F6Z3S0 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #17. Best score 403 bits
Score difference with first non-orthologous sequence - C.intestinalis:403 C.trachomatis:403

F6V5U6              	100.00%		Q59321              	100.00%
Bootstrap support for F6V5U6 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #18. Best score 398 bits
Score difference with first non-orthologous sequence - C.intestinalis:398 C.trachomatis:398

F6TKV3              	100.00%		O84057              	100.00%
Bootstrap support for F6TKV3 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #19. Best score 379 bits
Score difference with first non-orthologous sequence - C.intestinalis:250 C.trachomatis:379

H2XL44              	100.00%		O84546              	100.00%
Bootstrap support for H2XL44 as seed ortholog is 100%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #20. Best score 377 bits
Score difference with first non-orthologous sequence - C.intestinalis:377 C.trachomatis:377

H2XJT5              	100.00%		O84310              	100.00%
Bootstrap support for H2XJT5 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #21. Best score 374 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 C.trachomatis:374

F6XK10              	100.00%		O84211              	100.00%
Bootstrap support for F6XK10 as seed ortholog is 99%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #22. Best score 374 bits
Score difference with first non-orthologous sequence - C.intestinalis:272 C.trachomatis:374

F6XZ93              	100.00%		O84591              	100.00%
Bootstrap support for F6XZ93 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #23. Best score 362 bits
Score difference with first non-orthologous sequence - C.intestinalis:362 C.trachomatis:362

H2XXZ7              	100.00%		P0CE13              	100.00%
Bootstrap support for H2XXZ7 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #24. Best score 360 bits
Score difference with first non-orthologous sequence - C.intestinalis:194 C.trachomatis:360

F6TX56              	100.00%		P0CD71              	100.00%
Bootstrap support for F6TX56 as seed ortholog is 100%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #25. Best score 345 bits
Score difference with first non-orthologous sequence - C.intestinalis:345 C.trachomatis:345

F6ZHM4              	100.00%		O84098              	100.00%
Bootstrap support for F6ZHM4 as seed ortholog is 100%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #26. Best score 337 bits
Score difference with first non-orthologous sequence - C.intestinalis:337 C.trachomatis:337

F6UTV1              	100.00%		O84829              	100.00%
Bootstrap support for F6UTV1 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #27. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 C.trachomatis:326

H2XQX5              	100.00%		O84035              	100.00%
Bootstrap support for H2XQX5 as seed ortholog is 100%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #28. Best score 322 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.trachomatis:322

F6Z3I0              	100.00%		O84831              	100.00%
Bootstrap support for F6Z3I0 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #29. Best score 315 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.trachomatis:315

F6WR85              	100.00%		O84561              	100.00%
Bootstrap support for F6WR85 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #30. Best score 315 bits
Score difference with first non-orthologous sequence - C.intestinalis:243 C.trachomatis:315

F6XJ08              	100.00%		O84786              	100.00%
Bootstrap support for F6XJ08 as seed ortholog is 100%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #31. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.trachomatis:305

F7BBJ9              	100.00%		O84248              	100.00%
Bootstrap support for F7BBJ9 as seed ortholog is 99%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #32. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.trachomatis:304

F6QR00              	100.00%		P0CE09              	100.00%
Bootstrap support for F6QR00 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #33. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.trachomatis:304

F6YND1              	100.00%		P0CD78              	100.00%
Bootstrap support for F6YND1 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #34. Best score 298 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 C.trachomatis:298

F6XMM6              	100.00%		O84315              	100.00%
Bootstrap support for F6XMM6 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #35. Best score 292 bits
Score difference with first non-orthologous sequence - C.intestinalis:292 C.trachomatis:292

F6ZFS8              	100.00%		O84698              	100.00%
F6UR25              	19.13%		
Bootstrap support for F6ZFS8 as seed ortholog is 100%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #36. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 C.trachomatis:290

F6SSW4              	100.00%		O84775              	100.00%
Bootstrap support for F6SSW4 as seed ortholog is 100%.
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #37. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:287 C.trachomatis:287

F6UI47              	100.00%		P0CE21              	100.00%
Bootstrap support for F6UI47 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #38. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:287 C.trachomatis:287

F6VC80              	100.00%		O84823              	100.00%
Bootstrap support for F6VC80 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #39. Best score 275 bits
Score difference with first non-orthologous sequence - C.intestinalis:275 C.trachomatis:275

F6SUC2              	100.00%		O84316              	100.00%
Bootstrap support for F6SUC2 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #40. Best score 266 bits
Score difference with first non-orthologous sequence - C.intestinalis:152 C.trachomatis:266

H2Y3K9              	100.00%		O84381              	100.00%
Bootstrap support for H2Y3K9 as seed ortholog is 99%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #41. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.trachomatis:265

F7AX62              	100.00%		O84188              	100.00%
Bootstrap support for F7AX62 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #42. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 C.trachomatis:264

F7A4H8              	100.00%		O84828              	100.00%
F6YK29              	16.75%		
Bootstrap support for F7A4H8 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #43. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.trachomatis:262

F7B2R9              	100.00%		O84451              	100.00%
Bootstrap support for F7B2R9 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #44. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.trachomatis:85

F7AZV0              	100.00%		O84058              	100.00%
Bootstrap support for F7AZV0 as seed ortholog is 99%.
Bootstrap support for O84058 as seed ortholog is 98%.

Group of orthologs #45. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 C.trachomatis:120

F7BH52              	100.00%		O84249              	100.00%
F6YIX5              	5.09%		
Bootstrap support for F7BH52 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 99%.

Group of orthologs #46. Best score 257 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 C.trachomatis:257

F6U5W6              	100.00%		O84711              	100.00%
Bootstrap support for F6U5W6 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #47. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 C.trachomatis:253

H2XJF4              	100.00%		O84439              	100.00%
Bootstrap support for H2XJF4 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #48. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:252 C.trachomatis:252

H2XX92              	100.00%		O84289              	100.00%
Bootstrap support for H2XX92 as seed ortholog is 100%.
Bootstrap support for O84289 as seed ortholog is 100%.

Group of orthologs #49. Best score 249 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.trachomatis:249

F7A8C2              	100.00%		O84309              	100.00%
Bootstrap support for F7A8C2 as seed ortholog is 99%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #50. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 C.trachomatis:243

F6SI15              	100.00%		O84797              	100.00%
Bootstrap support for F6SI15 as seed ortholog is 71%.
Alternative seed ortholog is F6UCG0 (3 bits away from this cluster)
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #51. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.trachomatis:242

F6ZWW6              	100.00%		O84297              	100.00%
Bootstrap support for F6ZWW6 as seed ortholog is 99%.
Bootstrap support for O84297 as seed ortholog is 100%.

Group of orthologs #52. Best score 241 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.trachomatis:241

F6TGH1              	100.00%		O84352              	100.00%
F7AVY6              	16.79%		
F7AXJ1              	14.20%		
Bootstrap support for F6TGH1 as seed ortholog is 99%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #53. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 C.trachomatis:238

F6SLC8              	100.00%		O84094              	100.00%
Bootstrap support for F6SLC8 as seed ortholog is 100%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #54. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 C.trachomatis:105

F6X7T3              	100.00%		O84406              	100.00%
F6Y178              	44.91%		
F6U1B1              	24.57%		
Bootstrap support for F6X7T3 as seed ortholog is 100%.
Bootstrap support for O84406 as seed ortholog is 99%.

Group of orthologs #55. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 C.trachomatis:235

F6XIQ9              	100.00%		O84642              	100.00%
F7AJP1              	17.55%		
Bootstrap support for F6XIQ9 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #56. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 C.trachomatis:229

F7AVN1              	100.00%		O84562              	100.00%
Bootstrap support for F7AVN1 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #57. Best score 226 bits
Score difference with first non-orthologous sequence - C.intestinalis:226 C.trachomatis:226

F6V6S8              	100.00%		O84296              	100.00%
Bootstrap support for F6V6S8 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #58. Best score 225 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.trachomatis:225

H2XUL1              	100.00%		O84423              	100.00%
Bootstrap support for H2XUL1 as seed ortholog is 95%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #59. Best score 223 bits
Score difference with first non-orthologous sequence - C.intestinalis:223 C.trachomatis:223

F7AH61              	100.00%		O84613              	100.00%
Bootstrap support for F7AH61 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #60. Best score 218 bits
Score difference with first non-orthologous sequence - C.intestinalis:218 C.trachomatis:218

F6YLQ9              	100.00%		P36431              	100.00%
Bootstrap support for F6YLQ9 as seed ortholog is 100%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #61. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:216 C.trachomatis:83

F6VBU5              	100.00%		O84028              	100.00%
Bootstrap support for F6VBU5 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 98%.

Group of orthologs #62. Best score 215 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.trachomatis:215

F6SSX2              	100.00%		O84049              	100.00%
Bootstrap support for F6SSX2 as seed ortholog is 99%.
Bootstrap support for O84049 as seed ortholog is 100%.

Group of orthologs #63. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.trachomatis:207

H2Y3D5              	100.00%		O84787              	100.00%
Bootstrap support for H2Y3D5 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #64. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 C.trachomatis:205

H2XQT6              	100.00%		O84266              	100.00%
H2XYB3              	27.62%		
Bootstrap support for H2XQT6 as seed ortholog is 21%.
Alternative seed ortholog is F6S2J4 (32 bits away from this cluster)
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #65. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 C.trachomatis:205

F6XXF0              	100.00%		O84065              	100.00%
Bootstrap support for F6XXF0 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #66. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 C.trachomatis:205

F7AFR6              	100.00%		O84345              	100.00%
Bootstrap support for F7AFR6 as seed ortholog is 85%.
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #67. Best score 203 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 C.trachomatis:203

F6X034              	100.00%		O84081              	100.00%
Bootstrap support for F6X034 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #68. Best score 199 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 C.trachomatis:199

F6Z7S0              	100.00%		O84638              	100.00%
Bootstrap support for F6Z7S0 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #69. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 C.trachomatis:59

F7BBQ0              	100.00%		O84712              	100.00%
Bootstrap support for F7BBQ0 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 99%.

Group of orthologs #70. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.trachomatis:193

F6VBG8              	100.00%		O84006              	100.00%
Bootstrap support for F6VBG8 as seed ortholog is 100%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #71. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.trachomatis:193

F7BKD9              	100.00%		O84859              	100.00%
Bootstrap support for F7BKD9 as seed ortholog is 100%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #72. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.trachomatis:191

H2XU41              	100.00%		O84608              	100.00%
F6QQZ3              	26.74%		
Q68A28              	23.61%		
Bootstrap support for H2XU41 as seed ortholog is 99%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #73. Best score 187 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.trachomatis:187

F6XRP8              	100.00%		O84548              	100.00%
Bootstrap support for F6XRP8 as seed ortholog is 88%.
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #74. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.trachomatis:186

F6RID7              	100.00%		O84332              	100.00%
Bootstrap support for F6RID7 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #75. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.trachomatis:183

F6TCH6              	100.00%		O84007              	100.00%
Bootstrap support for F6TCH6 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #76. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:36 C.trachomatis:180

F6WW36              	100.00%		P38004              	100.00%
H2XRG7              	11.35%		
Bootstrap support for F6WW36 as seed ortholog is 90%.
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #77. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.trachomatis:180

F6VT08              	100.00%		O84247              	100.00%
Bootstrap support for F6VT08 as seed ortholog is 99%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #78. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 C.trachomatis:175

F7BHB2              	100.00%		O84720              	100.00%
Bootstrap support for F7BHB2 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #79. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 C.trachomatis:175

H2XUE4              	100.00%		O84734              	100.00%
Bootstrap support for H2XUE4 as seed ortholog is 100%.
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #80. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 C.trachomatis:174

H2XL55              	100.00%		O84402              	100.00%
F7A4T6              	9.62%		
Bootstrap support for H2XL55 as seed ortholog is 100%.
Bootstrap support for O84402 as seed ortholog is 100%.

Group of orthologs #81. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.trachomatis:171

F6Y9W3              	100.00%		O84234              	100.00%
F6V5B4              	36.45%		
F6SGT8              	34.98%		
H2XL32              	33.68%		
H2XV07              	32.38%		
F6UPM0              	31.95%		
F6VSC2              	30.48%		
F6QN34              	28.31%		
F6VKE2              	26.75%		
F6XQ30              	26.49%		
F6XTN6              	25.89%		
F6YPI9              	24.85%		
F6SIE8              	23.72%		
F6YPZ5              	23.46%		
F6XZF9              	22.77%		
F7BDN3              	22.08%		
F6QSQ2              	20.35%		
F7AFY1              	19.31%		
F6TM37              	19.31%		
F6X9M4              	18.96%		
F6WBL5              	17.32%		
F6WX88              	16.10%		
F7AZV4              	14.55%		
F6SUX9              	11.17%		
F6TAM4              	10.04%		
Bootstrap support for F6Y9W3 as seed ortholog is 100%.
Bootstrap support for O84234 as seed ortholog is 100%.

Group of orthologs #82. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:35 C.trachomatis:166

F6TPR3              	100.00%		O84676              	100.00%
                    	       		O84722              	12.08%
Bootstrap support for F6TPR3 as seed ortholog is 82%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #83. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.trachomatis:166

H2Y050              	100.00%		P18584              	100.00%
Bootstrap support for H2Y050 as seed ortholog is 100%.
Bootstrap support for P18584 as seed ortholog is 100%.

Group of orthologs #84. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 C.trachomatis:165

F6PZD7              	100.00%		O84383              	100.00%
Bootstrap support for F6PZD7 as seed ortholog is 100%.
Bootstrap support for O84383 as seed ortholog is 100%.

Group of orthologs #85. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.trachomatis:160

F6WLH1              	100.00%		O84874              	100.00%
F6U2J1              	93.09%		
F6WLI0              	92.67%		
F6PVI5              	88.54%		
H2XY11              	60.91%		
H2Y0Q1              	46.76%		
Bootstrap support for F6WLH1 as seed ortholog is 100%.
Bootstrap support for O84874 as seed ortholog is 100%.

Group of orthologs #86. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.trachomatis:153

F6SI53              	100.00%		O84596              	100.00%
Bootstrap support for F6SI53 as seed ortholog is 100%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #87. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.trachomatis:153

F6X600              	100.00%		O84752              	100.00%
Bootstrap support for F6X600 as seed ortholog is 100%.
Bootstrap support for O84752 as seed ortholog is 100%.

Group of orthologs #88. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.trachomatis:148

F6QVW6              	100.00%		O84274              	100.00%
Bootstrap support for F6QVW6 as seed ortholog is 100%.
Bootstrap support for O84274 as seed ortholog is 100%.

Group of orthologs #89. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.trachomatis:52

F7A429              	100.00%		O84755              	100.00%
Bootstrap support for F7A429 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 94%.

Group of orthologs #90. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 C.trachomatis:140

F6X211              	100.00%		O84732              	100.00%
H2XSH4              	97.56%		
H2XNA4              	96.75%		
F6X229              	73.26%		
H2XRP2              	17.52%		
H2XY07              	12.96%		
F6W1I6              	8.13%		
Bootstrap support for F6X211 as seed ortholog is 100%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #91. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.trachomatis:56

F6UUA2              	100.00%		O84260              	100.00%
Bootstrap support for F6UUA2 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 90%.

Group of orthologs #92. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.trachomatis:134

F6W2M8              	100.00%		O84727              	100.00%
Bootstrap support for F6W2M8 as seed ortholog is 98%.
Bootstrap support for O84727 as seed ortholog is 100%.

Group of orthologs #93. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.trachomatis:134

F7A4X2              	100.00%		O84123              	100.00%
Bootstrap support for F7A4X2 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #94. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 C.trachomatis:129

F6ZCF4              	100.00%		O84200              	100.00%
Bootstrap support for F6ZCF4 as seed ortholog is 77%.
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #95. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.trachomatis:126

F6TAK8              	100.00%		O84835              	100.00%
Bootstrap support for F6TAK8 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #96. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.trachomatis:124

F6VIT0              	100.00%		O84864              	100.00%
F6QB79              	52.99%		
F7AG00              	34.83%		
F7BAF2              	22.42%		
F6RWK5              	16.91%		
Bootstrap support for F6VIT0 as seed ortholog is 100%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #97. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.trachomatis:124

F6ZUK0              	100.00%		O84579              	100.00%
Bootstrap support for F6ZUK0 as seed ortholog is 100%.
Bootstrap support for O84579 as seed ortholog is 100%.

Group of orthologs #98. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 C.trachomatis:120

H2XS91              	100.00%		O84241              	100.00%
Bootstrap support for H2XS91 as seed ortholog is 100%.
Bootstrap support for O84241 as seed ortholog is 100%.

Group of orthologs #99. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:13 C.trachomatis:116

F6PR96              	100.00%		O84130              	100.00%
F6XGG4              	13.45%		
Bootstrap support for F6PR96 as seed ortholog is 64%.
Alternative seed ortholog is F6VN10 (13 bits away from this cluster)
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #100. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:17 C.trachomatis:112

F6YB01              	100.00%		O84508              	100.00%
F7BBQ5              	69.19%		
Bootstrap support for F6YB01 as seed ortholog is 78%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #101. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 C.trachomatis:110

F6TDZ5              	100.00%		O84442              	100.00%
F6T1J8              	12.52%		
F6UDK5              	6.35%		
F6TWQ7              	6.08%		
Bootstrap support for F6TDZ5 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #102. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.trachomatis:109

F7BBF0              	100.00%		O84353              	100.00%
Bootstrap support for F7BBF0 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #103. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.trachomatis:108

F6XZL0              	100.00%		P66370              	100.00%
Bootstrap support for F6XZL0 as seed ortholog is 99%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #104. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.trachomatis:105

F6ZCS4              	100.00%		O84391              	100.00%
Bootstrap support for F6ZCS4 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #105. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:10 C.trachomatis:104

H2XQ29              	100.00%		O84599              	100.00%
Bootstrap support for H2XQ29 as seed ortholog is 61%.
Alternative seed ortholog is F6S8Z0 (10 bits away from this cluster)
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #106. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.trachomatis:104

H2XY27              	100.00%		O84435              	100.00%
Bootstrap support for H2XY27 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #107. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.trachomatis:99

F6Y4G4              	100.00%		O84782              	100.00%
H2XYE1              	14.96%		
H2XQD5              	12.26%		
H2XVK2              	12.13%		
Bootstrap support for F6Y4G4 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #108. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.trachomatis:97

F6QWW6              	100.00%		O84215              	100.00%
Bootstrap support for F6QWW6 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #109. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.trachomatis:96

F6UUI8              	100.00%		P55137              	100.00%
Bootstrap support for F6UUI8 as seed ortholog is 100%.
Bootstrap support for P55137 as seed ortholog is 100%.

Group of orthologs #110. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.trachomatis:95

F6UF05              	100.00%		O84843              	100.00%
Bootstrap support for F6UF05 as seed ortholog is 100%.
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #111. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.trachomatis:93

F6QL57              	100.00%		O84781              	100.00%
F6UFU1              	59.27%		
H2Y3M9              	36.86%		
F6UGQ7              	28.69%		
H2XXM0              	23.56%		
F6VET4              	22.93%		
H2XLI4              	22.93%		
F6SEQ4              	18.74%		
H2XRG1              	16.13%		
F6S2V0              	14.14%		
Bootstrap support for F6QL57 as seed ortholog is 85%.
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #112. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.trachomatis:92

F6Z7L9              	100.00%		O84212              	100.00%
F7AJ78              	6.14%		
Bootstrap support for F6Z7L9 as seed ortholog is 100%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #113. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.trachomatis:92

F6ST44              	100.00%		O84649              	100.00%
Bootstrap support for F6ST44 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #114. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:30 C.trachomatis:92

F6ZP25              	100.00%		O84822              	100.00%
Bootstrap support for F6ZP25 as seed ortholog is 57%.
Alternative seed ortholog is F6ZDC7 (30 bits away from this cluster)
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #115. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.trachomatis:91

F7AX27              	100.00%		O84390              	100.00%
H2XW88              	21.27%		
Bootstrap support for F7AX27 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #116. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.trachomatis:87

F6TST6              	100.00%		O84350              	100.00%
Bootstrap support for F6TST6 as seed ortholog is 100%.
Bootstrap support for O84350 as seed ortholog is 100%.

Group of orthologs #117. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.trachomatis:86

F6QX56              	100.00%		O84578              	100.00%
F6XVH7              	5.70%		
Bootstrap support for F6QX56 as seed ortholog is 100%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #118. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.trachomatis:86

F6WCB0              	100.00%		O84687              	100.00%
Bootstrap support for F6WCB0 as seed ortholog is 100%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #119. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.trachomatis:86

F6WPK3              	100.00%		O84478              	100.00%
Bootstrap support for F6WPK3 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #120. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.trachomatis:85

H2XYU0              	100.00%		O84650              	100.00%
F6XWW8              	47.72%		
F6SJF0              	16.31%		
Bootstrap support for H2XYU0 as seed ortholog is 100%.
Bootstrap support for O84650 as seed ortholog is 100%.

Group of orthologs #121. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.trachomatis:85

F6UZS7              	100.00%		O84719              	100.00%
Bootstrap support for F6UZS7 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #122. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.trachomatis:84

H2Y0R2              	100.00%		O84338              	100.00%
F6TBI8              	23.67%		
F7ATT1              	23.50%		
F6WAW7              	5.83%		
Bootstrap support for H2Y0R2 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #123. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.trachomatis:82

F6SGU7              	100.00%		P0CD79              	100.00%
H2Y279              	23.99%		
Bootstrap support for F6SGU7 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #124. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.trachomatis:82

F6SN27              	100.00%		O84358              	100.00%
Bootstrap support for F6SN27 as seed ortholog is 100%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #125. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.trachomatis:82

F6ZX12              	100.00%		O84595              	100.00%
Bootstrap support for F6ZX12 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #126. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.trachomatis:81

H2XXT0              	100.00%		O84544              	100.00%
F6YXQ0              	11.19%		
Bootstrap support for H2XXT0 as seed ortholog is 100%.
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #127. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.trachomatis:81

F6PWH7              	100.00%		O84535              	100.00%
Bootstrap support for F6PWH7 as seed ortholog is 100%.
Bootstrap support for O84535 as seed ortholog is 100%.

Group of orthologs #128. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.trachomatis:81

F6Q096              	100.00%		O84530              	100.00%
Bootstrap support for F6Q096 as seed ortholog is 100%.
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #129. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:23 C.trachomatis:20

F7B860              	100.00%		O84154              	100.00%
                    	       		O84204              	100.00%
                    	       		O84696              	23.09%
                    	       		O84695              	13.51%
                    	       		O84205              	11.11%
                    	       		O84660              	5.31%
Bootstrap support for F7B860 as seed ortholog is 81%.
Bootstrap support for O84154 as seed ortholog is 70%.
Alternative seed ortholog is O84691 (20 bits away from this cluster)
Bootstrap support for O84204 as seed ortholog is 71%.
Alternative seed ortholog is O84691 (20 bits away from this cluster)

Group of orthologs #130. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.trachomatis:80

F6WYU9              	100.00%		O84658              	100.00%
Bootstrap support for F6WYU9 as seed ortholog is 100%.
Bootstrap support for O84658 as seed ortholog is 100%.

Group of orthologs #131. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.trachomatis:77

F6XPS9              	100.00%		O84294              	100.00%
Bootstrap support for F6XPS9 as seed ortholog is 100%.
Bootstrap support for O84294 as seed ortholog is 100%.

Group of orthologs #132. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.trachomatis:74

F6U6C0              	100.00%		O84665              	100.00%
                    	       		O84108              	6.70%
Bootstrap support for F6U6C0 as seed ortholog is 100%.
Bootstrap support for O84665 as seed ortholog is 100%.

Group of orthologs #133. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.trachomatis:74

F6Y089              	100.00%		O84611              	100.00%
Bootstrap support for F6Y089 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #134. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.trachomatis:73

F6ZVT2              	100.00%		O84686              	100.00%
Bootstrap support for F6ZVT2 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #135. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.trachomatis:71

H2XZZ6              	100.00%		O84680              	100.00%
F6W1F7              	28.72%		
F6V299              	19.45%		
Q4H383              	12.27%		
H2XJG5              	8.49%		
F7BJ92              	8.09%		
H2XR98              	8.09%		
F6X159              	7.83%		
F6YEI6              	7.44%		
F7B9D6              	7.18%		
F7A0P0              	7.18%		
F7AZI0              	6.79%		
F6S4F7              	6.79%		
F6V890              	6.53%		
H2XWT4              	5.87%		
F6Z9D3              	5.87%		
H2XLH6              	5.09%		
Bootstrap support for H2XZZ6 as seed ortholog is 100%.
Bootstrap support for O84680 as seed ortholog is 100%.

Group of orthologs #136. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.trachomatis:71

F6RGQ1              	100.00%		O84318              	100.00%
Bootstrap support for F6RGQ1 as seed ortholog is 100%.
Bootstrap support for O84318 as seed ortholog is 100%.

Group of orthologs #137. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.trachomatis:71

H2XR58              	100.00%		O84499              	100.00%
Bootstrap support for H2XR58 as seed ortholog is 100%.
Bootstrap support for O84499 as seed ortholog is 100%.

Group of orthologs #138. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.trachomatis:70

F6VA08              	100.00%		O84750              	100.00%
Bootstrap support for F6VA08 as seed ortholog is 100%.
Bootstrap support for O84750 as seed ortholog is 100%.

Group of orthologs #139. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.trachomatis:69

F6U3K8              	100.00%		O84468              	100.00%
Bootstrap support for F6U3K8 as seed ortholog is 100%.
Bootstrap support for O84468 as seed ortholog is 100%.

Group of orthologs #140. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.trachomatis:69

F6UU76              	100.00%		O84127              	100.00%
Bootstrap support for F6UU76 as seed ortholog is 100%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #141. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 C.trachomatis:68

F7AUH4              	100.00%		O84321              	100.00%
Bootstrap support for F7AUH4 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #142. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.trachomatis:67

F6T9R1              	100.00%		P0CE03              	100.00%
Bootstrap support for F6T9R1 as seed ortholog is 100%.
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #143. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.trachomatis:67

F7AUU8              	100.00%		O84139              	100.00%
Bootstrap support for F7AUU8 as seed ortholog is 100%.
Bootstrap support for O84139 as seed ortholog is 100%.

Group of orthologs #144. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.trachomatis:66

F7A9X4              	100.00%		O84379              	100.00%
F6ZSG1              	71.77%		
F6ZS22              	64.29%		
F6WDV1              	37.79%		
F6TBT3              	34.56%		
F6YYX0              	34.33%		
F7B629              	32.03%		
F6VYA1              	28.80%		
F7AGY9              	28.80%		
F6WSG2              	28.23%		
F6YJM6              	25.92%		
F6W4G0              	21.54%		
Bootstrap support for F7A9X4 as seed ortholog is 100%.
Bootstrap support for O84379 as seed ortholog is 100%.

Group of orthologs #145. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.trachomatis:66

F6ZY44              	100.00%		O84547              	100.00%
Bootstrap support for F6ZY44 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #146. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.trachomatis:65

F6VSM2              	100.00%		P36424              	100.00%
Bootstrap support for F6VSM2 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #147. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.trachomatis:64

F6YJ69              	100.00%		O84218              	100.00%
F6YJ55              	74.45%		
H2Y1T7              	50.40%		
F6WY28              	43.84%		
F6XMJ7              	32.80%		
F6YP78              	30.72%		
F6WN12              	27.96%		
Bootstrap support for F6YJ69 as seed ortholog is 100%.
Bootstrap support for O84218 as seed ortholog is 100%.

Group of orthologs #148. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.trachomatis:64

H2XV19              	100.00%		O84684              	100.00%
Bootstrap support for H2XV19 as seed ortholog is 100%.
Bootstrap support for O84684 as seed ortholog is 100%.

Group of orthologs #149. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.trachomatis:64

H2XXH1              	100.00%		O84128              	100.00%
Bootstrap support for H2XXH1 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #150. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.trachomatis:63

H2XJN8              	100.00%		P0C0Z8              	100.00%
Bootstrap support for H2XJN8 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #151. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 C.trachomatis:62

F6R255              	100.00%		O84469              	100.00%
Bootstrap support for F6R255 as seed ortholog is 52%.
Alternative seed ortholog is F6TLE4 (3 bits away from this cluster)
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #152. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.trachomatis:62

H2Y3F1              	100.00%		O84366              	100.00%
Bootstrap support for H2Y3F1 as seed ortholog is 100%.
Bootstrap support for O84366 as seed ortholog is 100%.

Group of orthologs #153. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.trachomatis:61

H2XY20              	100.00%		O84284              	100.00%
Bootstrap support for H2XY20 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #154. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.trachomatis:60

F6ZIB9              	100.00%		O84421              	100.00%
                    	       		O84071              	9.62%
Bootstrap support for F6ZIB9 as seed ortholog is 100%.
Bootstrap support for O84421 as seed ortholog is 100%.

Group of orthologs #155. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.trachomatis:58

H2Y369              	100.00%		O84207              	100.00%
F7AHM9              	40.32%		
F6XHR2              	33.21%		
F6VSV8              	21.05%		
Bootstrap support for H2Y369 as seed ortholog is 100%.
Bootstrap support for O84207 as seed ortholog is 100%.

Group of orthologs #156. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.trachomatis:7

F6YVG2              	100.00%		O84545              	100.00%
Bootstrap support for F6YVG2 as seed ortholog is 100%.
Bootstrap support for O84545 as seed ortholog is 61%.
Alternative seed ortholog is O84408 (7 bits away from this cluster)

Group of orthologs #157. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.trachomatis:57

H2XWE4              	100.00%		P0A4C8              	100.00%
Bootstrap support for H2XWE4 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #158. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.trachomatis:56

H2XNW6              	100.00%		O84618              	100.00%
H2XLB1              	43.75%		
Bootstrap support for H2XNW6 as seed ortholog is 100%.
Bootstrap support for O84618 as seed ortholog is 100%.

Group of orthologs #159. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.trachomatis:56

F6TXT5              	100.00%		O84527              	100.00%
Bootstrap support for F6TXT5 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #160. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.trachomatis:55

F6YZ79              	100.00%		O84655              	100.00%
Bootstrap support for F6YZ79 as seed ortholog is 100%.
Bootstrap support for O84655 as seed ortholog is 100%.

Group of orthologs #161. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.trachomatis:54

H2Y2A8              	100.00%		P26623              	100.00%
Bootstrap support for H2Y2A8 as seed ortholog is 100%.
Bootstrap support for P26623 as seed ortholog is 100%.

Group of orthologs #162. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.trachomatis:53

F7B2L3              	100.00%		P66480              	100.00%
Bootstrap support for F7B2L3 as seed ortholog is 100%.
Bootstrap support for P66480 as seed ortholog is 100%.

Group of orthologs #163. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.trachomatis:52

F6R0P0              	100.00%		P0CE02              	100.00%
Bootstrap support for F6R0P0 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #164. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.trachomatis:52

F6XR12              	100.00%		O84533              	100.00%
Bootstrap support for F6XR12 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #165. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.trachomatis:51

F7B1W3              	100.00%		O84032              	100.00%
Bootstrap support for F7B1W3 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.

Group of orthologs #166. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.trachomatis:51

H2Y1Y8              	100.00%		P0CD81              	100.00%
Bootstrap support for H2Y1Y8 as seed ortholog is 100%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #167. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.trachomatis:49

H2Y076              	100.00%		O84160              	100.00%
                    	       		O84159              	21.28%
                    	       		O84156              	13.24%
                    	       		O84086              	12.06%
                    	       		O84157              	6.38%
Bootstrap support for H2Y076 as seed ortholog is 100%.
Bootstrap support for O84160 as seed ortholog is 100%.

Group of orthologs #168. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.trachomatis:49

F6WBK6              	100.00%		O84689              	100.00%
Bootstrap support for F6WBK6 as seed ortholog is 100%.
Bootstrap support for O84689 as seed ortholog is 100%.

Group of orthologs #169. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.trachomatis:48

F6Q8V8              	100.00%		P0CE06              	100.00%
Bootstrap support for F6Q8V8 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #170. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.trachomatis:47

F6S7U7              	100.00%		O84778              	100.00%
F6XHC0              	8.80%		
Bootstrap support for F6S7U7 as seed ortholog is 100%.
Bootstrap support for O84778 as seed ortholog is 100%.

Group of orthologs #171. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.trachomatis:47

F6VMC6              	100.00%		O84507              	100.00%
Bootstrap support for F6VMC6 as seed ortholog is 100%.
Bootstrap support for O84507 as seed ortholog is 100%.

Group of orthologs #172. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.trachomatis:47

F7ALL0              	100.00%		P0CD84              	100.00%
Bootstrap support for F7ALL0 as seed ortholog is 100%.
Bootstrap support for P0CD84 as seed ortholog is 100%.

Group of orthologs #173. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 C.trachomatis:46

H2XZM3              	100.00%		O84219              	100.00%
Bootstrap support for H2XZM3 as seed ortholog is 100%.
Bootstrap support for O84219 as seed ortholog is 100%.

Group of orthologs #174. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 C.trachomatis:46

H2Y340              	100.00%		O84792              	100.00%
Bootstrap support for H2Y340 as seed ortholog is 100%.
Bootstrap support for O84792 as seed ortholog is 100%.

Group of orthologs #175. Best score 44 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 C.trachomatis:44

F6ZFW2              	100.00%		O84395              	100.00%
Bootstrap support for F6ZFW2 as seed ortholog is 100%.
Bootstrap support for O84395 as seed ortholog is 100%.

Group of orthologs #176. Best score 44 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 C.trachomatis:44

H2XJN3              	100.00%		O84464              	100.00%
Bootstrap support for H2XJN3 as seed ortholog is 100%.
Bootstrap support for O84464 as seed ortholog is 100%.

Group of orthologs #177. Best score 41 bits
Score difference with first non-orthologous sequence - C.intestinalis:41 C.trachomatis:41

F6Q9J1              	100.00%		O84682              	100.00%
F6Q9B5              	72.01%		
F7B0A7              	38.54%		
F7BH30              	34.04%		
F6YFT9              	22.78%		
Bootstrap support for F6Q9J1 as seed ortholog is 100%.
Bootstrap support for O84682 as seed ortholog is 100%.