###################################
1991 groups of orthologs
2526 in-paralogs from C.intestinalis
2302 in-paralogs from C.militaris
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 2092 bits
Score difference with first non-orthologous sequence - C.intestinalis:2092 C.militaris:753

F6ZLB7              	100.00%		G3JLQ3              	100.00%
Bootstrap support for F6ZLB7 as seed ortholog is 100%.
Bootstrap support for G3JLQ3 as seed ortholog is 100%.

Group of orthologs #2. Best score 1869 bits
Score difference with first non-orthologous sequence - C.intestinalis:1869 C.militaris:1869

F7AMF6              	100.00%		G3JMH6              	100.00%
Bootstrap support for F7AMF6 as seed ortholog is 100%.
Bootstrap support for G3JMH6 as seed ortholog is 100%.

Group of orthologs #3. Best score 1783 bits
Score difference with first non-orthologous sequence - C.intestinalis:1783 C.militaris:1783

F6T0F1              	100.00%		G3JUL1              	100.00%
Bootstrap support for F6T0F1 as seed ortholog is 100%.
Bootstrap support for G3JUL1 as seed ortholog is 100%.

Group of orthologs #4. Best score 1613 bits
Score difference with first non-orthologous sequence - C.intestinalis:1613 C.militaris:1613

F6WUQ7              	100.00%		G3J7V3              	100.00%
Bootstrap support for F6WUQ7 as seed ortholog is 100%.
Bootstrap support for G3J7V3 as seed ortholog is 100%.

Group of orthologs #5. Best score 1586 bits
Score difference with first non-orthologous sequence - C.intestinalis:1586 C.militaris:846

F6SUC2              	100.00%		G3JJZ0              	100.00%
Bootstrap support for F6SUC2 as seed ortholog is 100%.
Bootstrap support for G3JJZ0 as seed ortholog is 100%.

Group of orthologs #6. Best score 1317 bits
Score difference with first non-orthologous sequence - C.intestinalis:1317 C.militaris:639

F6QR00              	100.00%		G3JN95              	100.00%
Bootstrap support for F6QR00 as seed ortholog is 100%.
Bootstrap support for G3JN95 as seed ortholog is 100%.

Group of orthologs #7. Best score 1286 bits
Score difference with first non-orthologous sequence - C.intestinalis:18 C.militaris:1286

F6ZKS0              	100.00%		G3JE06              	100.00%
Bootstrap support for F6ZKS0 as seed ortholog is 59%.
Alternative seed ortholog is F6V620 (18 bits away from this cluster)
Bootstrap support for G3JE06 as seed ortholog is 100%.

Group of orthologs #8. Best score 1270 bits
Score difference with first non-orthologous sequence - C.intestinalis:1270 C.militaris:1270

F6XJM1              	100.00%		G3JM20              	100.00%
                    	       		G3JJA9              	11.01%
Bootstrap support for F6XJM1 as seed ortholog is 100%.
Bootstrap support for G3JM20 as seed ortholog is 100%.

Group of orthologs #9. Best score 1239 bits
Score difference with first non-orthologous sequence - C.intestinalis:695 C.militaris:517

F6YKR9              	100.00%		G3JS84              	100.00%
Bootstrap support for F6YKR9 as seed ortholog is 100%.
Bootstrap support for G3JS84 as seed ortholog is 100%.

Group of orthologs #10. Best score 1181 bits
Score difference with first non-orthologous sequence - C.intestinalis:810 C.militaris:186

F6TWU9              	100.00%		G3J8E7              	100.00%
Bootstrap support for F6TWU9 as seed ortholog is 100%.
Bootstrap support for G3J8E7 as seed ortholog is 99%.

Group of orthologs #11. Best score 1174 bits
Score difference with first non-orthologous sequence - C.intestinalis:1031 C.militaris:1174

F7AKQ3              	100.00%		G3JPW1              	100.00%
Bootstrap support for F7AKQ3 as seed ortholog is 100%.
Bootstrap support for G3JPW1 as seed ortholog is 100%.

Group of orthologs #12. Best score 1129 bits
Score difference with first non-orthologous sequence - C.intestinalis:1129 C.militaris:1129

F6SXA4              	100.00%		G3J7F8              	100.00%
Bootstrap support for F6SXA4 as seed ortholog is 100%.
Bootstrap support for G3J7F8 as seed ortholog is 100%.

Group of orthologs #13. Best score 1119 bits
Score difference with first non-orthologous sequence - C.intestinalis:697 C.militaris:852

F6VLN4              	100.00%		G3J7E5              	100.00%
Bootstrap support for F6VLN4 as seed ortholog is 100%.
Bootstrap support for G3J7E5 as seed ortholog is 100%.

Group of orthologs #14. Best score 1103 bits
Score difference with first non-orthologous sequence - C.intestinalis:548 C.militaris:1103

F6W0Y5              	100.00%		G3JST7              	100.00%
F6V519              	23.12%		
Bootstrap support for F6W0Y5 as seed ortholog is 100%.
Bootstrap support for G3JST7 as seed ortholog is 100%.

Group of orthologs #15. Best score 1081 bits
Score difference with first non-orthologous sequence - C.intestinalis:1081 C.militaris:1081

H2XJT1              	100.00%		G3J2L1              	100.00%
Bootstrap support for H2XJT1 as seed ortholog is 100%.
Bootstrap support for G3J2L1 as seed ortholog is 100%.

Group of orthologs #16. Best score 1076 bits
Score difference with first non-orthologous sequence - C.intestinalis:957 C.militaris:746

F6WXT4              	100.00%		G3JQW4              	100.00%
Bootstrap support for F6WXT4 as seed ortholog is 100%.
Bootstrap support for G3JQW4 as seed ortholog is 100%.

Group of orthologs #17. Best score 1069 bits
Score difference with first non-orthologous sequence - C.intestinalis:912 C.militaris:643

F6XKY1              	100.00%		G3JDW6              	100.00%
Bootstrap support for F6XKY1 as seed ortholog is 100%.
Bootstrap support for G3JDW6 as seed ortholog is 100%.

Group of orthologs #18. Best score 1042 bits
Score difference with first non-orthologous sequence - C.intestinalis:1042 C.militaris:1042

F6Y8C3              	100.00%		G3JNR3              	100.00%
Bootstrap support for F6Y8C3 as seed ortholog is 100%.
Bootstrap support for G3JNR3 as seed ortholog is 100%.

Group of orthologs #19. Best score 1029 bits
Score difference with first non-orthologous sequence - C.intestinalis:1029 C.militaris:695

F6WCR1              	100.00%		G3J4R0              	100.00%
Bootstrap support for F6WCR1 as seed ortholog is 100%.
Bootstrap support for G3J4R0 as seed ortholog is 100%.

Group of orthologs #20. Best score 1024 bits
Score difference with first non-orthologous sequence - C.intestinalis:1024 C.militaris:1024

F7AKG2              	100.00%		G3JE91              	100.00%
Bootstrap support for F7AKG2 as seed ortholog is 100%.
Bootstrap support for G3JE91 as seed ortholog is 100%.

Group of orthologs #21. Best score 1015 bits
Score difference with first non-orthologous sequence - C.intestinalis:1015 C.militaris:1015

F6YN07              	100.00%		G3JU79              	100.00%
Bootstrap support for F6YN07 as seed ortholog is 100%.
Bootstrap support for G3JU79 as seed ortholog is 100%.

Group of orthologs #22. Best score 1009 bits
Score difference with first non-orthologous sequence - C.intestinalis:494 C.militaris:393

F6UYA6              	100.00%		G3JK37              	100.00%
Bootstrap support for F6UYA6 as seed ortholog is 100%.
Bootstrap support for G3JK37 as seed ortholog is 100%.

Group of orthologs #23. Best score 1005 bits
Score difference with first non-orthologous sequence - C.intestinalis:1005 C.militaris:1005

F6U4V1              	100.00%		G3JQ74              	100.00%
Bootstrap support for F6U4V1 as seed ortholog is 100%.
Bootstrap support for G3JQ74 as seed ortholog is 100%.

Group of orthologs #24. Best score 1003 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 C.militaris:334

F6ZHQ8              	100.00%		G3J504              	100.00%
Bootstrap support for F6ZHQ8 as seed ortholog is 99%.
Bootstrap support for G3J504 as seed ortholog is 100%.

Group of orthologs #25. Best score 1002 bits
Score difference with first non-orthologous sequence - C.intestinalis:321 C.militaris:282

F6PGX9              	100.00%		G3JQT5              	100.00%
                    	       		G3JIW0              	6.37%
Bootstrap support for F6PGX9 as seed ortholog is 99%.
Bootstrap support for G3JQT5 as seed ortholog is 99%.

Group of orthologs #26. Best score 997 bits
Score difference with first non-orthologous sequence - C.intestinalis:997 C.militaris:565

Q4H2Q8              	100.00%		G3JMZ1              	100.00%
Bootstrap support for Q4H2Q8 as seed ortholog is 100%.
Bootstrap support for G3JMZ1 as seed ortholog is 100%.

Group of orthologs #27. Best score 991 bits
Score difference with first non-orthologous sequence - C.intestinalis:991 C.militaris:991

F6ZP18              	100.00%		G3JPQ9              	100.00%
Bootstrap support for F6ZP18 as seed ortholog is 100%.
Bootstrap support for G3JPQ9 as seed ortholog is 100%.

Group of orthologs #28. Best score 985 bits
Score difference with first non-orthologous sequence - C.intestinalis:869 C.militaris:627

H2XSH4              	100.00%		G3JLH3              	100.00%
H2XNA4              	96.11%		
F6X211              	95.21%		
F6X229              	50.40%		
Bootstrap support for H2XSH4 as seed ortholog is 100%.
Bootstrap support for G3JLH3 as seed ortholog is 100%.

Group of orthologs #29. Best score 985 bits
Score difference with first non-orthologous sequence - C.intestinalis:985 C.militaris:985

F6RL41              	100.00%		G3J8X1              	100.00%
Bootstrap support for F6RL41 as seed ortholog is 100%.
Bootstrap support for G3J8X1 as seed ortholog is 100%.

Group of orthologs #30. Best score 985 bits
Score difference with first non-orthologous sequence - C.intestinalis:805 C.militaris:985

H2XQK9              	100.00%		G3J4I8              	100.00%
Bootstrap support for H2XQK9 as seed ortholog is 100%.
Bootstrap support for G3J4I8 as seed ortholog is 100%.

Group of orthologs #31. Best score 974 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:303

F6W8I3              	100.00%		G3JEN3              	100.00%
Bootstrap support for F6W8I3 as seed ortholog is 98%.
Bootstrap support for G3JEN3 as seed ortholog is 100%.

Group of orthologs #32. Best score 959 bits
Score difference with first non-orthologous sequence - C.intestinalis:959 C.militaris:959

F6Z5U4              	100.00%		G3J844              	100.00%
Bootstrap support for F6Z5U4 as seed ortholog is 100%.
Bootstrap support for G3J844 as seed ortholog is 100%.

Group of orthologs #33. Best score 956 bits
Score difference with first non-orthologous sequence - C.intestinalis:956 C.militaris:956

H2XZY7              	100.00%		G3JAM8              	100.00%
H2Y265              	12.86%		
H2XWY7              	12.76%		
F7AY44              	12.44%		
Bootstrap support for H2XZY7 as seed ortholog is 100%.
Bootstrap support for G3JAM8 as seed ortholog is 100%.

Group of orthologs #34. Best score 951 bits
Score difference with first non-orthologous sequence - C.intestinalis:951 C.militaris:951

F6W1H2              	100.00%		G3J3J3              	100.00%
Bootstrap support for F6W1H2 as seed ortholog is 100%.
Bootstrap support for G3J3J3 as seed ortholog is 100%.

Group of orthologs #35. Best score 916 bits
Score difference with first non-orthologous sequence - C.intestinalis:916 C.militaris:916

F7BKT8              	100.00%		G3JU04              	100.00%
Bootstrap support for F7BKT8 as seed ortholog is 100%.
Bootstrap support for G3JU04 as seed ortholog is 100%.

Group of orthologs #36. Best score 912 bits
Score difference with first non-orthologous sequence - C.intestinalis:912 C.militaris:487

F6S181              	100.00%		G3JS57              	100.00%
Bootstrap support for F6S181 as seed ortholog is 100%.
Bootstrap support for G3JS57 as seed ortholog is 100%.

Group of orthologs #37. Best score 899 bits
Score difference with first non-orthologous sequence - C.intestinalis:899 C.militaris:899

F6UM75              	100.00%		G3JB92              	100.00%
Bootstrap support for F6UM75 as seed ortholog is 100%.
Bootstrap support for G3JB92 as seed ortholog is 100%.

Group of orthologs #38. Best score 898 bits
Score difference with first non-orthologous sequence - C.intestinalis:898 C.militaris:898

F6YYG7              	100.00%		G3JEZ4              	100.00%
Bootstrap support for F6YYG7 as seed ortholog is 100%.
Bootstrap support for G3JEZ4 as seed ortholog is 100%.

Group of orthologs #39. Best score 884 bits
Score difference with first non-orthologous sequence - C.intestinalis:674 C.militaris:294

F6S2T0              	100.00%		G3J9D6              	100.00%
F6S2J4              	52.86%		
F6U3N6              	22.14%		
F6U4J4              	20.48%		
F6RZC1              	15.42%		
F6WVU8              	15.36%		
Bootstrap support for F6S2T0 as seed ortholog is 100%.
Bootstrap support for G3J9D6 as seed ortholog is 99%.

Group of orthologs #40. Best score 883 bits
Score difference with first non-orthologous sequence - C.intestinalis:813 C.militaris:883

F6YD90              	100.00%		G3J2N7              	100.00%
Bootstrap support for F6YD90 as seed ortholog is 100%.
Bootstrap support for G3J2N7 as seed ortholog is 100%.

Group of orthologs #41. Best score 883 bits
Score difference with first non-orthologous sequence - C.intestinalis:536 C.militaris:509

H2XZZ5              	100.00%		G3JQP4              	100.00%
Bootstrap support for H2XZZ5 as seed ortholog is 100%.
Bootstrap support for G3JQP4 as seed ortholog is 100%.

Group of orthologs #42. Best score 870 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:275

F6SXM4              	100.00%		G3JHM3              	100.00%
Bootstrap support for F6SXM4 as seed ortholog is 99%.
Bootstrap support for G3JHM3 as seed ortholog is 100%.

Group of orthologs #43. Best score 847 bits
Score difference with first non-orthologous sequence - C.intestinalis:738 C.militaris:615

F6YYE4              	100.00%		G3JJ39              	100.00%
Bootstrap support for F6YYE4 as seed ortholog is 100%.
Bootstrap support for G3JJ39 as seed ortholog is 100%.

Group of orthologs #44. Best score 844 bits
Score difference with first non-orthologous sequence - C.intestinalis:844 C.militaris:844

F6SWL4              	100.00%		G3J2U4              	100.00%
Bootstrap support for F6SWL4 as seed ortholog is 100%.
Bootstrap support for G3J2U4 as seed ortholog is 100%.

Group of orthologs #45. Best score 842 bits
Score difference with first non-orthologous sequence - C.intestinalis:842 C.militaris:842

F6QRG3              	100.00%		G3J9Q2              	100.00%
Bootstrap support for F6QRG3 as seed ortholog is 100%.
Bootstrap support for G3J9Q2 as seed ortholog is 100%.

Group of orthologs #46. Best score 841 bits
Score difference with first non-orthologous sequence - C.intestinalis:841 C.militaris:841

H2XKD5              	100.00%		G3JDA1              	100.00%
Bootstrap support for H2XKD5 as seed ortholog is 100%.
Bootstrap support for G3JDA1 as seed ortholog is 100%.

Group of orthologs #47. Best score 838 bits
Score difference with first non-orthologous sequence - C.intestinalis:772 C.militaris:723

F6XZ43              	100.00%		G3JKH3              	100.00%
Bootstrap support for F6XZ43 as seed ortholog is 100%.
Bootstrap support for G3JKH3 as seed ortholog is 100%.

Group of orthologs #48. Best score 829 bits
Score difference with first non-orthologous sequence - C.intestinalis:829 C.militaris:829

F6Y1Q3              	100.00%		G3JM00              	100.00%
Bootstrap support for F6Y1Q3 as seed ortholog is 100%.
Bootstrap support for G3JM00 as seed ortholog is 100%.

Group of orthologs #49. Best score 824 bits
Score difference with first non-orthologous sequence - C.intestinalis:824 C.militaris:824

F6UE33              	100.00%		G3JGW7              	100.00%
Bootstrap support for F6UE33 as seed ortholog is 100%.
Bootstrap support for G3JGW7 as seed ortholog is 100%.

Group of orthologs #50. Best score 822 bits
Score difference with first non-orthologous sequence - C.intestinalis:822 C.militaris:822

F6Z743              	100.00%		G3J5T6              	100.00%
Bootstrap support for F6Z743 as seed ortholog is 100%.
Bootstrap support for G3J5T6 as seed ortholog is 100%.

Group of orthologs #51. Best score 821 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 C.militaris:821

H2Y0Q1              	100.00%		G3JPS2              	100.00%
Bootstrap support for H2Y0Q1 as seed ortholog is 100%.
Bootstrap support for G3JPS2 as seed ortholog is 100%.

Group of orthologs #52. Best score 819 bits
Score difference with first non-orthologous sequence - C.intestinalis:819 C.militaris:819

F6U4L6              	100.00%		G3JRL0              	100.00%
Bootstrap support for F6U4L6 as seed ortholog is 100%.
Bootstrap support for G3JRL0 as seed ortholog is 100%.

Group of orthologs #53. Best score 803 bits
Score difference with first non-orthologous sequence - C.intestinalis:375 C.militaris:803

H2Y1Z9              	100.00%		G3JJY0              	100.00%
Bootstrap support for H2Y1Z9 as seed ortholog is 100%.
Bootstrap support for G3JJY0 as seed ortholog is 100%.

Group of orthologs #54. Best score 801 bits
Score difference with first non-orthologous sequence - C.intestinalis:801 C.militaris:801

H2XJF1              	100.00%		G3J8M7              	100.00%
Bootstrap support for H2XJF1 as seed ortholog is 100%.
Bootstrap support for G3J8M7 as seed ortholog is 100%.

Group of orthologs #55. Best score 799 bits
Score difference with first non-orthologous sequence - C.intestinalis:281 C.militaris:337

H2XU53              	100.00%		G3JJ21              	100.00%
Bootstrap support for H2XU53 as seed ortholog is 100%.
Bootstrap support for G3JJ21 as seed ortholog is 100%.

Group of orthologs #56. Best score 790 bits
Score difference with first non-orthologous sequence - C.intestinalis:790 C.militaris:790

F6UXR3              	100.00%		G3JKX0              	100.00%
Bootstrap support for F6UXR3 as seed ortholog is 100%.
Bootstrap support for G3JKX0 as seed ortholog is 100%.

Group of orthologs #57. Best score 788 bits
Score difference with first non-orthologous sequence - C.intestinalis:788 C.militaris:788

H2XJT5              	100.00%		G3J9H9              	100.00%
Bootstrap support for H2XJT5 as seed ortholog is 100%.
Bootstrap support for G3J9H9 as seed ortholog is 100%.

Group of orthologs #58. Best score 777 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 C.militaris:777

F6XU15              	100.00%		G3JKC9              	100.00%
Bootstrap support for F6XU15 as seed ortholog is 69%.
Alternative seed ortholog is F7BPQ7 (33 bits away from this cluster)
Bootstrap support for G3JKC9 as seed ortholog is 100%.

Group of orthologs #59. Best score 774 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 C.militaris:547

F6Q5L9              	100.00%		G3JG10              	100.00%
Bootstrap support for F6Q5L9 as seed ortholog is 99%.
Bootstrap support for G3JG10 as seed ortholog is 100%.

Group of orthologs #60. Best score 767 bits
Score difference with first non-orthologous sequence - C.intestinalis:767 C.militaris:373

F6Z5E6              	100.00%		G3JAA7              	100.00%
Bootstrap support for F6Z5E6 as seed ortholog is 100%.
Bootstrap support for G3JAA7 as seed ortholog is 100%.

Group of orthologs #61. Best score 762 bits
Score difference with first non-orthologous sequence - C.intestinalis:762 C.militaris:443

F7ADN1              	100.00%		G3J4B3              	100.00%
Bootstrap support for F7ADN1 as seed ortholog is 100%.
Bootstrap support for G3J4B3 as seed ortholog is 99%.

Group of orthologs #62. Best score 760 bits
Score difference with first non-orthologous sequence - C.intestinalis:503 C.militaris:392

L7N0T3              	100.00%		G3JDK7              	100.00%
F6SYL0              	94.12%		G3JMJ3              	37.01%
Bootstrap support for L7N0T3 as seed ortholog is 100%.
Bootstrap support for G3JDK7 as seed ortholog is 100%.

Group of orthologs #63. Best score 760 bits
Score difference with first non-orthologous sequence - C.intestinalis:760 C.militaris:760

F6VC80              	100.00%		G3JLN9              	100.00%
Bootstrap support for F6VC80 as seed ortholog is 100%.
Bootstrap support for G3JLN9 as seed ortholog is 100%.

Group of orthologs #64. Best score 756 bits
Score difference with first non-orthologous sequence - C.intestinalis:756 C.militaris:756

F6QX34              	100.00%		G3JHM0              	100.00%
Bootstrap support for F6QX34 as seed ortholog is 100%.
Bootstrap support for G3JHM0 as seed ortholog is 100%.

Group of orthologs #65. Best score 755 bits
Score difference with first non-orthologous sequence - C.intestinalis:651 C.militaris:566

F6WUJ1              	100.00%		G3J2U8              	100.00%
Bootstrap support for F6WUJ1 as seed ortholog is 100%.
Bootstrap support for G3J2U8 as seed ortholog is 100%.

Group of orthologs #66. Best score 753 bits
Score difference with first non-orthologous sequence - C.intestinalis:753 C.militaris:753

F7BJA3              	100.00%		G3J3E0              	100.00%
Bootstrap support for F7BJA3 as seed ortholog is 100%.
Bootstrap support for G3J3E0 as seed ortholog is 100%.

Group of orthologs #67. Best score 752 bits
Score difference with first non-orthologous sequence - C.intestinalis:752 C.militaris:752

H2XLC6              	100.00%		G3J3J4              	100.00%
Bootstrap support for H2XLC6 as seed ortholog is 100%.
Bootstrap support for G3J3J4 as seed ortholog is 100%.

Group of orthologs #68. Best score 749 bits
Score difference with first non-orthologous sequence - C.intestinalis:297 C.militaris:749

F6WRK8              	100.00%		G3JD91              	100.00%
Bootstrap support for F6WRK8 as seed ortholog is 100%.
Bootstrap support for G3JD91 as seed ortholog is 100%.

Group of orthologs #69. Best score 743 bits
Score difference with first non-orthologous sequence - C.intestinalis:743 C.militaris:743

F6XN27              	100.00%		G3JI71              	100.00%
Bootstrap support for F6XN27 as seed ortholog is 100%.
Bootstrap support for G3JI71 as seed ortholog is 100%.

Group of orthologs #70. Best score 740 bits
Score difference with first non-orthologous sequence - C.intestinalis:740 C.militaris:613

F6Y4K6              	100.00%		G3JIQ5              	100.00%
Bootstrap support for F6Y4K6 as seed ortholog is 100%.
Bootstrap support for G3JIQ5 as seed ortholog is 100%.

Group of orthologs #71. Best score 738 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:738

F6YNJ1              	100.00%		G3JNX7              	100.00%
Bootstrap support for F6YNJ1 as seed ortholog is 99%.
Bootstrap support for G3JNX7 as seed ortholog is 100%.

Group of orthologs #72. Best score 737 bits
Score difference with first non-orthologous sequence - C.intestinalis:517 C.militaris:74

F6XCZ8              	100.00%		G3JI79              	100.00%
F7B0Q2              	81.96%		
F6QB29              	81.44%		
F6SJ24              	80.93%		
F6QB20              	77.84%		
L7N0T5              	75.26%		
F6UV18              	14.95%		
Bootstrap support for F6XCZ8 as seed ortholog is 100%.
Bootstrap support for G3JI79 as seed ortholog is 98%.

Group of orthologs #73. Best score 736 bits
Score difference with first non-orthologous sequence - C.intestinalis:736 C.militaris:363

H2XRP2              	100.00%		G3JJH4              	100.00%
Bootstrap support for H2XRP2 as seed ortholog is 100%.
Bootstrap support for G3JJH4 as seed ortholog is 100%.

Group of orthologs #74. Best score 734 bits
Score difference with first non-orthologous sequence - C.intestinalis:424 C.militaris:474

H2XL55              	100.00%		G3JLM5              	100.00%
Bootstrap support for H2XL55 as seed ortholog is 100%.
Bootstrap support for G3JLM5 as seed ortholog is 100%.

Group of orthologs #75. Best score 733 bits
Score difference with first non-orthologous sequence - C.intestinalis:733 C.militaris:733

F6QDE3              	100.00%		G3JE98              	100.00%
Bootstrap support for F6QDE3 as seed ortholog is 100%.
Bootstrap support for G3JE98 as seed ortholog is 100%.

Group of orthologs #76. Best score 727 bits
Score difference with first non-orthologous sequence - C.intestinalis:727 C.militaris:727

F6UE02              	100.00%		G3J372              	100.00%
Bootstrap support for F6UE02 as seed ortholog is 100%.
Bootstrap support for G3J372 as seed ortholog is 100%.

Group of orthologs #77. Best score 726 bits
Score difference with first non-orthologous sequence - C.intestinalis:726 C.militaris:726

F6PV45              	100.00%		G3JE01              	100.00%
Bootstrap support for F6PV45 as seed ortholog is 100%.
Bootstrap support for G3JE01 as seed ortholog is 100%.

Group of orthologs #78. Best score 722 bits
Score difference with first non-orthologous sequence - C.intestinalis:722 C.militaris:722

F7APZ8              	100.00%		G3JG85              	100.00%
Bootstrap support for F7APZ8 as seed ortholog is 100%.
Bootstrap support for G3JG85 as seed ortholog is 100%.

Group of orthologs #79. Best score 716 bits
Score difference with first non-orthologous sequence - C.intestinalis:716 C.militaris:637

F7ABF6              	100.00%		G3JEM0              	100.00%
Bootstrap support for F7ABF6 as seed ortholog is 100%.
Bootstrap support for G3JEM0 as seed ortholog is 100%.

Group of orthologs #80. Best score 710 bits
Score difference with first non-orthologous sequence - C.intestinalis:710 C.militaris:364

F6SI05              	100.00%		G3JLF5              	100.00%
Bootstrap support for F6SI05 as seed ortholog is 100%.
Bootstrap support for G3JLF5 as seed ortholog is 100%.

Group of orthologs #81. Best score 709 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:478

F6UKC4              	100.00%		G3JIB2              	100.00%
Bootstrap support for F6UKC4 as seed ortholog is 100%.
Bootstrap support for G3JIB2 as seed ortholog is 100%.

Group of orthologs #82. Best score 708 bits
Score difference with first non-orthologous sequence - C.intestinalis:654 C.militaris:708

H2XSX9              	100.00%		G3J650              	100.00%
H2XZ08              	31.02%		
F6ZIF2              	19.44%		
F6ZID9              	14.81%		
Bootstrap support for H2XSX9 as seed ortholog is 100%.
Bootstrap support for G3J650 as seed ortholog is 100%.

Group of orthologs #83. Best score 705 bits
Score difference with first non-orthologous sequence - C.intestinalis:147 C.militaris:705

F6TIZ3              	100.00%		G3JI87              	100.00%
Bootstrap support for F6TIZ3 as seed ortholog is 99%.
Bootstrap support for G3JI87 as seed ortholog is 100%.

Group of orthologs #84. Best score 701 bits
Score difference with first non-orthologous sequence - C.intestinalis:701 C.militaris:701

F7A8C2              	100.00%		G3JI77              	100.00%
Bootstrap support for F7A8C2 as seed ortholog is 100%.
Bootstrap support for G3JI77 as seed ortholog is 100%.

Group of orthologs #85. Best score 697 bits
Score difference with first non-orthologous sequence - C.intestinalis:697 C.militaris:95

H2XLC2              	100.00%		G3J460              	100.00%
Bootstrap support for H2XLC2 as seed ortholog is 100%.
Bootstrap support for G3J460 as seed ortholog is 98%.

Group of orthologs #86. Best score 693 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.militaris:350

A2SY09              	100.00%		G3JGJ7              	100.00%
F6SCP4              	65.15%		G3JJB9              	44.26%
F6QBJ1              	37.88%		
L7N0T1              	31.82%		
F6T8C7              	30.30%		
F6SDC9              	30.30%		
Bootstrap support for A2SY09 as seed ortholog is 98%.
Bootstrap support for G3JGJ7 as seed ortholog is 100%.

Group of orthologs #87. Best score 693 bits
Score difference with first non-orthologous sequence - C.intestinalis:693 C.militaris:693

F6SI53              	100.00%		G3J9B6              	100.00%
Bootstrap support for F6SI53 as seed ortholog is 100%.
Bootstrap support for G3J9B6 as seed ortholog is 100%.

Group of orthologs #88. Best score 690 bits
Score difference with first non-orthologous sequence - C.intestinalis:690 C.militaris:690

F6W7K5              	100.00%		G3JTQ3              	100.00%
F6W7I3              	79.41%		
Bootstrap support for F6W7K5 as seed ortholog is 100%.
Bootstrap support for G3JTQ3 as seed ortholog is 100%.

Group of orthologs #89. Best score 687 bits
Score difference with first non-orthologous sequence - C.intestinalis:687 C.militaris:687

L7N0S7              	100.00%		G3JJ70              	100.00%
F6RR11              	21.39%		
Bootstrap support for L7N0S7 as seed ortholog is 100%.
Bootstrap support for G3JJ70 as seed ortholog is 100%.

Group of orthologs #90. Best score 683 bits
Score difference with first non-orthologous sequence - C.intestinalis:683 C.militaris:683

F6TPR3              	100.00%		G3JPS3              	100.00%
Bootstrap support for F6TPR3 as seed ortholog is 100%.
Bootstrap support for G3JPS3 as seed ortholog is 100%.

Group of orthologs #91. Best score 682 bits
Score difference with first non-orthologous sequence - C.intestinalis:531 C.militaris:468

F6UCG0              	100.00%		G3J4G5              	100.00%
Bootstrap support for F6UCG0 as seed ortholog is 100%.
Bootstrap support for G3J4G5 as seed ortholog is 100%.

Group of orthologs #92. Best score 676 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:676

F6Q9K0              	100.00%		G3JKE8              	100.00%
Bootstrap support for F6Q9K0 as seed ortholog is 84%.
Bootstrap support for G3JKE8 as seed ortholog is 100%.

Group of orthologs #93. Best score 675 bits
Score difference with first non-orthologous sequence - C.intestinalis:675 C.militaris:675

F7BBW9              	100.00%		G3JFW3              	100.00%
Bootstrap support for F7BBW9 as seed ortholog is 100%.
Bootstrap support for G3JFW3 as seed ortholog is 100%.

Group of orthologs #94. Best score 662 bits
Score difference with first non-orthologous sequence - C.intestinalis:662 C.militaris:271

F6RW91              	100.00%		G3JKH4              	100.00%
Bootstrap support for F6RW91 as seed ortholog is 100%.
Bootstrap support for G3JKH4 as seed ortholog is 99%.

Group of orthologs #95. Best score 661 bits
Score difference with first non-orthologous sequence - C.intestinalis:661 C.militaris:661

F6SBF1              	100.00%		G3J3Q4              	100.00%
Bootstrap support for F6SBF1 as seed ortholog is 100%.
Bootstrap support for G3J3Q4 as seed ortholog is 100%.

Group of orthologs #96. Best score 661 bits
Score difference with first non-orthologous sequence - C.intestinalis:661 C.militaris:661

F6PYU7              	100.00%		G3JG75              	100.00%
Bootstrap support for F6PYU7 as seed ortholog is 100%.
Bootstrap support for G3JG75 as seed ortholog is 100%.

Group of orthologs #97. Best score 660 bits
Score difference with first non-orthologous sequence - C.intestinalis:660 C.militaris:660

F6XMA0              	100.00%		G3JJF6              	100.00%
Bootstrap support for F6XMA0 as seed ortholog is 100%.
Bootstrap support for G3JJF6 as seed ortholog is 100%.

Group of orthologs #98. Best score 657 bits
Score difference with first non-orthologous sequence - C.intestinalis:657 C.militaris:657

F6PZ06              	100.00%		G3JJA1              	100.00%
Bootstrap support for F6PZ06 as seed ortholog is 100%.
Bootstrap support for G3JJA1 as seed ortholog is 100%.

Group of orthologs #99. Best score 656 bits
Score difference with first non-orthologous sequence - C.intestinalis:375 C.militaris:506

F7AJ84              	100.00%		G3JLY4              	100.00%
Bootstrap support for F7AJ84 as seed ortholog is 100%.
Bootstrap support for G3JLY4 as seed ortholog is 100%.

Group of orthologs #100. Best score 650 bits
Score difference with first non-orthologous sequence - C.intestinalis:407 C.militaris:316

F7BA18              	100.00%		G3J9F0              	100.00%
Bootstrap support for F7BA18 as seed ortholog is 100%.
Bootstrap support for G3J9F0 as seed ortholog is 100%.

Group of orthologs #101. Best score 649 bits
Score difference with first non-orthologous sequence - C.intestinalis:390 C.militaris:342

F6Z4G6              	100.00%		G3JCP4              	100.00%
Bootstrap support for F6Z4G6 as seed ortholog is 100%.
Bootstrap support for G3JCP4 as seed ortholog is 100%.

Group of orthologs #102. Best score 648 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 C.militaris:648

H2XSM0              	100.00%		G3JPV5              	100.00%
Bootstrap support for H2XSM0 as seed ortholog is 100%.
Bootstrap support for G3JPV5 as seed ortholog is 100%.

Group of orthologs #103. Best score 646 bits
Score difference with first non-orthologous sequence - C.intestinalis:646 C.militaris:646

F7BEF3              	100.00%		G3JL39              	100.00%
Bootstrap support for F7BEF3 as seed ortholog is 100%.
Bootstrap support for G3JL39 as seed ortholog is 100%.

Group of orthologs #104. Best score 645 bits
Score difference with first non-orthologous sequence - C.intestinalis:645 C.militaris:645

H2XVY7              	100.00%		G3J6W4              	100.00%
Bootstrap support for H2XVY7 as seed ortholog is 100%.
Bootstrap support for G3J6W4 as seed ortholog is 100%.

Group of orthologs #105. Best score 639 bits
Score difference with first non-orthologous sequence - C.intestinalis:639 C.militaris:639

F6PST3              	100.00%		G3JBE2              	100.00%
Bootstrap support for F6PST3 as seed ortholog is 100%.
Bootstrap support for G3JBE2 as seed ortholog is 100%.

Group of orthologs #106. Best score 637 bits
Score difference with first non-orthologous sequence - C.intestinalis:637 C.militaris:637

F6WTE3              	100.00%		G3JFV6              	100.00%
Bootstrap support for F6WTE3 as seed ortholog is 100%.
Bootstrap support for G3JFV6 as seed ortholog is 100%.

Group of orthologs #107. Best score 636 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:486

H2XYN5              	100.00%		G3JSC5              	100.00%
Bootstrap support for H2XYN5 as seed ortholog is 80%.
Bootstrap support for G3JSC5 as seed ortholog is 100%.

Group of orthologs #108. Best score 633 bits
Score difference with first non-orthologous sequence - C.intestinalis:633 C.militaris:633

F7BJC2              	100.00%		G3JF19              	100.00%
Bootstrap support for F7BJC2 as seed ortholog is 100%.
Bootstrap support for G3JF19 as seed ortholog is 100%.

Group of orthologs #109. Best score 632 bits
Score difference with first non-orthologous sequence - C.intestinalis:632 C.militaris:374

F6TZX4              	100.00%		G3JHP0              	100.00%
Bootstrap support for F6TZX4 as seed ortholog is 100%.
Bootstrap support for G3JHP0 as seed ortholog is 100%.

Group of orthologs #110. Best score 630 bits
Score difference with first non-orthologous sequence - C.intestinalis:630 C.militaris:630

F7B8G8              	100.00%		G3J4C2              	100.00%
Bootstrap support for F7B8G8 as seed ortholog is 100%.
Bootstrap support for G3J4C2 as seed ortholog is 100%.

Group of orthologs #111. Best score 629 bits
Score difference with first non-orthologous sequence - C.intestinalis:629 C.militaris:629

F6YFY0              	100.00%		G3JKE0              	100.00%
Bootstrap support for F6YFY0 as seed ortholog is 100%.
Bootstrap support for G3JKE0 as seed ortholog is 100%.

Group of orthologs #112. Best score 627 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 C.militaris:627

F7B9U5              	100.00%		G3JAD3              	100.00%
Bootstrap support for F7B9U5 as seed ortholog is 100%.
Bootstrap support for G3JAD3 as seed ortholog is 100%.

Group of orthologs #113. Best score 624 bits
Score difference with first non-orthologous sequence - C.intestinalis:624 C.militaris:480

F6X2D1              	100.00%		G3JD88              	100.00%
Bootstrap support for F6X2D1 as seed ortholog is 100%.
Bootstrap support for G3JD88 as seed ortholog is 100%.

Group of orthologs #114. Best score 624 bits
Score difference with first non-orthologous sequence - C.intestinalis:624 C.militaris:323

F7AUJ3              	100.00%		G3JKH6              	100.00%
Bootstrap support for F7AUJ3 as seed ortholog is 100%.
Bootstrap support for G3JKH6 as seed ortholog is 100%.

Group of orthologs #115. Best score 623 bits
Score difference with first non-orthologous sequence - C.intestinalis:623 C.militaris:623

F6ZBB5              	100.00%		G3JPT6              	100.00%
Bootstrap support for F6ZBB5 as seed ortholog is 100%.
Bootstrap support for G3JPT6 as seed ortholog is 100%.

Group of orthologs #116. Best score 622 bits
Score difference with first non-orthologous sequence - C.intestinalis:437 C.militaris:622

F6YGU8              	100.00%		G3J3M1              	100.00%
F6RCK1              	13.71%		
Bootstrap support for F6YGU8 as seed ortholog is 100%.
Bootstrap support for G3J3M1 as seed ortholog is 100%.

Group of orthologs #117. Best score 621 bits
Score difference with first non-orthologous sequence - C.intestinalis:332 C.militaris:309

F6THL0              	100.00%		G3JJH0              	100.00%
Bootstrap support for F6THL0 as seed ortholog is 100%.
Bootstrap support for G3JJH0 as seed ortholog is 99%.

Group of orthologs #118. Best score 621 bits
Score difference with first non-orthologous sequence - C.intestinalis:323 C.militaris:460

H2Y3E7              	100.00%		G3J3R8              	100.00%
Bootstrap support for H2Y3E7 as seed ortholog is 100%.
Bootstrap support for G3J3R8 as seed ortholog is 100%.

Group of orthologs #119. Best score 620 bits
Score difference with first non-orthologous sequence - C.intestinalis:367 C.militaris:620

H2XJF2              	100.00%		G3JAC2              	100.00%
Bootstrap support for H2XJF2 as seed ortholog is 100%.
Bootstrap support for G3JAC2 as seed ortholog is 100%.

Group of orthologs #120. Best score 618 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 C.militaris:339

F6UHH9              	100.00%		G3JUA9              	100.00%
Bootstrap support for F6UHH9 as seed ortholog is 99%.
Bootstrap support for G3JUA9 as seed ortholog is 100%.

Group of orthologs #121. Best score 613 bits
Score difference with first non-orthologous sequence - C.intestinalis:470 C.militaris:613

F6YTL6              	100.00%		G3JLY6              	100.00%
Bootstrap support for F6YTL6 as seed ortholog is 100%.
Bootstrap support for G3JLY6 as seed ortholog is 100%.

Group of orthologs #122. Best score 612 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 C.militaris:612

F6PW28              	100.00%		G3JE16              	100.00%
Bootstrap support for F6PW28 as seed ortholog is 99%.
Bootstrap support for G3JE16 as seed ortholog is 100%.

Group of orthologs #123. Best score 611 bits
Score difference with first non-orthologous sequence - C.intestinalis:319 C.militaris:322

F6RKM9              	100.00%		G3J3Y9              	100.00%
Bootstrap support for F6RKM9 as seed ortholog is 100%.
Bootstrap support for G3J3Y9 as seed ortholog is 100%.

Group of orthologs #124. Best score 611 bits
Score difference with first non-orthologous sequence - C.intestinalis:416 C.militaris:419

F6RHK8              	100.00%		G3JJU9              	100.00%
Bootstrap support for F6RHK8 as seed ortholog is 100%.
Bootstrap support for G3JJU9 as seed ortholog is 100%.

Group of orthologs #125. Best score 611 bits
Score difference with first non-orthologous sequence - C.intestinalis:336 C.militaris:424

F6XF93              	100.00%		G3JP92              	100.00%
Bootstrap support for F6XF93 as seed ortholog is 100%.
Bootstrap support for G3JP92 as seed ortholog is 100%.

Group of orthologs #126. Best score 610 bits
Score difference with first non-orthologous sequence - C.intestinalis:610 C.militaris:610

F7B6E8              	100.00%		G3JKA1              	100.00%
Bootstrap support for F7B6E8 as seed ortholog is 100%.
Bootstrap support for G3JKA1 as seed ortholog is 100%.

Group of orthologs #127. Best score 609 bits
Score difference with first non-orthologous sequence - C.intestinalis:609 C.militaris:340

F6XJ08              	100.00%		G3J6C9              	100.00%
Bootstrap support for F6XJ08 as seed ortholog is 100%.
Bootstrap support for G3J6C9 as seed ortholog is 100%.

Group of orthologs #128. Best score 608 bits
Score difference with first non-orthologous sequence - C.intestinalis:608 C.militaris:608

F7A2X8              	100.00%		G3JHE0              	100.00%
Bootstrap support for F7A2X8 as seed ortholog is 100%.
Bootstrap support for G3JHE0 as seed ortholog is 100%.

Group of orthologs #129. Best score 606 bits
Score difference with first non-orthologous sequence - C.intestinalis:606 C.militaris:544

F6SSP0              	100.00%		G3JDB9              	100.00%
Bootstrap support for F6SSP0 as seed ortholog is 100%.
Bootstrap support for G3JDB9 as seed ortholog is 100%.

Group of orthologs #130. Best score 604 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:85

F6YUT1              	100.00%		G3J6K8              	100.00%
Bootstrap support for F6YUT1 as seed ortholog is 99%.
Bootstrap support for G3J6K8 as seed ortholog is 92%.

Group of orthologs #131. Best score 602 bits
Score difference with first non-orthologous sequence - C.intestinalis:602 C.militaris:164

F6U7R9              	100.00%		G3JK92              	100.00%
Bootstrap support for F6U7R9 as seed ortholog is 100%.
Bootstrap support for G3JK92 as seed ortholog is 99%.

Group of orthologs #132. Best score 602 bits
Score difference with first non-orthologous sequence - C.intestinalis:471 C.militaris:307

H2XQT6              	100.00%		G3JI14              	100.00%
Bootstrap support for H2XQT6 as seed ortholog is 100%.
Bootstrap support for G3JI14 as seed ortholog is 100%.

Group of orthologs #133. Best score 601 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:241

F6Y8H4              	100.00%		G3J955              	100.00%
Bootstrap support for F6Y8H4 as seed ortholog is 99%.
Bootstrap support for G3J955 as seed ortholog is 100%.

Group of orthologs #134. Best score 600 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:600

F6XCK4              	100.00%		G3JMA0              	100.00%
Bootstrap support for F6XCK4 as seed ortholog is 99%.
Bootstrap support for G3JMA0 as seed ortholog is 100%.

Group of orthologs #135. Best score 596 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:328

F7A1V5              	100.00%		G3JKE7              	100.00%
Bootstrap support for F7A1V5 as seed ortholog is 100%.
Bootstrap support for G3JKE7 as seed ortholog is 100%.

Group of orthologs #136. Best score 596 bits
Score difference with first non-orthologous sequence - C.intestinalis:348 C.militaris:393

H2XS20              	100.00%		G3JUT3              	100.00%
Bootstrap support for H2XS20 as seed ortholog is 100%.
Bootstrap support for G3JUT3 as seed ortholog is 100%.

Group of orthologs #137. Best score 595 bits
Score difference with first non-orthologous sequence - C.intestinalis:503 C.militaris:326

F6W1I6              	100.00%		G3JP87              	100.00%
                    	       		G3JGQ0              	30.18%
                    	       		G3JIK0              	15.93%
Bootstrap support for F6W1I6 as seed ortholog is 100%.
Bootstrap support for G3JP87 as seed ortholog is 100%.

Group of orthologs #138. Best score 595 bits
Score difference with first non-orthologous sequence - C.intestinalis:595 C.militaris:595

F6R356              	100.00%		G3JEL2              	100.00%
Bootstrap support for F6R356 as seed ortholog is 100%.
Bootstrap support for G3JEL2 as seed ortholog is 100%.

Group of orthologs #139. Best score 594 bits
Score difference with first non-orthologous sequence - C.intestinalis:317 C.militaris:400

F6TMJ9              	100.00%		G3J4Y8              	100.00%
Bootstrap support for F6TMJ9 as seed ortholog is 100%.
Bootstrap support for G3J4Y8 as seed ortholog is 100%.

Group of orthologs #140. Best score 594 bits
Score difference with first non-orthologous sequence - C.intestinalis:594 C.militaris:594

F6Z761              	100.00%		G3JAR3              	100.00%
Bootstrap support for F6Z761 as seed ortholog is 100%.
Bootstrap support for G3JAR3 as seed ortholog is 100%.

Group of orthologs #141. Best score 592 bits
Score difference with first non-orthologous sequence - C.intestinalis:592 C.militaris:592

F6PMK8              	100.00%		G3JN30              	100.00%
Bootstrap support for F6PMK8 as seed ortholog is 100%.
Bootstrap support for G3JN30 as seed ortholog is 100%.

Group of orthologs #142. Best score 590 bits
Score difference with first non-orthologous sequence - C.intestinalis:249 C.militaris:590

F6RHA1              	100.00%		G3JFU1              	100.00%
Bootstrap support for F6RHA1 as seed ortholog is 100%.
Bootstrap support for G3JFU1 as seed ortholog is 100%.

Group of orthologs #143. Best score 590 bits
Score difference with first non-orthologous sequence - C.intestinalis:590 C.militaris:590

F6ZZJ8              	100.00%		G3J562              	100.00%
Bootstrap support for F6ZZJ8 as seed ortholog is 100%.
Bootstrap support for G3J562 as seed ortholog is 100%.

Group of orthologs #144. Best score 590 bits
Score difference with first non-orthologous sequence - C.intestinalis:590 C.militaris:590

H2XQI5              	100.00%		G3JRH4              	100.00%
Bootstrap support for H2XQI5 as seed ortholog is 100%.
Bootstrap support for G3JRH4 as seed ortholog is 100%.

Group of orthologs #145. Best score 586 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:586

F6V7V9              	100.00%		G3JP31              	100.00%
Bootstrap support for F6V7V9 as seed ortholog is 100%.
Bootstrap support for G3JP31 as seed ortholog is 100%.

Group of orthologs #146. Best score 586 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:42

F6YUE7              	100.00%		G3JSP3              	100.00%
Bootstrap support for F6YUE7 as seed ortholog is 99%.
Bootstrap support for G3JSP3 as seed ortholog is 80%.

Group of orthologs #147. Best score 585 bits
Score difference with first non-orthologous sequence - C.intestinalis:585 C.militaris:585

F6Q9P9              	100.00%		G3JGP3              	100.00%
                    	       		G3JAU4              	25.03%
Bootstrap support for F6Q9P9 as seed ortholog is 100%.
Bootstrap support for G3JGP3 as seed ortholog is 100%.

Group of orthologs #148. Best score 584 bits
Score difference with first non-orthologous sequence - C.intestinalis:584 C.militaris:584

F6SXA9              	100.00%		G3JQ49              	100.00%
Bootstrap support for F6SXA9 as seed ortholog is 100%.
Bootstrap support for G3JQ49 as seed ortholog is 100%.

Group of orthologs #149. Best score 583 bits
Score difference with first non-orthologous sequence - C.intestinalis:414 C.militaris:583

F6VEU9              	100.00%		G3JA68              	100.00%
Bootstrap support for F6VEU9 as seed ortholog is 100%.
Bootstrap support for G3JA68 as seed ortholog is 100%.

Group of orthologs #150. Best score 581 bits
Score difference with first non-orthologous sequence - C.intestinalis:581 C.militaris:581

F6R2U8              	100.00%		G3J7J7              	100.00%
Bootstrap support for F6R2U8 as seed ortholog is 100%.
Bootstrap support for G3J7J7 as seed ortholog is 100%.

Group of orthologs #151. Best score 581 bits
Score difference with first non-orthologous sequence - C.intestinalis:422 C.militaris:581

F7BHP4              	100.00%		G3J8D1              	100.00%
Bootstrap support for F7BHP4 as seed ortholog is 100%.
Bootstrap support for G3J8D1 as seed ortholog is 100%.

Group of orthologs #152. Best score 581 bits
Score difference with first non-orthologous sequence - C.intestinalis:581 C.militaris:581

F6ZF70              	100.00%		G3JRS2              	100.00%
Bootstrap support for F6ZF70 as seed ortholog is 100%.
Bootstrap support for G3JRS2 as seed ortholog is 100%.

Group of orthologs #153. Best score 579 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:234

F6WI66              	100.00%		G3J935              	100.00%
Bootstrap support for F6WI66 as seed ortholog is 99%.
Bootstrap support for G3J935 as seed ortholog is 100%.

Group of orthologs #154. Best score 578 bits
Score difference with first non-orthologous sequence - C.intestinalis:578 C.militaris:578

F6QIX3              	100.00%		G3JNP4              	100.00%
Bootstrap support for F6QIX3 as seed ortholog is 100%.
Bootstrap support for G3JNP4 as seed ortholog is 100%.

Group of orthologs #155. Best score 577 bits
Score difference with first non-orthologous sequence - C.intestinalis:577 C.militaris:577

F6SHG8              	100.00%		G3J8Q7              	100.00%
Bootstrap support for F6SHG8 as seed ortholog is 100%.
Bootstrap support for G3J8Q7 as seed ortholog is 100%.

Group of orthologs #156. Best score 575 bits
Score difference with first non-orthologous sequence - C.intestinalis:575 C.militaris:575

F6U2M6              	100.00%		G3JQM1              	100.00%
Bootstrap support for F6U2M6 as seed ortholog is 100%.
Bootstrap support for G3JQM1 as seed ortholog is 100%.

Group of orthologs #157. Best score 573 bits
Score difference with first non-orthologous sequence - C.intestinalis:414 C.militaris:573

F6XKP0              	100.00%		G3J5U4              	100.00%
Bootstrap support for F6XKP0 as seed ortholog is 100%.
Bootstrap support for G3J5U4 as seed ortholog is 100%.

Group of orthologs #158. Best score 573 bits
Score difference with first non-orthologous sequence - C.intestinalis:573 C.militaris:573

F6XQ09              	100.00%		G3J8A4              	100.00%
Bootstrap support for F6XQ09 as seed ortholog is 100%.
Bootstrap support for G3J8A4 as seed ortholog is 100%.

Group of orthologs #159. Best score 572 bits
Score difference with first non-orthologous sequence - C.intestinalis:572 C.militaris:572

F6ZM86              	100.00%		G3JUU8              	100.00%
Bootstrap support for F6ZM86 as seed ortholog is 100%.
Bootstrap support for G3JUU8 as seed ortholog is 100%.

Group of orthologs #160. Best score 571 bits
Score difference with first non-orthologous sequence - C.intestinalis:571 C.militaris:571

F6XTJ3              	100.00%		G3JEF2              	100.00%
Bootstrap support for F6XTJ3 as seed ortholog is 100%.
Bootstrap support for G3JEF2 as seed ortholog is 100%.

Group of orthologs #161. Best score 570 bits
Score difference with first non-orthologous sequence - C.intestinalis:570 C.militaris:570

F6PNS6              	100.00%		G3J905              	100.00%
Bootstrap support for F6PNS6 as seed ortholog is 100%.
Bootstrap support for G3J905 as seed ortholog is 100%.

Group of orthologs #162. Best score 569 bits
Score difference with first non-orthologous sequence - C.intestinalis:569 C.militaris:399

F6Z194              	100.00%		G3J973              	100.00%
Bootstrap support for F6Z194 as seed ortholog is 100%.
Bootstrap support for G3J973 as seed ortholog is 100%.

Group of orthologs #163. Best score 569 bits
Score difference with first non-orthologous sequence - C.intestinalis:569 C.militaris:569

F6T957              	100.00%		G3JPQ1              	100.00%
Bootstrap support for F6T957 as seed ortholog is 100%.
Bootstrap support for G3JPQ1 as seed ortholog is 100%.

Group of orthologs #164. Best score 569 bits
Score difference with first non-orthologous sequence - C.intestinalis:416 C.militaris:353

H2XQX6              	100.00%		G3J4L2              	100.00%
Bootstrap support for H2XQX6 as seed ortholog is 100%.
Bootstrap support for G3J4L2 as seed ortholog is 100%.

Group of orthologs #165. Best score 565 bits
Score difference with first non-orthologous sequence - C.intestinalis:565 C.militaris:565

H2XQX5              	100.00%		G3J6C1              	100.00%
Bootstrap support for H2XQX5 as seed ortholog is 100%.
Bootstrap support for G3J6C1 as seed ortholog is 100%.

Group of orthologs #166. Best score 563 bits
Score difference with first non-orthologous sequence - C.intestinalis:563 C.militaris:563

F6XC92              	100.00%		G3J3J6              	100.00%
Bootstrap support for F6XC92 as seed ortholog is 100%.
Bootstrap support for G3J3J6 as seed ortholog is 100%.

Group of orthologs #167. Best score 562 bits
Score difference with first non-orthologous sequence - C.intestinalis:562 C.militaris:562

F6QB99              	100.00%		G3JGA3              	100.00%
Bootstrap support for F6QB99 as seed ortholog is 100%.
Bootstrap support for G3JGA3 as seed ortholog is 100%.

Group of orthologs #168. Best score 559 bits
Score difference with first non-orthologous sequence - C.intestinalis:559 C.militaris:559

F6R8V3              	100.00%		G3J7G7              	100.00%
Bootstrap support for F6R8V3 as seed ortholog is 100%.
Bootstrap support for G3J7G7 as seed ortholog is 100%.

Group of orthologs #169. Best score 559 bits
Score difference with first non-orthologous sequence - C.intestinalis:187 C.militaris:193

F6VAS2              	100.00%		G3JE75              	100.00%
Bootstrap support for F6VAS2 as seed ortholog is 100%.
Bootstrap support for G3JE75 as seed ortholog is 100%.

Group of orthologs #170. Best score 558 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 C.militaris:298

F6Y1K6              	100.00%		G3J7H1              	100.00%
F6Q5E4              	68.46%		
Bootstrap support for F6Y1K6 as seed ortholog is 100%.
Bootstrap support for G3J7H1 as seed ortholog is 100%.

Group of orthologs #171. Best score 558 bits
Score difference with first non-orthologous sequence - C.intestinalis:558 C.militaris:558

F6YXI8              	100.00%		G3J5U5              	100.00%
Bootstrap support for F6YXI8 as seed ortholog is 100%.
Bootstrap support for G3J5U5 as seed ortholog is 100%.

Group of orthologs #172. Best score 558 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:171

F6YDI9              	100.00%		G3J7K8              	100.00%
Bootstrap support for F6YDI9 as seed ortholog is 97%.
Bootstrap support for G3J7K8 as seed ortholog is 99%.

Group of orthologs #173. Best score 557 bits
Score difference with first non-orthologous sequence - C.intestinalis:343 C.militaris:557

F6PL95              	100.00%		G3J3K6              	100.00%
                    	       		G3J5W9              	20.19%
Bootstrap support for F6PL95 as seed ortholog is 100%.
Bootstrap support for G3J3K6 as seed ortholog is 100%.

Group of orthologs #174. Best score 557 bits
Score difference with first non-orthologous sequence - C.intestinalis:557 C.militaris:557

H2Y1C4              	100.00%		G3JCQ8              	100.00%
Bootstrap support for H2Y1C4 as seed ortholog is 100%.
Bootstrap support for G3JCQ8 as seed ortholog is 100%.

Group of orthologs #175. Best score 555 bits
Score difference with first non-orthologous sequence - C.intestinalis:377 C.militaris:199

F6YBA5              	100.00%		G3J8V6              	100.00%
Bootstrap support for F6YBA5 as seed ortholog is 100%.
Bootstrap support for G3J8V6 as seed ortholog is 99%.

Group of orthologs #176. Best score 555 bits
Score difference with first non-orthologous sequence - C.intestinalis:427 C.militaris:555

F6UWX3              	100.00%		G3JLN8              	100.00%
Bootstrap support for F6UWX3 as seed ortholog is 100%.
Bootstrap support for G3JLN8 as seed ortholog is 100%.

Group of orthologs #177. Best score 552 bits
Score difference with first non-orthologous sequence - C.intestinalis:467 C.militaris:552

F6XZ93              	100.00%		G3JN58              	100.00%
Bootstrap support for F6XZ93 as seed ortholog is 100%.
Bootstrap support for G3JN58 as seed ortholog is 100%.

Group of orthologs #178. Best score 552 bits
Score difference with first non-orthologous sequence - C.intestinalis:552 C.militaris:552

F6YKX8              	100.00%		G3JSB5              	100.00%
Bootstrap support for F6YKX8 as seed ortholog is 100%.
Bootstrap support for G3JSB5 as seed ortholog is 100%.

Group of orthologs #179. Best score 549 bits
Score difference with first non-orthologous sequence - C.intestinalis:383 C.militaris:364

F6RIY5              	100.00%		G3J8I1              	100.00%
Bootstrap support for F6RIY5 as seed ortholog is 100%.
Bootstrap support for G3J8I1 as seed ortholog is 100%.

Group of orthologs #180. Best score 548 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:93

H2XSE7              	100.00%		G3JHW4              	100.00%
F6W5P6              	11.62%		
F6W6R6              	9.65%		
Bootstrap support for H2XSE7 as seed ortholog is 99%.
Bootstrap support for G3JHW4 as seed ortholog is 99%.

Group of orthologs #181. Best score 548 bits
Score difference with first non-orthologous sequence - C.intestinalis:548 C.militaris:548

F6Z3I0              	100.00%		G3JP42              	100.00%
Bootstrap support for F6Z3I0 as seed ortholog is 100%.
Bootstrap support for G3JP42 as seed ortholog is 100%.

Group of orthologs #182. Best score 548 bits
Score difference with first non-orthologous sequence - C.intestinalis:548 C.militaris:548

H2XKW2              	100.00%		G3JHB6              	100.00%
Bootstrap support for H2XKW2 as seed ortholog is 100%.
Bootstrap support for G3JHB6 as seed ortholog is 100%.

Group of orthologs #183. Best score 544 bits
Score difference with first non-orthologous sequence - C.intestinalis:544 C.militaris:99

H2XU13              	100.00%		G3JSD1              	100.00%
Bootstrap support for H2XU13 as seed ortholog is 100%.
Bootstrap support for G3JSD1 as seed ortholog is 99%.

Group of orthologs #184. Best score 542 bits
Score difference with first non-orthologous sequence - C.intestinalis:467 C.militaris:542

F6VRH3              	100.00%		G3JTK3              	100.00%
Bootstrap support for F6VRH3 as seed ortholog is 100%.
Bootstrap support for G3JTK3 as seed ortholog is 100%.

Group of orthologs #185. Best score 541 bits
Score difference with first non-orthologous sequence - C.intestinalis:311 C.militaris:32

F6TV75              	100.00%		G3JD34              	100.00%
Bootstrap support for F6TV75 as seed ortholog is 100%.
Bootstrap support for G3JD34 as seed ortholog is 70%.
Alternative seed ortholog is G3J2R3 (32 bits away from this cluster)

Group of orthologs #186. Best score 540 bits
Score difference with first non-orthologous sequence - C.intestinalis:540 C.militaris:540

F6U5F1              	100.00%		G3J2L9              	100.00%
Bootstrap support for F6U5F1 as seed ortholog is 100%.
Bootstrap support for G3J2L9 as seed ortholog is 100%.

Group of orthologs #187. Best score 539 bits
Score difference with first non-orthologous sequence - C.intestinalis:386 C.militaris:539

F6WR85              	100.00%		G3J3U0              	100.00%
Bootstrap support for F6WR85 as seed ortholog is 100%.
Bootstrap support for G3J3U0 as seed ortholog is 100%.

Group of orthologs #188. Best score 539 bits
Score difference with first non-orthologous sequence - C.intestinalis:539 C.militaris:539

F7B580              	100.00%		G3JPQ0              	100.00%
Bootstrap support for F7B580 as seed ortholog is 100%.
Bootstrap support for G3JPQ0 as seed ortholog is 100%.

Group of orthologs #189. Best score 538 bits
Score difference with first non-orthologous sequence - C.intestinalis:538 C.militaris:283

F6SI15              	100.00%		G3JIN8              	100.00%
Bootstrap support for F6SI15 as seed ortholog is 100%.
Bootstrap support for G3JIN8 as seed ortholog is 99%.

Group of orthologs #190. Best score 538 bits
Score difference with first non-orthologous sequence - C.intestinalis:538 C.militaris:538

F6ZC49              	100.00%		G3J9K2              	100.00%
Bootstrap support for F6ZC49 as seed ortholog is 100%.
Bootstrap support for G3J9K2 as seed ortholog is 100%.

Group of orthologs #191. Best score 537 bits
Score difference with first non-orthologous sequence - C.intestinalis:537 C.militaris:370

H2Y3E5              	100.00%		G3J453              	100.00%
                    	       		G3J9C4              	13.55%
                    	       		G3JPF3              	11.31%
                    	       		G3J535              	8.22%
                    	       		G3J5K4              	7.59%
                    	       		G3JT71              	7.17%
                    	       		G3JSZ9              	6.31%
                    	       		G3JD22              	6.11%
Bootstrap support for H2Y3E5 as seed ortholog is 100%.
Bootstrap support for G3J453 as seed ortholog is 100%.

Group of orthologs #192. Best score 537 bits
Score difference with first non-orthologous sequence - C.intestinalis:537 C.militaris:537

F6QH36              	100.00%		G3JL24              	100.00%
Bootstrap support for F6QH36 as seed ortholog is 100%.
Bootstrap support for G3JL24 as seed ortholog is 100%.

Group of orthologs #193. Best score 536 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 C.militaris:275

F6TGH1              	100.00%		G3JDK6              	100.00%
Bootstrap support for F6TGH1 as seed ortholog is 99%.
Bootstrap support for G3JDK6 as seed ortholog is 100%.

Group of orthologs #194. Best score 536 bits
Score difference with first non-orthologous sequence - C.intestinalis:536 C.militaris:536

F6T9M1              	100.00%		G3JGU1              	100.00%
Bootstrap support for F6T9M1 as seed ortholog is 100%.
Bootstrap support for G3JGU1 as seed ortholog is 100%.

Group of orthologs #195. Best score 535 bits
Score difference with first non-orthologous sequence - C.intestinalis:535 C.militaris:535

F6ZDC7              	100.00%		G3J8S2              	100.00%
Bootstrap support for F6ZDC7 as seed ortholog is 100%.
Bootstrap support for G3J8S2 as seed ortholog is 100%.

Group of orthologs #196. Best score 535 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:286

F7AXJ1              	100.00%		G3JLY8              	100.00%
Bootstrap support for F7AXJ1 as seed ortholog is 99%.
Bootstrap support for G3JLY8 as seed ortholog is 100%.

Group of orthologs #197. Best score 532 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:158

F6YR02              	100.00%		G3JAP4              	100.00%
Bootstrap support for F6YR02 as seed ortholog is 99%.
Bootstrap support for G3JAP4 as seed ortholog is 99%.

Group of orthologs #198. Best score 531 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:82

F6YRI1              	100.00%		G3J2Z5              	100.00%
Bootstrap support for F6YRI1 as seed ortholog is 82%.
Bootstrap support for G3J2Z5 as seed ortholog is 92%.

Group of orthologs #199. Best score 530 bits
Score difference with first non-orthologous sequence - C.intestinalis:530 C.militaris:530

F6XJU3              	100.00%		G3JQ98              	100.00%
Bootstrap support for F6XJU3 as seed ortholog is 100%.
Bootstrap support for G3JQ98 as seed ortholog is 100%.

Group of orthologs #200. Best score 527 bits
Score difference with first non-orthologous sequence - C.intestinalis:527 C.militaris:527

F6YGJ7              	100.00%		G3JTK0              	100.00%
Bootstrap support for F6YGJ7 as seed ortholog is 100%.
Bootstrap support for G3JTK0 as seed ortholog is 100%.

Group of orthologs #201. Best score 524 bits
Score difference with first non-orthologous sequence - C.intestinalis:429 C.militaris:195

H2XY07              	100.00%		G3JBR7              	100.00%
                    	       		G3J9U4              	11.47%
Bootstrap support for H2XY07 as seed ortholog is 100%.
Bootstrap support for G3JBR7 as seed ortholog is 99%.

Group of orthologs #202. Best score 524 bits
Score difference with first non-orthologous sequence - C.intestinalis:524 C.militaris:524

F6VGC6              	100.00%		G3J4R7              	100.00%
Bootstrap support for F6VGC6 as seed ortholog is 100%.
Bootstrap support for G3J4R7 as seed ortholog is 100%.

Group of orthologs #203. Best score 524 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 C.militaris:429

H2XYB0              	100.00%		G3JC12              	100.00%
Bootstrap support for H2XYB0 as seed ortholog is 99%.
Bootstrap support for G3JC12 as seed ortholog is 100%.

Group of orthologs #204. Best score 522 bits
Score difference with first non-orthologous sequence - C.intestinalis:17 C.militaris:355

F7BGT4              	100.00%		G3J355              	100.00%
Bootstrap support for F7BGT4 as seed ortholog is 57%.
Alternative seed ortholog is F6PPP8 (17 bits away from this cluster)
Bootstrap support for G3J355 as seed ortholog is 100%.

Group of orthologs #205. Best score 521 bits
Score difference with first non-orthologous sequence - C.intestinalis:521 C.militaris:521

F6Q0U4              	100.00%		G3J464              	100.00%
Bootstrap support for F6Q0U4 as seed ortholog is 100%.
Bootstrap support for G3J464 as seed ortholog is 100%.

Group of orthologs #206. Best score 518 bits
Score difference with first non-orthologous sequence - C.intestinalis:518 C.militaris:518

F6VF77              	100.00%		G3J4R4              	100.00%
Bootstrap support for F6VF77 as seed ortholog is 100%.
Bootstrap support for G3J4R4 as seed ortholog is 100%.

Group of orthologs #207. Best score 518 bits
Score difference with first non-orthologous sequence - C.intestinalis:518 C.militaris:39

F6YXZ3              	100.00%		G3J446              	100.00%
Bootstrap support for F6YXZ3 as seed ortholog is 100%.
Bootstrap support for G3J446 as seed ortholog is 81%.

Group of orthologs #208. Best score 516 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 C.militaris:516

F6W785              	100.00%		G3JEL3              	100.00%
Bootstrap support for F6W785 as seed ortholog is 100%.
Bootstrap support for G3JEL3 as seed ortholog is 100%.

Group of orthologs #209. Best score 516 bits
Score difference with first non-orthologous sequence - C.intestinalis:516 C.militaris:516

F6YND1              	100.00%		G3JT79              	100.00%
Bootstrap support for F6YND1 as seed ortholog is 100%.
Bootstrap support for G3JT79 as seed ortholog is 100%.

Group of orthologs #210. Best score 514 bits
Score difference with first non-orthologous sequence - C.intestinalis:514 C.militaris:514

F6Z3U3              	100.00%		G3J627              	100.00%
Bootstrap support for F6Z3U3 as seed ortholog is 100%.
Bootstrap support for G3J627 as seed ortholog is 100%.

Group of orthologs #211. Best score 512 bits
Score difference with first non-orthologous sequence - C.intestinalis:512 C.militaris:512

F6XH38              	100.00%		G3J4L5              	100.00%
F6ZGX7              	18.46%		
F6ZGZ0              	16.56%		
Bootstrap support for F6XH38 as seed ortholog is 100%.
Bootstrap support for G3J4L5 as seed ortholog is 100%.

Group of orthologs #212. Best score 507 bits
Score difference with first non-orthologous sequence - C.intestinalis:507 C.militaris:507

F6VBU5              	100.00%		G3JIR9              	100.00%
Bootstrap support for F6VBU5 as seed ortholog is 100%.
Bootstrap support for G3JIR9 as seed ortholog is 100%.

Group of orthologs #213. Best score 507 bits
Score difference with first non-orthologous sequence - C.intestinalis:384 C.militaris:507

F7B2M5              	100.00%		G3JD46              	100.00%
Bootstrap support for F7B2M5 as seed ortholog is 100%.
Bootstrap support for G3JD46 as seed ortholog is 100%.

Group of orthologs #214. Best score 507 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.militaris:336

H2XJZ4              	100.00%		G3JQ83              	100.00%
Bootstrap support for H2XJZ4 as seed ortholog is 100%.
Bootstrap support for G3JQ83 as seed ortholog is 100%.

Group of orthologs #215. Best score 505 bits
Score difference with first non-orthologous sequence - C.intestinalis:505 C.militaris:505

F6W1Y5              	100.00%		G3JE20              	100.00%
Bootstrap support for F6W1Y5 as seed ortholog is 100%.
Bootstrap support for G3JE20 as seed ortholog is 100%.

Group of orthologs #216. Best score 503 bits
Score difference with first non-orthologous sequence - C.intestinalis:503 C.militaris:503

F6UHM2              	100.00%		G3JKP2              	100.00%
Bootstrap support for F6UHM2 as seed ortholog is 100%.
Bootstrap support for G3JKP2 as seed ortholog is 100%.

Group of orthologs #217. Best score 498 bits
Score difference with first non-orthologous sequence - C.intestinalis:498 C.militaris:498

H2XJF4              	100.00%		G3J4E2              	100.00%
                    	       		G3J605              	10.86%
Bootstrap support for H2XJF4 as seed ortholog is 100%.
Bootstrap support for G3J4E2 as seed ortholog is 100%.

Group of orthologs #218. Best score 497 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 C.militaris:497

F6PRK2              	100.00%		G3J8F1              	100.00%
Bootstrap support for F6PRK2 as seed ortholog is 99%.
Bootstrap support for G3J8F1 as seed ortholog is 100%.

Group of orthologs #219. Best score 496 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 C.militaris:162

F6SDI7              	100.00%		G3JAA9              	100.00%
Bootstrap support for F6SDI7 as seed ortholog is 88%.
Bootstrap support for G3JAA9 as seed ortholog is 100%.

Group of orthologs #220. Best score 493 bits
Score difference with first non-orthologous sequence - C.intestinalis:493 C.militaris:493

F6TZ29              	100.00%		G3J341              	100.00%
Bootstrap support for F6TZ29 as seed ortholog is 100%.
Bootstrap support for G3J341 as seed ortholog is 100%.

Group of orthologs #221. Best score 493 bits
Score difference with first non-orthologous sequence - C.intestinalis:355 C.militaris:362

F6YDF4              	100.00%		G3JLA7              	100.00%
Bootstrap support for F6YDF4 as seed ortholog is 100%.
Bootstrap support for G3JLA7 as seed ortholog is 100%.

Group of orthologs #222. Best score 493 bits
Score difference with first non-orthologous sequence - C.intestinalis:493 C.militaris:493

H2XXZ7              	100.00%		G3JFU3              	100.00%
Bootstrap support for H2XXZ7 as seed ortholog is 100%.
Bootstrap support for G3JFU3 as seed ortholog is 100%.

Group of orthologs #223. Best score 492 bits
Score difference with first non-orthologous sequence - C.intestinalis:492 C.militaris:492

F6UW46              	100.00%		G3JN84              	100.00%
Bootstrap support for F6UW46 as seed ortholog is 100%.
Bootstrap support for G3JN84 as seed ortholog is 100%.

Group of orthologs #224. Best score 490 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 C.militaris:351

F6SPK3              	100.00%		G3JPD5              	100.00%
Bootstrap support for F6SPK3 as seed ortholog is 99%.
Bootstrap support for G3JPD5 as seed ortholog is 100%.

Group of orthologs #225. Best score 490 bits
Score difference with first non-orthologous sequence - C.intestinalis:490 C.militaris:490

F6XL66              	100.00%		G3JH88              	100.00%
Bootstrap support for F6XL66 as seed ortholog is 100%.
Bootstrap support for G3JH88 as seed ortholog is 100%.

Group of orthologs #226. Best score 488 bits
Score difference with first non-orthologous sequence - C.intestinalis:389 C.militaris:488

F6Q8D1              	100.00%		G3JKI0              	100.00%
                    	       		G3JUU2              	52.85%
Bootstrap support for F6Q8D1 as seed ortholog is 100%.
Bootstrap support for G3JKI0 as seed ortholog is 100%.

Group of orthologs #227. Best score 488 bits
Score difference with first non-orthologous sequence - C.intestinalis:488 C.militaris:488

F6XIQ9              	100.00%		G3JPY6              	100.00%
Bootstrap support for F6XIQ9 as seed ortholog is 100%.
Bootstrap support for G3JPY6 as seed ortholog is 100%.

Group of orthologs #228. Best score 487 bits
Score difference with first non-orthologous sequence - C.intestinalis:487 C.militaris:487

F6W453              	100.00%		G3JE83              	100.00%
Bootstrap support for F6W453 as seed ortholog is 100%.
Bootstrap support for G3JE83 as seed ortholog is 100%.

Group of orthologs #229. Best score 487 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 C.militaris:207

F7AA42              	100.00%		G3JR18              	100.00%
Bootstrap support for F7AA42 as seed ortholog is 99%.
Bootstrap support for G3JR18 as seed ortholog is 100%.

Group of orthologs #230. Best score 487 bits
Score difference with first non-orthologous sequence - C.intestinalis:357 C.militaris:343

Q8T3S5              	100.00%		G3JDQ5              	100.00%
Bootstrap support for Q8T3S5 as seed ortholog is 100%.
Bootstrap support for G3JDQ5 as seed ortholog is 100%.

Group of orthologs #231. Best score 486 bits
Score difference with first non-orthologous sequence - C.intestinalis:486 C.militaris:486

F7AX62              	100.00%		G3JLI9              	100.00%
Bootstrap support for F7AX62 as seed ortholog is 100%.
Bootstrap support for G3JLI9 as seed ortholog is 100%.

Group of orthologs #232. Best score 485 bits
Score difference with first non-orthologous sequence - C.intestinalis:485 C.militaris:485

F6RK88              	100.00%		G3J5M1              	100.00%
Bootstrap support for F6RK88 as seed ortholog is 100%.
Bootstrap support for G3J5M1 as seed ortholog is 100%.

Group of orthologs #233. Best score 485 bits
Score difference with first non-orthologous sequence - C.intestinalis:152 C.militaris:106

F6UGA6              	100.00%		G3J6C3              	100.00%
Bootstrap support for F6UGA6 as seed ortholog is 99%.
Bootstrap support for G3J6C3 as seed ortholog is 95%.

Group of orthologs #234. Best score 484 bits
Score difference with first non-orthologous sequence - C.intestinalis:484 C.militaris:484

F6RMU1              	100.00%		G3JG78              	100.00%
Bootstrap support for F6RMU1 as seed ortholog is 100%.
Bootstrap support for G3JG78 as seed ortholog is 100%.

Group of orthologs #235. Best score 482 bits
Score difference with first non-orthologous sequence - C.intestinalis:482 C.militaris:482

F6TKV3              	100.00%		G3JPS7              	100.00%
Bootstrap support for F6TKV3 as seed ortholog is 100%.
Bootstrap support for G3JPS7 as seed ortholog is 100%.

Group of orthologs #236. Best score 480 bits
Score difference with first non-orthologous sequence - C.intestinalis:405 C.militaris:480

F6X7X8              	100.00%		G3JF41              	100.00%
Bootstrap support for F6X7X8 as seed ortholog is 100%.
Bootstrap support for G3JF41 as seed ortholog is 100%.

Group of orthologs #237. Best score 480 bits
Score difference with first non-orthologous sequence - C.intestinalis:480 C.militaris:480

F6ZY44              	100.00%		G3J993              	100.00%
Bootstrap support for F6ZY44 as seed ortholog is 100%.
Bootstrap support for G3J993 as seed ortholog is 100%.

Group of orthologs #238. Best score 479 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 C.militaris:382

F6QNL7              	100.00%		G3J6E7              	100.00%
Bootstrap support for F6QNL7 as seed ortholog is 100%.
Bootstrap support for G3J6E7 as seed ortholog is 100%.

Group of orthologs #239. Best score 479 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 C.militaris:401

F6SG33              	100.00%		G3J705              	100.00%
Bootstrap support for F6SG33 as seed ortholog is 99%.
Bootstrap support for G3J705 as seed ortholog is 100%.

Group of orthologs #240. Best score 479 bits
Score difference with first non-orthologous sequence - C.intestinalis:192 C.militaris:479

F7AVB6              	100.00%		G3JTR1              	100.00%
Bootstrap support for F7AVB6 as seed ortholog is 99%.
Bootstrap support for G3JTR1 as seed ortholog is 100%.

Group of orthologs #241. Best score 477 bits
Score difference with first non-orthologous sequence - C.intestinalis:477 C.militaris:477

F6W1L1              	100.00%		G3J7G2              	100.00%
Bootstrap support for F6W1L1 as seed ortholog is 100%.
Bootstrap support for G3J7G2 as seed ortholog is 100%.

Group of orthologs #242. Best score 477 bits
Score difference with first non-orthologous sequence - C.intestinalis:386 C.militaris:346

F6X0I3              	100.00%		G3JT06              	100.00%
Bootstrap support for F6X0I3 as seed ortholog is 100%.
Bootstrap support for G3JT06 as seed ortholog is 100%.

Group of orthologs #243. Best score 475 bits
Score difference with first non-orthologous sequence - C.intestinalis:374 C.militaris:396

F7A5V7              	100.00%		G3JN48              	100.00%
Bootstrap support for F7A5V7 as seed ortholog is 100%.
Bootstrap support for G3JN48 as seed ortholog is 100%.

Group of orthologs #244. Best score 473 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:473

F6RCR0              	100.00%		G3JHD1              	100.00%
F6QEE6              	34.12%		G3JGB2              	31.59%
                    	       		G3JCA3              	21.30%
Bootstrap support for F6RCR0 as seed ortholog is 76%.
Bootstrap support for G3JHD1 as seed ortholog is 100%.

Group of orthologs #245. Best score 473 bits
Score difference with first non-orthologous sequence - C.intestinalis:473 C.militaris:473

F6RNR5              	100.00%		G3JD41              	100.00%
Bootstrap support for F6RNR5 as seed ortholog is 100%.
Bootstrap support for G3JD41 as seed ortholog is 100%.

Group of orthologs #246. Best score 473 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 C.militaris:473

F6VJH0              	100.00%		G3JKU8              	100.00%
Bootstrap support for F6VJH0 as seed ortholog is 56%.
Alternative seed ortholog is F6R9X0 (1 bits away from this cluster)
Bootstrap support for G3JKU8 as seed ortholog is 100%.

Group of orthologs #247. Best score 472 bits
Score difference with first non-orthologous sequence - C.intestinalis:317 C.militaris:368

H2XVK2              	100.00%		G3JU98              	100.00%
H2XQD5              	55.68%		
Bootstrap support for H2XVK2 as seed ortholog is 100%.
Bootstrap support for G3JU98 as seed ortholog is 100%.

Group of orthologs #248. Best score 472 bits
Score difference with first non-orthologous sequence - C.intestinalis:400 C.militaris:472

F6W0L1              	100.00%		G3J5B2              	100.00%
Bootstrap support for F6W0L1 as seed ortholog is 100%.
Bootstrap support for G3J5B2 as seed ortholog is 100%.

Group of orthologs #249. Best score 472 bits
Score difference with first non-orthologous sequence - C.intestinalis:365 C.militaris:472

F6XHC0              	100.00%		G3J4R1              	100.00%
Bootstrap support for F6XHC0 as seed ortholog is 100%.
Bootstrap support for G3J4R1 as seed ortholog is 100%.

Group of orthologs #250. Best score 472 bits
Score difference with first non-orthologous sequence - C.intestinalis:192 C.militaris:224

F6U113              	100.00%		G3JCS5              	100.00%
Bootstrap support for F6U113 as seed ortholog is 99%.
Bootstrap support for G3JCS5 as seed ortholog is 100%.

Group of orthologs #251. Best score 472 bits
Score difference with first non-orthologous sequence - C.intestinalis:472 C.militaris:472

F6TAK8              	100.00%		G3JH47              	100.00%
Bootstrap support for F6TAK8 as seed ortholog is 100%.
Bootstrap support for G3JH47 as seed ortholog is 100%.

Group of orthologs #252. Best score 470 bits
Score difference with first non-orthologous sequence - C.intestinalis:470 C.militaris:470

F6RHH3              	100.00%		G3J3V4              	100.00%
Bootstrap support for F6RHH3 as seed ortholog is 100%.
Bootstrap support for G3J3V4 as seed ortholog is 100%.

Group of orthologs #253. Best score 470 bits
Score difference with first non-orthologous sequence - C.intestinalis:354 C.militaris:79

F6W0C3              	100.00%		G3JUN9              	100.00%
Bootstrap support for F6W0C3 as seed ortholog is 100%.
Bootstrap support for G3JUN9 as seed ortholog is 92%.

Group of orthologs #254. Best score 468 bits
Score difference with first non-orthologous sequence - C.intestinalis:468 C.militaris:468

F6WAZ5              	100.00%		G3JJV7              	100.00%
Bootstrap support for F6WAZ5 as seed ortholog is 100%.
Bootstrap support for G3JJV7 as seed ortholog is 100%.

Group of orthologs #255. Best score 467 bits
Score difference with first non-orthologous sequence - C.intestinalis:467 C.militaris:467

F6UF57              	100.00%		G3JDN8              	100.00%
Bootstrap support for F6UF57 as seed ortholog is 100%.
Bootstrap support for G3JDN8 as seed ortholog is 100%.

Group of orthologs #256. Best score 465 bits
Score difference with first non-orthologous sequence - C.intestinalis:465 C.militaris:465

F6PYH8              	100.00%		G3J9N3              	100.00%
                    	       		G3JPH6              	29.59%
Bootstrap support for F6PYH8 as seed ortholog is 100%.
Bootstrap support for G3J9N3 as seed ortholog is 100%.

Group of orthologs #257. Best score 465 bits
Score difference with first non-orthologous sequence - C.intestinalis:465 C.militaris:465

F7A9V2              	100.00%		G3J3M6              	100.00%
Bootstrap support for F7A9V2 as seed ortholog is 100%.
Bootstrap support for G3J3M6 as seed ortholog is 100%.

Group of orthologs #258. Best score 465 bits
Score difference with first non-orthologous sequence - C.intestinalis:378 C.militaris:465

F6XK10              	100.00%		G3JKM5              	100.00%
Bootstrap support for F6XK10 as seed ortholog is 100%.
Bootstrap support for G3JKM5 as seed ortholog is 100%.

Group of orthologs #259. Best score 465 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:189

F6TVZ8              	100.00%		G3JUV4              	100.00%
Bootstrap support for F6TVZ8 as seed ortholog is 98%.
Bootstrap support for G3JUV4 as seed ortholog is 100%.

Group of orthologs #260. Best score 464 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:67

F6WXA3              	100.00%		G3JJL2              	100.00%
F6WBI7              	55.42%		G3J7H6              	22.54%
Bootstrap support for F6WXA3 as seed ortholog is 99%.
Bootstrap support for G3JJL2 as seed ortholog is 96%.

Group of orthologs #261. Best score 464 bits
Score difference with first non-orthologous sequence - C.intestinalis:464 C.militaris:464

H2XZT6              	100.00%		G3JD93              	100.00%
Bootstrap support for H2XZT6 as seed ortholog is 100%.
Bootstrap support for G3JD93 as seed ortholog is 100%.

Group of orthologs #262. Best score 463 bits
Score difference with first non-orthologous sequence - C.intestinalis:463 C.militaris:463

F6WA81              	100.00%		G3J878              	100.00%
Bootstrap support for F6WA81 as seed ortholog is 100%.
Bootstrap support for G3J878 as seed ortholog is 100%.

Group of orthologs #263. Best score 463 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:320

F6VVR6              	100.00%		G3JIB7              	100.00%
Bootstrap support for F6VVR6 as seed ortholog is 100%.
Bootstrap support for G3JIB7 as seed ortholog is 100%.

Group of orthologs #264. Best score 461 bits
Score difference with first non-orthologous sequence - C.intestinalis:461 C.militaris:461

F6V5U6              	100.00%		G3JFT1              	100.00%
Bootstrap support for F6V5U6 as seed ortholog is 100%.
Bootstrap support for G3JFT1 as seed ortholog is 100%.

Group of orthologs #265. Best score 461 bits
Score difference with first non-orthologous sequence - C.intestinalis:461 C.militaris:461

F6UI47              	100.00%		G3JIK5              	100.00%
Bootstrap support for F6UI47 as seed ortholog is 100%.
Bootstrap support for G3JIK5 as seed ortholog is 100%.

Group of orthologs #266. Best score 460 bits
Score difference with first non-orthologous sequence - C.intestinalis:460 C.militaris:73

H2XYB3              	100.00%		G3J7E2              	100.00%
Bootstrap support for H2XYB3 as seed ortholog is 100%.
Bootstrap support for G3J7E2 as seed ortholog is 93%.

Group of orthologs #267. Best score 458 bits
Score difference with first non-orthologous sequence - C.intestinalis:458 C.militaris:373

F6X4B8              	100.00%		G3JKL5              	100.00%
Bootstrap support for F6X4B8 as seed ortholog is 100%.
Bootstrap support for G3JKL5 as seed ortholog is 100%.

Group of orthologs #268. Best score 457 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:259

F7A4H8              	100.00%		G3JSY5              	100.00%
Bootstrap support for F7A4H8 as seed ortholog is 99%.
Bootstrap support for G3JSY5 as seed ortholog is 100%.

Group of orthologs #269. Best score 455 bits
Score difference with first non-orthologous sequence - C.intestinalis:455 C.militaris:92

F6RK00              	100.00%		G3JDV9              	100.00%
Bootstrap support for F6RK00 as seed ortholog is 100%.
Bootstrap support for G3JDV9 as seed ortholog is 96%.

Group of orthologs #270. Best score 455 bits
Score difference with first non-orthologous sequence - C.intestinalis:301 C.militaris:272

F6Z7L9              	100.00%		G3JMI1              	100.00%
Bootstrap support for F6Z7L9 as seed ortholog is 100%.
Bootstrap support for G3JMI1 as seed ortholog is 100%.

Group of orthologs #271. Best score 454 bits
Score difference with first non-orthologous sequence - C.intestinalis:311 C.militaris:359

F6Q106              	100.00%		G3J4N6              	100.00%
Bootstrap support for F6Q106 as seed ortholog is 100%.
Bootstrap support for G3J4N6 as seed ortholog is 100%.

Group of orthologs #272. Best score 454 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:87

F7B991              	100.00%		G3JE33              	100.00%
Bootstrap support for F7B991 as seed ortholog is 100%.
Bootstrap support for G3JE33 as seed ortholog is 97%.

Group of orthologs #273. Best score 454 bits
Score difference with first non-orthologous sequence - C.intestinalis:454 C.militaris:454

F7BL51              	100.00%		G3JH75              	100.00%
Bootstrap support for F7BL51 as seed ortholog is 100%.
Bootstrap support for G3JH75 as seed ortholog is 100%.

Group of orthologs #274. Best score 453 bits
Score difference with first non-orthologous sequence - C.intestinalis:346 C.militaris:401

F6SK29              	100.00%		G3J5U9              	100.00%
Bootstrap support for F6SK29 as seed ortholog is 100%.
Bootstrap support for G3J5U9 as seed ortholog is 100%.

Group of orthologs #275. Best score 453 bits
Score difference with first non-orthologous sequence - C.intestinalis:453 C.militaris:303

F6YQ60              	100.00%		G3J3Q7              	100.00%
Bootstrap support for F6YQ60 as seed ortholog is 100%.
Bootstrap support for G3J3Q7 as seed ortholog is 100%.

Group of orthologs #276. Best score 453 bits
Score difference with first non-orthologous sequence - C.intestinalis:453 C.militaris:453

H2XNB1              	100.00%		G3JHF7              	100.00%
Bootstrap support for H2XNB1 as seed ortholog is 100%.
Bootstrap support for G3JHF7 as seed ortholog is 100%.

Group of orthologs #277. Best score 451 bits
Score difference with first non-orthologous sequence - C.intestinalis:451 C.militaris:451

H2XXL7              	100.00%		G3J4B0              	100.00%
Bootstrap support for H2XXL7 as seed ortholog is 100%.
Bootstrap support for G3J4B0 as seed ortholog is 100%.

Group of orthologs #278. Best score 447 bits
Score difference with first non-orthologous sequence - C.intestinalis:447 C.militaris:447

F6U8C7              	100.00%		G3JL40              	100.00%
Bootstrap support for F6U8C7 as seed ortholog is 100%.
Bootstrap support for G3JL40 as seed ortholog is 100%.

Group of orthologs #279. Best score 447 bits
Score difference with first non-orthologous sequence - C.intestinalis:447 C.militaris:51

F6S6E8              	100.00%		G3JRC2              	100.00%
Bootstrap support for F6S6E8 as seed ortholog is 100%.
Bootstrap support for G3JRC2 as seed ortholog is 90%.

Group of orthologs #280. Best score 446 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 C.militaris:375

F6YIL9              	100.00%		G3JEF1              	100.00%
Bootstrap support for F6YIL9 as seed ortholog is 100%.
Bootstrap support for G3JEF1 as seed ortholog is 100%.

Group of orthologs #281. Best score 445 bits
Score difference with first non-orthologous sequence - C.intestinalis:445 C.militaris:212

F6S399              	100.00%		G3JKS5              	100.00%
                    	       		G3JKQ9              	48.01%
Bootstrap support for F6S399 as seed ortholog is 100%.
Bootstrap support for G3JKS5 as seed ortholog is 99%.

Group of orthologs #282. Best score 445 bits
Score difference with first non-orthologous sequence - C.intestinalis:222 C.militaris:445

F6RNS7              	100.00%		G3J484              	100.00%
Bootstrap support for F6RNS7 as seed ortholog is 100%.
Bootstrap support for G3J484 as seed ortholog is 100%.

Group of orthologs #283. Best score 444 bits
Score difference with first non-orthologous sequence - C.intestinalis:444 C.militaris:444

F6XQD4              	100.00%		G3JCQ2              	100.00%
Bootstrap support for F6XQD4 as seed ortholog is 100%.
Bootstrap support for G3JCQ2 as seed ortholog is 100%.

Group of orthologs #284. Best score 442 bits
Score difference with first non-orthologous sequence - C.intestinalis:442 C.militaris:442

F6UF05              	100.00%		G3JJ96              	100.00%
Bootstrap support for F6UF05 as seed ortholog is 100%.
Bootstrap support for G3JJ96 as seed ortholog is 100%.

Group of orthologs #285. Best score 439 bits
Score difference with first non-orthologous sequence - C.intestinalis:439 C.militaris:439

F6V9G2              	100.00%		G3JE72              	100.00%
Bootstrap support for F6V9G2 as seed ortholog is 100%.
Bootstrap support for G3JE72 as seed ortholog is 100%.

Group of orthologs #286. Best score 439 bits
Score difference with first non-orthologous sequence - C.intestinalis:439 C.militaris:439

F6WYI9              	100.00%		G3JGY5              	100.00%
Bootstrap support for F6WYI9 as seed ortholog is 100%.
Bootstrap support for G3JGY5 as seed ortholog is 100%.

Group of orthologs #287. Best score 438 bits
Score difference with first non-orthologous sequence - C.intestinalis:438 C.militaris:438

F6ZVE7              	100.00%		G3J3C6              	100.00%
Bootstrap support for F6ZVE7 as seed ortholog is 100%.
Bootstrap support for G3J3C6 as seed ortholog is 100%.

Group of orthologs #288. Best score 438 bits
Score difference with first non-orthologous sequence - C.intestinalis:438 C.militaris:109

F6Y5C7              	100.00%		G3JER6              	100.00%
Bootstrap support for F6Y5C7 as seed ortholog is 100%.
Bootstrap support for G3JER6 as seed ortholog is 99%.

Group of orthologs #289. Best score 438 bits
Score difference with first non-orthologous sequence - C.intestinalis:438 C.militaris:438

H2XQE4              	100.00%		G3JCW8              	100.00%
Bootstrap support for H2XQE4 as seed ortholog is 100%.
Bootstrap support for G3JCW8 as seed ortholog is 100%.

Group of orthologs #290. Best score 436 bits
Score difference with first non-orthologous sequence - C.intestinalis:436 C.militaris:436

F6SFQ0              	100.00%		G3JPA4              	100.00%
Bootstrap support for F6SFQ0 as seed ortholog is 100%.
Bootstrap support for G3JPA4 as seed ortholog is 100%.

Group of orthologs #291. Best score 436 bits
Score difference with first non-orthologous sequence - C.intestinalis:436 C.militaris:436

F6U609              	100.00%		G3JRD1              	100.00%
Bootstrap support for F6U609 as seed ortholog is 100%.
Bootstrap support for G3JRD1 as seed ortholog is 100%.

Group of orthologs #292. Best score 436 bits
Score difference with first non-orthologous sequence - C.intestinalis:295 C.militaris:436

F6UIE4              	100.00%		G3JSU4              	100.00%
Bootstrap support for F6UIE4 as seed ortholog is 100%.
Bootstrap support for G3JSU4 as seed ortholog is 100%.

Group of orthologs #293. Best score 436 bits
Score difference with first non-orthologous sequence - C.intestinalis:436 C.militaris:436

F6XK22              	100.00%		G3JQQ3              	100.00%
Bootstrap support for F6XK22 as seed ortholog is 100%.
Bootstrap support for G3JQQ3 as seed ortholog is 100%.

Group of orthologs #294. Best score 435 bits
Score difference with first non-orthologous sequence - C.intestinalis:435 C.militaris:435

F6UQ90              	100.00%		G3J7Q7              	100.00%
Bootstrap support for F6UQ90 as seed ortholog is 100%.
Bootstrap support for G3J7Q7 as seed ortholog is 100%.

Group of orthologs #295. Best score 435 bits
Score difference with first non-orthologous sequence - C.intestinalis:435 C.militaris:435

F6ZN98              	100.00%		G3JLT7              	100.00%
Bootstrap support for F6ZN98 as seed ortholog is 100%.
Bootstrap support for G3JLT7 as seed ortholog is 100%.

Group of orthologs #296. Best score 433 bits
Score difference with first non-orthologous sequence - C.intestinalis:433 C.militaris:433

F6T5V0              	100.00%		G3J6J9              	100.00%
Bootstrap support for F6T5V0 as seed ortholog is 100%.
Bootstrap support for G3J6J9 as seed ortholog is 100%.

Group of orthologs #297. Best score 433 bits
Score difference with first non-orthologous sequence - C.intestinalis:433 C.militaris:433

F6ZP25              	100.00%		G3JLP5              	100.00%
Bootstrap support for F6ZP25 as seed ortholog is 100%.
Bootstrap support for G3JLP5 as seed ortholog is 100%.

Group of orthologs #298. Best score 433 bits
Score difference with first non-orthologous sequence - C.intestinalis:306 C.militaris:365

F7AMH0              	100.00%		G3JL53              	100.00%
Bootstrap support for F7AMH0 as seed ortholog is 100%.
Bootstrap support for G3JL53 as seed ortholog is 100%.

Group of orthologs #299. Best score 433 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 C.militaris:300

F7B7G6              	100.00%		G3JPH7              	100.00%
Bootstrap support for F7B7G6 as seed ortholog is 100%.
Bootstrap support for G3JPH7 as seed ortholog is 100%.

Group of orthologs #300. Best score 433 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 C.militaris:269

Q9NL43              	100.00%		G3JGQ8              	100.00%
Bootstrap support for Q9NL43 as seed ortholog is 100%.
Bootstrap support for G3JGQ8 as seed ortholog is 100%.

Group of orthologs #301. Best score 432 bits
Score difference with first non-orthologous sequence - C.intestinalis:432 C.militaris:432

F6TTZ5              	100.00%		G3JG05              	100.00%
Bootstrap support for F6TTZ5 as seed ortholog is 100%.
Bootstrap support for G3JG05 as seed ortholog is 100%.

Group of orthologs #302. Best score 431 bits
Score difference with first non-orthologous sequence - C.intestinalis:431 C.militaris:431

F6YX67              	100.00%		G3J8P3              	100.00%
Bootstrap support for F6YX67 as seed ortholog is 100%.
Bootstrap support for G3J8P3 as seed ortholog is 100%.

Group of orthologs #303. Best score 431 bits
Score difference with first non-orthologous sequence - C.intestinalis:431 C.militaris:431

H2XWZ3              	100.00%		G3JD78              	100.00%
Bootstrap support for H2XWZ3 as seed ortholog is 100%.
Bootstrap support for G3JD78 as seed ortholog is 100%.

Group of orthologs #304. Best score 428 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.militaris:428

F7A606              	100.00%		G3J789              	100.00%
Bootstrap support for F7A606 as seed ortholog is 100%.
Bootstrap support for G3J789 as seed ortholog is 100%.

Group of orthologs #305. Best score 427 bits
Score difference with first non-orthologous sequence - C.intestinalis:283 C.militaris:221

F6XBC5              	100.00%		G3JPL1              	100.00%
Bootstrap support for F6XBC5 as seed ortholog is 100%.
Bootstrap support for G3JPL1 as seed ortholog is 100%.

Group of orthologs #306. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:426 C.militaris:426

F6PWP3              	100.00%		G3J3G8              	100.00%
Bootstrap support for F6PWP3 as seed ortholog is 100%.
Bootstrap support for G3J3G8 as seed ortholog is 100%.

Group of orthologs #307. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:426 C.militaris:213

F6R4B5              	100.00%		G3J6P2              	100.00%
Bootstrap support for F6R4B5 as seed ortholog is 100%.
Bootstrap support for G3J6P2 as seed ortholog is 99%.

Group of orthologs #308. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:349 C.militaris:426

F6QI83              	100.00%		G3JGR9              	100.00%
Bootstrap support for F6QI83 as seed ortholog is 100%.
Bootstrap support for G3JGR9 as seed ortholog is 100%.

Group of orthologs #309. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:426 C.militaris:426

F7B5P4              	100.00%		G3J5S8              	100.00%
Bootstrap support for F7B5P4 as seed ortholog is 100%.
Bootstrap support for G3J5S8 as seed ortholog is 100%.

Group of orthologs #310. Best score 426 bits
Score difference with first non-orthologous sequence - C.intestinalis:426 C.militaris:426

H2XZM3              	100.00%		G3JF46              	100.00%
Bootstrap support for H2XZM3 as seed ortholog is 100%.
Bootstrap support for G3JF46 as seed ortholog is 100%.

Group of orthologs #311. Best score 425 bits
Score difference with first non-orthologous sequence - C.intestinalis:16 C.militaris:425

F6XQ16              	100.00%		G3J6B5              	100.00%
Bootstrap support for F6XQ16 as seed ortholog is 77%.
Bootstrap support for G3J6B5 as seed ortholog is 100%.

Group of orthologs #312. Best score 423 bits
Score difference with first non-orthologous sequence - C.intestinalis:423 C.militaris:423

F6TSV2              	100.00%		G3J3Q8              	100.00%
Bootstrap support for F6TSV2 as seed ortholog is 100%.
Bootstrap support for G3J3Q8 as seed ortholog is 100%.

Group of orthologs #313. Best score 423 bits
Score difference with first non-orthologous sequence - C.intestinalis:423 C.militaris:423

F6PXA1              	100.00%		G3JDA3              	100.00%
Bootstrap support for F6PXA1 as seed ortholog is 100%.
Bootstrap support for G3JDA3 as seed ortholog is 100%.

Group of orthologs #314. Best score 423 bits
Score difference with first non-orthologous sequence - C.intestinalis:328 C.militaris:345

F6UBT3              	100.00%		G3JJN0              	100.00%
Bootstrap support for F6UBT3 as seed ortholog is 100%.
Bootstrap support for G3JJN0 as seed ortholog is 100%.

Group of orthologs #315. Best score 423 bits
Score difference with first non-orthologous sequence - C.intestinalis:423 C.militaris:423

F7BBD1              	100.00%		G3JFC7              	100.00%
Bootstrap support for F7BBD1 as seed ortholog is 100%.
Bootstrap support for G3JFC7 as seed ortholog is 100%.

Group of orthologs #316. Best score 422 bits
Score difference with first non-orthologous sequence - C.intestinalis:422 C.militaris:422

F6Z3T2              	100.00%		G3JC69              	100.00%
Bootstrap support for F6Z3T2 as seed ortholog is 100%.
Bootstrap support for G3JC69 as seed ortholog is 100%.

Group of orthologs #317. Best score 421 bits
Score difference with first non-orthologous sequence - C.intestinalis:421 C.militaris:421

F6YY15              	100.00%		G3JMT9              	100.00%
Bootstrap support for F6YY15 as seed ortholog is 100%.
Bootstrap support for G3JMT9 as seed ortholog is 100%.

Group of orthologs #318. Best score 420 bits
Score difference with first non-orthologous sequence - C.intestinalis:362 C.militaris:301

F6SUM0              	100.00%		G3JL35              	100.00%
F7AAH8              	39.17%		G3JMJ6              	36.44%
                    	       		G3JAR6              	24.47%
Bootstrap support for F6SUM0 as seed ortholog is 100%.
Bootstrap support for G3JL35 as seed ortholog is 100%.

Group of orthologs #319. Best score 420 bits
Score difference with first non-orthologous sequence - C.intestinalis:420 C.militaris:420

F6RCY1              	100.00%		G3J934              	100.00%
Bootstrap support for F6RCY1 as seed ortholog is 100%.
Bootstrap support for G3J934 as seed ortholog is 100%.

Group of orthologs #320. Best score 418 bits
Score difference with first non-orthologous sequence - C.intestinalis:418 C.militaris:418

F6UDJ0              	100.00%		G3JG20              	100.00%
Bootstrap support for F6UDJ0 as seed ortholog is 100%.
Bootstrap support for G3JG20 as seed ortholog is 100%.

Group of orthologs #321. Best score 418 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:27

F6S4Q0              	100.00%		G3JQW3              	100.00%
Bootstrap support for F6S4Q0 as seed ortholog is 100%.
Bootstrap support for G3JQW3 as seed ortholog is 75%.

Group of orthologs #322. Best score 416 bits
Score difference with first non-orthologous sequence - C.intestinalis:416 C.militaris:416

F6TDD6              	100.00%		G3JA52              	100.00%
Bootstrap support for F6TDD6 as seed ortholog is 100%.
Bootstrap support for G3JA52 as seed ortholog is 100%.

Group of orthologs #323. Best score 415 bits
Score difference with first non-orthologous sequence - C.intestinalis:364 C.militaris:360

F6Z8I3              	100.00%		G3J983              	100.00%
Bootstrap support for F6Z8I3 as seed ortholog is 100%.
Bootstrap support for G3J983 as seed ortholog is 100%.

Group of orthologs #324. Best score 415 bits
Score difference with first non-orthologous sequence - C.intestinalis:415 C.militaris:415

F7AQA9              	100.00%		G3JFG0              	100.00%
Bootstrap support for F7AQA9 as seed ortholog is 100%.
Bootstrap support for G3JFG0 as seed ortholog is 100%.

Group of orthologs #325. Best score 414 bits
Score difference with first non-orthologous sequence - C.intestinalis:414 C.militaris:414

F6TEN3              	100.00%		G3JHA8              	100.00%
Bootstrap support for F6TEN3 as seed ortholog is 100%.
Bootstrap support for G3JHA8 as seed ortholog is 100%.

Group of orthologs #326. Best score 412 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:68

F6R5L0              	100.00%		G3JGM3              	100.00%
Bootstrap support for F6R5L0 as seed ortholog is 99%.
Bootstrap support for G3JGM3 as seed ortholog is 99%.

Group of orthologs #327. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:411 C.militaris:411

F6USX3              	100.00%		G3JGP4              	100.00%
Bootstrap support for F6USX3 as seed ortholog is 100%.
Bootstrap support for G3JGP4 as seed ortholog is 100%.

Group of orthologs #328. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:352 C.militaris:411

H2XLP3              	100.00%		G3J7K9              	100.00%
Bootstrap support for H2XLP3 as seed ortholog is 100%.
Bootstrap support for G3J7K9 as seed ortholog is 100%.

Group of orthologs #329. Best score 411 bits
Score difference with first non-orthologous sequence - C.intestinalis:359 C.militaris:151

H2XVN3              	100.00%		G3J5A8              	100.00%
Bootstrap support for H2XVN3 as seed ortholog is 100%.
Bootstrap support for G3J5A8 as seed ortholog is 100%.

Group of orthologs #330. Best score 410 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:163

F6UK45              	100.00%		G3JJB3              	100.00%
Bootstrap support for F6UK45 as seed ortholog is 99%.
Bootstrap support for G3JJB3 as seed ortholog is 99%.

Group of orthologs #331. Best score 409 bits
Score difference with first non-orthologous sequence - C.intestinalis:409 C.militaris:409

F6YQS6              	100.00%		G3JN85              	100.00%
Bootstrap support for F6YQS6 as seed ortholog is 100%.
Bootstrap support for G3JN85 as seed ortholog is 100%.

Group of orthologs #332. Best score 408 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 C.militaris:324

F6W9I8              	100.00%		G3JQM4              	100.00%
Bootstrap support for F6W9I8 as seed ortholog is 100%.
Bootstrap support for G3JQM4 as seed ortholog is 100%.

Group of orthologs #333. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.militaris:26

H2XJH1              	100.00%		G3JSE8              	100.00%
F6ZFK4              	23.84%		
Bootstrap support for H2XJH1 as seed ortholog is 99%.
Bootstrap support for G3JSE8 as seed ortholog is 65%.
Alternative seed ortholog is G3JLY9 (26 bits away from this cluster)

Group of orthologs #334. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 C.militaris:191

F6YGC1              	100.00%		G3JBS7              	100.00%
Bootstrap support for F6YGC1 as seed ortholog is 99%.
Bootstrap support for G3JBS7 as seed ortholog is 100%.

Group of orthologs #335. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:406 C.militaris:406

F7B4V9              	100.00%		G3J6H2              	100.00%
Bootstrap support for F7B4V9 as seed ortholog is 100%.
Bootstrap support for G3J6H2 as seed ortholog is 100%.

Group of orthologs #336. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 C.militaris:260

H2XK60              	100.00%		G3JAD2              	100.00%
Bootstrap support for H2XK60 as seed ortholog is 100%.
Bootstrap support for G3JAD2 as seed ortholog is 100%.

Group of orthologs #337. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:17

F6ZCE0              	100.00%		G3JHU5              	100.00%
Bootstrap support for F6ZCE0 as seed ortholog is 99%.
Bootstrap support for G3JHU5 as seed ortholog is 63%.
Alternative seed ortholog is G3JAU5 (17 bits away from this cluster)

Group of orthologs #338. Best score 406 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 C.militaris:406

F6X3Q7              	100.00%		G3JRS0              	100.00%
Bootstrap support for F6X3Q7 as seed ortholog is 100%.
Bootstrap support for G3JRS0 as seed ortholog is 100%.

Group of orthologs #339. Best score 405 bits
Score difference with first non-orthologous sequence - C.intestinalis:293 C.militaris:405

F6USH9              	100.00%		G3JJM0              	100.00%
Bootstrap support for F6USH9 as seed ortholog is 100%.
Bootstrap support for G3JJM0 as seed ortholog is 100%.

Group of orthologs #340. Best score 405 bits
Score difference with first non-orthologous sequence - C.intestinalis:405 C.militaris:154

F6YWY7              	100.00%		G3JKZ6              	100.00%
Bootstrap support for F6YWY7 as seed ortholog is 100%.
Bootstrap support for G3JKZ6 as seed ortholog is 99%.

Group of orthologs #341. Best score 405 bits
Score difference with first non-orthologous sequence - C.intestinalis:405 C.militaris:405

F6XRI7              	100.00%		G3JQF4              	100.00%
Bootstrap support for F6XRI7 as seed ortholog is 100%.
Bootstrap support for G3JQF4 as seed ortholog is 100%.

Group of orthologs #342. Best score 404 bits
Score difference with first non-orthologous sequence - C.intestinalis:404 C.militaris:404

F6QI37              	100.00%		G3JQJ1              	100.00%
Bootstrap support for F6QI37 as seed ortholog is 100%.
Bootstrap support for G3JQJ1 as seed ortholog is 100%.

Group of orthologs #343. Best score 404 bits
Score difference with first non-orthologous sequence - C.intestinalis:404 C.militaris:404

F6X4W9              	100.00%		G3JJI7              	100.00%
Bootstrap support for F6X4W9 as seed ortholog is 100%.
Bootstrap support for G3JJI7 as seed ortholog is 100%.

Group of orthologs #344. Best score 403 bits
Score difference with first non-orthologous sequence - C.intestinalis:403 C.militaris:403

F6TBI8              	100.00%		G3JQL4              	100.00%
Bootstrap support for F6TBI8 as seed ortholog is 100%.
Bootstrap support for G3JQL4 as seed ortholog is 100%.

Group of orthologs #345. Best score 402 bits
Score difference with first non-orthologous sequence - C.intestinalis:225 C.militaris:402

F7BBJ9              	100.00%		G3JRK9              	100.00%
Bootstrap support for F7BBJ9 as seed ortholog is 100%.
Bootstrap support for G3JRK9 as seed ortholog is 100%.

Group of orthologs #346. Best score 401 bits
Score difference with first non-orthologous sequence - C.intestinalis:401 C.militaris:401

F7BQ94              	100.00%		G3JF21              	100.00%
Bootstrap support for F7BQ94 as seed ortholog is 100%.
Bootstrap support for G3JF21 as seed ortholog is 100%.

Group of orthologs #347. Best score 400 bits
Score difference with first non-orthologous sequence - C.intestinalis:400 C.militaris:400

F6PG92              	100.00%		G3J9K3              	100.00%
Bootstrap support for F6PG92 as seed ortholog is 100%.
Bootstrap support for G3J9K3 as seed ortholog is 100%.

Group of orthologs #348. Best score 399 bits
Score difference with first non-orthologous sequence - C.intestinalis:399 C.militaris:268

F6U062              	100.00%		G3JF32              	100.00%
F6USW1              	7.07%		G3JS47              	36.85%
                    	       		G3JBN0              	9.83%
Bootstrap support for F6U062 as seed ortholog is 100%.
Bootstrap support for G3JF32 as seed ortholog is 100%.

Group of orthologs #349. Best score 399 bits
Score difference with first non-orthologous sequence - C.intestinalis:399 C.militaris:399

F6VZF6              	100.00%		G3JI75              	100.00%
Bootstrap support for F6VZF6 as seed ortholog is 100%.
Bootstrap support for G3JI75 as seed ortholog is 100%.

Group of orthologs #350. Best score 399 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 C.militaris:80

Q4H3L5              	100.00%		G3J3V3              	100.00%
Bootstrap support for Q4H3L5 as seed ortholog is 99%.
Bootstrap support for G3J3V3 as seed ortholog is 98%.

Group of orthologs #351. Best score 398 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 C.militaris:273

F6ZXA7              	100.00%		G3JI23              	100.00%
Bootstrap support for F6ZXA7 as seed ortholog is 64%.
Alternative seed ortholog is F6YWP5 (15 bits away from this cluster)
Bootstrap support for G3JI23 as seed ortholog is 100%.

Group of orthologs #352. Best score 398 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:290

H2XYE1              	100.00%		G3J5D6              	100.00%
Bootstrap support for H2XYE1 as seed ortholog is 100%.
Bootstrap support for G3J5D6 as seed ortholog is 100%.

Group of orthologs #353. Best score 396 bits
Score difference with first non-orthologous sequence - C.intestinalis:318 C.militaris:396

F6TX56              	100.00%		G3J4Q2              	100.00%
Bootstrap support for F6TX56 as seed ortholog is 100%.
Bootstrap support for G3J4Q2 as seed ortholog is 100%.

Group of orthologs #354. Best score 396 bits
Score difference with first non-orthologous sequence - C.intestinalis:396 C.militaris:315

F6VFC5              	100.00%		G3J8X5              	100.00%
Bootstrap support for F6VFC5 as seed ortholog is 100%.
Bootstrap support for G3J8X5 as seed ortholog is 100%.

Group of orthologs #355. Best score 396 bits
Score difference with first non-orthologous sequence - C.intestinalis:396 C.militaris:396

F6SPZ6              	100.00%		G3JQW2              	100.00%
Bootstrap support for F6SPZ6 as seed ortholog is 100%.
Bootstrap support for G3JQW2 as seed ortholog is 100%.

Group of orthologs #356. Best score 395 bits
Score difference with first non-orthologous sequence - C.intestinalis:395 C.militaris:395

F7BCV4              	100.00%		G3J3N1              	100.00%
Bootstrap support for F7BCV4 as seed ortholog is 100%.
Bootstrap support for G3J3N1 as seed ortholog is 100%.

Group of orthologs #357. Best score 395 bits
Score difference with first non-orthologous sequence - C.intestinalis:395 C.militaris:395

F6W8G0              	100.00%		G3JIA3              	100.00%
Bootstrap support for F6W8G0 as seed ortholog is 100%.
Bootstrap support for G3JIA3 as seed ortholog is 100%.

Group of orthologs #358. Best score 394 bits
Score difference with first non-orthologous sequence - C.intestinalis:394 C.militaris:394

F6WUM1              	100.00%		G3J3T8              	100.00%
Bootstrap support for F6WUM1 as seed ortholog is 100%.
Bootstrap support for G3J3T8 as seed ortholog is 100%.

Group of orthologs #359. Best score 393 bits
Score difference with first non-orthologous sequence - C.intestinalis:393 C.militaris:83

F6YEG0              	100.00%		G3J6U4              	100.00%
                    	       		G3JQ79              	39.37%
Bootstrap support for F6YEG0 as seed ortholog is 100%.
Bootstrap support for G3J6U4 as seed ortholog is 93%.

Group of orthologs #360. Best score 392 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:392

F6SBC7              	100.00%		G3JQ52              	100.00%
Bootstrap support for F6SBC7 as seed ortholog is 99%.
Bootstrap support for G3JQ52 as seed ortholog is 100%.

Group of orthologs #361. Best score 391 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 C.militaris:391

F6QWQ4              	100.00%		G3JFZ7              	100.00%
Bootstrap support for F6QWQ4 as seed ortholog is 82%.
Bootstrap support for G3JFZ7 as seed ortholog is 100%.

Group of orthologs #362. Best score 391 bits
Score difference with first non-orthologous sequence - C.intestinalis:391 C.militaris:391

F6YIU2              	100.00%		G3JFT8              	100.00%
Bootstrap support for F6YIU2 as seed ortholog is 100%.
Bootstrap support for G3JFT8 as seed ortholog is 100%.

Group of orthologs #363. Best score 390 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.militaris:120

F6Q0M2              	100.00%		G3JLM9              	100.00%
Bootstrap support for F6Q0M2 as seed ortholog is 92%.
Bootstrap support for G3JLM9 as seed ortholog is 99%.

Group of orthologs #364. Best score 390 bits
Score difference with first non-orthologous sequence - C.intestinalis:390 C.militaris:390

F7BHB2              	100.00%		G3JJN2              	100.00%
Bootstrap support for F7BHB2 as seed ortholog is 100%.
Bootstrap support for G3JJN2 as seed ortholog is 100%.

Group of orthologs #365. Best score 389 bits
Score difference with first non-orthologous sequence - C.intestinalis:389 C.militaris:389

F6XIP9              	100.00%		G3J391              	100.00%
Bootstrap support for F6XIP9 as seed ortholog is 100%.
Bootstrap support for G3J391 as seed ortholog is 100%.

Group of orthologs #366. Best score 389 bits
Score difference with first non-orthologous sequence - C.intestinalis:389 C.militaris:389

F6VCH9              	100.00%		G3JAL8              	100.00%
Bootstrap support for F6VCH9 as seed ortholog is 100%.
Bootstrap support for G3JAL8 as seed ortholog is 100%.

Group of orthologs #367. Best score 389 bits
Score difference with first non-orthologous sequence - C.intestinalis:389 C.militaris:389

F6YHS8              	100.00%		G3JF67              	100.00%
Bootstrap support for F6YHS8 as seed ortholog is 100%.
Bootstrap support for G3JF67 as seed ortholog is 100%.

Group of orthologs #368. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:388

F6R472              	100.00%		G3J8G1              	100.00%
Bootstrap support for F6R472 as seed ortholog is 99%.
Bootstrap support for G3J8G1 as seed ortholog is 100%.

Group of orthologs #369. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:293 C.militaris:388

F6QIK7              	100.00%		G3JN91              	100.00%
Bootstrap support for F6QIK7 as seed ortholog is 100%.
Bootstrap support for G3JN91 as seed ortholog is 100%.

Group of orthologs #370. Best score 388 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:111

H2Y169              	100.00%		G3J895              	100.00%
Bootstrap support for H2Y169 as seed ortholog is 98%.
Bootstrap support for G3J895 as seed ortholog is 99%.

Group of orthologs #371. Best score 387 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:387

F6SLC8              	100.00%		G3J5S1              	100.00%
Bootstrap support for F6SLC8 as seed ortholog is 100%.
Bootstrap support for G3J5S1 as seed ortholog is 100%.

Group of orthologs #372. Best score 387 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:387

F6XHQ2              	100.00%		G3J4P7              	100.00%
Bootstrap support for F6XHQ2 as seed ortholog is 100%.
Bootstrap support for G3J4P7 as seed ortholog is 100%.

Group of orthologs #373. Best score 387 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:334

F6ZW39              	100.00%		G3J3D6              	100.00%
Bootstrap support for F6ZW39 as seed ortholog is 100%.
Bootstrap support for G3J3D6 as seed ortholog is 100%.

Group of orthologs #374. Best score 387 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:387

F6U1K7              	100.00%		G3JI01              	100.00%
Bootstrap support for F6U1K7 as seed ortholog is 100%.
Bootstrap support for G3JI01 as seed ortholog is 100%.

Group of orthologs #375. Best score 387 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:387

F6TQ69              	100.00%		G3JMP6              	100.00%
Bootstrap support for F6TQ69 as seed ortholog is 100%.
Bootstrap support for G3JMP6 as seed ortholog is 100%.

Group of orthologs #376. Best score 387 bits
Score difference with first non-orthologous sequence - C.intestinalis:387 C.militaris:387

F6VCT2              	100.00%		G3JU15              	100.00%
Bootstrap support for F6VCT2 as seed ortholog is 100%.
Bootstrap support for G3JU15 as seed ortholog is 100%.

Group of orthologs #377. Best score 386 bits
Score difference with first non-orthologous sequence - C.intestinalis:386 C.militaris:386

F7AVN1              	100.00%		G3JF75              	100.00%
Bootstrap support for F7AVN1 as seed ortholog is 100%.
Bootstrap support for G3JF75 as seed ortholog is 100%.

Group of orthologs #378. Best score 385 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:385

F6WWW4              	100.00%		G3J9E8              	100.00%
Bootstrap support for F6WWW4 as seed ortholog is 100%.
Bootstrap support for G3J9E8 as seed ortholog is 100%.

Group of orthologs #379. Best score 384 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:70

Q8WSS1              	100.00%		G3JM92              	100.00%
H2Y1Q1              	21.88%		
F6PR32              	20.67%		
Bootstrap support for Q8WSS1 as seed ortholog is 93%.
Bootstrap support for G3JM92 as seed ortholog is 98%.

Group of orthologs #380. Best score 384 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 C.militaris:146

F6PLA8              	100.00%		G3J6Y8              	100.00%
Bootstrap support for F6PLA8 as seed ortholog is 88%.
Bootstrap support for G3J6Y8 as seed ortholog is 99%.

Group of orthologs #381. Best score 384 bits
Score difference with first non-orthologous sequence - C.intestinalis:384 C.militaris:384

F7A8S2              	100.00%		G3JFG3              	100.00%
Bootstrap support for F7A8S2 as seed ortholog is 100%.
Bootstrap support for G3JFG3 as seed ortholog is 100%.

Group of orthologs #382. Best score 383 bits
Score difference with first non-orthologous sequence - C.intestinalis:383 C.militaris:383

F6TD07              	100.00%		G3JEJ4              	100.00%
Bootstrap support for F6TD07 as seed ortholog is 100%.
Bootstrap support for G3JEJ4 as seed ortholog is 100%.

Group of orthologs #383. Best score 383 bits
Score difference with first non-orthologous sequence - C.intestinalis:383 C.militaris:383

F6ZVC8              	100.00%		G3JR03              	100.00%
Bootstrap support for F6ZVC8 as seed ortholog is 100%.
Bootstrap support for G3JR03 as seed ortholog is 100%.

Group of orthologs #384. Best score 382 bits
Score difference with first non-orthologous sequence - C.intestinalis:382 C.militaris:382

H2XUG5              	100.00%		G3JD38              	100.00%
H2XXW3              	8.86%		
Bootstrap support for H2XUG5 as seed ortholog is 100%.
Bootstrap support for G3JD38 as seed ortholog is 100%.

Group of orthologs #385. Best score 382 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:306

F6XSL1              	100.00%		G3JB31              	100.00%
Bootstrap support for F6XSL1 as seed ortholog is 99%.
Bootstrap support for G3JB31 as seed ortholog is 100%.

Group of orthologs #386. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 C.militaris:381

F6PX61              	100.00%		G3JBK2              	100.00%
Bootstrap support for F6PX61 as seed ortholog is 100%.
Bootstrap support for G3JBK2 as seed ortholog is 100%.

Group of orthologs #387. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 C.militaris:381

F7A5J2              	100.00%		G3JKQ3              	100.00%
Bootstrap support for F7A5J2 as seed ortholog is 100%.
Bootstrap support for G3JKQ3 as seed ortholog is 100%.

Group of orthologs #388. Best score 381 bits
Score difference with first non-orthologous sequence - C.intestinalis:381 C.militaris:381

Q1RLG4              	100.00%		G3JJF0              	100.00%
Bootstrap support for Q1RLG4 as seed ortholog is 100%.
Bootstrap support for G3JJF0 as seed ortholog is 100%.

Group of orthologs #389. Best score 379 bits
Score difference with first non-orthologous sequence - C.intestinalis:379 C.militaris:379

F7B0I1              	100.00%		G3J6H5              	100.00%
Bootstrap support for F7B0I1 as seed ortholog is 100%.
Bootstrap support for G3J6H5 as seed ortholog is 100%.

Group of orthologs #390. Best score 379 bits
Score difference with first non-orthologous sequence - C.intestinalis:379 C.militaris:124

H2XLC1              	100.00%		G3JBW3              	100.00%
Bootstrap support for H2XLC1 as seed ortholog is 100%.
Bootstrap support for G3JBW3 as seed ortholog is 99%.

Group of orthologs #391. Best score 378 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:378

F7A5Y1              	100.00%		G3J9Z3              	100.00%
                    	       		G3JQQ6              	30.73%
Bootstrap support for F7A5Y1 as seed ortholog is 99%.
Bootstrap support for G3J9Z3 as seed ortholog is 100%.

Group of orthologs #392. Best score 378 bits
Score difference with first non-orthologous sequence - C.intestinalis:378 C.militaris:378

H2XKA9              	100.00%		G3JIC7              	100.00%
Bootstrap support for H2XKA9 as seed ortholog is 100%.
Bootstrap support for G3JIC7 as seed ortholog is 100%.

Group of orthologs #393. Best score 377 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:244

H2Y0P6              	100.00%		G3J760              	100.00%
Bootstrap support for H2Y0P6 as seed ortholog is 96%.
Bootstrap support for G3J760 as seed ortholog is 99%.

Group of orthologs #394. Best score 376 bits
Score difference with first non-orthologous sequence - C.intestinalis:376 C.militaris:282

F6SYF4              	100.00%		G3J2R7              	100.00%
Bootstrap support for F6SYF4 as seed ortholog is 100%.
Bootstrap support for G3J2R7 as seed ortholog is 100%.

Group of orthologs #395. Best score 376 bits
Score difference with first non-orthologous sequence - C.intestinalis:376 C.militaris:376

H2XS37              	100.00%		G3J5X1              	100.00%
Bootstrap support for H2XS37 as seed ortholog is 100%.
Bootstrap support for G3J5X1 as seed ortholog is 100%.

Group of orthologs #396. Best score 376 bits
Score difference with first non-orthologous sequence - C.intestinalis:376 C.militaris:376

F6Y1N2              	100.00%		G3JNB5              	100.00%
Bootstrap support for F6Y1N2 as seed ortholog is 100%.
Bootstrap support for G3JNB5 as seed ortholog is 100%.

Group of orthologs #397. Best score 374 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:211

F6SUS9              	100.00%		G3JDX3              	100.00%
Bootstrap support for F6SUS9 as seed ortholog is 99%.
Bootstrap support for G3JDX3 as seed ortholog is 100%.

Group of orthologs #398. Best score 374 bits
Score difference with first non-orthologous sequence - C.intestinalis:374 C.militaris:374

H2XJK0              	100.00%		G3JH86              	100.00%
Bootstrap support for H2XJK0 as seed ortholog is 100%.
Bootstrap support for G3JH86 as seed ortholog is 100%.

Group of orthologs #399. Best score 373 bits
Score difference with first non-orthologous sequence - C.intestinalis:373 C.militaris:373

F6VT08              	100.00%		G3J2T9              	100.00%
Bootstrap support for F6VT08 as seed ortholog is 100%.
Bootstrap support for G3J2T9 as seed ortholog is 100%.

Group of orthologs #400. Best score 372 bits
Score difference with first non-orthologous sequence - C.intestinalis:372 C.militaris:280

F6SSW4              	100.00%		G3J7I6              	100.00%
Bootstrap support for F6SSW4 as seed ortholog is 100%.
Bootstrap support for G3J7I6 as seed ortholog is 100%.

Group of orthologs #401. Best score 372 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.militaris:34

F7B1X4              	100.00%		G3JDB0              	100.00%
Bootstrap support for F7B1X4 as seed ortholog is 100%.
Bootstrap support for G3JDB0 as seed ortholog is 77%.

Group of orthologs #402. Best score 371 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 C.militaris:275

F6RCR9              	100.00%		G3JKB0              	100.00%
Bootstrap support for F6RCR9 as seed ortholog is 100%.
Bootstrap support for G3JKB0 as seed ortholog is 100%.

Group of orthologs #403. Best score 371 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.militaris:169

F6T1J8              	100.00%		G3JKX3              	100.00%
Bootstrap support for F6T1J8 as seed ortholog is 99%.
Bootstrap support for G3JKX3 as seed ortholog is 99%.

Group of orthologs #404. Best score 371 bits
Score difference with first non-orthologous sequence - C.intestinalis:371 C.militaris:92

F6UTV1              	100.00%		G3JLZ6              	100.00%
Bootstrap support for F6UTV1 as seed ortholog is 100%.
Bootstrap support for G3JLZ6 as seed ortholog is 99%.

Group of orthologs #405. Best score 371 bits
Score difference with first non-orthologous sequence - C.intestinalis:371 C.militaris:371

F7AJP1              	100.00%		G3JJD6              	100.00%
Bootstrap support for F7AJP1 as seed ortholog is 100%.
Bootstrap support for G3JJD6 as seed ortholog is 100%.

Group of orthologs #406. Best score 371 bits
Score difference with first non-orthologous sequence - C.intestinalis:371 C.militaris:371

H2Y0W9              	100.00%		G3JB24              	100.00%
Bootstrap support for H2Y0W9 as seed ortholog is 100%.
Bootstrap support for G3JB24 as seed ortholog is 100%.

Group of orthologs #407. Best score 369 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 C.militaris:369

F6SBG8              	100.00%		G3JH04              	100.00%
Bootstrap support for F6SBG8 as seed ortholog is 100%.
Bootstrap support for G3JH04 as seed ortholog is 100%.

Group of orthologs #408. Best score 368 bits
Score difference with first non-orthologous sequence - C.intestinalis:368 C.militaris:182

F6TLX8              	100.00%		G3JKH5              	100.00%
Bootstrap support for F6TLX8 as seed ortholog is 100%.
Bootstrap support for G3JKH5 as seed ortholog is 99%.

Group of orthologs #409. Best score 368 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:158

F6UJS3              	100.00%		G3JLI4              	100.00%
Bootstrap support for F6UJS3 as seed ortholog is 99%.
Bootstrap support for G3JLI4 as seed ortholog is 99%.

Group of orthologs #410. Best score 367 bits
Score difference with first non-orthologous sequence - C.intestinalis:367 C.militaris:367

F6X056              	100.00%		G3J398              	100.00%
Bootstrap support for F6X056 as seed ortholog is 100%.
Bootstrap support for G3J398 as seed ortholog is 100%.

Group of orthologs #411. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:366 C.militaris:286

H2XL64              	100.00%		G3J3U5              	100.00%
Bootstrap support for H2XL64 as seed ortholog is 100%.
Bootstrap support for G3J3U5 as seed ortholog is 99%.

Group of orthologs #412. Best score 366 bits
Score difference with first non-orthologous sequence - C.intestinalis:366 C.militaris:366

F6VUM2              	100.00%		G3JNM6              	100.00%
Bootstrap support for F6VUM2 as seed ortholog is 100%.
Bootstrap support for G3JNM6 as seed ortholog is 100%.

Group of orthologs #413. Best score 365 bits
Score difference with first non-orthologous sequence - C.intestinalis:365 C.militaris:365

F6ZHM4              	100.00%		G3J440              	100.00%
Bootstrap support for F6ZHM4 as seed ortholog is 100%.
Bootstrap support for G3J440 as seed ortholog is 100%.

Group of orthologs #414. Best score 365 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:365

F7AZV0              	100.00%		G3J3S3              	100.00%
Bootstrap support for F7AZV0 as seed ortholog is 100%.
Bootstrap support for G3J3S3 as seed ortholog is 100%.

Group of orthologs #415. Best score 363 bits
Score difference with first non-orthologous sequence - C.intestinalis:363 C.militaris:167

H2XVI6              	100.00%		G3JCV7              	100.00%
Bootstrap support for H2XVI6 as seed ortholog is 100%.
Bootstrap support for G3JCV7 as seed ortholog is 100%.

Group of orthologs #416. Best score 361 bits
Score difference with first non-orthologous sequence - C.intestinalis:361 C.militaris:361

F7A2G6              	100.00%		G3JC48              	100.00%
H2XP90              	16.64%		
H2XYS1              	7.78%		
Bootstrap support for F7A2G6 as seed ortholog is 100%.
Bootstrap support for G3JC48 as seed ortholog is 100%.

Group of orthologs #417. Best score 361 bits
Score difference with first non-orthologous sequence - C.intestinalis:361 C.militaris:361

F6UGN5              	100.00%		G3J3L7              	100.00%
Bootstrap support for F6UGN5 as seed ortholog is 100%.
Bootstrap support for G3J3L7 as seed ortholog is 100%.

Group of orthologs #418. Best score 360 bits
Score difference with first non-orthologous sequence - C.intestinalis:360 C.militaris:77

F6SZU4              	100.00%		G3JSJ7              	100.00%
F6T060              	100.00%		G3JGX6              	34.68%
Bootstrap support for F6SZU4 as seed ortholog is 100%.
Bootstrap support for F6T060 as seed ortholog is 100%.
Bootstrap support for G3JSJ7 as seed ortholog is 92%.

Group of orthologs #419. Best score 360 bits
Score difference with first non-orthologous sequence - C.intestinalis:360 C.militaris:360

F6Q9C5              	100.00%		G3JGJ1              	100.00%
Bootstrap support for F6Q9C5 as seed ortholog is 100%.
Bootstrap support for G3JGJ1 as seed ortholog is 100%.

Group of orthologs #420. Best score 360 bits
Score difference with first non-orthologous sequence - C.intestinalis:360 C.militaris:360

F6XP34              	100.00%		G3JHW7              	100.00%
Bootstrap support for F6XP34 as seed ortholog is 100%.
Bootstrap support for G3JHW7 as seed ortholog is 100%.

Group of orthologs #421. Best score 359 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:359

F6ST44              	100.00%		G3J7X2              	100.00%
Bootstrap support for F6ST44 as seed ortholog is 89%.
Bootstrap support for G3J7X2 as seed ortholog is 100%.

Group of orthologs #422. Best score 358 bits
Score difference with first non-orthologous sequence - C.intestinalis:358 C.militaris:270

F7AYB9              	100.00%		G3J9Q3              	100.00%
Bootstrap support for F7AYB9 as seed ortholog is 100%.
Bootstrap support for G3J9Q3 as seed ortholog is 100%.

Group of orthologs #423. Best score 358 bits
Score difference with first non-orthologous sequence - C.intestinalis:358 C.militaris:358

F6WNR2              	100.00%		G3JSQ8              	100.00%
Bootstrap support for F6WNR2 as seed ortholog is 100%.
Bootstrap support for G3JSQ8 as seed ortholog is 100%.

Group of orthologs #424. Best score 358 bits
Score difference with first non-orthologous sequence - C.intestinalis:358 C.militaris:358

F6XDI5              	100.00%		G3JRD0              	100.00%
Bootstrap support for F6XDI5 as seed ortholog is 100%.
Bootstrap support for G3JRD0 as seed ortholog is 100%.

Group of orthologs #425. Best score 358 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 C.militaris:358

L7N0S3              	100.00%		G3J8G8              	100.00%
Bootstrap support for L7N0S3 as seed ortholog is 100%.
Bootstrap support for G3J8G8 as seed ortholog is 100%.

Group of orthologs #426. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:357 C.militaris:357

F6WLN1              	100.00%		G3J818              	100.00%
Bootstrap support for F6WLN1 as seed ortholog is 100%.
Bootstrap support for G3J818 as seed ortholog is 100%.

Group of orthologs #427. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:357 C.militaris:357

F6V6M0              	100.00%		G3JHQ2              	100.00%
Bootstrap support for F6V6M0 as seed ortholog is 100%.
Bootstrap support for G3JHQ2 as seed ortholog is 100%.

Group of orthologs #428. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:357

F6SUA6              	100.00%		G3JP44              	100.00%
Bootstrap support for F6SUA6 as seed ortholog is 99%.
Bootstrap support for G3JP44 as seed ortholog is 100%.

Group of orthologs #429. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:357 C.militaris:357

H2XZG0              	100.00%		G3JJP7              	100.00%
Bootstrap support for H2XZG0 as seed ortholog is 100%.
Bootstrap support for G3JJP7 as seed ortholog is 100%.

Group of orthologs #430. Best score 357 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:357

H2Y323              	100.00%		G3JSS7              	100.00%
Bootstrap support for H2Y323 as seed ortholog is 99%.
Bootstrap support for G3JSS7 as seed ortholog is 100%.

Group of orthologs #431. Best score 355 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:41

F6QSR3              	100.00%		G3JKK3              	100.00%
Bootstrap support for F6QSR3 as seed ortholog is 86%.
Bootstrap support for G3JKK3 as seed ortholog is 74%.
Alternative seed ortholog is G3J2K7 (41 bits away from this cluster)

Group of orthologs #432. Best score 355 bits
Score difference with first non-orthologous sequence - C.intestinalis:355 C.militaris:355

H2XWZ0              	100.00%		G3JC03              	100.00%
Bootstrap support for H2XWZ0 as seed ortholog is 100%.
Bootstrap support for G3JC03 as seed ortholog is 100%.

Group of orthologs #433. Best score 354 bits
Score difference with first non-orthologous sequence - C.intestinalis:354 C.militaris:223

H2XUE4              	100.00%		G3JD95              	100.00%
Bootstrap support for H2XUE4 as seed ortholog is 100%.
Bootstrap support for G3JD95 as seed ortholog is 100%.

Group of orthologs #434. Best score 353 bits
Score difference with first non-orthologous sequence - C.intestinalis:353 C.militaris:291

F6Q096              	100.00%		G3JBD9              	100.00%
Bootstrap support for F6Q096 as seed ortholog is 100%.
Bootstrap support for G3JBD9 as seed ortholog is 100%.

Group of orthologs #435. Best score 352 bits
Score difference with first non-orthologous sequence - C.intestinalis:352 C.militaris:352

F6VKI2              	100.00%		G3J352              	100.00%
Bootstrap support for F6VKI2 as seed ortholog is 100%.
Bootstrap support for G3J352 as seed ortholog is 100%.

Group of orthologs #436. Best score 351 bits
Score difference with first non-orthologous sequence - C.intestinalis:351 C.militaris:351

F6TC91              	100.00%		G3JM36              	100.00%
Bootstrap support for F6TC91 as seed ortholog is 100%.
Bootstrap support for G3JM36 as seed ortholog is 100%.

Group of orthologs #437. Best score 351 bits
Score difference with first non-orthologous sequence - C.intestinalis:351 C.militaris:351

H2XM91              	100.00%		G3J2N0              	100.00%
Bootstrap support for H2XM91 as seed ortholog is 100%.
Bootstrap support for G3J2N0 as seed ortholog is 100%.

Group of orthologs #438. Best score 349 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.militaris:349

F6SJ40              	100.00%		G3JGZ8              	100.00%
Bootstrap support for F6SJ40 as seed ortholog is 100%.
Bootstrap support for G3JGZ8 as seed ortholog is 100%.

Group of orthologs #439. Best score 349 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 C.militaris:248

F6VEU2              	100.00%		G3JV08              	100.00%
Bootstrap support for F6VEU2 as seed ortholog is 100%.
Bootstrap support for G3JV08 as seed ortholog is 100%.

Group of orthologs #440. Best score 349 bits
Score difference with first non-orthologous sequence - C.intestinalis:349 C.militaris:349

F7BLS5              	100.00%		G3JGV2              	100.00%
Bootstrap support for F7BLS5 as seed ortholog is 100%.
Bootstrap support for G3JGV2 as seed ortholog is 100%.

Group of orthologs #441. Best score 349 bits
Score difference with first non-orthologous sequence - C.intestinalis:349 C.militaris:349

F6ZX12              	100.00%		G3JM02              	100.00%
Bootstrap support for F6ZX12 as seed ortholog is 100%.
Bootstrap support for G3JM02 as seed ortholog is 100%.

Group of orthologs #442. Best score 348 bits
Score difference with first non-orthologous sequence - C.intestinalis:348 C.militaris:348

F6RN60              	100.00%		G3JNP9              	100.00%
Bootstrap support for F6RN60 as seed ortholog is 100%.
Bootstrap support for G3JNP9 as seed ortholog is 100%.

Group of orthologs #443. Best score 347 bits
Score difference with first non-orthologous sequence - C.intestinalis:347 C.militaris:347

F6XCG6              	100.00%		G3J8A7              	100.00%
Bootstrap support for F6XCG6 as seed ortholog is 100%.
Bootstrap support for G3J8A7 as seed ortholog is 100%.

Group of orthologs #444. Best score 346 bits
Score difference with first non-orthologous sequence - C.intestinalis:346 C.militaris:346

F6QF37              	100.00%		G3JKX6              	100.00%
                    	       		G3JQS5              	22.24%
Bootstrap support for F6QF37 as seed ortholog is 100%.
Bootstrap support for G3JKX6 as seed ortholog is 100%.

Group of orthologs #445. Best score 346 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:346

F7BH52              	100.00%		G3JGW6              	100.00%
Bootstrap support for F7BH52 as seed ortholog is 97%.
Bootstrap support for G3JGW6 as seed ortholog is 100%.

Group of orthologs #446. Best score 345 bits
Score difference with first non-orthologous sequence - C.intestinalis:345 C.militaris:345

F6SZ37              	100.00%		G3JKY9              	100.00%
Bootstrap support for F6SZ37 as seed ortholog is 100%.
Bootstrap support for G3JKY9 as seed ortholog is 100%.

Group of orthologs #447. Best score 345 bits
Score difference with first non-orthologous sequence - C.intestinalis:345 C.militaris:345

F6X600              	100.00%		G3JN72              	100.00%
Bootstrap support for F6X600 as seed ortholog is 100%.
Bootstrap support for G3JN72 as seed ortholog is 100%.

Group of orthologs #448. Best score 345 bits
Score difference with first non-orthologous sequence - C.intestinalis:269 C.militaris:345

F7B7E9              	100.00%		G3JP51              	100.00%
Bootstrap support for F7B7E9 as seed ortholog is 100%.
Bootstrap support for G3JP51 as seed ortholog is 100%.

Group of orthologs #449. Best score 345 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 C.militaris:345

H2XYW0              	100.00%		G3JPX8              	100.00%
Bootstrap support for H2XYW0 as seed ortholog is 100%.
Bootstrap support for G3JPX8 as seed ortholog is 100%.

Group of orthologs #450. Best score 344 bits
Score difference with first non-orthologous sequence - C.intestinalis:344 C.militaris:344

F6QLM7              	100.00%		G3JAJ5              	100.00%
Bootstrap support for F6QLM7 as seed ortholog is 100%.
Bootstrap support for G3JAJ5 as seed ortholog is 100%.

Group of orthologs #451. Best score 344 bits
Score difference with first non-orthologous sequence - C.intestinalis:226 C.militaris:344

F6UJ45              	100.00%		G3JHN2              	100.00%
Bootstrap support for F6UJ45 as seed ortholog is 100%.
Bootstrap support for G3JHN2 as seed ortholog is 100%.

Group of orthologs #452. Best score 343 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:11

F6YJQ7              	100.00%		G3J6L6              	100.00%
Bootstrap support for F6YJQ7 as seed ortholog is 91%.
Bootstrap support for G3J6L6 as seed ortholog is 56%.
Alternative seed ortholog is G3JNC3 (11 bits away from this cluster)

Group of orthologs #453. Best score 342 bits
Score difference with first non-orthologous sequence - C.intestinalis:342 C.militaris:342

F6VYC6              	100.00%		G3JF68              	100.00%
Bootstrap support for F6VYC6 as seed ortholog is 100%.
Bootstrap support for G3JF68 as seed ortholog is 100%.

Group of orthologs #454. Best score 342 bits
Score difference with first non-orthologous sequence - C.intestinalis:293 C.militaris:342

F7BDV2              	100.00%		G3JL30              	100.00%
Bootstrap support for F7BDV2 as seed ortholog is 100%.
Bootstrap support for G3JL30 as seed ortholog is 100%.

Group of orthologs #455. Best score 341 bits
Score difference with first non-orthologous sequence - C.intestinalis:341 C.militaris:341

F6Z5P6              	100.00%		G3JD42              	100.00%
F6ZTZ7              	67.75%		
Bootstrap support for F6Z5P6 as seed ortholog is 100%.
Bootstrap support for G3JD42 as seed ortholog is 100%.

Group of orthologs #456. Best score 341 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:341

F6X753              	100.00%		G3JIB5              	100.00%
L7N0R8              	13.25%		
Bootstrap support for F6X753 as seed ortholog is 95%.
Bootstrap support for G3JIB5 as seed ortholog is 100%.

Group of orthologs #457. Best score 341 bits
Score difference with first non-orthologous sequence - C.intestinalis:341 C.militaris:167

F6SKP5              	100.00%		G3JGE1              	100.00%
Bootstrap support for F6SKP5 as seed ortholog is 100%.
Bootstrap support for G3JGE1 as seed ortholog is 99%.

Group of orthologs #458. Best score 340 bits
Score difference with first non-orthologous sequence - C.intestinalis:340 C.militaris:340

F6TLL4              	100.00%		G3J4T3              	100.00%
Bootstrap support for F6TLL4 as seed ortholog is 100%.
Bootstrap support for G3J4T3 as seed ortholog is 100%.

Group of orthologs #459. Best score 340 bits
Score difference with first non-orthologous sequence - C.intestinalis:340 C.militaris:340

F6WAW7              	100.00%		G3J6H0              	100.00%
Bootstrap support for F6WAW7 as seed ortholog is 100%.
Bootstrap support for G3J6H0 as seed ortholog is 100%.

Group of orthologs #460. Best score 340 bits
Score difference with first non-orthologous sequence - C.intestinalis:340 C.militaris:340

F6ZZH3              	100.00%		G3JRR5              	100.00%
Bootstrap support for F6ZZH3 as seed ortholog is 100%.
Bootstrap support for G3JRR5 as seed ortholog is 100%.

Group of orthologs #461. Best score 339 bits
Score difference with first non-orthologous sequence - C.intestinalis:339 C.militaris:339

F7BKI5              	100.00%		G3JGC1              	100.00%
Bootstrap support for F7BKI5 as seed ortholog is 100%.
Bootstrap support for G3JGC1 as seed ortholog is 100%.

Group of orthologs #462. Best score 339 bits
Score difference with first non-orthologous sequence - C.intestinalis:339 C.militaris:339

H2Y288              	100.00%		G3J724              	100.00%
Bootstrap support for H2Y288 as seed ortholog is 100%.
Bootstrap support for G3J724 as seed ortholog is 100%.

Group of orthologs #463. Best score 339 bits
Score difference with first non-orthologous sequence - C.intestinalis:339 C.militaris:339

H2XL83              	100.00%		G3JSZ1              	100.00%
Bootstrap support for H2XL83 as seed ortholog is 100%.
Bootstrap support for G3JSZ1 as seed ortholog is 100%.

Group of orthologs #464. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:222 C.militaris:338

F7ABR6              	100.00%		G3J5G2              	100.00%
F6ZI02              	18.16%		
H2XY21              	13.52%		
Bootstrap support for F7ABR6 as seed ortholog is 99%.
Bootstrap support for G3J5G2 as seed ortholog is 100%.

Group of orthologs #465. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 C.militaris:338

F6UHI7              	100.00%		G3JET6              	100.00%
Bootstrap support for F6UHI7 as seed ortholog is 100%.
Bootstrap support for G3JET6 as seed ortholog is 100%.

Group of orthologs #466. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:338 C.militaris:338

F6ZLM3              	100.00%		G3JKF4              	100.00%
Bootstrap support for F6ZLM3 as seed ortholog is 100%.
Bootstrap support for G3JKF4 as seed ortholog is 100%.

Group of orthologs #467. Best score 338 bits
Score difference with first non-orthologous sequence - C.intestinalis:338 C.militaris:338

H2XP51              	100.00%		G3JH67              	100.00%
Bootstrap support for H2XP51 as seed ortholog is 100%.
Bootstrap support for G3JH67 as seed ortholog is 100%.

Group of orthologs #468. Best score 337 bits
Score difference with first non-orthologous sequence - C.intestinalis:337 C.militaris:337

F7BBT3              	100.00%		G3JHM1              	100.00%
Bootstrap support for F7BBT3 as seed ortholog is 100%.
Bootstrap support for G3JHM1 as seed ortholog is 100%.

Group of orthologs #469. Best score 337 bits
Score difference with first non-orthologous sequence - C.intestinalis:337 C.militaris:337

H2XVC3              	100.00%		G3JR21              	100.00%
Bootstrap support for H2XVC3 as seed ortholog is 100%.
Bootstrap support for G3JR21 as seed ortholog is 100%.

Group of orthologs #470. Best score 335 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 C.militaris:335

H2XWR9              	100.00%		G3J6T6              	100.00%
                    	       		G3J9R6              	16.83%
Bootstrap support for H2XWR9 as seed ortholog is 100%.
Bootstrap support for G3J6T6 as seed ortholog is 100%.

Group of orthologs #471. Best score 334 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 C.militaris:266

F6U4H3              	100.00%		G3JQC8              	100.00%
F7B684              	5.28%		G3JNC7              	42.75%
                    	       		G3JS17              	31.57%
Bootstrap support for F6U4H3 as seed ortholog is 100%.
Bootstrap support for G3JQC8 as seed ortholog is 100%.

Group of orthologs #472. Best score 334 bits
Score difference with first non-orthologous sequence - C.intestinalis:334 C.militaris:334

F6Z7S0              	100.00%		G3J7A9              	100.00%
Bootstrap support for F6Z7S0 as seed ortholog is 100%.
Bootstrap support for G3J7A9 as seed ortholog is 100%.

Group of orthologs #473. Best score 334 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:138

F6X4N7              	100.00%		G3JCX7              	100.00%
Bootstrap support for F6X4N7 as seed ortholog is 100%.
Bootstrap support for G3JCX7 as seed ortholog is 100%.

Group of orthologs #474. Best score 333 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 C.militaris:197

F6YNQ3              	100.00%		G3J655              	100.00%
Bootstrap support for F6YNQ3 as seed ortholog is 53%.
Alternative seed ortholog is F6X7W0 (3 bits away from this cluster)
Bootstrap support for G3J655 as seed ortholog is 100%.

Group of orthologs #475. Best score 333 bits
Score difference with first non-orthologous sequence - C.intestinalis:281 C.militaris:333

F7A7C3              	100.00%		G3JG30              	100.00%
Bootstrap support for F7A7C3 as seed ortholog is 100%.
Bootstrap support for G3JG30 as seed ortholog is 100%.

Group of orthologs #476. Best score 333 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 C.militaris:41

F7ARV5              	100.00%		G3JH82              	100.00%
Bootstrap support for F7ARV5 as seed ortholog is 99%.
Bootstrap support for G3JH82 as seed ortholog is 87%.

Group of orthologs #477. Best score 333 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:333

F6YKJ2              	100.00%		G3JPP9              	100.00%
Bootstrap support for F6YKJ2 as seed ortholog is 99%.
Bootstrap support for G3JPP9 as seed ortholog is 100%.

Group of orthologs #478. Best score 332 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:332

F6QXQ1              	100.00%		G3J333              	100.00%
F6PPW9              	28.80%		
Bootstrap support for F6QXQ1 as seed ortholog is 100%.
Bootstrap support for G3J333 as seed ortholog is 100%.

Group of orthologs #479. Best score 332 bits
Score difference with first non-orthologous sequence - C.intestinalis:332 C.militaris:332

H2Y2G1              	100.00%		G3JL95              	100.00%
Bootstrap support for H2Y2G1 as seed ortholog is 100%.
Bootstrap support for G3JL95 as seed ortholog is 100%.

Group of orthologs #480. Best score 332 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 C.militaris:169

H2XY01              	100.00%		G3JTL5              	100.00%
Bootstrap support for H2XY01 as seed ortholog is 99%.
Bootstrap support for G3JTL5 as seed ortholog is 99%.

Group of orthologs #481. Best score 331 bits
Score difference with first non-orthologous sequence - C.intestinalis:331 C.militaris:331

F6U8B5              	100.00%		G3J3X2              	100.00%
Bootstrap support for F6U8B5 as seed ortholog is 100%.
Bootstrap support for G3J3X2 as seed ortholog is 100%.

Group of orthologs #482. Best score 331 bits
Score difference with first non-orthologous sequence - C.intestinalis:331 C.militaris:331

F6VAT4              	100.00%		G3J4N4              	100.00%
Bootstrap support for F6VAT4 as seed ortholog is 100%.
Bootstrap support for G3J4N4 as seed ortholog is 100%.

Group of orthologs #483. Best score 331 bits
Score difference with first non-orthologous sequence - C.intestinalis:331 C.militaris:331

F6RA65              	100.00%		G3JKX1              	100.00%
Bootstrap support for F6RA65 as seed ortholog is 100%.
Bootstrap support for G3JKX1 as seed ortholog is 100%.

Group of orthologs #484. Best score 330 bits
Score difference with first non-orthologous sequence - C.intestinalis:330 C.militaris:330

H2XTN7              	100.00%		G3JQK1              	100.00%
F6W1V5              	6.76%		
Bootstrap support for H2XTN7 as seed ortholog is 100%.
Bootstrap support for G3JQK1 as seed ortholog is 100%.

Group of orthologs #485. Best score 329 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:329

F7A2K6              	100.00%		G3JH08              	100.00%
                    	       		G3J9X9              	24.09%
                    	       		G3JCD1              	22.85%
Bootstrap support for F7A2K6 as seed ortholog is 90%.
Bootstrap support for G3JH08 as seed ortholog is 100%.

Group of orthologs #486. Best score 329 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:188

F6TZU9              	100.00%		G3J3G5              	100.00%
Bootstrap support for F6TZU9 as seed ortholog is 100%.
Bootstrap support for G3J3G5 as seed ortholog is 99%.

Group of orthologs #487. Best score 329 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:103

F6TAK3              	100.00%		G3J7Y1              	100.00%
Bootstrap support for F6TAK3 as seed ortholog is 100%.
Bootstrap support for G3J7Y1 as seed ortholog is 99%.

Group of orthologs #488. Best score 329 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:329

F6ZGD4              	100.00%		G3JPZ1              	100.00%
Bootstrap support for F6ZGD4 as seed ortholog is 100%.
Bootstrap support for G3JPZ1 as seed ortholog is 100%.

Group of orthologs #489. Best score 329 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:329

F7ANR5              	100.00%		G3JM80              	100.00%
Bootstrap support for F7ANR5 as seed ortholog is 100%.
Bootstrap support for G3JM80 as seed ortholog is 100%.

Group of orthologs #490. Best score 329 bits
Score difference with first non-orthologous sequence - C.intestinalis:329 C.militaris:329

F7A1R5              	100.00%		G3JPM7              	100.00%
Bootstrap support for F7A1R5 as seed ortholog is 100%.
Bootstrap support for G3JPM7 as seed ortholog is 100%.

Group of orthologs #491. Best score 328 bits
Score difference with first non-orthologous sequence - C.intestinalis:328 C.militaris:328

F6RJV3              	100.00%		G3JCP9              	100.00%
Bootstrap support for F6RJV3 as seed ortholog is 100%.
Bootstrap support for G3JCP9 as seed ortholog is 100%.

Group of orthologs #492. Best score 328 bits
Score difference with first non-orthologous sequence - C.intestinalis:328 C.militaris:328

F6RBT7              	100.00%		G3JJM3              	100.00%
Bootstrap support for F6RBT7 as seed ortholog is 100%.
Bootstrap support for G3JJM3 as seed ortholog is 100%.

Group of orthologs #493. Best score 328 bits
Score difference with first non-orthologous sequence - C.intestinalis:328 C.militaris:328

F6UQL0              	100.00%		G3JH52              	100.00%
Bootstrap support for F6UQL0 as seed ortholog is 100%.
Bootstrap support for G3JH52 as seed ortholog is 100%.

Group of orthologs #494. Best score 328 bits
Score difference with first non-orthologous sequence - C.intestinalis:328 C.militaris:328

H2XWE4              	100.00%		G3JK80              	100.00%
Bootstrap support for H2XWE4 as seed ortholog is 100%.
Bootstrap support for G3JK80 as seed ortholog is 100%.

Group of orthologs #495. Best score 327 bits
Score difference with first non-orthologous sequence - C.intestinalis:327 C.militaris:250

F6XMM6              	100.00%		G3JA32              	100.00%
Bootstrap support for F6XMM6 as seed ortholog is 100%.
Bootstrap support for G3JA32 as seed ortholog is 100%.

Group of orthologs #496. Best score 327 bits
Score difference with first non-orthologous sequence - C.intestinalis:327 C.militaris:327

F6XKQ1              	100.00%		G3JDF3              	100.00%
Bootstrap support for F6XKQ1 as seed ortholog is 100%.
Bootstrap support for G3JDF3 as seed ortholog is 100%.

Group of orthologs #497. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 C.militaris:175

F6Q7A6              	100.00%		G3J8E3              	100.00%
Bootstrap support for F6Q7A6 as seed ortholog is 100%.
Bootstrap support for G3J8E3 as seed ortholog is 100%.

Group of orthologs #498. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:326 C.militaris:65

F7B7H5              	100.00%		G3JQH6              	100.00%
Bootstrap support for F7B7H5 as seed ortholog is 100%.
Bootstrap support for G3JQH6 as seed ortholog is 91%.

Group of orthologs #499. Best score 326 bits
Score difference with first non-orthologous sequence - C.intestinalis:326 C.militaris:326

F7BIS1              	100.00%		G3JQ22              	100.00%
Bootstrap support for F7BIS1 as seed ortholog is 100%.
Bootstrap support for G3JQ22 as seed ortholog is 100%.

Group of orthologs #500. Best score 325 bits
Score difference with first non-orthologous sequence - C.intestinalis:325 C.militaris:325

F6TXT5              	100.00%		G3JPP8              	100.00%
Bootstrap support for F6TXT5 as seed ortholog is 100%.
Bootstrap support for G3JPP8 as seed ortholog is 100%.

Group of orthologs #501. Best score 325 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:325

F7B690              	100.00%		G3JFY1              	100.00%
Bootstrap support for F7B690 as seed ortholog is 100%.
Bootstrap support for G3JFY1 as seed ortholog is 100%.

Group of orthologs #502. Best score 324 bits
Score difference with first non-orthologous sequence - C.intestinalis:324 C.militaris:324

F6SIX8              	100.00%		G3JCJ8              	100.00%
Bootstrap support for F6SIX8 as seed ortholog is 100%.
Bootstrap support for G3JCJ8 as seed ortholog is 100%.

Group of orthologs #503. Best score 324 bits
Score difference with first non-orthologous sequence - C.intestinalis:324 C.militaris:324

F6S8S3              	100.00%		G3JKY4              	100.00%
Bootstrap support for F6S8S3 as seed ortholog is 100%.
Bootstrap support for G3JKY4 as seed ortholog is 100%.

Group of orthologs #504. Best score 324 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 C.militaris:250

F6U1E2              	100.00%		G3JKI2              	100.00%
Bootstrap support for F6U1E2 as seed ortholog is 100%.
Bootstrap support for G3JKI2 as seed ortholog is 100%.

Group of orthologs #505. Best score 323 bits
Score difference with first non-orthologous sequence - C.intestinalis:323 C.militaris:323

F6W141              	100.00%		G3JFF7              	100.00%
Bootstrap support for F6W141 as seed ortholog is 100%.
Bootstrap support for G3JFF7 as seed ortholog is 100%.

Group of orthologs #506. Best score 322 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.militaris:322

F6Z3V6              	100.00%		G3JCI0              	100.00%
Bootstrap support for F6Z3V6 as seed ortholog is 100%.
Bootstrap support for G3JCI0 as seed ortholog is 100%.

Group of orthologs #507. Best score 322 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.militaris:322

F6V136              	100.00%		G3JQY5              	100.00%
Bootstrap support for F6V136 as seed ortholog is 100%.
Bootstrap support for G3JQY5 as seed ortholog is 100%.

Group of orthologs #508. Best score 322 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.militaris:322

F6ZRT4              	100.00%		G3JMF9              	100.00%
Bootstrap support for F6ZRT4 as seed ortholog is 100%.
Bootstrap support for G3JMF9 as seed ortholog is 100%.

Group of orthologs #509. Best score 322 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.militaris:322

H2XUA5              	100.00%		G3JJX6              	100.00%
Bootstrap support for H2XUA5 as seed ortholog is 100%.
Bootstrap support for G3JJX6 as seed ortholog is 100%.

Group of orthologs #510. Best score 322 bits
Score difference with first non-orthologous sequence - C.intestinalis:322 C.militaris:322

H2Y1U3              	100.00%		G3JQI3              	100.00%
Bootstrap support for H2Y1U3 as seed ortholog is 100%.
Bootstrap support for G3JQI3 as seed ortholog is 100%.

Group of orthologs #511. Best score 321 bits
Score difference with first non-orthologous sequence - C.intestinalis:321 C.militaris:321

F6YEQ8              	100.00%		G3J434              	100.00%
Bootstrap support for F6YEQ8 as seed ortholog is 100%.
Bootstrap support for G3J434 as seed ortholog is 100%.

Group of orthologs #512. Best score 320 bits
Score difference with first non-orthologous sequence - C.intestinalis:320 C.militaris:320

F7A172              	100.00%		G3JR85              	100.00%
Bootstrap support for F7A172 as seed ortholog is 100%.
Bootstrap support for G3JR85 as seed ortholog is 100%.

Group of orthologs #513. Best score 320 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:320

H2Y2S2              	100.00%		G3JNV5              	100.00%
Bootstrap support for H2Y2S2 as seed ortholog is 99%.
Bootstrap support for G3JNV5 as seed ortholog is 100%.

Group of orthologs #514. Best score 318 bits
Score difference with first non-orthologous sequence - C.intestinalis:318 C.militaris:318

F6SID0              	100.00%		G3J7T0              	100.00%
Bootstrap support for F6SID0 as seed ortholog is 100%.
Bootstrap support for G3J7T0 as seed ortholog is 100%.

Group of orthologs #515. Best score 318 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:145

F6RKK1              	100.00%		G3JHD3              	100.00%
Bootstrap support for F6RKK1 as seed ortholog is 95%.
Bootstrap support for G3JHD3 as seed ortholog is 99%.

Group of orthologs #516. Best score 318 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 C.militaris:318

F7ATT1              	100.00%		G3JLQ0              	100.00%
Bootstrap support for F7ATT1 as seed ortholog is 100%.
Bootstrap support for G3JLQ0 as seed ortholog is 100%.

Group of orthologs #517. Best score 317 bits
Score difference with first non-orthologous sequence - C.intestinalis:317 C.militaris:317

F6SCN2              	100.00%		G3JIQ4              	100.00%
Bootstrap support for F6SCN2 as seed ortholog is 100%.
Bootstrap support for G3JIQ4 as seed ortholog is 100%.

Group of orthologs #518. Best score 316 bits
Score difference with first non-orthologous sequence - C.intestinalis:316 C.militaris:154

F6S902              	100.00%		G3J921              	100.00%
Bootstrap support for F6S902 as seed ortholog is 100%.
Bootstrap support for G3J921 as seed ortholog is 99%.

Group of orthologs #519. Best score 316 bits
Score difference with first non-orthologous sequence - C.intestinalis:316 C.militaris:316

F6UFF5              	100.00%		G3J5I8              	100.00%
Bootstrap support for F6UFF5 as seed ortholog is 100%.
Bootstrap support for G3J5I8 as seed ortholog is 100%.

Group of orthologs #520. Best score 316 bits
Score difference with first non-orthologous sequence - C.intestinalis:316 C.militaris:316

F6S1D4              	100.00%		G3JEF8              	100.00%
Bootstrap support for F6S1D4 as seed ortholog is 100%.
Bootstrap support for G3JEF8 as seed ortholog is 100%.

Group of orthologs #521. Best score 315 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:315

H2XQ03              	100.00%		G3JRD7              	100.00%
Bootstrap support for H2XQ03 as seed ortholog is 99%.
Bootstrap support for G3JRD7 as seed ortholog is 100%.

Group of orthologs #522. Best score 314 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 C.militaris:40

F6PKL5              	100.00%		G3JKF6              	100.00%
Bootstrap support for F6PKL5 as seed ortholog is 99%.
Bootstrap support for G3JKF6 as seed ortholog is 66%.
Alternative seed ortholog is G3JUP0 (40 bits away from this cluster)

Group of orthologs #523. Best score 314 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 C.militaris:170

F6XTY4              	100.00%		G3JG61              	100.00%
Bootstrap support for F6XTY4 as seed ortholog is 99%.
Bootstrap support for G3JG61 as seed ortholog is 99%.

Group of orthologs #524. Best score 314 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 C.militaris:314

F6WIL6              	100.00%		G3JMZ6              	100.00%
Bootstrap support for F6WIL6 as seed ortholog is 99%.
Bootstrap support for G3JMZ6 as seed ortholog is 100%.

Group of orthologs #525. Best score 313 bits
Score difference with first non-orthologous sequence - C.intestinalis:313 C.militaris:313

F6YA95              	100.00%		G3J4G2              	100.00%
Bootstrap support for F6YA95 as seed ortholog is 100%.
Bootstrap support for G3J4G2 as seed ortholog is 100%.

Group of orthologs #526. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:311 C.militaris:84

F7BEM7              	100.00%		G3JK01              	100.00%
F6WKT2              	47.71%		G3JP59              	9.17%
F6ZAX9              	26.61%		
H2XN25              	23.90%		
Bootstrap support for F7BEM7 as seed ortholog is 100%.
Bootstrap support for G3JK01 as seed ortholog is 78%.

Group of orthologs #527. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:311

F6S9Y0              	100.00%		G3JQ81              	100.00%
F6W2G3              	7.73%		
Bootstrap support for F6S9Y0 as seed ortholog is 93%.
Bootstrap support for G3JQ81 as seed ortholog is 100%.

Group of orthologs #528. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 C.militaris:202

F7B040              	100.00%		G3J5H8              	100.00%
Bootstrap support for F7B040 as seed ortholog is 100%.
Bootstrap support for G3J5H8 as seed ortholog is 100%.

Group of orthologs #529. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 C.militaris:188

F6YC60              	100.00%		G3JH49              	100.00%
Bootstrap support for F6YC60 as seed ortholog is 83%.
Bootstrap support for G3JH49 as seed ortholog is 100%.

Group of orthologs #530. Best score 311 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 C.militaris:311

H2Y2C6              	100.00%		G3J962              	100.00%
Bootstrap support for H2Y2C6 as seed ortholog is 68%.
Alternative seed ortholog is F6W8D0 (1 bits away from this cluster)
Bootstrap support for G3J962 as seed ortholog is 100%.

Group of orthologs #531. Best score 310 bits
Score difference with first non-orthologous sequence - C.intestinalis:310 C.militaris:310

H2XPV7              	100.00%		G3JBL5              	100.00%
Bootstrap support for H2XPV7 as seed ortholog is 100%.
Bootstrap support for G3JBL5 as seed ortholog is 100%.

Group of orthologs #532. Best score 309 bits
Score difference with first non-orthologous sequence - C.intestinalis:309 C.militaris:309

F6Q601              	100.00%		G3JA42              	100.00%
Bootstrap support for F6Q601 as seed ortholog is 100%.
Bootstrap support for G3JA42 as seed ortholog is 100%.

Group of orthologs #533. Best score 309 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 C.militaris:238

F6WWK0              	100.00%		G3JIZ2              	100.00%
Bootstrap support for F6WWK0 as seed ortholog is 100%.
Bootstrap support for G3JIZ2 as seed ortholog is 100%.

Group of orthologs #534. Best score 309 bits
Score difference with first non-orthologous sequence - C.intestinalis:309 C.militaris:309

F7AMR5              	100.00%		G3JI72              	100.00%
Bootstrap support for F7AMR5 as seed ortholog is 100%.
Bootstrap support for G3JI72 as seed ortholog is 100%.

Group of orthologs #535. Best score 309 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.militaris:204

F6Z9I2              	100.00%		G3JNK4              	100.00%
Bootstrap support for F6Z9I2 as seed ortholog is 100%.
Bootstrap support for G3JNK4 as seed ortholog is 100%.

Group of orthologs #536. Best score 309 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 C.militaris:309

F7BML6              	100.00%		G3JKD1              	100.00%
Bootstrap support for F7BML6 as seed ortholog is 99%.
Bootstrap support for G3JKD1 as seed ortholog is 100%.

Group of orthologs #537. Best score 309 bits
Score difference with first non-orthologous sequence - C.intestinalis:309 C.militaris:309

Q1RLD5              	100.00%		G3JMR5              	100.00%
Bootstrap support for Q1RLD5 as seed ortholog is 100%.
Bootstrap support for G3JMR5 as seed ortholog is 100%.

Group of orthologs #538. Best score 308 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 C.militaris:153

F6SGJ4              	100.00%		G3JNA2              	100.00%
Bootstrap support for F6SGJ4 as seed ortholog is 99%.
Bootstrap support for G3JNA2 as seed ortholog is 99%.

Group of orthologs #539. Best score 308 bits
Score difference with first non-orthologous sequence - C.intestinalis:308 C.militaris:60

F6XUX1              	100.00%		G3JGP7              	100.00%
Bootstrap support for F6XUX1 as seed ortholog is 100%.
Bootstrap support for G3JGP7 as seed ortholog is 93%.

Group of orthologs #540. Best score 308 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.militaris:75

H2XL87              	100.00%		G3J9W6              	100.00%
Bootstrap support for H2XL87 as seed ortholog is 100%.
Bootstrap support for G3J9W6 as seed ortholog is 99%.

Group of orthologs #541. Best score 307 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:106

H2XXD3              	100.00%		G3JAB2              	100.00%
F6PH07              	16.28%		
Bootstrap support for H2XXD3 as seed ortholog is 99%.
Bootstrap support for G3JAB2 as seed ortholog is 99%.

Group of orthologs #542. Best score 307 bits
Score difference with first non-orthologous sequence - C.intestinalis:307 C.militaris:307

F6RXZ8              	100.00%		G3JPP1              	100.00%
Bootstrap support for F6RXZ8 as seed ortholog is 100%.
Bootstrap support for G3JPP1 as seed ortholog is 100%.

Group of orthologs #543. Best score 307 bits
Score difference with first non-orthologous sequence - C.intestinalis:307 C.militaris:307

H2XKE2              	100.00%		G3J3N0              	100.00%
Bootstrap support for H2XKE2 as seed ortholog is 100%.
Bootstrap support for G3J3N0 as seed ortholog is 100%.

Group of orthologs #544. Best score 306 bits
Score difference with first non-orthologous sequence - C.intestinalis:306 C.militaris:306

H2XR08              	100.00%		G3J6V3              	100.00%
Bootstrap support for H2XR08 as seed ortholog is 100%.
Bootstrap support for G3J6V3 as seed ortholog is 100%.

Group of orthologs #545. Best score 306 bits
Score difference with first non-orthologous sequence - C.intestinalis:16 C.militaris:198

H2Y040              	100.00%		G3JHM7              	100.00%
Bootstrap support for H2Y040 as seed ortholog is 81%.
Bootstrap support for G3JHM7 as seed ortholog is 100%.

Group of orthologs #546. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 C.militaris:305

F6SKF5              	100.00%		G3JN77              	100.00%
F6X5E1              	9.34%		
F6Q8W5              	8.09%		
F6QCF9              	6.69%		
F7AUQ0              	5.68%		
Bootstrap support for F6SKF5 as seed ortholog is 100%.
Bootstrap support for G3JN77 as seed ortholog is 100%.

Group of orthologs #547. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:305

F6WL19              	100.00%		G3JKE4              	100.00%
F6TNW3              	29.23%		G3JLG4              	100.00%
Bootstrap support for F6WL19 as seed ortholog is 99%.
Bootstrap support for G3JKE4 as seed ortholog is 100%.
Bootstrap support for G3JLG4 as seed ortholog is 100%.

Group of orthologs #548. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 C.militaris:305

F6Y7E9              	100.00%		G3J5Z9              	100.00%
Bootstrap support for F6Y7E9 as seed ortholog is 100%.
Bootstrap support for G3J5Z9 as seed ortholog is 100%.

Group of orthologs #549. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 C.militaris:305

F6YM02              	100.00%		G3JE10              	100.00%
Bootstrap support for F6YM02 as seed ortholog is 100%.
Bootstrap support for G3JE10 as seed ortholog is 100%.

Group of orthologs #550. Best score 305 bits
Score difference with first non-orthologous sequence - C.intestinalis:305 C.militaris:195

F6WRC9              	100.00%		G3JSE4              	100.00%
Bootstrap support for F6WRC9 as seed ortholog is 100%.
Bootstrap support for G3JSE4 as seed ortholog is 99%.

Group of orthologs #551. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 C.militaris:153

H2Y0H5              	100.00%		G3JGS6              	100.00%
F6V8V5              	36.08%		
Bootstrap support for H2Y0H5 as seed ortholog is 100%.
Bootstrap support for G3JGS6 as seed ortholog is 99%.

Group of orthologs #552. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.militaris:104

F6PN41              	100.00%		G3JJU0              	100.00%
Bootstrap support for F6PN41 as seed ortholog is 100%.
Bootstrap support for G3JJU0 as seed ortholog is 99%.

Group of orthologs #553. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 C.militaris:304

F6PW34              	100.00%		G3JKV6              	100.00%
Bootstrap support for F6PW34 as seed ortholog is 100%.
Bootstrap support for G3JKV6 as seed ortholog is 100%.

Group of orthologs #554. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.militaris:304

F6W318              	100.00%		G3J9X8              	100.00%
Bootstrap support for F6W318 as seed ortholog is 100%.
Bootstrap support for G3J9X8 as seed ortholog is 100%.

Group of orthologs #555. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:73

F7AQE7              	100.00%		G3J2M6              	100.00%
Bootstrap support for F7AQE7 as seed ortholog is 97%.
Bootstrap support for G3J2M6 as seed ortholog is 97%.

Group of orthologs #556. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.militaris:304

F6YM78              	100.00%		G3JDR8              	100.00%
Bootstrap support for F6YM78 as seed ortholog is 100%.
Bootstrap support for G3JDR8 as seed ortholog is 100%.

Group of orthologs #557. Best score 304 bits
Score difference with first non-orthologous sequence - C.intestinalis:304 C.militaris:304

H2XPG3              	100.00%		G3J8A6              	100.00%
Bootstrap support for H2XPG3 as seed ortholog is 100%.
Bootstrap support for G3J8A6 as seed ortholog is 100%.

Group of orthologs #558. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:302 C.militaris:302

F6TJB5              	100.00%		G3JEK2              	100.00%
Bootstrap support for F6TJB5 as seed ortholog is 100%.
Bootstrap support for G3JEK2 as seed ortholog is 100%.

Group of orthologs #559. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:153

F7A0P0              	100.00%		G3JAU0              	100.00%
Bootstrap support for F7A0P0 as seed ortholog is 99%.
Bootstrap support for G3JAU0 as seed ortholog is 100%.

Group of orthologs #560. Best score 302 bits
Score difference with first non-orthologous sequence - C.intestinalis:302 C.militaris:302

H2XV68              	100.00%		G3J9I4              	100.00%
Bootstrap support for H2XV68 as seed ortholog is 100%.
Bootstrap support for G3J9I4 as seed ortholog is 100%.

Group of orthologs #561. Best score 301 bits
Score difference with first non-orthologous sequence - C.intestinalis:187 C.militaris:301

F6ZQY6              	100.00%		G3JPC5              	100.00%
H2XXR3              	9.92%		
Bootstrap support for F6ZQY6 as seed ortholog is 99%.
Bootstrap support for G3JPC5 as seed ortholog is 100%.

Group of orthologs #562. Best score 300 bits
Score difference with first non-orthologous sequence - C.intestinalis:300 C.militaris:300

F6R589              	100.00%		G3JHY4              	100.00%
Bootstrap support for F6R589 as seed ortholog is 100%.
Bootstrap support for G3JHY4 as seed ortholog is 100%.

Group of orthologs #563. Best score 300 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.militaris:117

F6S0X0              	100.00%		G3JJC6              	100.00%
Bootstrap support for F6S0X0 as seed ortholog is 99%.
Bootstrap support for G3JJC6 as seed ortholog is 98%.

Group of orthologs #564. Best score 300 bits
Score difference with first non-orthologous sequence - C.intestinalis:300 C.militaris:300

F6SQQ1              	100.00%		G3JPQ3              	100.00%
Bootstrap support for F6SQQ1 as seed ortholog is 100%.
Bootstrap support for G3JPQ3 as seed ortholog is 100%.

Group of orthologs #565. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 C.militaris:299

F6QE47              	100.00%		G3JHX1              	100.00%
Bootstrap support for F6QE47 as seed ortholog is 100%.
Bootstrap support for G3JHX1 as seed ortholog is 100%.

Group of orthologs #566. Best score 299 bits
Score difference with first non-orthologous sequence - C.intestinalis:299 C.militaris:40

F7BAT7              	100.00%		G3JV25              	100.00%
Bootstrap support for F7BAT7 as seed ortholog is 100%.
Bootstrap support for G3JV25 as seed ortholog is 95%.

Group of orthologs #567. Best score 298 bits
Score difference with first non-orthologous sequence - C.intestinalis:298 C.militaris:298

F6YQR4              	100.00%		G3JQ95              	100.00%
Bootstrap support for F6YQR4 as seed ortholog is 100%.
Bootstrap support for G3JQ95 as seed ortholog is 100%.

Group of orthologs #568. Best score 297 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 C.militaris:133

F6VNW9              	100.00%		G3JNU2              	100.00%
Bootstrap support for F6VNW9 as seed ortholog is 63%.
Alternative seed ortholog is F6ZBI9 (15 bits away from this cluster)
Bootstrap support for G3JNU2 as seed ortholog is 99%.

Group of orthologs #569. Best score 297 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:149

F6XCQ7              	100.00%		G3JNA8              	100.00%
Bootstrap support for F6XCQ7 as seed ortholog is 100%.
Bootstrap support for G3JNA8 as seed ortholog is 100%.

Group of orthologs #570. Best score 296 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:231

F6SZ54              	100.00%		G3J8Z7              	100.00%
Bootstrap support for F6SZ54 as seed ortholog is 99%.
Bootstrap support for G3J8Z7 as seed ortholog is 100%.

Group of orthologs #571. Best score 296 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:296

F6SKI3              	100.00%		G3JQ44              	100.00%
Bootstrap support for F6SKI3 as seed ortholog is 98%.
Bootstrap support for G3JQ44 as seed ortholog is 100%.

Group of orthologs #572. Best score 296 bits
Score difference with first non-orthologous sequence - C.intestinalis:296 C.militaris:296

H2XPN9              	100.00%		G3JN43              	100.00%
Bootstrap support for H2XPN9 as seed ortholog is 100%.
Bootstrap support for G3JN43 as seed ortholog is 100%.

Group of orthologs #573. Best score 295 bits
Score difference with first non-orthologous sequence - C.intestinalis:295 C.militaris:295

H2Y359              	100.00%		G3JQB0              	100.00%
                    	       		G3JT24              	35.70%
Bootstrap support for H2Y359 as seed ortholog is 100%.
Bootstrap support for G3JQB0 as seed ortholog is 100%.

Group of orthologs #574. Best score 294 bits
Score difference with first non-orthologous sequence - C.intestinalis:294 C.militaris:294

F6TPA2              	100.00%		G3JP96              	100.00%
Bootstrap support for F6TPA2 as seed ortholog is 100%.
Bootstrap support for G3JP96 as seed ortholog is 100%.

Group of orthologs #575. Best score 293 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 C.militaris:236

F6XUD5              	100.00%		G3J3J9              	100.00%
F6V9F0              	36.06%		
Bootstrap support for F6XUD5 as seed ortholog is 99%.
Bootstrap support for G3J3J9 as seed ortholog is 100%.

Group of orthologs #576. Best score 293 bits
Score difference with first non-orthologous sequence - C.intestinalis:293 C.militaris:293

F6TEZ1              	100.00%		G3JTP5              	100.00%
Bootstrap support for F6TEZ1 as seed ortholog is 100%.
Bootstrap support for G3JTP5 as seed ortholog is 100%.

Group of orthologs #577. Best score 291 bits
Score difference with first non-orthologous sequence - C.intestinalis:291 C.militaris:141

F6Z491              	100.00%		G3JEF7              	100.00%
Bootstrap support for F6Z491 as seed ortholog is 100%.
Bootstrap support for G3JEF7 as seed ortholog is 100%.

Group of orthologs #578. Best score 290 bits
Score difference with first non-orthologous sequence - C.intestinalis:290 C.militaris:134

F6T0J5              	100.00%		G3J5B6              	100.00%
Bootstrap support for F6T0J5 as seed ortholog is 100%.
Bootstrap support for G3J5B6 as seed ortholog is 100%.

Group of orthologs #579. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:289 C.militaris:289

F6QTS6              	100.00%		G3J971              	100.00%
                    	       		G3JDV4              	100.00%
Bootstrap support for F6QTS6 as seed ortholog is 100%.
Bootstrap support for G3J971 as seed ortholog is 100%.
Bootstrap support for G3JDV4 as seed ortholog is 100%.

Group of orthologs #580. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:178

F7A9Y8              	100.00%		G3JBT7              	100.00%
                    	       		G3JND0              	22.48%
Bootstrap support for F7A9Y8 as seed ortholog is 100%.
Bootstrap support for G3JBT7 as seed ortholog is 99%.

Group of orthologs #581. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:289 C.militaris:289

F6WAY8              	100.00%		G3J6W9              	100.00%
Bootstrap support for F6WAY8 as seed ortholog is 100%.
Bootstrap support for G3J6W9 as seed ortholog is 100%.

Group of orthologs #582. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:158

F6UX10              	100.00%		G3JA92              	100.00%
Bootstrap support for F6UX10 as seed ortholog is 99%.
Bootstrap support for G3JA92 as seed ortholog is 99%.

Group of orthologs #583. Best score 289 bits
Score difference with first non-orthologous sequence - C.intestinalis:289 C.militaris:289

H2XVD5              	100.00%		G3J8P6              	100.00%
Bootstrap support for H2XVD5 as seed ortholog is 100%.
Bootstrap support for G3J8P6 as seed ortholog is 100%.

Group of orthologs #584. Best score 288 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 C.militaris:288

F6TX35              	100.00%		G3JDQ0              	100.00%
Bootstrap support for F6TX35 as seed ortholog is 100%.
Bootstrap support for G3JDQ0 as seed ortholog is 100%.

Group of orthologs #585. Best score 288 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 C.militaris:288

F6QY24              	100.00%		G3JPP3              	100.00%
Bootstrap support for F6QY24 as seed ortholog is 100%.
Bootstrap support for G3JPP3 as seed ortholog is 100%.

Group of orthologs #586. Best score 288 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 C.militaris:189

H2XZV8              	100.00%		G3JI90              	100.00%
Bootstrap support for H2XZV8 as seed ortholog is 100%.
Bootstrap support for G3JI90 as seed ortholog is 100%.

Group of orthologs #587. Best score 288 bits
Score difference with first non-orthologous sequence - C.intestinalis:288 C.militaris:288

H2XVQ9              	100.00%		G3JMR6              	100.00%
Bootstrap support for H2XVQ9 as seed ortholog is 100%.
Bootstrap support for G3JMR6 as seed ortholog is 100%.

Group of orthologs #588. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:287

H2XNI1              	100.00%		G3JCP7              	100.00%
F6UEZ5              	15.81%		
Bootstrap support for H2XNI1 as seed ortholog is 87%.
Bootstrap support for G3JCP7 as seed ortholog is 100%.

Group of orthologs #589. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:143

F6R3W0              	100.00%		G3J468              	100.00%
Bootstrap support for F6R3W0 as seed ortholog is 100%.
Bootstrap support for G3J468 as seed ortholog is 100%.

Group of orthologs #590. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.militaris:149

F6U1L2              	100.00%		G3J6B6              	100.00%
Bootstrap support for F6U1L2 as seed ortholog is 97%.
Bootstrap support for G3J6B6 as seed ortholog is 99%.

Group of orthologs #591. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:287 C.militaris:52

F6YK55              	100.00%		G3J4C6              	100.00%
Bootstrap support for F6YK55 as seed ortholog is 100%.
Bootstrap support for G3J4C6 as seed ortholog is 77%.

Group of orthologs #592. Best score 287 bits
Score difference with first non-orthologous sequence - C.intestinalis:287 C.militaris:287

H2Y0A5              	100.00%		G3JEW1              	100.00%
Bootstrap support for H2Y0A5 as seed ortholog is 100%.
Bootstrap support for G3JEW1 as seed ortholog is 100%.

Group of orthologs #593. Best score 286 bits
Score difference with first non-orthologous sequence - C.intestinalis:286 C.militaris:286

F6XDT3              	100.00%		G3JBD8              	100.00%
Bootstrap support for F6XDT3 as seed ortholog is 100%.
Bootstrap support for G3JBD8 as seed ortholog is 100%.

Group of orthologs #594. Best score 286 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.militaris:171

F6XT60              	100.00%		G3JQJ4              	100.00%
Bootstrap support for F6XT60 as seed ortholog is 100%.
Bootstrap support for G3JQJ4 as seed ortholog is 100%.

Group of orthologs #595. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 C.militaris:285

Q4H2R2              	100.00%		G3JH61              	100.00%
F6VQ10              	82.82%		
Bootstrap support for Q4H2R2 as seed ortholog is 100%.
Bootstrap support for G3JH61 as seed ortholog is 100%.

Group of orthologs #596. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:190

F6TDZ5              	100.00%		G3JDT5              	100.00%
Bootstrap support for F6TDZ5 as seed ortholog is 99%.
Bootstrap support for G3JDT5 as seed ortholog is 99%.

Group of orthologs #597. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:285

F6XMP8              	100.00%		G3JGA7              	100.00%
Bootstrap support for F6XMP8 as seed ortholog is 99%.
Bootstrap support for G3JGA7 as seed ortholog is 100%.

Group of orthologs #598. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 C.militaris:285

H2XYT3              	100.00%		G3J3E9              	100.00%
Bootstrap support for H2XYT3 as seed ortholog is 100%.
Bootstrap support for G3J3E9 as seed ortholog is 100%.

Group of orthologs #599. Best score 285 bits
Score difference with first non-orthologous sequence - C.intestinalis:285 C.militaris:285

F7B5B2              	100.00%		G3JV06              	100.00%
Bootstrap support for F7B5B2 as seed ortholog is 100%.
Bootstrap support for G3JV06 as seed ortholog is 100%.

Group of orthologs #600. Best score 284 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 C.militaris:284

H2XZY0              	100.00%		G3J3Z3              	100.00%
Q1RPX1              	8.62%		
Bootstrap support for H2XZY0 as seed ortholog is 99%.
Bootstrap support for G3J3Z3 as seed ortholog is 100%.

Group of orthologs #601. Best score 284 bits
Score difference with first non-orthologous sequence - C.intestinalis:284 C.militaris:284

F6TQG1              	100.00%		G3JGM5              	100.00%
Bootstrap support for F6TQG1 as seed ortholog is 100%.
Bootstrap support for G3JGM5 as seed ortholog is 100%.

Group of orthologs #602. Best score 284 bits
Score difference with first non-orthologous sequence - C.intestinalis:284 C.militaris:284

F6Z2W9              	100.00%		G3J4R3              	100.00%
Bootstrap support for F6Z2W9 as seed ortholog is 100%.
Bootstrap support for G3J4R3 as seed ortholog is 100%.

Group of orthologs #603. Best score 284 bits
Score difference with first non-orthologous sequence - C.intestinalis:284 C.militaris:284

F6TAR1              	100.00%		G3JIT9              	100.00%
Bootstrap support for F6TAR1 as seed ortholog is 100%.
Bootstrap support for G3JIT9 as seed ortholog is 100%.

Group of orthologs #604. Best score 284 bits
Score difference with first non-orthologous sequence - C.intestinalis:284 C.militaris:284

F6TGX2              	100.00%		G3JU64              	100.00%
Bootstrap support for F6TGX2 as seed ortholog is 100%.
Bootstrap support for G3JU64 as seed ortholog is 100%.

Group of orthologs #605. Best score 283 bits
Score difference with first non-orthologous sequence - C.intestinalis:283 C.militaris:283

F6SZT6              	100.00%		G3JMH5              	100.00%
F6V5Q8              	17.34%		G3JT97              	7.28%
F6X923              	8.33%		
H2XYZ3              	7.80%		
Bootstrap support for F6SZT6 as seed ortholog is 100%.
Bootstrap support for G3JMH5 as seed ortholog is 100%.

Group of orthologs #606. Best score 283 bits
Score difference with first non-orthologous sequence - C.intestinalis:283 C.militaris:283

H2XM50              	100.00%		G3JUX0              	100.00%
F6R614              	36.84%		
Bootstrap support for H2XM50 as seed ortholog is 100%.
Bootstrap support for G3JUX0 as seed ortholog is 100%.

Group of orthologs #607. Best score 283 bits
Score difference with first non-orthologous sequence - C.intestinalis:283 C.militaris:283

F6PXA9              	100.00%		G3JKF0              	100.00%
Bootstrap support for F6PXA9 as seed ortholog is 100%.
Bootstrap support for G3JKF0 as seed ortholog is 100%.

Group of orthologs #608. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:282

F6XPZ4              	100.00%		G3JGA2              	100.00%
Bootstrap support for F6XPZ4 as seed ortholog is 100%.
Bootstrap support for G3JGA2 as seed ortholog is 100%.

Group of orthologs #609. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:282 C.militaris:168

F6XT42              	100.00%		G3JPR5              	100.00%
Bootstrap support for F6XT42 as seed ortholog is 100%.
Bootstrap support for G3JPR5 as seed ortholog is 99%.

Group of orthologs #610. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:282 C.militaris:282

F6XWY9              	100.00%		G3JQ18              	100.00%
Bootstrap support for F6XWY9 as seed ortholog is 100%.
Bootstrap support for G3JQ18 as seed ortholog is 100%.

Group of orthologs #611. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:282 C.militaris:282

H2XSN3              	100.00%		G3JI78              	100.00%
Bootstrap support for H2XSN3 as seed ortholog is 100%.
Bootstrap support for G3JI78 as seed ortholog is 100%.

Group of orthologs #612. Best score 282 bits
Score difference with first non-orthologous sequence - C.intestinalis:282 C.militaris:282

H2XTB0              	100.00%		G3JRC8              	100.00%
Bootstrap support for H2XTB0 as seed ortholog is 100%.
Bootstrap support for G3JRC8 as seed ortholog is 100%.

Group of orthologs #613. Best score 281 bits
Score difference with first non-orthologous sequence - C.intestinalis:281 C.militaris:281

F6ZAD3              	100.00%		G3J4R8              	100.00%
Bootstrap support for F6ZAD3 as seed ortholog is 100%.
Bootstrap support for G3J4R8 as seed ortholog is 100%.

Group of orthologs #614. Best score 281 bits
Score difference with first non-orthologous sequence - C.intestinalis:281 C.militaris:281

F6ZCS4              	100.00%		G3J4L3              	100.00%
Bootstrap support for F6ZCS4 as seed ortholog is 100%.
Bootstrap support for G3J4L3 as seed ortholog is 100%.

Group of orthologs #615. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 C.militaris:280

F6ZFS8              	100.00%		G3JSN0              	100.00%
F6UR25              	20.06%		G3JRT7              	32.23%
                    	       		G3J5P5              	8.57%
Bootstrap support for F6ZFS8 as seed ortholog is 100%.
Bootstrap support for G3JSN0 as seed ortholog is 100%.

Group of orthologs #616. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 C.militaris:172

F6RID7              	100.00%		G3J6I7              	100.00%
Bootstrap support for F6RID7 as seed ortholog is 100%.
Bootstrap support for G3J6I7 as seed ortholog is 100%.

Group of orthologs #617. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 C.militaris:280

F6YNG6              	100.00%		G3J2K8              	100.00%
Bootstrap support for F6YNG6 as seed ortholog is 100%.
Bootstrap support for G3J2K8 as seed ortholog is 100%.

Group of orthologs #618. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 C.militaris:280

F6SHZ7              	100.00%		G3JLC5              	100.00%
Bootstrap support for F6SHZ7 as seed ortholog is 100%.
Bootstrap support for G3JLC5 as seed ortholog is 100%.

Group of orthologs #619. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 C.militaris:225

F7AUM2              	100.00%		G3J3B1              	100.00%
Bootstrap support for F7AUM2 as seed ortholog is 87%.
Bootstrap support for G3J3B1 as seed ortholog is 100%.

Group of orthologs #620. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 C.militaris:192

F6ZKW1              	100.00%		G3JJ86              	100.00%
Bootstrap support for F6ZKW1 as seed ortholog is 100%.
Bootstrap support for G3JJ86 as seed ortholog is 100%.

Group of orthologs #621. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 C.militaris:280

H2Y0R2              	100.00%		G3J311              	100.00%
Bootstrap support for H2Y0R2 as seed ortholog is 100%.
Bootstrap support for G3J311 as seed ortholog is 100%.

Group of orthologs #622. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:280 C.militaris:280

F7BLL7              	100.00%		G3JND4              	100.00%
Bootstrap support for F7BLL7 as seed ortholog is 100%.
Bootstrap support for G3JND4 as seed ortholog is 100%.

Group of orthologs #623. Best score 280 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 C.militaris:280

H2XKK7              	100.00%		G3JNS5              	100.00%
Bootstrap support for H2XKK7 as seed ortholog is 76%.
Bootstrap support for G3JNS5 as seed ortholog is 100%.

Group of orthologs #624. Best score 279 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 C.militaris:143

F6R107              	100.00%		G3J989              	100.00%
Bootstrap support for F6R107 as seed ortholog is 100%.
Bootstrap support for G3J989 as seed ortholog is 99%.

Group of orthologs #625. Best score 279 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 C.militaris:279

F6RC25              	100.00%		G3J999              	100.00%
Bootstrap support for F6RC25 as seed ortholog is 100%.
Bootstrap support for G3J999 as seed ortholog is 100%.

Group of orthologs #626. Best score 279 bits
Score difference with first non-orthologous sequence - C.intestinalis:279 C.militaris:279

H2XRS3              	100.00%		G3JKF9              	100.00%
Bootstrap support for H2XRS3 as seed ortholog is 100%.
Bootstrap support for G3JKF9 as seed ortholog is 100%.

Group of orthologs #627. Best score 278 bits
Score difference with first non-orthologous sequence - C.intestinalis:195 C.militaris:204

H2Y2K5              	100.00%		G3JI64              	100.00%
F6VXL3              	37.96%		
Bootstrap support for H2Y2K5 as seed ortholog is 100%.
Bootstrap support for G3JI64 as seed ortholog is 100%.

Group of orthologs #628. Best score 278 bits
Score difference with first non-orthologous sequence - C.intestinalis:278 C.militaris:278

F6Q8V8              	100.00%		G3J301              	100.00%
Bootstrap support for F6Q8V8 as seed ortholog is 100%.
Bootstrap support for G3J301 as seed ortholog is 100%.

Group of orthologs #629. Best score 278 bits
Score difference with first non-orthologous sequence - C.intestinalis:278 C.militaris:278

F6UKS5              	100.00%		G3J2Z9              	100.00%
Bootstrap support for F6UKS5 as seed ortholog is 100%.
Bootstrap support for G3J2Z9 as seed ortholog is 100%.

Group of orthologs #630. Best score 278 bits
Score difference with first non-orthologous sequence - C.intestinalis:278 C.militaris:278

F6Q512              	100.00%		G3JHJ3              	100.00%
Bootstrap support for F6Q512 as seed ortholog is 100%.
Bootstrap support for G3JHJ3 as seed ortholog is 100%.

Group of orthologs #631. Best score 278 bits
Score difference with first non-orthologous sequence - C.intestinalis:278 C.militaris:278

F6UET6              	100.00%		G3JC02              	100.00%
Bootstrap support for F6UET6 as seed ortholog is 100%.
Bootstrap support for G3JC02 as seed ortholog is 100%.

Group of orthologs #632. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:41

F6QL57              	100.00%		G3JIC5              	100.00%
F6UFU1              	49.55%		
H2Y3M9              	21.79%		
F6UGQ7              	11.67%		
H2XXM0              	5.32%		
Bootstrap support for F6QL57 as seed ortholog is 98%.
Bootstrap support for G3JIC5 as seed ortholog is 78%.

Group of orthologs #633. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:5 C.militaris:277

F6WYW5              	100.00%		G3JLF8              	100.00%
F6QWS2              	10.28%		
Bootstrap support for F6WYW5 as seed ortholog is 56%.
Alternative seed ortholog is F6RBW8 (5 bits away from this cluster)
Bootstrap support for G3JLF8 as seed ortholog is 100%.

Group of orthologs #634. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:277 C.militaris:277

F6PRZ9              	100.00%		G3JJP0              	100.00%
Bootstrap support for F6PRZ9 as seed ortholog is 100%.
Bootstrap support for G3JJP0 as seed ortholog is 100%.

Group of orthologs #635. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:277 C.militaris:277

F6U9X5              	100.00%		G3JF45              	100.00%
Bootstrap support for F6U9X5 as seed ortholog is 100%.
Bootstrap support for G3JF45 as seed ortholog is 100%.

Group of orthologs #636. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:277 C.militaris:277

F7ALR4              	100.00%		G3J325              	100.00%
Bootstrap support for F7ALR4 as seed ortholog is 100%.
Bootstrap support for G3J325 as seed ortholog is 100%.

Group of orthologs #637. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:71

H2XXR6              	100.00%		G3J8X6              	100.00%
Bootstrap support for H2XXR6 as seed ortholog is 99%.
Bootstrap support for G3J8X6 as seed ortholog is 99%.

Group of orthologs #638. Best score 277 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 C.militaris:277

Q1RL34              	100.00%		G3JIP3              	100.00%
Bootstrap support for Q1RL34 as seed ortholog is 88%.
Bootstrap support for G3JIP3 as seed ortholog is 100%.

Group of orthologs #639. Best score 276 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 C.militaris:276

H2XLN7              	100.00%		G3J9G3              	100.00%
                    	       		G3J684              	10.22%
                    	       		G3JT63              	7.43%
Bootstrap support for H2XLN7 as seed ortholog is 100%.
Bootstrap support for G3J9G3 as seed ortholog is 100%.

Group of orthologs #640. Best score 276 bits
Score difference with first non-orthologous sequence - C.intestinalis:276 C.militaris:276

F6SZY0              	100.00%		G3JGQ4              	100.00%
Bootstrap support for F6SZY0 as seed ortholog is 100%.
Bootstrap support for G3JGQ4 as seed ortholog is 100%.

Group of orthologs #641. Best score 276 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 C.militaris:162

F6W7N8              	100.00%		G3JQA2              	100.00%
Bootstrap support for F6W7N8 as seed ortholog is 99%.
Bootstrap support for G3JQA2 as seed ortholog is 99%.

Group of orthologs #642. Best score 275 bits
Score difference with first non-orthologous sequence - C.intestinalis:275 C.militaris:275

F6XWW8              	100.00%		G3J7J4              	100.00%
Bootstrap support for F6XWW8 as seed ortholog is 100%.
Bootstrap support for G3J7J4 as seed ortholog is 100%.

Group of orthologs #643. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:274 C.militaris:115

F6YHB0              	100.00%		G3J5S5              	100.00%
Bootstrap support for F6YHB0 as seed ortholog is 100%.
Bootstrap support for G3J5S5 as seed ortholog is 98%.

Group of orthologs #644. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:274 C.militaris:274

F6ZU97              	100.00%		G3J3W7              	100.00%
Bootstrap support for F6ZU97 as seed ortholog is 100%.
Bootstrap support for G3J3W7 as seed ortholog is 100%.

Group of orthologs #645. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:274 C.militaris:274

F6WQB5              	100.00%		G3JHU4              	100.00%
Bootstrap support for F6WQB5 as seed ortholog is 100%.
Bootstrap support for G3JHU4 as seed ortholog is 100%.

Group of orthologs #646. Best score 274 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 C.militaris:149

F6Z0V8              	100.00%		G3JJN5              	100.00%
Bootstrap support for F6Z0V8 as seed ortholog is 99%.
Bootstrap support for G3JJN5 as seed ortholog is 99%.

Group of orthologs #647. Best score 273 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:100

F6YP78              	100.00%		G3J8I6              	100.00%
F6WN12              	67.91%		
F6XMJ7              	26.33%		
F6VYA1              	21.73%		
F6YYX0              	20.00%		
F7AGY9              	12.81%		
H2Y1T7              	12.37%		
F6YJ55              	10.65%		
F6WY28              	9.93%		
F6ZSG1              	8.63%		
F6YJ69              	8.35%		
F6WDV1              	6.33%		
Bootstrap support for F6YP78 as seed ortholog is 97%.
Bootstrap support for G3J8I6 as seed ortholog is 98%.

Group of orthologs #648. Best score 273 bits
Score difference with first non-orthologous sequence - C.intestinalis:273 C.militaris:210

F6S360              	100.00%		G3J9G1              	100.00%
Bootstrap support for F6S360 as seed ortholog is 100%.
Bootstrap support for G3J9G1 as seed ortholog is 100%.

Group of orthologs #649. Best score 273 bits
Score difference with first non-orthologous sequence - C.intestinalis:273 C.militaris:273

F6WBA4              	100.00%		G3JDX7              	100.00%
Bootstrap support for F6WBA4 as seed ortholog is 100%.
Bootstrap support for G3JDX7 as seed ortholog is 100%.

Group of orthologs #650. Best score 273 bits
Score difference with first non-orthologous sequence - C.intestinalis:273 C.militaris:273

F6W1A6              	100.00%		G3JQ73              	100.00%
Bootstrap support for F6W1A6 as seed ortholog is 100%.
Bootstrap support for G3JQ73 as seed ortholog is 100%.

Group of orthologs #651. Best score 273 bits
Score difference with first non-orthologous sequence - C.intestinalis:273 C.militaris:273

F7A8M5              	100.00%		G3JGA6              	100.00%
Bootstrap support for F7A8M5 as seed ortholog is 100%.
Bootstrap support for G3JGA6 as seed ortholog is 100%.

Group of orthologs #652. Best score 272 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 C.militaris:47

H2Y2K6              	100.00%		G3JFB2              	100.00%
                    	       		G3JLJ9              	53.21%
Bootstrap support for H2Y2K6 as seed ortholog is 99%.
Bootstrap support for G3JFB2 as seed ortholog is 89%.

Group of orthologs #653. Best score 272 bits
Score difference with first non-orthologous sequence - C.intestinalis:272 C.militaris:272

F6Q5D4              	100.00%		G3JCD3              	100.00%
Bootstrap support for F6Q5D4 as seed ortholog is 100%.
Bootstrap support for G3JCD3 as seed ortholog is 100%.

Group of orthologs #654. Best score 272 bits
Score difference with first non-orthologous sequence - C.intestinalis:272 C.militaris:272

F6WHS8              	100.00%		G3J6N3              	100.00%
Bootstrap support for F6WHS8 as seed ortholog is 100%.
Bootstrap support for G3J6N3 as seed ortholog is 100%.

Group of orthologs #655. Best score 272 bits
Score difference with first non-orthologous sequence - C.intestinalis:272 C.militaris:272

F6WEC9              	100.00%		G3JUA4              	100.00%
Bootstrap support for F6WEC9 as seed ortholog is 100%.
Bootstrap support for G3JUA4 as seed ortholog is 100%.

Group of orthologs #656. Best score 271 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 C.militaris:271

F6TRN8              	100.00%		G3JU33              	100.00%
Bootstrap support for F6TRN8 as seed ortholog is 100%.
Bootstrap support for G3JU33 as seed ortholog is 100%.

Group of orthologs #657. Best score 271 bits
Score difference with first non-orthologous sequence - C.intestinalis:271 C.militaris:271

F6YBW7              	100.00%		G3JTT5              	100.00%
Bootstrap support for F6YBW7 as seed ortholog is 100%.
Bootstrap support for G3JTT5 as seed ortholog is 100%.

Group of orthologs #658. Best score 270 bits
Score difference with first non-orthologous sequence - C.intestinalis:270 C.militaris:270

F6UAX7              	100.00%		G3J8M9              	100.00%
Bootstrap support for F6UAX7 as seed ortholog is 100%.
Bootstrap support for G3J8M9 as seed ortholog is 100%.

Group of orthologs #659. Best score 270 bits
Score difference with first non-orthologous sequence - C.intestinalis:270 C.militaris:270

F6YIY8              	100.00%		G3J6H8              	100.00%
Bootstrap support for F6YIY8 as seed ortholog is 100%.
Bootstrap support for G3J6H8 as seed ortholog is 100%.

Group of orthologs #660. Best score 270 bits
Score difference with first non-orthologous sequence - C.intestinalis:270 C.militaris:270

H2XNV5              	100.00%		G3J5B1              	100.00%
Bootstrap support for H2XNV5 as seed ortholog is 100%.
Bootstrap support for G3J5B1 as seed ortholog is 100%.

Group of orthologs #661. Best score 270 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 C.militaris:66

Q7YT82              	100.00%		G3J727              	100.00%
Bootstrap support for Q7YT82 as seed ortholog is 99%.
Bootstrap support for G3J727 as seed ortholog is 99%.

Group of orthologs #662. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 C.militaris:84

F6PNQ0              	100.00%		G3J7Q9              	100.00%
Q7YT79              	100.00%		
F6PNI9              	33.86%		
Q7YT74              	10.24%		
Bootstrap support for F6PNQ0 as seed ortholog is 92%.
Bootstrap support for Q7YT79 as seed ortholog is 91%.
Bootstrap support for G3J7Q9 as seed ortholog is 99%.

Group of orthologs #663. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:269 C.militaris:182

F6VL61              	100.00%		G3J4I5              	100.00%
F6VKS9              	23.59%		
Bootstrap support for F6VL61 as seed ortholog is 100%.
Bootstrap support for G3J4I5 as seed ortholog is 99%.

Group of orthologs #664. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 C.militaris:269

H2XQB0              	100.00%		G3J698              	100.00%
Bootstrap support for H2XQB0 as seed ortholog is 99%.
Bootstrap support for G3J698 as seed ortholog is 100%.

Group of orthologs #665. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:269 C.militaris:269

F6YH10              	100.00%		G3JTL8              	100.00%
Bootstrap support for F6YH10 as seed ortholog is 100%.
Bootstrap support for G3JTL8 as seed ortholog is 100%.

Group of orthologs #666. Best score 269 bits
Score difference with first non-orthologous sequence - C.intestinalis:269 C.militaris:269

H2Y3Q6              	100.00%		G3JL34              	100.00%
Bootstrap support for H2Y3Q6 as seed ortholog is 100%.
Bootstrap support for G3JL34 as seed ortholog is 100%.

Group of orthologs #667. Best score 268 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 C.militaris:169

F6YD53              	100.00%		G3J6Y6              	100.00%
Bootstrap support for F6YD53 as seed ortholog is 100%.
Bootstrap support for G3J6Y6 as seed ortholog is 100%.

Group of orthologs #668. Best score 268 bits
Score difference with first non-orthologous sequence - C.intestinalis:268 C.militaris:179

F6Y3K6              	100.00%		G3J8K4              	100.00%
Bootstrap support for F6Y3K6 as seed ortholog is 100%.
Bootstrap support for G3J8K4 as seed ortholog is 99%.

Group of orthologs #669. Best score 268 bits
Score difference with first non-orthologous sequence - C.intestinalis:268 C.militaris:126

F6VTZ3              	100.00%		G3JE29              	100.00%
Bootstrap support for F6VTZ3 as seed ortholog is 100%.
Bootstrap support for G3JE29 as seed ortholog is 99%.

Group of orthologs #670. Best score 268 bits
Score difference with first non-orthologous sequence - C.intestinalis:268 C.militaris:268

F6U602              	100.00%		G3JPQ7              	100.00%
Bootstrap support for F6U602 as seed ortholog is 100%.
Bootstrap support for G3JPQ7 as seed ortholog is 100%.

Group of orthologs #671. Best score 267 bits
Score difference with first non-orthologous sequence - C.intestinalis:223 C.militaris:267

F6VUL9              	100.00%		G3J4B1              	100.00%
Bootstrap support for F6VUL9 as seed ortholog is 100%.
Bootstrap support for G3J4B1 as seed ortholog is 100%.

Group of orthologs #672. Best score 267 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 C.militaris:267

F6UPC7              	100.00%		G3JB40              	100.00%
Bootstrap support for F6UPC7 as seed ortholog is 100%.
Bootstrap support for G3JB40 as seed ortholog is 100%.

Group of orthologs #673. Best score 267 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 C.militaris:267

F6ZYI6              	100.00%		G3J409              	100.00%
Bootstrap support for F6ZYI6 as seed ortholog is 100%.
Bootstrap support for G3J409 as seed ortholog is 100%.

Group of orthologs #674. Best score 267 bits
Score difference with first non-orthologous sequence - C.intestinalis:267 C.militaris:108

H2XUE3              	100.00%		G3J719              	100.00%
Bootstrap support for H2XUE3 as seed ortholog is 100%.
Bootstrap support for G3J719 as seed ortholog is 99%.

Group of orthologs #675. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.militaris:265

F6TJL2              	100.00%		G3J2I8              	100.00%
F6TJJ0              	29.42%		
F6TFE5              	23.35%		
Bootstrap support for F6TJL2 as seed ortholog is 100%.
Bootstrap support for G3J2I8 as seed ortholog is 100%.

Group of orthologs #676. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:200

H2XS68              	100.00%		G3J303              	100.00%
H2XK79              	89.43%		
H2XVV3              	25.98%		
Bootstrap support for H2XS68 as seed ortholog is 100%.
Bootstrap support for G3J303 as seed ortholog is 100%.

Group of orthologs #677. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.militaris:45

F6YLI3              	100.00%		G3JJT6              	100.00%
H2XKD1              	21.44%		
H2XUD0              	19.86%		
Bootstrap support for F6YLI3 as seed ortholog is 100%.
Bootstrap support for G3JJT6 as seed ortholog is 83%.

Group of orthologs #678. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.militaris:265

K9J6P5              	100.00%		G3JF99              	100.00%
F7AYD9              	68.91%		
Bootstrap support for K9J6P5 as seed ortholog is 100%.
Bootstrap support for G3JF99 as seed ortholog is 100%.

Group of orthologs #679. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.militaris:193

F6VXM8              	100.00%		G3J4P5              	100.00%
Bootstrap support for F6VXM8 as seed ortholog is 100%.
Bootstrap support for G3J4P5 as seed ortholog is 99%.

Group of orthologs #680. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.militaris:265

F6R8L5              	100.00%		G3JJY3              	100.00%
Bootstrap support for F6R8L5 as seed ortholog is 100%.
Bootstrap support for G3JJY3 as seed ortholog is 100%.

Group of orthologs #681. Best score 265 bits
Score difference with first non-orthologous sequence - C.intestinalis:265 C.militaris:265

F6TSV6              	100.00%		G3JL01              	100.00%
Bootstrap support for F6TSV6 as seed ortholog is 100%.
Bootstrap support for G3JL01 as seed ortholog is 100%.

Group of orthologs #682. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 C.militaris:32

F6U1X0              	100.00%		G3J6V2              	100.00%
Bootstrap support for F6U1X0 as seed ortholog is 100%.
Bootstrap support for G3J6V2 as seed ortholog is 86%.

Group of orthologs #683. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 C.militaris:56

F6UAF0              	100.00%		G3J6N5              	100.00%
Bootstrap support for F6UAF0 as seed ortholog is 83%.
Bootstrap support for G3J6N5 as seed ortholog is 98%.

Group of orthologs #684. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:82

F6UK82              	100.00%		G3JL94              	100.00%
Bootstrap support for F6UK82 as seed ortholog is 98%.
Bootstrap support for G3JL94 as seed ortholog is 98%.

Group of orthologs #685. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 C.militaris:264

F6Z672              	100.00%		G3JTW3              	100.00%
Bootstrap support for F6Z672 as seed ortholog is 100%.
Bootstrap support for G3JTW3 as seed ortholog is 100%.

Group of orthologs #686. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:264 C.militaris:88

H2XY03              	100.00%		G3JHT4              	100.00%
Bootstrap support for H2XY03 as seed ortholog is 100%.
Bootstrap support for G3JHT4 as seed ortholog is 99%.

Group of orthologs #687. Best score 264 bits
Score difference with first non-orthologous sequence - C.intestinalis:19 C.militaris:174

H2Y1B6              	100.00%		G3JV30              	100.00%
Bootstrap support for H2Y1B6 as seed ortholog is 79%.
Bootstrap support for G3JV30 as seed ortholog is 100%.

Group of orthologs #688. Best score 263 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 C.militaris:56

F6QRJ2              	100.00%		G3JLD1              	100.00%
Bootstrap support for F6QRJ2 as seed ortholog is 100%.
Bootstrap support for G3JLD1 as seed ortholog is 95%.

Group of orthologs #689. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.militaris:262

F6SNM2              	100.00%		G3J3T3              	100.00%
Bootstrap support for F6SNM2 as seed ortholog is 100%.
Bootstrap support for G3J3T3 as seed ortholog is 100%.

Group of orthologs #690. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.militaris:262

F6QHP8              	100.00%		G3J9F4              	100.00%
Bootstrap support for F6QHP8 as seed ortholog is 100%.
Bootstrap support for G3J9F4 as seed ortholog is 100%.

Group of orthologs #691. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:262

F6SGI6              	100.00%		G3JH95              	100.00%
Bootstrap support for F6SGI6 as seed ortholog is 99%.
Bootstrap support for G3JH95 as seed ortholog is 100%.

Group of orthologs #692. Best score 262 bits
Score difference with first non-orthologous sequence - C.intestinalis:262 C.militaris:210

F6YLQ9              	100.00%		G3JN44              	100.00%
Bootstrap support for F6YLQ9 as seed ortholog is 100%.
Bootstrap support for G3JN44 as seed ortholog is 100%.

Group of orthologs #693. Best score 261 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 C.militaris:261

F6U222              	100.00%		G3JEP1              	100.00%
Bootstrap support for F6U222 as seed ortholog is 96%.
Bootstrap support for G3JEP1 as seed ortholog is 100%.

Group of orthologs #694. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:31

F6W2S7              	100.00%		G3JJE1              	100.00%
Bootstrap support for F6W2S7 as seed ortholog is 99%.
Bootstrap support for G3JJE1 as seed ortholog is 79%.

Group of orthologs #695. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:260 C.militaris:260

F6ZIP8              	100.00%		G3JCQ0              	100.00%
Bootstrap support for F6ZIP8 as seed ortholog is 100%.
Bootstrap support for G3JCQ0 as seed ortholog is 100%.

Group of orthologs #696. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:260 C.militaris:260

F7A5R9              	100.00%		G3JIG1              	100.00%
Bootstrap support for F7A5R9 as seed ortholog is 100%.
Bootstrap support for G3JIG1 as seed ortholog is 100%.

Group of orthologs #697. Best score 260 bits
Score difference with first non-orthologous sequence - C.intestinalis:260 C.militaris:260

H2XU88              	100.00%		G3JPV9              	100.00%
Bootstrap support for H2XU88 as seed ortholog is 100%.
Bootstrap support for G3JPV9 as seed ortholog is 100%.

Group of orthologs #698. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 C.militaris:259

F6Q2U2              	100.00%		G3JKZ2              	100.00%
Bootstrap support for F6Q2U2 as seed ortholog is 100%.
Bootstrap support for G3JKZ2 as seed ortholog is 100%.

Group of orthologs #699. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 C.militaris:259

F6YKS6              	100.00%		G3JPL9              	100.00%
Bootstrap support for F6YKS6 as seed ortholog is 100%.
Bootstrap support for G3JPL9 as seed ortholog is 100%.

Group of orthologs #700. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 C.militaris:259

F6Z0U1              	100.00%		G3JRU4              	100.00%
Bootstrap support for F6Z0U1 as seed ortholog is 100%.
Bootstrap support for G3JRU4 as seed ortholog is 100%.

Group of orthologs #701. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 C.militaris:192

H2Y2L0              	100.00%		G3J4T2              	100.00%
Bootstrap support for H2Y2L0 as seed ortholog is 100%.
Bootstrap support for G3J4T2 as seed ortholog is 99%.

Group of orthologs #702. Best score 259 bits
Score difference with first non-orthologous sequence - C.intestinalis:259 C.militaris:259

H2XW54              	100.00%		G3JU40              	100.00%
Bootstrap support for H2XW54 as seed ortholog is 100%.
Bootstrap support for G3JU40 as seed ortholog is 100%.

Group of orthologs #703. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:147

F6T2C1              	100.00%		G3JDC0              	100.00%
F6T2A6              	72.50%		
Bootstrap support for F6T2C1 as seed ortholog is 100%.
Bootstrap support for G3JDC0 as seed ortholog is 100%.

Group of orthologs #704. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:258

F6VN41              	100.00%		G3J9F6              	100.00%
Bootstrap support for F6VN41 as seed ortholog is 100%.
Bootstrap support for G3J9F6 as seed ortholog is 100%.

Group of orthologs #705. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:258

F6SSM8              	100.00%		G3JGR5              	100.00%
Bootstrap support for F6SSM8 as seed ortholog is 100%.
Bootstrap support for G3JGR5 as seed ortholog is 100%.

Group of orthologs #706. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:258

F6U3Q1              	100.00%		G3JFF9              	100.00%
Bootstrap support for F6U3Q1 as seed ortholog is 100%.
Bootstrap support for G3JFF9 as seed ortholog is 100%.

Group of orthologs #707. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:258

F6SNL0              	100.00%		G3JJ69              	100.00%
Bootstrap support for F6SNL0 as seed ortholog is 100%.
Bootstrap support for G3JJ69 as seed ortholog is 100%.

Group of orthologs #708. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:258

F7AAA7              	100.00%		G3J9V4              	100.00%
Bootstrap support for F7AAA7 as seed ortholog is 100%.
Bootstrap support for G3J9V4 as seed ortholog is 100%.

Group of orthologs #709. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 C.militaris:258

F7BBJ6              	100.00%		G3JK38              	100.00%
Bootstrap support for F7BBJ6 as seed ortholog is 99%.
Bootstrap support for G3JK38 as seed ortholog is 100%.

Group of orthologs #710. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.militaris:81

Q4H383              	100.00%		G3JKB6              	100.00%
Bootstrap support for Q4H383 as seed ortholog is 92%.
Bootstrap support for G3JKB6 as seed ortholog is 97%.

Group of orthologs #711. Best score 258 bits
Score difference with first non-orthologous sequence - C.intestinalis:258 C.militaris:258

Q4H3S6              	100.00%		G3JQU0              	100.00%
Bootstrap support for Q4H3S6 as seed ortholog is 100%.
Bootstrap support for G3JQU0 as seed ortholog is 100%.

Group of orthologs #712. Best score 257 bits
Score difference with first non-orthologous sequence - C.intestinalis:257 C.militaris:257

F6PMY2              	100.00%		G3JU27              	100.00%
Bootstrap support for F6PMY2 as seed ortholog is 100%.
Bootstrap support for G3JU27 as seed ortholog is 100%.

Group of orthologs #713. Best score 257 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:123

F6XGG4              	100.00%		G3JPX6              	100.00%
Bootstrap support for F6XGG4 as seed ortholog is 99%.
Bootstrap support for G3JPX6 as seed ortholog is 99%.

Group of orthologs #714. Best score 257 bits
Score difference with first non-orthologous sequence - C.intestinalis:257 C.militaris:257

Q1RPZ2              	100.00%		G3JLM8              	100.00%
Bootstrap support for Q1RPZ2 as seed ortholog is 100%.
Bootstrap support for G3JLM8 as seed ortholog is 100%.

Group of orthologs #715. Best score 256 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 C.militaris:256

F6XVB0              	100.00%		G3JIX0              	100.00%
F6XG08              	100.00%		G3JS48              	100.00%
Q8T8A6              	30.28%		
Bootstrap support for F6XVB0 as seed ortholog is 100%.
Bootstrap support for F6XG08 as seed ortholog is 100%.
Bootstrap support for G3JIX0 as seed ortholog is 100%.
Bootstrap support for G3JS48 as seed ortholog is 100%.

Group of orthologs #716. Best score 256 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 C.militaris:133

F6RUQ3              	100.00%		G3J4M0              	100.00%
Bootstrap support for F6RUQ3 as seed ortholog is 100%.
Bootstrap support for G3J4M0 as seed ortholog is 100%.

Group of orthologs #717. Best score 256 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 C.militaris:256

F6R4F4              	100.00%		G3JD89              	100.00%
Bootstrap support for F6R4F4 as seed ortholog is 100%.
Bootstrap support for G3JD89 as seed ortholog is 100%.

Group of orthologs #718. Best score 256 bits
Score difference with first non-orthologous sequence - C.intestinalis:256 C.militaris:256

H2XRW4              	100.00%		G3JNG2              	100.00%
Bootstrap support for H2XRW4 as seed ortholog is 100%.
Bootstrap support for G3JNG2 as seed ortholog is 100%.

Group of orthologs #719. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 C.militaris:25

F6S6B2              	100.00%		G3JP35              	100.00%
F6Y1R8              	5.08%		
Bootstrap support for F6S6B2 as seed ortholog is 100%.
Bootstrap support for G3JP35 as seed ortholog is 66%.
Alternative seed ortholog is G3JGE5 (25 bits away from this cluster)

Group of orthologs #720. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 C.militaris:206

F6VKA0              	100.00%		G3JG22              	100.00%
Bootstrap support for F6VKA0 as seed ortholog is 99%.
Bootstrap support for G3JG22 as seed ortholog is 99%.

Group of orthologs #721. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 C.militaris:80

F6V6S8              	100.00%		G3JRS4              	100.00%
Bootstrap support for F6V6S8 as seed ortholog is 100%.
Bootstrap support for G3JRS4 as seed ortholog is 99%.

Group of orthologs #722. Best score 255 bits
Score difference with first non-orthologous sequence - C.intestinalis:255 C.militaris:129

F6YI64              	100.00%		G3JNV3              	100.00%
Bootstrap support for F6YI64 as seed ortholog is 100%.
Bootstrap support for G3JNV3 as seed ortholog is 100%.

Group of orthologs #723. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:53

F6VZQ1              	100.00%		G3J881              	100.00%
                    	       		G3J2V7              	9.11%
                    	       		G3JHP7              	6.68%
Bootstrap support for F6VZQ1 as seed ortholog is 97%.
Bootstrap support for G3J881 as seed ortholog is 90%.

Group of orthologs #724. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 C.militaris:254

F6SWH7              	100.00%		G3J7T2              	100.00%
Bootstrap support for F6SWH7 as seed ortholog is 100%.
Bootstrap support for G3J7T2 as seed ortholog is 100%.

Group of orthologs #725. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 C.militaris:254

F6YSX7              	100.00%		G3J8P4              	100.00%
Bootstrap support for F6YSX7 as seed ortholog is 100%.
Bootstrap support for G3J8P4 as seed ortholog is 100%.

Group of orthologs #726. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 C.militaris:254

F7B5A5              	100.00%		G3J6Q9              	100.00%
Bootstrap support for F7B5A5 as seed ortholog is 100%.
Bootstrap support for G3J6Q9 as seed ortholog is 100%.

Group of orthologs #727. Best score 254 bits
Score difference with first non-orthologous sequence - C.intestinalis:254 C.militaris:93

F6XSF3              	100.00%		G3JTW7              	100.00%
Bootstrap support for F6XSF3 as seed ortholog is 100%.
Bootstrap support for G3JTW7 as seed ortholog is 92%.

Group of orthologs #728. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 C.militaris:253

F6STU7              	100.00%		G3JD40              	100.00%
Bootstrap support for F6STU7 as seed ortholog is 100%.
Bootstrap support for G3JD40 as seed ortholog is 100%.

Group of orthologs #729. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 C.militaris:253

F6ZS04              	100.00%		G3J5V6              	100.00%
Bootstrap support for F6ZS04 as seed ortholog is 100%.
Bootstrap support for G3J5V6 as seed ortholog is 100%.

Group of orthologs #730. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 C.militaris:253

F6X3S3              	100.00%		G3JCJ5              	100.00%
Bootstrap support for F6X3S3 as seed ortholog is 100%.
Bootstrap support for G3JCJ5 as seed ortholog is 100%.

Group of orthologs #731. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 C.militaris:253

F7AHM4              	100.00%		G3JFW2              	100.00%
Bootstrap support for F7AHM4 as seed ortholog is 100%.
Bootstrap support for G3JFW2 as seed ortholog is 100%.

Group of orthologs #732. Best score 253 bits
Score difference with first non-orthologous sequence - C.intestinalis:253 C.militaris:253

F6YTX7              	100.00%		G3JRE5              	100.00%
Bootstrap support for F6YTX7 as seed ortholog is 100%.
Bootstrap support for G3JRE5 as seed ortholog is 100%.

Group of orthologs #733. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:252 C.militaris:252

F6QAP0              	100.00%		G3JAE9              	100.00%
Bootstrap support for F6QAP0 as seed ortholog is 100%.
Bootstrap support for G3JAE9 as seed ortholog is 100%.

Group of orthologs #734. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:252 C.militaris:252

F6SS61              	100.00%		G3J5P4              	100.00%
Bootstrap support for F6SS61 as seed ortholog is 100%.
Bootstrap support for G3J5P4 as seed ortholog is 100%.

Group of orthologs #735. Best score 252 bits
Score difference with first non-orthologous sequence - C.intestinalis:252 C.militaris:252

F6VIA9              	100.00%		G3J2Q8              	100.00%
Bootstrap support for F6VIA9 as seed ortholog is 100%.
Bootstrap support for G3J2Q8 as seed ortholog is 100%.

Group of orthologs #736. Best score 251 bits
Score difference with first non-orthologous sequence - C.intestinalis:25 C.militaris:19

F6R4H2              	100.00%		G3JCW5              	100.00%
Bootstrap support for F6R4H2 as seed ortholog is 76%.
Bootstrap support for G3JCW5 as seed ortholog is 70%.
Alternative seed ortholog is G3J9E3 (19 bits away from this cluster)

Group of orthologs #737. Best score 251 bits
Score difference with first non-orthologous sequence - C.intestinalis:251 C.militaris:251

F6VXD0              	100.00%		G3JDT1              	100.00%
Bootstrap support for F6VXD0 as seed ortholog is 100%.
Bootstrap support for G3JDT1 as seed ortholog is 100%.

Group of orthologs #738. Best score 250 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:250

F6TFD0              	100.00%		G3J4T0              	100.00%
Bootstrap support for F6TFD0 as seed ortholog is 99%.
Bootstrap support for G3J4T0 as seed ortholog is 100%.

Group of orthologs #739. Best score 250 bits
Score difference with first non-orthologous sequence - C.intestinalis:19 C.militaris:53

F6TFY3              	100.00%		G3JD65              	100.00%
Bootstrap support for F6TFY3 as seed ortholog is 79%.
Bootstrap support for G3JD65 as seed ortholog is 98%.

Group of orthologs #740. Best score 250 bits
Score difference with first non-orthologous sequence - C.intestinalis:250 C.militaris:250

F7AEV2              	100.00%		G3J8G9              	100.00%
Bootstrap support for F7AEV2 as seed ortholog is 100%.
Bootstrap support for G3J8G9 as seed ortholog is 100%.

Group of orthologs #741. Best score 250 bits
Score difference with first non-orthologous sequence - C.intestinalis:250 C.militaris:250

F6VD75              	100.00%		G3JL93              	100.00%
Bootstrap support for F6VD75 as seed ortholog is 100%.
Bootstrap support for G3JL93 as seed ortholog is 100%.

Group of orthologs #742. Best score 249 bits
Score difference with first non-orthologous sequence - C.intestinalis:249 C.militaris:249

F6S043              	100.00%		G3JLD7              	100.00%
                    	       		G3JS04              	18.47%
Bootstrap support for F6S043 as seed ortholog is 100%.
Bootstrap support for G3JLD7 as seed ortholog is 100%.

Group of orthologs #743. Best score 249 bits
Score difference with first non-orthologous sequence - C.intestinalis:249 C.militaris:15

F7BDH1              	100.00%		G3JCM9              	100.00%
Bootstrap support for F7BDH1 as seed ortholog is 100%.
Bootstrap support for G3JCM9 as seed ortholog is 45%.
Alternative seed ortholog is G3J880 (15 bits away from this cluster)

Group of orthologs #744. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:248

H2XK16              	100.00%		G3JPU6              	100.00%
F7AHT0              	88.24%		
Bootstrap support for H2XK16 as seed ortholog is 100%.
Bootstrap support for G3JPU6 as seed ortholog is 100%.

Group of orthologs #745. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 C.militaris:248

F6PKD1              	100.00%		G3JAV4              	100.00%
Bootstrap support for F6PKD1 as seed ortholog is 100%.
Bootstrap support for G3JAV4 as seed ortholog is 100%.

Group of orthologs #746. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 C.militaris:248

F6T9R1              	100.00%		G3J5Z8              	100.00%
Bootstrap support for F6T9R1 as seed ortholog is 100%.
Bootstrap support for G3J5Z8 as seed ortholog is 100%.

Group of orthologs #747. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 C.militaris:248

F6Q4K7              	100.00%		G3JI69              	100.00%
Bootstrap support for F6Q4K7 as seed ortholog is 100%.
Bootstrap support for G3JI69 as seed ortholog is 100%.

Group of orthologs #748. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:248

F6TTI3              	100.00%		G3JMN1              	100.00%
Bootstrap support for F6TTI3 as seed ortholog is 99%.
Bootstrap support for G3JMN1 as seed ortholog is 100%.

Group of orthologs #749. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 C.militaris:248

H2XL44              	100.00%		G3J357              	100.00%
Bootstrap support for H2XL44 as seed ortholog is 100%.
Bootstrap support for G3J357 as seed ortholog is 100%.

Group of orthologs #750. Best score 248 bits
Score difference with first non-orthologous sequence - C.intestinalis:248 C.militaris:248

F6WH82              	100.00%		G3JNV2              	100.00%
Bootstrap support for F6WH82 as seed ortholog is 100%.
Bootstrap support for G3JNV2 as seed ortholog is 100%.

Group of orthologs #751. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:247 C.militaris:51

F6YHL8              	100.00%		G3JDR3              	100.00%
F6WRV9              	40.36%		
Bootstrap support for F6YHL8 as seed ortholog is 100%.
Bootstrap support for G3JDR3 as seed ortholog is 84%.

Group of orthologs #752. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:14 C.militaris:247

F6QRC2              	100.00%		G3JDZ4              	100.00%
Bootstrap support for F6QRC2 as seed ortholog is 75%.
Bootstrap support for G3JDZ4 as seed ortholog is 100%.

Group of orthologs #753. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:247

F6QID5              	100.00%		G3JQ67              	100.00%
Bootstrap support for F6QID5 as seed ortholog is 99%.
Bootstrap support for G3JQ67 as seed ortholog is 100%.

Group of orthologs #754. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:247 C.militaris:161

F6UUV9              	100.00%		G3JHK2              	100.00%
Bootstrap support for F6UUV9 as seed ortholog is 100%.
Bootstrap support for G3JHK2 as seed ortholog is 99%.

Group of orthologs #755. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:53

F7AXN3              	100.00%		G3J6Z4              	100.00%
Bootstrap support for F7AXN3 as seed ortholog is 97%.
Bootstrap support for G3J6Z4 as seed ortholog is 82%.

Group of orthologs #756. Best score 247 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 C.militaris:247

H2XZQ0              	100.00%		G3J2P0              	100.00%
Bootstrap support for H2XZQ0 as seed ortholog is 100%.
Bootstrap support for G3J2P0 as seed ortholog is 100%.

Group of orthologs #757. Best score 246 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 C.militaris:35

F6V6J6              	100.00%		G3JQH4              	100.00%
F7AC23              	13.53%		
Bootstrap support for F6V6J6 as seed ortholog is 100%.
Bootstrap support for G3JQH4 as seed ortholog is 52%.
Alternative seed ortholog is G3JM19 (35 bits away from this cluster)

Group of orthologs #758. Best score 246 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 C.militaris:246

F6RNB7              	100.00%		G3JGB9              	100.00%
Bootstrap support for F6RNB7 as seed ortholog is 100%.
Bootstrap support for G3JGB9 as seed ortholog is 100%.

Group of orthologs #759. Best score 246 bits
Score difference with first non-orthologous sequence - C.intestinalis:246 C.militaris:246

F6UJD6              	100.00%		G3JNA9              	100.00%
Bootstrap support for F6UJD6 as seed ortholog is 100%.
Bootstrap support for G3JNA9 as seed ortholog is 100%.

Group of orthologs #760. Best score 245 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:12

F6Z9D3              	100.00%		G3J4D8              	100.00%
F7B9D6              	9.76%		
Bootstrap support for F6Z9D3 as seed ortholog is 94%.
Bootstrap support for G3J4D8 as seed ortholog is 63%.
Alternative seed ortholog is G3J991 (12 bits away from this cluster)

Group of orthologs #761. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:17 C.militaris:244

F6RUN6              	100.00%		G3J656              	100.00%
                    	       		G3JGG6              	8.36%
Bootstrap support for F6RUN6 as seed ortholog is 67%.
Alternative seed ortholog is F7AX97 (17 bits away from this cluster)
Bootstrap support for G3J656 as seed ortholog is 100%.

Group of orthologs #762. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:244 C.militaris:244

F6YGN3              	100.00%		G3JCQ4              	100.00%
F7A8J9              	12.83%		
Bootstrap support for F6YGN3 as seed ortholog is 100%.
Bootstrap support for G3JCQ4 as seed ortholog is 100%.

Group of orthologs #763. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:111

F6WAG8              	100.00%		G3J5A6              	100.00%
Bootstrap support for F6WAG8 as seed ortholog is 99%.
Bootstrap support for G3J5A6 as seed ortholog is 99%.

Group of orthologs #764. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:3 C.militaris:244

H2XS39              	100.00%		G3JTP0              	100.00%
Bootstrap support for H2XS39 as seed ortholog is 47%.
Alternative seed ortholog is F6V2M0 (3 bits away from this cluster)
Bootstrap support for G3JTP0 as seed ortholog is 100%.

Group of orthologs #765. Best score 244 bits
Score difference with first non-orthologous sequence - C.intestinalis:244 C.militaris:244

H2Y3P6              	100.00%		G3JT35              	100.00%
Bootstrap support for H2Y3P6 as seed ortholog is 100%.
Bootstrap support for G3JT35 as seed ortholog is 100%.

Group of orthologs #766. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:127

F6Y5B7              	100.00%		G3J4N5              	100.00%
F6Y615              	11.43%		
F6Y4V4              	10.00%		
Bootstrap support for F6Y5B7 as seed ortholog is 99%.
Bootstrap support for G3J4N5 as seed ortholog is 100%.

Group of orthologs #767. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:31

F6S4F7              	100.00%		G3JIZ3              	100.00%
F6PPJ1              	9.48%		
Bootstrap support for F6S4F7 as seed ortholog is 95%.
Bootstrap support for G3JIZ3 as seed ortholog is 81%.

Group of orthologs #768. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:243 C.militaris:243

F6TXN5              	100.00%		G3J3A1              	100.00%
Bootstrap support for F6TXN5 as seed ortholog is 100%.
Bootstrap support for G3J3A1 as seed ortholog is 100%.

Group of orthologs #769. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:153

F6R683              	100.00%		G3JGG8              	100.00%
Bootstrap support for F6R683 as seed ortholog is 100%.
Bootstrap support for G3JGG8 as seed ortholog is 100%.

Group of orthologs #770. Best score 243 bits
Score difference with first non-orthologous sequence - C.intestinalis:243 C.militaris:243

F6WAT8              	100.00%		G3JGP8              	100.00%
Bootstrap support for F6WAT8 as seed ortholog is 100%.
Bootstrap support for G3JGP8 as seed ortholog is 100%.

Group of orthologs #771. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:242

F6QSK8              	100.00%		G3J4C5              	100.00%
Bootstrap support for F6QSK8 as seed ortholog is 100%.
Bootstrap support for G3J4C5 as seed ortholog is 100%.

Group of orthologs #772. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:24

F7AEF7              	100.00%		G3J5L8              	100.00%
Bootstrap support for F7AEF7 as seed ortholog is 87%.
Bootstrap support for G3J5L8 as seed ortholog is 67%.
Alternative seed ortholog is G3JEM6 (24 bits away from this cluster)

Group of orthologs #773. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:242

F6TTJ7              	100.00%		G3JLS9              	100.00%
Bootstrap support for F6TTJ7 as seed ortholog is 100%.
Bootstrap support for G3JLS9 as seed ortholog is 100%.

Group of orthologs #774. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:242

F6XVH7              	100.00%		G3JDL8              	100.00%
Bootstrap support for F6XVH7 as seed ortholog is 100%.
Bootstrap support for G3JDL8 as seed ortholog is 100%.

Group of orthologs #775. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:242

F7ATS3              	100.00%		G3JCV4              	100.00%
Bootstrap support for F7ATS3 as seed ortholog is 100%.
Bootstrap support for G3JCV4 as seed ortholog is 100%.

Group of orthologs #776. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:242

F6YYA5              	100.00%		G3JJY8              	100.00%
Bootstrap support for F6YYA5 as seed ortholog is 100%.
Bootstrap support for G3JJY8 as seed ortholog is 100%.

Group of orthologs #777. Best score 242 bits
Score difference with first non-orthologous sequence - C.intestinalis:242 C.militaris:242

F6Z910              	100.00%		G3JR17              	100.00%
Bootstrap support for F6Z910 as seed ortholog is 100%.
Bootstrap support for G3JR17 as seed ortholog is 100%.

Group of orthologs #778. Best score 241 bits
Score difference with first non-orthologous sequence - C.intestinalis:241 C.militaris:241

F6SAH8              	100.00%		G3JQ40              	100.00%
Bootstrap support for F6SAH8 as seed ortholog is 100%.
Bootstrap support for G3JQ40 as seed ortholog is 100%.

Group of orthologs #779. Best score 240 bits
Score difference with first non-orthologous sequence - C.intestinalis:240 C.militaris:240

F6TMN3              	100.00%		G3JNT1              	100.00%
Bootstrap support for F6TMN3 as seed ortholog is 100%.
Bootstrap support for G3JNT1 as seed ortholog is 100%.

Group of orthologs #780. Best score 240 bits
Score difference with first non-orthologous sequence - C.intestinalis:240 C.militaris:240

F7B2R9              	100.00%		G3JU99              	100.00%
Bootstrap support for F7B2R9 as seed ortholog is 100%.
Bootstrap support for G3JU99 as seed ortholog is 100%.

Group of orthologs #781. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:39

H2XQH0              	100.00%		G3J6J5              	100.00%
F6ZRC6              	33.65%		G3JMV9              	16.67%
H2XUY3              	13.94%		
Bootstrap support for H2XQH0 as seed ortholog is 97%.
Bootstrap support for G3J6J5 as seed ortholog is 86%.

Group of orthologs #782. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:239 C.militaris:239

F6Q0S7              	100.00%		G3J334              	100.00%
Bootstrap support for F6Q0S7 as seed ortholog is 100%.
Bootstrap support for G3J334 as seed ortholog is 100%.

Group of orthologs #783. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:239

F6SM85              	100.00%		G3JKW7              	100.00%
Bootstrap support for F6SM85 as seed ortholog is 98%.
Bootstrap support for G3JKW7 as seed ortholog is 100%.

Group of orthologs #784. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:239 C.militaris:239

F6YGL5              	100.00%		G3J8P9              	100.00%
Bootstrap support for F6YGL5 as seed ortholog is 100%.
Bootstrap support for G3J8P9 as seed ortholog is 100%.

Group of orthologs #785. Best score 239 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.militaris:116

F7AB24              	100.00%		G3J4I1              	100.00%
Bootstrap support for F7AB24 as seed ortholog is 100%.
Bootstrap support for G3J4I1 as seed ortholog is 99%.

Group of orthologs #786. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 C.militaris:238

F6TMB1              	100.00%		G3J4I9              	100.00%
Bootstrap support for F6TMB1 as seed ortholog is 100%.
Bootstrap support for G3J4I9 as seed ortholog is 100%.

Group of orthologs #787. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 C.militaris:238

H2XMX2              	100.00%		G3JCF6              	100.00%
Bootstrap support for H2XMX2 as seed ortholog is 100%.
Bootstrap support for G3JCF6 as seed ortholog is 100%.

Group of orthologs #788. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 C.militaris:238

F7A5L4              	100.00%		G3JLR0              	100.00%
Bootstrap support for F7A5L4 as seed ortholog is 100%.
Bootstrap support for G3JLR0 as seed ortholog is 100%.

Group of orthologs #789. Best score 238 bits
Score difference with first non-orthologous sequence - C.intestinalis:238 C.militaris:238

H2XY10              	100.00%		G3JCP6              	100.00%
Bootstrap support for H2XY10 as seed ortholog is 100%.
Bootstrap support for G3JCP6 as seed ortholog is 100%.

Group of orthologs #790. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 C.militaris:237

F6ZYB8              	100.00%		G3JCK6              	100.00%
F6Q9D5              	15.27%		G3J9I2              	25.59%
F6RCP1              	11.69%		
Bootstrap support for F6ZYB8 as seed ortholog is 100%.
Bootstrap support for G3JCK6 as seed ortholog is 100%.

Group of orthologs #791. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 C.militaris:28

F6XEX3              	100.00%		G3JNS2              	100.00%
F6XEW4              	31.24%		
Bootstrap support for F6XEX3 as seed ortholog is 100%.
Bootstrap support for G3JNS2 as seed ortholog is 73%.
Alternative seed ortholog is G3J511 (28 bits away from this cluster)

Group of orthologs #792. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 C.militaris:237

F6PRY2              	100.00%		G3J7N5              	100.00%
Bootstrap support for F6PRY2 as seed ortholog is 100%.
Bootstrap support for G3J7N5 as seed ortholog is 100%.

Group of orthologs #793. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 C.militaris:237

F6SSU2              	100.00%		G3J8W8              	100.00%
Bootstrap support for F6SSU2 as seed ortholog is 100%.
Bootstrap support for G3J8W8 as seed ortholog is 100%.

Group of orthologs #794. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 C.militaris:237

F6WYU9              	100.00%		G3JM88              	100.00%
Bootstrap support for F6WYU9 as seed ortholog is 100%.
Bootstrap support for G3JM88 as seed ortholog is 100%.

Group of orthologs #795. Best score 237 bits
Score difference with first non-orthologous sequence - C.intestinalis:237 C.militaris:237

H2XVM9              	100.00%		G3JCP8              	100.00%
Bootstrap support for H2XVM9 as seed ortholog is 100%.
Bootstrap support for G3JCP8 as seed ortholog is 100%.

Group of orthologs #796. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:236 C.militaris:236

H2XU57              	100.00%		G3J8N0              	100.00%
Q8I7D6              	96.92%		
Bootstrap support for H2XU57 as seed ortholog is 100%.
Bootstrap support for G3J8N0 as seed ortholog is 100%.

Group of orthologs #797. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.militaris:236

F6ZS66              	100.00%		G3J569              	100.00%
Bootstrap support for F6ZS66 as seed ortholog is 96%.
Bootstrap support for G3J569 as seed ortholog is 100%.

Group of orthologs #798. Best score 236 bits
Score difference with first non-orthologous sequence - C.intestinalis:236 C.militaris:236

F7BF26              	100.00%		G3J4S1              	100.00%
Bootstrap support for F7BF26 as seed ortholog is 100%.
Bootstrap support for G3J4S1 as seed ortholog is 100%.

Group of orthologs #799. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 C.militaris:235

F6QS75              	100.00%		G3JJY6              	100.00%
                    	       		G3JSA7              	6.26%
Bootstrap support for F6QS75 as seed ortholog is 100%.
Bootstrap support for G3JJY6 as seed ortholog is 100%.

Group of orthologs #800. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 C.militaris:235

F6U2U3              	100.00%		G3JBF3              	100.00%
Bootstrap support for F6U2U3 as seed ortholog is 100%.
Bootstrap support for G3JBF3 as seed ortholog is 100%.

Group of orthologs #801. Best score 235 bits
Score difference with first non-orthologous sequence - C.intestinalis:235 C.militaris:235

F6SYV7              	100.00%		G3JFZ5              	100.00%
Bootstrap support for F6SYV7 as seed ortholog is 100%.
Bootstrap support for G3JFZ5 as seed ortholog is 100%.

Group of orthologs #802. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 C.militaris:234

F6S6A5              	100.00%		G3J560              	100.00%
Bootstrap support for F6S6A5 as seed ortholog is 100%.
Bootstrap support for G3J560 as seed ortholog is 100%.

Group of orthologs #803. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 C.militaris:234

F6W713              	100.00%		G3JE13              	100.00%
Bootstrap support for F6W713 as seed ortholog is 100%.
Bootstrap support for G3JE13 as seed ortholog is 100%.

Group of orthologs #804. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 C.militaris:234

F7AEY7              	100.00%		G3J5Z0              	100.00%
Bootstrap support for F7AEY7 as seed ortholog is 100%.
Bootstrap support for G3J5Z0 as seed ortholog is 100%.

Group of orthologs #805. Best score 234 bits
Score difference with first non-orthologous sequence - C.intestinalis:234 C.militaris:234

H2XY27              	100.00%		G3J3N3              	100.00%
Bootstrap support for H2XY27 as seed ortholog is 100%.
Bootstrap support for G3J3N3 as seed ortholog is 100%.

Group of orthologs #806. Best score 233 bits
Score difference with first non-orthologous sequence - C.intestinalis:233 C.militaris:233

F7BKD9              	100.00%		G3JFI0              	100.00%
                    	       		G3JIA7              	46.97%
Bootstrap support for F7BKD9 as seed ortholog is 100%.
Bootstrap support for G3JFI0 as seed ortholog is 100%.

Group of orthologs #807. Best score 233 bits
Score difference with first non-orthologous sequence - C.intestinalis:233 C.militaris:233

F6PM63              	100.00%		G3J3Q3              	100.00%
Bootstrap support for F6PM63 as seed ortholog is 100%.
Bootstrap support for G3J3Q3 as seed ortholog is 100%.

Group of orthologs #808. Best score 233 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.militaris:146

F6VHJ0              	100.00%		G3JC10              	100.00%
Bootstrap support for F6VHJ0 as seed ortholog is 99%.
Bootstrap support for G3JC10 as seed ortholog is 99%.

Group of orthologs #809. Best score 233 bits
Score difference with first non-orthologous sequence - C.intestinalis:233 C.militaris:233

F6QE16              	100.00%		G3JUT6              	100.00%
Bootstrap support for F6QE16 as seed ortholog is 100%.
Bootstrap support for G3JUT6 as seed ortholog is 100%.

Group of orthologs #810. Best score 232 bits
Score difference with first non-orthologous sequence - C.intestinalis:232 C.militaris:232

F6UZS7              	100.00%		G3JBB0              	100.00%
Bootstrap support for F6UZS7 as seed ortholog is 100%.
Bootstrap support for G3JBB0 as seed ortholog is 100%.

Group of orthologs #811. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 C.militaris:231

F7AAM4              	100.00%		G3JPG4              	100.00%
F6WJH6              	37.41%		
Bootstrap support for F7AAM4 as seed ortholog is 100%.
Bootstrap support for G3JPG4 as seed ortholog is 100%.

Group of orthologs #812. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 C.militaris:231

F6UP98              	100.00%		G3J777              	100.00%
Bootstrap support for F6UP98 as seed ortholog is 100%.
Bootstrap support for G3J777 as seed ortholog is 100%.

Group of orthologs #813. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:30

F6S1S7              	100.00%		G3JDR6              	100.00%
Bootstrap support for F6S1S7 as seed ortholog is 99%.
Bootstrap support for G3JDR6 as seed ortholog is 86%.

Group of orthologs #814. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 C.militaris:231

F6TJ76              	100.00%		G3JLH2              	100.00%
Bootstrap support for F6TJ76 as seed ortholog is 100%.
Bootstrap support for G3JLH2 as seed ortholog is 100%.

Group of orthologs #815. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 C.militaris:231

F6YG81              	100.00%		G3JDE0              	100.00%
Bootstrap support for F6YG81 as seed ortholog is 100%.
Bootstrap support for G3JDE0 as seed ortholog is 100%.

Group of orthologs #816. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:231 C.militaris:122

F6ZU35              	100.00%		G3JMH4              	100.00%
Bootstrap support for F6ZU35 as seed ortholog is 100%.
Bootstrap support for G3JMH4 as seed ortholog is 99%.

Group of orthologs #817. Best score 231 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:106

Q8I7E2              	100.00%		G3J821              	100.00%
Bootstrap support for Q8I7E2 as seed ortholog is 96%.
Bootstrap support for G3J821 as seed ortholog is 99%.

Group of orthologs #818. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 C.militaris:181

F7BJS1              	100.00%		G3J7C2              	100.00%
                    	       		G3JQM6              	14.93%
Bootstrap support for F7BJS1 as seed ortholog is 99%.
Bootstrap support for G3J7C2 as seed ortholog is 100%.

Group of orthologs #819. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 C.militaris:230

F6R6J0              	100.00%		G3J4J4              	100.00%
Bootstrap support for F6R6J0 as seed ortholog is 100%.
Bootstrap support for G3J4J4 as seed ortholog is 100%.

Group of orthologs #820. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 C.militaris:230

F6TGK6              	100.00%		G3J4P1              	100.00%
Bootstrap support for F6TGK6 as seed ortholog is 100%.
Bootstrap support for G3J4P1 as seed ortholog is 100%.

Group of orthologs #821. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:139

F6SP32              	100.00%		G3J986              	100.00%
Bootstrap support for F6SP32 as seed ortholog is 99%.
Bootstrap support for G3J986 as seed ortholog is 99%.

Group of orthologs #822. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.militaris:230

F6ZVR2              	100.00%		G3J4C0              	100.00%
Bootstrap support for F6ZVR2 as seed ortholog is 99%.
Bootstrap support for G3J4C0 as seed ortholog is 100%.

Group of orthologs #823. Best score 230 bits
Score difference with first non-orthologous sequence - C.intestinalis:230 C.militaris:230

Q1RLA5              	100.00%		G3J917              	100.00%
Bootstrap support for Q1RLA5 as seed ortholog is 100%.
Bootstrap support for G3J917 as seed ortholog is 100%.

Group of orthologs #824. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 C.militaris:229

F6RCC2              	100.00%		G3JJ71              	100.00%
I6L237              	96.68%		
Bootstrap support for F6RCC2 as seed ortholog is 100%.
Bootstrap support for G3JJ71 as seed ortholog is 100%.

Group of orthologs #825. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 C.militaris:229

F6YG66              	100.00%		G3JNQ8              	100.00%
H2XPD2              	10.82%		
Bootstrap support for F6YG66 as seed ortholog is 100%.
Bootstrap support for G3JNQ8 as seed ortholog is 100%.

Group of orthologs #826. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 C.militaris:229

F6TFE2              	100.00%		G3J6D0              	100.00%
Bootstrap support for F6TFE2 as seed ortholog is 100%.
Bootstrap support for G3J6D0 as seed ortholog is 100%.

Group of orthologs #827. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.militaris:140

F6UQ99              	100.00%		G3J3T4              	100.00%
Bootstrap support for F6UQ99 as seed ortholog is 100%.
Bootstrap support for G3J3T4 as seed ortholog is 99%.

Group of orthologs #828. Best score 229 bits
Score difference with first non-orthologous sequence - C.intestinalis:229 C.militaris:229

Q8I7E3              	100.00%		G3JMN2              	100.00%
Bootstrap support for Q8I7E3 as seed ortholog is 100%.
Bootstrap support for G3JMN2 as seed ortholog is 100%.

Group of orthologs #829. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:37 C.militaris:228

F6Y7P7              	100.00%		G3JBH3              	100.00%
                    	       		G3JAE7              	43.90%
Bootstrap support for F6Y7P7 as seed ortholog is 72%.
Alternative seed ortholog is F7ATI9 (37 bits away from this cluster)
Bootstrap support for G3JBH3 as seed ortholog is 100%.

Group of orthologs #830. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 C.militaris:228

F6PKT6              	100.00%		G3J3G9              	100.00%
Bootstrap support for F6PKT6 as seed ortholog is 100%.
Bootstrap support for G3J3G9 as seed ortholog is 100%.

Group of orthologs #831. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 C.militaris:228

F6RGI4              	100.00%		G3JDA2              	100.00%
Bootstrap support for F6RGI4 as seed ortholog is 100%.
Bootstrap support for G3JDA2 as seed ortholog is 100%.

Group of orthologs #832. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 C.militaris:228

F6TJ64              	100.00%		G3JN57              	100.00%
Bootstrap support for F6TJ64 as seed ortholog is 100%.
Bootstrap support for G3JN57 as seed ortholog is 100%.

Group of orthologs #833. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:228 C.militaris:228

F6WSV3              	100.00%		G3JN61              	100.00%
Bootstrap support for F6WSV3 as seed ortholog is 100%.
Bootstrap support for G3JN61 as seed ortholog is 100%.

Group of orthologs #834. Best score 228 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.militaris:228

H2XKP7              	100.00%		G3JE14              	100.00%
Bootstrap support for H2XKP7 as seed ortholog is 27%.
Alternative seed ortholog is F6Z370 (73 bits away from this cluster)
Bootstrap support for G3JE14 as seed ortholog is 100%.

Group of orthologs #835. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 C.militaris:227

F6QX56              	100.00%		G3JUK4              	100.00%
                    	       		G3J5Y0              	12.04%
Bootstrap support for F6QX56 as seed ortholog is 100%.
Bootstrap support for G3JUK4 as seed ortholog is 100%.

Group of orthologs #836. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 C.militaris:227

F6WUH0              	100.00%		G3J3N6              	100.00%
Bootstrap support for F6WUH0 as seed ortholog is 100%.
Bootstrap support for G3J3N6 as seed ortholog is 100%.

Group of orthologs #837. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:227 C.militaris:227

F6YDG1              	100.00%		G3JHS1              	100.00%
Bootstrap support for F6YDG1 as seed ortholog is 100%.
Bootstrap support for G3JHS1 as seed ortholog is 100%.

Group of orthologs #838. Best score 227 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:103

H2XRU5              	100.00%		G3JJB4              	100.00%
Bootstrap support for H2XRU5 as seed ortholog is 100%.
Bootstrap support for G3JJB4 as seed ortholog is 100%.

Group of orthologs #839. Best score 226 bits
Score difference with first non-orthologous sequence - C.intestinalis:226 C.militaris:226

F6UEG1              	100.00%		G3J7L8              	100.00%
F6RSU8              	13.29%		G3JJW6              	6.08%
Bootstrap support for F6UEG1 as seed ortholog is 100%.
Bootstrap support for G3J7L8 as seed ortholog is 100%.

Group of orthologs #840. Best score 226 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:226

F7B1Y1              	100.00%		G3JPX2              	100.00%
Q8I7D5              	89.55%		
Bootstrap support for F7B1Y1 as seed ortholog is 100%.
Bootstrap support for G3JPX2 as seed ortholog is 100%.

Group of orthologs #841. Best score 226 bits
Score difference with first non-orthologous sequence - C.intestinalis:226 C.militaris:226

F7AGW4              	100.00%		G3JCG4              	100.00%
Bootstrap support for F7AGW4 as seed ortholog is 100%.
Bootstrap support for G3JCG4 as seed ortholog is 100%.

Group of orthologs #842. Best score 226 bits
Score difference with first non-orthologous sequence - C.intestinalis:11 C.militaris:58

H2Y3T6              	100.00%		G3JLK2              	100.00%
Bootstrap support for H2Y3T6 as seed ortholog is 28%.
Alternative seed ortholog is H2Y3H5 (11 bits away from this cluster)
Bootstrap support for G3JLK2 as seed ortholog is 98%.

Group of orthologs #843. Best score 225 bits
Score difference with first non-orthologous sequence - C.intestinalis:225 C.militaris:225

F6PQW3              	100.00%		G3JQQ0              	100.00%
F7AXL0              	5.36%		
Bootstrap support for F6PQW3 as seed ortholog is 100%.
Bootstrap support for G3JQQ0 as seed ortholog is 100%.

Group of orthologs #844. Best score 225 bits
Score difference with first non-orthologous sequence - C.intestinalis:38 C.militaris:225

F6Q1G7              	100.00%		G3JCQ6              	100.00%
Bootstrap support for F6Q1G7 as seed ortholog is 88%.
Bootstrap support for G3JCQ6 as seed ortholog is 100%.

Group of orthologs #845. Best score 225 bits
Score difference with first non-orthologous sequence - C.intestinalis:225 C.militaris:111

F6YFP0              	100.00%		G3J2S1              	100.00%
Bootstrap support for F6YFP0 as seed ortholog is 100%.
Bootstrap support for G3J2S1 as seed ortholog is 98%.

Group of orthologs #846. Best score 225 bits
Score difference with first non-orthologous sequence - C.intestinalis:225 C.militaris:225

F6XVY9              	100.00%		G3JCH4              	100.00%
Bootstrap support for F6XVY9 as seed ortholog is 100%.
Bootstrap support for G3JCH4 as seed ortholog is 100%.

Group of orthologs #847. Best score 225 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:225

F6U8M8              	100.00%		G3JUC2              	100.00%
Bootstrap support for F6U8M8 as seed ortholog is 99%.
Bootstrap support for G3JUC2 as seed ortholog is 100%.

Group of orthologs #848. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 C.militaris:224

H2XNN8              	100.00%		G3JF17              	100.00%
                    	       		G3J4S3              	8.21%
Bootstrap support for H2XNN8 as seed ortholog is 99%.
Bootstrap support for G3JF17 as seed ortholog is 100%.

Group of orthologs #849. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:224

F6S8Z0              	100.00%		G3J7Z4              	100.00%
Bootstrap support for F6S8Z0 as seed ortholog is 99%.
Bootstrap support for G3J7Z4 as seed ortholog is 100%.

Group of orthologs #850. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:98

F6RD19              	100.00%		G3JFK0              	100.00%
Bootstrap support for F6RD19 as seed ortholog is 92%.
Bootstrap support for G3JFK0 as seed ortholog is 99%.

Group of orthologs #851. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:98

F6Z241              	100.00%		G3JL02              	100.00%
Bootstrap support for F6Z241 as seed ortholog is 99%.
Bootstrap support for G3JL02 as seed ortholog is 99%.

Group of orthologs #852. Best score 224 bits
Score difference with first non-orthologous sequence - C.intestinalis:224 C.militaris:224

H2XWU7              	100.00%		G3J904              	100.00%
Bootstrap support for H2XWU7 as seed ortholog is 100%.
Bootstrap support for G3J904 as seed ortholog is 100%.

Group of orthologs #853. Best score 223 bits
Score difference with first non-orthologous sequence - C.intestinalis:223 C.militaris:223

F6TAD8              	100.00%		G3J8Q3              	100.00%
Bootstrap support for F6TAD8 as seed ortholog is 100%.
Bootstrap support for G3J8Q3 as seed ortholog is 100%.

Group of orthologs #854. Best score 223 bits
Score difference with first non-orthologous sequence - C.intestinalis:223 C.militaris:223

H2XVM3              	100.00%		G3J451              	100.00%
Bootstrap support for H2XVM3 as seed ortholog is 100%.
Bootstrap support for G3J451 as seed ortholog is 100%.

Group of orthologs #855. Best score 223 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:122

L7N0R5              	100.00%		G3JTX0              	100.00%
Bootstrap support for L7N0R5 as seed ortholog is 100%.
Bootstrap support for G3JTX0 as seed ortholog is 99%.

Group of orthologs #856. Best score 222 bits
Score difference with first non-orthologous sequence - C.intestinalis:222 C.militaris:222

F6Z781              	100.00%		G3JJU8              	100.00%
Bootstrap support for F6Z781 as seed ortholog is 100%.
Bootstrap support for G3JJU8 as seed ortholog is 100%.

Group of orthologs #857. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 C.militaris:70

F6PK80              	100.00%		G3JHF4              	100.00%
F6QWK4              	9.19%		G3JLJ4              	19.17%
Bootstrap support for F6PK80 as seed ortholog is 100%.
Bootstrap support for G3JHF4 as seed ortholog is 89%.

Group of orthologs #858. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 C.militaris:221

F6WYT3              	100.00%		G3JU81              	100.00%
H2XRA0              	20.75%		
Bootstrap support for F6WYT3 as seed ortholog is 100%.
Bootstrap support for G3JU81 as seed ortholog is 100%.

Group of orthologs #859. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 C.militaris:221

F6THM1              	100.00%		G3J526              	100.00%
Bootstrap support for F6THM1 as seed ortholog is 99%.
Bootstrap support for G3J526 as seed ortholog is 100%.

Group of orthologs #860. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 C.militaris:221

F6ZN43              	100.00%		G3J723              	100.00%
Bootstrap support for F6ZN43 as seed ortholog is 100%.
Bootstrap support for G3J723 as seed ortholog is 100%.

Group of orthologs #861. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:221 C.militaris:47

F6PQL4              	100.00%		G3JU78              	100.00%
Bootstrap support for F6PQL4 as seed ortholog is 100%.
Bootstrap support for G3JU78 as seed ortholog is 92%.

Group of orthologs #862. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:221

F6ZUD0              	100.00%		G3JM43              	100.00%
Bootstrap support for F6ZUD0 as seed ortholog is 100%.
Bootstrap support for G3JM43 as seed ortholog is 100%.

Group of orthologs #863. Best score 221 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:147

H2XW45              	100.00%		G3JS56              	100.00%
Bootstrap support for H2XW45 as seed ortholog is 100%.
Bootstrap support for G3JS56 as seed ortholog is 100%.

Group of orthologs #864. Best score 220 bits
Score difference with first non-orthologous sequence - C.intestinalis:220 C.militaris:220

F6XVD3              	100.00%		G3J3U1              	100.00%
Bootstrap support for F6XVD3 as seed ortholog is 100%.
Bootstrap support for G3J3U1 as seed ortholog is 100%.

Group of orthologs #865. Best score 220 bits
Score difference with first non-orthologous sequence - C.intestinalis:220 C.militaris:220

F6X9L5              	100.00%		G3JRE3              	100.00%
Bootstrap support for F6X9L5 as seed ortholog is 100%.
Bootstrap support for G3JRE3 as seed ortholog is 100%.

Group of orthologs #866. Best score 219 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 C.militaris:219

F7B0X0              	100.00%		G3J2M9              	100.00%
Bootstrap support for F7B0X0 as seed ortholog is 100%.
Bootstrap support for G3J2M9 as seed ortholog is 100%.

Group of orthologs #867. Best score 219 bits
Score difference with first non-orthologous sequence - C.intestinalis:219 C.militaris:219

F6V6R4              	100.00%		G3JQY9              	100.00%
Bootstrap support for F6V6R4 as seed ortholog is 100%.
Bootstrap support for G3JQY9 as seed ortholog is 100%.

Group of orthologs #868. Best score 218 bits
Score difference with first non-orthologous sequence - C.intestinalis:218 C.militaris:33

Q967X2              	100.00%		G3J3F7              	100.00%
Bootstrap support for Q967X2 as seed ortholog is 100%.
Bootstrap support for G3J3F7 as seed ortholog is 92%.

Group of orthologs #869. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:217

F6X9M4              	100.00%		G3JC76              	100.00%
F6WX88              	28.32%		
F7AZV4              	27.65%		
F6TAM4              	21.87%		
F6WBL5              	19.46%		
F6UPM0              	17.24%		
F6Y9W3              	16.67%		
H2XV07              	15.80%		
F6XTN6              	15.03%		
F6VKE2              	11.18%		
F6SGT8              	10.98%		
F6YPZ5              	10.50%		
F6YPI9              	9.06%		
F6SIE8              	8.86%		
F6V5B4              	8.38%		
F6VSC2              	7.23%		
F6QN34              	5.30%		
Bootstrap support for F6X9M4 as seed ortholog is 96%.
Bootstrap support for G3JC76 as seed ortholog is 100%.

Group of orthologs #870. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 C.militaris:217

F6TCH6              	100.00%		G3J7T3              	100.00%
Bootstrap support for F6TCH6 as seed ortholog is 100%.
Bootstrap support for G3J7T3 as seed ortholog is 100%.

Group of orthologs #871. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:8 C.militaris:112

H2XLJ3              	100.00%		G3JB36              	100.00%
Bootstrap support for H2XLJ3 as seed ortholog is 63%.
Alternative seed ortholog is F6TYN3 (8 bits away from this cluster)
Bootstrap support for G3JB36 as seed ortholog is 100%.

Group of orthologs #872. Best score 217 bits
Score difference with first non-orthologous sequence - C.intestinalis:217 C.militaris:217

F7AI93              	100.00%		G3JMV1              	100.00%
Bootstrap support for F7AI93 as seed ortholog is 100%.
Bootstrap support for G3JMV1 as seed ortholog is 100%.

Group of orthologs #873. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:216 C.militaris:216

F6SHN0              	100.00%		G3JSV2              	100.00%
F6TSK2              	61.67%		
Bootstrap support for F6SHN0 as seed ortholog is 100%.
Bootstrap support for G3JSV2 as seed ortholog is 100%.

Group of orthologs #874. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:128

F6T7Y6              	100.00%		G3JBZ4              	100.00%
Bootstrap support for F6T7Y6 as seed ortholog is 99%.
Bootstrap support for G3JBZ4 as seed ortholog is 100%.

Group of orthologs #875. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:74

F7AFR6              	100.00%		G3J8I4              	100.00%
Bootstrap support for F7AFR6 as seed ortholog is 96%.
Bootstrap support for G3J8I4 as seed ortholog is 92%.

Group of orthologs #876. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:216 C.militaris:216

F6YHC8              	100.00%		G3JN40              	100.00%
Bootstrap support for F6YHC8 as seed ortholog is 100%.
Bootstrap support for G3JN40 as seed ortholog is 100%.

Group of orthologs #877. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:216 C.militaris:216

F7B658              	100.00%		G3JR11              	100.00%
Bootstrap support for F7B658 as seed ortholog is 100%.
Bootstrap support for G3JR11 as seed ortholog is 100%.

Group of orthologs #878. Best score 216 bits
Score difference with first non-orthologous sequence - C.intestinalis:216 C.militaris:216

H2XNG1              	100.00%		G3JN04              	100.00%
Bootstrap support for H2XNG1 as seed ortholog is 100%.
Bootstrap support for G3JN04 as seed ortholog is 100%.

Group of orthologs #879. Best score 215 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 C.militaris:58

F7A0D6              	100.00%		G3J2W8              	100.00%
                    	       		G3JH24              	44.52%
                    	       		G3JNF0              	40.86%
Bootstrap support for F7A0D6 as seed ortholog is 100%.
Bootstrap support for G3J2W8 as seed ortholog is 89%.

Group of orthologs #880. Best score 215 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 C.militaris:215

F6YRR0              	100.00%		G3JT26              	100.00%
Bootstrap support for F6YRR0 as seed ortholog is 100%.
Bootstrap support for G3JT26 as seed ortholog is 100%.

Group of orthologs #881. Best score 215 bits
Score difference with first non-orthologous sequence - C.intestinalis:215 C.militaris:215

H2XQ81              	100.00%		G3JQL3              	100.00%
Bootstrap support for H2XQ81 as seed ortholog is 100%.
Bootstrap support for G3JQL3 as seed ortholog is 100%.

Group of orthologs #882. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 C.militaris:214

F6XVH4              	100.00%		G3JCE9              	100.00%
Bootstrap support for F6XVH4 as seed ortholog is 100%.
Bootstrap support for G3JCE9 as seed ortholog is 100%.

Group of orthologs #883. Best score 214 bits
Score difference with first non-orthologous sequence - C.intestinalis:214 C.militaris:214

F6VKZ4              	100.00%		G3JM12              	100.00%
Bootstrap support for F6VKZ4 as seed ortholog is 100%.
Bootstrap support for G3JM12 as seed ortholog is 100%.

Group of orthologs #884. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:93

F6TYS5              	100.00%		G3JA31              	100.00%
Bootstrap support for F6TYS5 as seed ortholog is 99%.
Bootstrap support for G3JA31 as seed ortholog is 99%.

Group of orthologs #885. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 C.militaris:213

F6UDY1              	100.00%		G3JHT6              	100.00%
Bootstrap support for F6UDY1 as seed ortholog is 100%.
Bootstrap support for G3JHT6 as seed ortholog is 100%.

Group of orthologs #886. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:25 C.militaris:125

F6WNH9              	100.00%		G3JEK3              	100.00%
Bootstrap support for F6WNH9 as seed ortholog is 80%.
Bootstrap support for G3JEK3 as seed ortholog is 99%.

Group of orthologs #887. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 C.militaris:213

F6XWE7              	100.00%		G3JLH8              	100.00%
Bootstrap support for F6XWE7 as seed ortholog is 100%.
Bootstrap support for G3JLH8 as seed ortholog is 100%.

Group of orthologs #888. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 C.militaris:213

F7ASM2              	100.00%		G3JFP5              	100.00%
Bootstrap support for F7ASM2 as seed ortholog is 100%.
Bootstrap support for G3JFP5 as seed ortholog is 100%.

Group of orthologs #889. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 C.militaris:213

F6X0L7              	100.00%		G3JRV8              	100.00%
Bootstrap support for F6X0L7 as seed ortholog is 100%.
Bootstrap support for G3JRV8 as seed ortholog is 100%.

Group of orthologs #890. Best score 213 bits
Score difference with first non-orthologous sequence - C.intestinalis:213 C.militaris:213

F7A9M5              	100.00%		G3JKI7              	100.00%
Bootstrap support for F7A9M5 as seed ortholog is 100%.
Bootstrap support for G3JKI7 as seed ortholog is 100%.

Group of orthologs #891. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 C.militaris:212

H2XQS5              	100.00%		G3JNC8              	100.00%
F7ADF2              	52.05%		
Bootstrap support for H2XQS5 as seed ortholog is 100%.
Bootstrap support for G3JNC8 as seed ortholog is 100%.

Group of orthologs #892. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 C.militaris:212

F6QQ08              	100.00%		G3JAU3              	100.00%
Bootstrap support for F6QQ08 as seed ortholog is 100%.
Bootstrap support for G3JAU3 as seed ortholog is 100%.

Group of orthologs #893. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:79

F6S2W5              	100.00%		G3JAF1              	100.00%
Bootstrap support for F6S2W5 as seed ortholog is 99%.
Bootstrap support for G3JAF1 as seed ortholog is 99%.

Group of orthologs #894. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.militaris:212

F6WJQ9              	100.00%		G3JRK5              	100.00%
Bootstrap support for F6WJQ9 as seed ortholog is 99%.
Bootstrap support for G3JRK5 as seed ortholog is 100%.

Group of orthologs #895. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 C.militaris:212

F7A955              	100.00%		G3JS61              	100.00%
Bootstrap support for F7A955 as seed ortholog is 100%.
Bootstrap support for G3JS61 as seed ortholog is 100%.

Group of orthologs #896. Best score 212 bits
Score difference with first non-orthologous sequence - C.intestinalis:212 C.militaris:212

H2Y0S6              	100.00%		G3JQW1              	100.00%
Bootstrap support for H2Y0S6 as seed ortholog is 100%.
Bootstrap support for G3JQW1 as seed ortholog is 100%.

Group of orthologs #897. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 C.militaris:211

F6TBF9              	100.00%		G3JPU8              	100.00%
Bootstrap support for F6TBF9 as seed ortholog is 100%.
Bootstrap support for G3JPU8 as seed ortholog is 100%.

Group of orthologs #898. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:211 C.militaris:144

F6Z0E0              	100.00%		G3JIC9              	100.00%
Bootstrap support for F6Z0E0 as seed ortholog is 100%.
Bootstrap support for G3JIC9 as seed ortholog is 99%.

Group of orthologs #899. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 C.militaris:85

H2XS14              	100.00%		G3JET8              	100.00%
Bootstrap support for H2XS14 as seed ortholog is 56%.
Alternative seed ortholog is F6X3X4 (6 bits away from this cluster)
Bootstrap support for G3JET8 as seed ortholog is 99%.

Group of orthologs #900. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:211

H2XZG7              	100.00%		G3JCX0              	100.00%
Bootstrap support for H2XZG7 as seed ortholog is 99%.
Bootstrap support for G3JCX0 as seed ortholog is 100%.

Group of orthologs #901. Best score 211 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.militaris:211

H2XT98              	100.00%		G3JL28              	100.00%
Bootstrap support for H2XT98 as seed ortholog is 99%.
Bootstrap support for G3JL28 as seed ortholog is 100%.

Group of orthologs #902. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 C.militaris:210

F6SGU7              	100.00%		G3JKQ1              	100.00%
H2Y279              	8.25%		
Bootstrap support for F6SGU7 as seed ortholog is 100%.
Bootstrap support for G3JKQ1 as seed ortholog is 100%.

Group of orthologs #903. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 C.militaris:210

F6WY47              	100.00%		G3JJY9              	100.00%
Bootstrap support for F6WY47 as seed ortholog is 99%.
Bootstrap support for G3JJY9 as seed ortholog is 100%.

Group of orthologs #904. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:73

F6XWG9              	100.00%		G3JLV1              	100.00%
Bootstrap support for F6XWG9 as seed ortholog is 100%.
Bootstrap support for G3JLV1 as seed ortholog is 99%.

Group of orthologs #905. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 C.militaris:210

F7B499              	100.00%		G3JEL9              	100.00%
Bootstrap support for F7B499 as seed ortholog is 100%.
Bootstrap support for G3JEL9 as seed ortholog is 100%.

Group of orthologs #906. Best score 210 bits
Score difference with first non-orthologous sequence - C.intestinalis:210 C.militaris:210

F7AJZ2              	100.00%		G3JR02              	100.00%
Bootstrap support for F7AJZ2 as seed ortholog is 100%.
Bootstrap support for G3JR02 as seed ortholog is 100%.

Group of orthologs #907. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:209 C.militaris:209

F6UMM5              	100.00%		G3J3R2              	100.00%
Bootstrap support for F6UMM5 as seed ortholog is 100%.
Bootstrap support for G3J3R2 as seed ortholog is 100%.

Group of orthologs #908. Best score 209 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 C.militaris:209

F6YCY6              	100.00%		G3JD57              	100.00%
Bootstrap support for F6YCY6 as seed ortholog is 79%.
Bootstrap support for G3JD57 as seed ortholog is 100%.

Group of orthologs #909. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 C.militaris:5

F6WZS8              	100.00%		G3J3P1              	100.00%
Bootstrap support for F6WZS8 as seed ortholog is 100%.
Bootstrap support for G3J3P1 as seed ortholog is 42%.
Alternative seed ortholog is G3JJ74 (5 bits away from this cluster)

Group of orthologs #910. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 C.militaris:208

F6WJQ0              	100.00%		G3JGN2              	100.00%
Bootstrap support for F6WJQ0 as seed ortholog is 100%.
Bootstrap support for G3JGN2 as seed ortholog is 100%.

Group of orthologs #911. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:208 C.militaris:208

F7B5Q2              	100.00%		G3J8Q8              	100.00%
Bootstrap support for F7B5Q2 as seed ortholog is 100%.
Bootstrap support for G3J8Q8 as seed ortholog is 100%.

Group of orthologs #912. Best score 208 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:117

H2XQC1              	100.00%		G3JNX3              	100.00%
Bootstrap support for H2XQC1 as seed ortholog is 99%.
Bootstrap support for G3JNX3 as seed ortholog is 99%.

Group of orthologs #913. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:207

F6UA65              	100.00%		G3J6W5              	100.00%
Bootstrap support for F6UA65 as seed ortholog is 100%.
Bootstrap support for G3J6W5 as seed ortholog is 100%.

Group of orthologs #914. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:207

F6SSS9              	100.00%		G3JDG9              	100.00%
Bootstrap support for F6SSS9 as seed ortholog is 100%.
Bootstrap support for G3JDG9 as seed ortholog is 100%.

Group of orthologs #915. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:207

F6PM75              	100.00%		G3JLL4              	100.00%
Bootstrap support for F6PM75 as seed ortholog is 100%.
Bootstrap support for G3JLL4 as seed ortholog is 100%.

Group of orthologs #916. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:207

F6UJI9              	100.00%		G3JJR9              	100.00%
Bootstrap support for F6UJI9 as seed ortholog is 100%.
Bootstrap support for G3JJR9 as seed ortholog is 100%.

Group of orthologs #917. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:87

F6UMT8              	100.00%		G3JLL6              	100.00%
Bootstrap support for F6UMT8 as seed ortholog is 100%.
Bootstrap support for G3JLL6 as seed ortholog is 99%.

Group of orthologs #918. Best score 207 bits
Score difference with first non-orthologous sequence - C.intestinalis:207 C.militaris:207

F7BBQ0              	100.00%		G3JG67              	100.00%
Bootstrap support for F7BBQ0 as seed ortholog is 100%.
Bootstrap support for G3JG67 as seed ortholog is 100%.

Group of orthologs #919. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:206 C.militaris:119

F6SU61              	100.00%		G3J365              	100.00%
Bootstrap support for F6SU61 as seed ortholog is 100%.
Bootstrap support for G3J365 as seed ortholog is 99%.

Group of orthologs #920. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:206 C.militaris:206

F6TLE4              	100.00%		G3JB53              	100.00%
Bootstrap support for F6TLE4 as seed ortholog is 100%.
Bootstrap support for G3JB53 as seed ortholog is 100%.

Group of orthologs #921. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:206 C.militaris:206

F6XNV2              	100.00%		G3JQT2              	100.00%
Bootstrap support for F6XNV2 as seed ortholog is 100%.
Bootstrap support for G3JQT2 as seed ortholog is 100%.

Group of orthologs #922. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:206 C.militaris:206

F7AH61              	100.00%		G3JJY4              	100.00%
Bootstrap support for F7AH61 as seed ortholog is 100%.
Bootstrap support for G3JJY4 as seed ortholog is 100%.

Group of orthologs #923. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:85

F6ZFM9              	100.00%		G3JUM0              	100.00%
Bootstrap support for F6ZFM9 as seed ortholog is 88%.
Bootstrap support for G3JUM0 as seed ortholog is 97%.

Group of orthologs #924. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:206 C.militaris:206

H2XXH1              	100.00%		G3JUB1              	100.00%
Bootstrap support for H2XXH1 as seed ortholog is 100%.
Bootstrap support for G3JUB1 as seed ortholog is 100%.

Group of orthologs #925. Best score 206 bits
Score difference with first non-orthologous sequence - C.intestinalis:206 C.militaris:206

H2Y3D5              	100.00%		G3JSJ1              	100.00%
Bootstrap support for H2Y3D5 as seed ortholog is 100%.
Bootstrap support for G3JSJ1 as seed ortholog is 100%.

Group of orthologs #926. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 C.militaris:205

F6TLE7              	100.00%		G3JIP8              	100.00%
F7BNL5              	19.08%		G3JPV4              	42.78%
Bootstrap support for F6TLE7 as seed ortholog is 100%.
Bootstrap support for G3JIP8 as seed ortholog is 100%.

Group of orthologs #927. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:46

H2XY76              	100.00%		G3J7P1              	100.00%
F6VMY2              	12.93%		
Bootstrap support for H2XY76 as seed ortholog is 99%.
Bootstrap support for G3J7P1 as seed ortholog is 90%.

Group of orthologs #928. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 C.militaris:205

F6UUL4              	100.00%		G3J5A4              	100.00%
Bootstrap support for F6UUL4 as seed ortholog is 100%.
Bootstrap support for G3J5A4 as seed ortholog is 100%.

Group of orthologs #929. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:125

F6QEH2              	100.00%		G3JQX3              	100.00%
Bootstrap support for F6QEH2 as seed ortholog is 99%.
Bootstrap support for G3JQX3 as seed ortholog is 99%.

Group of orthologs #930. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 C.militaris:155

F6UUA2              	100.00%		G3JNN2              	100.00%
Bootstrap support for F6UUA2 as seed ortholog is 100%.
Bootstrap support for G3JNN2 as seed ortholog is 100%.

Group of orthologs #931. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 C.militaris:205

F7BDE0              	100.00%		G3JCY0              	100.00%
Bootstrap support for F7BDE0 as seed ortholog is 100%.
Bootstrap support for G3JCY0 as seed ortholog is 100%.

Group of orthologs #932. Best score 205 bits
Score difference with first non-orthologous sequence - C.intestinalis:205 C.militaris:205

F7AX37              	100.00%		G3JJM9              	100.00%
Bootstrap support for F7AX37 as seed ortholog is 100%.
Bootstrap support for G3JJM9 as seed ortholog is 100%.

Group of orthologs #933. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:22

H2XZ04              	100.00%		G3JFL9              	100.00%
                    	       		G3JB06              	30.19%
Bootstrap support for H2XZ04 as seed ortholog is 99%.
Bootstrap support for G3JFL9 as seed ortholog is 67%.
Alternative seed ortholog is G3JTD1 (22 bits away from this cluster)

Group of orthologs #934. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:85

F6PIZ2              	100.00%		G3JDZ8              	100.00%
Bootstrap support for F6PIZ2 as seed ortholog is 99%.
Bootstrap support for G3JDZ8 as seed ortholog is 96%.

Group of orthologs #935. Best score 204 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:107

F6ZP71              	100.00%		G3JL05              	100.00%
Bootstrap support for F6ZP71 as seed ortholog is 99%.
Bootstrap support for G3JL05 as seed ortholog is 99%.

Group of orthologs #936. Best score 203 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 C.militaris:203

F6RQS4              	100.00%		G3J893              	100.00%
Bootstrap support for F6RQS4 as seed ortholog is 100%.
Bootstrap support for G3J893 as seed ortholog is 100%.

Group of orthologs #937. Best score 203 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 C.militaris:203

F6WNN3              	100.00%		G3JIQ0              	100.00%
Bootstrap support for F6WNN3 as seed ortholog is 100%.
Bootstrap support for G3JIQ0 as seed ortholog is 100%.

Group of orthologs #938. Best score 203 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 C.militaris:203

F7B2L3              	100.00%		G3J8Y1              	100.00%
Bootstrap support for F7B2L3 as seed ortholog is 100%.
Bootstrap support for G3J8Y1 as seed ortholog is 100%.

Group of orthologs #939. Best score 203 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:203

H2XRS8              	100.00%		G3JLU2              	100.00%
Bootstrap support for H2XRS8 as seed ortholog is 97%.
Bootstrap support for G3JLU2 as seed ortholog is 100%.

Group of orthologs #940. Best score 203 bits
Score difference with first non-orthologous sequence - C.intestinalis:203 C.militaris:203

H2XR17              	100.00%		G3JPP7              	100.00%
Bootstrap support for H2XR17 as seed ortholog is 100%.
Bootstrap support for G3JPP7 as seed ortholog is 100%.

Group of orthologs #941. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:52

F6Z465              	100.00%		G3J2T8              	100.00%
                    	       		G3JIR1              	8.46%
Bootstrap support for F6Z465 as seed ortholog is 89%.
Bootstrap support for G3J2T8 as seed ortholog is 84%.

Group of orthologs #942. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:36

F6WMB2              	100.00%		G3J500              	100.00%
Bootstrap support for F6WMB2 as seed ortholog is 93%.
Bootstrap support for G3J500 as seed ortholog is 82%.

Group of orthologs #943. Best score 202 bits
Score difference with first non-orthologous sequence - C.intestinalis:202 C.militaris:202

F6X5U2              	100.00%		G3J488              	100.00%
Bootstrap support for F6X5U2 as seed ortholog is 100%.
Bootstrap support for G3J488 as seed ortholog is 100%.

Group of orthologs #944. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 C.militaris:201

F6X4T0              	100.00%		G3JBG0              	100.00%
Bootstrap support for F6X4T0 as seed ortholog is 100%.
Bootstrap support for G3JBG0 as seed ortholog is 100%.

Group of orthologs #945. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 C.militaris:201

F6YG27              	100.00%		G3JPT8              	100.00%
Bootstrap support for F6YG27 as seed ortholog is 100%.
Bootstrap support for G3JPT8 as seed ortholog is 100%.

Group of orthologs #946. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 C.militaris:77

F6ZRB6              	100.00%		G3JLT2              	100.00%
Bootstrap support for F6ZRB6 as seed ortholog is 100%.
Bootstrap support for G3JLT2 as seed ortholog is 97%.

Group of orthologs #947. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 C.militaris:201

F7B2Q1              	100.00%		G3JMV8              	100.00%
Bootstrap support for F7B2Q1 as seed ortholog is 100%.
Bootstrap support for G3JMV8 as seed ortholog is 100%.

Group of orthologs #948. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:201 C.militaris:201

H2XWD3              	100.00%		G3JB27              	100.00%
Bootstrap support for H2XWD3 as seed ortholog is 100%.
Bootstrap support for G3JB27 as seed ortholog is 100%.

Group of orthologs #949. Best score 201 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:47

Q86SD3              	100.00%		G3JRH0              	100.00%
Bootstrap support for Q86SD3 as seed ortholog is 96%.
Bootstrap support for G3JRH0 as seed ortholog is 88%.

Group of orthologs #950. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 C.militaris:200

F6WBE1              	100.00%		G3J5D3              	100.00%
Bootstrap support for F6WBE1 as seed ortholog is 100%.
Bootstrap support for G3J5D3 as seed ortholog is 100%.

Group of orthologs #951. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 C.militaris:200

F6YIJ5              	100.00%		G3J6C5              	100.00%
Bootstrap support for F6YIJ5 as seed ortholog is 100%.
Bootstrap support for G3J6C5 as seed ortholog is 100%.

Group of orthologs #952. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 C.militaris:200

F6Z5V2              	100.00%		G3JI70              	100.00%
Bootstrap support for F6Z5V2 as seed ortholog is 100%.
Bootstrap support for G3JI70 as seed ortholog is 100%.

Group of orthologs #953. Best score 200 bits
Score difference with first non-orthologous sequence - C.intestinalis:200 C.militaris:116

F7B3M4              	100.00%		G3JD37              	100.00%
Bootstrap support for F7B3M4 as seed ortholog is 100%.
Bootstrap support for G3JD37 as seed ortholog is 100%.

Group of orthologs #954. Best score 199 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 C.militaris:199

F6X5M5              	100.00%		G3J9S2              	100.00%
Bootstrap support for F6X5M5 as seed ortholog is 100%.
Bootstrap support for G3J9S2 as seed ortholog is 100%.

Group of orthologs #955. Best score 199 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 C.militaris:199

F7B376              	100.00%		G3J442              	100.00%
Bootstrap support for F7B376 as seed ortholog is 100%.
Bootstrap support for G3J442 as seed ortholog is 100%.

Group of orthologs #956. Best score 199 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:199

F7BMB7              	100.00%		G3J6Q0              	100.00%
Bootstrap support for F7BMB7 as seed ortholog is 99%.
Bootstrap support for G3J6Q0 as seed ortholog is 100%.

Group of orthologs #957. Best score 199 bits
Score difference with first non-orthologous sequence - C.intestinalis:199 C.militaris:199

F7AEP2              	100.00%		G3JKV7              	100.00%
Bootstrap support for F7AEP2 as seed ortholog is 100%.
Bootstrap support for G3JKV7 as seed ortholog is 100%.

Group of orthologs #958. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 C.militaris:120

F7AMQ9              	100.00%		G3JH63              	100.00%
F6XJ57              	6.57%		
Bootstrap support for F7AMQ9 as seed ortholog is 100%.
Bootstrap support for G3JH63 as seed ortholog is 99%.

Group of orthologs #959. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 C.militaris:198

F6UE24              	100.00%		G3J5T7              	100.00%
Bootstrap support for F6UE24 as seed ortholog is 100%.
Bootstrap support for G3J5T7 as seed ortholog is 100%.

Group of orthologs #960. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 C.militaris:198

F7B4P8              	100.00%		G3JCB6              	100.00%
Bootstrap support for F7B4P8 as seed ortholog is 100%.
Bootstrap support for G3JCB6 as seed ortholog is 100%.

Group of orthologs #961. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:127

H2XNZ7              	100.00%		G3JHC2              	100.00%
Bootstrap support for H2XNZ7 as seed ortholog is 100%.
Bootstrap support for G3JHC2 as seed ortholog is 100%.

Group of orthologs #962. Best score 198 bits
Score difference with first non-orthologous sequence - C.intestinalis:198 C.militaris:198

I6L7H7              	100.00%		G3JLE9              	100.00%
Bootstrap support for I6L7H7 as seed ortholog is 100%.
Bootstrap support for G3JLE9 as seed ortholog is 100%.

Group of orthologs #963. Best score 197 bits
Score difference with first non-orthologous sequence - C.intestinalis:197 C.militaris:197

F6R7I5              	100.00%		G3JEU0              	100.00%
Bootstrap support for F6R7I5 as seed ortholog is 100%.
Bootstrap support for G3JEU0 as seed ortholog is 100%.

Group of orthologs #964. Best score 197 bits
Score difference with first non-orthologous sequence - C.intestinalis:197 C.militaris:197

F6R2V7              	100.00%		G3JH89              	100.00%
Bootstrap support for F6R2V7 as seed ortholog is 100%.
Bootstrap support for G3JH89 as seed ortholog is 100%.

Group of orthologs #965. Best score 197 bits
Score difference with first non-orthologous sequence - C.intestinalis:197 C.militaris:197

H2XUS4              	100.00%		G3JA96              	100.00%
Bootstrap support for H2XUS4 as seed ortholog is 100%.
Bootstrap support for G3JA96 as seed ortholog is 100%.

Group of orthologs #966. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F7A4H3              	100.00%		G3JUM8              	100.00%
F6PLF9              	54.90%		
F6PZN0              	50.75%		
F6U2Q6              	39.95%		
F6WSS1              	13.07%		
Bootstrap support for F7A4H3 as seed ortholog is 100%.
Bootstrap support for G3JUM8 as seed ortholog is 100%.

Group of orthologs #967. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F6RKQ2              	100.00%		G3J835              	100.00%
Bootstrap support for F6RKQ2 as seed ortholog is 100%.
Bootstrap support for G3J835 as seed ortholog is 100%.

Group of orthologs #968. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F6SSP8              	100.00%		G3JLG1              	100.00%
Bootstrap support for F6SSP8 as seed ortholog is 100%.
Bootstrap support for G3JLG1 as seed ortholog is 100%.

Group of orthologs #969. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F6TB52              	100.00%		G3JKQ2              	100.00%
Bootstrap support for F6TB52 as seed ortholog is 100%.
Bootstrap support for G3JKQ2 as seed ortholog is 100%.

Group of orthologs #970. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F6YSM6              	100.00%		G3JFY8              	100.00%
Bootstrap support for F6YSM6 as seed ortholog is 100%.
Bootstrap support for G3JFY8 as seed ortholog is 100%.

Group of orthologs #971. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F6TQT4              	100.00%		G3JSV8              	100.00%
Bootstrap support for F6TQT4 as seed ortholog is 100%.
Bootstrap support for G3JSV8 as seed ortholog is 100%.

Group of orthologs #972. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

F7B1W3              	100.00%		G3JEN8              	100.00%
Bootstrap support for F7B1W3 as seed ortholog is 100%.
Bootstrap support for G3JEN8 as seed ortholog is 100%.

Group of orthologs #973. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:39

F6ZGS5              	100.00%		G3JPH1              	100.00%
Bootstrap support for F6ZGS5 as seed ortholog is 99%.
Bootstrap support for G3JPH1 as seed ortholog is 89%.

Group of orthologs #974. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:65

H2XPL6              	100.00%		G3JF49              	100.00%
Bootstrap support for H2XPL6 as seed ortholog is 98%.
Bootstrap support for G3JF49 as seed ortholog is 96%.

Group of orthologs #975. Best score 196 bits
Score difference with first non-orthologous sequence - C.intestinalis:196 C.militaris:196

H2XSU1              	100.00%		G3JL25              	100.00%
Bootstrap support for H2XSU1 as seed ortholog is 100%.
Bootstrap support for G3JL25 as seed ortholog is 100%.

Group of orthologs #976. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:49

F6QI05              	100.00%		G3J3S5              	100.00%
Bootstrap support for F6QI05 as seed ortholog is 99%.
Bootstrap support for G3J3S5 as seed ortholog is 100%.

Group of orthologs #977. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:195 C.militaris:195

F6QS20              	100.00%		G3JL86              	100.00%
Bootstrap support for F6QS20 as seed ortholog is 100%.
Bootstrap support for G3JL86 as seed ortholog is 100%.

Group of orthologs #978. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:195 C.militaris:54

F6U019              	100.00%		G3JKQ0              	100.00%
Bootstrap support for F6U019 as seed ortholog is 100%.
Bootstrap support for G3JKQ0 as seed ortholog is 92%.

Group of orthologs #979. Best score 195 bits
Score difference with first non-orthologous sequence - C.intestinalis:195 C.militaris:195

H2Y1D7              	100.00%		G3JF79              	100.00%
Bootstrap support for H2Y1D7 as seed ortholog is 100%.
Bootstrap support for G3JF79 as seed ortholog is 100%.

Group of orthologs #980. Best score 194 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:76

F6RYV9              	100.00%		G3JMK9              	100.00%
                    	       		G3JBZ8              	16.44%
Bootstrap support for F6RYV9 as seed ortholog is 99%.
Bootstrap support for G3JMK9 as seed ortholog is 94%.

Group of orthologs #981. Best score 194 bits
Score difference with first non-orthologous sequence - C.intestinalis:194 C.militaris:194

F6UAP7              	100.00%		G3J5N1              	100.00%
Bootstrap support for F6UAP7 as seed ortholog is 100%.
Bootstrap support for G3J5N1 as seed ortholog is 100%.

Group of orthologs #982. Best score 194 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 C.militaris:194

H2XKH3              	100.00%		G3J3G0              	100.00%
Bootstrap support for H2XKH3 as seed ortholog is 64%.
Alternative seed ortholog is F6T453 (12 bits away from this cluster)
Bootstrap support for G3J3G0 as seed ortholog is 100%.

Group of orthologs #983. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.militaris:193

F6VJT7              	100.00%		G3J864              	100.00%
F6SF16              	100.00%		G3JPK2              	100.00%
F7BLJ0              	34.85%		G3JQL0              	20.63%
                    	       		G3JCE7              	17.27%
                    	       		G3JL69              	14.78%
Bootstrap support for F6VJT7 as seed ortholog is 100%.
Bootstrap support for F6SF16 as seed ortholog is 100%.
Bootstrap support for G3J864 as seed ortholog is 100%.
Bootstrap support for G3JPK2 as seed ortholog is 100%.

Group of orthologs #984. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.militaris:193

F6XXF0              	100.00%		G3J773              	100.00%
Bootstrap support for F6XXF0 as seed ortholog is 100%.
Bootstrap support for G3J773 as seed ortholog is 100%.

Group of orthologs #985. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.militaris:193

F7BDS7              	100.00%		G3J3L9              	100.00%
Bootstrap support for F7BDS7 as seed ortholog is 100%.
Bootstrap support for G3J3L9 as seed ortholog is 100%.

Group of orthologs #986. Best score 193 bits
Score difference with first non-orthologous sequence - C.intestinalis:193 C.militaris:193

F7AD97              	100.00%		G3JCS9              	100.00%
Bootstrap support for F7AD97 as seed ortholog is 100%.
Bootstrap support for G3JCS9 as seed ortholog is 100%.

Group of orthologs #987. Best score 192 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.militaris:53

F6PH64              	100.00%		G3JHW8              	100.00%
Bootstrap support for F6PH64 as seed ortholog is 75%.
Bootstrap support for G3JHW8 as seed ortholog is 80%.

Group of orthologs #988. Best score 192 bits
Score difference with first non-orthologous sequence - C.intestinalis:192 C.militaris:192

F6UK51              	100.00%		G3JB38              	100.00%
Bootstrap support for F6UK51 as seed ortholog is 100%.
Bootstrap support for G3JB38 as seed ortholog is 100%.

Group of orthologs #989. Best score 192 bits
Score difference with first non-orthologous sequence - C.intestinalis:192 C.militaris:192

F6PP61              	100.00%		G3JLP0              	100.00%
Bootstrap support for F6PP61 as seed ortholog is 100%.
Bootstrap support for G3JLP0 as seed ortholog is 100%.

Group of orthologs #990. Best score 192 bits
Score difference with first non-orthologous sequence - C.intestinalis:192 C.militaris:192

H2XQ34              	100.00%		G3JFH2              	100.00%
Bootstrap support for H2XQ34 as seed ortholog is 100%.
Bootstrap support for G3JFH2 as seed ortholog is 100%.

Group of orthologs #991. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:191

F6Y6X7              	100.00%		G3J3G6              	100.00%
Bootstrap support for F6Y6X7 as seed ortholog is 100%.
Bootstrap support for G3J3G6 as seed ortholog is 100%.

Group of orthologs #992. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:150 C.militaris:191

F6QDG1              	100.00%		G3JKS9              	100.00%
Bootstrap support for F6QDG1 as seed ortholog is 99%.
Bootstrap support for G3JKS9 as seed ortholog is 100%.

Group of orthologs #993. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:191

F6SA18              	100.00%		G3JQS7              	100.00%
Bootstrap support for F6SA18 as seed ortholog is 100%.
Bootstrap support for G3JQS7 as seed ortholog is 100%.

Group of orthologs #994. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:191

F6ZN66              	100.00%		G3JL31              	100.00%
Bootstrap support for F6ZN66 as seed ortholog is 100%.
Bootstrap support for G3JL31 as seed ortholog is 100%.

Group of orthologs #995. Best score 191 bits
Score difference with first non-orthologous sequence - C.intestinalis:191 C.militaris:191

I6L212              	100.00%		G3JFE3              	100.00%
Bootstrap support for I6L212 as seed ortholog is 100%.
Bootstrap support for G3JFE3 as seed ortholog is 100%.

Group of orthologs #996. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:190 C.militaris:49

F7B670              	100.00%		G3JKJ5              	100.00%
                    	       		G3JJ77              	10.76%
Bootstrap support for F7B670 as seed ortholog is 100%.
Bootstrap support for G3JKJ5 as seed ortholog is 86%.

Group of orthologs #997. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:190

F6PJM3              	100.00%		G3J593              	100.00%
Bootstrap support for F6PJM3 as seed ortholog is 87%.
Bootstrap support for G3J593 as seed ortholog is 100%.

Group of orthologs #998. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 C.militaris:190

F6PR16              	100.00%		G3JBT8              	100.00%
Bootstrap support for F6PR16 as seed ortholog is 84%.
Bootstrap support for G3JBT8 as seed ortholog is 100%.

Group of orthologs #999. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:190 C.militaris:190

F6QBM2              	100.00%		G3JBU5              	100.00%
Bootstrap support for F6QBM2 as seed ortholog is 100%.
Bootstrap support for G3JBU5 as seed ortholog is 100%.

Group of orthologs #1000. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:190 C.militaris:190

F6UWK1              	100.00%		G3J8B4              	100.00%
Bootstrap support for F6UWK1 as seed ortholog is 100%.
Bootstrap support for G3J8B4 as seed ortholog is 100%.

Group of orthologs #1001. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:190 C.militaris:190

F6Y089              	100.00%		G3JD96              	100.00%
Bootstrap support for F6Y089 as seed ortholog is 100%.
Bootstrap support for G3JD96 as seed ortholog is 100%.

Group of orthologs #1002. Best score 190 bits
Score difference with first non-orthologous sequence - C.intestinalis:190 C.militaris:190

F7A1S8              	100.00%		G3JBB9              	100.00%
Bootstrap support for F7A1S8 as seed ortholog is 100%.
Bootstrap support for G3JBB9 as seed ortholog is 100%.

Group of orthologs #1003. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:38

F6XXW0              	100.00%		G3JAP1              	100.00%
F6X159              	15.06%		
F7BJ92              	10.42%		
Bootstrap support for F6XXW0 as seed ortholog is 90%.
Bootstrap support for G3JAP1 as seed ortholog is 77%.

Group of orthologs #1004. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:188

F6RD78              	100.00%		G3JIS5              	100.00%
                    	       		G3J4M9              	20.75%
Bootstrap support for F6RD78 as seed ortholog is 97%.
Bootstrap support for G3JIS5 as seed ortholog is 100%.

Group of orthologs #1005. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 C.militaris:84

H2Y0X5              	100.00%		G3J8G0              	100.00%
Bootstrap support for H2Y0X5 as seed ortholog is 100%.
Bootstrap support for G3J8G0 as seed ortholog is 99%.

Group of orthologs #1006. Best score 188 bits
Score difference with first non-orthologous sequence - C.intestinalis:188 C.militaris:188

F7BP62              	100.00%		G3JT95              	100.00%
Bootstrap support for F7BP62 as seed ortholog is 100%.
Bootstrap support for G3JT95 as seed ortholog is 100%.

Group of orthologs #1007. Best score 187 bits
Score difference with first non-orthologous sequence - C.intestinalis:187 C.militaris:187

F6VII3              	100.00%		G3J2S6              	100.00%
Bootstrap support for F6VII3 as seed ortholog is 100%.
Bootstrap support for G3J2S6 as seed ortholog is 100%.

Group of orthologs #1008. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:186

F6QBE1              	100.00%		G3J697              	100.00%
Bootstrap support for F6QBE1 as seed ortholog is 100%.
Bootstrap support for G3J697 as seed ortholog is 100%.

Group of orthologs #1009. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:186

F6RED0              	100.00%		G3JMB4              	100.00%
Bootstrap support for F6RED0 as seed ortholog is 100%.
Bootstrap support for G3JMB4 as seed ortholog is 100%.

Group of orthologs #1010. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:35

F6W2L5              	100.00%		G3JLE0              	100.00%
Bootstrap support for F6W2L5 as seed ortholog is 100%.
Bootstrap support for G3JLE0 as seed ortholog is 83%.

Group of orthologs #1011. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:186

F6XL41              	100.00%		G3JJT8              	100.00%
Bootstrap support for F6XL41 as seed ortholog is 100%.
Bootstrap support for G3JJT8 as seed ortholog is 100%.

Group of orthologs #1012. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:94

F7BNW5              	100.00%		G3JAU8              	100.00%
Bootstrap support for F7BNW5 as seed ortholog is 100%.
Bootstrap support for G3JAU8 as seed ortholog is 97%.

Group of orthologs #1013. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:186

F7B6W8              	100.00%		G3JCH3              	100.00%
Bootstrap support for F7B6W8 as seed ortholog is 100%.
Bootstrap support for G3JCH3 as seed ortholog is 100%.

Group of orthologs #1014. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:186 C.militaris:186

H2XP26              	100.00%		G3JH05              	100.00%
Bootstrap support for H2XP26 as seed ortholog is 100%.
Bootstrap support for G3JH05 as seed ortholog is 100%.

Group of orthologs #1015. Best score 186 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 C.militaris:186

H2XZ35              	100.00%		G3J9D2              	100.00%
Bootstrap support for H2XZ35 as seed ortholog is 99%.
Bootstrap support for G3J9D2 as seed ortholog is 100%.

Group of orthologs #1016. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.militaris:185

F6RAN6              	100.00%		G3J3T0              	100.00%
Bootstrap support for F6RAN6 as seed ortholog is 100%.
Bootstrap support for G3J3T0 as seed ortholog is 100%.

Group of orthologs #1017. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.militaris:67

F6S0S0              	100.00%		G3JKP4              	100.00%
Bootstrap support for F6S0S0 as seed ortholog is 100%.
Bootstrap support for G3JKP4 as seed ortholog is 93%.

Group of orthologs #1018. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.militaris:185

F6S3G5              	100.00%		G3JKS2              	100.00%
Bootstrap support for F6S3G5 as seed ortholog is 100%.
Bootstrap support for G3JKS2 as seed ortholog is 100%.

Group of orthologs #1019. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.militaris:185

F6Z3S0              	100.00%		G3J751              	100.00%
Bootstrap support for F6Z3S0 as seed ortholog is 100%.
Bootstrap support for G3J751 as seed ortholog is 100%.

Group of orthologs #1020. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:107

H2XMB6              	100.00%		G3J4I4              	100.00%
Bootstrap support for H2XMB6 as seed ortholog is 99%.
Bootstrap support for G3J4I4 as seed ortholog is 99%.

Group of orthologs #1021. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:32

F6XB39              	100.00%		G3JNF1              	100.00%
Bootstrap support for F6XB39 as seed ortholog is 99%.
Bootstrap support for G3JNF1 as seed ortholog is 81%.

Group of orthologs #1022. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:72

F6Z8G0              	100.00%		G3JK87              	100.00%
Bootstrap support for F6Z8G0 as seed ortholog is 87%.
Bootstrap support for G3JK87 as seed ortholog is 98%.

Group of orthologs #1023. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:185

F6ZIP1              	100.00%		G3JNK7              	100.00%
Bootstrap support for F6ZIP1 as seed ortholog is 85%.
Bootstrap support for G3JNK7 as seed ortholog is 100%.

Group of orthologs #1024. Best score 185 bits
Score difference with first non-orthologous sequence - C.intestinalis:185 C.militaris:185

H2XYW2              	100.00%		G3JQJ6              	100.00%
Bootstrap support for H2XYW2 as seed ortholog is 100%.
Bootstrap support for G3JQJ6 as seed ortholog is 100%.

Group of orthologs #1025. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 C.militaris:184

F6PPC0              	100.00%		G3JCX3              	100.00%
Bootstrap support for F6PPC0 as seed ortholog is 100%.
Bootstrap support for G3JCX3 as seed ortholog is 100%.

Group of orthologs #1026. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 C.militaris:184

F6THX7              	100.00%		G3JKE2              	100.00%
Bootstrap support for F6THX7 as seed ortholog is 100%.
Bootstrap support for G3JKE2 as seed ortholog is 100%.

Group of orthologs #1027. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:184 C.militaris:184

F6XPS9              	100.00%		G3JHY6              	100.00%
Bootstrap support for F6XPS9 as seed ortholog is 100%.
Bootstrap support for G3JHY6 as seed ortholog is 100%.

Group of orthologs #1028. Best score 184 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:74

F7API1              	100.00%		G3JM52              	100.00%
Bootstrap support for F7API1 as seed ortholog is 99%.
Bootstrap support for G3JM52 as seed ortholog is 96%.

Group of orthologs #1029. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:38

F6Y403              	100.00%		G3J834              	100.00%
H2XPY5              	21.65%		G3JHE4              	42.66%
                    	       		G3JMA3              	34.70%
                    	       		G3JMY5              	5.72%
Bootstrap support for F6Y403 as seed ortholog is 93%.
Bootstrap support for G3J834 as seed ortholog is 80%.

Group of orthologs #1030. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

H2XZ54              	100.00%		G3JET7              	100.00%
F6Y5Q3              	21.25%		
Bootstrap support for H2XZ54 as seed ortholog is 100%.
Bootstrap support for G3JET7 as seed ortholog is 100%.

Group of orthologs #1031. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F6R4T5              	100.00%		G3JKH2              	100.00%
Bootstrap support for F6R4T5 as seed ortholog is 100%.
Bootstrap support for G3JKH2 as seed ortholog is 100%.

Group of orthologs #1032. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F6XYV2              	100.00%		G3J7Y8              	100.00%
Bootstrap support for F6XYV2 as seed ortholog is 100%.
Bootstrap support for G3J7Y8 as seed ortholog is 100%.

Group of orthologs #1033. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F6YMT8              	100.00%		G3J6R9              	100.00%
Bootstrap support for F6YMT8 as seed ortholog is 100%.
Bootstrap support for G3J6R9 as seed ortholog is 100%.

Group of orthologs #1034. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F6UA87              	100.00%		G3JQ46              	100.00%
Bootstrap support for F6UA87 as seed ortholog is 100%.
Bootstrap support for G3JQ46 as seed ortholog is 100%.

Group of orthologs #1035. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F6V766              	100.00%		G3JRK7              	100.00%
Bootstrap support for F6V766 as seed ortholog is 100%.
Bootstrap support for G3JRK7 as seed ortholog is 100%.

Group of orthologs #1036. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F7AP04              	100.00%		G3JFU6              	100.00%
Bootstrap support for F7AP04 as seed ortholog is 100%.
Bootstrap support for G3JFU6 as seed ortholog is 100%.

Group of orthologs #1037. Best score 183 bits
Score difference with first non-orthologous sequence - C.intestinalis:183 C.militaris:183

F6ZL64              	100.00%		G3JRU3              	100.00%
Bootstrap support for F6ZL64 as seed ortholog is 100%.
Bootstrap support for G3JRU3 as seed ortholog is 100%.

Group of orthologs #1038. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:182

F6QE62              	100.00%		G3JEZ2              	100.00%
Bootstrap support for F6QE62 as seed ortholog is 100%.
Bootstrap support for G3JEZ2 as seed ortholog is 100%.

Group of orthologs #1039. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:182

F6WYI2              	100.00%		G3J3T5              	100.00%
Bootstrap support for F6WYI2 as seed ortholog is 100%.
Bootstrap support for G3J3T5 as seed ortholog is 100%.

Group of orthologs #1040. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:122

F6TCF8              	100.00%		G3JE57              	100.00%
Bootstrap support for F6TCF8 as seed ortholog is 100%.
Bootstrap support for G3JE57 as seed ortholog is 100%.

Group of orthologs #1041. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:182

F7A2R6              	100.00%		G3J6S9              	100.00%
Bootstrap support for F7A2R6 as seed ortholog is 100%.
Bootstrap support for G3J6S9 as seed ortholog is 100%.

Group of orthologs #1042. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:182

F6W170              	100.00%		G3JH65              	100.00%
Bootstrap support for F6W170 as seed ortholog is 99%.
Bootstrap support for G3JH65 as seed ortholog is 100%.

Group of orthologs #1043. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:182

F6YI87              	100.00%		G3JF23              	100.00%
Bootstrap support for F6YI87 as seed ortholog is 100%.
Bootstrap support for G3JF23 as seed ortholog is 100%.

Group of orthologs #1044. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:182

F6UUI1              	100.00%		G3JNN9              	100.00%
Bootstrap support for F6UUI1 as seed ortholog is 99%.
Bootstrap support for G3JNN9 as seed ortholog is 100%.

Group of orthologs #1045. Best score 182 bits
Score difference with first non-orthologous sequence - C.intestinalis:182 C.militaris:182

F6SW03              	100.00%		G3JU63              	100.00%
Bootstrap support for F6SW03 as seed ortholog is 100%.
Bootstrap support for G3JU63 as seed ortholog is 100%.

Group of orthologs #1046. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 C.militaris:181

F6Q9P1              	100.00%		G3JD92              	100.00%
Bootstrap support for F6Q9P1 as seed ortholog is 100%.
Bootstrap support for G3JD92 as seed ortholog is 100%.

Group of orthologs #1047. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 C.militaris:55

F6WFK7              	100.00%		G3J320              	100.00%
Bootstrap support for F6WFK7 as seed ortholog is 99%.
Bootstrap support for G3J320 as seed ortholog is 88%.

Group of orthologs #1048. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:102

F6WCV2              	100.00%		G3J3G7              	100.00%
Bootstrap support for F6WCV2 as seed ortholog is 99%.
Bootstrap support for G3J3G7 as seed ortholog is 99%.

Group of orthologs #1049. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 C.militaris:181

F6QZY3              	100.00%		G3JJR8              	100.00%
Bootstrap support for F6QZY3 as seed ortholog is 100%.
Bootstrap support for G3JJR8 as seed ortholog is 100%.

Group of orthologs #1050. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 C.militaris:181

F6VF91              	100.00%		G3JFA0              	100.00%
Bootstrap support for F6VF91 as seed ortholog is 100%.
Bootstrap support for G3JFA0 as seed ortholog is 100%.

Group of orthologs #1051. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 C.militaris:181

F6Z541              	100.00%		G3J8Q0              	100.00%
Bootstrap support for F6Z541 as seed ortholog is 100%.
Bootstrap support for G3J8Q0 as seed ortholog is 100%.

Group of orthologs #1052. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 C.militaris:83

F6VBG8              	100.00%		G3JII2              	100.00%
Bootstrap support for F6VBG8 as seed ortholog is 100%.
Bootstrap support for G3JII2 as seed ortholog is 96%.

Group of orthologs #1053. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:181 C.militaris:181

H2XVN4              	100.00%		G3J9Y7              	100.00%
Bootstrap support for H2XVN4 as seed ortholog is 100%.
Bootstrap support for G3J9Y7 as seed ortholog is 100%.

Group of orthologs #1054. Best score 181 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:130

H2Y233              	100.00%		G3JQ15              	100.00%
Bootstrap support for H2Y233 as seed ortholog is 100%.
Bootstrap support for G3JQ15 as seed ortholog is 100%.

Group of orthologs #1055. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:180 C.militaris:180

F7B4M8              	100.00%		G3J5Q9              	100.00%
F7BE27              	31.48%		
F6Y8L3              	30.60%		
F6YI37              	15.23%		
F6ST69              	13.76%		
Bootstrap support for F7B4M8 as seed ortholog is 100%.
Bootstrap support for G3J5Q9 as seed ortholog is 100%.

Group of orthologs #1056. Best score 180 bits
Score difference with first non-orthologous sequence - C.intestinalis:180 C.militaris:180

F6U5W6              	100.00%		G3JPS1              	100.00%
Bootstrap support for F6U5W6 as seed ortholog is 100%.
Bootstrap support for G3JPS1 as seed ortholog is 100%.

Group of orthologs #1057. Best score 179 bits
Score difference with first non-orthologous sequence - C.intestinalis:179 C.militaris:179

F6T7J7              	100.00%		G3JD86              	100.00%
Bootstrap support for F6T7J7 as seed ortholog is 100%.
Bootstrap support for G3JD86 as seed ortholog is 100%.

Group of orthologs #1058. Best score 179 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:115

F6SFM0              	100.00%		G3JHB0              	100.00%
Bootstrap support for F6SFM0 as seed ortholog is 98%.
Bootstrap support for G3JHB0 as seed ortholog is 99%.

Group of orthologs #1059. Best score 179 bits
Score difference with first non-orthologous sequence - C.intestinalis:179 C.militaris:179

F6W3C3              	100.00%		G3JUK5              	100.00%
Bootstrap support for F6W3C3 as seed ortholog is 100%.
Bootstrap support for G3JUK5 as seed ortholog is 100%.

Group of orthologs #1060. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:178

F6WXJ5              	100.00%		G3J7P3              	100.00%
Bootstrap support for F6WXJ5 as seed ortholog is 100%.
Bootstrap support for G3J7P3 as seed ortholog is 100%.

Group of orthologs #1061. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:178

F7BA12              	100.00%		G3J351              	100.00%
Bootstrap support for F7BA12 as seed ortholog is 99%.
Bootstrap support for G3J351 as seed ortholog is 100%.

Group of orthologs #1062. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:122

F6YLC1              	100.00%		G3JFN5              	100.00%
Bootstrap support for F6YLC1 as seed ortholog is 100%.
Bootstrap support for G3JFN5 as seed ortholog is 99%.

Group of orthologs #1063. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:178

F7ACM5              	100.00%		G3JCW0              	100.00%
Bootstrap support for F7ACM5 as seed ortholog is 100%.
Bootstrap support for G3JCW0 as seed ortholog is 100%.

Group of orthologs #1064. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:178

F6Y6W3              	100.00%		G3JTM1              	100.00%
Bootstrap support for F6Y6W3 as seed ortholog is 100%.
Bootstrap support for G3JTM1 as seed ortholog is 100%.

Group of orthologs #1065. Best score 178 bits
Score difference with first non-orthologous sequence - C.intestinalis:178 C.militaris:178

H2Y240              	100.00%		G3JED9              	100.00%
Bootstrap support for H2Y240 as seed ortholog is 100%.
Bootstrap support for G3JED9 as seed ortholog is 100%.

Group of orthologs #1066. Best score 177 bits
Score difference with first non-orthologous sequence - C.intestinalis:177 C.militaris:177

F6QCQ5              	100.00%		G3JF74              	100.00%
Bootstrap support for F6QCQ5 as seed ortholog is 100%.
Bootstrap support for G3JF74 as seed ortholog is 100%.

Group of orthologs #1067. Best score 177 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 C.militaris:105

F6VN10              	100.00%		G3J932              	100.00%
Bootstrap support for F6VN10 as seed ortholog is 50%.
Alternative seed ortholog is F6UHS2 (1 bits away from this cluster)
Bootstrap support for G3J932 as seed ortholog is 99%.

Group of orthologs #1068. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:22

F6YPB8              	100.00%		G3JMM8              	100.00%
F6SD56              	100.00%		G3JI12              	100.00%
F6YLY7              	45.83%		
F6SNY7              	24.25%		
F6WT59              	21.24%		
F6SNZ5              	6.55%		
Bootstrap support for F6YPB8 as seed ortholog is 100%.
Bootstrap support for F6SD56 as seed ortholog is 100%.
Bootstrap support for G3JMM8 as seed ortholog is 73%.
Alternative seed ortholog is G3JBJ1 (22 bits away from this cluster)
Bootstrap support for G3JI12 as seed ortholog is 56%.
Alternative seed ortholog is G3JBJ1 (22 bits away from this cluster)

Group of orthologs #1069. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:73

F6PS78              	100.00%		G3J8Z1              	100.00%
L7N0U6              	100.00%		
Bootstrap support for F6PS78 as seed ortholog is 99%.
Bootstrap support for L7N0U6 as seed ortholog is 99%.
Bootstrap support for G3J8Z1 as seed ortholog is 98%.

Group of orthologs #1070. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:18

F6RXW9              	100.00%		G3JAB7              	100.00%
                    	       		G3J4K5              	10.14%
Bootstrap support for F6RXW9 as seed ortholog is 100%.
Bootstrap support for G3JAB7 as seed ortholog is 84%.

Group of orthologs #1071. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 C.militaris:34

F6PIE8              	100.00%		G3JGH0              	100.00%
Bootstrap support for F6PIE8 as seed ortholog is 99%.
Bootstrap support for G3JGH0 as seed ortholog is 79%.

Group of orthologs #1072. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:176

F6ZQX9              	100.00%		G3J2P3              	100.00%
Bootstrap support for F6ZQX9 as seed ortholog is 100%.
Bootstrap support for G3J2P3 as seed ortholog is 100%.

Group of orthologs #1073. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:176

F6TRZ2              	100.00%		G3JJ11              	100.00%
Bootstrap support for F6TRZ2 as seed ortholog is 100%.
Bootstrap support for G3JJ11 as seed ortholog is 100%.

Group of orthologs #1074. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:176

F6REI3              	100.00%		G3JQ26              	100.00%
Bootstrap support for F6REI3 as seed ortholog is 100%.
Bootstrap support for G3JQ26 as seed ortholog is 100%.

Group of orthologs #1075. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:112

F7AA18              	100.00%		G3JKM6              	100.00%
Bootstrap support for F7AA18 as seed ortholog is 100%.
Bootstrap support for G3JKM6 as seed ortholog is 99%.

Group of orthologs #1076. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:176

H2Y0G9              	100.00%		G3J833              	100.00%
Bootstrap support for H2Y0G9 as seed ortholog is 100%.
Bootstrap support for G3J833 as seed ortholog is 100%.

Group of orthologs #1077. Best score 176 bits
Score difference with first non-orthologous sequence - C.intestinalis:176 C.militaris:176

H2XT24              	100.00%		G3JJ93              	100.00%
Bootstrap support for H2XT24 as seed ortholog is 100%.
Bootstrap support for G3JJ93 as seed ortholog is 100%.

Group of orthologs #1078. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:57

F6S569              	100.00%		G3JD94              	100.00%
Bootstrap support for F6S569 as seed ortholog is 97%.
Bootstrap support for G3JD94 as seed ortholog is 99%.

Group of orthologs #1079. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 C.militaris:175

F6VMS4              	100.00%		G3JGB6              	100.00%
Bootstrap support for F6VMS4 as seed ortholog is 100%.
Bootstrap support for G3JGB6 as seed ortholog is 100%.

Group of orthologs #1080. Best score 175 bits
Score difference with first non-orthologous sequence - C.intestinalis:175 C.militaris:175

F7BJZ5              	100.00%		G3JDB4              	100.00%
Bootstrap support for F7BJZ5 as seed ortholog is 100%.
Bootstrap support for G3JDB4 as seed ortholog is 100%.

Group of orthologs #1081. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 C.militaris:174

F6S2C6              	100.00%		G3JHC5              	100.00%
Bootstrap support for F6S2C6 as seed ortholog is 100%.
Bootstrap support for G3JHC5 as seed ortholog is 100%.

Group of orthologs #1082. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.militaris:174

F7A5W3              	100.00%		G3J6N2              	100.00%
Bootstrap support for F7A5W3 as seed ortholog is 95%.
Bootstrap support for G3J6N2 as seed ortholog is 100%.

Group of orthologs #1083. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 C.militaris:174

F6UIW1              	100.00%		G3JJU3              	100.00%
Bootstrap support for F6UIW1 as seed ortholog is 100%.
Bootstrap support for G3JJU3 as seed ortholog is 100%.

Group of orthologs #1084. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:174 C.militaris:174

F7AER5              	100.00%		G3JEC7              	100.00%
Bootstrap support for F7AER5 as seed ortholog is 100%.
Bootstrap support for G3JEC7 as seed ortholog is 100%.

Group of orthologs #1085. Best score 174 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:118

H2XWF2              	100.00%		G3JDG0              	100.00%
Bootstrap support for H2XWF2 as seed ortholog is 99%.
Bootstrap support for G3JDG0 as seed ortholog is 99%.

Group of orthologs #1086. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:173

Q5VHU5              	100.00%		G3JT32              	100.00%
Q5VHU3              	31.16%		G3JJK6              	33.37%
Bootstrap support for Q5VHU5 as seed ortholog is 99%.
Bootstrap support for G3JT32 as seed ortholog is 100%.

Group of orthologs #1087. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:173

F6SZE1              	100.00%		G3J5U7              	100.00%
Bootstrap support for F6SZE1 as seed ortholog is 100%.
Bootstrap support for G3J5U7 as seed ortholog is 100%.

Group of orthologs #1088. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:173

F6U6L5              	100.00%		G3J947              	100.00%
Bootstrap support for F6U6L5 as seed ortholog is 92%.
Bootstrap support for G3J947 as seed ortholog is 100%.

Group of orthologs #1089. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:173

F6QY42              	100.00%		G3JH50              	100.00%
Bootstrap support for F6QY42 as seed ortholog is 100%.
Bootstrap support for G3JH50 as seed ortholog is 100%.

Group of orthologs #1090. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:173

F6UFA9              	100.00%		G3JD97              	100.00%
Bootstrap support for F6UFA9 as seed ortholog is 100%.
Bootstrap support for G3JD97 as seed ortholog is 100%.

Group of orthologs #1091. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:173

F6UAZ6              	100.00%		G3JJ52              	100.00%
Bootstrap support for F6UAZ6 as seed ortholog is 100%.
Bootstrap support for G3JJ52 as seed ortholog is 100%.

Group of orthologs #1092. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:173

F6ZGT8              	100.00%		G3JUP1              	100.00%
Bootstrap support for F6ZGT8 as seed ortholog is 100%.
Bootstrap support for G3JUP1 as seed ortholog is 100%.

Group of orthologs #1093. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:173

H2XW76              	100.00%		G3JTV9              	100.00%
Bootstrap support for H2XW76 as seed ortholog is 99%.
Bootstrap support for G3JTV9 as seed ortholog is 100%.

Group of orthologs #1094. Best score 173 bits
Score difference with first non-orthologous sequence - C.intestinalis:173 C.militaris:173

H2XZ65              	100.00%		G3JS46              	100.00%
Bootstrap support for H2XZ65 as seed ortholog is 100%.
Bootstrap support for G3JS46 as seed ortholog is 100%.

Group of orthologs #1095. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:172

F6PPH5              	100.00%		G3J360              	100.00%
Bootstrap support for F6PPH5 as seed ortholog is 99%.
Bootstrap support for G3J360 as seed ortholog is 100%.

Group of orthologs #1096. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 C.militaris:172

F6YWB6              	100.00%		G3J432              	100.00%
Bootstrap support for F6YWB6 as seed ortholog is 100%.
Bootstrap support for G3J432 as seed ortholog is 100%.

Group of orthologs #1097. Best score 172 bits
Score difference with first non-orthologous sequence - C.intestinalis:172 C.militaris:172

F6XLK3              	100.00%		G3JPG2              	100.00%
Bootstrap support for F6XLK3 as seed ortholog is 100%.
Bootstrap support for G3JPG2 as seed ortholog is 100%.

Group of orthologs #1098. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

F7B5X2              	100.00%		G3JKT9              	100.00%
                    	       		G3JI57              	9.02%
                    	       		G3J4T5              	5.04%
Bootstrap support for F7B5X2 as seed ortholog is 100%.
Bootstrap support for G3JKT9 as seed ortholog is 100%.

Group of orthologs #1099. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 C.militaris:75

F6X4A8              	100.00%		G3JQ91              	100.00%
F6ZME6              	19.53%		
Bootstrap support for F6X4A8 as seed ortholog is 99%.
Bootstrap support for G3JQ91 as seed ortholog is 98%.

Group of orthologs #1100. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

F6YGG6              	100.00%		G3J315              	100.00%
Bootstrap support for F6YGG6 as seed ortholog is 100%.
Bootstrap support for G3J315 as seed ortholog is 100%.

Group of orthologs #1101. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

F7A429              	100.00%		G3J3L5              	100.00%
Bootstrap support for F7A429 as seed ortholog is 100%.
Bootstrap support for G3J3L5 as seed ortholog is 100%.

Group of orthologs #1102. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:18

F6X8B5              	100.00%		G3JHP4              	100.00%
Bootstrap support for F6X8B5 as seed ortholog is 100%.
Bootstrap support for G3JHP4 as seed ortholog is 64%.
Alternative seed ortholog is G3JN47 (18 bits away from this cluster)

Group of orthologs #1103. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

F6Y0M4              	100.00%		G3JQC1              	100.00%
Bootstrap support for F6Y0M4 as seed ortholog is 100%.
Bootstrap support for G3JQC1 as seed ortholog is 100%.

Group of orthologs #1104. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

H2Y2N2              	100.00%		G3J482              	100.00%
Bootstrap support for H2Y2N2 as seed ortholog is 100%.
Bootstrap support for G3J482 as seed ortholog is 100%.

Group of orthologs #1105. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

F7A4X2              	100.00%		G3JUC8              	100.00%
Bootstrap support for F7A4X2 as seed ortholog is 100%.
Bootstrap support for G3JUC8 as seed ortholog is 100%.

Group of orthologs #1106. Best score 171 bits
Score difference with first non-orthologous sequence - C.intestinalis:171 C.militaris:171

H2XSL3              	100.00%		G3JLN6              	100.00%
Bootstrap support for H2XSL3 as seed ortholog is 100%.
Bootstrap support for G3JLN6 as seed ortholog is 100%.

Group of orthologs #1107. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:170

F6Q4Z2              	100.00%		G3J395              	100.00%
Bootstrap support for F6Q4Z2 as seed ortholog is 100%.
Bootstrap support for G3J395 as seed ortholog is 100%.

Group of orthologs #1108. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:170

F6V6F4              	100.00%		G3J4G0              	100.00%
Bootstrap support for F6V6F4 as seed ortholog is 100%.
Bootstrap support for G3J4G0 as seed ortholog is 100%.

Group of orthologs #1109. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:170

F6TL19              	100.00%		G3J8M8              	100.00%
Bootstrap support for F6TL19 as seed ortholog is 100%.
Bootstrap support for G3J8M8 as seed ortholog is 100%.

Group of orthologs #1110. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:117

F6S0N6              	100.00%		G3JEL5              	100.00%
Bootstrap support for F6S0N6 as seed ortholog is 100%.
Bootstrap support for G3JEL5 as seed ortholog is 99%.

Group of orthologs #1111. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:170

F6V8N9              	100.00%		G3JHJ9              	100.00%
Bootstrap support for F6V8N9 as seed ortholog is 100%.
Bootstrap support for G3JHJ9 as seed ortholog is 100%.

Group of orthologs #1112. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:170 C.militaris:170

F6SK91              	100.00%		G3JU53              	100.00%
Bootstrap support for F6SK91 as seed ortholog is 100%.
Bootstrap support for G3JU53 as seed ortholog is 100%.

Group of orthologs #1113. Best score 170 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:170

F7B418              	100.00%		G3JDS3              	100.00%
Bootstrap support for F7B418 as seed ortholog is 90%.
Bootstrap support for G3JDS3 as seed ortholog is 100%.

Group of orthologs #1114. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:169

F7BBQ5              	100.00%		G3JLY2              	100.00%
F6YB01              	47.90%		
Bootstrap support for F7BBQ5 as seed ortholog is 100%.
Bootstrap support for G3JLY2 as seed ortholog is 100%.

Group of orthologs #1115. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:169

F6PN13              	100.00%		G3J9E6              	100.00%
Bootstrap support for F6PN13 as seed ortholog is 100%.
Bootstrap support for G3J9E6 as seed ortholog is 100%.

Group of orthologs #1116. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:169

F6WPS3              	100.00%		G3JA43              	100.00%
Bootstrap support for F6WPS3 as seed ortholog is 100%.
Bootstrap support for G3JA43 as seed ortholog is 100%.

Group of orthologs #1117. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:169

F7BH80              	100.00%		G3J8W5              	100.00%
Bootstrap support for F7BH80 as seed ortholog is 99%.
Bootstrap support for G3J8W5 as seed ortholog is 100%.

Group of orthologs #1118. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:75

F7AHV7              	100.00%		G3JGV5              	100.00%
Bootstrap support for F7AHV7 as seed ortholog is 99%.
Bootstrap support for G3JGV5 as seed ortholog is 98%.

Group of orthologs #1119. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:169

Q4H3E2              	100.00%		G3J2R0              	100.00%
Bootstrap support for Q4H3E2 as seed ortholog is 100%.
Bootstrap support for G3J2R0 as seed ortholog is 100%.

Group of orthologs #1120. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:169

H2XLW7              	100.00%		G3JL89              	100.00%
Bootstrap support for H2XLW7 as seed ortholog is 100%.
Bootstrap support for G3JL89 as seed ortholog is 100%.

Group of orthologs #1121. Best score 169 bits
Score difference with first non-orthologous sequence - C.intestinalis:169 C.militaris:169

H2Y1H7              	100.00%		G3JTW8              	100.00%
Bootstrap support for H2Y1H7 as seed ortholog is 100%.
Bootstrap support for G3JTW8 as seed ortholog is 100%.

Group of orthologs #1122. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:168

F6UTV8              	100.00%		G3JBZ6              	100.00%
F7A0H4              	31.59%		
F6VCE5              	25.94%		
Bootstrap support for F6UTV8 as seed ortholog is 95%.
Bootstrap support for G3JBZ6 as seed ortholog is 100%.

Group of orthologs #1123. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

F6UNA3              	100.00%		G3JNP5              	100.00%
F6QH95              	39.37%		
Bootstrap support for F6UNA3 as seed ortholog is 100%.
Bootstrap support for G3JNP5 as seed ortholog is 100%.

Group of orthologs #1124. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

F6X0N8              	100.00%		G3JTF0              	100.00%
L7N0S6              	86.22%		
Bootstrap support for F6X0N8 as seed ortholog is 100%.
Bootstrap support for G3JTF0 as seed ortholog is 100%.

Group of orthologs #1125. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

H2XYH1              	100.00%		G3JFN1              	100.00%
F7AAN8              	64.39%		
Bootstrap support for H2XYH1 as seed ortholog is 100%.
Bootstrap support for G3JFN1 as seed ortholog is 100%.

Group of orthologs #1126. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

F6V4K8              	100.00%		G3J9X0              	100.00%
Bootstrap support for F6V4K8 as seed ortholog is 100%.
Bootstrap support for G3J9X0 as seed ortholog is 100%.

Group of orthologs #1127. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

F6V437              	100.00%		G3JIQ2              	100.00%
Bootstrap support for F6V437 as seed ortholog is 100%.
Bootstrap support for G3JIQ2 as seed ortholog is 100%.

Group of orthologs #1128. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:30 C.militaris:168

F6W3K8              	100.00%		G3JIF6              	100.00%
Bootstrap support for F6W3K8 as seed ortholog is 84%.
Bootstrap support for G3JIF6 as seed ortholog is 100%.

Group of orthologs #1129. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

F6Y3X0              	100.00%		G3JN11              	100.00%
Bootstrap support for F6Y3X0 as seed ortholog is 100%.
Bootstrap support for G3JN11 as seed ortholog is 100%.

Group of orthologs #1130. Best score 168 bits
Score difference with first non-orthologous sequence - C.intestinalis:168 C.militaris:168

F7BDH7              	100.00%		G3JHG2              	100.00%
Bootstrap support for F7BDH7 as seed ortholog is 100%.
Bootstrap support for G3JHG2 as seed ortholog is 100%.

Group of orthologs #1131. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:167

F7BAF2              	100.00%		G3J668              	100.00%
F6VIT0              	18.30%		
F6QB79              	18.08%		
F6RWK5              	16.44%		
F7AG00              	12.65%		
Bootstrap support for F7BAF2 as seed ortholog is 100%.
Bootstrap support for G3J668 as seed ortholog is 100%.

Group of orthologs #1132. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:104

H2XSA8              	100.00%		G3JMR8              	100.00%
                    	       		G3J2L4              	15.45%
Bootstrap support for H2XSA8 as seed ortholog is 100%.
Bootstrap support for G3JMR8 as seed ortholog is 88%.

Group of orthologs #1133. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:167

F6SM47              	100.00%		G3J396              	100.00%
Bootstrap support for F6SM47 as seed ortholog is 100%.
Bootstrap support for G3J396 as seed ortholog is 100%.

Group of orthologs #1134. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:167

F6UJM5              	100.00%		G3J2S7              	100.00%
Bootstrap support for F6UJM5 as seed ortholog is 100%.
Bootstrap support for G3J2S7 as seed ortholog is 100%.

Group of orthologs #1135. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 C.militaris:54

F6UMK0              	100.00%		G3JPF4              	100.00%
Bootstrap support for F6UMK0 as seed ortholog is 64%.
Alternative seed ortholog is H2Y099 (12 bits away from this cluster)
Bootstrap support for G3JPF4 as seed ortholog is 94%.

Group of orthologs #1136. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:167

F6TIM2              	100.00%		G3JS89              	100.00%
Bootstrap support for F6TIM2 as seed ortholog is 100%.
Bootstrap support for G3JS89 as seed ortholog is 100%.

Group of orthologs #1137. Best score 167 bits
Score difference with first non-orthologous sequence - C.intestinalis:167 C.militaris:167

F6XTV8              	100.00%		G3JJX7              	100.00%
Bootstrap support for F6XTV8 as seed ortholog is 100%.
Bootstrap support for G3JJX7 as seed ortholog is 100%.

Group of orthologs #1138. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6TCT1              	100.00%		G3J957              	100.00%
F6XL93              	24.04%		G3JAC5              	9.20%
Bootstrap support for F6TCT1 as seed ortholog is 100%.
Bootstrap support for G3J957 as seed ortholog is 100%.

Group of orthologs #1139. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6RTW0              	100.00%		G3JIF2              	100.00%
H2XPX9              	22.58%		
Bootstrap support for F6RTW0 as seed ortholog is 100%.
Bootstrap support for G3JIF2 as seed ortholog is 100%.

Group of orthologs #1140. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:74

F6YRX9              	100.00%		G3JU32              	100.00%
F6TK16              	12.05%		
Bootstrap support for F6YRX9 as seed ortholog is 96%.
Bootstrap support for G3JU32 as seed ortholog is 97%.

Group of orthologs #1141. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6V9A1              	100.00%		G3JDQ9              	100.00%
Bootstrap support for F6V9A1 as seed ortholog is 100%.
Bootstrap support for G3JDQ9 as seed ortholog is 100%.

Group of orthologs #1142. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6X0F3              	100.00%		G3JBS6              	100.00%
Bootstrap support for F6X0F3 as seed ortholog is 100%.
Bootstrap support for G3JBS6 as seed ortholog is 100%.

Group of orthologs #1143. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6SNU1              	100.00%		G3JMR7              	100.00%
Bootstrap support for F6SNU1 as seed ortholog is 100%.
Bootstrap support for G3JMR7 as seed ortholog is 100%.

Group of orthologs #1144. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6R6C4              	100.00%		G3JSH5              	100.00%
Bootstrap support for F6R6C4 as seed ortholog is 100%.
Bootstrap support for G3JSH5 as seed ortholog is 100%.

Group of orthologs #1145. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6XS17              	100.00%		G3JQE8              	100.00%
Bootstrap support for F6XS17 as seed ortholog is 100%.
Bootstrap support for G3JQE8 as seed ortholog is 100%.

Group of orthologs #1146. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:80

F6XD08              	100.00%		G3JS16              	100.00%
Bootstrap support for F6XD08 as seed ortholog is 95%.
Bootstrap support for G3JS16 as seed ortholog is 97%.

Group of orthologs #1147. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F6Z998              	100.00%		G3JQR1              	100.00%
Bootstrap support for F6Z998 as seed ortholog is 100%.
Bootstrap support for G3JQR1 as seed ortholog is 100%.

Group of orthologs #1148. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

F7B391              	100.00%		G3JM39              	100.00%
Bootstrap support for F7B391 as seed ortholog is 100%.
Bootstrap support for G3JM39 as seed ortholog is 100%.

Group of orthologs #1149. Best score 166 bits
Score difference with first non-orthologous sequence - C.intestinalis:166 C.militaris:166

H2XLC7              	100.00%		G3JJH3              	100.00%
Bootstrap support for H2XLC7 as seed ortholog is 100%.
Bootstrap support for G3JJH3 as seed ortholog is 100%.

Group of orthologs #1150. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 C.militaris:123

F6PUR6              	100.00%		G3JAL5              	100.00%
H2XRT7              	100.00%		G3J5L6              	100.00%
F6ZNW9              	83.22%		
F7B9K0              	51.56%		
F6TL65              	44.67%		
Bootstrap support for F6PUR6 as seed ortholog is 100%.
Bootstrap support for H2XRT7 as seed ortholog is 100%.
Bootstrap support for G3JAL5 as seed ortholog is 99%.
Bootstrap support for G3J5L6 as seed ortholog is 97%.

Group of orthologs #1151. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:165

F6VG38              	100.00%		G3JSD8              	100.00%
Bootstrap support for F6VG38 as seed ortholog is 99%.
Bootstrap support for G3JSD8 as seed ortholog is 100%.

Group of orthologs #1152. Best score 165 bits
Score difference with first non-orthologous sequence - C.intestinalis:165 C.militaris:165

F7ACJ3              	100.00%		G3JL37              	100.00%
Bootstrap support for F7ACJ3 as seed ortholog is 100%.
Bootstrap support for G3JL37 as seed ortholog is 100%.

Group of orthologs #1153. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 C.militaris:164

F7BH38              	100.00%		G3JU88              	100.00%
F6UCD8              	18.22%		
Bootstrap support for F7BH38 as seed ortholog is 100%.
Bootstrap support for G3JU88 as seed ortholog is 100%.

Group of orthologs #1154. Best score 164 bits
Score difference with first non-orthologous sequence - C.intestinalis:164 C.militaris:164

H2XWM6              	100.00%		G3JC38              	100.00%
Bootstrap support for H2XWM6 as seed ortholog is 100%.
Bootstrap support for G3JC38 as seed ortholog is 100%.

Group of orthologs #1155. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:94

F6RGX1              	100.00%		G3JER1              	100.00%
Bootstrap support for F6RGX1 as seed ortholog is 99%.
Bootstrap support for G3JER1 as seed ortholog is 99%.

Group of orthologs #1156. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 C.militaris:163

F6R407              	100.00%		G3JLT3              	100.00%
Bootstrap support for F6R407 as seed ortholog is 100%.
Bootstrap support for G3JLT3 as seed ortholog is 100%.

Group of orthologs #1157. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 C.militaris:163

F6XTQ1              	100.00%		G3JN28              	100.00%
Bootstrap support for F6XTQ1 as seed ortholog is 100%.
Bootstrap support for G3JN28 as seed ortholog is 100%.

Group of orthologs #1158. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 C.militaris:163

F7BHN6              	100.00%		G3JDW5              	100.00%
Bootstrap support for F7BHN6 as seed ortholog is 100%.
Bootstrap support for G3JDW5 as seed ortholog is 100%.

Group of orthologs #1159. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 C.militaris:163

F6YGZ1              	100.00%		G3JNX2              	100.00%
Bootstrap support for F6YGZ1 as seed ortholog is 100%.
Bootstrap support for G3JNX2 as seed ortholog is 100%.

Group of orthologs #1160. Best score 163 bits
Score difference with first non-orthologous sequence - C.intestinalis:163 C.militaris:163

Q67EQ6              	100.00%		G3JMR1              	100.00%
Bootstrap support for Q67EQ6 as seed ortholog is 100%.
Bootstrap support for G3JMR1 as seed ortholog is 100%.

Group of orthologs #1161. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 C.militaris:162

F6RQZ5              	100.00%		G3JMV2              	100.00%
                    	       		G3JTP8              	100.00%
                    	       		G3JSL1              	13.81%
Bootstrap support for F6RQZ5 as seed ortholog is 100%.
Bootstrap support for G3JMV2 as seed ortholog is 100%.
Bootstrap support for G3JTP8 as seed ortholog is 100%.

Group of orthologs #1162. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:13 C.militaris:162

H2Y2E8              	100.00%		G3JQV6              	100.00%
                    	       		G3J9Q5              	7.46%
Bootstrap support for H2Y2E8 as seed ortholog is 62%.
Alternative seed ortholog is F7A160 (13 bits away from this cluster)
Bootstrap support for G3JQV6 as seed ortholog is 100%.

Group of orthologs #1163. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 C.militaris:162

F6PMD1              	100.00%		G3JRG9              	100.00%
Bootstrap support for F6PMD1 as seed ortholog is 100%.
Bootstrap support for G3JRG9 as seed ortholog is 100%.

Group of orthologs #1164. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 C.militaris:162

F6X0R0              	100.00%		G3JD32              	100.00%
Bootstrap support for F6X0R0 as seed ortholog is 99%.
Bootstrap support for G3JD32 as seed ortholog is 100%.

Group of orthologs #1165. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 C.militaris:162

F6XER0              	100.00%		G3JNS6              	100.00%
Bootstrap support for F6XER0 as seed ortholog is 100%.
Bootstrap support for G3JNS6 as seed ortholog is 100%.

Group of orthologs #1166. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 C.militaris:162

H2Y197              	100.00%		G3J987              	100.00%
Bootstrap support for H2Y197 as seed ortholog is 100%.
Bootstrap support for G3J987 as seed ortholog is 100%.

Group of orthologs #1167. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 C.militaris:162

Q4H3S8              	100.00%		G3J6X9              	100.00%
Bootstrap support for Q4H3S8 as seed ortholog is 99%.
Bootstrap support for G3J6X9 as seed ortholog is 100%.

Group of orthologs #1168. Best score 162 bits
Score difference with first non-orthologous sequence - C.intestinalis:162 C.militaris:162

H2XWN4              	100.00%		G3JQT3              	100.00%
Bootstrap support for H2XWN4 as seed ortholog is 100%.
Bootstrap support for G3JQT3 as seed ortholog is 100%.

Group of orthologs #1169. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:88

F6REQ0              	100.00%		G3J715              	100.00%
                    	       		G3JGE0              	18.96%
                    	       		G3JPY9              	11.65%
                    	       		G3J956              	9.62%
Bootstrap support for F6REQ0 as seed ortholog is 100%.
Bootstrap support for G3J715 as seed ortholog is 94%.

Group of orthologs #1170. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:161

F6SKK8              	100.00%		G3JNM3              	100.00%
Bootstrap support for F6SKK8 as seed ortholog is 100%.
Bootstrap support for G3JNM3 as seed ortholog is 100%.

Group of orthologs #1171. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:161

F6YB67              	100.00%		G3JCY1              	100.00%
Bootstrap support for F6YB67 as seed ortholog is 100%.
Bootstrap support for G3JCY1 as seed ortholog is 100%.

Group of orthologs #1172. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:161

F6ZBY5              	100.00%		G3JAT8              	100.00%
Bootstrap support for F6ZBY5 as seed ortholog is 100%.
Bootstrap support for G3JAT8 as seed ortholog is 100%.

Group of orthologs #1173. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:103

F6Y011              	100.00%		G3JED8              	100.00%
Bootstrap support for F6Y011 as seed ortholog is 100%.
Bootstrap support for G3JED8 as seed ortholog is 99%.

Group of orthologs #1174. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:161

F6TQ12              	100.00%		G3JRA7              	100.00%
Bootstrap support for F6TQ12 as seed ortholog is 100%.
Bootstrap support for G3JRA7 as seed ortholog is 100%.

Group of orthologs #1175. Best score 161 bits
Score difference with first non-orthologous sequence - C.intestinalis:161 C.militaris:161

H2XPL3              	100.00%		G3JN27              	100.00%
Bootstrap support for H2XPL3 as seed ortholog is 100%.
Bootstrap support for G3JN27 as seed ortholog is 100%.

Group of orthologs #1176. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:13

B1H3L8              	100.00%		G3J8E9              	100.00%
H2XQB4              	5.76%		
Bootstrap support for B1H3L8 as seed ortholog is 100%.
Bootstrap support for G3J8E9 as seed ortholog is 59%.
Alternative seed ortholog is G3J2Y6 (13 bits away from this cluster)

Group of orthologs #1177. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:160

F6PKA1              	100.00%		G3JKK5              	100.00%
Bootstrap support for F6PKA1 as seed ortholog is 100%.
Bootstrap support for G3JKK5 as seed ortholog is 100%.

Group of orthologs #1178. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:160

F6Q3L6              	100.00%		G3JLB9              	100.00%
Bootstrap support for F6Q3L6 as seed ortholog is 100%.
Bootstrap support for G3JLB9 as seed ortholog is 100%.

Group of orthologs #1179. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:160

F6SF69              	100.00%		G3JLD3              	100.00%
Bootstrap support for F6SF69 as seed ortholog is 100%.
Bootstrap support for G3JLD3 as seed ortholog is 100%.

Group of orthologs #1180. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:79

F6ZGG6              	100.00%		G3J6I9              	100.00%
Bootstrap support for F6ZGG6 as seed ortholog is 100%.
Bootstrap support for G3J6I9 as seed ortholog is 96%.

Group of orthologs #1181. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:96

F6VEB2              	100.00%		G3JPS8              	100.00%
Bootstrap support for F6VEB2 as seed ortholog is 100%.
Bootstrap support for G3JPS8 as seed ortholog is 98%.

Group of orthologs #1182. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:160

F6ZP02              	100.00%		G3JII3              	100.00%
Bootstrap support for F6ZP02 as seed ortholog is 100%.
Bootstrap support for G3JII3 as seed ortholog is 100%.

Group of orthologs #1183. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:160

H2XXA8              	100.00%		G3JD77              	100.00%
Bootstrap support for H2XXA8 as seed ortholog is 99%.
Bootstrap support for G3JD77 as seed ortholog is 100%.

Group of orthologs #1184. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:160

H2Y0Q6              	100.00%		G3JD04              	100.00%
Bootstrap support for H2Y0Q6 as seed ortholog is 100%.
Bootstrap support for G3JD04 as seed ortholog is 100%.

Group of orthologs #1185. Best score 160 bits
Score difference with first non-orthologous sequence - C.intestinalis:160 C.militaris:160

H2XQN8              	100.00%		G3JND5              	100.00%
Bootstrap support for H2XQN8 as seed ortholog is 100%.
Bootstrap support for G3JND5 as seed ortholog is 100%.

Group of orthologs #1186. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:62

F6S855              	100.00%		G3JKH0              	100.00%
F6XUY3              	65.07%		
F6S880              	64.63%		
F6W3Q9              	43.45%		
F7BGH4              	7.42%		
F6UJQ6              	6.99%		
H2XY22              	5.24%		
Bootstrap support for F6S855 as seed ortholog is 98%.
Bootstrap support for G3JKH0 as seed ortholog is 95%.

Group of orthologs #1187. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:159

F6SAX8              	100.00%		G3J596              	100.00%
Bootstrap support for F6SAX8 as seed ortholog is 100%.
Bootstrap support for G3J596 as seed ortholog is 100%.

Group of orthologs #1188. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:159

F6WVX7              	100.00%		G3J618              	100.00%
Bootstrap support for F6WVX7 as seed ortholog is 100%.
Bootstrap support for G3J618 as seed ortholog is 100%.

Group of orthologs #1189. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:159

F7AG43              	100.00%		G3JA03              	100.00%
Bootstrap support for F7AG43 as seed ortholog is 100%.
Bootstrap support for G3JA03 as seed ortholog is 100%.

Group of orthologs #1190. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:159

F6ZA35              	100.00%		G3JFZ4              	100.00%
Bootstrap support for F6ZA35 as seed ortholog is 100%.
Bootstrap support for G3JFZ4 as seed ortholog is 100%.

Group of orthologs #1191. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:159

F7A8L8              	100.00%		G3JMU0              	100.00%
Bootstrap support for F7A8L8 as seed ortholog is 100%.
Bootstrap support for G3JMU0 as seed ortholog is 100%.

Group of orthologs #1192. Best score 159 bits
Score difference with first non-orthologous sequence - C.intestinalis:159 C.militaris:159

F6ZIM0              	100.00%		G3JU26              	100.00%
Bootstrap support for F6ZIM0 as seed ortholog is 100%.
Bootstrap support for G3JU26 as seed ortholog is 100%.

Group of orthologs #1193. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 C.militaris:57

A7BK23              	100.00%		G3JPW8              	100.00%
                    	       		G3J4A9              	29.03%
Bootstrap support for A7BK23 as seed ortholog is 100%.
Bootstrap support for G3JPW8 as seed ortholog is 90%.

Group of orthologs #1194. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 C.militaris:102

F7AZA1              	100.00%		G3JAZ1              	100.00%
                    	       		G3JDA8              	46.06%
Bootstrap support for F7AZA1 as seed ortholog is 100%.
Bootstrap support for G3JAZ1 as seed ortholog is 99%.

Group of orthologs #1195. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 C.militaris:158

F6R2P7              	100.00%		G3JDI2              	100.00%
Bootstrap support for F6R2P7 as seed ortholog is 100%.
Bootstrap support for G3JDI2 as seed ortholog is 100%.

Group of orthologs #1196. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 C.militaris:158

F6XNK4              	100.00%		G3J2T7              	100.00%
Bootstrap support for F6XNK4 as seed ortholog is 100%.
Bootstrap support for G3J2T7 as seed ortholog is 100%.

Group of orthologs #1197. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:158 C.militaris:158

F7B2X5              	100.00%		G3J7F4              	100.00%
Bootstrap support for F7B2X5 as seed ortholog is 100%.
Bootstrap support for G3J7F4 as seed ortholog is 100%.

Group of orthologs #1198. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:46

F6XDJ2              	100.00%		G3JHQ5              	100.00%
Bootstrap support for F6XDJ2 as seed ortholog is 97%.
Bootstrap support for G3JHQ5 as seed ortholog is 89%.

Group of orthologs #1199. Best score 158 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:158

F6VQ02              	100.00%		G3JPM9              	100.00%
Bootstrap support for F6VQ02 as seed ortholog is 99%.
Bootstrap support for G3JPM9 as seed ortholog is 100%.

Group of orthologs #1200. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:157

F6PPP3              	100.00%		G3J882              	100.00%
Bootstrap support for F6PPP3 as seed ortholog is 100%.
Bootstrap support for G3J882 as seed ortholog is 100%.

Group of orthologs #1201. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:157

F6RE18              	100.00%		G3J988              	100.00%
Bootstrap support for F6RE18 as seed ortholog is 100%.
Bootstrap support for G3J988 as seed ortholog is 100%.

Group of orthologs #1202. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:157

F6X1E1              	100.00%		G3J5T9              	100.00%
Bootstrap support for F6X1E1 as seed ortholog is 100%.
Bootstrap support for G3J5T9 as seed ortholog is 100%.

Group of orthologs #1203. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:157

F6ZDT1              	100.00%		G3J3Z2              	100.00%
Bootstrap support for F6ZDT1 as seed ortholog is 100%.
Bootstrap support for G3J3Z2 as seed ortholog is 100%.

Group of orthologs #1204. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:41 C.militaris:79

F6WTM4              	100.00%		G3JH73              	100.00%
Bootstrap support for F6WTM4 as seed ortholog is 93%.
Bootstrap support for G3JH73 as seed ortholog is 98%.

Group of orthologs #1205. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:157

H2XNY0              	100.00%		G3JDC1              	100.00%
Bootstrap support for H2XNY0 as seed ortholog is 100%.
Bootstrap support for G3JDC1 as seed ortholog is 100%.

Group of orthologs #1206. Best score 157 bits
Score difference with first non-orthologous sequence - C.intestinalis:157 C.militaris:157

F6ZS91              	100.00%		G3JNT3              	100.00%
Bootstrap support for F6ZS91 as seed ortholog is 100%.
Bootstrap support for G3JNT3 as seed ortholog is 100%.

Group of orthologs #1207. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 C.militaris:156

F6R1A2              	100.00%		G3J9F1              	100.00%
                    	       		G3JSL9              	35.95%
Bootstrap support for F6R1A2 as seed ortholog is 100%.
Bootstrap support for G3J9F1 as seed ortholog is 100%.

Group of orthologs #1208. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 C.militaris:156

F6V771              	100.00%		G3J863              	100.00%
                    	       		G3JP39              	32.22%
Bootstrap support for F6V771 as seed ortholog is 100%.
Bootstrap support for G3J863 as seed ortholog is 100%.

Group of orthologs #1209. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:22

F6QZM4              	100.00%		G3JQI1              	100.00%
H2XP52              	35.89%		
Bootstrap support for F6QZM4 as seed ortholog is 99%.
Bootstrap support for G3JQI1 as seed ortholog is 73%.
Alternative seed ortholog is G3JE12 (22 bits away from this cluster)

Group of orthologs #1210. Best score 156 bits
Score difference with first non-orthologous sequence - C.intestinalis:156 C.militaris:156

H2XUK5              	100.00%		G3JIN6              	100.00%
Bootstrap support for H2XUK5 as seed ortholog is 100%.
Bootstrap support for G3JIN6 as seed ortholog is 100%.

Group of orthologs #1211. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 C.militaris:155

F6V4L6              	100.00%		G3J358              	100.00%
Bootstrap support for F6V4L6 as seed ortholog is 100%.
Bootstrap support for G3J358 as seed ortholog is 100%.

Group of orthologs #1212. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 C.militaris:155

F6PK54              	100.00%		G3JLT0              	100.00%
Bootstrap support for F6PK54 as seed ortholog is 100%.
Bootstrap support for G3JLT0 as seed ortholog is 100%.

Group of orthologs #1213. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 C.militaris:155

F6SVN8              	100.00%		G3JNF5              	100.00%
Bootstrap support for F6SVN8 as seed ortholog is 100%.
Bootstrap support for G3JNF5 as seed ortholog is 100%.

Group of orthologs #1214. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 C.militaris:155

F6W4G9              	100.00%		G3JPR6              	100.00%
Bootstrap support for F6W4G9 as seed ortholog is 44%.
Alternative seed ortholog is F6QMU4 (40 bits away from this cluster)
Bootstrap support for G3JPR6 as seed ortholog is 100%.

Group of orthologs #1215. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 C.militaris:155

F7ASJ4              	100.00%		G3JMR0              	100.00%
Bootstrap support for F7ASJ4 as seed ortholog is 100%.
Bootstrap support for G3JMR0 as seed ortholog is 100%.

Group of orthologs #1216. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 C.militaris:155

H2XTF1              	100.00%		G3JP75              	100.00%
Bootstrap support for H2XTF1 as seed ortholog is 100%.
Bootstrap support for G3JP75 as seed ortholog is 100%.

Group of orthologs #1217. Best score 155 bits
Score difference with first non-orthologous sequence - C.intestinalis:155 C.militaris:155

H2XVJ7              	100.00%		G3JNC6              	100.00%
Bootstrap support for H2XVJ7 as seed ortholog is 100%.
Bootstrap support for G3JNC6 as seed ortholog is 100%.

Group of orthologs #1218. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:154

F6R0P0              	100.00%		G3J7V8              	100.00%
Bootstrap support for F6R0P0 as seed ortholog is 100%.
Bootstrap support for G3J7V8 as seed ortholog is 100%.

Group of orthologs #1219. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:154

F6VJL7              	100.00%		G3J330              	100.00%
Bootstrap support for F6VJL7 as seed ortholog is 100%.
Bootstrap support for G3J330 as seed ortholog is 100%.

Group of orthologs #1220. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:154

F6TZK8              	100.00%		G3JG28              	100.00%
Bootstrap support for F6TZK8 as seed ortholog is 100%.
Bootstrap support for G3JG28 as seed ortholog is 100%.

Group of orthologs #1221. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:154

F6XTZ6              	100.00%		G3JAF3              	100.00%
Bootstrap support for F6XTZ6 as seed ortholog is 100%.
Bootstrap support for G3JAF3 as seed ortholog is 100%.

Group of orthologs #1222. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:154

F6UK15              	100.00%		G3JPW3              	100.00%
Bootstrap support for F6UK15 as seed ortholog is 100%.
Bootstrap support for G3JPW3 as seed ortholog is 100%.

Group of orthologs #1223. Best score 154 bits
Score difference with first non-orthologous sequence - C.intestinalis:154 C.militaris:154

F6VXA3              	100.00%		G3JMA2              	100.00%
Bootstrap support for F6VXA3 as seed ortholog is 100%.
Bootstrap support for G3JMA2 as seed ortholog is 100%.

Group of orthologs #1224. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.militaris:153

A1XDA5              	100.00%		G3J7Q2              	100.00%
Bootstrap support for A1XDA5 as seed ortholog is 100%.
Bootstrap support for G3J7Q2 as seed ortholog is 100%.

Group of orthologs #1225. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.militaris:153

F6TKL9              	100.00%		G3JCU4              	100.00%
Bootstrap support for F6TKL9 as seed ortholog is 100%.
Bootstrap support for G3JCU4 as seed ortholog is 100%.

Group of orthologs #1226. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.militaris:64

F6X0B6              	100.00%		G3J776              	100.00%
Bootstrap support for F6X0B6 as seed ortholog is 96%.
Bootstrap support for G3J776 as seed ortholog is 87%.

Group of orthologs #1227. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.militaris:153

H2XP72              	100.00%		G3J754              	100.00%
Bootstrap support for H2XP72 as seed ortholog is 100%.
Bootstrap support for G3J754 as seed ortholog is 100%.

Group of orthologs #1228. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:153

F7ATN8              	100.00%		G3JUN5              	100.00%
Bootstrap support for F7ATN8 as seed ortholog is 100%.
Bootstrap support for G3JUN5 as seed ortholog is 100%.

Group of orthologs #1229. Best score 153 bits
Score difference with first non-orthologous sequence - C.intestinalis:153 C.militaris:153

H2XUQ0              	100.00%		G3JNS4              	100.00%
Bootstrap support for H2XUQ0 as seed ortholog is 100%.
Bootstrap support for G3JNS4 as seed ortholog is 100%.

Group of orthologs #1230. Best score 152 bits
Score difference with first non-orthologous sequence - C.intestinalis:152 C.militaris:87

H2XT65              	100.00%		G3J8S8              	100.00%
Bootstrap support for H2XT65 as seed ortholog is 100%.
Bootstrap support for G3J8S8 as seed ortholog is 98%.

Group of orthologs #1231. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 C.militaris:151

F6UDM9              	100.00%		G3JAM6              	100.00%
H2XR44              	10.76%		
Bootstrap support for F6UDM9 as seed ortholog is 100%.
Bootstrap support for G3JAM6 as seed ortholog is 100%.

Group of orthologs #1232. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:39 C.militaris:31

H2XKN2              	100.00%		G3J4F2              	100.00%
F6W872              	6.18%		
Bootstrap support for H2XKN2 as seed ortholog is 88%.
Bootstrap support for G3J4F2 as seed ortholog is 80%.

Group of orthologs #1233. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:151

F6UTK0              	100.00%		G3J356              	100.00%
Bootstrap support for F6UTK0 as seed ortholog is 99%.
Bootstrap support for G3J356 as seed ortholog is 100%.

Group of orthologs #1234. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 C.militaris:151

F6QHG7              	100.00%		G3JDB6              	100.00%
Bootstrap support for F6QHG7 as seed ortholog is 100%.
Bootstrap support for G3JDB6 as seed ortholog is 100%.

Group of orthologs #1235. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 C.militaris:151

F6T2S3              	100.00%		G3JLT6              	100.00%
Bootstrap support for F6T2S3 as seed ortholog is 100%.
Bootstrap support for G3JLT6 as seed ortholog is 100%.

Group of orthologs #1236. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 C.militaris:151

H2Y3L9              	100.00%		G3J3B7              	100.00%
Bootstrap support for H2Y3L9 as seed ortholog is 100%.
Bootstrap support for G3J3B7 as seed ortholog is 100%.

Group of orthologs #1237. Best score 151 bits
Score difference with first non-orthologous sequence - C.intestinalis:151 C.militaris:151

H2Y0A0              	100.00%		G3JAL6              	100.00%
Bootstrap support for H2Y0A0 as seed ortholog is 100%.
Bootstrap support for G3JAL6 as seed ortholog is 100%.

Group of orthologs #1238. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:150 C.militaris:150

F6RR57              	100.00%		G3JB39              	100.00%
Bootstrap support for F6RR57 as seed ortholog is 100%.
Bootstrap support for G3JB39 as seed ortholog is 100%.

Group of orthologs #1239. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:16 C.militaris:150

F6U8Q9              	100.00%		G3JHB3              	100.00%
Bootstrap support for F6U8Q9 as seed ortholog is 64%.
Alternative seed ortholog is F6R8G4 (16 bits away from this cluster)
Bootstrap support for G3JHB3 as seed ortholog is 100%.

Group of orthologs #1240. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:150 C.militaris:150

F6UP49              	100.00%		G3JMR9              	100.00%
Bootstrap support for F6UP49 as seed ortholog is 100%.
Bootstrap support for G3JMR9 as seed ortholog is 100%.

Group of orthologs #1241. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:150 C.militaris:150

F6TVS6              	100.00%		G3JQ38              	100.00%
Bootstrap support for F6TVS6 as seed ortholog is 100%.
Bootstrap support for G3JQ38 as seed ortholog is 100%.

Group of orthologs #1242. Best score 150 bits
Score difference with first non-orthologous sequence - C.intestinalis:150 C.militaris:150

F6X2Y1              	100.00%		G3JPT7              	100.00%
Bootstrap support for F6X2Y1 as seed ortholog is 100%.
Bootstrap support for G3JPT7 as seed ortholog is 100%.

Group of orthologs #1243. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.militaris:149

F6PRI9              	100.00%		G3JHU2              	100.00%
F6TYP3              	36.32%		
Bootstrap support for F6PRI9 as seed ortholog is 96%.
Bootstrap support for G3JHU2 as seed ortholog is 100%.

Group of orthologs #1244. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

F6Z235              	100.00%		G3JA01              	100.00%
Bootstrap support for F6Z235 as seed ortholog is 100%.
Bootstrap support for G3JA01 as seed ortholog is 100%.

Group of orthologs #1245. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

F6RHG2              	100.00%		G3JSN5              	100.00%
Bootstrap support for F6RHG2 as seed ortholog is 100%.
Bootstrap support for G3JSN5 as seed ortholog is 100%.

Group of orthologs #1246. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

F6T6F5              	100.00%		G3JT05              	100.00%
Bootstrap support for F6T6F5 as seed ortholog is 100%.
Bootstrap support for G3JT05 as seed ortholog is 100%.

Group of orthologs #1247. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

F6SU13              	100.00%		G3JUB2              	100.00%
Bootstrap support for F6SU13 as seed ortholog is 100%.
Bootstrap support for G3JUB2 as seed ortholog is 100%.

Group of orthologs #1248. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

H2XY13              	100.00%		G3J3U6              	100.00%
Bootstrap support for H2XY13 as seed ortholog is 100%.
Bootstrap support for G3J3U6 as seed ortholog is 100%.

Group of orthologs #1249. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

H2XNI7              	100.00%		G3JDY4              	100.00%
Bootstrap support for H2XNI7 as seed ortholog is 100%.
Bootstrap support for G3JDY4 as seed ortholog is 100%.

Group of orthologs #1250. Best score 149 bits
Score difference with first non-orthologous sequence - C.intestinalis:149 C.militaris:149

F6Z8N3              	100.00%		G3JQU4              	100.00%
Bootstrap support for F6Z8N3 as seed ortholog is 100%.
Bootstrap support for G3JQU4 as seed ortholog is 100%.

Group of orthologs #1251. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:148

F6S578              	100.00%		G3J5R8              	100.00%
Bootstrap support for F6S578 as seed ortholog is 100%.
Bootstrap support for G3J5R8 as seed ortholog is 100%.

Group of orthologs #1252. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:49

F6Y8Y8              	100.00%		G3J3Q2              	100.00%
Bootstrap support for F6Y8Y8 as seed ortholog is 100%.
Bootstrap support for G3J3Q2 as seed ortholog is 94%.

Group of orthologs #1253. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:148

F7A5A0              	100.00%		G3J7A4              	100.00%
Bootstrap support for F7A5A0 as seed ortholog is 100%.
Bootstrap support for G3J7A4 as seed ortholog is 100%.

Group of orthologs #1254. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:148

F6YXW3              	100.00%		G3JBM6              	100.00%
Bootstrap support for F6YXW3 as seed ortholog is 100%.
Bootstrap support for G3JBM6 as seed ortholog is 100%.

Group of orthologs #1255. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:148

F6ZQ58              	100.00%		G3JMH0              	100.00%
Bootstrap support for F6ZQ58 as seed ortholog is 99%.
Bootstrap support for G3JMH0 as seed ortholog is 100%.

Group of orthologs #1256. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:148

F6ZCL3              	100.00%		G3JQT9              	100.00%
Bootstrap support for F6ZCL3 as seed ortholog is 100%.
Bootstrap support for G3JQT9 as seed ortholog is 100%.

Group of orthologs #1257. Best score 148 bits
Score difference with first non-orthologous sequence - C.intestinalis:148 C.militaris:148

H2Y009              	100.00%		G3JK16              	100.00%
Bootstrap support for H2Y009 as seed ortholog is 100%.
Bootstrap support for G3JK16 as seed ortholog is 100%.

Group of orthologs #1258. Best score 147 bits
Score difference with first non-orthologous sequence - C.intestinalis:147 C.militaris:147

F7AHA3              	100.00%		G3J870              	100.00%
H2XRR3              	9.48%		
Bootstrap support for F7AHA3 as seed ortholog is 100%.
Bootstrap support for G3J870 as seed ortholog is 100%.

Group of orthologs #1259. Best score 147 bits
Score difference with first non-orthologous sequence - C.intestinalis:147 C.militaris:147

Q1RL49              	100.00%		G3JKK0              	100.00%
Bootstrap support for Q1RL49 as seed ortholog is 100%.
Bootstrap support for G3JKK0 as seed ortholog is 100%.

Group of orthologs #1260. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.militaris:95

F6XGK4              	100.00%		G3JK19              	100.00%
F7A5D0              	100.00%		
F6QZW1              	18.80%		
F6Z145              	8.10%		
Bootstrap support for F6XGK4 as seed ortholog is 100%.
Bootstrap support for F7A5D0 as seed ortholog is 100%.
Bootstrap support for G3JK19 as seed ortholog is 96%.

Group of orthologs #1261. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 C.militaris:70

F6QST8              	100.00%		G3J3U3              	100.00%
Bootstrap support for F6QST8 as seed ortholog is 97%.
Bootstrap support for G3J3U3 as seed ortholog is 92%.

Group of orthologs #1262. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.militaris:146

F7AYB2              	100.00%		G3J4J9              	100.00%
Bootstrap support for F7AYB2 as seed ortholog is 100%.
Bootstrap support for G3J4J9 as seed ortholog is 100%.

Group of orthologs #1263. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.militaris:146

F6YZ22              	100.00%		G3JBW0              	100.00%
Bootstrap support for F6YZ22 as seed ortholog is 100%.
Bootstrap support for G3JBW0 as seed ortholog is 100%.

Group of orthologs #1264. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:91

F6XJX5              	100.00%		G3JKF2              	100.00%
Bootstrap support for F6XJX5 as seed ortholog is 96%.
Bootstrap support for G3JKF2 as seed ortholog is 99%.

Group of orthologs #1265. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.militaris:82

H2XZC9              	100.00%		G3J3Z8              	100.00%
Bootstrap support for H2XZC9 as seed ortholog is 100%.
Bootstrap support for G3J3Z8 as seed ortholog is 96%.

Group of orthologs #1266. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:146 C.militaris:146

H2XTJ5              	100.00%		G3JIA9              	100.00%
Bootstrap support for H2XTJ5 as seed ortholog is 100%.
Bootstrap support for G3JIA9 as seed ortholog is 100%.

Group of orthologs #1267. Best score 146 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:65

H2XVE0              	100.00%		G3JQ43              	100.00%
Bootstrap support for H2XVE0 as seed ortholog is 91%.
Bootstrap support for G3JQ43 as seed ortholog is 98%.

Group of orthologs #1268. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:145 C.militaris:145

F6SJR0              	100.00%		G3JK53              	100.00%
F7BH23              	14.96%		
F6ZB26              	7.09%		
Bootstrap support for F6SJR0 as seed ortholog is 100%.
Bootstrap support for G3JK53 as seed ortholog is 100%.

Group of orthologs #1269. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:145 C.militaris:98

F6ZUD7              	100.00%		G3JQK6              	100.00%
                    	       		G3JIC1              	23.14%
Bootstrap support for F6ZUD7 as seed ortholog is 100%.
Bootstrap support for G3JQK6 as seed ortholog is 97%.

Group of orthologs #1270. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:7 C.militaris:145

F6QAT1              	100.00%		G3J3L4              	100.00%
Bootstrap support for F6QAT1 as seed ortholog is 57%.
Alternative seed ortholog is F6RB18 (7 bits away from this cluster)
Bootstrap support for G3J3L4 as seed ortholog is 100%.

Group of orthologs #1271. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:145 C.militaris:145

F6Q484              	100.00%		G3JAR8              	100.00%
Bootstrap support for F6Q484 as seed ortholog is 100%.
Bootstrap support for G3JAR8 as seed ortholog is 100%.

Group of orthologs #1272. Best score 145 bits
Score difference with first non-orthologous sequence - C.intestinalis:145 C.militaris:145

F6UXH9              	100.00%		G3J6G6              	100.00%
Bootstrap support for F6UXH9 as seed ortholog is 100%.
Bootstrap support for G3J6G6 as seed ortholog is 100%.

Group of orthologs #1273. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 C.militaris:16

F6TXH8              	100.00%		G3JEI3              	100.00%
F6RY16              	22.09%		
F6ZT48              	18.40%		
F6WMS1              	14.31%		
F6WMR0              	6.34%		
Bootstrap support for F6TXH8 as seed ortholog is 100%.
Bootstrap support for G3JEI3 as seed ortholog is 34%.
Alternative seed ortholog is G3JK79 (16 bits away from this cluster)

Group of orthologs #1274. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 C.militaris:39

F6PQW9              	100.00%		G3JHK6              	100.00%
Bootstrap support for F6PQW9 as seed ortholog is 100%.
Bootstrap support for G3JHK6 as seed ortholog is 97%.

Group of orthologs #1275. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 C.militaris:144

F6T1Y9              	100.00%		G3JH85              	100.00%
Bootstrap support for F6T1Y9 as seed ortholog is 100%.
Bootstrap support for G3JH85 as seed ortholog is 100%.

Group of orthologs #1276. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 C.militaris:144

F6W7Q3              	100.00%		G3JK89              	100.00%
Bootstrap support for F6W7Q3 as seed ortholog is 100%.
Bootstrap support for G3JK89 as seed ortholog is 100%.

Group of orthologs #1277. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 C.militaris:144

F6YFR8              	100.00%		G3JLA4              	100.00%
Bootstrap support for F6YFR8 as seed ortholog is 100%.
Bootstrap support for G3JLA4 as seed ortholog is 100%.

Group of orthologs #1278. Best score 144 bits
Score difference with first non-orthologous sequence - C.intestinalis:144 C.militaris:144

F7BK44              	100.00%		G3JFT3              	100.00%
Bootstrap support for F7BK44 as seed ortholog is 100%.
Bootstrap support for G3JFT3 as seed ortholog is 100%.

Group of orthologs #1279. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6ULQ2              	100.00%		G3JU14              	100.00%
H2Y0B3              	6.12%		
Bootstrap support for F6ULQ2 as seed ortholog is 100%.
Bootstrap support for G3JU14 as seed ortholog is 100%.

Group of orthologs #1280. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6QWW6              	100.00%		G3J486              	100.00%
Bootstrap support for F6QWW6 as seed ortholog is 100%.
Bootstrap support for G3J486 as seed ortholog is 100%.

Group of orthologs #1281. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6S7T3              	100.00%		G3JEH9              	100.00%
Bootstrap support for F6S7T3 as seed ortholog is 100%.
Bootstrap support for G3JEH9 as seed ortholog is 100%.

Group of orthologs #1282. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:5

F6XML9              	100.00%		G3J3L0              	100.00%
Bootstrap support for F6XML9 as seed ortholog is 100%.
Bootstrap support for G3J3L0 as seed ortholog is 56%.
Alternative seed ortholog is G3J7S0 (5 bits away from this cluster)

Group of orthologs #1283. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6VW40              	100.00%		G3JAT6              	100.00%
Bootstrap support for F6VW40 as seed ortholog is 100%.
Bootstrap support for G3JAT6 as seed ortholog is 100%.

Group of orthologs #1284. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6RWU5              	100.00%		G3JPR1              	100.00%
Bootstrap support for F6RWU5 as seed ortholog is 100%.
Bootstrap support for G3JPR1 as seed ortholog is 100%.

Group of orthologs #1285. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F7AMW5              	100.00%		G3J597              	100.00%
Bootstrap support for F7AMW5 as seed ortholog is 100%.
Bootstrap support for G3J597 as seed ortholog is 100%.

Group of orthologs #1286. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6ZXH6              	100.00%		G3JAV0              	100.00%
Bootstrap support for F6ZXH6 as seed ortholog is 100%.
Bootstrap support for G3JAV0 as seed ortholog is 100%.

Group of orthologs #1287. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

H2XS17              	100.00%		G3J588              	100.00%
Bootstrap support for H2XS17 as seed ortholog is 100%.
Bootstrap support for G3J588 as seed ortholog is 100%.

Group of orthologs #1288. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6WWT1              	100.00%		G3JTM8              	100.00%
Bootstrap support for F6WWT1 as seed ortholog is 100%.
Bootstrap support for G3JTM8 as seed ortholog is 100%.

Group of orthologs #1289. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

F6ZQ39              	100.00%		G3JQ41              	100.00%
Bootstrap support for F6ZQ39 as seed ortholog is 100%.
Bootstrap support for G3JQ41 as seed ortholog is 100%.

Group of orthologs #1290. Best score 143 bits
Score difference with first non-orthologous sequence - C.intestinalis:143 C.militaris:143

H2XSK2              	100.00%		G3JSG0              	100.00%
Bootstrap support for H2XSK2 as seed ortholog is 100%.
Bootstrap support for G3JSG0 as seed ortholog is 100%.

Group of orthologs #1291. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 C.militaris:142

F6VPU4              	100.00%		G3JBK1              	100.00%
Bootstrap support for F6VPU4 as seed ortholog is 100%.
Bootstrap support for G3JBK1 as seed ortholog is 100%.

Group of orthologs #1292. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:142 C.militaris:142

F6RCH7              	100.00%		G3JQV1              	100.00%
Bootstrap support for F6RCH7 as seed ortholog is 100%.
Bootstrap support for G3JQV1 as seed ortholog is 100%.

Group of orthologs #1293. Best score 142 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:142

H2XPV5              	100.00%		G3JK54              	100.00%
Bootstrap support for H2XPV5 as seed ortholog is 96%.
Bootstrap support for G3JK54 as seed ortholog is 100%.

Group of orthologs #1294. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 C.militaris:74

F6WVH9              	100.00%		G3J2V1              	100.00%
F6V5Y1              	16.39%		
F6YW02              	12.93%		
F6QJ74              	11.73%		
F6QJA2              	8.42%		
Bootstrap support for F6WVH9 as seed ortholog is 100%.
Bootstrap support for G3J2V1 as seed ortholog is 95%.

Group of orthologs #1295. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 C.militaris:141

F6WTV6              	100.00%		G3JRY5              	100.00%
                    	       		G3JG72              	35.38%
                    	       		G3J3T9              	23.52%
Bootstrap support for F6WTV6 as seed ortholog is 100%.
Bootstrap support for G3JRY5 as seed ortholog is 100%.

Group of orthologs #1296. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:141

H2XV38              	100.00%		G3J5I2              	100.00%
                    	       		G3JT11              	11.64%
Bootstrap support for H2XV38 as seed ortholog is 99%.
Bootstrap support for G3J5I2 as seed ortholog is 100%.

Group of orthologs #1297. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:141

F6Q7P2              	100.00%		G3J7X0              	100.00%
Bootstrap support for F6Q7P2 as seed ortholog is 98%.
Bootstrap support for G3J7X0 as seed ortholog is 100%.

Group of orthologs #1298. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 C.militaris:141

F6R180              	100.00%		G3JIW6              	100.00%
Bootstrap support for F6R180 as seed ortholog is 100%.
Bootstrap support for G3JIW6 as seed ortholog is 100%.

Group of orthologs #1299. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 C.militaris:141

F6SXZ3              	100.00%		G3JK57              	100.00%
Bootstrap support for F6SXZ3 as seed ortholog is 100%.
Bootstrap support for G3JK57 as seed ortholog is 100%.

Group of orthologs #1300. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:141 C.militaris:141

F7AFF3              	100.00%		G3JIS6              	100.00%
Bootstrap support for F7AFF3 as seed ortholog is 100%.
Bootstrap support for G3JIS6 as seed ortholog is 100%.

Group of orthologs #1301. Best score 141 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 C.militaris:57

F7A515              	100.00%		G3JQ80              	100.00%
Bootstrap support for F7A515 as seed ortholog is 55%.
Alternative seed ortholog is F6Z1B8 (6 bits away from this cluster)
Bootstrap support for G3JQ80 as seed ortholog is 94%.

Group of orthologs #1302. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 C.militaris:140

F6ZGV0              	100.00%		G3J6F1              	100.00%
Bootstrap support for F6ZGV0 as seed ortholog is 100%.
Bootstrap support for G3J6F1 as seed ortholog is 100%.

Group of orthologs #1303. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 C.militaris:140

H2XL93              	100.00%		G3J6H9              	100.00%
Bootstrap support for H2XL93 as seed ortholog is 100%.
Bootstrap support for G3J6H9 as seed ortholog is 100%.

Group of orthologs #1304. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:140

F6UTG5              	100.00%		G3JPY1              	100.00%
Bootstrap support for F6UTG5 as seed ortholog is 99%.
Bootstrap support for G3JPY1 as seed ortholog is 100%.

Group of orthologs #1305. Best score 140 bits
Score difference with first non-orthologous sequence - C.intestinalis:140 C.militaris:140

F6ZPU3              	100.00%		G3JNZ5              	100.00%
Bootstrap support for F6ZPU3 as seed ortholog is 100%.
Bootstrap support for G3JNZ5 as seed ortholog is 100%.

Group of orthologs #1306. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:139

F6W0S4              	100.00%		G3J5P3              	100.00%
H2Y2I8              	9.67%		
Bootstrap support for F6W0S4 as seed ortholog is 87%.
Bootstrap support for G3J5P3 as seed ortholog is 100%.

Group of orthologs #1307. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 C.militaris:139

F6Z897              	100.00%		G3J2Z2              	100.00%
                    	       		G3JGN1              	27.63%
Bootstrap support for F6Z897 as seed ortholog is 100%.
Bootstrap support for G3J2Z2 as seed ortholog is 100%.

Group of orthologs #1308. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 C.militaris:139

F6Y9G9              	100.00%		G3J7Q8              	100.00%
F7ADG5              	78.99%		
Bootstrap support for F6Y9G9 as seed ortholog is 100%.
Bootstrap support for G3J7Q8 as seed ortholog is 100%.

Group of orthologs #1309. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 C.militaris:139

F6RCD1              	100.00%		G3JCS8              	100.00%
Bootstrap support for F6RCD1 as seed ortholog is 100%.
Bootstrap support for G3JCS8 as seed ortholog is 100%.

Group of orthologs #1310. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 C.militaris:139

F6XWN6              	100.00%		G3JFN3              	100.00%
Bootstrap support for F6XWN6 as seed ortholog is 100%.
Bootstrap support for G3JFN3 as seed ortholog is 100%.

Group of orthologs #1311. Best score 139 bits
Score difference with first non-orthologous sequence - C.intestinalis:139 C.militaris:139

H2XZL8              	100.00%		G3J8G2              	100.00%
Bootstrap support for H2XZL8 as seed ortholog is 100%.
Bootstrap support for G3J8G2 as seed ortholog is 100%.

Group of orthologs #1312. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

F6R255              	100.00%		G3JA62              	100.00%
Bootstrap support for F6R255 as seed ortholog is 100%.
Bootstrap support for G3JA62 as seed ortholog is 100%.

Group of orthologs #1313. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

F6V580              	100.00%		G3J8C3              	100.00%
Bootstrap support for F6V580 as seed ortholog is 100%.
Bootstrap support for G3J8C3 as seed ortholog is 100%.

Group of orthologs #1314. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

F6Y2U7              	100.00%		G3J5L0              	100.00%
Bootstrap support for F6Y2U7 as seed ortholog is 100%.
Bootstrap support for G3J5L0 as seed ortholog is 100%.

Group of orthologs #1315. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

F6XG50              	100.00%		G3J8S3              	100.00%
Bootstrap support for F6XG50 as seed ortholog is 100%.
Bootstrap support for G3J8S3 as seed ortholog is 100%.

Group of orthologs #1316. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

F6ZSB0              	100.00%		G3JEM1              	100.00%
Bootstrap support for F6ZSB0 as seed ortholog is 100%.
Bootstrap support for G3JEM1 as seed ortholog is 100%.

Group of orthologs #1317. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

H2XM46              	100.00%		G3JFA2              	100.00%
Bootstrap support for H2XM46 as seed ortholog is 100%.
Bootstrap support for G3JFA2 as seed ortholog is 100%.

Group of orthologs #1318. Best score 138 bits
Score difference with first non-orthologous sequence - C.intestinalis:138 C.militaris:138

H2Y0D5              	100.00%		G3J761              	100.00%
Bootstrap support for H2Y0D5 as seed ortholog is 100%.
Bootstrap support for G3J761 as seed ortholog is 100%.

Group of orthologs #1319. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:46

F6RS86              	100.00%		G3J542              	100.00%
F7ARF4              	64.29%		G3JIL1              	30.00%
                    	       		G3JFM2              	25.20%
Bootstrap support for F6RS86 as seed ortholog is 100%.
Bootstrap support for G3J542 as seed ortholog is 87%.

Group of orthologs #1320. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:137

F7AFI4              	100.00%		G3JRD2              	100.00%
F6YCJ4              	77.86%		
F6YGS0              	62.14%		
Bootstrap support for F7AFI4 as seed ortholog is 100%.
Bootstrap support for G3JRD2 as seed ortholog is 100%.

Group of orthologs #1321. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:137

F6SDU1              	100.00%		G3J3J2              	100.00%
Bootstrap support for F6SDU1 as seed ortholog is 100%.
Bootstrap support for G3J3J2 as seed ortholog is 100%.

Group of orthologs #1322. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:85

F6W510              	100.00%		G3J438              	100.00%
Bootstrap support for F6W510 as seed ortholog is 100%.
Bootstrap support for G3J438 as seed ortholog is 94%.

Group of orthologs #1323. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:137

F6XT02              	100.00%		G3JGN8              	100.00%
Bootstrap support for F6XT02 as seed ortholog is 100%.
Bootstrap support for G3JGN8 as seed ortholog is 100%.

Group of orthologs #1324. Best score 137 bits
Score difference with first non-orthologous sequence - C.intestinalis:137 C.militaris:137

F7AUY7              	100.00%		G3JK05              	100.00%
Bootstrap support for F7AUY7 as seed ortholog is 100%.
Bootstrap support for G3JK05 as seed ortholog is 100%.

Group of orthologs #1325. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:41

F6VXK0              	100.00%		G3JRJ7              	100.00%
F7BDP7              	100.00%		G3JDD4              	100.00%
F6XKJ1              	67.03%		
L7N0R4              	62.43%		
F6XKL3              	61.62%		
F6U428              	33.78%		
H2XS77              	16.85%		
F6U973              	16.57%		
F6S2B0              	16.57%		
F7BEK9              	15.14%		
F6S294              	13.76%		
F7AWY7              	13.51%		
F6TXI5              	12.97%		
H2XZS1              	12.64%		
H2XUP4              	8.65%		
Bootstrap support for F6VXK0 as seed ortholog is 96%.
Bootstrap support for F7BDP7 as seed ortholog is 90%.
Bootstrap support for G3JRJ7 as seed ortholog is 90%.
Bootstrap support for G3JDD4 as seed ortholog is 68%.
Alternative seed ortholog is G3JMW1 (41 bits away from this cluster)

Group of orthologs #1326. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:67

F6WB20              	100.00%		G3JJV2              	100.00%
H2XJR2              	17.61%		G3JPD9              	10.31%
                    	       		G3JTT6              	9.82%
                    	       		G3J623              	9.33%
Bootstrap support for F6WB20 as seed ortholog is 100%.
Bootstrap support for G3JJV2 as seed ortholog is 98%.

Group of orthologs #1327. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:75

F6R9S1              	100.00%		G3JAT3              	100.00%
Bootstrap support for F6R9S1 as seed ortholog is 94%.
Bootstrap support for G3JAT3 as seed ortholog is 95%.

Group of orthologs #1328. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 C.militaris:136

F6UNM5              	100.00%		G3J9L6              	100.00%
Bootstrap support for F6UNM5 as seed ortholog is 79%.
Bootstrap support for G3J9L6 as seed ortholog is 100%.

Group of orthologs #1329. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:136

F6YA02              	100.00%		G3J4I6              	100.00%
Bootstrap support for F6YA02 as seed ortholog is 100%.
Bootstrap support for G3J4I6 as seed ortholog is 100%.

Group of orthologs #1330. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:136

F6WS50              	100.00%		G3J8A8              	100.00%
Bootstrap support for F6WS50 as seed ortholog is 100%.
Bootstrap support for G3J8A8 as seed ortholog is 100%.

Group of orthologs #1331. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:136

H2XVJ2              	100.00%		G3J5M5              	100.00%
Bootstrap support for H2XVJ2 as seed ortholog is 100%.
Bootstrap support for G3J5M5 as seed ortholog is 100%.

Group of orthologs #1332. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:136

F7B4V3              	100.00%		G3JQA3              	100.00%
Bootstrap support for F7B4V3 as seed ortholog is 100%.
Bootstrap support for G3JQA3 as seed ortholog is 100%.

Group of orthologs #1333. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:136

F7APT3              	100.00%		G3JV03              	100.00%
Bootstrap support for F7APT3 as seed ortholog is 100%.
Bootstrap support for G3JV03 as seed ortholog is 100%.

Group of orthologs #1334. Best score 136 bits
Score difference with first non-orthologous sequence - C.intestinalis:136 C.militaris:136

H2XPR5              	100.00%		G3JRR4              	100.00%
Bootstrap support for H2XPR5 as seed ortholog is 100%.
Bootstrap support for G3JRR4 as seed ortholog is 100%.

Group of orthologs #1335. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:34

F7B3V5              	100.00%		G3JS35              	100.00%
F6UVE4              	100.00%		G3J530              	100.00%
H2XPJ1              	27.95%		
F6S5X9              	23.96%		
F6W7J8              	17.79%		
Bootstrap support for F7B3V5 as seed ortholog is 100%.
Bootstrap support for F6UVE4 as seed ortholog is 100%.
Bootstrap support for G3JS35 as seed ortholog is 77%.
Bootstrap support for G3J530 as seed ortholog is 69%.
Alternative seed ortholog is G3J9H0 (34 bits away from this cluster)

Group of orthologs #1336. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:135

F6YFE4              	100.00%		G3J8H0              	100.00%
F6XJF3              	100.00%		G3JGX9              	100.00%
H2Y3G9              	29.53%		
F6YP84              	26.17%		
Bootstrap support for F6YFE4 as seed ortholog is 100%.
Bootstrap support for F6XJF3 as seed ortholog is 100%.
Bootstrap support for G3J8H0 as seed ortholog is 100%.
Bootstrap support for G3JGX9 as seed ortholog is 100%.

Group of orthologs #1337. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:34 C.militaris:6

F6TA22              	100.00%		G3J728              	100.00%
F6XFM9              	31.29%		
Bootstrap support for F6TA22 as seed ortholog is 75%.
Bootstrap support for G3J728 as seed ortholog is 56%.
Alternative seed ortholog is G3JF81 (6 bits away from this cluster)

Group of orthologs #1338. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:135

F6V5I4              	100.00%		G3J774              	100.00%
Bootstrap support for F6V5I4 as seed ortholog is 100%.
Bootstrap support for G3J774 as seed ortholog is 100%.

Group of orthologs #1339. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:76

F6ZPV8              	100.00%		G3J7J0              	100.00%
Bootstrap support for F6ZPV8 as seed ortholog is 99%.
Bootstrap support for G3J7J0 as seed ortholog is 98%.

Group of orthologs #1340. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:17

F6S1K1              	100.00%		G3JRU2              	100.00%
Bootstrap support for F6S1K1 as seed ortholog is 100%.
Bootstrap support for G3JRU2 as seed ortholog is 62%.
Alternative seed ortholog is G3JF27 (17 bits away from this cluster)

Group of orthologs #1341. Best score 135 bits
Score difference with first non-orthologous sequence - C.intestinalis:135 C.militaris:135

F6YXT8              	100.00%		G3JFF8              	100.00%
Bootstrap support for F6YXT8 as seed ortholog is 100%.
Bootstrap support for G3JFF8 as seed ortholog is 100%.

Group of orthologs #1342. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:31 C.militaris:44

F6PJV8              	100.00%		G3JLZ5              	100.00%
Bootstrap support for F6PJV8 as seed ortholog is 88%.
Bootstrap support for G3JLZ5 as seed ortholog is 98%.

Group of orthologs #1343. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.militaris:52

F6YL86              	100.00%		G3J578              	100.00%
Bootstrap support for F6YL86 as seed ortholog is 100%.
Bootstrap support for G3J578 as seed ortholog is 84%.

Group of orthologs #1344. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.militaris:134

F6SJF0              	100.00%		G3JLD8              	100.00%
Bootstrap support for F6SJF0 as seed ortholog is 100%.
Bootstrap support for G3JLD8 as seed ortholog is 100%.

Group of orthologs #1345. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:38 C.militaris:134

H2XTZ1              	100.00%		G3J9W0              	100.00%
Bootstrap support for H2XTZ1 as seed ortholog is 98%.
Bootstrap support for G3J9W0 as seed ortholog is 100%.

Group of orthologs #1346. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:134 C.militaris:93

H2XW02              	100.00%		G3J9G2              	100.00%
Bootstrap support for H2XW02 as seed ortholog is 100%.
Bootstrap support for G3J9G2 as seed ortholog is 100%.

Group of orthologs #1347. Best score 134 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:134

H2XUW4              	100.00%		G3JDL4              	100.00%
Bootstrap support for H2XUW4 as seed ortholog is 94%.
Bootstrap support for G3JDL4 as seed ortholog is 100%.

Group of orthologs #1348. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:14 C.militaris:133

F6V2A4              	100.00%		G3JN65              	100.00%
F6WAB5              	13.19%		
Bootstrap support for F6V2A4 as seed ortholog is 74%.
Alternative seed ortholog is F7BHG2 (14 bits away from this cluster)
Bootstrap support for G3JN65 as seed ortholog is 100%.

Group of orthologs #1349. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

F6PKJ4              	100.00%		G3JGQ9              	100.00%
Bootstrap support for F6PKJ4 as seed ortholog is 100%.
Bootstrap support for G3JGQ9 as seed ortholog is 100%.

Group of orthologs #1350. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

F6QPH0              	100.00%		G3JET3              	100.00%
Bootstrap support for F6QPH0 as seed ortholog is 100%.
Bootstrap support for G3JET3 as seed ortholog is 100%.

Group of orthologs #1351. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

F7B3X8              	100.00%		G3J399              	100.00%
Bootstrap support for F7B3X8 as seed ortholog is 100%.
Bootstrap support for G3J399 as seed ortholog is 100%.

Group of orthologs #1352. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

Q4H3U1              	100.00%		G3J9T3              	100.00%
Bootstrap support for Q4H3U1 as seed ortholog is 100%.
Bootstrap support for G3J9T3 as seed ortholog is 100%.

Group of orthologs #1353. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

H2Y184              	100.00%		G3JED5              	100.00%
Bootstrap support for H2Y184 as seed ortholog is 100%.
Bootstrap support for G3JED5 as seed ortholog is 100%.

Group of orthologs #1354. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

I6L2C8              	100.00%		G3JHB1              	100.00%
Bootstrap support for I6L2C8 as seed ortholog is 100%.
Bootstrap support for G3JHB1 as seed ortholog is 100%.

Group of orthologs #1355. Best score 133 bits
Score difference with first non-orthologous sequence - C.intestinalis:133 C.militaris:133

H2Y0N2              	100.00%		G3JSA4              	100.00%
Bootstrap support for H2Y0N2 as seed ortholog is 100%.
Bootstrap support for G3JSA4 as seed ortholog is 100%.

Group of orthologs #1356. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 C.militaris:132

F6U8F3              	100.00%		G3J9Z7              	100.00%
Bootstrap support for F6U8F3 as seed ortholog is 100%.
Bootstrap support for G3J9Z7 as seed ortholog is 100%.

Group of orthologs #1357. Best score 132 bits
Score difference with first non-orthologous sequence - C.intestinalis:132 C.militaris:132

F6XNX8              	100.00%		G3JMA5              	100.00%
Bootstrap support for F6XNX8 as seed ortholog is 100%.
Bootstrap support for G3JMA5 as seed ortholog is 100%.

Group of orthologs #1358. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:131

F7AK04              	100.00%		G3JEZ1              	100.00%
F6RQ16              	24.23%		
Bootstrap support for F7AK04 as seed ortholog is 100%.
Bootstrap support for G3JEZ1 as seed ortholog is 100%.

Group of orthologs #1359. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:131

F6QSH0              	100.00%		G3J5P2              	100.00%
Bootstrap support for F6QSH0 as seed ortholog is 100%.
Bootstrap support for G3J5P2 as seed ortholog is 100%.

Group of orthologs #1360. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:72

F6QZ03              	100.00%		G3J6Y9              	100.00%
Bootstrap support for F6QZ03 as seed ortholog is 100%.
Bootstrap support for G3J6Y9 as seed ortholog is 99%.

Group of orthologs #1361. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:131

F6RPW8              	100.00%		G3J5K9              	100.00%
Bootstrap support for F6RPW8 as seed ortholog is 100%.
Bootstrap support for G3J5K9 as seed ortholog is 100%.

Group of orthologs #1362. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:5 C.militaris:131

F6YDS2              	100.00%		G3J5T4              	100.00%
Bootstrap support for F6YDS2 as seed ortholog is 61%.
Alternative seed ortholog is F6SXS1 (5 bits away from this cluster)
Bootstrap support for G3J5T4 as seed ortholog is 100%.

Group of orthologs #1363. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:23

F6VCR2              	100.00%		G3JKS4              	100.00%
Bootstrap support for F6VCR2 as seed ortholog is 93%.
Bootstrap support for G3JKS4 as seed ortholog is 75%.

Group of orthologs #1364. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:131

F6UCW1              	100.00%		G3JRA8              	100.00%
Bootstrap support for F6UCW1 as seed ortholog is 100%.
Bootstrap support for G3JRA8 as seed ortholog is 100%.

Group of orthologs #1365. Best score 131 bits
Score difference with first non-orthologous sequence - C.intestinalis:131 C.militaris:131

F6ZYA6              	100.00%		G3JG55              	100.00%
Bootstrap support for F6ZYA6 as seed ortholog is 100%.
Bootstrap support for G3JG55 as seed ortholog is 100%.

Group of orthologs #1366. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 C.militaris:130

F6Q4X5              	100.00%		G3JHM9              	100.00%
Bootstrap support for F6Q4X5 as seed ortholog is 100%.
Bootstrap support for G3JHM9 as seed ortholog is 100%.

Group of orthologs #1367. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:84

F6SPH4              	100.00%		G3JQZ2              	100.00%
Bootstrap support for F6SPH4 as seed ortholog is 100%.
Bootstrap support for G3JQZ2 as seed ortholog is 100%.

Group of orthologs #1368. Best score 130 bits
Score difference with first non-orthologous sequence - C.intestinalis:130 C.militaris:77

F7A4L3              	100.00%		G3JFJ9              	100.00%
Bootstrap support for F7A4L3 as seed ortholog is 100%.
Bootstrap support for G3JFJ9 as seed ortholog is 99%.

Group of orthologs #1369. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:129

F6TLU2              	100.00%		G3JUJ8              	100.00%
F6TZG1              	34.30%		
H2XSF5              	17.72%		
Bootstrap support for F6TLU2 as seed ortholog is 79%.
Bootstrap support for G3JUJ8 as seed ortholog is 100%.

Group of orthologs #1370. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 C.militaris:129

F6PXD8              	100.00%		G3JN05              	100.00%
Bootstrap support for F6PXD8 as seed ortholog is 100%.
Bootstrap support for G3JN05 as seed ortholog is 100%.

Group of orthologs #1371. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 C.militaris:129

F6YSG2              	100.00%		G3J9H7              	100.00%
Bootstrap support for F6YSG2 as seed ortholog is 100%.
Bootstrap support for G3J9H7 as seed ortholog is 100%.

Group of orthologs #1372. Best score 129 bits
Score difference with first non-orthologous sequence - C.intestinalis:129 C.militaris:129

H2XQJ8              	100.00%		G3J3V0              	100.00%
Bootstrap support for H2XQJ8 as seed ortholog is 100%.
Bootstrap support for G3J3V0 as seed ortholog is 100%.

Group of orthologs #1373. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

F6YF45              	100.00%		G3J889              	100.00%
Bootstrap support for F6YF45 as seed ortholog is 100%.
Bootstrap support for G3J889 as seed ortholog is 100%.

Group of orthologs #1374. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

F6Z8U5              	100.00%		G3J8F9              	100.00%
Bootstrap support for F6Z8U5 as seed ortholog is 100%.
Bootstrap support for G3J8F9 as seed ortholog is 100%.

Group of orthologs #1375. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

F6VN53              	100.00%		G3JH99              	100.00%
Bootstrap support for F6VN53 as seed ortholog is 100%.
Bootstrap support for G3JH99 as seed ortholog is 100%.

Group of orthologs #1376. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:128

F7AZT4              	100.00%		G3J9L7              	100.00%
Bootstrap support for F7AZT4 as seed ortholog is 92%.
Bootstrap support for G3J9L7 as seed ortholog is 100%.

Group of orthologs #1377. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

F6ZMJ7              	100.00%		G3JHV9              	100.00%
Bootstrap support for F6ZMJ7 as seed ortholog is 100%.
Bootstrap support for G3JHV9 as seed ortholog is 100%.

Group of orthologs #1378. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

F6ZBK7              	100.00%		G3JJS3              	100.00%
Bootstrap support for F6ZBK7 as seed ortholog is 100%.
Bootstrap support for G3JJS3 as seed ortholog is 100%.

Group of orthologs #1379. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

H2XSZ1              	100.00%		G3J8G7              	100.00%
Bootstrap support for H2XSZ1 as seed ortholog is 100%.
Bootstrap support for G3J8G7 as seed ortholog is 100%.

Group of orthologs #1380. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:128

H2XKS6              	100.00%		G3JUQ2              	100.00%
Bootstrap support for H2XKS6 as seed ortholog is 100%.
Bootstrap support for G3JUQ2 as seed ortholog is 100%.

Group of orthologs #1381. Best score 128 bits
Score difference with first non-orthologous sequence - C.intestinalis:128 C.militaris:39

H2XYE0              	100.00%		G3JI76              	100.00%
Bootstrap support for H2XYE0 as seed ortholog is 100%.
Bootstrap support for G3JI76 as seed ortholog is 81%.

Group of orthologs #1382. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 C.militaris:127

F6XHR2              	100.00%		G3JN97              	100.00%
H2Y369              	30.38%		
F7AHM9              	29.28%		
F6VSV8              	7.27%		
Bootstrap support for F6XHR2 as seed ortholog is 100%.
Bootstrap support for G3JN97 as seed ortholog is 100%.

Group of orthologs #1383. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 C.militaris:127

F6X9U7              	100.00%		G3JAC6              	100.00%
Bootstrap support for F6X9U7 as seed ortholog is 100%.
Bootstrap support for G3JAC6 as seed ortholog is 100%.

Group of orthologs #1384. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:36 C.militaris:127

H2XME3              	100.00%		G3J2N5              	100.00%
Bootstrap support for H2XME3 as seed ortholog is 92%.
Bootstrap support for G3J2N5 as seed ortholog is 100%.

Group of orthologs #1385. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 C.militaris:127

F7BDS3              	100.00%		G3J9K6              	100.00%
Bootstrap support for F7BDS3 as seed ortholog is 100%.
Bootstrap support for G3J9K6 as seed ortholog is 100%.

Group of orthologs #1386. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 C.militaris:127

F7B383              	100.00%		G3JFE0              	100.00%
Bootstrap support for F7B383 as seed ortholog is 100%.
Bootstrap support for G3JFE0 as seed ortholog is 100%.

Group of orthologs #1387. Best score 127 bits
Score difference with first non-orthologous sequence - C.intestinalis:127 C.militaris:127

F7BBN1              	100.00%		G3JMC6              	100.00%
Bootstrap support for F7BBN1 as seed ortholog is 100%.
Bootstrap support for G3JMC6 as seed ortholog is 100%.

Group of orthologs #1388. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:39

H2Y3F1              	100.00%		G3JNZ9              	100.00%
                    	       		G3J8V1              	20.60%
                    	       		G3JIT2              	20.13%
                    	       		G3JQK3              	12.26%
Bootstrap support for H2Y3F1 as seed ortholog is 95%.
Bootstrap support for G3JNZ9 as seed ortholog is 87%.

Group of orthologs #1389. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.militaris:126

F6Q7D4              	100.00%		G3JAX2              	100.00%
Bootstrap support for F6Q7D4 as seed ortholog is 100%.
Bootstrap support for G3JAX2 as seed ortholog is 100%.

Group of orthologs #1390. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:74

F6RBK2              	100.00%		G3J950              	100.00%
Bootstrap support for F6RBK2 as seed ortholog is 93%.
Bootstrap support for G3J950 as seed ortholog is 96%.

Group of orthologs #1391. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 C.militaris:5

F6V934              	100.00%		G3J8I7              	100.00%
Bootstrap support for F6V934 as seed ortholog is 62%.
Alternative seed ortholog is F7A7A0 (9 bits away from this cluster)
Bootstrap support for G3J8I7 as seed ortholog is 43%.
Alternative seed ortholog is G3JD90 (5 bits away from this cluster)

Group of orthologs #1392. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.militaris:126

F6PIG9              	100.00%		G3JQ96              	100.00%
Bootstrap support for F6PIG9 as seed ortholog is 100%.
Bootstrap support for G3JQ96 as seed ortholog is 100%.

Group of orthologs #1393. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:126

F6U3F2              	100.00%		G3JJR6              	100.00%
Bootstrap support for F6U3F2 as seed ortholog is 99%.
Bootstrap support for G3JJR6 as seed ortholog is 100%.

Group of orthologs #1394. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.militaris:126

F6QWU8              	100.00%		G3JU23              	100.00%
Bootstrap support for F6QWU8 as seed ortholog is 100%.
Bootstrap support for G3JU23 as seed ortholog is 100%.

Group of orthologs #1395. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.militaris:126

F6TKH9              	100.00%		G3JP02              	100.00%
Bootstrap support for F6TKH9 as seed ortholog is 100%.
Bootstrap support for G3JP02 as seed ortholog is 100%.

Group of orthologs #1396. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:126 C.militaris:126

F6ZLL7              	100.00%		G3JPQ2              	100.00%
Bootstrap support for F6ZLL7 as seed ortholog is 100%.
Bootstrap support for G3JPQ2 as seed ortholog is 100%.

Group of orthologs #1397. Best score 126 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:126

H2XZK6              	100.00%		G3JUC0              	100.00%
Bootstrap support for H2XZK6 as seed ortholog is 98%.
Bootstrap support for G3JUC0 as seed ortholog is 100%.

Group of orthologs #1398. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:125

F7BB38              	100.00%		G3J5K6              	100.00%
H2Y2D9              	46.28%		G3J539              	40.64%
F6TL47              	40.18%		G3JPH2              	28.95%
F7A0M9              	37.07%		
F6THU3              	25.42%		
F6RLR6              	24.42%		
F6ZI41              	24.31%		
F6WNP2              	22.42%		
F7A8I5              	22.42%		
F6WRT4              	21.86%		
F7AR76              	21.64%		
H2Y3A4              	19.20%		
H2XKK3              	18.76%		
F6UFN6              	18.20%		
F6ZC68              	17.31%		
H2XW47              	14.21%		
F6VYD7              	12.10%		
F6TF08              	11.76%		
F6W8H6              	10.99%		
F6Y7G2              	9.21%		
H2XSP5              	8.66%		
F6R9K5              	7.21%		
F6TS80              	5.66%		
Bootstrap support for F7BB38 as seed ortholog is 83%.
Bootstrap support for G3J5K6 as seed ortholog is 100%.

Group of orthologs #1399. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:125

F6VTU7              	100.00%		G3JGT9              	100.00%
H2XPZ6              	41.54%		G3JUQ5              	18.10%
F6U0P5              	34.05%		
F6W9Y0              	28.60%		
F6W9J4              	12.84%		
Bootstrap support for F6VTU7 as seed ortholog is 100%.
Bootstrap support for G3JGT9 as seed ortholog is 100%.

Group of orthologs #1400. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:125

F6SRF9              	100.00%		G3JAS2              	100.00%
Bootstrap support for F6SRF9 as seed ortholog is 100%.
Bootstrap support for G3JAS2 as seed ortholog is 100%.

Group of orthologs #1401. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:30 C.militaris:26

F6QH75              	100.00%		G3JF97              	100.00%
Bootstrap support for F6QH75 as seed ortholog is 83%.
Bootstrap support for G3JF97 as seed ortholog is 76%.

Group of orthologs #1402. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:125

F7A4V3              	100.00%		G3J910              	100.00%
Bootstrap support for F7A4V3 as seed ortholog is 100%.
Bootstrap support for G3J910 as seed ortholog is 100%.

Group of orthologs #1403. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:125

F6X4K3              	100.00%		G3JHC7              	100.00%
Bootstrap support for F6X4K3 as seed ortholog is 100%.
Bootstrap support for G3JHC7 as seed ortholog is 100%.

Group of orthologs #1404. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:38 C.militaris:76

H2XPM6              	100.00%		G3J2M7              	100.00%
Bootstrap support for H2XPM6 as seed ortholog is 86%.
Bootstrap support for G3J2M7 as seed ortholog is 98%.

Group of orthologs #1405. Best score 125 bits
Score difference with first non-orthologous sequence - C.intestinalis:125 C.militaris:125

F6YUB3              	100.00%		G3JN06              	100.00%
Bootstrap support for F6YUB3 as seed ortholog is 100%.
Bootstrap support for G3JN06 as seed ortholog is 100%.

Group of orthologs #1406. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:124

F6RID1              	100.00%		G3JGL7              	100.00%
F6Z1A5              	33.57%		G3JCK3              	15.98%
H2Y3F7              	28.29%		G3JQU8              	14.24%
F6T010              	26.10%		G3JD19              	11.96%
F7BI82              	26.00%		G3JJ01              	7.17%
F6RBM9              	21.12%		G3JUI6              	6.09%
F6T5A7              	19.82%		G3JT73              	5.65%
Bootstrap support for F6RID1 as seed ortholog is 96%.
Bootstrap support for G3JGL7 as seed ortholog is 100%.

Group of orthologs #1407. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6QSC7              	100.00%		G3JAN0              	100.00%
                    	       		G3J5L9              	19.29%
Bootstrap support for F6QSC7 as seed ortholog is 100%.
Bootstrap support for G3JAN0 as seed ortholog is 100%.

Group of orthologs #1408. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:3

F6WW36              	100.00%		G3J2N1              	100.00%
                    	       		G3JI35              	100.00%
Bootstrap support for F6WW36 as seed ortholog is 99%.
Bootstrap support for G3J2N1 as seed ortholog is 46%.
Alternative seed ortholog is G3J5I7 (3 bits away from this cluster)
Bootstrap support for G3JI35 as seed ortholog is 52%.
Alternative seed ortholog is G3J5I7 (3 bits away from this cluster)

Group of orthologs #1409. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6S8X6              	100.00%		G3JG63              	100.00%
F6TP12              	100.00%		
Bootstrap support for F6S8X6 as seed ortholog is 100%.
Bootstrap support for F6TP12 as seed ortholog is 100%.
Bootstrap support for G3JG63 as seed ortholog is 100%.

Group of orthologs #1410. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6S4Y6              	100.00%		G3J595              	100.00%
Bootstrap support for F6S4Y6 as seed ortholog is 100%.
Bootstrap support for G3J595 as seed ortholog is 100%.

Group of orthologs #1411. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6RKZ8              	100.00%		G3J722              	100.00%
Bootstrap support for F6RKZ8 as seed ortholog is 100%.
Bootstrap support for G3J722 as seed ortholog is 100%.

Group of orthologs #1412. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 C.militaris:124

F6VDY1              	100.00%		G3J380              	100.00%
Bootstrap support for F6VDY1 as seed ortholog is 76%.
Bootstrap support for G3J380 as seed ortholog is 100%.

Group of orthologs #1413. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6PZM1              	100.00%		G3JEK4              	100.00%
Bootstrap support for F6PZM1 as seed ortholog is 100%.
Bootstrap support for G3JEK4 as seed ortholog is 100%.

Group of orthologs #1414. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6W248              	100.00%		G3J501              	100.00%
Bootstrap support for F6W248 as seed ortholog is 100%.
Bootstrap support for G3J501 as seed ortholog is 100%.

Group of orthologs #1415. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 C.militaris:124

F6Q909              	100.00%		G3JRM9              	100.00%
Bootstrap support for F6Q909 as seed ortholog is 56%.
Alternative seed ortholog is F6UT38 (9 bits away from this cluster)
Bootstrap support for G3JRM9 as seed ortholog is 100%.

Group of orthologs #1416. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

F6YU96              	100.00%		G3JAV2              	100.00%
Bootstrap support for F6YU96 as seed ortholog is 100%.
Bootstrap support for G3JAV2 as seed ortholog is 100%.

Group of orthologs #1417. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:19 C.militaris:124

H2XSI3              	100.00%		G3JQG4              	100.00%
Bootstrap support for H2XSI3 as seed ortholog is 82%.
Bootstrap support for G3JQG4 as seed ortholog is 100%.

Group of orthologs #1418. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:124 C.militaris:124

H2XUI3              	100.00%		G3JQN5              	100.00%
Bootstrap support for H2XUI3 as seed ortholog is 100%.
Bootstrap support for G3JQN5 as seed ortholog is 100%.

Group of orthologs #1419. Best score 124 bits
Score difference with first non-orthologous sequence - C.intestinalis:30 C.militaris:124

H2Y3K2              	100.00%		G3JH90              	100.00%
Bootstrap support for H2Y3K2 as seed ortholog is 93%.
Bootstrap support for G3JH90 as seed ortholog is 100%.

Group of orthologs #1420. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:62

H2XPK9              	100.00%		G3J3L3              	100.00%
F6X9C7              	52.86%		
H2XY34              	45.78%		
F6Y7T8              	24.25%		
Bootstrap support for H2XPK9 as seed ortholog is 94%.
Bootstrap support for G3J3L3 as seed ortholog is 98%.

Group of orthologs #1421. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 C.militaris:29

F6V8N0              	100.00%		G3JQH1              	100.00%
H2Y092              	11.48%		
Bootstrap support for F6V8N0 as seed ortholog is 100%.
Bootstrap support for G3JQH1 as seed ortholog is 75%.

Group of orthologs #1422. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 C.militaris:123

F7AEK6              	100.00%		G3JG13              	100.00%
Bootstrap support for F7AEK6 as seed ortholog is 100%.
Bootstrap support for G3JG13 as seed ortholog is 100%.

Group of orthologs #1423. Best score 123 bits
Score difference with first non-orthologous sequence - C.intestinalis:123 C.militaris:123

F7A9X0              	100.00%		G3JMI0              	100.00%
Bootstrap support for F7A9X0 as seed ortholog is 100%.
Bootstrap support for G3JMI0 as seed ortholog is 100%.

Group of orthologs #1424. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 C.militaris:27

F7BMM1              	100.00%		G3JME5              	100.00%
F6TN58              	71.59%		
F6QF82              	66.30%		
H2Y3S0              	64.98%		
H2Y084              	62.56%		
F6WZ78              	57.49%		
H2XMP8              	57.05%		
F7BMK8              	56.39%		
H2Y236              	54.41%		
H2XLT6              	33.04%		
F6PLI6              	28.63%		
F7AGX6              	21.59%		
F6Y9J0              	21.59%		
F6RVH7              	20.48%		
H2XX94              	19.38%		
F6R675              	19.16%		
F7APL0              	18.72%		
H2Y125              	18.06%		
F6XZ80              	18.06%		
H2XQA5              	16.52%		
F7ACY9              	13.44%		
F6UBW4              	13.00%		
F6S888              	12.11%		
H2XSC8              	11.89%		
F6UA80              	11.67%		
F6QE95              	10.35%		
F6VVT3              	7.93%		
H2Y1Z3              	7.05%		
F7ARK5              	5.29%		
Bootstrap support for F7BMM1 as seed ortholog is 83%.
Bootstrap support for G3JME5 as seed ortholog is 77%.

Group of orthologs #1425. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:122 C.militaris:122

F6YLW1              	100.00%		G3JH66              	100.00%
Bootstrap support for F6YLW1 as seed ortholog is 100%.
Bootstrap support for G3JH66 as seed ortholog is 100%.

Group of orthologs #1426. Best score 122 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.militaris:78

F7B012              	100.00%		G3JDE3              	100.00%
Bootstrap support for F7B012 as seed ortholog is 99%.
Bootstrap support for G3JDE3 as seed ortholog is 99%.

Group of orthologs #1427. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:121

L7N0S0              	100.00%		G3JAG6              	100.00%
F6PLM8              	74.92%		G3JAS8              	25.52%
H2XXR0              	56.66%		
H2XVS1              	54.79%		
H2Y171              	54.24%		
H2XJM1              	53.47%		
Bootstrap support for L7N0S0 as seed ortholog is 100%.
Bootstrap support for G3JAG6 as seed ortholog is 100%.

Group of orthologs #1428. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:2

H2XRG7              	100.00%		G3JHV2              	100.00%
                    	       		G3JAD1              	8.39%
                    	       		G3JNZ7              	7.36%
                    	       		G3JK66              	5.45%
Bootstrap support for H2XRG7 as seed ortholog is 100%.
Bootstrap support for G3JHV2 as seed ortholog is 47%.
Alternative seed ortholog is G3JTB8 (2 bits away from this cluster)

Group of orthologs #1429. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:121

F6TQ55              	100.00%		G3J7F6              	100.00%
Bootstrap support for F6TQ55 as seed ortholog is 100%.
Bootstrap support for G3J7F6 as seed ortholog is 100%.

Group of orthologs #1430. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:121 C.militaris:121

F6QYL2              	100.00%		G3JQ77              	100.00%
Bootstrap support for F6QYL2 as seed ortholog is 100%.
Bootstrap support for G3JQ77 as seed ortholog is 100%.

Group of orthologs #1431. Best score 121 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 C.militaris:45

F6RN78              	100.00%		G3JR28              	100.00%
Bootstrap support for F6RN78 as seed ortholog is 70%.
Alternative seed ortholog is H2Y0Q2 (15 bits away from this cluster)
Bootstrap support for G3JR28 as seed ortholog is 96%.

Group of orthologs #1432. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 C.militaris:120

F6ZST9              	100.00%		G3JFR4              	100.00%
F6Y782              	6.37%		G3JLK6              	47.47%
                    	       		G3JCF7              	10.84%
Bootstrap support for F6ZST9 as seed ortholog is 100%.
Bootstrap support for G3JFR4 as seed ortholog is 100%.

Group of orthologs #1433. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:39 C.militaris:12

H2XJL6              	100.00%		G3JFQ8              	100.00%
                    	       		G3JKP5              	100.00%
                    	       		G3JBQ5              	13.27%
Bootstrap support for H2XJL6 as seed ortholog is 89%.
Bootstrap support for G3JFQ8 as seed ortholog is 32%.
Alternative seed ortholog is G3JMW1 (12 bits away from this cluster)
Bootstrap support for G3JKP5 as seed ortholog is 66%.
Alternative seed ortholog is G3JMW1 (12 bits away from this cluster)

Group of orthologs #1434. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 C.militaris:120

F6X3L7              	100.00%		G3J7E7              	100.00%
Bootstrap support for F6X3L7 as seed ortholog is 100%.
Bootstrap support for G3J7E7 as seed ortholog is 100%.

Group of orthologs #1435. Best score 120 bits
Score difference with first non-orthologous sequence - C.intestinalis:120 C.militaris:120

F6SXN2              	100.00%		G3JKT7              	100.00%
Bootstrap support for F6SXN2 as seed ortholog is 100%.
Bootstrap support for G3JKT7 as seed ortholog is 100%.

Group of orthologs #1436. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:33

F6QLG8              	100.00%		G3JBI7              	100.00%
                    	       		G3J8H2              	10.91%
                    	       		G3JNY3              	5.73%
Bootstrap support for F6QLG8 as seed ortholog is 100%.
Bootstrap support for G3JBI7 as seed ortholog is 79%.

Group of orthologs #1437. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6PH72              	100.00%		G3JI02              	100.00%
Bootstrap support for F6PH72 as seed ortholog is 100%.
Bootstrap support for G3JI02 as seed ortholog is 100%.

Group of orthologs #1438. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6TBE2              	100.00%		G3JE25              	100.00%
Bootstrap support for F6TBE2 as seed ortholog is 100%.
Bootstrap support for G3JE25 as seed ortholog is 100%.

Group of orthologs #1439. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6WJT4              	100.00%		G3JBL7              	100.00%
Bootstrap support for F6WJT4 as seed ortholog is 100%.
Bootstrap support for G3JBL7 as seed ortholog is 100%.

Group of orthologs #1440. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6VPT6              	100.00%		G3JGG5              	100.00%
Bootstrap support for F6VPT6 as seed ortholog is 100%.
Bootstrap support for G3JGG5 as seed ortholog is 100%.

Group of orthologs #1441. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6VFA0              	100.00%		G3JHN5              	100.00%
Bootstrap support for F6VFA0 as seed ortholog is 100%.
Bootstrap support for G3JHN5 as seed ortholog is 100%.

Group of orthologs #1442. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:119

F6U3H2              	100.00%		G3JSK6              	100.00%
Bootstrap support for F6U3H2 as seed ortholog is 92%.
Bootstrap support for G3JSK6 as seed ortholog is 100%.

Group of orthologs #1443. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6Y7V1              	100.00%		G3JKV3              	100.00%
Bootstrap support for F6Y7V1 as seed ortholog is 100%.
Bootstrap support for G3JKV3 as seed ortholog is 100%.

Group of orthologs #1444. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6WK69              	100.00%		G3JQZ1              	100.00%
Bootstrap support for F6WK69 as seed ortholog is 100%.
Bootstrap support for G3JQZ1 as seed ortholog is 100%.

Group of orthologs #1445. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:119

F7B496              	100.00%		G3JIH9              	100.00%
Bootstrap support for F7B496 as seed ortholog is 98%.
Bootstrap support for G3JIH9 as seed ortholog is 100%.

Group of orthologs #1446. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6WH15              	100.00%		G3JV11              	100.00%
Bootstrap support for F6WH15 as seed ortholog is 100%.
Bootstrap support for G3JV11 as seed ortholog is 100%.

Group of orthologs #1447. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F6Z5W5              	100.00%		G3JNY8              	100.00%
Bootstrap support for F6Z5W5 as seed ortholog is 100%.
Bootstrap support for G3JNY8 as seed ortholog is 100%.

Group of orthologs #1448. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F7AKT1              	100.00%		G3JMV0              	100.00%
Bootstrap support for F7AKT1 as seed ortholog is 100%.
Bootstrap support for G3JMV0 as seed ortholog is 100%.

Group of orthologs #1449. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

H2XKF1              	100.00%		G3JK60              	100.00%
Bootstrap support for H2XKF1 as seed ortholog is 100%.
Bootstrap support for G3JK60 as seed ortholog is 100%.

Group of orthologs #1450. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F7A1T4              	100.00%		G3JU70              	100.00%
Bootstrap support for F7A1T4 as seed ortholog is 100%.
Bootstrap support for G3JU70 as seed ortholog is 100%.

Group of orthologs #1451. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

F7BDK3              	100.00%		G3JUD0              	100.00%
Bootstrap support for F7BDK3 as seed ortholog is 100%.
Bootstrap support for G3JUD0 as seed ortholog is 100%.

Group of orthologs #1452. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

Q4H2R3              	100.00%		G3J9U7              	100.00%
Bootstrap support for Q4H2R3 as seed ortholog is 100%.
Bootstrap support for G3J9U7 as seed ortholog is 100%.

Group of orthologs #1453. Best score 119 bits
Score difference with first non-orthologous sequence - C.intestinalis:119 C.militaris:119

H2XX64              	100.00%		G3JUE3              	100.00%
Bootstrap support for H2XX64 as seed ortholog is 100%.
Bootstrap support for G3JUE3 as seed ortholog is 100%.

Group of orthologs #1454. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.militaris:118

F6WGU2              	100.00%		G3JN13              	100.00%
F6T569              	48.04%		
F6YD46              	45.83%		
Bootstrap support for F6WGU2 as seed ortholog is 98%.
Bootstrap support for G3JN13 as seed ortholog is 100%.

Group of orthologs #1455. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:118

F6VKK3              	100.00%		G3J9V6              	100.00%
Bootstrap support for F6VKK3 as seed ortholog is 100%.
Bootstrap support for G3J9V6 as seed ortholog is 100%.

Group of orthologs #1456. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:118

F6ZYE8              	100.00%		G3J743              	100.00%
Bootstrap support for F6ZYE8 as seed ortholog is 100%.
Bootstrap support for G3J743 as seed ortholog is 100%.

Group of orthologs #1457. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:118

F6ZG04              	100.00%		G3JJ32              	100.00%
Bootstrap support for F6ZG04 as seed ortholog is 100%.
Bootstrap support for G3JJ32 as seed ortholog is 100%.

Group of orthologs #1458. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:118

F6Z8R5              	100.00%		G3JP52              	100.00%
Bootstrap support for F6Z8R5 as seed ortholog is 100%.
Bootstrap support for G3JP52 as seed ortholog is 100%.

Group of orthologs #1459. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:118

H2XPF4              	100.00%		G3JFS7              	100.00%
Bootstrap support for H2XPF4 as seed ortholog is 100%.
Bootstrap support for G3JFS7 as seed ortholog is 100%.

Group of orthologs #1460. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:118 C.militaris:118

H2XLA2              	100.00%		G3JJ87              	100.00%
Bootstrap support for H2XLA2 as seed ortholog is 100%.
Bootstrap support for G3JJ87 as seed ortholog is 100%.

Group of orthologs #1461. Best score 118 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:118

F7ASZ2              	100.00%		G3JRF0              	100.00%
Bootstrap support for F7ASZ2 as seed ortholog is 91%.
Bootstrap support for G3JRF0 as seed ortholog is 100%.

Group of orthologs #1462. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.militaris:117

F6QIV0              	100.00%		G3J9F9              	100.00%
Bootstrap support for F6QIV0 as seed ortholog is 100%.
Bootstrap support for G3J9F9 as seed ortholog is 100%.

Group of orthologs #1463. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:27 C.militaris:117

F6QXX8              	100.00%		G3JL81              	100.00%
Bootstrap support for F6QXX8 as seed ortholog is 98%.
Bootstrap support for G3JL81 as seed ortholog is 100%.

Group of orthologs #1464. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.militaris:117

F6V7G7              	100.00%		G3JMT1              	100.00%
Bootstrap support for F6V7G7 as seed ortholog is 100%.
Bootstrap support for G3JMT1 as seed ortholog is 100%.

Group of orthologs #1465. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:117 C.militaris:117

H2XWK5              	100.00%		G3J8Y6              	100.00%
Bootstrap support for H2XWK5 as seed ortholog is 100%.
Bootstrap support for G3J8Y6 as seed ortholog is 100%.

Group of orthologs #1466. Best score 117 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:9

F7B9X1              	100.00%		G3JQZ9              	100.00%
Bootstrap support for F7B9X1 as seed ortholog is 98%.
Bootstrap support for G3JQZ9 as seed ortholog is 59%.
Alternative seed ortholog is G3JTB8 (9 bits away from this cluster)

Group of orthologs #1467. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:71

H2XMC8              	100.00%		G3JP71              	100.00%
F6QC31              	45.38%		
F6YVH4              	8.79%		
Bootstrap support for H2XMC8 as seed ortholog is 100%.
Bootstrap support for G3JP71 as seed ortholog is 95%.

Group of orthologs #1468. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6RRD5              	100.00%		G3JER0              	100.00%
Bootstrap support for F6RRD5 as seed ortholog is 100%.
Bootstrap support for G3JER0 as seed ortholog is 100%.

Group of orthologs #1469. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6PHE6              	100.00%		G3JLX6              	100.00%
Bootstrap support for F6PHE6 as seed ortholog is 100%.
Bootstrap support for G3JLX6 as seed ortholog is 100%.

Group of orthologs #1470. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6RKR7              	100.00%		G3JJ23              	100.00%
Bootstrap support for F6RKR7 as seed ortholog is 100%.
Bootstrap support for G3JJ23 as seed ortholog is 100%.

Group of orthologs #1471. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6RRL3              	100.00%		G3JMH3              	100.00%
Bootstrap support for F6RRL3 as seed ortholog is 100%.
Bootstrap support for G3JMH3 as seed ortholog is 100%.

Group of orthologs #1472. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F7B4Q5              	100.00%		G3J3H5              	100.00%
Bootstrap support for F7B4Q5 as seed ortholog is 100%.
Bootstrap support for G3J3H5 as seed ortholog is 100%.

Group of orthologs #1473. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6YLZ5              	100.00%		G3JCZ4              	100.00%
Bootstrap support for F6YLZ5 as seed ortholog is 100%.
Bootstrap support for G3JCZ4 as seed ortholog is 100%.

Group of orthologs #1474. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6WII1              	100.00%		G3JJE4              	100.00%
Bootstrap support for F6WII1 as seed ortholog is 100%.
Bootstrap support for G3JJE4 as seed ortholog is 100%.

Group of orthologs #1475. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6YGD1              	100.00%		G3JJ19              	100.00%
Bootstrap support for F6YGD1 as seed ortholog is 100%.
Bootstrap support for G3JJ19 as seed ortholog is 100%.

Group of orthologs #1476. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

F6ZQH5              	100.00%		G3JPI8              	100.00%
Bootstrap support for F6ZQH5 as seed ortholog is 100%.
Bootstrap support for G3JPI8 as seed ortholog is 100%.

Group of orthologs #1477. Best score 116 bits
Score difference with first non-orthologous sequence - C.intestinalis:116 C.militaris:116

H2XLK9              	100.00%		G3JH69              	100.00%
Bootstrap support for H2XLK9 as seed ortholog is 100%.
Bootstrap support for G3JH69 as seed ortholog is 100%.

Group of orthologs #1478. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:115

F6VQB3              	100.00%		G3JMG9              	100.00%
H2XML0              	52.29%		
Bootstrap support for F6VQB3 as seed ortholog is 100%.
Bootstrap support for G3JMG9 as seed ortholog is 100%.

Group of orthologs #1479. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:115

F6QTI2              	100.00%		G3J6J0              	100.00%
Bootstrap support for F6QTI2 as seed ortholog is 100%.
Bootstrap support for G3J6J0 as seed ortholog is 100%.

Group of orthologs #1480. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:115

F6XMX2              	100.00%		G3JQA9              	100.00%
Bootstrap support for F6XMX2 as seed ortholog is 100%.
Bootstrap support for G3JQA9 as seed ortholog is 100%.

Group of orthologs #1481. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:61

H2XWC1              	100.00%		G3JC95              	100.00%
Bootstrap support for H2XWC1 as seed ortholog is 100%.
Bootstrap support for G3JC95 as seed ortholog is 98%.

Group of orthologs #1482. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:4 C.militaris:115

H2Y1N7              	100.00%		G3J8T2              	100.00%
Bootstrap support for H2Y1N7 as seed ortholog is 55%.
Alternative seed ortholog is F6RM35 (4 bits away from this cluster)
Bootstrap support for G3J8T2 as seed ortholog is 100%.

Group of orthologs #1483. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:115

Q4H2Q4              	100.00%		G3J667              	100.00%
Bootstrap support for Q4H2Q4 as seed ortholog is 100%.
Bootstrap support for G3J667 as seed ortholog is 100%.

Group of orthologs #1484. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:115

F7BA39              	100.00%		G3JTR2              	100.00%
Bootstrap support for F7BA39 as seed ortholog is 100%.
Bootstrap support for G3JTR2 as seed ortholog is 100%.

Group of orthologs #1485. Best score 115 bits
Score difference with first non-orthologous sequence - C.intestinalis:115 C.militaris:115

H2Y1H3              	100.00%		G3JE60              	100.00%
Bootstrap support for H2Y1H3 as seed ortholog is 100%.
Bootstrap support for G3JE60 as seed ortholog is 100%.

Group of orthologs #1486. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:114

F6W1X7              	100.00%		G3J5K8              	100.00%
F6Z9B3              	20.99%		
Bootstrap support for F6W1X7 as seed ortholog is 100%.
Bootstrap support for G3J5K8 as seed ortholog is 100%.

Group of orthologs #1487. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:114

F6UEE4              	100.00%		G3J949              	100.00%
Bootstrap support for F6UEE4 as seed ortholog is 100%.
Bootstrap support for G3J949 as seed ortholog is 100%.

Group of orthologs #1488. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:114

F6VSM2              	100.00%		G3J6H4              	100.00%
Bootstrap support for F6VSM2 as seed ortholog is 100%.
Bootstrap support for G3J6H4 as seed ortholog is 100%.

Group of orthologs #1489. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:114

F6VMC6              	100.00%		G3J853              	100.00%
Bootstrap support for F6VMC6 as seed ortholog is 100%.
Bootstrap support for G3J853 as seed ortholog is 100%.

Group of orthologs #1490. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:22 C.militaris:114

F6Z8S6              	100.00%		G3JCF5              	100.00%
Bootstrap support for F6Z8S6 as seed ortholog is 78%.
Bootstrap support for G3JCF5 as seed ortholog is 100%.

Group of orthologs #1491. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:53

H2XSQ8              	100.00%		G3J9T1              	100.00%
Bootstrap support for H2XSQ8 as seed ortholog is 100%.
Bootstrap support for G3J9T1 as seed ortholog is 86%.

Group of orthologs #1492. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:114

H2Y0C3              	100.00%		G3J952              	100.00%
Bootstrap support for H2Y0C3 as seed ortholog is 100%.
Bootstrap support for G3J952 as seed ortholog is 100%.

Group of orthologs #1493. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:28 C.militaris:114

H2Y2E7              	100.00%		G3J8F2              	100.00%
Bootstrap support for H2Y2E7 as seed ortholog is 81%.
Bootstrap support for G3J8F2 as seed ortholog is 100%.

Group of orthologs #1494. Best score 114 bits
Score difference with first non-orthologous sequence - C.intestinalis:114 C.militaris:114

Q1RPU6              	100.00%		G3JA24              	100.00%
Bootstrap support for Q1RPU6 as seed ortholog is 100%.
Bootstrap support for G3JA24 as seed ortholog is 100%.

Group of orthologs #1495. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6PI53              	100.00%		G3J8Z4              	100.00%
F7B963              	68.26%		
H2XPZ0              	12.57%		
Bootstrap support for F6PI53 as seed ortholog is 100%.
Bootstrap support for G3J8Z4 as seed ortholog is 100%.

Group of orthologs #1496. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

H2XRT9              	100.00%		G3JRE4              	100.00%
F6UAS2              	13.71%		
F6S8N9              	10.12%		
Bootstrap support for H2XRT9 as seed ortholog is 100%.
Bootstrap support for G3JRE4 as seed ortholog is 100%.

Group of orthologs #1497. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:17 C.militaris:113

F6W804              	100.00%		G3J713              	100.00%
F6Q9F4              	30.17%		
Bootstrap support for F6W804 as seed ortholog is 68%.
Alternative seed ortholog is F7A7R4 (17 bits away from this cluster)
Bootstrap support for G3J713 as seed ortholog is 100%.

Group of orthologs #1498. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6RRI2              	100.00%		G3J3R0              	100.00%
Bootstrap support for F6RRI2 as seed ortholog is 100%.
Bootstrap support for G3J3R0 as seed ortholog is 100%.

Group of orthologs #1499. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6TJS2              	100.00%		G3J5C5              	100.00%
Bootstrap support for F6TJS2 as seed ortholog is 100%.
Bootstrap support for G3J5C5 as seed ortholog is 100%.

Group of orthologs #1500. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:34 C.militaris:113

F6V779              	100.00%		G3J7R6              	100.00%
Bootstrap support for F6V779 as seed ortholog is 75%.
Bootstrap support for G3J7R6 as seed ortholog is 100%.

Group of orthologs #1501. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6TCF1              	100.00%		G3JF50              	100.00%
Bootstrap support for F6TCF1 as seed ortholog is 100%.
Bootstrap support for G3JF50 as seed ortholog is 100%.

Group of orthologs #1502. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6V1C0              	100.00%		G3JHU6              	100.00%
Bootstrap support for F6V1C0 as seed ortholog is 100%.
Bootstrap support for G3JHU6 as seed ortholog is 100%.

Group of orthologs #1503. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:14

F6XWK4              	100.00%		G3JCL5              	100.00%
Bootstrap support for F6XWK4 as seed ortholog is 92%.
Bootstrap support for G3JCL5 as seed ortholog is 36%.
Alternative seed ortholog is G3JS88 (14 bits away from this cluster)

Group of orthologs #1504. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6WPY5              	100.00%		G3JHY5              	100.00%
Bootstrap support for F6WPY5 as seed ortholog is 100%.
Bootstrap support for G3JHY5 as seed ortholog is 100%.

Group of orthologs #1505. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:41

F6VLD0              	100.00%		G3JTW2              	100.00%
Bootstrap support for F6VLD0 as seed ortholog is 100%.
Bootstrap support for G3JTW2 as seed ortholog is 86%.

Group of orthologs #1506. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6XS68              	100.00%		G3JQX4              	100.00%
Bootstrap support for F6XS68 as seed ortholog is 100%.
Bootstrap support for G3JQX4 as seed ortholog is 100%.

Group of orthologs #1507. Best score 113 bits
Score difference with first non-orthologous sequence - C.intestinalis:113 C.militaris:113

F6YW80              	100.00%		G3JT81              	100.00%
Bootstrap support for F6YW80 as seed ortholog is 100%.
Bootstrap support for G3JT81 as seed ortholog is 100%.

Group of orthologs #1508. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

F6W7L1              	100.00%		G3JBP3              	100.00%
F6W833              	100.00%		G3JID4              	100.00%
F6XCJ9              	76.37%		
H2Y1N3              	76.28%		
L7N0R6              	72.86%		
F6V5T4              	40.30%		
F6VSX4              	40.30%		
Bootstrap support for F6W7L1 as seed ortholog is 100%.
Bootstrap support for F6W833 as seed ortholog is 100%.
Bootstrap support for G3JBP3 as seed ortholog is 100%.
Bootstrap support for G3JID4 as seed ortholog is 100%.

Group of orthologs #1509. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:112

F6S909              	100.00%		G3JIF7              	100.00%
F6S925              	100.00%		G3J4M8              	100.00%
Q4H398              	37.50%		
Q4H396              	25.16%		
Bootstrap support for F6S909 as seed ortholog is 87%.
Bootstrap support for F6S925 as seed ortholog is 85%.
Bootstrap support for G3JIF7 as seed ortholog is 100%.
Bootstrap support for G3J4M8 as seed ortholog is 100%.

Group of orthologs #1510. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

F6PMM3              	100.00%		G3J6J3              	100.00%
Bootstrap support for F6PMM3 as seed ortholog is 100%.
Bootstrap support for G3J6J3 as seed ortholog is 100%.

Group of orthologs #1511. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

F6T8R8              	100.00%		G3J7K7              	100.00%
Bootstrap support for F6T8R8 as seed ortholog is 100%.
Bootstrap support for G3J7K7 as seed ortholog is 100%.

Group of orthologs #1512. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

F6Q8U3              	100.00%		G3JDX2              	100.00%
Bootstrap support for F6Q8U3 as seed ortholog is 100%.
Bootstrap support for G3JDX2 as seed ortholog is 100%.

Group of orthologs #1513. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

F6TGX7              	100.00%		G3JIH4              	100.00%
Bootstrap support for F6TGX7 as seed ortholog is 100%.
Bootstrap support for G3JIH4 as seed ortholog is 100%.

Group of orthologs #1514. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

F6WWX5              	100.00%		G3JCP3              	100.00%
Bootstrap support for F6WWX5 as seed ortholog is 100%.
Bootstrap support for G3JCP3 as seed ortholog is 100%.

Group of orthologs #1515. Best score 112 bits
Score difference with first non-orthologous sequence - C.intestinalis:112 C.militaris:112

H2Y3J4              	100.00%		G3JUM5              	100.00%
Bootstrap support for H2Y3J4 as seed ortholog is 100%.
Bootstrap support for G3JUM5 as seed ortholog is 100%.

Group of orthologs #1516. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:33 C.militaris:111

F6U1Q3              	100.00%		G3J528              	100.00%
Bootstrap support for F6U1Q3 as seed ortholog is 86%.
Bootstrap support for G3J528 as seed ortholog is 100%.

Group of orthologs #1517. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 C.militaris:111

F6PLX2              	100.00%		G3JHY0              	100.00%
Bootstrap support for F6PLX2 as seed ortholog is 100%.
Bootstrap support for G3JHY0 as seed ortholog is 100%.

Group of orthologs #1518. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 C.militaris:2

F6QC45              	100.00%		G3JHM6              	100.00%
Bootstrap support for F6QC45 as seed ortholog is 94%.
Bootstrap support for G3JHM6 as seed ortholog is 51%.
Alternative seed ortholog is G3JQF3 (2 bits away from this cluster)

Group of orthologs #1519. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 C.militaris:111

F6QR08              	100.00%		G3JL33              	100.00%
Bootstrap support for F6QR08 as seed ortholog is 100%.
Bootstrap support for G3JL33 as seed ortholog is 100%.

Group of orthologs #1520. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 C.militaris:111

F7BPM3              	100.00%		G3JML9              	100.00%
Bootstrap support for F7BPM3 as seed ortholog is 100%.
Bootstrap support for G3JML9 as seed ortholog is 100%.

Group of orthologs #1521. Best score 111 bits
Score difference with first non-orthologous sequence - C.intestinalis:111 C.militaris:111

F7AI05              	100.00%		G3JUU1              	100.00%
Bootstrap support for F7AI05 as seed ortholog is 100%.
Bootstrap support for G3JUU1 as seed ortholog is 100%.

Group of orthologs #1522. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 C.militaris:110

F6WUG3              	100.00%		G3J5E5              	100.00%
Bootstrap support for F6WUG3 as seed ortholog is 100%.
Bootstrap support for G3J5E5 as seed ortholog is 100%.

Group of orthologs #1523. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 C.militaris:110

F6Y043              	100.00%		G3J463              	100.00%
Bootstrap support for F6Y043 as seed ortholog is 100%.
Bootstrap support for G3J463 as seed ortholog is 100%.

Group of orthologs #1524. Best score 110 bits
Score difference with first non-orthologous sequence - C.intestinalis:110 C.militaris:110

F6XKZ6              	100.00%		G3JD01              	100.00%
Bootstrap support for F6XKZ6 as seed ortholog is 100%.
Bootstrap support for G3JD01 as seed ortholog is 100%.

Group of orthologs #1525. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:33

F6QAL4              	100.00%		G3JDM6              	100.00%
F6QAM3              	100.00%		G3JCY2              	100.00%
F6X593              	100.00%		
F6X1X1              	47.14%		
F6SL89              	20.25%		
Bootstrap support for F6QAL4 as seed ortholog is 100%.
Bootstrap support for F6QAM3 as seed ortholog is 100%.
Bootstrap support for F6X593 as seed ortholog is 100%.
Bootstrap support for G3JDM6 as seed ortholog is 81%.
Bootstrap support for G3JCY2 as seed ortholog is 48%.
Alternative seed ortholog is G3JN99 (33 bits away from this cluster)

Group of orthologs #1526. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

F6T8A4              	100.00%		G3JAB9              	100.00%
Bootstrap support for F6T8A4 as seed ortholog is 100%.
Bootstrap support for G3JAB9 as seed ortholog is 100%.

Group of orthologs #1527. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

F6VXS0              	100.00%		G3JDY1              	100.00%
Bootstrap support for F6VXS0 as seed ortholog is 100%.
Bootstrap support for G3JDY1 as seed ortholog is 100%.

Group of orthologs #1528. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

H2XK69              	100.00%		G3J5Z1              	100.00%
Bootstrap support for H2XK69 as seed ortholog is 100%.
Bootstrap support for G3J5Z1 as seed ortholog is 100%.

Group of orthologs #1529. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

H2XRY8              	100.00%		G3J3X0              	100.00%
Bootstrap support for H2XRY8 as seed ortholog is 100%.
Bootstrap support for G3J3X0 as seed ortholog is 100%.

Group of orthologs #1530. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

H2XM66              	100.00%		G3J9D9              	100.00%
Bootstrap support for H2XM66 as seed ortholog is 100%.
Bootstrap support for G3J9D9 as seed ortholog is 100%.

Group of orthologs #1531. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

F7A912              	100.00%		G3JHK7              	100.00%
Bootstrap support for F7A912 as seed ortholog is 100%.
Bootstrap support for G3JHK7 as seed ortholog is 100%.

Group of orthologs #1532. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

Q1RL40              	100.00%		G3J359              	100.00%
Bootstrap support for Q1RL40 as seed ortholog is 100%.
Bootstrap support for G3J359 as seed ortholog is 100%.

Group of orthologs #1533. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

F7BI62              	100.00%		G3JSR4              	100.00%
Bootstrap support for F7BI62 as seed ortholog is 100%.
Bootstrap support for G3JSR4 as seed ortholog is 100%.

Group of orthologs #1534. Best score 109 bits
Score difference with first non-orthologous sequence - C.intestinalis:109 C.militaris:109

Q4H2R5              	100.00%		G3JCX9              	100.00%
Bootstrap support for Q4H2R5 as seed ortholog is 100%.
Bootstrap support for G3JCX9 as seed ortholog is 100%.

Group of orthologs #1535. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 C.militaris:49

H2Y2K3              	100.00%		G3JI25              	100.00%
H2Y0Z7              	63.74%		G3J8J0              	40.29%
H2XPY7              	54.44%		G3J8J4              	21.67%
H2XVE2              	45.56%		G3JFL3              	12.19%
                    	       		G3J7V6              	9.82%
                    	       		G3JRW6              	6.43%
Bootstrap support for H2Y2K3 as seed ortholog is 100%.
Bootstrap support for G3JI25 as seed ortholog is 85%.

Group of orthologs #1536. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 C.militaris:108

F6TSS8              	100.00%		G3JIR4              	100.00%
                    	       		G3JM18              	30.88%
Bootstrap support for F6TSS8 as seed ortholog is 100%.
Bootstrap support for G3JIR4 as seed ortholog is 100%.

Group of orthologs #1537. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 C.militaris:108

F6W023              	100.00%		G3JH68              	100.00%
Bootstrap support for F6W023 as seed ortholog is 100%.
Bootstrap support for G3JH68 as seed ortholog is 100%.

Group of orthologs #1538. Best score 108 bits
Score difference with first non-orthologous sequence - C.intestinalis:108 C.militaris:108

H2XYG3              	100.00%		G3J3R1              	100.00%
Bootstrap support for H2XYG3 as seed ortholog is 100%.
Bootstrap support for G3J3R1 as seed ortholog is 100%.

Group of orthologs #1539. Best score 107 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:107

F6RT01              	100.00%		G3JE38              	100.00%
Bootstrap support for F6RT01 as seed ortholog is 100%.
Bootstrap support for G3JE38 as seed ortholog is 100%.

Group of orthologs #1540. Best score 107 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:107

F6W6K9              	100.00%		G3J9N0              	100.00%
Bootstrap support for F6W6K9 as seed ortholog is 100%.
Bootstrap support for G3J9N0 as seed ortholog is 100%.

Group of orthologs #1541. Best score 107 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:107

F6ZQG8              	100.00%		G3JDS6              	100.00%
Bootstrap support for F6ZQG8 as seed ortholog is 100%.
Bootstrap support for G3JDS6 as seed ortholog is 100%.

Group of orthologs #1542. Best score 107 bits
Score difference with first non-orthologous sequence - C.intestinalis:107 C.militaris:107

F6Z0V4              	100.00%		G3JK91              	100.00%
Bootstrap support for F6Z0V4 as seed ortholog is 100%.
Bootstrap support for G3JK91 as seed ortholog is 100%.

Group of orthologs #1543. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:38

F6PTH0              	100.00%		G3J406              	100.00%
F6RPK0              	100.00%		G3JB43              	100.00%
F6PTW3              	71.90%		G3J2Y7              	5.54%
F6PUC9              	69.05%		
F6RPI4              	64.30%		
F6U472              	6.65%		
Bootstrap support for F6PTH0 as seed ortholog is 91%.
Bootstrap support for F6RPK0 as seed ortholog is 73%.
Alternative seed ortholog is F6RYU3 (47 bits away from this cluster)
Bootstrap support for G3J406 as seed ortholog is 86%.
Bootstrap support for G3JB43 as seed ortholog is 74%.
Alternative seed ortholog is G3J6K6 (38 bits away from this cluster)

Group of orthologs #1544. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

F6PPJ7              	100.00%		G3JNN8              	100.00%
Bootstrap support for F6PPJ7 as seed ortholog is 100%.
Bootstrap support for G3JNN8 as seed ortholog is 100%.

Group of orthologs #1545. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

F6YF30              	100.00%		G3J977              	100.00%
Bootstrap support for F6YF30 as seed ortholog is 100%.
Bootstrap support for G3J977 as seed ortholog is 100%.

Group of orthologs #1546. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

F6YMZ5              	100.00%		G3JBM5              	100.00%
Bootstrap support for F6YMZ5 as seed ortholog is 100%.
Bootstrap support for G3JBM5 as seed ortholog is 100%.

Group of orthologs #1547. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

F7BQ69              	100.00%		G3J3Y5              	100.00%
Bootstrap support for F7BQ69 as seed ortholog is 100%.
Bootstrap support for G3J3Y5 as seed ortholog is 100%.

Group of orthologs #1548. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

F6UFW3              	100.00%		G3JM51              	100.00%
Bootstrap support for F6UFW3 as seed ortholog is 100%.
Bootstrap support for G3JM51 as seed ortholog is 100%.

Group of orthologs #1549. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

F6WF37              	100.00%		G3JQ17              	100.00%
Bootstrap support for F6WF37 as seed ortholog is 100%.
Bootstrap support for G3JQ17 as seed ortholog is 100%.

Group of orthologs #1550. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

H2XRU0              	100.00%		G3J9I6              	100.00%
Bootstrap support for H2XRU0 as seed ortholog is 100%.
Bootstrap support for G3J9I6 as seed ortholog is 100%.

Group of orthologs #1551. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

H2XR04              	100.00%		G3JIP4              	100.00%
Bootstrap support for H2XR04 as seed ortholog is 100%.
Bootstrap support for G3JIP4 as seed ortholog is 100%.

Group of orthologs #1552. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

H2Y216              	100.00%		G3J875              	100.00%
Bootstrap support for H2Y216 as seed ortholog is 100%.
Bootstrap support for G3J875 as seed ortholog is 100%.

Group of orthologs #1553. Best score 106 bits
Score difference with first non-orthologous sequence - C.intestinalis:106 C.militaris:106

H2XR12              	100.00%		G3JRP6              	100.00%
Bootstrap support for H2XR12 as seed ortholog is 100%.
Bootstrap support for G3JRP6 as seed ortholog is 100%.

Group of orthologs #1554. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:105

F6Y3T4              	100.00%		G3J9X6              	100.00%
F6Y3U3              	27.93%		
Bootstrap support for F6Y3T4 as seed ortholog is 100%.
Bootstrap support for G3J9X6 as seed ortholog is 100%.

Group of orthologs #1555. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:105

F6PHR7              	100.00%		G3J510              	100.00%
Bootstrap support for F6PHR7 as seed ortholog is 100%.
Bootstrap support for G3J510 as seed ortholog is 100%.

Group of orthologs #1556. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:64

F6VBS7              	100.00%		G3J5J7              	100.00%
Bootstrap support for F6VBS7 as seed ortholog is 100%.
Bootstrap support for G3J5J7 as seed ortholog is 99%.

Group of orthologs #1557. Best score 105 bits
Score difference with first non-orthologous sequence - C.intestinalis:105 C.militaris:105

F6ZT62              	100.00%		G3JPL0              	100.00%
Bootstrap support for F6ZT62 as seed ortholog is 100%.
Bootstrap support for G3JPL0 as seed ortholog is 100%.

Group of orthologs #1558. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:104

F6V055              	100.00%		G3J6Z8              	100.00%
F6SZ94              	22.17%		
Bootstrap support for F6V055 as seed ortholog is 100%.
Bootstrap support for G3J6Z8 as seed ortholog is 100%.

Group of orthologs #1559. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:20

F6U6T9              	100.00%		G3JND6              	100.00%
                    	       		G3J549              	8.56%
Bootstrap support for F6U6T9 as seed ortholog is 100%.
Bootstrap support for G3JND6 as seed ortholog is 72%.
Alternative seed ortholog is G3J531 (20 bits away from this cluster)

Group of orthologs #1560. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:104

F6QBK7              	100.00%		G3J508              	100.00%
Bootstrap support for F6QBK7 as seed ortholog is 100%.
Bootstrap support for G3J508 as seed ortholog is 100%.

Group of orthologs #1561. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:104

F6PU76              	100.00%		G3JCW9              	100.00%
Bootstrap support for F6PU76 as seed ortholog is 100%.
Bootstrap support for G3JCW9 as seed ortholog is 100%.

Group of orthologs #1562. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:104

F6Q521              	100.00%		G3JCZ3              	100.00%
Bootstrap support for F6Q521 as seed ortholog is 100%.
Bootstrap support for G3JCZ3 as seed ortholog is 100%.

Group of orthologs #1563. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:40 C.militaris:41

F7AH68              	100.00%		G3J990              	100.00%
Bootstrap support for F7AH68 as seed ortholog is 91%.
Bootstrap support for G3J990 as seed ortholog is 94%.

Group of orthologs #1564. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:104 C.militaris:104

F7B7K2              	100.00%		G3JLH0              	100.00%
Bootstrap support for F7B7K2 as seed ortholog is 100%.
Bootstrap support for G3JLH0 as seed ortholog is 100%.

Group of orthologs #1565. Best score 104 bits
Score difference with first non-orthologous sequence - C.intestinalis:31 C.militaris:104

H2XSL4              	100.00%		G3JSM3              	100.00%
Bootstrap support for H2XSL4 as seed ortholog is 84%.
Bootstrap support for G3JSM3 as seed ortholog is 100%.

Group of orthologs #1566. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:103

F6Q966              	100.00%		G3JMQ0              	100.00%
F6ULA0              	16.67%		
F6VTQ0              	16.55%		
F6SVU6              	15.12%		
H2XS65              	14.76%		
L7N0U5              	11.67%		
F6PND8              	8.81%		
H2Y3K6              	8.69%		
H2XKG0              	8.57%		
H2Y1F0              	6.31%		
Bootstrap support for F6Q966 as seed ortholog is 100%.
Bootstrap support for G3JMQ0 as seed ortholog is 100%.

Group of orthologs #1567. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:103

F6R2C6              	100.00%		G3J302              	100.00%
Bootstrap support for F6R2C6 as seed ortholog is 100%.
Bootstrap support for G3J302 as seed ortholog is 100%.

Group of orthologs #1568. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:103

F6Q3E6              	100.00%		G3JMT6              	100.00%
Bootstrap support for F6Q3E6 as seed ortholog is 100%.
Bootstrap support for G3JMT6 as seed ortholog is 100%.

Group of orthologs #1569. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:103

F6SS76              	100.00%		G3JKH8              	100.00%
Bootstrap support for F6SS76 as seed ortholog is 100%.
Bootstrap support for G3JKH8 as seed ortholog is 100%.

Group of orthologs #1570. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:4 C.militaris:14

F6YGF8              	100.00%		G3JQ42              	100.00%
Bootstrap support for F6YGF8 as seed ortholog is 41%.
Alternative seed ortholog is F6PLY6 (4 bits away from this cluster)
Bootstrap support for G3JQ42 as seed ortholog is 68%.
Alternative seed ortholog is G3JG83 (14 bits away from this cluster)

Group of orthologs #1571. Best score 103 bits
Score difference with first non-orthologous sequence - C.intestinalis:103 C.militaris:34

H2XRI7              	100.00%		G3JKV5              	100.00%
Bootstrap support for H2XRI7 as seed ortholog is 100%.
Bootstrap support for G3JKV5 as seed ortholog is 85%.

Group of orthologs #1572. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:102

F6TJY9              	100.00%		G3J7N0              	100.00%
Bootstrap support for F6TJY9 as seed ortholog is 100%.
Bootstrap support for G3J7N0 as seed ortholog is 100%.

Group of orthologs #1573. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:102

F6XJ18              	100.00%		G3JBQ7              	100.00%
Bootstrap support for F6XJ18 as seed ortholog is 100%.
Bootstrap support for G3JBQ7 as seed ortholog is 100%.

Group of orthologs #1574. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:102

F7AX45              	100.00%		G3J3W5              	100.00%
Bootstrap support for F7AX45 as seed ortholog is 100%.
Bootstrap support for G3J3W5 as seed ortholog is 100%.

Group of orthologs #1575. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:102

F6Y7F7              	100.00%		G3JCT2              	100.00%
Bootstrap support for F6Y7F7 as seed ortholog is 100%.
Bootstrap support for G3JCT2 as seed ortholog is 100%.

Group of orthologs #1576. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:19 C.militaris:102

F6ZFE0              	100.00%		G3JHD0              	100.00%
Bootstrap support for F6ZFE0 as seed ortholog is 66%.
Alternative seed ortholog is F7A4D7 (19 bits away from this cluster)
Bootstrap support for G3JHD0 as seed ortholog is 100%.

Group of orthologs #1577. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:48

F7BME9              	100.00%		G3JE85              	100.00%
Bootstrap support for F7BME9 as seed ortholog is 100%.
Bootstrap support for G3JE85 as seed ortholog is 97%.

Group of orthologs #1578. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:37

H2XX96              	100.00%		G3JI18              	100.00%
Bootstrap support for H2XX96 as seed ortholog is 100%.
Bootstrap support for G3JI18 as seed ortholog is 86%.

Group of orthologs #1579. Best score 102 bits
Score difference with first non-orthologous sequence - C.intestinalis:102 C.militaris:102

H2Y013              	100.00%		G3JL84              	100.00%
Bootstrap support for H2Y013 as seed ortholog is 100%.
Bootstrap support for G3JL84 as seed ortholog is 100%.

Group of orthologs #1580. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:23 C.militaris:101

F6TAS2              	100.00%		G3JGC5              	100.00%
                    	       		G3JI39              	5.40%
Bootstrap support for F6TAS2 as seed ortholog is 76%.
Bootstrap support for G3JGC5 as seed ortholog is 100%.

Group of orthologs #1581. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 C.militaris:9

F6XQ02              	100.00%		G3J9Y8              	100.00%
Bootstrap support for F6XQ02 as seed ortholog is 100%.
Bootstrap support for G3J9Y8 as seed ortholog is 54%.
Alternative seed ortholog is G3JCI6 (9 bits away from this cluster)

Group of orthologs #1582. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.militaris:101

F6ZF76              	100.00%		G3J8E8              	100.00%
Bootstrap support for F6ZF76 as seed ortholog is 99%.
Bootstrap support for G3J8E8 as seed ortholog is 100%.

Group of orthologs #1583. Best score 101 bits
Score difference with first non-orthologous sequence - C.intestinalis:101 C.militaris:101

F6X5Q9              	100.00%		G3JH81              	100.00%
Bootstrap support for F6X5Q9 as seed ortholog is 100%.
Bootstrap support for G3JH81 as seed ortholog is 100%.

Group of orthologs #1584. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

F7AXQ6              	100.00%		G3J9N7              	100.00%
F6R5Y6              	8.31%		G3J4C4              	40.62%
                    	       		G3JIN2              	37.00%
                    	       		G3JQ70              	32.86%
                    	       		G3JBU2              	25.49%
                    	       		G3JFN9              	18.50%
Bootstrap support for F7AXQ6 as seed ortholog is 100%.
Bootstrap support for G3J9N7 as seed ortholog is 100%.

Group of orthologs #1585. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

F6VN69              	100.00%		G3J435              	100.00%
H2XR96              	36.18%		G3JT69              	45.61%
H2XMT1              	31.22%		G3J4W7              	14.36%
Bootstrap support for F6VN69 as seed ortholog is 100%.
Bootstrap support for G3J435 as seed ortholog is 100%.

Group of orthologs #1586. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

F6SV73              	100.00%		G3J4G3              	100.00%
Bootstrap support for F6SV73 as seed ortholog is 100%.
Bootstrap support for G3J4G3 as seed ortholog is 100%.

Group of orthologs #1587. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:9 C.militaris:100

F6W3V6              	100.00%		G3J7C0              	100.00%
Bootstrap support for F6W3V6 as seed ortholog is 90%.
Bootstrap support for G3J7C0 as seed ortholog is 100%.

Group of orthologs #1588. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

F6W2W3              	100.00%		G3J8D9              	100.00%
Bootstrap support for F6W2W3 as seed ortholog is 100%.
Bootstrap support for G3J8D9 as seed ortholog is 100%.

Group of orthologs #1589. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

F6YAZ4              	100.00%		G3J3S6              	100.00%
Bootstrap support for F6YAZ4 as seed ortholog is 100%.
Bootstrap support for G3J3S6 as seed ortholog is 100%.

Group of orthologs #1590. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

H2XTQ3              	100.00%		G3J647              	100.00%
Bootstrap support for H2XTQ3 as seed ortholog is 100%.
Bootstrap support for G3J647 as seed ortholog is 100%.

Group of orthologs #1591. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

H2XU65              	100.00%		G3JAR0              	100.00%
Bootstrap support for H2XU65 as seed ortholog is 100%.
Bootstrap support for G3JAR0 as seed ortholog is 100%.

Group of orthologs #1592. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:100

H2XNY7              	100.00%		G3JHR3              	100.00%
Bootstrap support for H2XNY7 as seed ortholog is 100%.
Bootstrap support for G3JHR3 as seed ortholog is 100%.

Group of orthologs #1593. Best score 100 bits
Score difference with first non-orthologous sequence - C.intestinalis:100 C.militaris:50

H2XSA5              	100.00%		G3JHZ7              	100.00%
Bootstrap support for H2XSA5 as seed ortholog is 100%.
Bootstrap support for G3JHZ7 as seed ortholog is 99%.

Group of orthologs #1594. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:99

F6QQ49              	100.00%		G3J3V6              	100.00%
Bootstrap support for F6QQ49 as seed ortholog is 100%.
Bootstrap support for G3J3V6 as seed ortholog is 100%.

Group of orthologs #1595. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:99

F6WHI9              	100.00%		G3JDU6              	100.00%
Bootstrap support for F6WHI9 as seed ortholog is 100%.
Bootstrap support for G3JDU6 as seed ortholog is 100%.

Group of orthologs #1596. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 C.militaris:99

F6Z6E4              	100.00%		G3J9Z8              	100.00%
Bootstrap support for F6Z6E4 as seed ortholog is 90%.
Bootstrap support for G3J9Z8 as seed ortholog is 100%.

Group of orthologs #1597. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:99

F6YAY9              	100.00%		G3JKM2              	100.00%
Bootstrap support for F6YAY9 as seed ortholog is 100%.
Bootstrap support for G3JKM2 as seed ortholog is 100%.

Group of orthologs #1598. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:24 C.militaris:46

F6YVE9              	100.00%		G3JN50              	100.00%
Bootstrap support for F6YVE9 as seed ortholog is 86%.
Bootstrap support for G3JN50 as seed ortholog is 97%.

Group of orthologs #1599. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:99

F6ZA03              	100.00%		G3JN34              	100.00%
Bootstrap support for F6ZA03 as seed ortholog is 100%.
Bootstrap support for G3JN34 as seed ortholog is 100%.

Group of orthologs #1600. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:99

H2XJN8              	100.00%		G3JM30              	100.00%
Bootstrap support for H2XJN8 as seed ortholog is 100%.
Bootstrap support for G3JM30 as seed ortholog is 100%.

Group of orthologs #1601. Best score 99 bits
Score difference with first non-orthologous sequence - C.intestinalis:99 C.militaris:99

H2XY20              	100.00%		G3JU77              	100.00%
Bootstrap support for H2XY20 as seed ortholog is 100%.
Bootstrap support for G3JU77 as seed ortholog is 100%.

Group of orthologs #1602. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

F6X139              	100.00%		G3JDV8              	100.00%
F6X7G6              	22.62%		G3JDV2              	40.82%
Bootstrap support for F6X139 as seed ortholog is 100%.
Bootstrap support for G3JDV8 as seed ortholog is 100%.

Group of orthologs #1603. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

F6RQ34              	100.00%		G3J3U4              	100.00%
Bootstrap support for F6RQ34 as seed ortholog is 100%.
Bootstrap support for G3J3U4 as seed ortholog is 100%.

Group of orthologs #1604. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

F6SVM4              	100.00%		G3J462              	100.00%
Bootstrap support for F6SVM4 as seed ortholog is 100%.
Bootstrap support for G3J462 as seed ortholog is 100%.

Group of orthologs #1605. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

F6SST4              	100.00%		G3JGC7              	100.00%
Bootstrap support for F6SST4 as seed ortholog is 100%.
Bootstrap support for G3JGC7 as seed ortholog is 100%.

Group of orthologs #1606. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

F6VN74              	100.00%		G3JJH1              	100.00%
Bootstrap support for F6VN74 as seed ortholog is 100%.
Bootstrap support for G3JJH1 as seed ortholog is 100%.

Group of orthologs #1607. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:35

H2XVX4              	100.00%		G3J564              	100.00%
Bootstrap support for H2XVX4 as seed ortholog is 100%.
Bootstrap support for G3J564 as seed ortholog is 89%.

Group of orthologs #1608. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

H2XYD5              	100.00%		G3J8H5              	100.00%
Bootstrap support for H2XYD5 as seed ortholog is 100%.
Bootstrap support for G3J8H5 as seed ortholog is 100%.

Group of orthologs #1609. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

H2XR58              	100.00%		G3JPU4              	100.00%
Bootstrap support for H2XR58 as seed ortholog is 100%.
Bootstrap support for G3JPU4 as seed ortholog is 100%.

Group of orthologs #1610. Best score 98 bits
Score difference with first non-orthologous sequence - C.intestinalis:98 C.militaris:98

H2XRE1              	100.00%		G3JU05              	100.00%
Bootstrap support for H2XRE1 as seed ortholog is 100%.
Bootstrap support for G3JU05 as seed ortholog is 100%.

Group of orthologs #1611. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:28

F6XYT3              	100.00%		G3JT43              	100.00%
F6YP51              	42.08%		G3JNU1              	20.24%
F6XYD9              	39.85%		G3JTT8              	19.48%
F7AQC2              	23.17%		G3JQI2              	19.14%
H2Y1L4              	22.71%		G3JB57              	18.13%
F7A6E1              	22.71%		G3JSF1              	17.20%
                    	       		G3JF77              	16.86%
                    	       		G3JSV1              	16.61%
                    	       		G3J9C3              	16.36%
                    	       		G3JRL9              	16.19%
                    	       		G3JC39              	16.10%
                    	       		G3J5S4              	15.01%
                    	       		G3JNI4              	14.92%
                    	       		G3JL74              	14.08%
                    	       		G3JKR8              	13.07%
                    	       		G3JPI9              	11.38%
                    	       		G3JLB7              	11.21%
Bootstrap support for F6XYT3 as seed ortholog is 100%.
Bootstrap support for G3JT43 as seed ortholog is 75%.

Group of orthologs #1612. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:5 C.militaris:97

Q5SE06              	100.00%		G3JGG2              	100.00%
F6VL03              	28.57%		
F6YSJ3              	23.09%		
F6S1J5              	20.74%		
F6XRM9              	12.33%		
Bootstrap support for Q5SE06 as seed ortholog is 53%.
Alternative seed ortholog is F6S6I4 (5 bits away from this cluster)
Bootstrap support for G3JGG2 as seed ortholog is 100%.

Group of orthologs #1613. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:18 C.militaris:6

F6R8N5              	100.00%		G3JBX4              	100.00%
F6YX18              	11.99%		G3JK93              	46.52%
Bootstrap support for F6R8N5 as seed ortholog is 61%.
Alternative seed ortholog is F6UPT3 (18 bits away from this cluster)
Bootstrap support for G3JBX4 as seed ortholog is 43%.
Alternative seed ortholog is G3JCT3 (6 bits away from this cluster)

Group of orthologs #1614. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6W067              	100.00%		G3JCN0              	100.00%
F7B059              	38.06%		
Bootstrap support for F6W067 as seed ortholog is 100%.
Bootstrap support for G3JCN0 as seed ortholog is 100%.

Group of orthologs #1615. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:54

H2XZV1              	100.00%		G3JKQ7              	100.00%
                    	       		G3JS19              	26.94%
Bootstrap support for H2XZV1 as seed ortholog is 100%.
Bootstrap support for G3JKQ7 as seed ortholog is 95%.

Group of orthologs #1616. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6V1A9              	100.00%		G3J3W4              	100.00%
Bootstrap support for F6V1A9 as seed ortholog is 100%.
Bootstrap support for G3J3W4 as seed ortholog is 100%.

Group of orthologs #1617. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6RZU6              	100.00%		G3JBD5              	100.00%
Bootstrap support for F6RZU6 as seed ortholog is 100%.
Bootstrap support for G3JBD5 as seed ortholog is 100%.

Group of orthologs #1618. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6TV26              	100.00%		G3JBV4              	100.00%
Bootstrap support for F6TV26 as seed ortholog is 100%.
Bootstrap support for G3JBV4 as seed ortholog is 100%.

Group of orthologs #1619. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6PHN1              	100.00%		G3JL41              	100.00%
Bootstrap support for F6PHN1 as seed ortholog is 100%.
Bootstrap support for G3JL41 as seed ortholog is 100%.

Group of orthologs #1620. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6S9I2              	100.00%		G3JKQ8              	100.00%
Bootstrap support for F6S9I2 as seed ortholog is 100%.
Bootstrap support for G3JKQ8 as seed ortholog is 100%.

Group of orthologs #1621. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F6Y886              	100.00%		G3JEY9              	100.00%
Bootstrap support for F6Y886 as seed ortholog is 100%.
Bootstrap support for G3JEY9 as seed ortholog is 100%.

Group of orthologs #1622. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

F7BHR3              	100.00%		G3JJ98              	100.00%
Bootstrap support for F7BHR3 as seed ortholog is 100%.
Bootstrap support for G3JJ98 as seed ortholog is 100%.

Group of orthologs #1623. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

H2Y2U8              	100.00%		G3J3B8              	100.00%
Bootstrap support for H2Y2U8 as seed ortholog is 100%.
Bootstrap support for G3J3B8 as seed ortholog is 100%.

Group of orthologs #1624. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

H2XZI3              	100.00%		G3JFX7              	100.00%
Bootstrap support for H2XZI3 as seed ortholog is 100%.
Bootstrap support for G3JFX7 as seed ortholog is 100%.

Group of orthologs #1625. Best score 97 bits
Score difference with first non-orthologous sequence - C.intestinalis:97 C.militaris:97

H2XXI7              	100.00%		G3JN45              	100.00%
Bootstrap support for H2XXI7 as seed ortholog is 100%.
Bootstrap support for G3JN45 as seed ortholog is 100%.

Group of orthologs #1626. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:1

F6XBY1              	100.00%		G3J2V3              	100.00%
F7A8X9              	10.63%		
Bootstrap support for F6XBY1 as seed ortholog is 100%.
Bootstrap support for G3J2V3 as seed ortholog is 50%.
Alternative seed ortholog is G3JMJ1 (1 bits away from this cluster)

Group of orthologs #1627. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

H2XNW6              	100.00%		G3J7I8              	100.00%
H2XLB1              	36.54%		
Bootstrap support for H2XNW6 as seed ortholog is 100%.
Bootstrap support for G3J7I8 as seed ortholog is 100%.

Group of orthologs #1628. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

F6RGQ1              	100.00%		G3J5J9              	100.00%
Bootstrap support for F6RGQ1 as seed ortholog is 100%.
Bootstrap support for G3J5J9 as seed ortholog is 100%.

Group of orthologs #1629. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

F6Y504              	100.00%		G3J410              	100.00%
Bootstrap support for F6Y504 as seed ortholog is 100%.
Bootstrap support for G3J410 as seed ortholog is 100%.

Group of orthologs #1630. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:4 C.militaris:42

F6Y3J4              	100.00%		G3J7E6              	100.00%
Bootstrap support for F6Y3J4 as seed ortholog is 45%.
Alternative seed ortholog is F7AXY8 (4 bits away from this cluster)
Bootstrap support for G3J7E6 as seed ortholog is 94%.

Group of orthologs #1631. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

F6QDJ6              	100.00%		G3JSC0              	100.00%
Bootstrap support for F6QDJ6 as seed ortholog is 100%.
Bootstrap support for G3JSC0 as seed ortholog is 100%.

Group of orthologs #1632. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

F6WNH2              	100.00%		G3JEF5              	100.00%
Bootstrap support for F6WNH2 as seed ortholog is 100%.
Bootstrap support for G3JEF5 as seed ortholog is 100%.

Group of orthologs #1633. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

F7ASX2              	100.00%		G3J7W6              	100.00%
Bootstrap support for F7ASX2 as seed ortholog is 100%.
Bootstrap support for G3J7W6 as seed ortholog is 100%.

Group of orthologs #1634. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

H2XKA1              	100.00%		G3JAL0              	100.00%
Bootstrap support for H2XKA1 as seed ortholog is 100%.
Bootstrap support for G3JAL0 as seed ortholog is 100%.

Group of orthologs #1635. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:96 C.militaris:96

F6Y1Z7              	100.00%		G3JS73              	100.00%
Bootstrap support for F6Y1Z7 as seed ortholog is 100%.
Bootstrap support for G3JS73 as seed ortholog is 100%.

Group of orthologs #1636. Best score 96 bits
Score difference with first non-orthologous sequence - C.intestinalis:26 C.militaris:96

H2XT36              	100.00%		G3JT28              	100.00%
Bootstrap support for H2XT36 as seed ortholog is 90%.
Bootstrap support for G3JT28 as seed ortholog is 100%.

Group of orthologs #1637. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:37

H2Y260              	100.00%		G3J5M4              	100.00%
F6R6Q8              	46.91%		
H2Y1C2              	43.03%		
L7N0R2              	34.04%		
F6UAX0              	33.16%		
H2XX05              	31.57%		
Q1RL43              	27.69%		
Q1RL67              	20.81%		
F6SXL4              	7.58%		
F6VWP3              	6.35%		
F6UXM4              	5.29%		
Bootstrap support for H2Y260 as seed ortholog is 100%.
Bootstrap support for G3J5M4 as seed ortholog is 81%.

Group of orthologs #1638. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:16 C.militaris:95

F6YLR6              	100.00%		G3JST1              	100.00%
                    	       		G3JHM2              	21.09%
Bootstrap support for F6YLR6 as seed ortholog is 72%.
Alternative seed ortholog is F6W9F7 (16 bits away from this cluster)
Bootstrap support for G3JST1 as seed ortholog is 100%.

Group of orthologs #1639. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:95

H2XTC9              	100.00%		G3JN32              	100.00%
Bootstrap support for H2XTC9 as seed ortholog is 100%.
Bootstrap support for G3JN32 as seed ortholog is 100%.

Group of orthologs #1640. Best score 95 bits
Score difference with first non-orthologous sequence - C.intestinalis:95 C.militaris:95

H2Y2A0              	100.00%		G3JL87              	100.00%
Bootstrap support for H2Y2A0 as seed ortholog is 100%.
Bootstrap support for G3JL87 as seed ortholog is 100%.

Group of orthologs #1641. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

F6UF11              	100.00%		G3J7R1              	100.00%
F6Z2G5              	13.61%		G3JMY2              	12.89%
Bootstrap support for F6UF11 as seed ortholog is 100%.
Bootstrap support for G3J7R1 as seed ortholog is 100%.

Group of orthologs #1642. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:41 C.militaris:14

F6QEE3              	100.00%		G3J6A8              	100.00%
Bootstrap support for F6QEE3 as seed ortholog is 90%.
Bootstrap support for G3J6A8 as seed ortholog is 66%.
Alternative seed ortholog is G3JBP8 (14 bits away from this cluster)

Group of orthologs #1643. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

F6TVN3              	100.00%		G3J7W8              	100.00%
Bootstrap support for F6TVN3 as seed ortholog is 100%.
Bootstrap support for G3J7W8 as seed ortholog is 100%.

Group of orthologs #1644. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

F6QFA2              	100.00%		G3JSG3              	100.00%
Bootstrap support for F6QFA2 as seed ortholog is 100%.
Bootstrap support for G3JSG3 as seed ortholog is 100%.

Group of orthologs #1645. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

F6W6Z3              	100.00%		G3JJ68              	100.00%
Bootstrap support for F6W6Z3 as seed ortholog is 100%.
Bootstrap support for G3JJ68 as seed ortholog is 100%.

Group of orthologs #1646. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

F6ZRA2              	100.00%		G3JIJ8              	100.00%
Bootstrap support for F6ZRA2 as seed ortholog is 100%.
Bootstrap support for G3JIJ8 as seed ortholog is 100%.

Group of orthologs #1647. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

F7BD80              	100.00%		G3JE92              	100.00%
Bootstrap support for F7BD80 as seed ortholog is 100%.
Bootstrap support for G3JE92 as seed ortholog is 100%.

Group of orthologs #1648. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

H2Y3F6              	100.00%		G3J6S5              	100.00%
Bootstrap support for H2Y3F6 as seed ortholog is 100%.
Bootstrap support for G3J6S5 as seed ortholog is 100%.

Group of orthologs #1649. Best score 94 bits
Score difference with first non-orthologous sequence - C.intestinalis:94 C.militaris:94

H2XVP1              	100.00%		G3JGA0              	100.00%
Bootstrap support for H2XVP1 as seed ortholog is 100%.
Bootstrap support for G3JGA0 as seed ortholog is 100%.

Group of orthologs #1650. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:5 C.militaris:93

F6Q539              	100.00%		G3J5S7              	100.00%
Bootstrap support for F6Q539 as seed ortholog is 55%.
Alternative seed ortholog is F6YIB7 (5 bits away from this cluster)
Bootstrap support for G3J5S7 as seed ortholog is 100%.

Group of orthologs #1651. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:12 C.militaris:93

F6RZE8              	100.00%		G3JAG7              	100.00%
Bootstrap support for F6RZE8 as seed ortholog is 74%.
Alternative seed ortholog is F6ZAE1 (12 bits away from this cluster)
Bootstrap support for G3JAG7 as seed ortholog is 100%.

Group of orthologs #1652. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 C.militaris:49

F6QZF6              	100.00%		G3JDB8              	100.00%
Bootstrap support for F6QZF6 as seed ortholog is 100%.
Bootstrap support for G3JDB8 as seed ortholog is 88%.

Group of orthologs #1653. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 C.militaris:93

F7ASB0              	100.00%		G3J401              	100.00%
Bootstrap support for F7ASB0 as seed ortholog is 100%.
Bootstrap support for G3J401 as seed ortholog is 100%.

Group of orthologs #1654. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 C.militaris:24

F6VQX3              	100.00%		G3JLE6              	100.00%
Bootstrap support for F6VQX3 as seed ortholog is 100%.
Bootstrap support for G3JLE6 as seed ortholog is 65%.
Alternative seed ortholog is G3JCZ8 (24 bits away from this cluster)

Group of orthologs #1655. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 C.militaris:93

F6ZIQ8              	100.00%		G3JDP8              	100.00%
Bootstrap support for F6ZIQ8 as seed ortholog is 100%.
Bootstrap support for G3JDP8 as seed ortholog is 100%.

Group of orthologs #1656. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 C.militaris:93

H2XM98              	100.00%		G3J9D8              	100.00%
Bootstrap support for H2XM98 as seed ortholog is 100%.
Bootstrap support for G3J9D8 as seed ortholog is 100%.

Group of orthologs #1657. Best score 93 bits
Score difference with first non-orthologous sequence - C.intestinalis:93 C.militaris:20

F7ANZ8              	100.00%		G3JUX3              	100.00%
Bootstrap support for F7ANZ8 as seed ortholog is 100%.
Bootstrap support for G3JUX3 as seed ortholog is 32%.
Alternative seed ortholog is G3JMA9 (20 bits away from this cluster)

Group of orthologs #1658. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F6QQM7              	100.00%		G3JUG6              	100.00%
F6XH20              	40.58%		G3J329              	40.06%
                    	       		G3JPQ5              	36.30%
Bootstrap support for F6QQM7 as seed ortholog is 100%.
Bootstrap support for G3JUG6 as seed ortholog is 100%.

Group of orthologs #1659. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

H2XLJ5              	100.00%		G3J9B0              	100.00%
                    	       		G3J5E2              	12.58%
                    	       		G3JA27              	12.17%
                    	       		G3J4Y2              	8.14%
Bootstrap support for H2XLJ5 as seed ortholog is 100%.
Bootstrap support for G3J9B0 as seed ortholog is 100%.

Group of orthologs #1660. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F6QDX7              	100.00%		G3J3W0              	100.00%
Bootstrap support for F6QDX7 as seed ortholog is 100%.
Bootstrap support for G3J3W0 as seed ortholog is 100%.

Group of orthologs #1661. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F6RXS5              	100.00%		G3JDA0              	100.00%
Bootstrap support for F6RXS5 as seed ortholog is 100%.
Bootstrap support for G3JDA0 as seed ortholog is 100%.

Group of orthologs #1662. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F6WCB0              	100.00%		G3J466              	100.00%
Bootstrap support for F6WCB0 as seed ortholog is 100%.
Bootstrap support for G3J466 as seed ortholog is 100%.

Group of orthologs #1663. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:38 C.militaris:92

F6Z010              	100.00%		G3J9E4              	100.00%
Bootstrap support for F6Z010 as seed ortholog is 86%.
Bootstrap support for G3J9E4 as seed ortholog is 100%.

Group of orthologs #1664. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F6RJZ1              	100.00%		G3JRE9              	100.00%
Bootstrap support for F6RJZ1 as seed ortholog is 100%.
Bootstrap support for G3JRE9 as seed ortholog is 100%.

Group of orthologs #1665. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F6UGF1              	100.00%		G3JL97              	100.00%
Bootstrap support for F6UGF1 as seed ortholog is 100%.
Bootstrap support for G3JL97 as seed ortholog is 100%.

Group of orthologs #1666. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

H2XLH0              	100.00%		G3JAN8              	100.00%
Bootstrap support for H2XLH0 as seed ortholog is 100%.
Bootstrap support for G3JAN8 as seed ortholog is 100%.

Group of orthologs #1667. Best score 92 bits
Score difference with first non-orthologous sequence - C.intestinalis:92 C.militaris:92

F7BFG7              	100.00%		G3JFU4              	100.00%
Bootstrap support for F7BFG7 as seed ortholog is 100%.
Bootstrap support for G3JFU4 as seed ortholog is 100%.

Group of orthologs #1668. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:24

F6XX66              	100.00%		G3JA98              	100.00%
Bootstrap support for F6XX66 as seed ortholog is 100%.
Bootstrap support for G3JA98 as seed ortholog is 77%.

Group of orthologs #1669. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

F6VA08              	100.00%		G3JLJ1              	100.00%
Bootstrap support for F6VA08 as seed ortholog is 100%.
Bootstrap support for G3JLJ1 as seed ortholog is 100%.

Group of orthologs #1670. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

F6WCD3              	100.00%		G3JKU5              	100.00%
Bootstrap support for F6WCD3 as seed ortholog is 100%.
Bootstrap support for G3JKU5 as seed ortholog is 100%.

Group of orthologs #1671. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

F6TPM4              	100.00%		G3JV10              	100.00%
Bootstrap support for F6TPM4 as seed ortholog is 100%.
Bootstrap support for G3JV10 as seed ortholog is 100%.

Group of orthologs #1672. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

F6WGY1              	100.00%		G3JP97              	100.00%
Bootstrap support for F6WGY1 as seed ortholog is 100%.
Bootstrap support for G3JP97 as seed ortholog is 100%.

Group of orthologs #1673. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

F6ZFY8              	100.00%		G3JKJ1              	100.00%
Bootstrap support for F6ZFY8 as seed ortholog is 100%.
Bootstrap support for G3JKJ1 as seed ortholog is 100%.

Group of orthologs #1674. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

H2XVR3              	100.00%		G3J3L2              	100.00%
Bootstrap support for H2XVR3 as seed ortholog is 100%.
Bootstrap support for G3J3L2 as seed ortholog is 100%.

Group of orthologs #1675. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

H2XJQ7              	100.00%		G3JHB5              	100.00%
Bootstrap support for H2XJQ7 as seed ortholog is 100%.
Bootstrap support for G3JHB5 as seed ortholog is 100%.

Group of orthologs #1676. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

H2XX49              	100.00%		G3JJE9              	100.00%
Bootstrap support for H2XX49 as seed ortholog is 100%.
Bootstrap support for G3JJE9 as seed ortholog is 100%.

Group of orthologs #1677. Best score 91 bits
Score difference with first non-orthologous sequence - C.intestinalis:91 C.militaris:91

H2XS91              	100.00%		G3JTM4              	100.00%
Bootstrap support for H2XS91 as seed ortholog is 100%.
Bootstrap support for G3JTM4 as seed ortholog is 100%.

Group of orthologs #1678. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:90

F6ZCN2              	100.00%		G3JUY2              	100.00%
H2XWF3              	44.59%		G3J3J0              	37.16%
H2XV23              	6.07%		G3JT59              	30.14%
F6T0V1              	5.48%		G3JTX3              	22.86%
H2XVY9              	5.33%		G3JKR6              	16.60%
                    	       		G3JSY9              	16.60%
Bootstrap support for F6ZCN2 as seed ortholog is 100%.
Bootstrap support for G3JUY2 as seed ortholog is 100%.

Group of orthologs #1679. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:90

F6XSK1              	100.00%		G3JA95              	100.00%
F7AZ18              	10.49%		
Bootstrap support for F6XSK1 as seed ortholog is 100%.
Bootstrap support for G3JA95 as seed ortholog is 100%.

Group of orthologs #1680. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:90

F6V304              	100.00%		G3JPI5              	100.00%
F6YWK0              	10.11%		
Bootstrap support for F6V304 as seed ortholog is 100%.
Bootstrap support for G3JPI5 as seed ortholog is 100%.

Group of orthologs #1681. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:90

F6WJV4              	100.00%		G3J5X7              	100.00%
Bootstrap support for F6WJV4 as seed ortholog is 100%.
Bootstrap support for G3J5X7 as seed ortholog is 100%.

Group of orthologs #1682. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:90

F6ZCF4              	100.00%		G3J9A0              	100.00%
Bootstrap support for F6ZCF4 as seed ortholog is 100%.
Bootstrap support for G3J9A0 as seed ortholog is 100%.

Group of orthologs #1683. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:18 C.militaris:90

F6WS92              	100.00%		G3JM45              	100.00%
Bootstrap support for F6WS92 as seed ortholog is 72%.
Alternative seed ortholog is H2XYR7 (18 bits away from this cluster)
Bootstrap support for G3JM45 as seed ortholog is 100%.

Group of orthologs #1684. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:90 C.militaris:90

F7BJ17              	100.00%		G3JR06              	100.00%
Bootstrap support for F7BJ17 as seed ortholog is 100%.
Bootstrap support for G3JR06 as seed ortholog is 100%.

Group of orthologs #1685. Best score 90 bits
Score difference with first non-orthologous sequence - C.intestinalis:29 C.militaris:90

H2XZ67              	100.00%		G3JL90              	100.00%
Bootstrap support for H2XZ67 as seed ortholog is 85%.
Bootstrap support for G3JL90 as seed ortholog is 100%.

Group of orthologs #1686. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F6RBS2              	100.00%		G3J6U2              	100.00%
F7B763              	19.87%		
F7B757              	16.28%		
H2XS49              	14.59%		
H2XVH5              	13.11%		
H2XNZ2              	12.90%		
H2XKR4              	10.78%		
H2Y1L1              	10.57%		
H2XQ96              	8.88%		
Bootstrap support for F6RBS2 as seed ortholog is 100%.
Bootstrap support for G3J6U2 as seed ortholog is 100%.

Group of orthologs #1687. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:7 C.militaris:89

F6TX66              	100.00%		G3JLP3              	100.00%
F6TX70              	69.42%		
Bootstrap support for F6TX66 as seed ortholog is 56%.
Alternative seed ortholog is F7BGY2 (7 bits away from this cluster)
Bootstrap support for G3JLP3 as seed ortholog is 100%.

Group of orthologs #1688. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F6WCS0              	100.00%		G3JDJ3              	100.00%
Bootstrap support for F6WCS0 as seed ortholog is 100%.
Bootstrap support for G3JDJ3 as seed ortholog is 100%.

Group of orthologs #1689. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F7APY2              	100.00%		G3J4B2              	100.00%
Bootstrap support for F7APY2 as seed ortholog is 100%.
Bootstrap support for G3J4B2 as seed ortholog is 100%.

Group of orthologs #1690. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F6WWH2              	100.00%		G3JE74              	100.00%
Bootstrap support for F6WWH2 as seed ortholog is 100%.
Bootstrap support for G3JE74 as seed ortholog is 100%.

Group of orthologs #1691. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F6UE58              	100.00%		G3JPX5              	100.00%
Bootstrap support for F6UE58 as seed ortholog is 100%.
Bootstrap support for G3JPX5 as seed ortholog is 100%.

Group of orthologs #1692. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F7AD34              	100.00%		G3JBV5              	100.00%
Bootstrap support for F7AD34 as seed ortholog is 100%.
Bootstrap support for G3JBV5 as seed ortholog is 100%.

Group of orthologs #1693. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:2 C.militaris:89

F7AA36              	100.00%		G3JKA6              	100.00%
Bootstrap support for F7AA36 as seed ortholog is 47%.
Alternative seed ortholog is F7B6U2 (2 bits away from this cluster)
Bootstrap support for G3JKA6 as seed ortholog is 100%.

Group of orthologs #1694. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

F6YFV6              	100.00%		G3JUA1              	100.00%
Bootstrap support for F6YFV6 as seed ortholog is 100%.
Bootstrap support for G3JUA1 as seed ortholog is 100%.

Group of orthologs #1695. Best score 89 bits
Score difference with first non-orthologous sequence - C.intestinalis:89 C.militaris:89

H2XNC6              	100.00%		G3JJ34              	100.00%
Bootstrap support for H2XNC6 as seed ortholog is 100%.
Bootstrap support for G3JJ34 as seed ortholog is 100%.

Group of orthologs #1696. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:33

F6Z1X1              	100.00%		G3JJQ1              	100.00%
F6Z1X8              	49.01%		
F7BHU7              	25.86%		
Bootstrap support for F6Z1X1 as seed ortholog is 100%.
Bootstrap support for G3JJQ1 as seed ortholog is 76%.

Group of orthologs #1697. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F6UA18              	100.00%		G3JD58              	100.00%
Bootstrap support for F6UA18 as seed ortholog is 100%.
Bootstrap support for G3JD58 as seed ortholog is 100%.

Group of orthologs #1698. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F6ZXB2              	100.00%		G3JB25              	100.00%
Bootstrap support for F6ZXB2 as seed ortholog is 100%.
Bootstrap support for G3JB25 as seed ortholog is 100%.

Group of orthologs #1699. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F6XIG6              	100.00%		G3JL88              	100.00%
Bootstrap support for F6XIG6 as seed ortholog is 100%.
Bootstrap support for G3JL88 as seed ortholog is 100%.

Group of orthologs #1700. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F6WFW0              	100.00%		G3JQY8              	100.00%
Bootstrap support for F6WFW0 as seed ortholog is 100%.
Bootstrap support for G3JQY8 as seed ortholog is 100%.

Group of orthologs #1701. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F6YPB3              	100.00%		G3JSA5              	100.00%
Bootstrap support for F6YPB3 as seed ortholog is 100%.
Bootstrap support for G3JSA5 as seed ortholog is 100%.

Group of orthologs #1702. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F7ANQ7              	100.00%		G3JRF2              	100.00%
Bootstrap support for F7ANQ7 as seed ortholog is 100%.
Bootstrap support for G3JRF2 as seed ortholog is 100%.

Group of orthologs #1703. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

H2XNL6              	100.00%		G3JKL9              	100.00%
Bootstrap support for H2XNL6 as seed ortholog is 100%.
Bootstrap support for G3JKL9 as seed ortholog is 100%.

Group of orthologs #1704. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

F7AUH4              	100.00%		G3JSZ2              	100.00%
Bootstrap support for F7AUH4 as seed ortholog is 100%.
Bootstrap support for G3JSZ2 as seed ortholog is 100%.

Group of orthologs #1705. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:25 C.militaris:88

H2XLZ2              	100.00%		G3JQ75              	100.00%
Bootstrap support for H2XLZ2 as seed ortholog is 87%.
Bootstrap support for G3JQ75 as seed ortholog is 100%.

Group of orthologs #1706. Best score 88 bits
Score difference with first non-orthologous sequence - C.intestinalis:88 C.militaris:88

H2XWE7              	100.00%		G3JLI8              	100.00%
Bootstrap support for H2XWE7 as seed ortholog is 100%.
Bootstrap support for G3JLI8 as seed ortholog is 100%.

Group of orthologs #1707. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

F6UG66              	100.00%		G3J9K7              	100.00%
Bootstrap support for F6UG66 as seed ortholog is 100%.
Bootstrap support for G3J9K7 as seed ortholog is 100%.

Group of orthologs #1708. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

F6VCG5              	100.00%		G3JDE5              	100.00%
Bootstrap support for F6VCG5 as seed ortholog is 100%.
Bootstrap support for G3JDE5 as seed ortholog is 100%.

Group of orthologs #1709. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

F7BBF0              	100.00%		G3J780              	100.00%
Bootstrap support for F7BBF0 as seed ortholog is 100%.
Bootstrap support for G3J780 as seed ortholog is 100%.

Group of orthologs #1710. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

H2XNI9              	100.00%		G3J3Y6              	100.00%
Bootstrap support for H2XNI9 as seed ortholog is 100%.
Bootstrap support for G3J3Y6 as seed ortholog is 100%.

Group of orthologs #1711. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

F6VGI1              	100.00%		G3JQE5              	100.00%
Bootstrap support for F6VGI1 as seed ortholog is 100%.
Bootstrap support for G3JQE5 as seed ortholog is 100%.

Group of orthologs #1712. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

F7AE51              	100.00%		G3JID7              	100.00%
Bootstrap support for F7AE51 as seed ortholog is 100%.
Bootstrap support for G3JID7 as seed ortholog is 100%.

Group of orthologs #1713. Best score 87 bits
Score difference with first non-orthologous sequence - C.intestinalis:87 C.militaris:87

H2XRS4              	100.00%		G3JH51              	100.00%
Bootstrap support for H2XRS4 as seed ortholog is 100%.
Bootstrap support for G3JH51 as seed ortholog is 100%.

Group of orthologs #1714. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

H2XZX8              	100.00%		G3JR45              	100.00%
Q1RLF1              	41.20%		
F6W0H5              	34.39%		
F6RSE2              	19.18%		
H2XKK9              	16.64%		
F6WPJ4              	15.69%		
Q1RLE9              	15.53%		
F6TCA9              	14.26%		
Q1RL62              	14.10%		
F6QEX4              	12.04%		
H2XYP9              	10.62%		
Q1RLE2              	10.14%		
F6U7B2              	7.77%		
Q4H2L1              	6.81%		
Q1RLE5              	6.18%		
Bootstrap support for H2XZX8 as seed ortholog is 100%.
Bootstrap support for G3JR45 as seed ortholog is 100%.

Group of orthologs #1715. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

F6YQI1              	100.00%		G3J4Y4              	100.00%
F7A3S4              	73.65%		
Bootstrap support for F6YQI1 as seed ortholog is 100%.
Bootstrap support for G3J4Y4 as seed ortholog is 100%.

Group of orthologs #1716. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

F6YTT5              	100.00%		G3J4P8              	100.00%
H2XVF4              	12.45%		
Bootstrap support for F6YTT5 as seed ortholog is 100%.
Bootstrap support for G3J4P8 as seed ortholog is 100%.

Group of orthologs #1717. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

F6SKW2              	100.00%		G3J6D1              	100.00%
Bootstrap support for F6SKW2 as seed ortholog is 100%.
Bootstrap support for G3J6D1 as seed ortholog is 100%.

Group of orthologs #1718. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

F6UXY9              	100.00%		G3JHV1              	100.00%
Bootstrap support for F6UXY9 as seed ortholog is 100%.
Bootstrap support for G3JHV1 as seed ortholog is 100%.

Group of orthologs #1719. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

H2XK95              	100.00%		G3J7R8              	100.00%
Bootstrap support for H2XK95 as seed ortholog is 100%.
Bootstrap support for G3J7R8 as seed ortholog is 100%.

Group of orthologs #1720. Best score 86 bits
Score difference with first non-orthologous sequence - C.intestinalis:86 C.militaris:86

H2XRT6              	100.00%		G3JHX2              	100.00%
Bootstrap support for H2XRT6 as seed ortholog is 100%.
Bootstrap support for G3JHX2 as seed ortholog is 100%.

Group of orthologs #1721. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.militaris:85

H2XMB9              	100.00%		G3J7T6              	100.00%
Bootstrap support for H2XMB9 as seed ortholog is 100%.
Bootstrap support for G3J7T6 as seed ortholog is 100%.

Group of orthologs #1722. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.militaris:85

H2XKP6              	100.00%		G3JAF4              	100.00%
Bootstrap support for H2XKP6 as seed ortholog is 100%.
Bootstrap support for G3JAF4 as seed ortholog is 100%.

Group of orthologs #1723. Best score 85 bits
Score difference with first non-orthologous sequence - C.intestinalis:85 C.militaris:85

H2Y1A3              	100.00%		G3J896              	100.00%
Bootstrap support for H2Y1A3 as seed ortholog is 100%.
Bootstrap support for G3J896 as seed ortholog is 100%.

Group of orthologs #1724. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:3

F6USY8              	100.00%		G3JFZ6              	100.00%
Bootstrap support for F6USY8 as seed ortholog is 100%.
Bootstrap support for G3JFZ6 as seed ortholog is 81%.

Group of orthologs #1725. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:84

F6ZA98              	100.00%		G3J958              	100.00%
Bootstrap support for F6ZA98 as seed ortholog is 100%.
Bootstrap support for G3J958 as seed ortholog is 100%.

Group of orthologs #1726. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:84

F7B6C9              	100.00%		G3J8I5              	100.00%
Bootstrap support for F7B6C9 as seed ortholog is 100%.
Bootstrap support for G3J8I5 as seed ortholog is 100%.

Group of orthologs #1727. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:84

H2XKM5              	100.00%		G3J953              	100.00%
Bootstrap support for H2XKM5 as seed ortholog is 100%.
Bootstrap support for G3J953 as seed ortholog is 100%.

Group of orthologs #1728. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:84

F6Y4F7              	100.00%		G3JK63              	100.00%
Bootstrap support for F6Y4F7 as seed ortholog is 100%.
Bootstrap support for G3JK63 as seed ortholog is 100%.

Group of orthologs #1729. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:84

F6YAM0              	100.00%		G3JU91              	100.00%
Bootstrap support for F6YAM0 as seed ortholog is 100%.
Bootstrap support for G3JU91 as seed ortholog is 100%.

Group of orthologs #1730. Best score 84 bits
Score difference with first non-orthologous sequence - C.intestinalis:84 C.militaris:84

H2Y0H4              	100.00%		G3JCH5              	100.00%
Bootstrap support for H2Y0H4 as seed ortholog is 100%.
Bootstrap support for G3JCH5 as seed ortholog is 100%.

Group of orthologs #1731. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:83

F6TEV5              	100.00%		G3JE71              	100.00%
Bootstrap support for F6TEV5 as seed ortholog is 100%.
Bootstrap support for G3JE71 as seed ortholog is 100%.

Group of orthologs #1732. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:83

F6QKM5              	100.00%		G3JLN7              	100.00%
Bootstrap support for F6QKM5 as seed ortholog is 100%.
Bootstrap support for G3JLN7 as seed ortholog is 100%.

Group of orthologs #1733. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:83

F6X034              	100.00%		G3J900              	100.00%
Bootstrap support for F6X034 as seed ortholog is 100%.
Bootstrap support for G3J900 as seed ortholog is 100%.

Group of orthologs #1734. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:83

F6QW82              	100.00%		G3JTQ2              	100.00%
Bootstrap support for F6QW82 as seed ortholog is 100%.
Bootstrap support for G3JTQ2 as seed ortholog is 100%.

Group of orthologs #1735. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:83

H2XUU8              	100.00%		G3J512              	100.00%
Bootstrap support for H2XUU8 as seed ortholog is 100%.
Bootstrap support for G3J512 as seed ortholog is 100%.

Group of orthologs #1736. Best score 83 bits
Score difference with first non-orthologous sequence - C.intestinalis:83 C.militaris:83

H2XQ41              	100.00%		G3JJN4              	100.00%
Bootstrap support for H2XQ41 as seed ortholog is 100%.
Bootstrap support for G3JJN4 as seed ortholog is 100%.

Group of orthologs #1737. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:82

H2XUX5              	100.00%		G3JN87              	100.00%
H2XX60              	15.76%		
F6TUQ2              	11.97%		
Bootstrap support for H2XUX5 as seed ortholog is 100%.
Bootstrap support for G3JN87 as seed ortholog is 100%.

Group of orthologs #1738. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:32 C.militaris:19

F6THW7              	100.00%		G3J7N6              	100.00%
                    	       		G3J473              	43.37%
Bootstrap support for F6THW7 as seed ortholog is 75%.
Bootstrap support for G3J7N6 as seed ortholog is 71%.
Alternative seed ortholog is G3J2P8 (19 bits away from this cluster)

Group of orthologs #1739. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:82

F6RJQ4              	100.00%		G3JRJ0              	100.00%
                    	       		G3J6N8              	7.62%
Bootstrap support for F6RJQ4 as seed ortholog is 100%.
Bootstrap support for G3JRJ0 as seed ortholog is 100%.

Group of orthologs #1740. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:82

F6R901              	100.00%		G3J4F3              	100.00%
Bootstrap support for F6R901 as seed ortholog is 100%.
Bootstrap support for G3J4F3 as seed ortholog is 100%.

Group of orthologs #1741. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:8 C.militaris:82

F6QD73              	100.00%		G3JA69              	100.00%
Bootstrap support for F6QD73 as seed ortholog is 57%.
Alternative seed ortholog is F6PWM6 (8 bits away from this cluster)
Bootstrap support for G3JA69 as seed ortholog is 100%.

Group of orthologs #1742. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:39 C.militaris:82

H2XQR7              	100.00%		G3J2S8              	100.00%
Bootstrap support for H2XQR7 as seed ortholog is 83%.
Bootstrap support for G3J2S8 as seed ortholog is 100%.

Group of orthologs #1743. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:27

F6ZFW2              	100.00%		G3JIB4              	100.00%
Bootstrap support for F6ZFW2 as seed ortholog is 100%.
Bootstrap support for G3JIB4 as seed ortholog is 78%.

Group of orthologs #1744. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:82

F6YZ79              	100.00%		G3JKW8              	100.00%
Bootstrap support for F6YZ79 as seed ortholog is 100%.
Bootstrap support for G3JKW8 as seed ortholog is 100%.

Group of orthologs #1745. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:82

H2XWQ2              	100.00%		G3J3S1              	100.00%
Bootstrap support for H2XWQ2 as seed ortholog is 100%.
Bootstrap support for G3J3S1 as seed ortholog is 100%.

Group of orthologs #1746. Best score 82 bits
Score difference with first non-orthologous sequence - C.intestinalis:82 C.militaris:82

F6YIK6              	100.00%		G3JP41              	100.00%
Bootstrap support for F6YIK6 as seed ortholog is 100%.
Bootstrap support for G3JP41 as seed ortholog is 100%.

Group of orthologs #1747. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

F6SBJ2              	100.00%		G3JNP0              	100.00%
H2XM96              	12.95%		
Bootstrap support for F6SBJ2 as seed ortholog is 100%.
Bootstrap support for G3JNP0 as seed ortholog is 100%.

Group of orthologs #1748. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

F6QGW5              	100.00%		G3JBC5              	100.00%
Bootstrap support for F6QGW5 as seed ortholog is 100%.
Bootstrap support for G3JBC5 as seed ortholog is 100%.

Group of orthologs #1749. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

F6R035              	100.00%		G3JBG1              	100.00%
Bootstrap support for F6R035 as seed ortholog is 100%.
Bootstrap support for G3JBG1 as seed ortholog is 100%.

Group of orthologs #1750. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

F6ZLT0              	100.00%		G3J4R9              	100.00%
Bootstrap support for F6ZLT0 as seed ortholog is 100%.
Bootstrap support for G3J4R9 as seed ortholog is 100%.

Group of orthologs #1751. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

F6YVQ1              	100.00%		G3J9W4              	100.00%
Bootstrap support for F6YVQ1 as seed ortholog is 100%.
Bootstrap support for G3J9W4 as seed ortholog is 100%.

Group of orthologs #1752. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

F6WJ25              	100.00%		G3JGK0              	100.00%
Bootstrap support for F6WJ25 as seed ortholog is 100%.
Bootstrap support for G3JGK0 as seed ortholog is 100%.

Group of orthologs #1753. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

H2XWE8              	100.00%		G3J6M1              	100.00%
Bootstrap support for H2XWE8 as seed ortholog is 100%.
Bootstrap support for G3J6M1 as seed ortholog is 100%.

Group of orthologs #1754. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

H2XYU0              	100.00%		G3J914              	100.00%
Bootstrap support for H2XYU0 as seed ortholog is 100%.
Bootstrap support for G3J914 as seed ortholog is 100%.

Group of orthologs #1755. Best score 81 bits
Score difference with first non-orthologous sequence - C.intestinalis:81 C.militaris:81

H2XT92              	100.00%		G3JKN1              	100.00%
Bootstrap support for H2XT92 as seed ortholog is 100%.
Bootstrap support for G3JKN1 as seed ortholog is 100%.

Group of orthologs #1756. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:80

F6SD13              	100.00%		G3J4Q3              	100.00%
Bootstrap support for F6SD13 as seed ortholog is 100%.
Bootstrap support for G3J4Q3 as seed ortholog is 100%.

Group of orthologs #1757. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:80

F6QEH8              	100.00%		G3JA23              	100.00%
Bootstrap support for F6QEH8 as seed ortholog is 100%.
Bootstrap support for G3JA23 as seed ortholog is 100%.

Group of orthologs #1758. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:80

F6XR53              	100.00%		G3J661              	100.00%
Bootstrap support for F6XR53 as seed ortholog is 100%.
Bootstrap support for G3J661 as seed ortholog is 100%.

Group of orthologs #1759. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:26 C.militaris:80

F6WG20              	100.00%		G3JHF0              	100.00%
Bootstrap support for F6WG20 as seed ortholog is 80%.
Bootstrap support for G3JHF0 as seed ortholog is 100%.

Group of orthologs #1760. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:80

F6S014              	100.00%		G3JSD7              	100.00%
Bootstrap support for F6S014 as seed ortholog is 100%.
Bootstrap support for G3JSD7 as seed ortholog is 100%.

Group of orthologs #1761. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:80

H2XVS4              	100.00%		G3JJ97              	100.00%
Bootstrap support for H2XVS4 as seed ortholog is 100%.
Bootstrap support for G3JJ97 as seed ortholog is 100%.

Group of orthologs #1762. Best score 80 bits
Score difference with first non-orthologous sequence - C.intestinalis:80 C.militaris:80

H2Y100              	100.00%		G3JHI1              	100.00%
Bootstrap support for H2Y100 as seed ortholog is 100%.
Bootstrap support for G3JHI1 as seed ortholog is 100%.

Group of orthologs #1763. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

F7AUP3              	100.00%		G3JDE4              	100.00%
F7AY96              	89.95%		
F7AV59              	68.18%		
L7N0S5              	64.11%		
F6ZYU1              	48.09%		
Bootstrap support for F7AUP3 as seed ortholog is 100%.
Bootstrap support for G3JDE4 as seed ortholog is 100%.

Group of orthologs #1764. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:11

F6YXQ0              	100.00%		G3JNV0              	100.00%
H2XXT0              	12.50%		
Bootstrap support for F6YXQ0 as seed ortholog is 100%.
Bootstrap support for G3JNV0 as seed ortholog is 68%.
Alternative seed ortholog is G3J3E7 (11 bits away from this cluster)

Group of orthologs #1765. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

F6R1Q7              	100.00%		G3J5S0              	100.00%
Bootstrap support for F6R1Q7 as seed ortholog is 100%.
Bootstrap support for G3J5S0 as seed ortholog is 100%.

Group of orthologs #1766. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

F6V2B2              	100.00%		G3J3W1              	100.00%
Bootstrap support for F6V2B2 as seed ortholog is 100%.
Bootstrap support for G3J3W1 as seed ortholog is 100%.

Group of orthologs #1767. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

F6YK36              	100.00%		G3J741              	100.00%
Bootstrap support for F6YK36 as seed ortholog is 100%.
Bootstrap support for G3J741 as seed ortholog is 100%.

Group of orthologs #1768. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

F6WZ37              	100.00%		G3JB37              	100.00%
Bootstrap support for F6WZ37 as seed ortholog is 100%.
Bootstrap support for G3JB37 as seed ortholog is 100%.

Group of orthologs #1769. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

F6UTS4              	100.00%		G3JHP6              	100.00%
Bootstrap support for F6UTS4 as seed ortholog is 100%.
Bootstrap support for G3JHP6 as seed ortholog is 100%.

Group of orthologs #1770. Best score 79 bits
Score difference with first non-orthologous sequence - C.intestinalis:79 C.militaris:79

H2Y2U3              	100.00%		G3JN55              	100.00%
Bootstrap support for H2Y2U3 as seed ortholog is 100%.
Bootstrap support for G3JN55 as seed ortholog is 100%.

Group of orthologs #1771. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:23 C.militaris:78

F6YFU4              	100.00%		G3JAN4              	100.00%
F6YFZ5              	61.08%		G3JTC7              	33.33%
Bootstrap support for F6YFU4 as seed ortholog is 71%.
Alternative seed ortholog is F6ZTL3 (23 bits away from this cluster)
Bootstrap support for G3JAN4 as seed ortholog is 100%.

Group of orthologs #1772. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F7AZY1              	100.00%		G3JQQ1              	100.00%
F7B7S8              	13.46%		
F6SYR3              	9.73%		
Bootstrap support for F7AZY1 as seed ortholog is 100%.
Bootstrap support for G3JQQ1 as seed ortholog is 100%.

Group of orthologs #1773. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F6T2X1              	100.00%		G3JA97              	100.00%
Bootstrap support for F6T2X1 as seed ortholog is 100%.
Bootstrap support for G3JA97 as seed ortholog is 100%.

Group of orthologs #1774. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:30

F6WQJ1              	100.00%		G3J532              	100.00%
Bootstrap support for F6WQJ1 as seed ortholog is 100%.
Bootstrap support for G3J532 as seed ortholog is 93%.

Group of orthologs #1775. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F6SKU8              	100.00%		G3JFK9              	100.00%
Bootstrap support for F6SKU8 as seed ortholog is 100%.
Bootstrap support for G3JFK9 as seed ortholog is 100%.

Group of orthologs #1776. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F6WPK3              	100.00%		G3JGS9              	100.00%
Bootstrap support for F6WPK3 as seed ortholog is 100%.
Bootstrap support for G3JGS9 as seed ortholog is 100%.

Group of orthologs #1777. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F6YWH4              	100.00%		G3JCR4              	100.00%
Bootstrap support for F6YWH4 as seed ortholog is 100%.
Bootstrap support for G3JCR4 as seed ortholog is 100%.

Group of orthologs #1778. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F7B2Y0              	100.00%		G3JF65              	100.00%
Bootstrap support for F7B2Y0 as seed ortholog is 100%.
Bootstrap support for G3JF65 as seed ortholog is 100%.

Group of orthologs #1779. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F7AXI1              	100.00%		G3JFX2              	100.00%
Bootstrap support for F7AXI1 as seed ortholog is 100%.
Bootstrap support for G3JFX2 as seed ortholog is 100%.

Group of orthologs #1780. Best score 78 bits
Score difference with first non-orthologous sequence - C.intestinalis:78 C.militaris:78

F6Z0W4              	100.00%		G3JU80              	100.00%
Bootstrap support for F6Z0W4 as seed ortholog is 100%.
Bootstrap support for G3JU80 as seed ortholog is 100%.

Group of orthologs #1781. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

F6Y1U4              	100.00%		G3J7Q6              	100.00%
F6VAE3              	24.15%		G3JDX6              	100.00%
                    	       		G3JML2              	53.97%
                    	       		G3JAY7              	43.71%
                    	       		G3JIK4              	38.96%
                    	       		G3JCU5              	26.60%
                    	       		G3JJG2              	25.39%
                    	       		G3JRF8              	23.84%
                    	       		G3JAI2              	22.30%
                    	       		G3JGD0              	22.30%
                    	       		G3J5L7              	22.30%
                    	       		G3J4F5              	20.09%
                    	       		G3JRF5              	18.54%
                    	       		G3JE45              	16.00%
                    	       		G3JRE0              	15.78%
                    	       		G3JRT4              	15.12%
                    	       		G3JLD0              	14.46%
                    	       		G3J891              	14.13%
                    	       		G3J6D8              	12.51%
                    	       		G3JN16              	11.92%
                    	       		G3JAQ7              	11.81%
                    	       		G3JKG5              	11.04%
                    	       		G3J980              	8.50%
                    	       		G3JIJ5              	7.95%
                    	       		G3JC79              	7.73%
                    	       		G3JDP9              	6.62%
                    	       		G3JCM3              	5.70%
                    	       		G3JIZ0              	5.19%
Bootstrap support for F6Y1U4 as seed ortholog is 100%.
Bootstrap support for G3J7Q6 as seed ortholog is 100%.
Bootstrap support for G3JDX6 as seed ortholog is 100%.

Group of orthologs #1782. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:27

F6TNX0              	100.00%		G3J367              	100.00%
H2Y033              	34.73%		G3J6G2              	14.65%
H2XZ80              	23.19%		G3JU18              	11.70%
F6WIM7              	22.74%		
F6YLB5              	19.34%		
F6TXG4              	16.97%		
H2XRE5              	15.50%		
H2XSM1              	15.16%		
H2XY52              	13.91%		
F6Y4W3              	12.33%		
H2XWP1              	8.37%		
Bootstrap support for F6TNX0 as seed ortholog is 100%.
Bootstrap support for G3J367 as seed ortholog is 79%.

Group of orthologs #1783. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:9

H2XM23              	100.00%		G3JJ35              	100.00%
                    	       		G3JE87              	22.19%
                    	       		G3JK00              	21.06%
                    	       		G3J2U2              	18.98%
                    	       		G3J5F9              	15.30%
                    	       		G3JBE5              	12.18%
                    	       		G3JQS4              	9.82%
                    	       		G3JI55              	9.63%
                    	       		G3J2U7              	8.03%
                    	       		G3JME4              	7.46%
Bootstrap support for H2XM23 as seed ortholog is 100%.
Bootstrap support for G3JJ35 as seed ortholog is 56%.
Alternative seed ortholog is G3J657 (9 bits away from this cluster)

Group of orthologs #1784. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

F6T052              	100.00%		G3JDY8              	100.00%
Bootstrap support for F6T052 as seed ortholog is 100%.
Bootstrap support for G3JDY8 as seed ortholog is 100%.

Group of orthologs #1785. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

F6PZV6              	100.00%		G3JR10              	100.00%
Bootstrap support for F6PZV6 as seed ortholog is 100%.
Bootstrap support for G3JR10 as seed ortholog is 100%.

Group of orthologs #1786. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:27

F6S8K0              	100.00%		G3JNR6              	100.00%
Bootstrap support for F6S8K0 as seed ortholog is 100%.
Bootstrap support for G3JNR6 as seed ortholog is 79%.

Group of orthologs #1787. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

F6W7H5              	100.00%		G3JF87              	100.00%
Bootstrap support for F6W7H5 as seed ortholog is 100%.
Bootstrap support for G3JF87 as seed ortholog is 100%.

Group of orthologs #1788. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

F6TUV6              	100.00%		G3JT19              	100.00%
Bootstrap support for F6TUV6 as seed ortholog is 100%.
Bootstrap support for G3JT19 as seed ortholog is 100%.

Group of orthologs #1789. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

H2XJX4              	100.00%		G3JFC4              	100.00%
Bootstrap support for H2XJX4 as seed ortholog is 100%.
Bootstrap support for G3JFC4 as seed ortholog is 100%.

Group of orthologs #1790. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

H2XSS0              	100.00%		G3JCT0              	100.00%
Bootstrap support for H2XSS0 as seed ortholog is 100%.
Bootstrap support for G3JCT0 as seed ortholog is 100%.

Group of orthologs #1791. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

H2XM22              	100.00%		G3JJ13              	100.00%
Bootstrap support for H2XM22 as seed ortholog is 100%.
Bootstrap support for G3JJ13 as seed ortholog is 100%.

Group of orthologs #1792. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

H2XZW2              	100.00%		G3J756              	100.00%
Bootstrap support for H2XZW2 as seed ortholog is 100%.
Bootstrap support for G3J756 as seed ortholog is 100%.

Group of orthologs #1793. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

H2Y2S5              	100.00%		G3J7G4              	100.00%
Bootstrap support for H2Y2S5 as seed ortholog is 100%.
Bootstrap support for G3J7G4 as seed ortholog is 100%.

Group of orthologs #1794. Best score 77 bits
Score difference with first non-orthologous sequence - C.intestinalis:77 C.militaris:77

H2XVT6              	100.00%		G3JRD9              	100.00%
Bootstrap support for H2XVT6 as seed ortholog is 100%.
Bootstrap support for G3JRD9 as seed ortholog is 100%.

Group of orthologs #1795. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:76

H2XJI9              	100.00%		G3JKM7              	100.00%
                    	       		G3JQQ9              	100.00%
Bootstrap support for H2XJI9 as seed ortholog is 100%.
Bootstrap support for G3JKM7 as seed ortholog is 100%.
Bootstrap support for G3JQQ9 as seed ortholog is 100%.

Group of orthologs #1796. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:76

F6RQC5              	100.00%		G3JKU2              	100.00%
Bootstrap support for F6RQC5 as seed ortholog is 100%.
Bootstrap support for G3JKU2 as seed ortholog is 100%.

Group of orthologs #1797. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:76

F6PKA8              	100.00%		G3JSA1              	100.00%
Bootstrap support for F6PKA8 as seed ortholog is 100%.
Bootstrap support for G3JSA1 as seed ortholog is 100%.

Group of orthologs #1798. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:76

F7AG76              	100.00%		G3JCX5              	100.00%
Bootstrap support for F7AG76 as seed ortholog is 100%.
Bootstrap support for G3JCX5 as seed ortholog is 100%.

Group of orthologs #1799. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:76

H2XPE3              	100.00%		G3J6W0              	100.00%
Bootstrap support for H2XPE3 as seed ortholog is 100%.
Bootstrap support for G3J6W0 as seed ortholog is 100%.

Group of orthologs #1800. Best score 76 bits
Score difference with first non-orthologous sequence - C.intestinalis:76 C.militaris:76

F6XR12              	100.00%		G3JSK5              	100.00%
Bootstrap support for F6XR12 as seed ortholog is 100%.
Bootstrap support for G3JSK5 as seed ortholog is 100%.

Group of orthologs #1801. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:75

F6X073              	100.00%		G3J349              	100.00%
Bootstrap support for F6X073 as seed ortholog is 100%.
Bootstrap support for G3J349 as seed ortholog is 100%.

Group of orthologs #1802. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:75

F6VAW2              	100.00%		G3JDD3              	100.00%
Bootstrap support for F6VAW2 as seed ortholog is 100%.
Bootstrap support for G3JDD3 as seed ortholog is 100%.

Group of orthologs #1803. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:21

F6YNB1              	100.00%		G3JEI0              	100.00%
Bootstrap support for F6YNB1 as seed ortholog is 100%.
Bootstrap support for G3JEI0 as seed ortholog is 80%.

Group of orthologs #1804. Best score 75 bits
Score difference with first non-orthologous sequence - C.intestinalis:75 C.militaris:75

F6YWI2              	100.00%		G3JMZ8              	100.00%
Bootstrap support for F6YWI2 as seed ortholog is 100%.
Bootstrap support for G3JMZ8 as seed ortholog is 100%.

Group of orthologs #1805. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:6

F6S271              	100.00%		G3J382              	100.00%
F6QM62              	22.42%		G3JFX5              	5.81%
H2Y212              	12.40%		
F6TY79              	11.85%		
H2XXG9              	11.58%		
H2XWY5              	10.48%		
F6TMW8              	10.39%		
H2XPD7              	8.66%		
F6ZSP8              	8.39%		
F6ZSV0              	6.20%		
F6RLF9              	5.74%		
Bootstrap support for F6S271 as seed ortholog is 100%.
Bootstrap support for G3J382 as seed ortholog is 50%.
Alternative seed ortholog is G3JNJ7 (6 bits away from this cluster)

Group of orthologs #1806. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F6Y321              	100.00%		G3J4J5              	100.00%
                    	       		G3JNS7              	15.51%
Bootstrap support for F6Y321 as seed ortholog is 100%.
Bootstrap support for G3J4J5 as seed ortholog is 100%.

Group of orthologs #1807. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F7BHL8              	100.00%		G3JP03              	100.00%
F7AEM1              	10.84%		
Bootstrap support for F7BHL8 as seed ortholog is 100%.
Bootstrap support for G3JP03 as seed ortholog is 100%.

Group of orthologs #1808. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F7A7X6              	100.00%		G3JTN0              	100.00%
H2XTL6              	11.66%		
Bootstrap support for F7A7X6 as seed ortholog is 100%.
Bootstrap support for G3JTN0 as seed ortholog is 100%.

Group of orthologs #1809. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F6T5I8              	100.00%		G3J8F8              	100.00%
Bootstrap support for F6T5I8 as seed ortholog is 100%.
Bootstrap support for G3J8F8 as seed ortholog is 100%.

Group of orthologs #1810. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F6XCL4              	100.00%		G3J626              	100.00%
Bootstrap support for F6XCL4 as seed ortholog is 100%.
Bootstrap support for G3J626 as seed ortholog is 100%.

Group of orthologs #1811. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F7A6C5              	100.00%		G3J7G3              	100.00%
Bootstrap support for F7A6C5 as seed ortholog is 100%.
Bootstrap support for G3J7G3 as seed ortholog is 100%.

Group of orthologs #1812. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:74 C.militaris:74

F6WRK0              	100.00%		G3JK65              	100.00%
Bootstrap support for F6WRK0 as seed ortholog is 100%.
Bootstrap support for G3JK65 as seed ortholog is 100%.

Group of orthologs #1813. Best score 74 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 C.militaris:9

F6YBL5              	100.00%		G3JKD2              	100.00%
Bootstrap support for F6YBL5 as seed ortholog is 48%.
Alternative seed ortholog is H2XQH7 (15 bits away from this cluster)
Bootstrap support for G3JKD2 as seed ortholog is 78%.

Group of orthologs #1814. Best score 73 bits
Score difference with first non-orthologous sequence - C.intestinalis:73 C.militaris:73

F6TZC4              	100.00%		G3JUP6              	100.00%
Bootstrap support for F6TZC4 as seed ortholog is 100%.
Bootstrap support for G3JUP6 as seed ortholog is 100%.

Group of orthologs #1815. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:16 C.militaris:9

F6Y6M4              	100.00%		G3JP26              	100.00%
F6VKL9              	40.78%		G3J624              	33.48%
Bootstrap support for F6Y6M4 as seed ortholog is 75%.
Bootstrap support for G3JP26 as seed ortholog is 60%.
Alternative seed ortholog is G3JQF9 (9 bits away from this cluster)

Group of orthologs #1816. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 C.militaris:72

F6QKB5              	100.00%		G3J6A7              	100.00%
Bootstrap support for F6QKB5 as seed ortholog is 100%.
Bootstrap support for G3J6A7 as seed ortholog is 100%.

Group of orthologs #1817. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 C.militaris:72

F6SDE2              	100.00%		G3J775              	100.00%
Bootstrap support for F6SDE2 as seed ortholog is 100%.
Bootstrap support for G3J775 as seed ortholog is 100%.

Group of orthologs #1818. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 C.militaris:72

F6ZI65              	100.00%		G3JIY7              	100.00%
Bootstrap support for F6ZI65 as seed ortholog is 100%.
Bootstrap support for G3JIY7 as seed ortholog is 100%.

Group of orthologs #1819. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 C.militaris:72

F7BEK1              	100.00%		G3JJV4              	100.00%
Bootstrap support for F7BEK1 as seed ortholog is 100%.
Bootstrap support for G3JJV4 as seed ortholog is 100%.

Group of orthologs #1820. Best score 72 bits
Score difference with first non-orthologous sequence - C.intestinalis:72 C.militaris:72

H2XRC4              	100.00%		G3JLU9              	100.00%
Bootstrap support for H2XRC4 as seed ortholog is 100%.
Bootstrap support for G3JLU9 as seed ortholog is 100%.

Group of orthologs #1821. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:11 C.militaris:71

F6TER2              	100.00%		G3JTW1              	100.00%
F6QML6              	23.60%		G3JDU8              	43.34%
                    	       		G3JRN2              	25.73%
                    	       		G3JGL1              	15.80%
                    	       		G3JBR4              	11.06%
                    	       		G3JRY1              	10.84%
                    	       		G3J3D7              	10.38%
                    	       		G3J7D1              	8.13%
                    	       		G3JFS3              	6.77%
                    	       		G3JPD1              	5.42%
Bootstrap support for F6TER2 as seed ortholog is 65%.
Alternative seed ortholog is F6PIA1 (11 bits away from this cluster)
Bootstrap support for G3JTW1 as seed ortholog is 100%.

Group of orthologs #1822. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:26 C.militaris:71

F6W4Z8              	100.00%		G3JIW2              	100.00%
                    	       		G3J9S7              	44.21%
Bootstrap support for F6W4Z8 as seed ortholog is 83%.
Bootstrap support for G3JIW2 as seed ortholog is 100%.

Group of orthologs #1823. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:71

F6QDF2              	100.00%		G3JD35              	100.00%
Bootstrap support for F6QDF2 as seed ortholog is 100%.
Bootstrap support for G3JD35 as seed ortholog is 100%.

Group of orthologs #1824. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:71

F6Z0L2              	100.00%		G3JDC4              	100.00%
Bootstrap support for F6Z0L2 as seed ortholog is 100%.
Bootstrap support for G3JDC4 as seed ortholog is 100%.

Group of orthologs #1825. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:18

F6XHB2              	100.00%		G3JHU7              	100.00%
Bootstrap support for F6XHB2 as seed ortholog is 100%.
Bootstrap support for G3JHU7 as seed ortholog is 65%.
Alternative seed ortholog is G3JDT2 (18 bits away from this cluster)

Group of orthologs #1826. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:71

H2XUZ2              	100.00%		G3JK25              	100.00%
Bootstrap support for H2XUZ2 as seed ortholog is 100%.
Bootstrap support for G3JK25 as seed ortholog is 100%.

Group of orthologs #1827. Best score 71 bits
Score difference with first non-orthologous sequence - C.intestinalis:71 C.militaris:71

Q1RL82              	100.00%		G3JN10              	100.00%
Bootstrap support for Q1RL82 as seed ortholog is 100%.
Bootstrap support for G3JN10 as seed ortholog is 100%.

Group of orthologs #1828. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.militaris:70

F6PJI6              	100.00%		G3JD69              	100.00%
Q07068              	100.00%		
F6TT18              	44.10%		
Bootstrap support for F6PJI6 as seed ortholog is 100%.
Bootstrap support for Q07068 as seed ortholog is 100%.
Bootstrap support for G3JD69 as seed ortholog is 100%.

Group of orthologs #1829. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.militaris:70

H2Y0I5              	100.00%		G3JC56              	100.00%
                    	       		G3JK84              	20.04%
Bootstrap support for H2Y0I5 as seed ortholog is 100%.
Bootstrap support for G3JC56 as seed ortholog is 100%.

Group of orthologs #1830. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.militaris:70

F6PJS6              	100.00%		G3J6A2              	100.00%
Bootstrap support for F6PJS6 as seed ortholog is 100%.
Bootstrap support for G3J6A2 as seed ortholog is 100%.

Group of orthologs #1831. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.militaris:70

F6QIW3              	100.00%		G3JCV1              	100.00%
Bootstrap support for F6QIW3 as seed ortholog is 100%.
Bootstrap support for G3JCV1 as seed ortholog is 100%.

Group of orthologs #1832. Best score 70 bits
Score difference with first non-orthologous sequence - C.intestinalis:70 C.militaris:28

H2XTT8              	100.00%		G3J459              	100.00%
Bootstrap support for H2XTT8 as seed ortholog is 100%.
Bootstrap support for G3J459 as seed ortholog is 95%.

Group of orthologs #1833. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

F6UQX1              	100.00%		G3JPS9              	100.00%
H2XKI3              	6.60%		G3J3I0              	34.21%
                    	       		G3J6B2              	15.29%
Bootstrap support for F6UQX1 as seed ortholog is 100%.
Bootstrap support for G3JPS9 as seed ortholog is 100%.

Group of orthologs #1834. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

F6R1K9              	100.00%		G3J826              	100.00%
F6XY36              	20.96%		
Bootstrap support for F6R1K9 as seed ortholog is 100%.
Bootstrap support for G3J826 as seed ortholog is 100%.

Group of orthologs #1835. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

F6WH38              	100.00%		G3JEX1              	100.00%
Bootstrap support for F6WH38 as seed ortholog is 100%.
Bootstrap support for G3JEX1 as seed ortholog is 100%.

Group of orthologs #1836. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

F7AWW1              	100.00%		G3JCE4              	100.00%
Bootstrap support for F7AWW1 as seed ortholog is 100%.
Bootstrap support for G3JCE4 as seed ortholog is 100%.

Group of orthologs #1837. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

F6YWD0              	100.00%		G3JN90              	100.00%
Bootstrap support for F6YWD0 as seed ortholog is 100%.
Bootstrap support for G3JN90 as seed ortholog is 100%.

Group of orthologs #1838. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

H2XKD8              	100.00%		G3JH97              	100.00%
Bootstrap support for H2XKD8 as seed ortholog is 100%.
Bootstrap support for G3JH97 as seed ortholog is 100%.

Group of orthologs #1839. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

H2Y026              	100.00%		G3JD66              	100.00%
Bootstrap support for H2Y026 as seed ortholog is 100%.
Bootstrap support for G3JD66 as seed ortholog is 100%.

Group of orthologs #1840. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

H2XT41              	100.00%		G3JKD8              	100.00%
Bootstrap support for H2XT41 as seed ortholog is 100%.
Bootstrap support for G3JKD8 as seed ortholog is 100%.

Group of orthologs #1841. Best score 69 bits
Score difference with first non-orthologous sequence - C.intestinalis:69 C.militaris:69

H2XWJ8              	100.00%		G3JNG4              	100.00%
Bootstrap support for H2XWJ8 as seed ortholog is 100%.
Bootstrap support for G3JNG4 as seed ortholog is 100%.

Group of orthologs #1842. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 C.militaris:68

F6ZUV3              	100.00%		G3J7G5              	100.00%
F6T4U7              	40.30%		
Bootstrap support for F6ZUV3 as seed ortholog is 100%.
Bootstrap support for G3J7G5 as seed ortholog is 100%.

Group of orthologs #1843. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:15 C.militaris:68

F6SU68              	100.00%		G3JSM6              	100.00%
F6U4M6              	13.73%		
Bootstrap support for F6SU68 as seed ortholog is 80%.
Bootstrap support for G3JSM6 as seed ortholog is 100%.

Group of orthologs #1844. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:2 C.militaris:68

F6YUP9              	100.00%		G3JDY6              	100.00%
Bootstrap support for F6YUP9 as seed ortholog is 60%.
Alternative seed ortholog is F6TQ79 (2 bits away from this cluster)
Bootstrap support for G3JDY6 as seed ortholog is 100%.

Group of orthologs #1845. Best score 68 bits
Score difference with first non-orthologous sequence - C.intestinalis:68 C.militaris:68

H2XYU8              	100.00%		G3JE67              	100.00%
Bootstrap support for H2XYU8 as seed ortholog is 100%.
Bootstrap support for G3JE67 as seed ortholog is 100%.

Group of orthologs #1846. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

F6ZW37              	100.00%		G3J815              	100.00%
F7AWQ7              	11.26%		G3J9R9              	20.91%
                    	       		G3JDK8              	20.61%
Bootstrap support for F6ZW37 as seed ortholog is 100%.
Bootstrap support for G3J815 as seed ortholog is 100%.

Group of orthologs #1847. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

F6VTD9              	100.00%		G3JUS1              	100.00%
F6SF06              	40.40%		
F6YQB8              	17.20%		
Bootstrap support for F6VTD9 as seed ortholog is 100%.
Bootstrap support for G3JUS1 as seed ortholog is 100%.

Group of orthologs #1848. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

F6VD90              	100.00%		G3JNH8              	100.00%
                    	       		G3JGE8              	19.84%
Bootstrap support for F6VD90 as seed ortholog is 100%.
Bootstrap support for G3JNH8 as seed ortholog is 100%.

Group of orthologs #1849. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

F6WUC3              	100.00%		G3JIL3              	100.00%
Bootstrap support for F6WUC3 as seed ortholog is 100%.
Bootstrap support for G3JIL3 as seed ortholog is 100%.

Group of orthologs #1850. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

F6XMZ3              	100.00%		G3JT33              	100.00%
Bootstrap support for F6XMZ3 as seed ortholog is 100%.
Bootstrap support for G3JT33 as seed ortholog is 100%.

Group of orthologs #1851. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

H2XR90              	100.00%		G3JEL8              	100.00%
Bootstrap support for H2XR90 as seed ortholog is 100%.
Bootstrap support for G3JEL8 as seed ortholog is 100%.

Group of orthologs #1852. Best score 67 bits
Score difference with first non-orthologous sequence - C.intestinalis:67 C.militaris:67

F7BFF4              	100.00%		G3JQP6              	100.00%
Bootstrap support for F7BFF4 as seed ortholog is 100%.
Bootstrap support for G3JQP6 as seed ortholog is 100%.

Group of orthologs #1853. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:15

F6UAY9              	100.00%		G3J7Z8              	100.00%
Bootstrap support for F6UAY9 as seed ortholog is 100%.
Bootstrap support for G3J7Z8 as seed ortholog is 64%.
Alternative seed ortholog is G3JEA9 (15 bits away from this cluster)

Group of orthologs #1854. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

F6QSD6              	100.00%		G3JFT4              	100.00%
Bootstrap support for F6QSD6 as seed ortholog is 100%.
Bootstrap support for G3JFT4 as seed ortholog is 100%.

Group of orthologs #1855. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

F6QB35              	100.00%		G3JP37              	100.00%
Bootstrap support for F6QB35 as seed ortholog is 100%.
Bootstrap support for G3JP37 as seed ortholog is 100%.

Group of orthologs #1856. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

F6S2Y7              	100.00%		G3JRC1              	100.00%
Bootstrap support for F6S2Y7 as seed ortholog is 100%.
Bootstrap support for G3JRC1 as seed ortholog is 100%.

Group of orthologs #1857. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

H2XJJ6              	100.00%		G3J7S4              	100.00%
Bootstrap support for H2XJJ6 as seed ortholog is 100%.
Bootstrap support for G3J7S4 as seed ortholog is 100%.

Group of orthologs #1858. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

F6YQB2              	100.00%		G3JH80              	100.00%
Bootstrap support for F6YQB2 as seed ortholog is 100%.
Bootstrap support for G3JH80 as seed ortholog is 100%.

Group of orthologs #1859. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

F7AGK5              	100.00%		G3JDB3              	100.00%
Bootstrap support for F7AGK5 as seed ortholog is 100%.
Bootstrap support for G3JDB3 as seed ortholog is 100%.

Group of orthologs #1860. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

F6Z833              	100.00%		G3JQK9              	100.00%
Bootstrap support for F6Z833 as seed ortholog is 100%.
Bootstrap support for G3JQK9 as seed ortholog is 100%.

Group of orthologs #1861. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

Q8T885              	100.00%		G3JA60              	100.00%
Bootstrap support for Q8T885 as seed ortholog is 100%.
Bootstrap support for G3JA60 as seed ortholog is 100%.

Group of orthologs #1862. Best score 66 bits
Score difference with first non-orthologous sequence - C.intestinalis:66 C.militaris:66

H2Y2X6              	100.00%		G3JC77              	100.00%
Bootstrap support for H2Y2X6 as seed ortholog is 100%.
Bootstrap support for G3JC77 as seed ortholog is 100%.

Group of orthologs #1863. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:65

F6QR63              	100.00%		G3J6R8              	100.00%
Bootstrap support for F6QR63 as seed ortholog is 100%.
Bootstrap support for G3J6R8 as seed ortholog is 100%.

Group of orthologs #1864. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:65

F6TJA4              	100.00%		G3J985              	100.00%
Bootstrap support for F6TJA4 as seed ortholog is 100%.
Bootstrap support for G3J985 as seed ortholog is 100%.

Group of orthologs #1865. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:65

H2XTL8              	100.00%		G3J457              	100.00%
Bootstrap support for H2XTL8 as seed ortholog is 100%.
Bootstrap support for G3J457 as seed ortholog is 100%.

Group of orthologs #1866. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:65

H2XSZ6              	100.00%		G3JK43              	100.00%
Bootstrap support for H2XSZ6 as seed ortholog is 100%.
Bootstrap support for G3JK43 as seed ortholog is 100%.

Group of orthologs #1867. Best score 65 bits
Score difference with first non-orthologous sequence - C.intestinalis:65 C.militaris:65

H2XPM9              	100.00%		G3JRL1              	100.00%
Bootstrap support for H2XPM9 as seed ortholog is 100%.
Bootstrap support for G3JRL1 as seed ortholog is 100%.

Group of orthologs #1868. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.militaris:64

F6YFM8              	100.00%		G3JT68              	100.00%
                    	       		G3J791              	12.37%
                    	       		G3J9F3              	11.91%
                    	       		G3JUJ9              	10.87%
                    	       		G3JJD5              	10.40%
                    	       		G3JBJ2              	9.71%
                    	       		G3JLB2              	9.02%
                    	       		G3JCT9              	7.28%
Bootstrap support for F6YFM8 as seed ortholog is 100%.
Bootstrap support for G3JT68 as seed ortholog is 100%.

Group of orthologs #1869. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.militaris:64

F6R2I4              	100.00%		G3JS58              	100.00%
F6QPY3              	49.24%		G3JUG5              	7.93%
F6QQ72              	46.57%		
F6THS9              	45.87%		
F6WL94              	38.65%		
Bootstrap support for F6R2I4 as seed ortholog is 100%.
Bootstrap support for G3JS58 as seed ortholog is 100%.

Group of orthologs #1870. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.militaris:64

F6TXQ6              	100.00%		G3J2L0              	100.00%
F6V198              	36.75%		
Bootstrap support for F6TXQ6 as seed ortholog is 100%.
Bootstrap support for G3J2L0 as seed ortholog is 100%.

Group of orthologs #1871. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.militaris:64

H2XMF4              	100.00%		G3J4N2              	100.00%
                    	       		G3JEC3              	15.72%
Bootstrap support for H2XMF4 as seed ortholog is 100%.
Bootstrap support for G3J4N2 as seed ortholog is 100%.

Group of orthologs #1872. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.militaris:64

F7AEJ9              	100.00%		G3JIM4              	100.00%
Bootstrap support for F7AEJ9 as seed ortholog is 100%.
Bootstrap support for G3JIM4 as seed ortholog is 100%.

Group of orthologs #1873. Best score 64 bits
Score difference with first non-orthologous sequence - C.intestinalis:64 C.militaris:64

H2XYK0              	100.00%		G3J6I8              	100.00%
Bootstrap support for H2XYK0 as seed ortholog is 100%.
Bootstrap support for G3J6I8 as seed ortholog is 100%.

Group of orthologs #1874. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:63

F7ANS1              	100.00%		G3JU00              	100.00%
F6R6X6              	31.98%		G3JKG2              	49.24%
                    	       		G3JUH5              	28.83%
                    	       		G3J337              	26.60%
                    	       		G3JFA8              	25.38%
                    	       		G3JDV1              	8.32%
                    	       		G3JP72              	8.02%
Bootstrap support for F7ANS1 as seed ortholog is 100%.
Bootstrap support for G3JU00 as seed ortholog is 100%.

Group of orthologs #1875. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:63

F6WIJ0              	100.00%		G3J6P0              	100.00%
Bootstrap support for F6WIJ0 as seed ortholog is 100%.
Bootstrap support for G3J6P0 as seed ortholog is 100%.

Group of orthologs #1876. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:63

F6W881              	100.00%		G3JGL0              	100.00%
Bootstrap support for F6W881 as seed ortholog is 100%.
Bootstrap support for G3JGL0 as seed ortholog is 100%.

Group of orthologs #1877. Best score 63 bits
Score difference with first non-orthologous sequence - C.intestinalis:63 C.militaris:63

F7AF81              	100.00%		G3JL29              	100.00%
Bootstrap support for F7AF81 as seed ortholog is 100%.
Bootstrap support for G3JL29 as seed ortholog is 100%.

Group of orthologs #1878. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:62

F6WBC7              	100.00%		G3J7N4              	100.00%
Q70VZ3              	7.75%		
Bootstrap support for F6WBC7 as seed ortholog is 100%.
Bootstrap support for G3J7N4 as seed ortholog is 100%.

Group of orthologs #1879. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:62

F6WCM2              	100.00%		G3J3M5              	100.00%
Bootstrap support for F6WCM2 as seed ortholog is 100%.
Bootstrap support for G3J3M5 as seed ortholog is 100%.

Group of orthologs #1880. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:62

F6XZJ5              	100.00%		G3J525              	100.00%
Bootstrap support for F6XZJ5 as seed ortholog is 100%.
Bootstrap support for G3J525 as seed ortholog is 100%.

Group of orthologs #1881. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:62

F7BHW5              	100.00%		G3JGC6              	100.00%
Bootstrap support for F7BHW5 as seed ortholog is 100%.
Bootstrap support for G3JGC6 as seed ortholog is 100%.

Group of orthologs #1882. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:62

H2XL05              	100.00%		G3JIY8              	100.00%
Bootstrap support for H2XL05 as seed ortholog is 100%.
Bootstrap support for G3JIY8 as seed ortholog is 100%.

Group of orthologs #1883. Best score 62 bits
Score difference with first non-orthologous sequence - C.intestinalis:62 C.militaris:62

H2XQR9              	100.00%		G3JN67              	100.00%
Bootstrap support for H2XQR9 as seed ortholog is 100%.
Bootstrap support for G3JN67 as seed ortholog is 100%.

Group of orthologs #1884. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:61

F6V3K9              	100.00%		G3JQ54              	100.00%
F6Z630              	7.24%		
F7BP82              	5.60%		
Bootstrap support for F6V3K9 as seed ortholog is 100%.
Bootstrap support for G3JQ54 as seed ortholog is 100%.

Group of orthologs #1885. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:61

F6U3C1              	100.00%		G3JJ75              	100.00%
Bootstrap support for F6U3C1 as seed ortholog is 100%.
Bootstrap support for G3JJ75 as seed ortholog is 100%.

Group of orthologs #1886. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:61

F7ANT6              	100.00%		G3JGG3              	100.00%
Bootstrap support for F7ANT6 as seed ortholog is 100%.
Bootstrap support for G3JGG3 as seed ortholog is 100%.

Group of orthologs #1887. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:61

H2XN89              	100.00%		G3JC55              	100.00%
Bootstrap support for H2XN89 as seed ortholog is 100%.
Bootstrap support for G3JC55 as seed ortholog is 100%.

Group of orthologs #1888. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:61

H2XQF1              	100.00%		G3JC63              	100.00%
Bootstrap support for H2XQF1 as seed ortholog is 100%.
Bootstrap support for G3JC63 as seed ortholog is 100%.

Group of orthologs #1889. Best score 61 bits
Score difference with first non-orthologous sequence - C.intestinalis:61 C.militaris:61

F7BN93              	100.00%		G3JKJ4              	100.00%
Bootstrap support for F7BN93 as seed ortholog is 100%.
Bootstrap support for G3JKJ4 as seed ortholog is 100%.

Group of orthologs #1890. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

F7AQH5              	100.00%		G3JMQ7              	100.00%
                    	       		G3JM29              	6.24%
Bootstrap support for F7AQH5 as seed ortholog is 100%.
Bootstrap support for G3JMQ7 as seed ortholog is 100%.

Group of orthologs #1891. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

F6S0Y6              	100.00%		G3J8M6              	100.00%
Bootstrap support for F6S0Y6 as seed ortholog is 100%.
Bootstrap support for G3J8M6 as seed ortholog is 100%.

Group of orthologs #1892. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

H2XN49              	100.00%		G3J3H1              	100.00%
Bootstrap support for H2XN49 as seed ortholog is 100%.
Bootstrap support for G3J3H1 as seed ortholog is 100%.

Group of orthologs #1893. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

F7AGE4              	100.00%		G3JDP5              	100.00%
Bootstrap support for F7AGE4 as seed ortholog is 100%.
Bootstrap support for G3JDP5 as seed ortholog is 100%.

Group of orthologs #1894. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

F6V2H0              	100.00%		G3JTV8              	100.00%
Bootstrap support for F6V2H0 as seed ortholog is 100%.
Bootstrap support for G3JTV8 as seed ortholog is 100%.

Group of orthologs #1895. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

F7BNU5              	100.00%		G3JTH0              	100.00%
Bootstrap support for F7BNU5 as seed ortholog is 100%.
Bootstrap support for G3JTH0 as seed ortholog is 100%.

Group of orthologs #1896. Best score 60 bits
Score difference with first non-orthologous sequence - C.intestinalis:60 C.militaris:60

Q1RLI5              	100.00%		G3JAQ9              	100.00%
Bootstrap support for Q1RLI5 as seed ortholog is 100%.
Bootstrap support for G3JAQ9 as seed ortholog is 100%.

Group of orthologs #1897. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

F6QSJ0              	100.00%		G3JAV8              	100.00%
                    	       		G3J4B6              	48.31%
                    	       		G3JBA0              	30.45%
                    	       		G3JC37              	26.97%
                    	       		G3JBY7              	8.88%
Bootstrap support for F6QSJ0 as seed ortholog is 100%.
Bootstrap support for G3JAV8 as seed ortholog is 100%.

Group of orthologs #1898. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

H2XLT4              	100.00%		G3JET9              	100.00%
H2XJL5              	63.21%		
H2XQE2              	52.43%		
F7BND4              	5.12%		
Bootstrap support for H2XLT4 as seed ortholog is 100%.
Bootstrap support for G3JET9 as seed ortholog is 100%.

Group of orthologs #1899. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

F6ZV03              	100.00%		G3JSM0              	100.00%
F6ZXD5              	17.29%		
F7A961              	14.01%		
H2XYI5              	13.69%		
Bootstrap support for F6ZV03 as seed ortholog is 100%.
Bootstrap support for G3JSM0 as seed ortholog is 100%.

Group of orthologs #1900. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

F6U0I8              	100.00%		G3J4C1              	100.00%
F6QJQ8              	21.42%		
Bootstrap support for F6U0I8 as seed ortholog is 100%.
Bootstrap support for G3J4C1 as seed ortholog is 100%.

Group of orthologs #1901. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

F6SJY8              	100.00%		G3JAD7              	100.00%
F6VZA9              	51.93%		
Bootstrap support for F6SJY8 as seed ortholog is 100%.
Bootstrap support for G3JAD7 as seed ortholog is 100%.

Group of orthologs #1902. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:14

F6YUN5              	100.00%		G3J3V7              	100.00%
Bootstrap support for F6YUN5 as seed ortholog is 100%.
Bootstrap support for G3J3V7 as seed ortholog is 66%.
Alternative seed ortholog is G3JJ28 (14 bits away from this cluster)

Group of orthologs #1903. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:7

F6R4A6              	100.00%		G3JNA6              	100.00%
Bootstrap support for F6R4A6 as seed ortholog is 100%.
Bootstrap support for G3JNA6 as seed ortholog is 60%.
Alternative seed ortholog is G3J3B9 (7 bits away from this cluster)

Group of orthologs #1904. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

F6VR17              	100.00%		G3JNK5              	100.00%
Bootstrap support for F6VR17 as seed ortholog is 100%.
Bootstrap support for G3JNK5 as seed ortholog is 100%.

Group of orthologs #1905. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

H2XZ76              	100.00%		G3J2Q7              	100.00%
Bootstrap support for H2XZ76 as seed ortholog is 100%.
Bootstrap support for G3J2Q7 as seed ortholog is 100%.

Group of orthologs #1906. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

H2Y167              	100.00%		G3J7F5              	100.00%
Bootstrap support for H2Y167 as seed ortholog is 100%.
Bootstrap support for G3J7F5 as seed ortholog is 100%.

Group of orthologs #1907. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

Q3MQ22              	100.00%		G3J6X8              	100.00%
Bootstrap support for Q3MQ22 as seed ortholog is 100%.
Bootstrap support for G3J6X8 as seed ortholog is 100%.

Group of orthologs #1908. Best score 59 bits
Score difference with first non-orthologous sequence - C.intestinalis:59 C.militaris:59

H2XRD0              	100.00%		G3JKS1              	100.00%
Bootstrap support for H2XRD0 as seed ortholog is 100%.
Bootstrap support for G3JKS1 as seed ortholog is 100%.

Group of orthologs #1909. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.militaris:58

F6Q558              	100.00%		G3J2U5              	100.00%
                    	       		G3JQV2              	36.50%
Bootstrap support for F6Q558 as seed ortholog is 100%.
Bootstrap support for G3J2U5 as seed ortholog is 100%.

Group of orthologs #1910. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.militaris:58

F6YVL2              	100.00%		G3JCR3              	100.00%
F6V899              	5.15%		
Bootstrap support for F6YVL2 as seed ortholog is 100%.
Bootstrap support for G3JCR3 as seed ortholog is 100%.

Group of orthologs #1911. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.militaris:58

H2XW88              	100.00%		G3J3K3              	100.00%
F7AX27              	44.55%		
Bootstrap support for H2XW88 as seed ortholog is 100%.
Bootstrap support for G3J3K3 as seed ortholog is 100%.

Group of orthologs #1912. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.militaris:2

Q4H2J7              	100.00%		G3JEE4              	100.00%
Bootstrap support for Q4H2J7 as seed ortholog is 100%.
Bootstrap support for G3JEE4 as seed ortholog is 56%.
Alternative seed ortholog is G3JGI7 (2 bits away from this cluster)

Group of orthologs #1913. Best score 58 bits
Score difference with first non-orthologous sequence - C.intestinalis:58 C.militaris:58

Q4H3A1              	100.00%		G3JTI4              	100.00%
Bootstrap support for Q4H3A1 as seed ortholog is 100%.
Bootstrap support for G3JTI4 as seed ortholog is 100%.

Group of orthologs #1914. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:57

F6US70              	100.00%		G3JPG0              	100.00%
F6QH26              	11.40%		G3JF57              	6.11%
F6QD80              	10.75%		
F6UUD7              	10.22%		
F8WQ81              	7.73%		
F6UBE7              	7.47%		
F6SR80              	6.42%		
Bootstrap support for F6US70 as seed ortholog is 100%.
Bootstrap support for G3JPG0 as seed ortholog is 100%.

Group of orthologs #1915. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:14

F6RAJ1              	100.00%		G3JMU3              	100.00%
F7AE92              	100.00%		G3JAG2              	11.89%
F6Z8B6              	31.61%		
F6WRW7              	28.07%		
F7B3N6              	26.43%		
F6XUL4              	24.80%		
Bootstrap support for F6RAJ1 as seed ortholog is 100%.
Bootstrap support for F7AE92 as seed ortholog is 100%.
Bootstrap support for G3JMU3 as seed ortholog is 70%.
Alternative seed ortholog is G3JIR8 (14 bits away from this cluster)

Group of orthologs #1916. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:57

F6ZDN7              	100.00%		G3JP93              	100.00%
                    	       		G3JJR3              	27.47%
                    	       		G3JB68              	20.75%
                    	       		G3JFH9              	19.96%
                    	       		G3JT03              	19.66%
                    	       		G3JNM2              	17.19%
                    	       		G3J3P5              	11.96%
Bootstrap support for F6ZDN7 as seed ortholog is 100%.
Bootstrap support for G3JP93 as seed ortholog is 100%.

Group of orthologs #1917. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:57

F6PNT4              	100.00%		G3JS26              	100.00%
F6PNS0              	40.33%		
Bootstrap support for F6PNT4 as seed ortholog is 100%.
Bootstrap support for G3JS26 as seed ortholog is 100%.

Group of orthologs #1918. Best score 57 bits
Score difference with first non-orthologous sequence - C.intestinalis:57 C.militaris:57

F6XF81              	100.00%		G3JCH6              	100.00%
Bootstrap support for F6XF81 as seed ortholog is 100%.
Bootstrap support for G3JCH6 as seed ortholog is 100%.

Group of orthologs #1919. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:13 C.militaris:56

F7AHD2              	100.00%		G3J9L4              	100.00%
F7AHC2              	53.56%		
F6V9K6              	37.10%		
F6S277              	36.61%		
H2XQD9              	36.12%		
H2XLA5              	34.89%		
Bootstrap support for F7AHD2 as seed ortholog is 61%.
Alternative seed ortholog is F6X6U3 (13 bits away from this cluster)
Bootstrap support for G3J9L4 as seed ortholog is 100%.

Group of orthologs #1920. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:7

H2XY86              	100.00%		G3JAL4              	100.00%
H2XXC3              	16.94%		G3JQ89              	13.88%
H2XKL0              	15.47%		G3J790              	11.79%
                    	       		G3JQW8              	11.19%
Bootstrap support for H2XY86 as seed ortholog is 100%.
Bootstrap support for G3JAL4 as seed ortholog is 38%.
Alternative seed ortholog is G3J4G6 (7 bits away from this cluster)

Group of orthologs #1921. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:56

F6WUA7              	100.00%		G3JJ67              	100.00%
H2XRR7              	11.49%		
Bootstrap support for F6WUA7 as seed ortholog is 100%.
Bootstrap support for G3JJ67 as seed ortholog is 100%.

Group of orthologs #1922. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:56

F6PM15              	100.00%		G3JAF2              	100.00%
Bootstrap support for F6PM15 as seed ortholog is 100%.
Bootstrap support for G3JAF2 as seed ortholog is 100%.

Group of orthologs #1923. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:56

F6RM26              	100.00%		G3JBH4              	100.00%
Bootstrap support for F6RM26 as seed ortholog is 100%.
Bootstrap support for G3JBH4 as seed ortholog is 100%.

Group of orthologs #1924. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:56

F6QLU5              	100.00%		G3JJM6              	100.00%
Bootstrap support for F6QLU5 as seed ortholog is 100%.
Bootstrap support for G3JJM6 as seed ortholog is 100%.

Group of orthologs #1925. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:56

F6ZNA8              	100.00%		G3JTL2              	100.00%
Bootstrap support for F6ZNA8 as seed ortholog is 100%.
Bootstrap support for G3JTL2 as seed ortholog is 100%.

Group of orthologs #1926. Best score 56 bits
Score difference with first non-orthologous sequence - C.intestinalis:56 C.militaris:56

H2XTS0              	100.00%		G3JR08              	100.00%
Bootstrap support for H2XTS0 as seed ortholog is 100%.
Bootstrap support for G3JR08 as seed ortholog is 100%.

Group of orthologs #1927. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:55

F6VWV8              	100.00%		G3J9C7              	100.00%
F6W097              	24.63%		G3JLS1              	38.34%
                    	       		G3J6U5              	34.88%
                    	       		G3J479              	32.07%
                    	       		G3J4H3              	30.67%
                    	       		G3JGL2              	29.16%
                    	       		G3JHL5              	26.89%
                    	       		G3J7L5              	25.49%
                    	       		G3JJB1              	25.16%
                    	       		G3JT56              	23.65%
                    	       		G3J498              	23.54%
                    	       		G3JFB5              	23.22%
                    	       		G3J6D3              	22.14%
                    	       		G3JSU8              	21.71%
                    	       		G3J2X2              	20.73%
                    	       		G3JLA0              	19.98%
                    	       		G3JIT4              	18.68%
                    	       		G3JIS1              	15.55%
                    	       		G3JTB4              	14.04%
                    	       		G3JRZ0              	14.04%
                    	       		G3JIU5              	13.93%
                    	       		G3JNI7              	13.71%
                    	       		G3J9N6              	7.13%
Bootstrap support for F6VWV8 as seed ortholog is 100%.
Bootstrap support for G3J9C7 as seed ortholog is 100%.

Group of orthologs #1928. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:55

F6SYM5              	100.00%		G3J9U5              	100.00%
F6ZFZ3              	6.54%		
Bootstrap support for F6SYM5 as seed ortholog is 100%.
Bootstrap support for G3J9U5 as seed ortholog is 100%.

Group of orthologs #1929. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:55

F6V377              	100.00%		G3J5J5              	100.00%
Bootstrap support for F6V377 as seed ortholog is 100%.
Bootstrap support for G3J5J5 as seed ortholog is 100%.

Group of orthologs #1930. Best score 55 bits
Score difference with first non-orthologous sequence - C.intestinalis:55 C.militaris:55

H2Y058              	100.00%		G3JMB1              	100.00%
Bootstrap support for H2Y058 as seed ortholog is 100%.
Bootstrap support for G3JMB1 as seed ortholog is 100%.

Group of orthologs #1931. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:54

F6SYI7              	100.00%		G3JEK1              	100.00%
                    	       		G3J643              	27.72%
Bootstrap support for F6SYI7 as seed ortholog is 100%.
Bootstrap support for G3JEK1 as seed ortholog is 100%.

Group of orthologs #1932. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:54

F6XYG2              	100.00%		G3JEZ7              	100.00%
Bootstrap support for F6XYG2 as seed ortholog is 100%.
Bootstrap support for G3JEZ7 as seed ortholog is 100%.

Group of orthologs #1933. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:54

H2Y196              	100.00%		G3J6Q2              	100.00%
Bootstrap support for H2Y196 as seed ortholog is 100%.
Bootstrap support for G3J6Q2 as seed ortholog is 100%.

Group of orthologs #1934. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:54

F7ARW3              	100.00%		G3JRC4              	100.00%
Bootstrap support for F7ARW3 as seed ortholog is 100%.
Bootstrap support for G3JRC4 as seed ortholog is 100%.

Group of orthologs #1935. Best score 54 bits
Score difference with first non-orthologous sequence - C.intestinalis:54 C.militaris:54

H2XLY6              	100.00%		G3JSU2              	100.00%
Bootstrap support for H2XLY6 as seed ortholog is 100%.
Bootstrap support for G3JSU2 as seed ortholog is 100%.

Group of orthologs #1936. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:53

F6TJR3              	100.00%		G3JNU5              	100.00%
F7AV79              	38.85%		
F6V6C3              	22.96%		
Bootstrap support for F6TJR3 as seed ortholog is 100%.
Bootstrap support for G3JNU5 as seed ortholog is 100%.

Group of orthologs #1937. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:53

F6PWX0              	100.00%		G3J413              	100.00%
Bootstrap support for F6PWX0 as seed ortholog is 100%.
Bootstrap support for G3J413 as seed ortholog is 100%.

Group of orthologs #1938. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:53

F6QZE9              	100.00%		G3JHH8              	100.00%
Bootstrap support for F6QZE9 as seed ortholog is 100%.
Bootstrap support for G3JHH8 as seed ortholog is 100%.

Group of orthologs #1939. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:53

F6R982              	100.00%		G3JM77              	100.00%
Bootstrap support for F6R982 as seed ortholog is 100%.
Bootstrap support for G3JM77 as seed ortholog is 100%.

Group of orthologs #1940. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:53

F6WQS5              	100.00%		G3JPL2              	100.00%
Bootstrap support for F6WQS5 as seed ortholog is 100%.
Bootstrap support for G3JPL2 as seed ortholog is 100%.

Group of orthologs #1941. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:13 C.militaris:11

F6Z3A0              	100.00%		G3JTR0              	100.00%
Bootstrap support for F6Z3A0 as seed ortholog is 68%.
Alternative seed ortholog is F6QDH2 (13 bits away from this cluster)
Bootstrap support for G3JTR0 as seed ortholog is 63%.
Alternative seed ortholog is G3JUY0 (11 bits away from this cluster)

Group of orthologs #1942. Best score 53 bits
Score difference with first non-orthologous sequence - C.intestinalis:53 C.militaris:53

H2Y1S7              	100.00%		G3J7D9              	100.00%
Bootstrap support for H2Y1S7 as seed ortholog is 100%.
Bootstrap support for G3J7D9 as seed ortholog is 100%.

Group of orthologs #1943. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

F6SPV5              	100.00%		G3J4B8              	100.00%
                    	       		G3J4B7              	23.51%
Bootstrap support for F6SPV5 as seed ortholog is 100%.
Bootstrap support for G3J4B8 as seed ortholog is 100%.

Group of orthologs #1944. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

F6VE75              	100.00%		G3J5T5              	100.00%
Bootstrap support for F6VE75 as seed ortholog is 100%.
Bootstrap support for G3J5T5 as seed ortholog is 100%.

Group of orthologs #1945. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

F7ALL0              	100.00%		G3J7A6              	100.00%
Bootstrap support for F7ALL0 as seed ortholog is 100%.
Bootstrap support for G3J7A6 as seed ortholog is 100%.

Group of orthologs #1946. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

F6YCI4              	100.00%		G3JG26              	100.00%
Bootstrap support for F6YCI4 as seed ortholog is 100%.
Bootstrap support for G3JG26 as seed ortholog is 100%.

Group of orthologs #1947. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:12

H2XML4              	100.00%		G3J7I9              	100.00%
Bootstrap support for H2XML4 as seed ortholog is 100%.
Bootstrap support for G3J7I9 as seed ortholog is 64%.
Alternative seed ortholog is G3JPU7 (12 bits away from this cluster)

Group of orthologs #1948. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

F7ATY3              	100.00%		G3JFX8              	100.00%
Bootstrap support for F7ATY3 as seed ortholog is 100%.
Bootstrap support for G3JFX8 as seed ortholog is 100%.

Group of orthologs #1949. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

H2XYB2              	100.00%		G3J6B0              	100.00%
Bootstrap support for H2XYB2 as seed ortholog is 100%.
Bootstrap support for G3J6B0 as seed ortholog is 100%.

Group of orthologs #1950. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

H2XVJ4              	100.00%		G3JM67              	100.00%
Bootstrap support for H2XVJ4 as seed ortholog is 100%.
Bootstrap support for G3JM67 as seed ortholog is 100%.

Group of orthologs #1951. Best score 52 bits
Score difference with first non-orthologous sequence - C.intestinalis:52 C.militaris:52

H2XYX0              	100.00%		G3JMS4              	100.00%
Bootstrap support for H2XYX0 as seed ortholog is 100%.
Bootstrap support for G3JMS4 as seed ortholog is 100%.

Group of orthologs #1952. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.militaris:51

F6W5S5              	100.00%		G3JKI1              	100.00%
H2XJL0              	16.27%		G3JF43              	30.04%
H2XQG5              	12.60%		G3J4K3              	29.41%
                    	       		G3J4W4              	22.61%
                    	       		G3J6K4              	17.20%
Bootstrap support for F6W5S5 as seed ortholog is 100%.
Bootstrap support for G3JKI1 as seed ortholog is 100%.

Group of orthologs #1953. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.militaris:51

F6YHQ3              	100.00%		G3JDU4              	100.00%
Bootstrap support for F6YHQ3 as seed ortholog is 100%.
Bootstrap support for G3JDU4 as seed ortholog is 100%.

Group of orthologs #1954. Best score 51 bits
Score difference with first non-orthologous sequence - C.intestinalis:51 C.militaris:51

H2XY81              	100.00%		G3J787              	100.00%
Bootstrap support for H2XY81 as seed ortholog is 100%.
Bootstrap support for G3J787 as seed ortholog is 100%.

Group of orthologs #1955. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F6V5N5              	100.00%		G3J3H7              	100.00%
F6T0R8              	18.56%		
H2XX20              	9.28%		
Bootstrap support for F6V5N5 as seed ortholog is 100%.
Bootstrap support for G3J3H7 as seed ortholog is 100%.

Group of orthologs #1956. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F6ZVS4              	100.00%		G3JTI9              	100.00%
F6UWB9              	45.22%		
Bootstrap support for F6ZVS4 as seed ortholog is 100%.
Bootstrap support for G3JTI9 as seed ortholog is 100%.

Group of orthologs #1957. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F6QFG5              	100.00%		G3J6X3              	100.00%
Bootstrap support for F6QFG5 as seed ortholog is 100%.
Bootstrap support for G3J6X3 as seed ortholog is 100%.

Group of orthologs #1958. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F6QAE6              	100.00%		G3JGF1              	100.00%
Bootstrap support for F6QAE6 as seed ortholog is 100%.
Bootstrap support for G3JGF1 as seed ortholog is 100%.

Group of orthologs #1959. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F7AG13              	100.00%		G3JC16              	100.00%
Bootstrap support for F7AG13 as seed ortholog is 100%.
Bootstrap support for G3JC16 as seed ortholog is 100%.

Group of orthologs #1960. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F6V4B3              	100.00%		G3JS72              	100.00%
Bootstrap support for F6V4B3 as seed ortholog is 100%.
Bootstrap support for G3JS72 as seed ortholog is 100%.

Group of orthologs #1961. Best score 50 bits
Score difference with first non-orthologous sequence - C.intestinalis:50 C.militaris:50

F6VBR9              	100.00%		G3JU11              	100.00%
Bootstrap support for F6VBR9 as seed ortholog is 100%.
Bootstrap support for G3JU11 as seed ortholog is 100%.

Group of orthologs #1962. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.militaris:49

F6UCU4              	100.00%		G3JK68              	100.00%
                    	       		G3JSH1              	100.00%
Bootstrap support for F6UCU4 as seed ortholog is 100%.
Bootstrap support for G3JK68 as seed ortholog is 100%.
Bootstrap support for G3JSH1 as seed ortholog is 100%.

Group of orthologs #1963. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.militaris:49

F6ZFT6              	100.00%		G3J3Z5              	100.00%
Bootstrap support for F6ZFT6 as seed ortholog is 100%.
Bootstrap support for G3J3Z5 as seed ortholog is 100%.

Group of orthologs #1964. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.militaris:49

F6Y5E2              	100.00%		G3JEC8              	100.00%
Bootstrap support for F6Y5E2 as seed ortholog is 100%.
Bootstrap support for G3JEC8 as seed ortholog is 100%.

Group of orthologs #1965. Best score 49 bits
Score difference with first non-orthologous sequence - C.intestinalis:49 C.militaris:49

F6WKB8              	100.00%		G3JMS6              	100.00%
Bootstrap support for F6WKB8 as seed ortholog is 100%.
Bootstrap support for G3JMS6 as seed ortholog is 100%.

Group of orthologs #1966. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.militaris:48

F7BEL6              	100.00%		G3J7W7              	100.00%
Bootstrap support for F7BEL6 as seed ortholog is 100%.
Bootstrap support for G3J7W7 as seed ortholog is 100%.

Group of orthologs #1967. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.militaris:48

H2XRD8              	100.00%		G3J6V1              	100.00%
Bootstrap support for H2XRD8 as seed ortholog is 100%.
Bootstrap support for G3J6V1 as seed ortholog is 100%.

Group of orthologs #1968. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.militaris:48

Q4H376              	100.00%		G3J779              	100.00%
Bootstrap support for Q4H376 as seed ortholog is 100%.
Bootstrap support for G3J779 as seed ortholog is 100%.

Group of orthologs #1969. Best score 48 bits
Score difference with first non-orthologous sequence - C.intestinalis:48 C.militaris:48

Q1RLC9              	100.00%		G3JC94              	100.00%
Bootstrap support for Q1RLC9 as seed ortholog is 100%.
Bootstrap support for G3JC94 as seed ortholog is 100%.

Group of orthologs #1970. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:47

F6QGB8              	100.00%		G3JEJ9              	100.00%
Bootstrap support for F6QGB8 as seed ortholog is 100%.
Bootstrap support for G3JEJ9 as seed ortholog is 100%.

Group of orthologs #1971. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:47

F6WVC9              	100.00%		G3JQY7              	100.00%
Bootstrap support for F6WVC9 as seed ortholog is 100%.
Bootstrap support for G3JQY7 as seed ortholog is 100%.

Group of orthologs #1972. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:1 C.militaris:47

F7ALA2              	100.00%		G3JQX1              	100.00%
Bootstrap support for F7ALA2 as seed ortholog is 48%.
Alternative seed ortholog is F6W1C5 (1 bits away from this cluster)
Bootstrap support for G3JQX1 as seed ortholog is 100%.

Group of orthologs #1973. Best score 47 bits
Score difference with first non-orthologous sequence - C.intestinalis:47 C.militaris:47

H2XTG7              	100.00%		G3JR22              	100.00%
Bootstrap support for H2XTG7 as seed ortholog is 100%.
Bootstrap support for G3JR22 as seed ortholog is 100%.

Group of orthologs #1974. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 C.militaris:46

F6UFD0              	100.00%		G3J5V0              	100.00%
Bootstrap support for F6UFD0 as seed ortholog is 100%.
Bootstrap support for G3J5V0 as seed ortholog is 100%.

Group of orthologs #1975. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:6 C.militaris:5

F6SPI0              	100.00%		G3JUD1              	100.00%
Bootstrap support for F6SPI0 as seed ortholog is 60%.
Alternative seed ortholog is H2XL99 (6 bits away from this cluster)
Bootstrap support for G3JUD1 as seed ortholog is 56%.
Alternative seed ortholog is G3J4H9 (5 bits away from this cluster)

Group of orthologs #1976. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 C.militaris:46

H2Y0C0              	100.00%		G3JI43              	100.00%
Bootstrap support for H2Y0C0 as seed ortholog is 100%.
Bootstrap support for G3JI43 as seed ortholog is 100%.

Group of orthologs #1977. Best score 46 bits
Score difference with first non-orthologous sequence - C.intestinalis:46 C.militaris:46

H2XWM7              	100.00%		G3JM98              	100.00%
Bootstrap support for H2XWM7 as seed ortholog is 100%.
Bootstrap support for G3JM98 as seed ortholog is 100%.

Group of orthologs #1978. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:45

F6XL13              	100.00%		G3JCC4              	100.00%
F6SPL0              	76.34%		G3JPN7              	29.10%
F6UGD7              	27.52%		
Bootstrap support for F6XL13 as seed ortholog is 100%.
Bootstrap support for G3JCC4 as seed ortholog is 100%.

Group of orthologs #1979. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:45

F6VE17              	100.00%		G3JJ89              	100.00%
Bootstrap support for F6VE17 as seed ortholog is 100%.
Bootstrap support for G3JJ89 as seed ortholog is 100%.

Group of orthologs #1980. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:45

F7AF59              	100.00%		G3JTM5              	100.00%
Bootstrap support for F7AF59 as seed ortholog is 100%.
Bootstrap support for G3JTM5 as seed ortholog is 100%.

Group of orthologs #1981. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:45

H2XUR3              	100.00%		G3JFV7              	100.00%
Bootstrap support for H2XUR3 as seed ortholog is 100%.
Bootstrap support for G3JFV7 as seed ortholog is 100%.

Group of orthologs #1982. Best score 45 bits
Score difference with first non-orthologous sequence - C.intestinalis:45 C.militaris:45

H2XTI8              	100.00%		G3JHC4              	100.00%
Bootstrap support for H2XTI8 as seed ortholog is 100%.
Bootstrap support for G3JHC4 as seed ortholog is 100%.

Group of orthologs #1983. Best score 44 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 C.militaris:44

F6SZL1              	100.00%		G3JK69              	100.00%
F7AMF2              	66.28%		
Bootstrap support for F6SZL1 as seed ortholog is 100%.
Bootstrap support for G3JK69 as seed ortholog is 100%.

Group of orthologs #1984. Best score 44 bits
Score difference with first non-orthologous sequence - C.intestinalis:44 C.militaris:44

H2XV31              	100.00%		G3JK17              	100.00%
Bootstrap support for H2XV31 as seed ortholog is 100%.
Bootstrap support for G3JK17 as seed ortholog is 100%.

Group of orthologs #1985. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 C.militaris:43

F7BAU4              	100.00%		G3JE84              	100.00%
H2XT83              	12.59%		
Bootstrap support for F7BAU4 as seed ortholog is 100%.
Bootstrap support for G3JE84 as seed ortholog is 100%.

Group of orthologs #1986. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 C.militaris:43

H2XW11              	100.00%		G3J8H3              	100.00%
H2XTR6              	12.74%		
Bootstrap support for H2XW11 as seed ortholog is 100%.
Bootstrap support for G3J8H3 as seed ortholog is 100%.

Group of orthologs #1987. Best score 43 bits
Score difference with first non-orthologous sequence - C.intestinalis:43 C.militaris:43

H2XY24              	100.00%		G3JHU8              	100.00%
H2Y3A1              	12.92%		
Bootstrap support for H2XY24 as seed ortholog is 100%.
Bootstrap support for G3JHU8 as seed ortholog is 100%.

Group of orthologs #1988. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:42

H2XNU9              	100.00%		G3JGT4              	100.00%
H2XQ86              	29.30%		G3JQ78              	10.53%
H2XQD2              	11.91%		G3JTK5              	7.23%
H2XVI2              	11.91%		G3J3K4              	6.76%
H2XZI8              	10.96%		G3J6C8              	5.66%
F7AVL3              	6.62%		G3JP25              	5.35%
Bootstrap support for H2XNU9 as seed ortholog is 100%.
Bootstrap support for G3JGT4 as seed ortholog is 100%.

Group of orthologs #1989. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:42

F6PKC1              	100.00%		G3J4L8              	100.00%
H2XTA6              	42.33%		
H2XN36              	36.06%		
Bootstrap support for F6PKC1 as seed ortholog is 100%.
Bootstrap support for G3J4L8 as seed ortholog is 100%.

Group of orthologs #1990. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:42

H2XLA0              	100.00%		G3JIL6              	100.00%
H2Y1X0              	47.72%		
Bootstrap support for H2XLA0 as seed ortholog is 100%.
Bootstrap support for G3JIL6 as seed ortholog is 100%.

Group of orthologs #1991. Best score 42 bits
Score difference with first non-orthologous sequence - C.intestinalis:42 C.militaris:42

F6R815              	100.00%		G3J4C7              	100.00%
Bootstrap support for F6R815 as seed ortholog is 100%.
Bootstrap support for G3J4C7 as seed ortholog is 100%.