###################################
170 groups of orthologs
231 in-paralogs from C.immitis
178 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 874 bits
Score difference with first non-orthologous sequence - C.immitis:595 C.trachomatis:874

J3KBJ1              	100.00%		O84022              	100.00%
Bootstrap support for J3KBJ1 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 762 bits
Score difference with first non-orthologous sequence - C.immitis:762 C.trachomatis:762

J3K7H2              	100.00%		O84250              	100.00%
Bootstrap support for J3K7H2 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 691 bits
Score difference with first non-orthologous sequence - C.immitis:261 C.trachomatis:691

J3K5M3              	100.00%		O84348              	100.00%
Bootstrap support for J3K5M3 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #4. Best score 691 bits
Score difference with first non-orthologous sequence - C.immitis:18 C.trachomatis:169

J3KB40              	100.00%		O84115              	100.00%
Bootstrap support for J3KB40 as seed ortholog is 36%.
Alternative seed ortholog is J3KA13 (18 bits away from this cluster)
Bootstrap support for O84115 as seed ortholog is 99%.

Group of orthologs #5. Best score 678 bits
Score difference with first non-orthologous sequence - C.immitis:143 C.trachomatis:678

J3KDW8              	100.00%		P17821              	100.00%
Bootstrap support for J3KDW8 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #6. Best score 547 bits
Score difference with first non-orthologous sequence - C.immitis:463 C.trachomatis:363

J3K8C5              	100.00%		P0C0Z7              	100.00%
Bootstrap support for J3K8C5 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #7. Best score 519 bits
Score difference with first non-orthologous sequence - C.immitis:519 C.trachomatis:519

J3KJT8              	100.00%		O84057              	100.00%
Bootstrap support for J3KJT8 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #8. Best score 513 bits
Score difference with first non-orthologous sequence - C.immitis:380 C.trachomatis:513

J3K6Z7              	100.00%		O84067              	100.00%
Bootstrap support for J3K6Z7 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #9. Best score 510 bits
Score difference with first non-orthologous sequence - C.immitis:385 C.trachomatis:510

J3KL31              	100.00%		O84304              	100.00%
Bootstrap support for J3KL31 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #10. Best score 503 bits
Score difference with first non-orthologous sequence - C.immitis:503 C.trachomatis:503

J3KLD6              	100.00%		O84754              	100.00%
Bootstrap support for J3KLD6 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #11. Best score 503 bits
Score difference with first non-orthologous sequence - C.immitis:127 C.trachomatis:503

Q1DLM0              	100.00%		O84444              	100.00%
Bootstrap support for Q1DLM0 as seed ortholog is 98%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #12. Best score 486 bits
Score difference with first non-orthologous sequence - C.immitis:407 C.trachomatis:486

J3KM79              	100.00%		O84211              	100.00%
Bootstrap support for J3KM79 as seed ortholog is 100%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #13. Best score 478 bits
Score difference with first non-orthologous sequence - C.immitis:478 C.trachomatis:478

J3KD77              	100.00%		O84834              	100.00%
Bootstrap support for J3KD77 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #14. Best score 474 bits
Score difference with first non-orthologous sequence - C.immitis:474 C.trachomatis:474

J3K0G9              	100.00%		O84755              	100.00%
Bootstrap support for J3K0G9 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 100%.

Group of orthologs #15. Best score 472 bits
Score difference with first non-orthologous sequence - C.immitis:472 C.trachomatis:472

J3KIR3              	100.00%		O84066              	100.00%
Bootstrap support for J3KIR3 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #16. Best score 462 bits
Score difference with first non-orthologous sequence - C.immitis:462 C.trachomatis:462

J3KMA0              	100.00%		P0CD73              	100.00%
Bootstrap support for J3KMA0 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #17. Best score 456 bits
Score difference with first non-orthologous sequence - C.immitis:297 C.trachomatis:456

J3K207              	100.00%		P0CD71              	100.00%
Bootstrap support for J3K207 as seed ortholog is 100%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #18. Best score 442 bits
Score difference with first non-orthologous sequence - C.immitis:129 C.trachomatis:442

J3KKB5              	100.00%		O84585              	100.00%
Bootstrap support for J3KKB5 as seed ortholog is 99%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #19. Best score 435 bits
Score difference with first non-orthologous sequence - C.immitis:435 C.trachomatis:435

J3K7D6              	100.00%		O84863              	100.00%
Bootstrap support for J3K7D6 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #20. Best score 422 bits
Score difference with first non-orthologous sequence - C.immitis:20 C.trachomatis:422

J3KKB8              	100.00%		O84848              	100.00%
Bootstrap support for J3KKB8 as seed ortholog is 64%.
Alternative seed ortholog is J3KJS5 (20 bits away from this cluster)
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #21. Best score 415 bits
Score difference with first non-orthologous sequence - C.immitis:415 C.trachomatis:415

J3K6N0              	100.00%		Q59321              	100.00%
Bootstrap support for J3K6N0 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #22. Best score 384 bits
Score difference with first non-orthologous sequence - C.immitis:384 C.trachomatis:384

J0HGK5              	100.00%		O84172              	100.00%
Bootstrap support for J0HGK5 as seed ortholog is 100%.
Bootstrap support for O84172 as seed ortholog is 100%.

Group of orthologs #23. Best score 380 bits
Score difference with first non-orthologous sequence - C.immitis:233 C.trachomatis:380

J3KCY2              	100.00%		O84098              	100.00%
Bootstrap support for J3KCY2 as seed ortholog is 99%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #24. Best score 363 bits
Score difference with first non-orthologous sequence - C.immitis:363 C.trachomatis:363

Q1DTF9              	100.00%		P0CE13              	100.00%
Bootstrap support for Q1DTF9 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #25. Best score 357 bits
Score difference with first non-orthologous sequence - C.immitis:357 C.trachomatis:357

J3K8R9              	100.00%		O84310              	100.00%
Bootstrap support for J3K8R9 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #26. Best score 350 bits
Score difference with first non-orthologous sequence - C.immitis:350 C.trachomatis:350

J3K3V9              	100.00%		O84591              	100.00%
Bootstrap support for J3K3V9 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #27. Best score 340 bits
Score difference with first non-orthologous sequence - C.immitis:85 C.trachomatis:340

J3K9H6              	100.00%		O84126              	100.00%
Bootstrap support for J3K9H6 as seed ortholog is 98%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #28. Best score 330 bits
Score difference with first non-orthologous sequence - C.immitis:330 C.trachomatis:330

J3KHH8              	100.00%		O84101              	100.00%
Bootstrap support for J3KHH8 as seed ortholog is 100%.
Bootstrap support for O84101 as seed ortholog is 100%.

Group of orthologs #29. Best score 316 bits
Score difference with first non-orthologous sequence - C.immitis:158 C.trachomatis:316

J3K6S7              	100.00%		O84561              	100.00%
Bootstrap support for J3K6S7 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #30. Best score 313 bits
Score difference with first non-orthologous sequence - C.immitis:119 C.trachomatis:313

J3K671              	100.00%		O84248              	100.00%
Bootstrap support for J3K671 as seed ortholog is 99%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #31. Best score 312 bits
Score difference with first non-orthologous sequence - C.immitis:222 C.trachomatis:312

J3K4B3              	100.00%		O84831              	100.00%
Bootstrap support for J3K4B3 as seed ortholog is 99%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #32. Best score 312 bits
Score difference with first non-orthologous sequence - C.immitis:312 C.trachomatis:312

J3K7S6              	100.00%		O84829              	100.00%
Bootstrap support for J3K7S6 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #33. Best score 309 bits
Score difference with first non-orthologous sequence - C.immitis:309 C.trachomatis:309

I9XM91              	100.00%		P0CD78              	100.00%
Bootstrap support for I9XM91 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #34. Best score 302 bits
Score difference with first non-orthologous sequence - C.immitis:237 C.trachomatis:302

J3KJ50              	100.00%		O84786              	100.00%
Bootstrap support for J3KJ50 as seed ortholog is 100%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #35. Best score 299 bits
Score difference with first non-orthologous sequence - C.immitis:299 C.trachomatis:299

J3K3R0              	100.00%		O84823              	100.00%
Bootstrap support for J3K3R0 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #36. Best score 296 bits
Score difference with first non-orthologous sequence - C.immitis:296 C.trachomatis:296

J3KHV3              	100.00%		O84775              	100.00%
Bootstrap support for J3KHV3 as seed ortholog is 100%.
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #37. Best score 295 bits
Score difference with first non-orthologous sequence - C.immitis:295 C.trachomatis:295

J3K5D2              	100.00%		P0CE21              	100.00%
Bootstrap support for J3K5D2 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #38. Best score 289 bits
Score difference with first non-orthologous sequence - C.immitis:12 C.trachomatis:289

J3KL42              	100.00%		O84797              	100.00%
Bootstrap support for J3KL42 as seed ortholog is 73%.
Alternative seed ortholog is J3K1M8 (12 bits away from this cluster)
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #39. Best score 286 bits
Score difference with first non-orthologous sequence - C.immitis:186 C.trachomatis:286

J3K1N8              	100.00%		O84546              	100.00%
Bootstrap support for J3K1N8 as seed ortholog is 99%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #40. Best score 286 bits
Score difference with first non-orthologous sequence - C.immitis:168 C.trachomatis:286

J3K3K5              	100.00%		O84035              	100.00%
Bootstrap support for J3K3K5 as seed ortholog is 99%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #41. Best score 283 bits
Score difference with first non-orthologous sequence - C.immitis:283 C.trachomatis:283

J3KB55              	100.00%		O84316              	100.00%
J3K6Z9              	13.76%		
J3KBI0              	9.31%		
Bootstrap support for J3KB55 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #42. Best score 282 bits
Score difference with first non-orthologous sequence - C.immitis:282 C.trachomatis:282

J3K4I6              	100.00%		O84188              	100.00%
Bootstrap support for J3K4I6 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #43. Best score 269 bits
Score difference with first non-orthologous sequence - C.immitis:269 C.trachomatis:269

J3K393              	100.00%		O84451              	100.00%
Bootstrap support for J3K393 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #44. Best score 269 bits
Score difference with first non-orthologous sequence - C.immitis:269 C.trachomatis:269

J3K9D0              	100.00%		O84315              	100.00%
Bootstrap support for J3K9D0 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #45. Best score 266 bits
Score difference with first non-orthologous sequence - C.immitis:266 C.trachomatis:266

J3K6E3              	100.00%		O84828              	100.00%
Bootstrap support for J3K6E3 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #46. Best score 265 bits
Score difference with first non-orthologous sequence - C.immitis:137 C.trachomatis:265

J3K659              	100.00%		O84006              	100.00%
Bootstrap support for J3K659 as seed ortholog is 99%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #47. Best score 262 bits
Score difference with first non-orthologous sequence - C.immitis:262 C.trachomatis:262

J3K9A8              	100.00%		O84787              	100.00%
Bootstrap support for J3K9A8 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #48. Best score 262 bits
Score difference with first non-orthologous sequence - C.immitis:262 C.trachomatis:86

J3KL17              	100.00%		O84058              	100.00%
Bootstrap support for J3KL17 as seed ortholog is 100%.
Bootstrap support for O84058 as seed ortholog is 99%.

Group of orthologs #49. Best score 257 bits
Score difference with first non-orthologous sequence - C.immitis:257 C.trachomatis:257

J3KKJ1              	100.00%		O84439              	100.00%
J3KI59              	49.27%		
Bootstrap support for J3KKJ1 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #50. Best score 255 bits
Score difference with first non-orthologous sequence - C.immitis:255 C.trachomatis:255

J3K4Y0              	100.00%		P0CD72              	100.00%
Bootstrap support for J3K4Y0 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #51. Best score 254 bits
Score difference with first non-orthologous sequence - C.immitis:157 C.trachomatis:254

J3KDH1              	100.00%		O84352              	100.00%
J3K7X3              	10.72%		
Bootstrap support for J3KDH1 as seed ortholog is 100%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #52. Best score 245 bits
Score difference with first non-orthologous sequence - C.immitis:114 C.trachomatis:88

I9NS04              	100.00%		O84249              	100.00%
Bootstrap support for I9NS04 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 97%.

Group of orthologs #53. Best score 245 bits
Score difference with first non-orthologous sequence - C.immitis:245 C.trachomatis:245

I9XK40              	100.00%		P36431              	100.00%
Bootstrap support for I9XK40 as seed ortholog is 100%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #54. Best score 245 bits
Score difference with first non-orthologous sequence - C.immitis:181 C.trachomatis:245

J3KFE2              	100.00%		O84309              	100.00%
Bootstrap support for J3KFE2 as seed ortholog is 99%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #55. Best score 243 bits
Score difference with first non-orthologous sequence - C.immitis:243 C.trachomatis:243

J3KD22              	100.00%		O84373              	100.00%
Bootstrap support for J3KD22 as seed ortholog is 100%.
Bootstrap support for O84373 as seed ortholog is 100%.

Group of orthologs #56. Best score 241 bits
Score difference with first non-orthologous sequence - C.immitis:241 C.trachomatis:241

J3KJH2              	100.00%		O84642              	100.00%
J0HG28              	24.05%		
J3KIL9              	15.32%		
Bootstrap support for J3KJH2 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #57. Best score 232 bits
Score difference with first non-orthologous sequence - C.immitis:232 C.trachomatis:232

J3K4V5              	100.00%		P0CE09              	100.00%
J3K8D2              	100.00%		
J3KIN9              	6.22%		
Bootstrap support for J3K4V5 as seed ortholog is 100%.
Bootstrap support for J3K8D2 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #58. Best score 229 bits
Score difference with first non-orthologous sequence - C.immitis:154 C.trachomatis:229

I9NSN2              	100.00%		O84094              	100.00%
Bootstrap support for I9NSN2 as seed ortholog is 99%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #59. Best score 228 bits
Score difference with first non-orthologous sequence - C.immitis:228 C.trachomatis:228

J3K9X0              	100.00%		O84360              	100.00%
Bootstrap support for J3K9X0 as seed ortholog is 100%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #60. Best score 226 bits
Score difference with first non-orthologous sequence - C.immitis:145 C.trachomatis:226

J3KLI4              	100.00%		O84596              	100.00%
J3K974              	56.46%		
Bootstrap support for J3KLI4 as seed ortholog is 99%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #61. Best score 226 bits
Score difference with first non-orthologous sequence - C.immitis:226 C.trachomatis:226

J3KH31              	100.00%		O84562              	100.00%
Bootstrap support for J3KH31 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #62. Best score 223 bits
Score difference with first non-orthologous sequence - C.immitis:27 C.trachomatis:223

J3K5M4              	100.00%		O84345              	100.00%
Bootstrap support for J3K5M4 as seed ortholog is 74%.
Alternative seed ortholog is J3KEY5 (27 bits away from this cluster)
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #63. Best score 218 bits
Score difference with first non-orthologous sequence - C.immitis:218 C.trachomatis:218

J3K6P1              	100.00%		O84297              	100.00%
Bootstrap support for J3K6P1 as seed ortholog is 100%.
Bootstrap support for O84297 as seed ortholog is 100%.

Group of orthologs #64. Best score 217 bits
Score difference with first non-orthologous sequence - C.immitis:217 C.trachomatis:217

J3K8C0              	100.00%		O84711              	100.00%
Bootstrap support for J3K8C0 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #65. Best score 217 bits
Score difference with first non-orthologous sequence - C.immitis:217 C.trachomatis:86

J3KL04              	100.00%		O84026              	100.00%
Bootstrap support for J3KL04 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 98%.

Group of orthologs #66. Best score 214 bits
Score difference with first non-orthologous sequence - C.immitis:214 C.trachomatis:214

J3K3P2              	100.00%		O84638              	100.00%
Bootstrap support for J3K3P2 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #67. Best score 214 bits
Score difference with first non-orthologous sequence - C.immitis:164 C.trachomatis:214

J3K6I5              	100.00%		O84196              	100.00%
Bootstrap support for J3K6I5 as seed ortholog is 99%.
Bootstrap support for O84196 as seed ortholog is 100%.

Group of orthologs #68. Best score 212 bits
Score difference with first non-orthologous sequence - C.immitis:212 C.trachomatis:212

J3K8N6              	100.00%		O84812              	100.00%
Bootstrap support for J3K8N6 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #69. Best score 211 bits
Score difference with first non-orthologous sequence - C.immitis:211 C.trachomatis:211

J3K3Z2              	100.00%		O84698              	100.00%
Bootstrap support for J3K3Z2 as seed ortholog is 100%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #70. Best score 205 bits
Score difference with first non-orthologous sequence - C.immitis:205 C.trachomatis:205

J3KJT1              	100.00%		O84296              	100.00%
Bootstrap support for J3KJT1 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #71. Best score 202 bits
Score difference with first non-orthologous sequence - C.immitis:115 C.trachomatis:202

J3KJY5              	100.00%		O84530              	100.00%
Bootstrap support for J3KJY5 as seed ortholog is 99%.
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #72. Best score 197 bits
Score difference with first non-orthologous sequence - C.immitis:34 C.trachomatis:197

J3K8I5              	100.00%		O84734              	100.00%
Bootstrap support for J3K8I5 as seed ortholog is 77%.
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #73. Best score 192 bits
Score difference with first non-orthologous sequence - C.immitis:192 C.trachomatis:192

J3KLQ2              	100.00%		O84266              	100.00%
Bootstrap support for J3KLQ2 as seed ortholog is 100%.
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #74. Best score 191 bits
Score difference with first non-orthologous sequence - C.immitis:191 C.trachomatis:50

J3K4E9              	100.00%		O84712              	100.00%
Bootstrap support for J3K4E9 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 98%.

Group of orthologs #75. Best score 186 bits
Score difference with first non-orthologous sequence - C.immitis:186 C.trachomatis:186

J3K5C0              	100.00%		O84859              	100.00%
Bootstrap support for J3K5C0 as seed ortholog is 100%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #76. Best score 186 bits
Score difference with first non-orthologous sequence - C.immitis:186 C.trachomatis:186

J3KC75              	100.00%		O84007              	100.00%
Bootstrap support for J3KC75 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #77. Best score 183 bits
Score difference with first non-orthologous sequence - C.immitis:60 C.trachomatis:183

J0HHB9              	100.00%		O84732              	100.00%
J3KHE3              	5.54%		
Bootstrap support for J0HHB9 as seed ortholog is 89%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #78. Best score 182 bits
Score difference with first non-orthologous sequence - C.immitis:182 C.trachomatis:182

J3K1M7              	100.00%		O84065              	100.00%
Bootstrap support for J3K1M7 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #79. Best score 180 bits
Score difference with first non-orthologous sequence - C.immitis:180 C.trachomatis:74

J3K959              	100.00%		O84028              	100.00%
Bootstrap support for J3K959 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 97%.

Group of orthologs #80. Best score 178 bits
Score difference with first non-orthologous sequence - C.immitis:71 C.trachomatis:178

J3K2W8              	100.00%		O84332              	100.00%
Bootstrap support for J3K2W8 as seed ortholog is 98%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #81. Best score 178 bits
Score difference with first non-orthologous sequence - C.immitis:52 C.trachomatis:178

J3KLS7              	100.00%		O84247              	100.00%
Bootstrap support for J3KLS7 as seed ortholog is 92%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #82. Best score 176 bits
Score difference with first non-orthologous sequence - C.immitis:176 C.trachomatis:176

J3K8C3              	100.00%		O84874              	100.00%
Bootstrap support for J3K8C3 as seed ortholog is 100%.
Bootstrap support for O84874 as seed ortholog is 100%.

Group of orthologs #83. Best score 175 bits
Score difference with first non-orthologous sequence - C.immitis:40 C.trachomatis:175

J3K8C2              	100.00%		O84676              	100.00%
                    	       		O84722              	10.91%
Bootstrap support for J3K8C2 as seed ortholog is 84%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #84. Best score 174 bits
Score difference with first non-orthologous sequence - C.immitis:174 C.trachomatis:174

J0HI81              	100.00%		O84613              	100.00%
Bootstrap support for J0HI81 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #85. Best score 173 bits
Score difference with first non-orthologous sequence - C.immitis:173 C.trachomatis:173

J3KM71              	100.00%		O84704              	100.00%
Bootstrap support for J3KM71 as seed ortholog is 100%.
Bootstrap support for O84704 as seed ortholog is 100%.

Group of orthologs #86. Best score 172 bits
Score difference with first non-orthologous sequence - C.immitis:172 C.trachomatis:172

J3KFT5              	100.00%		O84460              	100.00%
Bootstrap support for J3KFT5 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #87. Best score 160 bits
Score difference with first non-orthologous sequence - C.immitis:26 C.trachomatis:160

I9NT56              	100.00%		P38004              	100.00%
J3KJP8              	29.01%		
Bootstrap support for I9NT56 as seed ortholog is 79%.
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #88. Best score 158 bits
Score difference with first non-orthologous sequence - C.immitis:158 C.trachomatis:158

J3K4X0              	100.00%		O84619              	100.00%
Bootstrap support for J3K4X0 as seed ortholog is 100%.
Bootstrap support for O84619 as seed ortholog is 100%.

Group of orthologs #89. Best score 151 bits
Score difference with first non-orthologous sequence - C.immitis:151 C.trachomatis:151

J3KLW3              	100.00%		P0CD79              	100.00%
Bootstrap support for J3KLW3 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #90. Best score 150 bits
Score difference with first non-orthologous sequence - C.immitis:150 C.trachomatis:150

J3KGX9              	100.00%		O84368              	100.00%
Bootstrap support for J3KGX9 as seed ortholog is 100%.
Bootstrap support for O84368 as seed ortholog is 100%.

Group of orthologs #91. Best score 149 bits
Score difference with first non-orthologous sequence - C.immitis:92 C.trachomatis:149

J3KM19              	100.00%		O84589              	100.00%
Bootstrap support for J3KM19 as seed ortholog is 98%.
Bootstrap support for O84589 as seed ortholog is 100%.

Group of orthologs #92. Best score 143 bits
Score difference with first non-orthologous sequence - C.immitis:143 C.trachomatis:143

J3K4S2              	100.00%		O84720              	100.00%
Bootstrap support for J3K4S2 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #93. Best score 141 bits
Score difference with first non-orthologous sequence - C.immitis:90 C.trachomatis:141

J3KHQ6              	100.00%		P66370              	100.00%
Bootstrap support for J3KHQ6 as seed ortholog is 99%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #94. Best score 140 bits
Score difference with first non-orthologous sequence - C.immitis:140 C.trachomatis:140

J3K7F3              	100.00%		O84736              	100.00%
Bootstrap support for J3K7F3 as seed ortholog is 100%.
Bootstrap support for O84736 as seed ortholog is 100%.

Group of orthologs #95. Best score 139 bits
Score difference with first non-orthologous sequence - C.immitis:139 C.trachomatis:139

J3K2V2              	100.00%		O84835              	100.00%
Bootstrap support for J3K2V2 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #96. Best score 137 bits
Score difference with first non-orthologous sequence - C.immitis:137 C.trachomatis:21

J3KG95              	100.00%		O84260              	100.00%
Bootstrap support for J3KG95 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 31%.
Alternative seed ortholog is O84693 (21 bits away from this cluster)

Group of orthologs #97. Best score 134 bits
Score difference with first non-orthologous sequence - C.immitis:134 C.trachomatis:134

I9XL94              	100.00%		O84752              	100.00%
Bootstrap support for I9XL94 as seed ortholog is 100%.
Bootstrap support for O84752 as seed ortholog is 100%.

Group of orthologs #98. Best score 133 bits
Score difference with first non-orthologous sequence - C.immitis:133 C.trachomatis:133

J3KJE1              	100.00%		O84123              	100.00%
Bootstrap support for J3KJE1 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #99. Best score 126 bits
Score difference with first non-orthologous sequence - C.immitis:126 C.trachomatis:126

J3K3M5              	100.00%		O84033              	100.00%
Bootstrap support for J3K3M5 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #100. Best score 123 bits
Score difference with first non-orthologous sequence - C.immitis:36 C.trachomatis:123

Q1E4I8              	100.00%		O84130              	100.00%
Bootstrap support for Q1E4I8 as seed ortholog is 86%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #101. Best score 119 bits
Score difference with first non-orthologous sequence - C.immitis:119 C.trachomatis:119

J3KFH6              	100.00%		O84843              	100.00%
Bootstrap support for J3KFH6 as seed ortholog is 100%.
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #102. Best score 117 bits
Score difference with first non-orthologous sequence - C.immitis:117 C.trachomatis:117

J3KJ61              	100.00%		O84782              	100.00%
Bootstrap support for J3KJ61 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #103. Best score 114 bits
Score difference with first non-orthologous sequence - C.immitis:114 C.trachomatis:114

J3KKC0              	100.00%		O84649              	100.00%
Bootstrap support for J3KKC0 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #104. Best score 113 bits
Score difference with first non-orthologous sequence - C.immitis:113 C.trachomatis:113

J3KDI0              	100.00%		O84533              	100.00%
Bootstrap support for J3KDI0 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #105. Best score 110 bits
Score difference with first non-orthologous sequence - C.immitis:110 C.trachomatis:110

J3KG81              	100.00%		O84864              	100.00%
Bootstrap support for J3KG81 as seed ortholog is 100%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #106. Best score 109 bits
Score difference with first non-orthologous sequence - C.immitis:109 C.trachomatis:109

J0HH91              	100.00%		O84463              	100.00%
Bootstrap support for J0HH91 as seed ortholog is 100%.
Bootstrap support for O84463 as seed ortholog is 100%.

Group of orthologs #107. Best score 107 bits
Score difference with first non-orthologous sequence - C.immitis:27 C.trachomatis:107

J3KIV6              	100.00%		O84578              	100.00%
Bootstrap support for J3KIV6 as seed ortholog is 73%.
Alternative seed ortholog is J3KB89 (27 bits away from this cluster)
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #108. Best score 106 bits
Score difference with first non-orthologous sequence - C.immitis:45 C.trachomatis:106

J3KKR4              	100.00%		O84212              	100.00%
Bootstrap support for J3KKR4 as seed ortholog is 87%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #109. Best score 105 bits
Score difference with first non-orthologous sequence - C.immitis:65 C.trachomatis:105

J3KCY4              	100.00%		O84687              	100.00%
Bootstrap support for J3KCY4 as seed ortholog is 97%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #110. Best score 102 bits
Score difference with first non-orthologous sequence - C.immitis:102 C.trachomatis:102

J3K932              	100.00%		O84320              	100.00%
Bootstrap support for J3K932 as seed ortholog is 100%.
Bootstrap support for O84320 as seed ortholog is 100%.

Group of orthologs #111. Best score 101 bits
Score difference with first non-orthologous sequence - C.immitis:101 C.trachomatis:101

J3KM55              	100.00%		O84771              	100.00%
Bootstrap support for J3KM55 as seed ortholog is 100%.
Bootstrap support for O84771 as seed ortholog is 100%.

Group of orthologs #112. Best score 100 bits
Score difference with first non-orthologous sequence - C.immitis:100 C.trachomatis:100

J3KBV7              	100.00%		O84410              	100.00%
Bootstrap support for J3KBV7 as seed ortholog is 100%.
Bootstrap support for O84410 as seed ortholog is 100%.

Group of orthologs #113. Best score 98 bits
Score difference with first non-orthologous sequence - C.immitis:19 C.trachomatis:98

J3KEI7              	100.00%		O84200              	100.00%
Bootstrap support for J3KEI7 as seed ortholog is 61%.
Alternative seed ortholog is Q1E406 (19 bits away from this cluster)
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #114. Best score 97 bits
Score difference with first non-orthologous sequence - C.immitis:97 C.trachomatis:97

I9NM18              	100.00%		O84492              	100.00%
Bootstrap support for I9NM18 as seed ortholog is 100%.
Bootstrap support for O84492 as seed ortholog is 100%.

Group of orthologs #115. Best score 97 bits
Score difference with first non-orthologous sequence - C.immitis:97 C.trachomatis:97

J3KCJ8              	100.00%		O84478              	100.00%
Bootstrap support for J3KCJ8 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #116. Best score 95 bits
Score difference with first non-orthologous sequence - C.immitis:95 C.trachomatis:95

J3KIB9              	100.00%		O84358              	100.00%
Bootstrap support for J3KIB9 as seed ortholog is 100%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #117. Best score 93 bits
Score difference with first non-orthologous sequence - C.immitis:93 C.trachomatis:93

J3KJ92              	100.00%		O84435              	100.00%
Bootstrap support for J3KJ92 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #118. Best score 92 bits
Score difference with first non-orthologous sequence - C.immitis:5 C.trachomatis:92

J3KD91              	100.00%		O84781              	100.00%
J3K492              	10.25%		
J3K5I2              	8.20%		
J3KBF6              	7.98%		
J3K5L4              	6.36%		
J3KH96              	5.83%		
J3K7Z7              	5.50%		
J3KJF9              	5.18%		
Bootstrap support for J3KD91 as seed ortholog is 56%.
Alternative seed ortholog is J3KAZ5 (5 bits away from this cluster)
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #119. Best score 89 bits
Score difference with first non-orthologous sequence - C.immitis:89 C.trachomatis:89

J3K764              	100.00%		O84595              	100.00%
Bootstrap support for J3K764 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #120. Best score 87 bits
Score difference with first non-orthologous sequence - C.immitis:87 C.trachomatis:87

J3K6B3              	100.00%		O84851              	100.00%
Bootstrap support for J3K6B3 as seed ortholog is 100%.
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #121. Best score 87 bits
Score difference with first non-orthologous sequence - C.immitis:33 C.trachomatis:87

J3KI00              	100.00%		P0CD81              	100.00%
Bootstrap support for J3KI00 as seed ortholog is 92%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #122. Best score 85 bits
Score difference with first non-orthologous sequence - C.immitis:85 C.trachomatis:85

J3K3G7              	100.00%		P0CD84              	100.00%
Bootstrap support for J3K3G7 as seed ortholog is 100%.
Bootstrap support for P0CD84 as seed ortholog is 100%.

Group of orthologs #123. Best score 85 bits
Score difference with first non-orthologous sequence - C.immitis:85 C.trachomatis:85

J3KJ65              	100.00%		O84779              	100.00%
Bootstrap support for J3KJ65 as seed ortholog is 100%.
Bootstrap support for O84779 as seed ortholog is 100%.

Group of orthologs #124. Best score 84 bits
Score difference with first non-orthologous sequence - C.immitis:84 C.trachomatis:84

J3K2G6              	100.00%		O84301              	100.00%
Bootstrap support for J3K2G6 as seed ortholog is 100%.
Bootstrap support for O84301 as seed ortholog is 100%.

Group of orthologs #125. Best score 84 bits
Score difference with first non-orthologous sequence - C.immitis:84 C.trachomatis:84

J3K2H4              	100.00%		O84321              	100.00%
Bootstrap support for J3K2H4 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #126. Best score 84 bits
Score difference with first non-orthologous sequence - C.immitis:84 C.trachomatis:84

J3K1R3              	100.00%		O84608              	100.00%
Bootstrap support for J3K1R3 as seed ortholog is 100%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #127. Best score 84 bits
Score difference with first non-orthologous sequence - C.immitis:84 C.trachomatis:84

J3K8J5              	100.00%		O84367              	100.00%
Bootstrap support for J3K8J5 as seed ortholog is 100%.
Bootstrap support for O84367 as seed ortholog is 100%.

Group of orthologs #128. Best score 84 bits
Score difference with first non-orthologous sequence - C.immitis:84 C.trachomatis:84

J3KDA6              	100.00%		O84599              	100.00%
Bootstrap support for J3KDA6 as seed ortholog is 100%.
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #129. Best score 83 bits
Score difference with first non-orthologous sequence - C.immitis:83 C.trachomatis:83

J3K152              	100.00%		O84719              	100.00%
Bootstrap support for J3K152 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #130. Best score 83 bits
Score difference with first non-orthologous sequence - C.immitis:83 C.trachomatis:83

J3KAW4              	100.00%		O84353              	100.00%
Bootstrap support for J3KAW4 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #131. Best score 82 bits
Score difference with first non-orthologous sequence - C.immitis:20 C.trachomatis:82

J3K0D6              	100.00%		P0CE04              	100.00%
Bootstrap support for J3K0D6 as seed ortholog is 84%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #132. Best score 82 bits
Score difference with first non-orthologous sequence - C.immitis:82 C.trachomatis:82

J3KES4              	100.00%		O84294              	100.00%
Bootstrap support for J3KES4 as seed ortholog is 100%.
Bootstrap support for O84294 as seed ortholog is 100%.

Group of orthologs #133. Best score 81 bits
Score difference with first non-orthologous sequence - C.immitis:81 C.trachomatis:81

J3K219              	100.00%		O84284              	100.00%
Bootstrap support for J3K219 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #134. Best score 81 bits
Score difference with first non-orthologous sequence - C.immitis:81 C.trachomatis:81

J3K2X5              	100.00%		O84658              	100.00%
Bootstrap support for J3K2X5 as seed ortholog is 100%.
Bootstrap support for O84658 as seed ortholog is 100%.

Group of orthologs #135. Best score 74 bits
Score difference with first non-orthologous sequence - C.immitis:28 C.trachomatis:74

J3KDP6              	100.00%		O84127              	100.00%
Bootstrap support for J3KDP6 as seed ortholog is 89%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #136. Best score 71 bits
Score difference with first non-orthologous sequence - C.immitis:71 C.trachomatis:71

J3KLS5              	100.00%		O84318              	100.00%
Bootstrap support for J3KLS5 as seed ortholog is 100%.
Bootstrap support for O84318 as seed ortholog is 100%.

Group of orthologs #137. Best score 70 bits
Score difference with first non-orthologous sequence - C.immitis:70 C.trachomatis:70

J3K5I5              	100.00%		P0A4C8              	100.00%
Bootstrap support for J3K5I5 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #138. Best score 68 bits
Score difference with first non-orthologous sequence - C.immitis:68 C.trachomatis:25

J3KL39              	100.00%		O84154              	100.00%
J3K620              	24.48%		O84204              	100.00%
                    	       		O84696              	25.05%
                    	       		O84695              	15.71%
                    	       		O84205              	13.38%
                    	       		O84660              	8.38%
                    	       		O84132              	6.49%
                    	       		O84421              	5.14%
Bootstrap support for J3KL39 as seed ortholog is 100%.
Bootstrap support for O84154 as seed ortholog is 82%.
Bootstrap support for O84204 as seed ortholog is 78%.

Group of orthologs #139. Best score 66 bits
Score difference with first non-orthologous sequence - C.immitis:66 C.trachomatis:66

J3KM61              	100.00%		O84338              	100.00%
J3K8M2              	18.74%		
J3K4F4              	13.54%		
Bootstrap support for J3KM61 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #140. Best score 66 bits
Score difference with first non-orthologous sequence - C.immitis:7 C.trachomatis:66

J3KC37              	100.00%		O84822              	100.00%
Bootstrap support for J3KC37 as seed ortholog is 53%.
Alternative seed ortholog is J3KBW1 (7 bits away from this cluster)
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #141. Best score 65 bits
Score difference with first non-orthologous sequence - C.immitis:65 C.trachomatis:65

J3KEV9              	100.00%		O84189              	100.00%
Bootstrap support for J3KEV9 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #142. Best score 65 bits
Score difference with first non-orthologous sequence - C.immitis:65 C.trachomatis:65

J3KKF5              	100.00%		O84792              	100.00%
Bootstrap support for J3KKF5 as seed ortholog is 100%.
Bootstrap support for O84792 as seed ortholog is 100%.

Group of orthologs #143. Best score 64 bits
Score difference with first non-orthologous sequence - C.immitis:64 C.trachomatis:64

J3K0L9              	100.00%		P0C0Z8              	100.00%
Bootstrap support for J3K0L9 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #144. Best score 64 bits
Score difference with first non-orthologous sequence - C.immitis:64 C.trachomatis:64

J3KDL7              	100.00%		O84081              	100.00%
Bootstrap support for J3KDL7 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #145. Best score 64 bits
Score difference with first non-orthologous sequence - C.immitis:64 C.trachomatis:64

J3KDP9              	100.00%		P0CE03              	100.00%
Bootstrap support for J3KDP9 as seed ortholog is 100%.
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #146. Best score 63 bits
Score difference with first non-orthologous sequence - C.immitis:63 C.trachomatis:63

J3KFP2              	100.00%		P0CD83              	100.00%
Bootstrap support for J3KFP2 as seed ortholog is 100%.
Bootstrap support for P0CD83 as seed ortholog is 100%.

Group of orthologs #147. Best score 62 bits
Score difference with first non-orthologous sequence - C.immitis:62 C.trachomatis:62

J3KK32              	100.00%		O84390              	100.00%
J3KJY0              	5.50%		
Bootstrap support for J3KK32 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #148. Best score 62 bits
Score difference with first non-orthologous sequence - C.immitis:62 C.trachomatis:62

J3KKB3              	100.00%		O84833              	100.00%
Bootstrap support for J3KKB3 as seed ortholog is 100%.
Bootstrap support for O84833 as seed ortholog is 100%.

Group of orthologs #149. Best score 61 bits
Score difference with first non-orthologous sequence - C.immitis:61 C.trachomatis:61

J3K2P5              	100.00%		O84532              	100.00%
Bootstrap support for J3K2P5 as seed ortholog is 100%.
Bootstrap support for O84532 as seed ortholog is 100%.

Group of orthologs #150. Best score 60 bits
Score difference with first non-orthologous sequence - C.immitis:9 C.trachomatis:60

J3K7G3              	100.00%		O84218              	100.00%
J3K2C0              	34.59%		
J3K9B5              	33.18%		
J3KIQ4              	32.99%		
I9NTJ5              	32.42%		
J3KAP6              	30.72%		
J3K470              	29.11%		
J3KI26              	27.13%		
J3K109              	26.09%		
J3KGI9              	25.71%		
J3KFV8              	24.76%		
J0HDT6              	18.15%		
J3KB50              	12.85%		
Bootstrap support for J3K7G3 as seed ortholog is 62%.
Alternative seed ortholog is J3KH24 (9 bits away from this cluster)
Bootstrap support for O84218 as seed ortholog is 100%.

Group of orthologs #151. Best score 60 bits
Score difference with first non-orthologous sequence - C.immitis:60 C.trachomatis:60

J3KIM5              	100.00%		O84750              	100.00%
Bootstrap support for J3KIM5 as seed ortholog is 100%.
Bootstrap support for O84750 as seed ortholog is 100%.

Group of orthologs #152. Best score 58 bits
Score difference with first non-orthologous sequence - C.immitis:58 C.trachomatis:58

J3KDP7              	100.00%		O84128              	100.00%
Bootstrap support for J3KDP7 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #153. Best score 57 bits
Score difference with first non-orthologous sequence - C.immitis:57 C.trachomatis:57

J3KHH3              	100.00%		O84547              	100.00%
Bootstrap support for J3KHH3 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #154. Best score 56 bits
Score difference with first non-orthologous sequence - C.immitis:56 C.trachomatis:56

P0CL20              	100.00%		O84366              	100.00%
J3K9V7              	22.87%		
Bootstrap support for P0CL20 as seed ortholog is 100%.
Bootstrap support for O84366 as seed ortholog is 100%.

Group of orthologs #155. Best score 56 bits
Score difference with first non-orthologous sequence - C.immitis:6 C.trachomatis:56

J3K2D7              	100.00%		P66480              	100.00%
Bootstrap support for J3K2D7 as seed ortholog is 63%.
Alternative seed ortholog is J3KL90 (6 bits away from this cluster)
Bootstrap support for P66480 as seed ortholog is 100%.

Group of orthologs #156. Best score 56 bits
Score difference with first non-orthologous sequence - C.immitis:56 C.trachomatis:56

J3KCR6              	100.00%		O84527              	100.00%
Bootstrap support for J3KCR6 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #157. Best score 55 bits
Score difference with first non-orthologous sequence - C.immitis:55 C.trachomatis:55

J3KFH5              	100.00%		P36424              	100.00%
Bootstrap support for J3KFH5 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #158. Best score 54 bits
Score difference with first non-orthologous sequence - C.immitis:54 C.trachomatis:54

J3K6P4              	100.00%		P0CE02              	100.00%
Bootstrap support for J3K6P4 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #159. Best score 54 bits
Score difference with first non-orthologous sequence - C.immitis:54 C.trachomatis:54

J3KDI3              	100.00%		O84221              	100.00%
Bootstrap support for J3KDI3 as seed ortholog is 100%.
Bootstrap support for O84221 as seed ortholog is 100%.

Group of orthologs #160. Best score 52 bits
Score difference with first non-orthologous sequence - C.immitis:52 C.trachomatis:52

J3K208              	100.00%		O84840              	100.00%
Bootstrap support for J3K208 as seed ortholog is 100%.
Bootstrap support for O84840 as seed ortholog is 100%.

Group of orthologs #161. Best score 51 bits
Score difference with first non-orthologous sequence - C.immitis:51 C.trachomatis:51

J3K8J2              	100.00%		O84611              	100.00%
Bootstrap support for J3K8J2 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #162. Best score 50 bits
Score difference with first non-orthologous sequence - C.immitis:50 C.trachomatis:50

J3KM33              	100.00%		O84381              	100.00%
J3K6J5              	49.58%		
Bootstrap support for J3KM33 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #163. Best score 50 bits
Score difference with first non-orthologous sequence - C.immitis:50 C.trachomatis:50

J3K8H3              	100.00%		O84299              	100.00%
Bootstrap support for J3K8H3 as seed ortholog is 100%.
Bootstrap support for O84299 as seed ortholog is 100%.

Group of orthologs #164. Best score 50 bits
Score difference with first non-orthologous sequence - C.immitis:50 C.trachomatis:50

J3KLC5              	100.00%		O84684              	100.00%
Bootstrap support for J3KLC5 as seed ortholog is 100%.
Bootstrap support for O84684 as seed ortholog is 100%.

Group of orthologs #165. Best score 49 bits
Score difference with first non-orthologous sequence - C.immitis:49 C.trachomatis:49

J3K2H7              	100.00%		O84548              	100.00%
J3K8N5              	53.99%		
J3KJX1              	35.45%		
J0HDU4              	29.31%		
J3K7U9              	23.92%		
J3K1C7              	23.71%		
J3KEE9              	23.60%		
J3K7M1              	22.84%		
J3KA51              	22.74%		
J3KJD4              	22.20%		
J3K0U0              	17.56%		
J3KLF7              	17.56%		
I9NLP7              	16.92%		
J3KJ44              	15.95%		
J3K5L5              	15.73%		
J0HGN5              	15.62%		
J3K9V5              	15.52%		
J3K028              	14.98%		
J3KI62              	11.96%		
J3K920              	11.42%		
J3K4A6              	10.13%		
J3KCM7              	9.70%		
J3KI16              	9.38%		
J3K2B2              	7.65%		
J3K1Y7              	6.36%		
Bootstrap support for J3K2H7 as seed ortholog is 100%.
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #166. Best score 48 bits
Score difference with first non-orthologous sequence - C.immitis:48 C.trachomatis:48

I9NN69              	100.00%		P0CD80              	100.00%
J3K1W4              	38.04%		
Bootstrap support for I9NN69 as seed ortholog is 100%.
Bootstrap support for P0CD80 as seed ortholog is 100%.

Group of orthologs #167. Best score 48 bits
Score difference with first non-orthologous sequence - C.immitis:48 C.trachomatis:48

J3KM65              	100.00%		O84027              	100.00%
Bootstrap support for J3KM65 as seed ortholog is 100%.
Bootstrap support for O84027 as seed ortholog is 100%.

Group of orthologs #168. Best score 41 bits
Score difference with first non-orthologous sequence - C.immitis:41 C.trachomatis:41

I9NT75              	100.00%		P0CE06              	100.00%
Bootstrap support for I9NT75 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #169. Best score 41 bits
Score difference with first non-orthologous sequence - C.immitis:41 C.trachomatis:41

J3KJ62              	100.00%		O84806              	100.00%
Bootstrap support for J3KJ62 as seed ortholog is 100%.
Bootstrap support for O84806 as seed ortholog is 100%.

Group of orthologs #170. Best score 41 bits
Score difference with first non-orthologous sequence - C.immitis:41 C.trachomatis:41

J3KLZ8              	100.00%		O84032              	100.00%
Bootstrap support for J3KLZ8 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.