###################################
185 groups of orthologs
200 in-paralogs from C.hominis
226 in-paralogs from P.kodakaraensis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 596 bits
Score difference with first non-orthologous sequence - C.hominis:178 P.kodakaraensis:596

Q5CKA3              	100.00%		Q5JE98              	100.00%
                    	       		Q9V2X2              	54.16%
Bootstrap support for Q5CKA3 as seed ortholog is 98%.
Bootstrap support for Q5JE98 as seed ortholog is 100%.

Group of orthologs #2. Best score 577 bits
Score difference with first non-orthologous sequence - C.hominis:522 P.kodakaraensis:577

Q5CJ77              	100.00%		Q5JIR2              	100.00%
Bootstrap support for Q5CJ77 as seed ortholog is 100%.
Bootstrap support for Q5JIR2 as seed ortholog is 100%.

Group of orthologs #3. Best score 524 bits
Score difference with first non-orthologous sequence - C.hominis:422 P.kodakaraensis:524

Q5CH42              	100.00%		Q5JDX6              	100.00%
Bootstrap support for Q5CH42 as seed ortholog is 100%.
Bootstrap support for Q5JDX6 as seed ortholog is 100%.

Group of orthologs #4. Best score 459 bits
Score difference with first non-orthologous sequence - C.hominis:459 P.kodakaraensis:459

Q5CN90              	100.00%		Q5JGF1              	100.00%
Bootstrap support for Q5CN90 as seed ortholog is 100%.
Bootstrap support for Q5JGF1 as seed ortholog is 100%.

Group of orthologs #5. Best score 456 bits
Score difference with first non-orthologous sequence - C.hominis:456 P.kodakaraensis:456

Q5CHT5              	100.00%		Q5JFZ4              	100.00%
Bootstrap support for Q5CHT5 as seed ortholog is 100%.
Bootstrap support for Q5JFZ4 as seed ortholog is 100%.

Group of orthologs #6. Best score 423 bits
Score difference with first non-orthologous sequence - C.hominis:39 P.kodakaraensis:423

Q5CNH7              	100.00%		Q5JE32              	100.00%
Bootstrap support for Q5CNH7 as seed ortholog is 70%.
Alternative seed ortholog is Q5CN11 (39 bits away from this cluster)
Bootstrap support for Q5JE32 as seed ortholog is 100%.

Group of orthologs #7. Best score 419 bits
Score difference with first non-orthologous sequence - C.hominis:419 P.kodakaraensis:261

Q5CDU1              	100.00%		Q9YGB0              	100.00%
Bootstrap support for Q5CDU1 as seed ortholog is 100%.
Bootstrap support for Q9YGB0 as seed ortholog is 100%.

Group of orthologs #8. Best score 419 bits
Score difference with first non-orthologous sequence - C.hominis:419 P.kodakaraensis:419

Q5CEK3              	100.00%		Q5JJ31              	100.00%
Bootstrap support for Q5CEK3 as seed ortholog is 100%.
Bootstrap support for Q5JJ31 as seed ortholog is 100%.

Group of orthologs #9. Best score 406 bits
Score difference with first non-orthologous sequence - C.hominis:406 P.kodakaraensis:406

Q5CEQ9              	100.00%		Q5JIR3              	100.00%
Bootstrap support for Q5CEQ9 as seed ortholog is 100%.
Bootstrap support for Q5JIR3 as seed ortholog is 100%.

Group of orthologs #10. Best score 388 bits
Score difference with first non-orthologous sequence - C.hominis:22 P.kodakaraensis:388

Q5CEP2              	100.00%		P61111              	100.00%
                    	       		Q52500              	71.17%
Bootstrap support for Q5CEP2 as seed ortholog is 69%.
Alternative seed ortholog is Q5CN42 (22 bits away from this cluster)
Bootstrap support for P61111 as seed ortholog is 100%.

Group of orthologs #11. Best score 384 bits
Score difference with first non-orthologous sequence - C.hominis:384 P.kodakaraensis:295

Q5CJV0              	100.00%		Q5JH71              	100.00%
Bootstrap support for Q5CJV0 as seed ortholog is 100%.
Bootstrap support for Q5JH71 as seed ortholog is 100%.

Group of orthologs #12. Best score 380 bits
Score difference with first non-orthologous sequence - C.hominis:7 P.kodakaraensis:285

Q5CNS5              	100.00%		Q5JJA2              	100.00%
Bootstrap support for Q5CNS5 as seed ortholog is 50%.
Alternative seed ortholog is Q5CGG0 (7 bits away from this cluster)
Bootstrap support for Q5JJA2 as seed ortholog is 100%.

Group of orthologs #13. Best score 372 bits
Score difference with first non-orthologous sequence - C.hominis:23 P.kodakaraensis:372

Q5CKF2              	100.00%		Q5JGE5              	100.00%
Bootstrap support for Q5CKF2 as seed ortholog is 72%.
Alternative seed ortholog is Q5CNU7 (23 bits away from this cluster)
Bootstrap support for Q5JGE5 as seed ortholog is 100%.

Group of orthologs #14. Best score 357 bits
Score difference with first non-orthologous sequence - C.hominis:357 P.kodakaraensis:357

Q5CJ18              	100.00%		Q5JDL3              	100.00%
Bootstrap support for Q5CJ18 as seed ortholog is 100%.
Bootstrap support for Q5JDL3 as seed ortholog is 100%.

Group of orthologs #15. Best score 350 bits
Score difference with first non-orthologous sequence - C.hominis:1 P.kodakaraensis:224

Q5CI76              	100.00%		Q5JHS5              	100.00%
Bootstrap support for Q5CI76 as seed ortholog is 48%.
Alternative seed ortholog is Q5CLA4 (1 bits away from this cluster)
Bootstrap support for Q5JHS5 as seed ortholog is 100%.

Group of orthologs #16. Best score 345 bits
Score difference with first non-orthologous sequence - C.hominis:238 P.kodakaraensis:345

Q5CMC8              	100.00%		Q5JFZ3              	100.00%
Bootstrap support for Q5CMC8 as seed ortholog is 100%.
Bootstrap support for Q5JFZ3 as seed ortholog is 100%.

Group of orthologs #17. Best score 324 bits
Score difference with first non-orthologous sequence - C.hominis:324 P.kodakaraensis:257

Q5CES8              	100.00%		Q5JID8              	100.00%
Bootstrap support for Q5CES8 as seed ortholog is 100%.
Bootstrap support for Q5JID8 as seed ortholog is 100%.

Group of orthologs #18. Best score 317 bits
Score difference with first non-orthologous sequence - C.hominis:317 P.kodakaraensis:317

Q5CP31              	100.00%		Q5JEP3              	100.00%
Bootstrap support for Q5CP31 as seed ortholog is 100%.
Bootstrap support for Q5JEP3 as seed ortholog is 100%.

Group of orthologs #19. Best score 311 bits
Score difference with first non-orthologous sequence - C.hominis:311 P.kodakaraensis:311

Q5CMN2              	100.00%		Q5JD45              	100.00%
Bootstrap support for Q5CMN2 as seed ortholog is 100%.
Bootstrap support for Q5JD45 as seed ortholog is 100%.

Group of orthologs #20. Best score 301 bits
Score difference with first non-orthologous sequence - C.hominis:301 P.kodakaraensis:301

Q5CFF5              	100.00%		Q5JJH1              	100.00%
Bootstrap support for Q5CFF5 as seed ortholog is 100%.
Bootstrap support for Q5JJH1 as seed ortholog is 100%.

Group of orthologs #21. Best score 300 bits
Score difference with first non-orthologous sequence - C.hominis:300 P.kodakaraensis:300

Q5CIF5              	100.00%		Q5JE75              	100.00%
Bootstrap support for Q5CIF5 as seed ortholog is 100%.
Bootstrap support for Q5JE75 as seed ortholog is 100%.

Group of orthologs #22. Best score 300 bits
Score difference with first non-orthologous sequence - C.hominis:300 P.kodakaraensis:300

Q5CHV3              	100.00%		Q76I93              	100.00%
Bootstrap support for Q5CHV3 as seed ortholog is 100%.
Bootstrap support for Q76I93 as seed ortholog is 100%.

Group of orthologs #23. Best score 297 bits
Score difference with first non-orthologous sequence - C.hominis:14 P.kodakaraensis:297

Q5CKU7              	100.00%		Q5JIT1              	100.00%
                    	       		Q5JGW1              	5.44%
                    	       		Q5JEJ0              	5.34%
Bootstrap support for Q5CKU7 as seed ortholog is 46%.
Alternative seed ortholog is Q5CJF4 (14 bits away from this cluster)
Bootstrap support for Q5JIT1 as seed ortholog is 100%.

Group of orthologs #24. Best score 274 bits
Score difference with first non-orthologous sequence - C.hominis:274 P.kodakaraensis:274

Q5CJN3              	100.00%		Q5JGN7              	100.00%
Bootstrap support for Q5CJN3 as seed ortholog is 100%.
Bootstrap support for Q5JGN7 as seed ortholog is 100%.

Group of orthologs #25. Best score 268 bits
Score difference with first non-orthologous sequence - C.hominis:268 P.kodakaraensis:177

Q5CGE0              	100.00%		Q5JET4              	100.00%
Q5CIR3              	8.41%		
Bootstrap support for Q5CGE0 as seed ortholog is 100%.
Bootstrap support for Q5JET4 as seed ortholog is 100%.

Group of orthologs #26. Best score 267 bits
Score difference with first non-orthologous sequence - C.hominis:267 P.kodakaraensis:267

Q5CI16              	100.00%		Q5JED2              	100.00%
Bootstrap support for Q5CI16 as seed ortholog is 100%.
Bootstrap support for Q5JED2 as seed ortholog is 100%.

Group of orthologs #27. Best score 261 bits
Score difference with first non-orthologous sequence - C.hominis:261 P.kodakaraensis:261

Q5CMV4              	100.00%		Q5JHX1              	100.00%
Bootstrap support for Q5CMV4 as seed ortholog is 100%.
Bootstrap support for Q5JHX1 as seed ortholog is 100%.

Group of orthologs #28. Best score 260 bits
Score difference with first non-orthologous sequence - C.hominis:260 P.kodakaraensis:260

Q5CGL8              	100.00%		Q5JJE8              	100.00%
Bootstrap support for Q5CGL8 as seed ortholog is 100%.
Bootstrap support for Q5JJE8 as seed ortholog is 100%.

Group of orthologs #29. Best score 253 bits
Score difference with first non-orthologous sequence - C.hominis:253 P.kodakaraensis:253

Q5CG95              	100.00%		Q5JGK6              	100.00%
Bootstrap support for Q5CG95 as seed ortholog is 100%.
Bootstrap support for Q5JGK6 as seed ortholog is 100%.

Group of orthologs #30. Best score 251 bits
Score difference with first non-orthologous sequence - C.hominis:26 P.kodakaraensis:251

Q5CKH9              	100.00%		Q5JFZ6              	100.00%
Q5CMG6              	29.60%		
Q5CML5              	5.96%		
Bootstrap support for Q5CKH9 as seed ortholog is 77%.
Bootstrap support for Q5JFZ6 as seed ortholog is 100%.

Group of orthologs #31. Best score 243 bits
Score difference with first non-orthologous sequence - C.hominis:243 P.kodakaraensis:243

Q5CFZ1              	100.00%		Q5JD92              	100.00%
Bootstrap support for Q5CFZ1 as seed ortholog is 100%.
Bootstrap support for Q5JD92 as seed ortholog is 100%.

Group of orthologs #32. Best score 237 bits
Score difference with first non-orthologous sequence - C.hominis:237 P.kodakaraensis:237

Q5CGC0              	100.00%		Q5JH16              	100.00%
Bootstrap support for Q5CGC0 as seed ortholog is 100%.
Bootstrap support for Q5JH16 as seed ortholog is 100%.

Group of orthologs #33. Best score 237 bits
Score difference with first non-orthologous sequence - C.hominis:237 P.kodakaraensis:237

Q5CMW6              	100.00%		Q76KA8              	100.00%
Bootstrap support for Q5CMW6 as seed ortholog is 100%.
Bootstrap support for Q76KA8 as seed ortholog is 100%.

Group of orthologs #34. Best score 235 bits
Score difference with first non-orthologous sequence - C.hominis:135 P.kodakaraensis:235

Q5CK04              	100.00%		Q5JHC1              	100.00%
                    	       		Q52428              	7.05%
Bootstrap support for Q5CK04 as seed ortholog is 99%.
Bootstrap support for Q5JHC1 as seed ortholog is 100%.

Group of orthologs #35. Best score 228 bits
Score difference with first non-orthologous sequence - C.hominis:110 P.kodakaraensis:228

Q5CP48              	100.00%		Q5JJC8              	100.00%
Bootstrap support for Q5CP48 as seed ortholog is 99%.
Bootstrap support for Q5JJC8 as seed ortholog is 100%.

Group of orthologs #36. Best score 227 bits
Score difference with first non-orthologous sequence - C.hominis:227 P.kodakaraensis:227

Q5CG47              	100.00%		Q8NKR7              	100.00%
Bootstrap support for Q5CG47 as seed ortholog is 100%.
Bootstrap support for Q8NKR7 as seed ortholog is 100%.

Group of orthologs #37. Best score 227 bits
Score difference with first non-orthologous sequence - C.hominis:227 P.kodakaraensis:227

Q5CN97              	100.00%		Q5JDJ5              	100.00%
Bootstrap support for Q5CN97 as seed ortholog is 100%.
Bootstrap support for Q5JDJ5 as seed ortholog is 100%.

Group of orthologs #38. Best score 220 bits
Score difference with first non-orthologous sequence - C.hominis:158 P.kodakaraensis:220

Q5CHG8              	100.00%		Q5JGQ7              	100.00%
Q5CFE3              	36.03%		
Bootstrap support for Q5CHG8 as seed ortholog is 99%.
Bootstrap support for Q5JGQ7 as seed ortholog is 100%.

Group of orthologs #39. Best score 219 bits
Score difference with first non-orthologous sequence - C.hominis:219 P.kodakaraensis:219

Q5CG04              	100.00%		Q5JFN1              	100.00%
Bootstrap support for Q5CG04 as seed ortholog is 100%.
Bootstrap support for Q5JFN1 as seed ortholog is 100%.

Group of orthologs #40. Best score 218 bits
Score difference with first non-orthologous sequence - C.hominis:218 P.kodakaraensis:218

Q5CJR9              	100.00%		Q5JDH2              	100.00%
Bootstrap support for Q5CJR9 as seed ortholog is 100%.
Bootstrap support for Q5JDH2 as seed ortholog is 100%.

Group of orthologs #41. Best score 213 bits
Score difference with first non-orthologous sequence - C.hominis:213 P.kodakaraensis:213

Q5CMS2              	100.00%		Q5JIP3              	100.00%
Bootstrap support for Q5CMS2 as seed ortholog is 100%.
Bootstrap support for Q5JIP3 as seed ortholog is 100%.

Group of orthologs #42. Best score 211 bits
Score difference with first non-orthologous sequence - C.hominis:211 P.kodakaraensis:211

Q5CMR3              	100.00%		O08467              	100.00%
Bootstrap support for Q5CMR3 as seed ortholog is 100%.
Bootstrap support for O08467 as seed ortholog is 100%.

Group of orthologs #43. Best score 211 bits
Score difference with first non-orthologous sequence - C.hominis:211 P.kodakaraensis:211

Q5CNW6              	100.00%		Q76KA7              	100.00%
Bootstrap support for Q5CNW6 as seed ortholog is 100%.
Bootstrap support for Q76KA7 as seed ortholog is 100%.

Group of orthologs #44. Best score 209 bits
Score difference with first non-orthologous sequence - C.hominis:209 P.kodakaraensis:209

Q5CI59              	100.00%		Q5JIM2              	100.00%
Bootstrap support for Q5CI59 as seed ortholog is 100%.
Bootstrap support for Q5JIM2 as seed ortholog is 100%.

Group of orthologs #45. Best score 203 bits
Score difference with first non-orthologous sequence - C.hominis:203 P.kodakaraensis:203

Q5CLX8              	100.00%		Q5JF63              	100.00%
Bootstrap support for Q5CLX8 as seed ortholog is 100%.
Bootstrap support for Q5JF63 as seed ortholog is 100%.

Group of orthologs #46. Best score 198 bits
Score difference with first non-orthologous sequence - C.hominis:198 P.kodakaraensis:198

Q5CJW8              	100.00%		Q5JHC6              	100.00%
Bootstrap support for Q5CJW8 as seed ortholog is 100%.
Bootstrap support for Q5JHC6 as seed ortholog is 100%.

Group of orthologs #47. Best score 196 bits
Score difference with first non-orthologous sequence - C.hominis:11 P.kodakaraensis:196

Q5CEI7              	100.00%		Q5JIU9              	100.00%
Bootstrap support for Q5CEI7 as seed ortholog is 67%.
Alternative seed ortholog is Q5CL26 (11 bits away from this cluster)
Bootstrap support for Q5JIU9 as seed ortholog is 100%.

Group of orthologs #48. Best score 194 bits
Score difference with first non-orthologous sequence - C.hominis:114 P.kodakaraensis:51

Q5CLD2              	100.00%		Q5JI15              	100.00%
Bootstrap support for Q5CLD2 as seed ortholog is 99%.
Bootstrap support for Q5JI15 as seed ortholog is 93%.

Group of orthologs #49. Best score 194 bits
Score difference with first non-orthologous sequence - C.hominis:194 P.kodakaraensis:194

Q5CNR4              	100.00%		Q5JH24              	100.00%
Bootstrap support for Q5CNR4 as seed ortholog is 100%.
Bootstrap support for Q5JH24 as seed ortholog is 100%.

Group of orthologs #50. Best score 193 bits
Score difference with first non-orthologous sequence - C.hominis:193 P.kodakaraensis:193

Q5CIU1              	100.00%		Q5JFN0              	100.00%
Q5CPC7              	9.13%		
Bootstrap support for Q5CIU1 as seed ortholog is 100%.
Bootstrap support for Q5JFN0 as seed ortholog is 100%.

Group of orthologs #51. Best score 192 bits
Score difference with first non-orthologous sequence - C.hominis:192 P.kodakaraensis:192

Q5CIK6              	100.00%		Q5JIG7              	100.00%
Bootstrap support for Q5CIK6 as seed ortholog is 100%.
Bootstrap support for Q5JIG7 as seed ortholog is 100%.

Group of orthologs #52. Best score 190 bits
Score difference with first non-orthologous sequence - C.hominis:190 P.kodakaraensis:190

Q5CEV5              	100.00%		Q5JFE7              	100.00%
Bootstrap support for Q5CEV5 as seed ortholog is 100%.
Bootstrap support for Q5JFE7 as seed ortholog is 100%.

Group of orthologs #53. Best score 190 bits
Score difference with first non-orthologous sequence - C.hominis:190 P.kodakaraensis:190

Q5CJR7              	100.00%		Q5JGN0              	100.00%
Bootstrap support for Q5CJR7 as seed ortholog is 100%.
Bootstrap support for Q5JGN0 as seed ortholog is 100%.

Group of orthologs #54. Best score 179 bits
Score difference with first non-orthologous sequence - C.hominis:179 P.kodakaraensis:179

Q5CGE3              	100.00%		Q5JIL7              	100.00%
Bootstrap support for Q5CGE3 as seed ortholog is 100%.
Bootstrap support for Q5JIL7 as seed ortholog is 100%.

Group of orthologs #55. Best score 176 bits
Score difference with first non-orthologous sequence - C.hominis:56 P.kodakaraensis:176

Q5CNZ6              	100.00%		Q5JDF4              	100.00%
Q5CKM3              	12.82%		
Bootstrap support for Q5CNZ6 as seed ortholog is 91%.
Bootstrap support for Q5JDF4 as seed ortholog is 100%.

Group of orthologs #56. Best score 168 bits
Score difference with first non-orthologous sequence - C.hominis:168 P.kodakaraensis:168

Q5CNV3              	100.00%		Q5JDZ7              	100.00%
Bootstrap support for Q5CNV3 as seed ortholog is 100%.
Bootstrap support for Q5JDZ7 as seed ortholog is 100%.

Group of orthologs #57. Best score 167 bits
Score difference with first non-orthologous sequence - C.hominis:167 P.kodakaraensis:167

Q5CHE4              	100.00%		Q5JEW3              	100.00%
Bootstrap support for Q5CHE4 as seed ortholog is 100%.
Bootstrap support for Q5JEW3 as seed ortholog is 100%.

Group of orthologs #58. Best score 166 bits
Score difference with first non-orthologous sequence - C.hominis:166 P.kodakaraensis:166

Q5CH92              	100.00%		Q5JH43              	100.00%
Bootstrap support for Q5CH92 as seed ortholog is 100%.
Bootstrap support for Q5JH43 as seed ortholog is 100%.

Group of orthologs #59. Best score 162 bits
Score difference with first non-orthologous sequence - C.hominis:52 P.kodakaraensis:162

Q5CGM0              	100.00%		Q5JGD1              	100.00%
Bootstrap support for Q5CGM0 as seed ortholog is 91%.
Bootstrap support for Q5JGD1 as seed ortholog is 100%.

Group of orthologs #60. Best score 157 bits
Score difference with first non-orthologous sequence - C.hominis:157 P.kodakaraensis:157

Q5CGJ7              	100.00%		Q5JH68              	100.00%
Bootstrap support for Q5CGJ7 as seed ortholog is 100%.
Bootstrap support for Q5JH68 as seed ortholog is 100%.

Group of orthologs #61. Best score 156 bits
Score difference with first non-orthologous sequence - C.hominis:53 P.kodakaraensis:156

Q5CEB9              	100.00%		Q5JEM6              	100.00%
Bootstrap support for Q5CEB9 as seed ortholog is 94%.
Bootstrap support for Q5JEM6 as seed ortholog is 100%.

Group of orthologs #62. Best score 155 bits
Score difference with first non-orthologous sequence - C.hominis:155 P.kodakaraensis:155

Q5CEQ2              	100.00%		Q5JDV8              	100.00%
                    	       		Q5JIM8              	12.25%
Bootstrap support for Q5CEQ2 as seed ortholog is 100%.
Bootstrap support for Q5JDV8 as seed ortholog is 100%.

Group of orthologs #63. Best score 154 bits
Score difference with first non-orthologous sequence - C.hominis:154 P.kodakaraensis:154

Q5CKR8              	100.00%		Q5JGJ4              	100.00%
Bootstrap support for Q5CKR8 as seed ortholog is 100%.
Bootstrap support for Q5JGJ4 as seed ortholog is 100%.

Group of orthologs #64. Best score 151 bits
Score difference with first non-orthologous sequence - C.hominis:151 P.kodakaraensis:151

Q5CGB0              	100.00%		Q5JDJ0              	100.00%
Bootstrap support for Q5CGB0 as seed ortholog is 100%.
Bootstrap support for Q5JDJ0 as seed ortholog is 100%.

Group of orthologs #65. Best score 151 bits
Score difference with first non-orthologous sequence - C.hominis:151 P.kodakaraensis:151

Q5CGV2              	100.00%		Q5JFK3              	100.00%
Bootstrap support for Q5CGV2 as seed ortholog is 100%.
Bootstrap support for Q5JFK3 as seed ortholog is 100%.

Group of orthologs #66. Best score 148 bits
Score difference with first non-orthologous sequence - C.hominis:148 P.kodakaraensis:148

Q5CLC3              	100.00%		Q5JJG1              	100.00%
Bootstrap support for Q5CLC3 as seed ortholog is 100%.
Bootstrap support for Q5JJG1 as seed ortholog is 100%.

Group of orthologs #67. Best score 146 bits
Score difference with first non-orthologous sequence - C.hominis:146 P.kodakaraensis:146

Q5CGN0              	100.00%		Q5JIB9              	100.00%
Bootstrap support for Q5CGN0 as seed ortholog is 100%.
Bootstrap support for Q5JIB9 as seed ortholog is 100%.

Group of orthologs #68. Best score 146 bits
Score difference with first non-orthologous sequence - C.hominis:61 P.kodakaraensis:37

Q5CHS1              	100.00%		Q5JI97              	100.00%
Bootstrap support for Q5CHS1 as seed ortholog is 96%.
Bootstrap support for Q5JI97 as seed ortholog is 79%.

Group of orthologs #69. Best score 145 bits
Score difference with first non-orthologous sequence - C.hominis:145 P.kodakaraensis:27

Q5CH26              	100.00%		Q5JDD8              	100.00%
Bootstrap support for Q5CH26 as seed ortholog is 100%.
Bootstrap support for Q5JDD8 as seed ortholog is 78%.

Group of orthologs #70. Best score 142 bits
Score difference with first non-orthologous sequence - C.hominis:142 P.kodakaraensis:142

Q5CFC7              	100.00%		Q5JE04              	100.00%
Bootstrap support for Q5CFC7 as seed ortholog is 100%.
Bootstrap support for Q5JE04 as seed ortholog is 100%.

Group of orthologs #71. Best score 142 bits
Score difference with first non-orthologous sequence - C.hominis:142 P.kodakaraensis:142

Q5CKN1              	100.00%		Q5JDH5              	100.00%
Bootstrap support for Q5CKN1 as seed ortholog is 100%.
Bootstrap support for Q5JDH5 as seed ortholog is 100%.

Group of orthologs #72. Best score 139 bits
Score difference with first non-orthologous sequence - C.hominis:139 P.kodakaraensis:139

Q5CEK7              	100.00%		Q5JGH7              	100.00%
Bootstrap support for Q5CEK7 as seed ortholog is 100%.
Bootstrap support for Q5JGH7 as seed ortholog is 100%.

Group of orthologs #73. Best score 139 bits
Score difference with first non-orthologous sequence - C.hominis:139 P.kodakaraensis:139

Q5CM00              	100.00%		Q5JGR7              	100.00%
Bootstrap support for Q5CM00 as seed ortholog is 100%.
Bootstrap support for Q5JGR7 as seed ortholog is 100%.

Group of orthologs #74. Best score 138 bits
Score difference with first non-orthologous sequence - C.hominis:46 P.kodakaraensis:138

Q5CM80              	100.00%		Q5JF06              	100.00%
Bootstrap support for Q5CM80 as seed ortholog is 89%.
Bootstrap support for Q5JF06 as seed ortholog is 100%.

Group of orthologs #75. Best score 138 bits
Score difference with first non-orthologous sequence - C.hominis:138 P.kodakaraensis:138

Q5CMS5              	100.00%		Q5JIA4              	100.00%
Bootstrap support for Q5CMS5 as seed ortholog is 100%.
Bootstrap support for Q5JIA4 as seed ortholog is 100%.

Group of orthologs #76. Best score 136 bits
Score difference with first non-orthologous sequence - C.hominis:136 P.kodakaraensis:136

Q5CMZ4              	100.00%		Q5JH36              	100.00%
Bootstrap support for Q5CMZ4 as seed ortholog is 100%.
Bootstrap support for Q5JH36 as seed ortholog is 100%.

Group of orthologs #77. Best score 134 bits
Score difference with first non-orthologous sequence - C.hominis:134 P.kodakaraensis:66

Q5CKC5              	100.00%		Q5JI45              	100.00%
                    	       		Q5JGT2              	37.16%
Bootstrap support for Q5CKC5 as seed ortholog is 100%.
Bootstrap support for Q5JI45 as seed ortholog is 94%.

Group of orthologs #78. Best score 133 bits
Score difference with first non-orthologous sequence - C.hominis:133 P.kodakaraensis:133

Q5CMK4              	100.00%		Q5JJB1              	100.00%
Bootstrap support for Q5CMK4 as seed ortholog is 100%.
Bootstrap support for Q5JJB1 as seed ortholog is 100%.

Group of orthologs #79. Best score 132 bits
Score difference with first non-orthologous sequence - C.hominis:132 P.kodakaraensis:132

Q5CM34              	100.00%		Q5JH96              	100.00%
Bootstrap support for Q5CM34 as seed ortholog is 100%.
Bootstrap support for Q5JH96 as seed ortholog is 100%.

Group of orthologs #80. Best score 131 bits
Score difference with first non-orthologous sequence - C.hominis:77 P.kodakaraensis:131

Q5CMD4              	100.00%		Q5JH35              	100.00%
Bootstrap support for Q5CMD4 as seed ortholog is 99%.
Bootstrap support for Q5JH35 as seed ortholog is 100%.

Group of orthologs #81. Best score 129 bits
Score difference with first non-orthologous sequence - C.hominis:129 P.kodakaraensis:129

Q5CLD8              	100.00%		Q5JDH3              	100.00%
Bootstrap support for Q5CLD8 as seed ortholog is 100%.
Bootstrap support for Q5JDH3 as seed ortholog is 100%.

Group of orthologs #82. Best score 127 bits
Score difference with first non-orthologous sequence - C.hominis:82 P.kodakaraensis:127

Q5CNK9              	100.00%		Q5JEX2              	100.00%
Bootstrap support for Q5CNK9 as seed ortholog is 99%.
Bootstrap support for Q5JEX2 as seed ortholog is 100%.

Group of orthologs #83. Best score 126 bits
Score difference with first non-orthologous sequence - C.hominis:126 P.kodakaraensis:126

Q5CMB2              	100.00%		Q5JJF3              	100.00%
Bootstrap support for Q5CMB2 as seed ortholog is 100%.
Bootstrap support for Q5JJF3 as seed ortholog is 100%.

Group of orthologs #84. Best score 124 bits
Score difference with first non-orthologous sequence - C.hominis:124 P.kodakaraensis:124

Q5CHK2              	100.00%		Q5JEY0              	100.00%
Bootstrap support for Q5CHK2 as seed ortholog is 100%.
Bootstrap support for Q5JEY0 as seed ortholog is 100%.

Group of orthologs #85. Best score 121 bits
Score difference with first non-orthologous sequence - C.hominis:12 P.kodakaraensis:121

Q5CKS5              	100.00%		Q5JIE4              	100.00%
Bootstrap support for Q5CKS5 as seed ortholog is 63%.
Alternative seed ortholog is Q5CLB1 (12 bits away from this cluster)
Bootstrap support for Q5JIE4 as seed ortholog is 100%.

Group of orthologs #86. Best score 121 bits
Score difference with first non-orthologous sequence - C.hominis:121 P.kodakaraensis:121

Q5CKY0              	100.00%		Q5JJF1              	100.00%
Bootstrap support for Q5CKY0 as seed ortholog is 100%.
Bootstrap support for Q5JJF1 as seed ortholog is 100%.

Group of orthologs #87. Best score 118 bits
Score difference with first non-orthologous sequence - C.hominis:118 P.kodakaraensis:118

Q5CGE4              	100.00%		Q5JJF8              	100.00%
Bootstrap support for Q5CGE4 as seed ortholog is 100%.
Bootstrap support for Q5JJF8 as seed ortholog is 100%.

Group of orthologs #88. Best score 117 bits
Score difference with first non-orthologous sequence - C.hominis:117 P.kodakaraensis:117

Q5CFN6              	100.00%		Q5JDI6              	100.00%
Bootstrap support for Q5CFN6 as seed ortholog is 100%.
Bootstrap support for Q5JDI6 as seed ortholog is 100%.

Group of orthologs #89. Best score 116 bits
Score difference with first non-orthologous sequence - C.hominis:116 P.kodakaraensis:116

Q5CIZ9              	100.00%		Q5JGI1              	100.00%
Bootstrap support for Q5CIZ9 as seed ortholog is 100%.
Bootstrap support for Q5JGI1 as seed ortholog is 100%.

Group of orthologs #90. Best score 116 bits
Score difference with first non-orthologous sequence - C.hominis:116 P.kodakaraensis:116

Q5CP73              	100.00%		Q5JGT4              	100.00%
Bootstrap support for Q5CP73 as seed ortholog is 100%.
Bootstrap support for Q5JGT4 as seed ortholog is 100%.

Group of orthologs #91. Best score 116 bits
Score difference with first non-orthologous sequence - C.hominis:36 P.kodakaraensis:116

Q5CP64              	100.00%		Q5JIJ0              	100.00%
Bootstrap support for Q5CP64 as seed ortholog is 83%.
Bootstrap support for Q5JIJ0 as seed ortholog is 100%.

Group of orthologs #92. Best score 115 bits
Score difference with first non-orthologous sequence - C.hominis:115 P.kodakaraensis:115

Q5CP89              	100.00%		Q5JIB3              	100.00%
Bootstrap support for Q5CP89 as seed ortholog is 100%.
Bootstrap support for Q5JIB3 as seed ortholog is 100%.

Group of orthologs #93. Best score 114 bits
Score difference with first non-orthologous sequence - C.hominis:114 P.kodakaraensis:114

Q5CGJ0              	100.00%		Q5JJG3              	100.00%
Bootstrap support for Q5CGJ0 as seed ortholog is 100%.
Bootstrap support for Q5JJG3 as seed ortholog is 100%.

Group of orthologs #94. Best score 113 bits
Score difference with first non-orthologous sequence - C.hominis:9 P.kodakaraensis:113

Q5CEW7              	100.00%		Q5JDJ9              	100.00%
                    	       		Q5JHL8              	20.36%
Bootstrap support for Q5CEW7 as seed ortholog is 63%.
Alternative seed ortholog is Q5CKZ0 (9 bits away from this cluster)
Bootstrap support for Q5JDJ9 as seed ortholog is 100%.

Group of orthologs #95. Best score 110 bits
Score difference with first non-orthologous sequence - C.hominis:110 P.kodakaraensis:110

Q5CJA5              	100.00%		Q5JJE2              	100.00%
Bootstrap support for Q5CJA5 as seed ortholog is 100%.
Bootstrap support for Q5JJE2 as seed ortholog is 100%.

Group of orthologs #96. Best score 108 bits
Score difference with first non-orthologous sequence - C.hominis:108 P.kodakaraensis:108

Q5CHM0              	100.00%		Q5JDS2              	100.00%
Bootstrap support for Q5CHM0 as seed ortholog is 100%.
Bootstrap support for Q5JDS2 as seed ortholog is 100%.

Group of orthologs #97. Best score 107 bits
Score difference with first non-orthologous sequence - C.hominis:107 P.kodakaraensis:107

Q5CFI5              	100.00%		Q5JJG8              	100.00%
Bootstrap support for Q5CFI5 as seed ortholog is 100%.
Bootstrap support for Q5JJG8 as seed ortholog is 100%.

Group of orthologs #98. Best score 106 bits
Score difference with first non-orthologous sequence - C.hominis:106 P.kodakaraensis:106

Q5CG30              	100.00%		Q5JF69              	100.00%
Q5CJE5              	32.06%		
Q5CJM6              	8.39%		
Q5CIU2              	8.29%		
Bootstrap support for Q5CG30 as seed ortholog is 100%.
Bootstrap support for Q5JF69 as seed ortholog is 100%.

Group of orthologs #99. Best score 105 bits
Score difference with first non-orthologous sequence - C.hominis:105 P.kodakaraensis:105

Q5CFD6              	100.00%		Q5JJG4              	100.00%
Bootstrap support for Q5CFD6 as seed ortholog is 100%.
Bootstrap support for Q5JJG4 as seed ortholog is 100%.

Group of orthologs #100. Best score 104 bits
Score difference with first non-orthologous sequence - C.hominis:104 P.kodakaraensis:104

Q5CIC0              	100.00%		Q5JE49              	100.00%
Bootstrap support for Q5CIC0 as seed ortholog is 100%.
Bootstrap support for Q5JE49 as seed ortholog is 100%.

Group of orthologs #101. Best score 104 bits
Score difference with first non-orthologous sequence - C.hominis:104 P.kodakaraensis:104

Q5CNV4              	100.00%		Q5JDH4              	100.00%
Bootstrap support for Q5CNV4 as seed ortholog is 100%.
Bootstrap support for Q5JDH4 as seed ortholog is 100%.

Group of orthologs #102. Best score 103 bits
Score difference with first non-orthologous sequence - C.hominis:103 P.kodakaraensis:103

Q5CHH3              	100.00%		Q5JFM9              	100.00%
                    	       		Q5JF43              	8.33%
                    	       		Q5JDZ9              	6.11%
Bootstrap support for Q5CHH3 as seed ortholog is 100%.
Bootstrap support for Q5JFM9 as seed ortholog is 100%.

Group of orthologs #103. Best score 102 bits
Score difference with first non-orthologous sequence - C.hominis:102 P.kodakaraensis:102

Q5CGH5              	100.00%		Q5JGC7              	100.00%
Bootstrap support for Q5CGH5 as seed ortholog is 100%.
Bootstrap support for Q5JGC7 as seed ortholog is 100%.

Group of orthologs #104. Best score 102 bits
Score difference with first non-orthologous sequence - C.hominis:45 P.kodakaraensis:102

Q5CJP6              	100.00%		Q5JIR7              	100.00%
Bootstrap support for Q5CJP6 as seed ortholog is 89%.
Bootstrap support for Q5JIR7 as seed ortholog is 100%.

Group of orthologs #105. Best score 101 bits
Score difference with first non-orthologous sequence - C.hominis:101 P.kodakaraensis:101

Q5CIB1              	100.00%		Q5JJB9              	100.00%
                    	       		Q5JFZ8              	14.04%
                    	       		Q5JGP4              	13.00%
Bootstrap support for Q5CIB1 as seed ortholog is 100%.
Bootstrap support for Q5JJB9 as seed ortholog is 100%.

Group of orthologs #106. Best score 101 bits
Score difference with first non-orthologous sequence - C.hominis:101 P.kodakaraensis:101

Q5CJW5              	100.00%		Q52366              	100.00%
Bootstrap support for Q5CJW5 as seed ortholog is 100%.
Bootstrap support for Q52366 as seed ortholog is 100%.

Group of orthologs #107. Best score 101 bits
Score difference with first non-orthologous sequence - C.hominis:101 P.kodakaraensis:101

Q5CH15              	100.00%		Q5JJG7              	100.00%
Bootstrap support for Q5CH15 as seed ortholog is 100%.
Bootstrap support for Q5JJG7 as seed ortholog is 100%.

Group of orthologs #108. Best score 99 bits
Score difference with first non-orthologous sequence - C.hominis:99 P.kodakaraensis:99

Q5CKK7              	100.00%		Q5JF32              	100.00%
Q5CJE0              	20.58%		Q5JFD3              	44.62%
Bootstrap support for Q5CKK7 as seed ortholog is 100%.
Bootstrap support for Q5JF32 as seed ortholog is 100%.

Group of orthologs #109. Best score 99 bits
Score difference with first non-orthologous sequence - C.hominis:99 P.kodakaraensis:99

Q5CP76              	100.00%		Q5JGM4              	100.00%
Bootstrap support for Q5CP76 as seed ortholog is 100%.
Bootstrap support for Q5JGM4 as seed ortholog is 100%.

Group of orthologs #110. Best score 98 bits
Score difference with first non-orthologous sequence - C.hominis:98 P.kodakaraensis:98

Q5CH60              	100.00%		Q5JEZ9              	100.00%
                    	       		Q5JH45              	10.60%
Bootstrap support for Q5CH60 as seed ortholog is 100%.
Bootstrap support for Q5JEZ9 as seed ortholog is 100%.

Group of orthologs #111. Best score 98 bits
Score difference with first non-orthologous sequence - C.hominis:98 P.kodakaraensis:98

Q5CIR5              	100.00%		Q5JGC8              	100.00%
Bootstrap support for Q5CIR5 as seed ortholog is 100%.
Bootstrap support for Q5JGC8 as seed ortholog is 100%.

Group of orthologs #112. Best score 98 bits
Score difference with first non-orthologous sequence - C.hominis:98 P.kodakaraensis:98

Q5CKI1              	100.00%		Q5JGN5              	100.00%
Bootstrap support for Q5CKI1 as seed ortholog is 100%.
Bootstrap support for Q5JGN5 as seed ortholog is 100%.

Group of orthologs #113. Best score 97 bits
Score difference with first non-orthologous sequence - C.hominis:97 P.kodakaraensis:28

Q5CFH5              	100.00%		Q5JF30              	100.00%
Bootstrap support for Q5CFH5 as seed ortholog is 100%.
Bootstrap support for Q5JF30 as seed ortholog is 87%.

Group of orthologs #114. Best score 95 bits
Score difference with first non-orthologous sequence - C.hominis:95 P.kodakaraensis:95

Q5CF07              	100.00%		Q5JJG6              	100.00%
Bootstrap support for Q5CF07 as seed ortholog is 100%.
Bootstrap support for Q5JJG6 as seed ortholog is 100%.

Group of orthologs #115. Best score 93 bits
Score difference with first non-orthologous sequence - C.hominis:93 P.kodakaraensis:93

Q5CNH1              	100.00%		Q5JJF4              	100.00%
Bootstrap support for Q5CNH1 as seed ortholog is 100%.
Bootstrap support for Q5JJF4 as seed ortholog is 100%.

Group of orthologs #116. Best score 92 bits
Score difference with first non-orthologous sequence - C.hominis:92 P.kodakaraensis:92

Q5CGQ0              	100.00%		Q5JGS7              	100.00%
Bootstrap support for Q5CGQ0 as seed ortholog is 100%.
Bootstrap support for Q5JGS7 as seed ortholog is 100%.

Group of orthologs #117. Best score 90 bits
Score difference with first non-orthologous sequence - C.hominis:90 P.kodakaraensis:90

Q5CIC8              	100.00%		Q5JHF7              	100.00%
                    	       		Q5JE68              	38.86%
Bootstrap support for Q5CIC8 as seed ortholog is 100%.
Bootstrap support for Q5JHF7 as seed ortholog is 100%.

Group of orthologs #118. Best score 90 bits
Score difference with first non-orthologous sequence - C.hominis:90 P.kodakaraensis:90

Q5CHQ9              	100.00%		Q5JFZ5              	100.00%
Bootstrap support for Q5CHQ9 as seed ortholog is 100%.
Bootstrap support for Q5JFZ5 as seed ortholog is 100%.

Group of orthologs #119. Best score 90 bits
Score difference with first non-orthologous sequence - C.hominis:90 P.kodakaraensis:90

Q5CMG0              	100.00%		Q5JDW2              	100.00%
Bootstrap support for Q5CMG0 as seed ortholog is 100%.
Bootstrap support for Q5JDW2 as seed ortholog is 100%.

Group of orthologs #120. Best score 89 bits
Score difference with first non-orthologous sequence - C.hominis:89 P.kodakaraensis:89

Q5CEQ1              	100.00%		Q5JIR1              	100.00%
Bootstrap support for Q5CEQ1 as seed ortholog is 100%.
Bootstrap support for Q5JIR1 as seed ortholog is 100%.

Group of orthologs #121. Best score 89 bits
Score difference with first non-orthologous sequence - C.hominis:89 P.kodakaraensis:89

Q5CNP4              	100.00%		Q5JJF6              	100.00%
Bootstrap support for Q5CNP4 as seed ortholog is 100%.
Bootstrap support for Q5JJF6 as seed ortholog is 100%.

Group of orthologs #122. Best score 88 bits
Score difference with first non-orthologous sequence - C.hominis:88 P.kodakaraensis:88

Q5CMT9              	100.00%		Q5JFI2              	100.00%
Q5CLI0              	42.65%		
Bootstrap support for Q5CMT9 as seed ortholog is 100%.
Bootstrap support for Q5JFI2 as seed ortholog is 100%.

Group of orthologs #123. Best score 87 bits
Score difference with first non-orthologous sequence - C.hominis:87 P.kodakaraensis:87

Q5CHW9              	100.00%		Q5JHC0              	100.00%
Bootstrap support for Q5CHW9 as seed ortholog is 100%.
Bootstrap support for Q5JHC0 as seed ortholog is 100%.

Group of orthologs #124. Best score 86 bits
Score difference with first non-orthologous sequence - C.hominis:86 P.kodakaraensis:86

Q5CNH0              	100.00%		Q5JIB6              	100.00%
                    	       		Q5JH42              	24.29%
Bootstrap support for Q5CNH0 as seed ortholog is 100%.
Bootstrap support for Q5JIB6 as seed ortholog is 100%.

Group of orthologs #125. Best score 86 bits
Score difference with first non-orthologous sequence - C.hominis:86 P.kodakaraensis:86

Q5CH23              	100.00%		Q5JDB8              	100.00%
Bootstrap support for Q5CH23 as seed ortholog is 100%.
Bootstrap support for Q5JDB8 as seed ortholog is 100%.

Group of orthologs #126. Best score 86 bits
Score difference with first non-orthologous sequence - C.hominis:86 P.kodakaraensis:28

Q5CMA5              	100.00%		Q5JJ24              	100.00%
Bootstrap support for Q5CMA5 as seed ortholog is 100%.
Bootstrap support for Q5JJ24 as seed ortholog is 80%.

Group of orthologs #127. Best score 82 bits
Score difference with first non-orthologous sequence - C.hominis:32 P.kodakaraensis:82

Q5CJJ2              	100.00%		Q5JGR3              	100.00%
Bootstrap support for Q5CJJ2 as seed ortholog is 97%.
Bootstrap support for Q5JGR3 as seed ortholog is 100%.

Group of orthologs #128. Best score 82 bits
Score difference with first non-orthologous sequence - C.hominis:82 P.kodakaraensis:82

Q5CL06              	100.00%		Q5JH34              	100.00%
Bootstrap support for Q5CL06 as seed ortholog is 100%.
Bootstrap support for Q5JH34 as seed ortholog is 100%.

Group of orthologs #129. Best score 80 bits
Score difference with first non-orthologous sequence - C.hominis:80 P.kodakaraensis:80

Q5CMB7              	100.00%		Q5JIA1              	100.00%
Q5CHD4              	17.56%		
Q5CNB1              	5.78%		
Bootstrap support for Q5CMB7 as seed ortholog is 100%.
Bootstrap support for Q5JIA1 as seed ortholog is 100%.

Group of orthologs #130. Best score 79 bits
Score difference with first non-orthologous sequence - C.hominis:79 P.kodakaraensis:79

Q5CLR7              	100.00%		Q5JDV0              	100.00%
Q5CP05              	15.06%		
Bootstrap support for Q5CLR7 as seed ortholog is 100%.
Bootstrap support for Q5JDV0 as seed ortholog is 100%.

Group of orthologs #131. Best score 79 bits
Score difference with first non-orthologous sequence - C.hominis:79 P.kodakaraensis:79

Q5CHT1              	100.00%		Q5JDI9              	100.00%
Bootstrap support for Q5CHT1 as seed ortholog is 100%.
Bootstrap support for Q5JDI9 as seed ortholog is 100%.

Group of orthologs #132. Best score 79 bits
Score difference with first non-orthologous sequence - C.hominis:79 P.kodakaraensis:79

Q5CHE5              	100.00%		Q5JI50              	100.00%
Bootstrap support for Q5CHE5 as seed ortholog is 100%.
Bootstrap support for Q5JI50 as seed ortholog is 100%.

Group of orthologs #133. Best score 78 bits
Score difference with first non-orthologous sequence - C.hominis:78 P.kodakaraensis:78

Q5CJU7              	100.00%		Q5JIT0              	100.00%
Bootstrap support for Q5CJU7 as seed ortholog is 100%.
Bootstrap support for Q5JIT0 as seed ortholog is 100%.

Group of orthologs #134. Best score 76 bits
Score difference with first non-orthologous sequence - C.hominis:76 P.kodakaraensis:76

Q5CE95              	100.00%		Q5JIY3              	100.00%
Bootstrap support for Q5CE95 as seed ortholog is 100%.
Bootstrap support for Q5JIY3 as seed ortholog is 100%.

Group of orthologs #135. Best score 76 bits
Score difference with first non-orthologous sequence - C.hominis:76 P.kodakaraensis:76

Q5CP35              	100.00%		Q5JG27              	100.00%
Bootstrap support for Q5CP35 as seed ortholog is 100%.
Bootstrap support for Q5JG27 as seed ortholog is 100%.

Group of orthologs #136. Best score 75 bits
Score difference with first non-orthologous sequence - C.hominis:75 P.kodakaraensis:75

Q5CNY4              	100.00%		Q5JIF4              	100.00%
Bootstrap support for Q5CNY4 as seed ortholog is 100%.
Bootstrap support for Q5JIF4 as seed ortholog is 100%.

Group of orthologs #137. Best score 75 bits
Score difference with first non-orthologous sequence - C.hominis:33 P.kodakaraensis:75

Q5CN10              	100.00%		Q76CZ2              	100.00%
Bootstrap support for Q5CN10 as seed ortholog is 79%.
Bootstrap support for Q76CZ2 as seed ortholog is 100%.

Group of orthologs #138. Best score 74 bits
Score difference with first non-orthologous sequence - C.hominis:74 P.kodakaraensis:74

Q5CG81              	100.00%		Q5JGT7              	100.00%
Bootstrap support for Q5CG81 as seed ortholog is 100%.
Bootstrap support for Q5JGT7 as seed ortholog is 100%.

Group of orthologs #139. Best score 73 bits
Score difference with first non-orthologous sequence - C.hominis:73 P.kodakaraensis:73

Q5CNU1              	100.00%		Q5JG47              	100.00%
Bootstrap support for Q5CNU1 as seed ortholog is 100%.
Bootstrap support for Q5JG47 as seed ortholog is 100%.

Group of orthologs #140. Best score 72 bits
Score difference with first non-orthologous sequence - C.hominis:72 P.kodakaraensis:72

Q5CNG5              	100.00%		Q5JHP6              	100.00%
Bootstrap support for Q5CNG5 as seed ortholog is 100%.
Bootstrap support for Q5JHP6 as seed ortholog is 100%.

Group of orthologs #141. Best score 71 bits
Score difference with first non-orthologous sequence - C.hominis:8 P.kodakaraensis:71

Q5CGM9              	100.00%		Q5JJF2              	100.00%
Bootstrap support for Q5CGM9 as seed ortholog is 54%.
Alternative seed ortholog is Q5CFU1 (8 bits away from this cluster)
Bootstrap support for Q5JJF2 as seed ortholog is 100%.

Group of orthologs #142. Best score 71 bits
Score difference with first non-orthologous sequence - C.hominis:71 P.kodakaraensis:71

Q5CKA1              	100.00%		Q5JJG5              	100.00%
Bootstrap support for Q5CKA1 as seed ortholog is 100%.
Bootstrap support for Q5JJG5 as seed ortholog is 100%.

Group of orthologs #143. Best score 69 bits
Score difference with first non-orthologous sequence - C.hominis:69 P.kodakaraensis:69

Q5CHI7              	100.00%		Q5JG19              	100.00%
Bootstrap support for Q5CHI7 as seed ortholog is 100%.
Bootstrap support for Q5JG19 as seed ortholog is 100%.

Group of orthologs #144. Best score 69 bits
Score difference with first non-orthologous sequence - C.hominis:69 P.kodakaraensis:69

Q5CI99              	100.00%		Q5JGQ6              	100.00%
Bootstrap support for Q5CI99 as seed ortholog is 100%.
Bootstrap support for Q5JGQ6 as seed ortholog is 100%.

Group of orthologs #145. Best score 69 bits
Score difference with first non-orthologous sequence - C.hominis:69 P.kodakaraensis:69

Q5CM98              	100.00%		Q5JI69              	100.00%
Bootstrap support for Q5CM98 as seed ortholog is 100%.
Bootstrap support for Q5JI69 as seed ortholog is 100%.

Group of orthologs #146. Best score 69 bits
Score difference with first non-orthologous sequence - C.hominis:69 P.kodakaraensis:69

Q5CNW5              	100.00%		Q5JH78              	100.00%
Bootstrap support for Q5CNW5 as seed ortholog is 100%.
Bootstrap support for Q5JH78 as seed ortholog is 100%.

Group of orthologs #147. Best score 68 bits
Score difference with first non-orthologous sequence - C.hominis:68 P.kodakaraensis:68

Q5CKS1              	100.00%		Q5JHS3              	100.00%
Bootstrap support for Q5CKS1 as seed ortholog is 100%.
Bootstrap support for Q5JHS3 as seed ortholog is 100%.

Group of orthologs #148. Best score 67 bits
Score difference with first non-orthologous sequence - C.hominis:67 P.kodakaraensis:67

Q5CGE6              	100.00%		Q5JDK8              	100.00%
Bootstrap support for Q5CGE6 as seed ortholog is 100%.
Bootstrap support for Q5JDK8 as seed ortholog is 100%.

Group of orthologs #149. Best score 67 bits
Score difference with first non-orthologous sequence - C.hominis:67 P.kodakaraensis:67

Q5CI27              	100.00%		Q5JIS0              	100.00%
Bootstrap support for Q5CI27 as seed ortholog is 100%.
Bootstrap support for Q5JIS0 as seed ortholog is 100%.

Group of orthologs #150. Best score 66 bits
Score difference with first non-orthologous sequence - C.hominis:66 P.kodakaraensis:66

Q5CHY7              	100.00%		Q5JDH1              	100.00%
Bootstrap support for Q5CHY7 as seed ortholog is 100%.
Bootstrap support for Q5JDH1 as seed ortholog is 100%.

Group of orthologs #151. Best score 64 bits
Score difference with first non-orthologous sequence - C.hominis:64 P.kodakaraensis:64

Q5CER1              	100.00%		Q5JI91              	100.00%
Bootstrap support for Q5CER1 as seed ortholog is 100%.
Bootstrap support for Q5JI91 as seed ortholog is 100%.

Group of orthologs #152. Best score 64 bits
Score difference with first non-orthologous sequence - C.hominis:64 P.kodakaraensis:64

Q5CMX1              	100.00%		Q5JG26              	100.00%
Bootstrap support for Q5CMX1 as seed ortholog is 100%.
Bootstrap support for Q5JG26 as seed ortholog is 100%.

Group of orthologs #153. Best score 63 bits
Score difference with first non-orthologous sequence - C.hominis:63 P.kodakaraensis:63

Q5CIG3              	100.00%		Q5JGM7              	100.00%
Bootstrap support for Q5CIG3 as seed ortholog is 100%.
Bootstrap support for Q5JGM7 as seed ortholog is 100%.

Group of orthologs #154. Best score 63 bits
Score difference with first non-orthologous sequence - C.hominis:63 P.kodakaraensis:63

Q5CJT7              	100.00%		Q5JFW5              	100.00%
Bootstrap support for Q5CJT7 as seed ortholog is 100%.
Bootstrap support for Q5JFW5 as seed ortholog is 100%.

Group of orthologs #155. Best score 62 bits
Score difference with first non-orthologous sequence - C.hominis:62 P.kodakaraensis:62

Q5CFW2              	100.00%		Q5JDC7              	100.00%
Bootstrap support for Q5CFW2 as seed ortholog is 100%.
Bootstrap support for Q5JDC7 as seed ortholog is 100%.

Group of orthologs #156. Best score 62 bits
Score difference with first non-orthologous sequence - C.hominis:62 P.kodakaraensis:62

Q5CG85              	100.00%		Q5JI44              	100.00%
Bootstrap support for Q5CG85 as seed ortholog is 100%.
Bootstrap support for Q5JI44 as seed ortholog is 100%.

Group of orthologs #157. Best score 59 bits
Score difference with first non-orthologous sequence - C.hominis:59 P.kodakaraensis:59

Q5CK10              	100.00%		Q5JIC9              	100.00%
                    	       		Q5JHD3              	7.14%
Bootstrap support for Q5CK10 as seed ortholog is 100%.
Bootstrap support for Q5JIC9 as seed ortholog is 100%.

Group of orthologs #158. Best score 59 bits
Score difference with first non-orthologous sequence - C.hominis:59 P.kodakaraensis:59

Q5CI23              	100.00%		Q5JFX3              	100.00%
Bootstrap support for Q5CI23 as seed ortholog is 100%.
Bootstrap support for Q5JFX3 as seed ortholog is 100%.

Group of orthologs #159. Best score 59 bits
Score difference with first non-orthologous sequence - C.hominis:59 P.kodakaraensis:59

Q5CIK2              	100.00%		Q5JJF5              	100.00%
Bootstrap support for Q5CIK2 as seed ortholog is 100%.
Bootstrap support for Q5JJF5 as seed ortholog is 100%.

Group of orthologs #160. Best score 58 bits
Score difference with first non-orthologous sequence - C.hominis:58 P.kodakaraensis:58

Q5CEZ3              	100.00%		Q5JIE1              	100.00%
Bootstrap support for Q5CEZ3 as seed ortholog is 100%.
Bootstrap support for Q5JIE1 as seed ortholog is 100%.

Group of orthologs #161. Best score 58 bits
Score difference with first non-orthologous sequence - C.hominis:58 P.kodakaraensis:58

Q5CLC9              	100.00%		Q5JET7              	100.00%
Bootstrap support for Q5CLC9 as seed ortholog is 100%.
Bootstrap support for Q5JET7 as seed ortholog is 100%.

Group of orthologs #162. Best score 58 bits
Score difference with first non-orthologous sequence - C.hominis:58 P.kodakaraensis:58

Q5CKN6              	100.00%		Q5JI42              	100.00%
Bootstrap support for Q5CKN6 as seed ortholog is 100%.
Bootstrap support for Q5JI42 as seed ortholog is 100%.

Group of orthologs #163. Best score 58 bits
Score difference with first non-orthologous sequence - C.hominis:58 P.kodakaraensis:58

Q5CPB7              	100.00%		Q5JF34              	100.00%
Bootstrap support for Q5CPB7 as seed ortholog is 100%.
Bootstrap support for Q5JF34 as seed ortholog is 100%.

Group of orthologs #164. Best score 57 bits
Score difference with first non-orthologous sequence - C.hominis:57 P.kodakaraensis:57

Q5CJI1              	100.00%		Q5JHT3              	100.00%
Bootstrap support for Q5CJI1 as seed ortholog is 100%.
Bootstrap support for Q5JHT3 as seed ortholog is 100%.

Group of orthologs #165. Best score 56 bits
Score difference with first non-orthologous sequence - C.hominis:15 P.kodakaraensis:56

Q5CEA8              	100.00%		Q5JGZ3              	100.00%
                    	       		Q5JGZ2              	6.65%
Bootstrap support for Q5CEA8 as seed ortholog is 72%.
Alternative seed ortholog is Q5CLB0 (15 bits away from this cluster)
Bootstrap support for Q5JGZ3 as seed ortholog is 100%.

Group of orthologs #166. Best score 56 bits
Score difference with first non-orthologous sequence - C.hominis:1 P.kodakaraensis:56

Q5CM01              	100.00%		Q5JIR6              	100.00%
Bootstrap support for Q5CM01 as seed ortholog is 50%.
Alternative seed ortholog is Q5CE44 (1 bits away from this cluster)
Bootstrap support for Q5JIR6 as seed ortholog is 100%.

Group of orthologs #167. Best score 56 bits
Score difference with first non-orthologous sequence - C.hominis:56 P.kodakaraensis:56

Q5CN65              	100.00%		Q5JI92              	100.00%
Bootstrap support for Q5CN65 as seed ortholog is 100%.
Bootstrap support for Q5JI92 as seed ortholog is 100%.

Group of orthologs #168. Best score 55 bits
Score difference with first non-orthologous sequence - C.hominis:55 P.kodakaraensis:55

Q5CGA5              	100.00%		Q5JHL7              	100.00%
                    	       		Q5JG56              	23.24%
                    	       		Q5JDD9              	23.00%
                    	       		Q5JHD4              	14.04%
                    	       		Q5JE43              	11.86%
                    	       		Q5JGD3              	11.62%
                    	       		Q5JGV1              	11.38%
                    	       		Q5JH77              	11.38%
                    	       		Q5JEP9              	10.65%
                    	       		Q5JHJ6              	10.17%
                    	       		Q5JDD3              	9.93%
                    	       		Q5JCX0              	9.69%
                    	       		Q5JFJ1              	8.96%
                    	       		Q5JEB0              	8.72%
                    	       		Q5JF59              	8.47%
                    	       		Q5JG78              	7.99%
                    	       		Q5JIG9              	7.99%
                    	       		Q5JEM4              	6.05%
                    	       		Q5JDA7              	6.05%
                    	       		Q5JJ95              	5.81%
                    	       		Q5JIN8              	5.33%
                    	       		Q5JG70              	5.08%
Bootstrap support for Q5CGA5 as seed ortholog is 100%.
Bootstrap support for Q5JHL7 as seed ortholog is 100%.

Group of orthologs #169. Best score 53 bits
Score difference with first non-orthologous sequence - C.hominis:53 P.kodakaraensis:53

Q5CK05              	100.00%		Q5JDS0              	100.00%
Bootstrap support for Q5CK05 as seed ortholog is 100%.
Bootstrap support for Q5JDS0 as seed ortholog is 100%.

Group of orthologs #170. Best score 52 bits
Score difference with first non-orthologous sequence - C.hominis:52 P.kodakaraensis:52

Q5CJZ2              	100.00%		Q5JIE9              	100.00%
Q5CJZ1              	10.02%		
Bootstrap support for Q5CJZ2 as seed ortholog is 100%.
Bootstrap support for Q5JIE9 as seed ortholog is 100%.

Group of orthologs #171. Best score 52 bits
Score difference with first non-orthologous sequence - C.hominis:52 P.kodakaraensis:52

Q5CIG9              	100.00%		Q5JG53              	100.00%
Bootstrap support for Q5CIG9 as seed ortholog is 100%.
Bootstrap support for Q5JG53 as seed ortholog is 100%.

Group of orthologs #172. Best score 52 bits
Score difference with first non-orthologous sequence - C.hominis:52 P.kodakaraensis:52

Q5CMQ8              	100.00%		Q5JJF9              	100.00%
Bootstrap support for Q5CMQ8 as seed ortholog is 100%.
Bootstrap support for Q5JJF9 as seed ortholog is 100%.

Group of orthologs #173. Best score 51 bits
Score difference with first non-orthologous sequence - C.hominis:51 P.kodakaraensis:51

Q5CHD8              	100.00%		Q5JH82              	100.00%
Bootstrap support for Q5CHD8 as seed ortholog is 100%.
Bootstrap support for Q5JH82 as seed ortholog is 100%.

Group of orthologs #174. Best score 51 bits
Score difference with first non-orthologous sequence - C.hominis:51 P.kodakaraensis:51

Q5CIA9              	100.00%		Q5JI98              	100.00%
Bootstrap support for Q5CIA9 as seed ortholog is 100%.
Bootstrap support for Q5JI98 as seed ortholog is 100%.

Group of orthologs #175. Best score 50 bits
Score difference with first non-orthologous sequence - C.hominis:50 P.kodakaraensis:50

Q5CNC7              	100.00%		Q5JDG6              	100.00%
Bootstrap support for Q5CNC7 as seed ortholog is 100%.
Bootstrap support for Q5JDG6 as seed ortholog is 100%.

Group of orthologs #176. Best score 50 bits
Score difference with first non-orthologous sequence - C.hominis:5 P.kodakaraensis:9

Q5CL52              	100.00%		Q5JJE5              	100.00%
Bootstrap support for Q5CL52 as seed ortholog is 56%.
Alternative seed ortholog is Q5CMZ5 (5 bits away from this cluster)
Bootstrap support for Q5JJE5 as seed ortholog is 61%.
Alternative seed ortholog is Q5JF02 (9 bits away from this cluster)

Group of orthologs #177. Best score 49 bits
Score difference with first non-orthologous sequence - C.hominis:49 P.kodakaraensis:49

Q5CNV1              	100.00%		Q5JJF7              	100.00%
Bootstrap support for Q5CNV1 as seed ortholog is 100%.
Bootstrap support for Q5JJF7 as seed ortholog is 100%.

Group of orthologs #178. Best score 48 bits
Score difference with first non-orthologous sequence - C.hominis:48 P.kodakaraensis:48

Q5CNU4              	100.00%		Q5JDC4              	100.00%
Bootstrap support for Q5CNU4 as seed ortholog is 100%.
Bootstrap support for Q5JDC4 as seed ortholog is 100%.

Group of orthologs #179. Best score 47 bits
Score difference with first non-orthologous sequence - C.hominis:47 P.kodakaraensis:47

Q5CF52              	100.00%		Q5JIX8              	100.00%
                    	       		Q5JJF0              	7.78%
Bootstrap support for Q5CF52 as seed ortholog is 100%.
Bootstrap support for Q5JIX8 as seed ortholog is 100%.

Group of orthologs #180. Best score 46 bits
Score difference with first non-orthologous sequence - C.hominis:46 P.kodakaraensis:46

Q5CNU2              	100.00%		Q5JIE0              	100.00%
Bootstrap support for Q5CNU2 as seed ortholog is 100%.
Bootstrap support for Q5JIE0 as seed ortholog is 100%.

Group of orthologs #181. Best score 45 bits
Score difference with first non-orthologous sequence - C.hominis:45 P.kodakaraensis:45

Q5CEA6              	100.00%		Q5JIY8              	100.00%
Bootstrap support for Q5CEA6 as seed ortholog is 100%.
Bootstrap support for Q5JIY8 as seed ortholog is 100%.

Group of orthologs #182. Best score 45 bits
Score difference with first non-orthologous sequence - C.hominis:45 P.kodakaraensis:45

Q5CJK6              	100.00%		Q5JIR4              	100.00%
Bootstrap support for Q5CJK6 as seed ortholog is 100%.
Bootstrap support for Q5JIR4 as seed ortholog is 100%.

Group of orthologs #183. Best score 44 bits
Score difference with first non-orthologous sequence - C.hominis:44 P.kodakaraensis:44

Q5CGJ1              	100.00%		Q5JJG9              	100.00%
Bootstrap support for Q5CGJ1 as seed ortholog is 100%.
Bootstrap support for Q5JJG9 as seed ortholog is 100%.

Group of orthologs #184. Best score 44 bits
Score difference with first non-orthologous sequence - C.hominis:44 P.kodakaraensis:44

Q5CP28              	100.00%		Q5JE50              	100.00%
Bootstrap support for Q5CP28 as seed ortholog is 100%.
Bootstrap support for Q5JE50 as seed ortholog is 100%.

Group of orthologs #185. Best score 42 bits
Score difference with first non-orthologous sequence - C.hominis:42 P.kodakaraensis:42

Q5CL36              	100.00%		Q5JIU7              	100.00%
                    	       		Q5JI19              	24.82%
Bootstrap support for Q5CL36 as seed ortholog is 100%.
Bootstrap support for Q5JIU7 as seed ortholog is 100%.