###################################
180 groups of orthologs
459 in-paralogs from C.brenneri
188 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 881 bits
Score difference with first non-orthologous sequence - C.brenneri:652 C.trachomatis:881

G0NLW2              	100.00%		O84022              	100.00%
G0NRZ3              	99.31%		
Bootstrap support for G0NLW2 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 873 bits
Score difference with first non-orthologous sequence - C.brenneri:873 C.trachomatis:873

G0NHT1              	100.00%		O84250              	100.00%
G0PJ13              	100.00%		
Bootstrap support for G0NHT1 as seed ortholog is 100%.
Bootstrap support for G0PJ13 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 706 bits
Score difference with first non-orthologous sequence - C.brenneri:143 C.trachomatis:660

G0PJ01              	100.00%		P17821              	100.00%
G0MTS9              	98.76%		
Bootstrap support for G0PJ01 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #4. Best score 668 bits
Score difference with first non-orthologous sequence - C.brenneri:289 C.trachomatis:668

G0NH90              	100.00%		O84348              	100.00%
G0NVF2              	100.00%		
Bootstrap support for G0NH90 as seed ortholog is 100%.
Bootstrap support for G0NVF2 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #5. Best score 566 bits
Score difference with first non-orthologous sequence - C.brenneri:372 C.trachomatis:566

G0MFG0              	100.00%		O84716              	100.00%
G0PD74              	100.00%		
G0MYR1              	55.43%		
Bootstrap support for G0MFG0 as seed ortholog is 100%.
Bootstrap support for G0PD74 as seed ortholog is 100%.
Bootstrap support for O84716 as seed ortholog is 100%.

Group of orthologs #6. Best score 527 bits
Score difference with first non-orthologous sequence - C.brenneri:431 C.trachomatis:344

G0NBT5              	100.00%		P0C0Z7              	100.00%
Bootstrap support for G0NBT5 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #7. Best score 524 bits
Score difference with first non-orthologous sequence - C.brenneri:412 C.trachomatis:524

G0NZQ8              	100.00%		O84304              	100.00%
G0NFU8              	99.06%		
Bootstrap support for G0NZQ8 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #8. Best score 508 bits
Score difference with first non-orthologous sequence - C.brenneri:158 C.trachomatis:508

G0NR88              	100.00%		O84444              	100.00%
G0NR91              	99.09%		
Bootstrap support for G0NR88 as seed ortholog is 99%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #9. Best score 484 bits
Score difference with first non-orthologous sequence - C.brenneri:484 C.trachomatis:484

G0MG34              	100.00%		O84863              	100.00%
Bootstrap support for G0MG34 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #10. Best score 476 bits
Score difference with first non-orthologous sequence - C.brenneri:476 C.trachomatis:476

G0MJX6              	100.00%		O84834              	100.00%
Bootstrap support for G0MJX6 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #11. Best score 464 bits
Score difference with first non-orthologous sequence - C.brenneri:464 C.trachomatis:464

G0NG18              	100.00%		O84066              	100.00%
G0P914              	48.84%		
Bootstrap support for G0NG18 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #12. Best score 448 bits
Score difference with first non-orthologous sequence - C.brenneri:448 C.trachomatis:448

G0PDR8              	100.00%		O84754              	100.00%
G0NJQ7              	98.64%		
G0MV86              	6.03%		
G0PEG5              	5.49%		
Bootstrap support for G0PDR8 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #13. Best score 438 bits
Score difference with first non-orthologous sequence - C.brenneri:41 C.trachomatis:438

G0PD87              	100.00%		O84848              	100.00%
G0NVW8              	69.90%		
G0N000              	5.30%		
Bootstrap support for G0PD87 as seed ortholog is 75%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #14. Best score 438 bits
Score difference with first non-orthologous sequence - C.brenneri:438 C.trachomatis:438

G0MPA1              	100.00%		O84057              	100.00%
G0PJV3              	67.43%		
Bootstrap support for G0MPA1 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #15. Best score 438 bits
Score difference with first non-orthologous sequence - C.brenneri:438 C.trachomatis:438

G0MDY8              	100.00%		O84067              	100.00%
Bootstrap support for G0MDY8 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #16. Best score 431 bits
Score difference with first non-orthologous sequence - C.brenneri:431 C.trachomatis:431

G0NAK7              	100.00%		P0CD73              	100.00%
G0PIU3              	100.00%		
Bootstrap support for G0NAK7 as seed ortholog is 100%.
Bootstrap support for G0PIU3 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #17. Best score 409 bits
Score difference with first non-orthologous sequence - C.brenneri:409 C.trachomatis:409

G0MWK4              	100.00%		O84126              	100.00%
G0MDH8              	91.18%		
G0NUL0              	7.55%		
Bootstrap support for G0MWK4 as seed ortholog is 100%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #18. Best score 388 bits
Score difference with first non-orthologous sequence - C.brenneri:70 C.trachomatis:388

G0N649              	100.00%		P0CD71              	100.00%
G0NSB2              	100.00%		
Bootstrap support for G0N649 as seed ortholog is 95%.
Bootstrap support for G0NSB2 as seed ortholog is 95%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #19. Best score 385 bits
Score difference with first non-orthologous sequence - C.brenneri:385 C.trachomatis:385

G0NMA2              	100.00%		O84310              	100.00%
Bootstrap support for G0NMA2 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #20. Best score 377 bits
Score difference with first non-orthologous sequence - C.brenneri:377 C.trachomatis:377

G0MEK7              	100.00%		O84460              	100.00%
Bootstrap support for G0MEK7 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #21. Best score 366 bits
Score difference with first non-orthologous sequence - C.brenneri:366 C.trachomatis:366

G0NP31              	100.00%		O84591              	100.00%
Bootstrap support for G0NP31 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #22. Best score 363 bits
Score difference with first non-orthologous sequence - C.brenneri:363 C.trachomatis:363

G0N1C2              	100.00%		Q59321              	100.00%
Bootstrap support for G0N1C2 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #23. Best score 358 bits
Score difference with first non-orthologous sequence - C.brenneri:358 C.trachomatis:358

G0NQ27              	100.00%		P0CE13              	100.00%
G0NTE5              	100.00%		
G0NQ37              	79.88%		
G0M7F8              	77.40%		
G0M7F9              	77.09%		
Bootstrap support for G0NQ27 as seed ortholog is 100%.
Bootstrap support for G0NTE5 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #24. Best score 342 bits
Score difference with first non-orthologous sequence - C.brenneri:342 C.trachomatis:342

G0PMQ3              	100.00%		O84823              	100.00%
Bootstrap support for G0PMQ3 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #25. Best score 323 bits
Score difference with first non-orthologous sequence - C.brenneri:323 C.trachomatis:323

G0NBV9              	100.00%		O84849              	100.00%
Bootstrap support for G0NBV9 as seed ortholog is 100%.
Bootstrap support for O84849 as seed ortholog is 100%.

Group of orthologs #26. Best score 322 bits
Score difference with first non-orthologous sequence - C.brenneri:322 C.trachomatis:322

G0PE18              	100.00%		P0CD78              	100.00%
G0PHQ0              	98.35%		
Bootstrap support for G0PE18 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #27. Best score 317 bits
Score difference with first non-orthologous sequence - C.brenneri:196 C.trachomatis:317

G0NU79              	100.00%		O84035              	100.00%
G0PIR4              	99.62%		
Bootstrap support for G0NU79 as seed ortholog is 99%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #28. Best score 314 bits
Score difference with first non-orthologous sequence - C.brenneri:314 C.trachomatis:314

G0MB69              	100.00%		O84829              	100.00%
G0MYT7              	52.89%		
Bootstrap support for G0MB69 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #29. Best score 314 bits
Score difference with first non-orthologous sequence - C.brenneri:113 C.trachomatis:314

G0N281              	100.00%		O84248              	100.00%
Bootstrap support for G0N281 as seed ortholog is 99%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #30. Best score 311 bits
Score difference with first non-orthologous sequence - C.brenneri:160 C.trachomatis:311

G0N6W0              	100.00%		O84561              	100.00%
Bootstrap support for G0N6W0 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #31. Best score 307 bits
Score difference with first non-orthologous sequence - C.brenneri:172 C.trachomatis:307

G0NGU8              	100.00%		O84546              	100.00%
Bootstrap support for G0NGU8 as seed ortholog is 99%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #32. Best score 305 bits
Score difference with first non-orthologous sequence - C.brenneri:305 C.trachomatis:305

G0MEL6              	100.00%		P0CE09              	100.00%
B6VBN7              	20.51%		
G0MLX0              	5.89%		
Bootstrap support for G0MEL6 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #33. Best score 301 bits
Score difference with first non-orthologous sequence - C.brenneri:230 C.trachomatis:301

G0N9Q3              	100.00%		O84786              	100.00%
Bootstrap support for G0N9Q3 as seed ortholog is 100%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #34. Best score 298 bits
Score difference with first non-orthologous sequence - C.brenneri:298 C.trachomatis:298

G0NCV9              	100.00%		O84711              	100.00%
G0P124              	100.00%		
G0PBM3              	8.64%		
Bootstrap support for G0NCV9 as seed ortholog is 100%.
Bootstrap support for G0P124 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #35. Best score 297 bits
Score difference with first non-orthologous sequence - C.brenneri:297 C.trachomatis:297

G0P6U7              	100.00%		P0CE21              	100.00%
G0NRR9              	79.21%		
G0PBA2              	54.31%		
G0MM03              	51.85%		
Bootstrap support for G0P6U7 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #36. Best score 288 bits
Score difference with first non-orthologous sequence - C.brenneri:117 C.trachomatis:288

G0NPL6              	100.00%		O84098              	100.00%
Bootstrap support for G0NPL6 as seed ortholog is 99%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #37. Best score 283 bits
Score difference with first non-orthologous sequence - C.brenneri:161 C.trachomatis:283

G0P5P5              	100.00%		O84211              	100.00%
G0P1F8              	93.13%		
Bootstrap support for G0P5P5 as seed ortholog is 99%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #38. Best score 275 bits
Score difference with first non-orthologous sequence - C.brenneri:275 C.trachomatis:275

G0MLS6              	100.00%		O84439              	100.00%
Bootstrap support for G0MLS6 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #39. Best score 274 bits
Score difference with first non-orthologous sequence - C.brenneri:121 C.trachomatis:129

G0NWT3              	100.00%		O84249              	100.00%
Bootstrap support for G0NWT3 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 99%.

Group of orthologs #40. Best score 265 bits
Score difference with first non-orthologous sequence - C.brenneri:265 C.trachomatis:265

G0MRH8              	100.00%		O84828              	100.00%
G0MHL9              	15.36%		
Bootstrap support for G0MRH8 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #41. Best score 263 bits
Score difference with first non-orthologous sequence - C.brenneri:181 C.trachomatis:263

G0N2P2              	100.00%		O84352              	100.00%
G0MTX0              	13.89%		
G0PMS9              	12.31%		
G0MCI0              	11.44%		
G0MTX1              	5.59%		
Bootstrap support for G0N2P2 as seed ortholog is 100%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #42. Best score 263 bits
Score difference with first non-orthologous sequence - C.brenneri:92 C.trachomatis:263

G0N244              	100.00%		O84316              	100.00%
G0MQB6              	10.19%		
G0PME2              	6.20%		
Bootstrap support for G0N244 as seed ortholog is 79%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #43. Best score 262 bits
Score difference with first non-orthologous sequence - C.brenneri:107 C.trachomatis:262

G0P8E1              	100.00%		O84698              	100.00%
G0PCS4              	100.00%		
G0NX83              	20.50%		
G0NTY7              	18.55%		
G0PKM0              	17.50%		
Bootstrap support for G0P8E1 as seed ortholog is 98%.
Bootstrap support for G0PCS4 as seed ortholog is 97%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #44. Best score 262 bits
Score difference with first non-orthologous sequence - C.brenneri:262 C.trachomatis:262

G0P6R5              	100.00%		O84188              	100.00%
Bootstrap support for G0P6R5 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #45. Best score 256 bits
Score difference with first non-orthologous sequence - C.brenneri:124 C.trachomatis:256

G0N6L4              	100.00%		O84006              	100.00%
Bootstrap support for G0N6L4 as seed ortholog is 99%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #46. Best score 255 bits
Score difference with first non-orthologous sequence - C.brenneri:255 C.trachomatis:255

G0P8J2              	100.00%		O84309              	100.00%
G0MF43              	97.53%		
G0M7Y9              	95.05%		
G0MF47              	79.53%		
Bootstrap support for G0P8J2 as seed ortholog is 100%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #47. Best score 254 bits
Score difference with first non-orthologous sequence - C.brenneri:254 C.trachomatis:254

G0NDJ2              	100.00%		O84094              	100.00%
Bootstrap support for G0NDJ2 as seed ortholog is 100%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #48. Best score 253 bits
Score difference with first non-orthologous sequence - C.brenneri:253 C.trachomatis:253

G0NFU3              	100.00%		P0CD72              	100.00%
G0NZR3              	98.56%		
G0NCG6              	58.30%		
Bootstrap support for G0NFU3 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #49. Best score 250 bits
Score difference with first non-orthologous sequence - C.brenneri:250 C.trachomatis:250

G0PNM8              	100.00%		O84787              	100.00%
G0PMS0              	91.13%		
Bootstrap support for G0PNM8 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #50. Best score 249 bits
Score difference with first non-orthologous sequence - C.brenneri:249 C.trachomatis:249

G0NYC8              	100.00%		O84451              	100.00%
Bootstrap support for G0NYC8 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #51. Best score 247 bits
Score difference with first non-orthologous sequence - C.brenneri:247 C.trachomatis:247

G0N9L3              	100.00%		O84360              	100.00%
G0PKK7              	97.34%		
Bootstrap support for G0N9L3 as seed ortholog is 100%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #52. Best score 244 bits
Score difference with first non-orthologous sequence - C.brenneri:110 C.trachomatis:89

G0MXZ9              	100.00%		O84058              	100.00%
G0PLZ3              	92.78%		
Bootstrap support for G0MXZ9 as seed ortholog is 99%.
Bootstrap support for O84058 as seed ortholog is 98%.

Group of orthologs #53. Best score 235 bits
Score difference with first non-orthologous sequence - C.brenneri:99 C.trachomatis:235

G0MNU5              	100.00%		O84642              	100.00%
G0MSV6              	58.14%		
G0MHF2              	19.77%		
G0MSV4              	19.44%		
Bootstrap support for G0MNU5 as seed ortholog is 99%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #54. Best score 230 bits
Score difference with first non-orthologous sequence - C.brenneri:230 C.trachomatis:230

G0NZF8              	100.00%		O84296              	100.00%
G0P080              	100.00%		
G0M9U3              	65.79%		
Bootstrap support for G0NZF8 as seed ortholog is 100%.
Bootstrap support for G0P080 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #55. Best score 230 bits
Score difference with first non-orthologous sequence - C.brenneri:230 C.trachomatis:230

G0PB64              	100.00%		O84289              	100.00%
Bootstrap support for G0PB64 as seed ortholog is 100%.
Bootstrap support for O84289 as seed ortholog is 100%.

Group of orthologs #56. Best score 228 bits
Score difference with first non-orthologous sequence - C.brenneri:19 C.trachomatis:228

G0NVV9              	100.00%		O84797              	100.00%
G0PHR0              	98.48%		
Bootstrap support for G0NVV9 as seed ortholog is 76%.
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #57. Best score 228 bits
Score difference with first non-orthologous sequence - C.brenneri:177 C.trachomatis:228

G0MXV9              	100.00%		O84381              	100.00%
Bootstrap support for G0MXV9 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #58. Best score 222 bits
Score difference with first non-orthologous sequence - C.brenneri:222 C.trachomatis:222

G0MFD4              	100.00%		O84775              	100.00%
G0P1U1              	99.48%		
Bootstrap support for G0MFD4 as seed ortholog is 100%.
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #59. Best score 220 bits
Score difference with first non-orthologous sequence - C.brenneri:220 C.trachomatis:220

G0N5Q1              	100.00%		O84562              	100.00%
Bootstrap support for G0N5Q1 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #60. Best score 218 bits
Score difference with first non-orthologous sequence - C.brenneri:218 C.trachomatis:218

G0MC42              	100.00%		O84297              	100.00%
Bootstrap support for G0MC42 as seed ortholog is 100%.
Bootstrap support for O84297 as seed ortholog is 100%.

Group of orthologs #61. Best score 218 bits
Score difference with first non-orthologous sequence - C.brenneri:46 C.trachomatis:218

G0N3E9              	100.00%		O84345              	100.00%
Bootstrap support for G0N3E9 as seed ortholog is 87%.
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #62. Best score 215 bits
Score difference with first non-orthologous sequence - C.brenneri:215 C.trachomatis:215

G0PA93              	100.00%		O84630              	100.00%
Bootstrap support for G0PA93 as seed ortholog is 100%.
Bootstrap support for O84630 as seed ortholog is 100%.

Group of orthologs #63. Best score 210 bits
Score difference with first non-orthologous sequence - C.brenneri:210 C.trachomatis:114

G0P7L3              	100.00%		O84406              	100.00%
G0N7C4              	99.73%		
G0N7C5              	76.04%		
G0P7L4              	75.10%		
G0M7N6              	39.30%		
G0NUP9              	27.73%		
G0NRV5              	26.51%		
G0NRV6              	22.88%		
G0MSR8              	20.32%		
G0PD18              	18.84%		
Bootstrap support for G0P7L3 as seed ortholog is 100%.
Bootstrap support for O84406 as seed ortholog is 99%.

Group of orthologs #64. Best score 207 bits
Score difference with first non-orthologous sequence - C.brenneri:30 C.trachomatis:207

G0NPZ4              	100.00%		O84266              	100.00%
G0N0Q1              	26.95%		
G0N6F5              	25.98%		
G0MX52              	19.30%		
G0M6P5              	18.92%		
G0MX51              	18.71%		
G0MX61              	18.65%		
G0MHN3              	16.71%		
G0MX54              	16.01%		
G0MHN2              	13.10%		
G0MHM9              	13.05%		
G0MHN0              	11.43%		
G0N535              	8.19%		
G0M6P4              	7.01%		
G0NWR1              	6.42%		
G0N0Y5              	6.25%		
G0N9E4              	5.77%		
G0PNJ0              	5.77%		
G0NUA7              	5.28%		
G0N184              	5.01%		
Bootstrap support for G0NPZ4 as seed ortholog is 73%.
Alternative seed ortholog is G0MLA0 (30 bits away from this cluster)
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #65. Best score 204 bits
Score difference with first non-orthologous sequence - C.brenneri:108 C.trachomatis:204

G0NH88              	100.00%		O84596              	100.00%
G0NVF4              	99.64%		
G0NN87              	79.06%		
Bootstrap support for G0NH88 as seed ortholog is 98%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #66. Best score 200 bits
Score difference with first non-orthologous sequence - C.brenneri:77 C.trachomatis:200

G0N7T2              	100.00%		P38004              	100.00%
G0N7T3              	84.12%		
G0MKX4              	33.94%		
Bootstrap support for G0N7T2 as seed ortholog is 99%.
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #67. Best score 200 bits
Score difference with first non-orthologous sequence - C.brenneri:200 C.trachomatis:61

G0NLP4              	100.00%		O84712              	100.00%
Bootstrap support for G0NLP4 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 99%.

Group of orthologs #68. Best score 195 bits
Score difference with first non-orthologous sequence - C.brenneri:49 C.trachomatis:195

G0NDH9              	100.00%		O84423              	100.00%
Bootstrap support for G0NDH9 as seed ortholog is 90%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #69. Best score 192 bits
Score difference with first non-orthologous sequence - C.brenneri:192 C.trachomatis:192

G0NZU1              	100.00%		O84332              	100.00%
Bootstrap support for G0NZU1 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #70. Best score 191 bits
Score difference with first non-orthologous sequence - C.brenneri:191 C.trachomatis:191

G0MXI6              	100.00%		O84812              	100.00%
Bootstrap support for G0MXI6 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #71. Best score 185 bits
Score difference with first non-orthologous sequence - C.brenneri:185 C.trachomatis:185

G0NYL5              	100.00%		O84196              	100.00%
G0PAG8              	98.44%		
Bootstrap support for G0NYL5 as seed ortholog is 100%.
Bootstrap support for O84196 as seed ortholog is 100%.

Group of orthologs #72. Best score 181 bits
Score difference with first non-orthologous sequence - C.brenneri:115 C.trachomatis:181

G0ME47              	100.00%		O84608              	100.00%
G0PDG1              	100.00%		
Bootstrap support for G0ME47 as seed ortholog is 99%.
Bootstrap support for G0PDG1 as seed ortholog is 100%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #73. Best score 181 bits
Score difference with first non-orthologous sequence - C.brenneri:181 C.trachomatis:181

G0NFR2              	100.00%		O84704              	100.00%
Bootstrap support for G0NFR2 as seed ortholog is 100%.
Bootstrap support for O84704 as seed ortholog is 100%.

Group of orthologs #74. Best score 181 bits
Score difference with first non-orthologous sequence - C.brenneri:136 C.trachomatis:181

G0NLX6              	100.00%		O84859              	100.00%
Bootstrap support for G0NLX6 as seed ortholog is 99%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #75. Best score 176 bits
Score difference with first non-orthologous sequence - C.brenneri:176 C.trachomatis:48

G0PD01              	100.00%		O84026              	100.00%
G0PDB7              	100.00%		
Bootstrap support for G0PD01 as seed ortholog is 100%.
Bootstrap support for G0PDB7 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 90%.

Group of orthologs #76. Best score 176 bits
Score difference with first non-orthologous sequence - C.brenneri:48 C.trachomatis:176

G0PI50              	100.00%		O84734              	100.00%
G0NUN3              	99.62%		
Bootstrap support for G0PI50 as seed ortholog is 89%.
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #77. Best score 176 bits
Score difference with first non-orthologous sequence - C.brenneri:176 C.trachomatis:176

G0NRK2              	100.00%		O84613              	100.00%
Bootstrap support for G0NRK2 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #78. Best score 172 bits
Score difference with first non-orthologous sequence - C.brenneri:172 C.trachomatis:172

G0MW70              	100.00%		O84081              	100.00%
Bootstrap support for G0MW70 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #79. Best score 168 bits
Score difference with first non-orthologous sequence - C.brenneri:74 C.trachomatis:168

G0NY88              	100.00%		O84247              	100.00%
G0PA96              	100.00%		
Bootstrap support for G0NY88 as seed ortholog is 99%.
Bootstrap support for G0PA96 as seed ortholog is 99%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #80. Best score 168 bits
Score difference with first non-orthologous sequence - C.brenneri:168 C.trachomatis:168

G0NYE2              	100.00%		O84402              	100.00%
G0MPQ3              	6.72%		
Bootstrap support for G0NYE2 as seed ortholog is 100%.
Bootstrap support for O84402 as seed ortholog is 100%.

Group of orthologs #81. Best score 168 bits
Score difference with first non-orthologous sequence - C.brenneri:168 C.trachomatis:77

G0PIJ8              	100.00%		O84755              	100.00%
G0PJP7              	99.90%		
Bootstrap support for G0PIJ8 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 91%.

Group of orthologs #82. Best score 161 bits
Score difference with first non-orthologous sequence - C.brenneri:161 C.trachomatis:161

G0MCJ4              	100.00%		O84676              	100.00%
                    	       		O84722              	12.72%
Bootstrap support for G0MCJ4 as seed ortholog is 100%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #83. Best score 158 bits
Score difference with first non-orthologous sequence - C.brenneri:65 C.trachomatis:158

G0MJY0              	100.00%		O84234              	100.00%
G0PEM3              	30.52%		
G0P0Y9              	27.24%		
G0NWE1              	21.74%		
G0N8P4              	19.43%		
G0NBU5              	15.17%		
G0NR41              	11.62%		
G0NRI8              	11.45%		
G0MEW8              	11.18%		
G0MQT1              	9.94%		
G0NSE2              	9.49%		
Bootstrap support for G0MJY0 as seed ortholog is 95%.
Bootstrap support for O84234 as seed ortholog is 100%.

Group of orthologs #84. Best score 158 bits
Score difference with first non-orthologous sequence - C.brenneri:158 C.trachomatis:158

G0P479              	100.00%		O84007              	100.00%
G0P1P7              	93.06%		
Bootstrap support for G0P479 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #85. Best score 158 bits
Score difference with first non-orthologous sequence - C.brenneri:158 C.trachomatis:158

G0PG27              	100.00%		O84028              	100.00%
Bootstrap support for G0PG27 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 100%.

Group of orthologs #86. Best score 152 bits
Score difference with first non-orthologous sequence - C.brenneri:56 C.trachomatis:57

G0NH83              	100.00%		O84260              	100.00%
G0NVF8              	52.76%		
G0MZJ1              	6.86%		
Bootstrap support for G0NH83 as seed ortholog is 92%.
Bootstrap support for O84260 as seed ortholog is 92%.

Group of orthologs #87. Best score 152 bits
Score difference with first non-orthologous sequence - C.brenneri:152 C.trachomatis:152

G0P6S0              	100.00%		O84456              	100.00%
Bootstrap support for G0P6S0 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #88. Best score 145 bits
Score difference with first non-orthologous sequence - C.brenneri:29 C.trachomatis:145

G0MDZ2              	100.00%		O84049              	100.00%
Bootstrap support for G0MDZ2 as seed ortholog is 78%.
Bootstrap support for O84049 as seed ortholog is 100%.

Group of orthologs #89. Best score 144 bits
Score difference with first non-orthologous sequence - C.brenneri:144 C.trachomatis:144

G0NPM2              	100.00%		O84383              	100.00%
G0PME9              	97.63%		
Bootstrap support for G0NPM2 as seed ortholog is 100%.
Bootstrap support for O84383 as seed ortholog is 100%.

Group of orthologs #90. Best score 143 bits
Score difference with first non-orthologous sequence - C.brenneri:143 C.trachomatis:143

G0NS68              	100.00%		O84123              	100.00%
Bootstrap support for G0NS68 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #91. Best score 134 bits
Score difference with first non-orthologous sequence - C.brenneri:134 C.trachomatis:134

G0MBS7              	100.00%		O84835              	100.00%
Bootstrap support for G0MBS7 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #92. Best score 131 bits
Score difference with first non-orthologous sequence - C.brenneri:74 C.trachomatis:131

G0N9A3              	100.00%		O84732              	100.00%
G0P9G8              	30.61%		
G0P531              	23.68%		
G0ML10              	13.00%		
G0NCL5              	9.83%		
G0NRC9              	7.68%		
G0MZY5              	7.47%		
G0PAQ6              	7.30%		
G0P8B4              	7.04%		
G0MIP9              	6.39%		
Bootstrap support for G0N9A3 as seed ortholog is 91%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #93. Best score 124 bits
Score difference with first non-orthologous sequence - C.brenneri:124 C.trachomatis:124

G0NPP7              	100.00%		O84864              	100.00%
G0MI40              	26.06%		
G0NGY5              	21.28%		
G0NNB9              	15.78%		
G0NGY4              	9.45%		
G0M6H2              	7.06%		
Bootstrap support for G0NPP7 as seed ortholog is 100%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #94. Best score 121 bits
Score difference with first non-orthologous sequence - C.brenneri:121 C.trachomatis:121

G0NRK3              	100.00%		O84649              	100.00%
G0PNJ8              	9.17%		
Bootstrap support for G0NRK3 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #95. Best score 119 bits
Score difference with first non-orthologous sequence - C.brenneri:119 C.trachomatis:119

G0PE20              	100.00%		O84033              	100.00%
G0PHP8              	100.00%		
Bootstrap support for G0PE20 as seed ortholog is 100%.
Bootstrap support for G0PHP8 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #96. Best score 118 bits
Score difference with first non-orthologous sequence - C.brenneri:69 C.trachomatis:118

G0MCJ7              	100.00%		O84589              	100.00%
Bootstrap support for G0MCJ7 as seed ortholog is 96%.
Bootstrap support for O84589 as seed ortholog is 100%.

Group of orthologs #97. Best score 116 bits
Score difference with first non-orthologous sequence - C.brenneri:12 C.trachomatis:116

G0NG06              	100.00%		O84548              	100.00%
G0P905              	100.00%		
G0NG05              	59.29%		
G0P904              	59.17%		
G0P906              	58.10%		
G0NG07              	58.10%		
G0NQR8              	28.57%		
Bootstrap support for G0NG06 as seed ortholog is 60%.
Alternative seed ortholog is G0NMA5 (12 bits away from this cluster)
Bootstrap support for G0P905 as seed ortholog is 60%.
Alternative seed ortholog is G0NMA5 (12 bits away from this cluster)
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #98. Best score 114 bits
Score difference with first non-orthologous sequence - C.brenneri:22 C.trachomatis:114

G0PE21              	100.00%		O84358              	100.00%
G0PHP7              	90.17%		
Bootstrap support for G0PE21 as seed ortholog is 76%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #99. Best score 111 bits
Score difference with first non-orthologous sequence - C.brenneri:111 C.trachomatis:111

G0P5L6              	17.62%		O84212              	100.00%
G0NHB8              	100.00%		
G0PHV0              	100.00%		
G0PG71              	17.36%		
G0MLR9              	7.35%		
Bootstrap support for G0NHB8 as seed ortholog is 100%.
Bootstrap support for G0PHV0 as seed ortholog is 100%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #100. Best score 111 bits
Score difference with first non-orthologous sequence - C.brenneri:111 C.trachomatis:111

G0ME00              	100.00%		O84668              	100.00%
G0NR59              	35.43%		O84193              	13.51%
Bootstrap support for G0ME00 as seed ortholog is 100%.
Bootstrap support for O84668 as seed ortholog is 100%.

Group of orthologs #101. Best score 111 bits
Score difference with first non-orthologous sequence - C.brenneri:111 C.trachomatis:111

B3GNH2              	100.00%		O84508              	100.00%
Bootstrap support for B3GNH2 as seed ortholog is 100%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #102. Best score 109 bits
Score difference with first non-orthologous sequence - C.brenneri:109 C.trachomatis:109

G0MGK2              	100.00%		O84435              	100.00%
G0PNZ7              	36.95%		
Bootstrap support for G0MGK2 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #103. Best score 109 bits
Score difference with first non-orthologous sequence - C.brenneri:22 C.trachomatis:109

G0MXF6              	100.00%		O84599              	100.00%
Bootstrap support for G0MXF6 as seed ortholog is 74%.
Alternative seed ortholog is G0N4R8 (22 bits away from this cluster)
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #104. Best score 108 bits
Score difference with first non-orthologous sequence - C.brenneri:44 C.trachomatis:108

G0MGD1              	100.00%		O84130              	100.00%
Bootstrap support for G0MGD1 as seed ortholog is 90%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #105. Best score 107 bits
Score difference with first non-orthologous sequence - C.brenneri:107 C.trachomatis:107

G0MCK0              	100.00%		O84771              	100.00%
Bootstrap support for G0MCK0 as seed ortholog is 100%.
Bootstrap support for O84771 as seed ortholog is 100%.

Group of orthologs #106. Best score 106 bits
Score difference with first non-orthologous sequence - C.brenneri:106 C.trachomatis:106

G0N4M1              	100.00%		O84241              	100.00%
Bootstrap support for G0N4M1 as seed ortholog is 100%.
Bootstrap support for O84241 as seed ortholog is 100%.

Group of orthologs #107. Best score 106 bits
Score difference with first non-orthologous sequence - C.brenneri:106 C.trachomatis:106

G0NI70              	100.00%		O84720              	100.00%
Bootstrap support for G0NI70 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #108. Best score 105 bits
Score difference with first non-orthologous sequence - C.brenneri:105 C.trachomatis:105

G0P5E4              	100.00%		O84442              	100.00%
G0MQR0              	49.72%		
G0NEB6              	6.46%		
G0N0Y8              	5.89%		
Bootstrap support for G0P5E4 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #109. Best score 101 bits
Score difference with first non-orthologous sequence - C.brenneri:40 C.trachomatis:101

G0N647              	100.00%		O84200              	100.00%
G0NSB0              	100.00%		
Bootstrap support for G0N647 as seed ortholog is 86%.
Bootstrap support for G0NSB0 as seed ortholog is 87%.
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #110. Best score 100 bits
Score difference with first non-orthologous sequence - C.brenneri:100 C.trachomatis:100

G0MLS7              	100.00%		O84831              	100.00%
G0N2V7              	91.23%		
Bootstrap support for G0MLS7 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #111. Best score 99 bits
Score difference with first non-orthologous sequence - C.brenneri:99 C.trachomatis:99

G0NYX6              	100.00%		O84391              	100.00%
Bootstrap support for G0NYX6 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #112. Best score 98 bits
Score difference with first non-orthologous sequence - C.brenneri:98 C.trachomatis:98

G0NSF1              	100.00%		O84478              	100.00%
G0NSJ6              	100.00%		
Bootstrap support for G0NSF1 as seed ortholog is 100%.
Bootstrap support for G0NSJ6 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #113. Best score 98 bits
Score difference with first non-orthologous sequence - C.brenneri:98 C.trachomatis:98

G0P5B0              	100.00%		O84390              	100.00%
Bootstrap support for G0P5B0 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #114. Best score 97 bits
Score difference with first non-orthologous sequence - C.brenneri:41 C.trachomatis:97

G0NC24              	100.00%		O84781              	100.00%
G0NPU0              	20.00%		
G0PM41              	19.29%		
G0NPU1              	19.29%		
G0NPT9              	18.07%		
G0MJG7              	13.60%		
G0NFW7              	13.20%		
G0NZN9              	12.39%		
G0NKQ4              	9.24%		
G0M803              	6.09%		
Bootstrap support for G0NC24 as seed ortholog is 82%.
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #115. Best score 95 bits
Score difference with first non-orthologous sequence - C.brenneri:7 C.trachomatis:95

G0N1K7              	100.00%		O84843              	100.00%
Bootstrap support for G0N1K7 as seed ortholog is 45%.
Alternative seed ortholog is G0NK31 (7 bits away from this cluster)
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #116. Best score 94 bits
Score difference with first non-orthologous sequence - C.brenneri:94 C.trachomatis:94

G0NG23              	100.00%		O84782              	100.00%
G0MRK8              	14.06%		
G0PMR6              	10.23%		
G0NIY6              	9.23%		
Bootstrap support for G0NG23 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #117. Best score 93 bits
Score difference with first non-orthologous sequence - C.brenneri:93 C.trachomatis:93

G0MJ89              	100.00%		O84719              	100.00%
G0MKD4              	43.59%		
Bootstrap support for G0MJ89 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #118. Best score 92 bits
Score difference with first non-orthologous sequence - C.brenneri:18 C.trachomatis:92

G0NTE9              	100.00%		O84851              	100.00%
Bootstrap support for G0NTE9 as seed ortholog is 77%.
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #119. Best score 89 bits
Score difference with first non-orthologous sequence - C.brenneri:89 C.trachomatis:89

G0MNV8              	100.00%		O84578              	100.00%
Bootstrap support for G0MNV8 as seed ortholog is 100%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #120. Best score 89 bits
Score difference with first non-orthologous sequence - C.brenneri:5 C.trachomatis:89

G0N0L7              	100.00%		O84530              	100.00%
Bootstrap support for G0N0L7 as seed ortholog is 53%.
Alternative seed ortholog is G0PEW7 (5 bits away from this cluster)
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #121. Best score 87 bits
Score difference with first non-orthologous sequence - C.brenneri:87 C.trachomatis:87

G0MYP0              	100.00%		O84463              	100.00%
Bootstrap support for G0MYP0 as seed ortholog is 100%.
Bootstrap support for O84463 as seed ortholog is 100%.

Group of orthologs #122. Best score 87 bits
Score difference with first non-orthologous sequence - C.brenneri:87 C.trachomatis:87

G0N5N6              	100.00%		O84215              	100.00%
Bootstrap support for G0N5N6 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #123. Best score 84 bits
Score difference with first non-orthologous sequence - C.brenneri:84 C.trachomatis:84

G0MFR4              	100.00%		O84353              	100.00%
G0PAL6              	100.00%		
Bootstrap support for G0MFR4 as seed ortholog is 100%.
Bootstrap support for G0PAL6 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #124. Best score 84 bits
Score difference with first non-orthologous sequence - C.brenneri:84 C.trachomatis:84

G0MG82              	100.00%		P0CD79              	100.00%
Bootstrap support for G0MG82 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #125. Best score 83 bits
Score difference with first non-orthologous sequence - C.brenneri:35 C.trachomatis:17

G0P7M5              	100.00%		O84660              	100.00%
G0N608              	68.74%		
Bootstrap support for G0P7M5 as seed ortholog is 84%.
Bootstrap support for O84660 as seed ortholog is 72%.
Alternative seed ortholog is O84691 (17 bits away from this cluster)

Group of orthologs #126. Best score 83 bits
Score difference with first non-orthologous sequence - C.brenneri:83 C.trachomatis:83

G0MEL4              	100.00%		O84533              	100.00%
Bootstrap support for G0MEL4 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #127. Best score 82 bits
Score difference with first non-orthologous sequence - C.brenneri:82 C.trachomatis:82

G0N3P0              	100.00%		O84595              	100.00%
Bootstrap support for G0N3P0 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #128. Best score 80 bits
Score difference with first non-orthologous sequence - C.brenneri:80 C.trachomatis:80

G0MGA2              	100.00%		O84321              	100.00%
Bootstrap support for G0MGA2 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #129. Best score 79 bits
Score difference with first non-orthologous sequence - C.brenneri:79 C.trachomatis:79

G0MZ87              	100.00%		O84139              	100.00%
G0MZ91              	100.00%		
Bootstrap support for G0MZ87 as seed ortholog is 100%.
Bootstrap support for G0MZ91 as seed ortholog is 100%.
Bootstrap support for O84139 as seed ortholog is 100%.

Group of orthologs #130. Best score 79 bits
Score difference with first non-orthologous sequence - C.brenneri:3 C.trachomatis:79

G0MC89              	100.00%		O84650              	100.00%
Bootstrap support for G0MC89 as seed ortholog is 50%.
Alternative seed ortholog is G0NUW4 (3 bits away from this cluster)
Bootstrap support for O84650 as seed ortholog is 100%.

Group of orthologs #131. Best score 79 bits
Score difference with first non-orthologous sequence - C.brenneri:79 C.trachomatis:79

G0MCK1              	100.00%		O84611              	100.00%
Bootstrap support for G0MCK1 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #132. Best score 79 bits
Score difference with first non-orthologous sequence - C.brenneri:79 C.trachomatis:79

G0MK98              	100.00%		O84499              	100.00%
Bootstrap support for G0MK98 as seed ortholog is 100%.
Bootstrap support for O84499 as seed ortholog is 100%.

Group of orthologs #133. Best score 77 bits
Score difference with first non-orthologous sequence - C.brenneri:77 C.trachomatis:77

G0N073              	100.00%		O84338              	100.00%
G0MCA3              	20.03%		
G0MER9              	19.70%		
G0P8T2              	5.42%		
G0NTD0              	5.25%		
Bootstrap support for G0N073 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #134. Best score 76 bits
Score difference with first non-orthologous sequence - C.brenneri:28 C.trachomatis:76

G0MN12              	100.00%		O84469              	100.00%
G0PLN4              	100.00%		
Bootstrap support for G0MN12 as seed ortholog is 74%.
Alternative seed ortholog is G0N1C3 (28 bits away from this cluster)
Bootstrap support for G0PLN4 as seed ortholog is 75%.
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #135. Best score 76 bits
Score difference with first non-orthologous sequence - C.brenneri:76 C.trachomatis:76

G0PLC0              	100.00%		P55137              	100.00%
G0NBM4              	96.31%		
Bootstrap support for G0PLC0 as seed ortholog is 100%.
Bootstrap support for P55137 as seed ortholog is 100%.

Group of orthologs #136. Best score 76 bits
Score difference with first non-orthologous sequence - C.brenneri:28 C.trachomatis:76

G0PGS5              	100.00%		O84687              	100.00%
Bootstrap support for G0PGS5 as seed ortholog is 84%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #137. Best score 74 bits
Score difference with first non-orthologous sequence - C.brenneri:29 C.trachomatis:74

G0MPG5              	100.00%		P0CD81              	100.00%
Bootstrap support for G0MPG5 as seed ortholog is 89%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #138. Best score 73 bits
Score difference with first non-orthologous sequence - C.brenneri:7 C.trachomatis:73

G0PGH2              	100.00%		P0CE03              	100.00%
G0PIZ6              	95.78%		
Bootstrap support for G0PGH2 as seed ortholog is 70%.
Alternative seed ortholog is G0N5L5 (7 bits away from this cluster)
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #139. Best score 72 bits
Score difference with first non-orthologous sequence - C.brenneri:5 C.trachomatis:72

G0PMC5              	100.00%		O84695              	100.00%
G0PLA5              	23.30%		O84205              	15.07%
                    	       		O84132              	8.07%
Bootstrap support for G0PMC5 as seed ortholog is 52%.
Alternative seed ortholog is G0P2Z9 (5 bits away from this cluster)
Bootstrap support for O84695 as seed ortholog is 100%.

Group of orthologs #140. Best score 72 bits
Score difference with first non-orthologous sequence - C.brenneri:72 C.trachomatis:72

G0NW56              	100.00%		O84696              	100.00%
                    	       		O84204              	20.00%
Bootstrap support for G0NW56 as seed ortholog is 100%.
Bootstrap support for O84696 as seed ortholog is 100%.

Group of orthologs #141. Best score 72 bits
Score difference with first non-orthologous sequence - C.brenneri:72 C.trachomatis:72

G0NBT4              	100.00%		P0C0Z8              	100.00%
Bootstrap support for G0NBT4 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #142. Best score 71 bits
Score difference with first non-orthologous sequence - C.brenneri:71 C.trachomatis:71

B3VAB9              	100.00%		O84128              	100.00%
Bootstrap support for B3VAB9 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #143. Best score 71 bits
Score difference with first non-orthologous sequence - C.brenneri:71 C.trachomatis:71

G0MGC3              	100.00%		O84703              	100.00%
Bootstrap support for G0MGC3 as seed ortholog is 100%.
Bootstrap support for O84703 as seed ortholog is 100%.

Group of orthologs #144. Best score 70 bits
Score difference with first non-orthologous sequence - C.brenneri:70 C.trachomatis:70

G0MP86              	100.00%		O84686              	100.00%
G0MP84              	98.17%		
Bootstrap support for G0MP86 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #145. Best score 69 bits
Score difference with first non-orthologous sequence - C.brenneri:69 C.trachomatis:69

G0MBD9              	100.00%		O84284              	100.00%
G0P5C7              	64.13%		
G0NKG8              	63.68%		
Bootstrap support for G0MBD9 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #146. Best score 69 bits
Score difference with first non-orthologous sequence - C.brenneri:69 C.trachomatis:69

G0PHL3              	100.00%		O84496              	100.00%
G0NYH0              	96.97%		
G0NJU0              	13.16%		
Bootstrap support for G0PHL3 as seed ortholog is 100%.
Bootstrap support for O84496 as seed ortholog is 100%.

Group of orthologs #147. Best score 68 bits
Score difference with first non-orthologous sequence - C.brenneri:3 C.trachomatis:68

G0N8Z7              	100.00%		O84544              	100.00%
Bootstrap support for G0N8Z7 as seed ortholog is 56%.
Alternative seed ortholog is G0N9P5 (3 bits away from this cluster)
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #148. Best score 68 bits
Score difference with first non-orthologous sequence - C.brenneri:68 C.trachomatis:68

G0NUX7              	100.00%		O84618              	100.00%
Bootstrap support for G0NUX7 as seed ortholog is 100%.
Bootstrap support for O84618 as seed ortholog is 100%.

Group of orthologs #149. Best score 67 bits
Score difference with first non-orthologous sequence - C.brenneri:67 C.trachomatis:67

G0NXA5              	100.00%		O84210              	100.00%
G0M6Z0              	33.66%		O84208              	28.50%
Bootstrap support for G0NXA5 as seed ortholog is 100%.
Bootstrap support for O84210 as seed ortholog is 100%.

Group of orthologs #150. Best score 66 bits
Score difference with first non-orthologous sequence - C.brenneri:66 C.trachomatis:66

G0P4V6              	100.00%		P0CE06              	100.00%
Bootstrap support for G0P4V6 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #151. Best score 64 bits
Score difference with first non-orthologous sequence - C.brenneri:64 C.trachomatis:64

G0M743              	100.00%		O84379              	100.00%
G0PAQ4              	70.63%		
G0NRC2              	70.31%		
G0NTW4              	35.59%		
G0PLB0              	35.26%		
G0NWB3              	20.74%		
G0NIJ0              	19.54%		
G0PKU1              	19.54%		
G0PBM6              	19.43%		
G0NM44              	15.17%		
Bootstrap support for G0M743 as seed ortholog is 100%.
Bootstrap support for O84379 as seed ortholog is 100%.

Group of orthologs #152. Best score 63 bits
Score difference with first non-orthologous sequence - C.brenneri:1 C.trachomatis:63

G0PC62              	100.00%		O84822              	100.00%
G0PG66              	80.27%		
Bootstrap support for G0PC62 as seed ortholog is 50%.
Alternative seed ortholog is G0MPY7 (1 bits away from this cluster)
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #153. Best score 62 bits
Score difference with first non-orthologous sequence - C.brenneri:62 C.trachomatis:62

G0NG04              	100.00%		O84547              	100.00%
G0P903              	100.00%		
Bootstrap support for G0NG04 as seed ortholog is 100%.
Bootstrap support for G0P903 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #154. Best score 61 bits
Score difference with first non-orthologous sequence - C.brenneri:61 C.trachomatis:61

G0P255              	100.00%		P0A4C8              	100.00%
Bootstrap support for G0P255 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #155. Best score 59 bits
Score difference with first non-orthologous sequence - C.brenneri:59 C.trachomatis:59

G0MES9              	100.00%		O84221              	100.00%
Bootstrap support for G0MES9 as seed ortholog is 100%.
Bootstrap support for O84221 as seed ortholog is 100%.

Group of orthologs #156. Best score 58 bits
Score difference with first non-orthologous sequence - C.brenneri:58 C.trachomatis:58

G0NRG1              	100.00%		O84239              	100.00%
G0N5L3              	19.10%		
Bootstrap support for G0NRG1 as seed ortholog is 100%.
Bootstrap support for O84239 as seed ortholog is 100%.

Group of orthologs #157. Best score 58 bits
Score difference with first non-orthologous sequence - C.brenneri:58 C.trachomatis:58

G0MKR8              	100.00%		P36424              	100.00%
Bootstrap support for G0MKR8 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #158. Best score 58 bits
Score difference with first non-orthologous sequence - C.brenneri:58 C.trachomatis:58

G0P4V5              	100.00%		O84189              	100.00%
Bootstrap support for G0P4V5 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #159. Best score 57 bits
Score difference with first non-orthologous sequence - C.brenneri:57 C.trachomatis:57

G0N2R3              	100.00%		O84527              	100.00%
Bootstrap support for G0N2R3 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #160. Best score 55 bits
Score difference with first non-orthologous sequence - C.brenneri:55 C.trachomatis:55

G0P0V7              	100.00%		O84682              	100.00%
G0P0W2              	97.75%		
G0N520              	63.10%		
G0PL15              	57.14%		
Bootstrap support for G0P0V7 as seed ortholog is 100%.
Bootstrap support for O84682 as seed ortholog is 100%.

Group of orthologs #161. Best score 55 bits
Score difference with first non-orthologous sequence - C.brenneri:55 C.trachomatis:55

G0N4B2              	100.00%		O84395              	100.00%
G0MAW1              	73.80%		
G0MB65              	6.52%		
Bootstrap support for G0N4B2 as seed ortholog is 100%.
Bootstrap support for O84395 as seed ortholog is 100%.

Group of orthologs #162. Best score 54 bits
Score difference with first non-orthologous sequence - C.brenneri:2 C.trachomatis:54

G0PLH3              	100.00%		O84071              	100.00%
G0MXY9              	11.04%		O84421              	10.09%
                    	       		O84183              	5.36%
Bootstrap support for G0PLH3 as seed ortholog is 53%.
Alternative seed ortholog is G0P2Z9 (2 bits away from this cluster)
Bootstrap support for O84071 as seed ortholog is 100%.

Group of orthologs #163. Best score 53 bits
Score difference with first non-orthologous sequence - C.brenneri:53 C.trachomatis:53

G0P492              	100.00%		O84680              	100.00%
G0P1N5              	89.80%		
G0N7Q2              	22.53%		
G0NE56              	13.82%		
G0N913              	13.82%		
G0MGP0              	13.32%		
G0NKT2              	12.99%		
G0MER8              	12.01%		
G0N475              	12.01%		
G0MIM4              	12.01%		
G0MHB3              	11.68%		
G0MQR1              	11.68%		
G0M7R4              	10.69%		
G0MQQ0              	10.69%		
G0M7U5              	10.69%		
G0N8C2              	10.36%		
G0NCH3              	10.36%		
G0NYC1              	10.03%		
G0MKT1              	9.87%		
G0MLD1              	9.54%		
G0MQR2              	8.55%		
G0MQR3              	8.39%		
G0MQR5              	8.39%		
G0NJT8              	8.39%		
G0NFY5              	8.39%		
G0P8Y9              	8.39%		
G0P431              	8.22%		
G0NI47              	8.06%		
G0PEE5              	7.40%		
G0NJZ0              	7.24%		
G0NI49              	7.07%		
G0NBD7              	6.74%		
G0P3C7              	6.74%		
G0NFV4              	6.58%		
G0MQR6              	6.58%		
G0NMH5              	6.25%		
G0NWJ8              	6.25%		
G0MYP2              	6.09%		
G0NWI4              	6.09%		
G0PLR9              	5.92%		
G0MQR4              	5.92%		
G0PEF8              	5.59%		
G0MK96              	5.59%		
G0NWF8              	5.43%		
G0NZI0              	5.43%		
G0MV79              	5.43%		
G0PNH9              	5.43%		
G0N0M7              	5.10%		
G0N7I2              	5.10%		
Bootstrap support for G0P492 as seed ortholog is 100%.
Bootstrap support for O84680 as seed ortholog is 100%.

Group of orthologs #164. Best score 53 bits
Score difference with first non-orthologous sequence - C.brenneri:53 C.trachomatis:53

G0NDP8              	100.00%		P0CE04              	100.00%
Bootstrap support for G0NDP8 as seed ortholog is 100%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #165. Best score 52 bits
Score difference with first non-orthologous sequence - C.brenneri:52 C.trachomatis:52

G0MLZ9              	100.00%		O84507              	100.00%
G0PB98              	100.00%		
Bootstrap support for G0MLZ9 as seed ortholog is 100%.
Bootstrap support for G0PB98 as seed ortholog is 100%.
Bootstrap support for O84507 as seed ortholog is 100%.

Group of orthologs #166. Best score 52 bits
Score difference with first non-orthologous sequence - C.brenneri:52 C.trachomatis:52

G0PH25              	100.00%		O84032              	100.00%
Bootstrap support for G0PH25 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.

Group of orthologs #167. Best score 51 bits
Score difference with first non-orthologous sequence - C.brenneri:51 C.trachomatis:51

G0NFX4              	100.00%		P0CD80              	100.00%
G0PJB3              	100.00%		
Bootstrap support for G0NFX4 as seed ortholog is 100%.
Bootstrap support for G0PJB3 as seed ortholog is 100%.
Bootstrap support for P0CD80 as seed ortholog is 100%.

Group of orthologs #168. Best score 51 bits
Score difference with first non-orthologous sequence - C.brenneri:51 C.trachomatis:51

G0NCL2              	100.00%		P0CE02              	100.00%
Bootstrap support for G0NCL2 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #169. Best score 50 bits
Score difference with first non-orthologous sequence - C.brenneri:50 C.trachomatis:50

G0NYF3              	100.00%		P66370              	100.00%
Bootstrap support for G0NYF3 as seed ortholog is 100%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #170. Best score 49 bits
Score difference with first non-orthologous sequence - C.brenneri:49 C.trachomatis:49

G0NVB1              	100.00%		O84036              	100.00%
G0MM24              	98.99%		
G0PIL3              	5.97%		
G0PH89              	5.90%		
G0PBU1              	5.90%		
Bootstrap support for G0NVB1 as seed ortholog is 100%.
Bootstrap support for O84036 as seed ortholog is 100%.

Group of orthologs #171. Best score 48 bits
Score difference with first non-orthologous sequence - C.brenneri:48 C.trachomatis:48

G0M7D9              	100.00%		O84259              	100.00%
G0MRB2              	31.38%		
G0NFF4              	23.22%		
G0PDN4              	7.29%		
Bootstrap support for G0M7D9 as seed ortholog is 100%.
Bootstrap support for O84259 as seed ortholog is 100%.

Group of orthologs #172. Best score 48 bits
Score difference with first non-orthologous sequence - C.brenneri:48 C.trachomatis:48

G0NUN0              	100.00%		O84777              	100.00%
G0PI54              	100.00%		
Bootstrap support for G0NUN0 as seed ortholog is 100%.
Bootstrap support for G0PI54 as seed ortholog is 100%.
Bootstrap support for O84777 as seed ortholog is 100%.

Group of orthologs #173. Best score 47 bits
Score difference with first non-orthologous sequence - C.brenneri:47 C.trachomatis:47

G0M815              	100.00%		O84147              	100.00%
G0N8G4              	15.64%		
G0PNA9              	15.64%		
G0MWF8              	10.47%		
G0NL05              	8.56%		
G0NPW0              	7.82%		
G0MXB8              	7.82%		
G0M8N6              	7.40%		
G0N8I6              	6.24%		
G0P7Y8              	6.13%		
G0NRW5              	6.13%		
G0NP99              	5.50%		
G0MND5              	5.39%		
G0MYR8              	5.39%		
G0P1R4              	5.29%		
G0MFB8              	5.29%		
G0NQ46              	5.29%		
G0P182              	5.07%		
G0P7Q8              	5.07%		
Bootstrap support for G0M815 as seed ortholog is 100%.
Bootstrap support for O84147 as seed ortholog is 100%.

Group of orthologs #174. Best score 47 bits
Score difference with first non-orthologous sequence - C.brenneri:47 C.trachomatis:47

G0NKH9              	100.00%		O84127              	100.00%
G0P5B4              	100.00%		
Bootstrap support for G0NKH9 as seed ortholog is 100%.
Bootstrap support for G0P5B4 as seed ortholog is 100%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #175. Best score 47 bits
Score difference with first non-orthologous sequence - C.brenneri:5 C.trachomatis:47

G0NKQ6              	100.00%		O84689              	100.00%
Bootstrap support for G0NKQ6 as seed ortholog is 57%.
Alternative seed ortholog is G0MK79 (5 bits away from this cluster)
Bootstrap support for O84689 as seed ortholog is 100%.

Group of orthologs #176. Best score 44 bits
Score difference with first non-orthologous sequence - C.brenneri:44 C.trachomatis:44

G0NU72              	100.00%		P0CE05              	100.00%
Bootstrap support for G0NU72 as seed ortholog is 100%.
Bootstrap support for P0CE05 as seed ortholog is 100%.

Group of orthologs #177. Best score 43 bits
Score difference with first non-orthologous sequence - C.brenneri:43 C.trachomatis:43

G0P4X0              	100.00%		O84655              	100.00%
Bootstrap support for G0P4X0 as seed ortholog is 100%.
Bootstrap support for O84655 as seed ortholog is 100%.

Group of orthologs #178. Best score 42 bits
Score difference with first non-orthologous sequence - C.brenneri:42 C.trachomatis:42

G0NYL6              	100.00%		O84778              	100.00%
Bootstrap support for G0NYL6 as seed ortholog is 100%.
Bootstrap support for O84778 as seed ortholog is 100%.

Group of orthologs #179. Best score 41 bits
Score difference with first non-orthologous sequence - C.brenneri:41 C.trachomatis:41

G0M7I3              	100.00%		O84742              	100.00%
G0N6J3              	9.05%		
G0PGZ3              	8.42%		
G0PDU8              	7.79%		
G0NIP3              	7.58%		
G0NDW7              	5.47%		
G0NDS0              	5.26%		
Bootstrap support for G0M7I3 as seed ortholog is 100%.
Bootstrap support for O84742 as seed ortholog is 100%.

Group of orthologs #180. Best score 40 bits
Score difference with first non-orthologous sequence - C.brenneri:40 C.trachomatis:40

G0MKW4              	100.00%		O84408              	100.00%
Bootstrap support for G0MKW4 as seed ortholog is 100%.
Bootstrap support for O84408 as seed ortholog is 100%.