###################################
151 groups of orthologs
170 in-paralogs from B.bovis
153 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 805 bits
Score difference with first non-orthologous sequence - B.bovis:591 C.trachomatis:805

A7ANU1              	100.00%		O84022              	100.00%
Bootstrap support for A7ANU1 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 739 bits
Score difference with first non-orthologous sequence - B.bovis:249 C.trachomatis:172

A7ATV4              	100.00%		O84115              	100.00%
Bootstrap support for A7ATV4 as seed ortholog is 100%.
Bootstrap support for O84115 as seed ortholog is 98%.

Group of orthologs #3. Best score 695 bits
Score difference with first non-orthologous sequence - B.bovis:181 C.trachomatis:695

A7AVW9              	100.00%		P17821              	100.00%
Bootstrap support for A7AVW9 as seed ortholog is 100%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #4. Best score 601 bits
Score difference with first non-orthologous sequence - B.bovis:139 C.trachomatis:601

A7AQL3              	100.00%		O84444              	100.00%
Bootstrap support for A7AQL3 as seed ortholog is 99%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #5. Best score 575 bits
Score difference with first non-orthologous sequence - B.bovis:575 C.trachomatis:575

A7ANM9              	100.00%		O84348              	100.00%
Bootstrap support for A7ANM9 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #6. Best score 540 bits
Score difference with first non-orthologous sequence - B.bovis:392 C.trachomatis:540

A7APB5              	100.00%		O84304              	100.00%
Bootstrap support for A7APB5 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #7. Best score 519 bits
Score difference with first non-orthologous sequence - B.bovis:337 C.trachomatis:519

A7AQ93              	100.00%		O84067              	100.00%
Bootstrap support for A7AQ93 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #8. Best score 503 bits
Score difference with first non-orthologous sequence - B.bovis:87 C.trachomatis:323

A7AR66              	100.00%		P0C0Z7              	100.00%
Bootstrap support for A7AR66 as seed ortholog is 98%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #9. Best score 502 bits
Score difference with first non-orthologous sequence - B.bovis:502 C.trachomatis:502

A7ARK3              	100.00%		O84585              	100.00%
Bootstrap support for A7ARK3 as seed ortholog is 100%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #10. Best score 495 bits
Score difference with first non-orthologous sequence - B.bovis:495 C.trachomatis:495

A7AWZ0              	100.00%		O84834              	100.00%
Bootstrap support for A7AWZ0 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #11. Best score 492 bits
Score difference with first non-orthologous sequence - B.bovis:492 C.trachomatis:492

A7AVK8              	100.00%		O84211              	100.00%
Bootstrap support for A7AVK8 as seed ortholog is 100%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #12. Best score 460 bits
Score difference with first non-orthologous sequence - B.bovis:460 C.trachomatis:460

A7AQ83              	100.00%		O84754              	100.00%
Bootstrap support for A7AQ83 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #13. Best score 453 bits
Score difference with first non-orthologous sequence - B.bovis:40 C.trachomatis:453

A7AMD3              	100.00%		P0CD71              	100.00%
Bootstrap support for A7AMD3 as seed ortholog is 77%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #14. Best score 448 bits
Score difference with first non-orthologous sequence - B.bovis:448 C.trachomatis:448

A7AW62              	100.00%		O84057              	100.00%
Bootstrap support for A7AW62 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #15. Best score 429 bits
Score difference with first non-orthologous sequence - B.bovis:429 C.trachomatis:429

A7AUN2              	100.00%		O84060              	100.00%
Bootstrap support for A7AUN2 as seed ortholog is 100%.
Bootstrap support for O84060 as seed ortholog is 100%.

Group of orthologs #16. Best score 420 bits
Score difference with first non-orthologous sequence - B.bovis:420 C.trachomatis:282

A7ASL8              	100.00%		O84193              	100.00%
Bootstrap support for A7ASL8 as seed ortholog is 100%.
Bootstrap support for O84193 as seed ortholog is 99%.

Group of orthologs #17. Best score 394 bits
Score difference with first non-orthologous sequence - B.bovis:234 C.trachomatis:394

A7ATH2              	100.00%		O84460              	100.00%
Bootstrap support for A7ATH2 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #18. Best score 392 bits
Score difference with first non-orthologous sequence - B.bovis:392 C.trachomatis:392

A7AU74              	100.00%		Q59321              	100.00%
Bootstrap support for A7AU74 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #19. Best score 369 bits
Score difference with first non-orthologous sequence - B.bovis:369 C.trachomatis:369

A7AMT4              	100.00%		P0CD73              	100.00%
Bootstrap support for A7AMT4 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #20. Best score 368 bits
Score difference with first non-orthologous sequence - B.bovis:368 C.trachomatis:368

A7ASY6              	100.00%		O84848              	100.00%
Bootstrap support for A7ASY6 as seed ortholog is 100%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #21. Best score 367 bits
Score difference with first non-orthologous sequence - B.bovis:367 C.trachomatis:367

A7AP71              	100.00%		O84591              	100.00%
Bootstrap support for A7AP71 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #22. Best score 361 bits
Score difference with first non-orthologous sequence - B.bovis:361 C.trachomatis:361

A7AVY4              	100.00%		O84192              	100.00%
Bootstrap support for A7AVY4 as seed ortholog is 100%.
Bootstrap support for O84192 as seed ortholog is 100%.

Group of orthologs #23. Best score 359 bits
Score difference with first non-orthologous sequence - B.bovis:359 C.trachomatis:359

A7AP91              	100.00%		O84310              	100.00%
Bootstrap support for A7AP91 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #24. Best score 339 bits
Score difference with first non-orthologous sequence - B.bovis:339 C.trachomatis:339

A7ATE8              	100.00%		P0CE13              	100.00%
Bootstrap support for A7ATE8 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #25. Best score 314 bits
Score difference with first non-orthologous sequence - B.bovis:314 C.trachomatis:314

A7AP54              	100.00%		O84829              	100.00%
Bootstrap support for A7AP54 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #26. Best score 312 bits
Score difference with first non-orthologous sequence - B.bovis:80 C.trachomatis:312

A7AVN4              	100.00%		O84786              	100.00%
Bootstrap support for A7AVN4 as seed ortholog is 96%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #27. Best score 306 bits
Score difference with first non-orthologous sequence - B.bovis:306 C.trachomatis:306

A7AMP1              	100.00%		O84335              	100.00%
Bootstrap support for A7AMP1 as seed ortholog is 100%.
Bootstrap support for O84335 as seed ortholog is 100%.

Group of orthologs #28. Best score 294 bits
Score difference with first non-orthologous sequence - B.bovis:294 C.trachomatis:294

A7AWJ0              	100.00%		O84316              	100.00%
A7AP17              	12.29%		
A7ARZ5              	7.80%		
Bootstrap support for A7AWJ0 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #29. Best score 293 bits
Score difference with first non-orthologous sequence - B.bovis:293 C.trachomatis:293

A7ARJ2              	100.00%		P0CD78              	100.00%
Bootstrap support for A7ARJ2 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #30. Best score 281 bits
Score difference with first non-orthologous sequence - B.bovis:281 C.trachomatis:281

A7AME9              	100.00%		O84867              	100.00%
Bootstrap support for A7AME9 as seed ortholog is 100%.
Bootstrap support for O84867 as seed ortholog is 100%.

Group of orthologs #31. Best score 276 bits
Score difference with first non-orthologous sequence - B.bovis:135 C.trachomatis:234

A7ARA6              	100.00%		O84561              	100.00%
Bootstrap support for A7ARA6 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #32. Best score 259 bits
Score difference with first non-orthologous sequence - B.bovis:196 C.trachomatis:259

A7AMK2              	100.00%		O84094              	100.00%
Bootstrap support for A7AMK2 as seed ortholog is 100%.
Bootstrap support for O84094 as seed ortholog is 100%.

Group of orthologs #33. Best score 257 bits
Score difference with first non-orthologous sequence - B.bovis:166 C.trachomatis:110

A7AQM6              	100.00%		O84058              	100.00%
Bootstrap support for A7AQM6 as seed ortholog is 99%.
Bootstrap support for O84058 as seed ortholog is 99%.

Group of orthologs #34. Best score 257 bits
Score difference with first non-orthologous sequence - B.bovis:257 C.trachomatis:257

A7ASS4              	100.00%		P0CD72              	100.00%
Bootstrap support for A7ASS4 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #35. Best score 255 bits
Score difference with first non-orthologous sequence - B.bovis:255 C.trachomatis:255

A7AQX6              	100.00%		O84439              	100.00%
Bootstrap support for A7AQX6 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #36. Best score 248 bits
Score difference with first non-orthologous sequence - B.bovis:248 C.trachomatis:248

A7ARA8              	100.00%		O84596              	100.00%
Bootstrap support for A7ARA8 as seed ortholog is 100%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #37. Best score 247 bits
Score difference with first non-orthologous sequence - B.bovis:92 C.trachomatis:247

A7ANX7              	100.00%		P0CE21              	100.00%
Bootstrap support for A7ANX7 as seed ortholog is 97%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #38. Best score 245 bits
Score difference with first non-orthologous sequence - B.bovis:181 C.trachomatis:245

A7AT45              	100.00%		O84309              	100.00%
Bootstrap support for A7AT45 as seed ortholog is 99%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #39. Best score 243 bits
Score difference with first non-orthologous sequence - B.bovis:243 C.trachomatis:42

A7ARK4              	100.00%		O84344              	100.00%
Bootstrap support for A7ARK4 as seed ortholog is 100%.
Bootstrap support for O84344 as seed ortholog is 89%.

Group of orthologs #40. Best score 238 bits
Score difference with first non-orthologous sequence - B.bovis:238 C.trachomatis:238

A7AQE8              	100.00%		O84066              	100.00%
Bootstrap support for A7AQE8 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #41. Best score 237 bits
Score difference with first non-orthologous sequence - B.bovis:56 C.trachomatis:237

A7ATK7              	100.00%		O84098              	100.00%
Bootstrap support for A7ATK7 as seed ortholog is 88%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #42. Best score 234 bits
Score difference with first non-orthologous sequence - B.bovis:234 C.trachomatis:234

A7AM79              	100.00%		P0CE09              	100.00%
A7ATA0              	19.00%		
A7AT93              	5.87%		
Bootstrap support for A7AM79 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #43. Best score 234 bits
Score difference with first non-orthologous sequence - B.bovis:234 C.trachomatis:234

A7AS83              	100.00%		O84828              	100.00%
Bootstrap support for A7AS83 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #44. Best score 225 bits
Score difference with first non-orthologous sequence - B.bovis:2 C.trachomatis:225

A7AWU6              	100.00%		O84797              	100.00%
Bootstrap support for A7AWU6 as seed ortholog is 57%.
Alternative seed ortholog is A7AWN5 (2 bits away from this cluster)
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #45. Best score 218 bits
Score difference with first non-orthologous sequence - B.bovis:218 C.trachomatis:218

A7AU33              	100.00%		O84831              	100.00%
Bootstrap support for A7AU33 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #46. Best score 217 bits
Score difference with first non-orthologous sequence - B.bovis:217 C.trachomatis:217

A7APZ2              	100.00%		O84074              	100.00%
Bootstrap support for A7APZ2 as seed ortholog is 100%.
Bootstrap support for O84074 as seed ortholog is 100%.

Group of orthologs #47. Best score 209 bits
Score difference with first non-orthologous sequence - B.bovis:209 C.trachomatis:209

A7ARV6              	100.00%		O84028              	100.00%
Bootstrap support for A7ARV6 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 100%.

Group of orthologs #48. Best score 209 bits
Score difference with first non-orthologous sequence - B.bovis:209 C.trachomatis:209

A7AU97              	100.00%		O84698              	100.00%
Bootstrap support for A7AU97 as seed ortholog is 100%.
Bootstrap support for O84698 as seed ortholog is 100%.

Group of orthologs #49. Best score 207 bits
Score difference with first non-orthologous sequence - B.bovis:120 C.trachomatis:207

A7ARD2              	100.00%		O84530              	100.00%
Bootstrap support for A7ARD2 as seed ortholog is 99%.
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #50. Best score 206 bits
Score difference with first non-orthologous sequence - B.bovis:52 C.trachomatis:206

A7AR63              	100.00%		O84859              	100.00%
Bootstrap support for A7AR63 as seed ortholog is 95%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #51. Best score 205 bits
Score difference with first non-orthologous sequence - B.bovis:57 C.trachomatis:205

A7APW7              	100.00%		O84345              	100.00%
Bootstrap support for A7APW7 as seed ortholog is 88%.
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #52. Best score 205 bits
Score difference with first non-orthologous sequence - B.bovis:205 C.trachomatis:205

A7AUZ9              	100.00%		O84823              	100.00%
Bootstrap support for A7AUZ9 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #53. Best score 200 bits
Score difference with first non-orthologous sequence - B.bovis:200 C.trachomatis:200

A7AVV5              	100.00%		O84693              	100.00%
Bootstrap support for A7AVV5 as seed ortholog is 100%.
Bootstrap support for O84693 as seed ortholog is 100%.

Group of orthologs #54. Best score 198 bits
Score difference with first non-orthologous sequence - B.bovis:198 C.trachomatis:198

A7ANQ0              	100.00%		O84613              	100.00%
Bootstrap support for A7ANQ0 as seed ortholog is 100%.
Bootstrap support for O84613 as seed ortholog is 100%.

Group of orthologs #55. Best score 198 bits
Score difference with first non-orthologous sequence - B.bovis:198 C.trachomatis:198

A7ATY9              	100.00%		O84049              	100.00%
Bootstrap support for A7ATY9 as seed ortholog is 100%.
Bootstrap support for O84049 as seed ortholog is 100%.

Group of orthologs #56. Best score 190 bits
Score difference with first non-orthologous sequence - B.bovis:17 C.trachomatis:190

A7AU40              	100.00%		O84608              	100.00%
Bootstrap support for A7AU40 as seed ortholog is 71%.
Alternative seed ortholog is A7AWV3 (17 bits away from this cluster)
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #57. Best score 179 bits
Score difference with first non-orthologous sequence - B.bovis:179 C.trachomatis:179

A7ANM3              	100.00%		O84289              	100.00%
Bootstrap support for A7ANM3 as seed ortholog is 100%.
Bootstrap support for O84289 as seed ortholog is 100%.

Group of orthologs #58. Best score 175 bits
Score difference with first non-orthologous sequence - B.bovis:175 C.trachomatis:175

A7AQ19              	100.00%		P36431              	100.00%
Bootstrap support for A7AQ19 as seed ortholog is 100%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #59. Best score 172 bits
Score difference with first non-orthologous sequence - B.bovis:16 C.trachomatis:172

A7AVA5              	100.00%		O84734              	100.00%
Bootstrap support for A7AVA5 as seed ortholog is 67%.
Alternative seed ortholog is A7ARB1 (16 bits away from this cluster)
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #60. Best score 168 bits
Score difference with first non-orthologous sequence - B.bovis:168 C.trachomatis:168

A7ANL8              	100.00%		O84630              	100.00%
Bootstrap support for A7ANL8 as seed ortholog is 100%.
Bootstrap support for O84630 as seed ortholog is 100%.

Group of orthologs #61. Best score 167 bits
Score difference with first non-orthologous sequence - B.bovis:167 C.trachomatis:167

A7AQ14              	100.00%		O84642              	100.00%
Bootstrap support for A7AQ14 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #62. Best score 166 bits
Score difference with first non-orthologous sequence - B.bovis:166 C.trachomatis:166

A7APP8              	100.00%		O84006              	100.00%
Bootstrap support for A7APP8 as seed ortholog is 100%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #63. Best score 164 bits
Score difference with first non-orthologous sequence - B.bovis:29 C.trachomatis:164

A7AQX5              	100.00%		O84676              	100.00%
                    	       		O84722              	12.34%
Bootstrap support for A7AQX5 as seed ortholog is 81%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #64. Best score 163 bits
Score difference with first non-orthologous sequence - B.bovis:163 C.trachomatis:163

A7ANB9              	100.00%		O84266              	100.00%
A7AQ35              	17.98%		
Bootstrap support for A7ANB9 as seed ortholog is 100%.
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #65. Best score 163 bits
Score difference with first non-orthologous sequence - B.bovis:163 C.trachomatis:163

A7AS98              	100.00%		O84451              	100.00%
Bootstrap support for A7AS98 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #66. Best score 158 bits
Score difference with first non-orthologous sequence - B.bovis:158 C.trachomatis:158

A7AW53              	100.00%		O84035              	100.00%
A7AR50              	5.65%		
Bootstrap support for A7AW53 as seed ortholog is 100%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #67. Best score 158 bits
Score difference with first non-orthologous sequence - B.bovis:158 C.trachomatis:158

A7AT20              	100.00%		O84332              	100.00%
Bootstrap support for A7AT20 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #68. Best score 157 bits
Score difference with first non-orthologous sequence - B.bovis:157 C.trachomatis:157

A7AT10              	100.00%		O84638              	100.00%
Bootstrap support for A7AT10 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #69. Best score 156 bits
Score difference with first non-orthologous sequence - B.bovis:156 C.trachomatis:156

A7AQY3              	100.00%		O84402              	100.00%
Bootstrap support for A7AQY3 as seed ortholog is 100%.
Bootstrap support for O84402 as seed ortholog is 100%.

Group of orthologs #70. Best score 156 bits
Score difference with first non-orthologous sequence - B.bovis:6 C.trachomatis:37

A7ATV1              	100.00%		O84712              	100.00%
Bootstrap support for A7ATV1 as seed ortholog is 59%.
Alternative seed ortholog is A7AQC2 (6 bits away from this cluster)
Bootstrap support for O84712 as seed ortholog is 94%.

Group of orthologs #71. Best score 155 bits
Score difference with first non-orthologous sequence - B.bovis:155 C.trachomatis:155

A7AS95              	100.00%		O84835              	100.00%
Bootstrap support for A7AS95 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #72. Best score 149 bits
Score difference with first non-orthologous sequence - B.bovis:149 C.trachomatis:149

A7AXC1              	100.00%		O84704              	100.00%
Bootstrap support for A7AXC1 as seed ortholog is 100%.
Bootstrap support for O84704 as seed ortholog is 100%.

Group of orthologs #73. Best score 148 bits
Score difference with first non-orthologous sequence - B.bovis:81 C.trachomatis:148

A7ARJ9              	100.00%		O84352              	100.00%
Bootstrap support for A7ARJ9 as seed ortholog is 91%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #74. Best score 142 bits
Score difference with first non-orthologous sequence - B.bovis:142 C.trachomatis:142

A7AV63              	100.00%		O84274              	100.00%
Bootstrap support for A7AV63 as seed ortholog is 100%.
Bootstrap support for O84274 as seed ortholog is 100%.

Group of orthologs #75. Best score 141 bits
Score difference with first non-orthologous sequence - B.bovis:10 C.trachomatis:141

A7AM26              	100.00%		O84423              	100.00%
Bootstrap support for A7AM26 as seed ortholog is 67%.
Alternative seed ortholog is A7AQJ3 (10 bits away from this cluster)
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #76. Best score 138 bits
Score difference with first non-orthologous sequence - B.bovis:138 C.trachomatis:138

A7ATN7              	100.00%		O84465              	100.00%
Bootstrap support for A7ATN7 as seed ortholog is 100%.
Bootstrap support for O84465 as seed ortholog is 100%.

Group of orthologs #77. Best score 137 bits
Score difference with first non-orthologous sequence - B.bovis:46 C.trachomatis:137

A7AVR4              	100.00%		O84130              	100.00%
Bootstrap support for A7AVR4 as seed ortholog is 92%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #78. Best score 136 bits
Score difference with first non-orthologous sequence - B.bovis:136 C.trachomatis:136

A7AUB0              	100.00%		O84732              	100.00%
A7AS37              	13.23%		
Bootstrap support for A7AUB0 as seed ortholog is 100%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #79. Best score 135 bits
Score difference with first non-orthologous sequence - B.bovis:135 C.trachomatis:135

A7ASC5              	100.00%		O84579              	100.00%
Bootstrap support for A7ASC5 as seed ortholog is 100%.
Bootstrap support for O84579 as seed ortholog is 100%.

Group of orthologs #80. Best score 135 bits
Score difference with first non-orthologous sequence - B.bovis:135 C.trachomatis:135

O15904              	100.00%		O84296              	100.00%
Bootstrap support for O15904 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #81. Best score 134 bits
Score difference with first non-orthologous sequence - B.bovis:134 C.trachomatis:134

A7AP62              	100.00%		O84727              	100.00%
Bootstrap support for A7AP62 as seed ortholog is 100%.
Bootstrap support for O84727 as seed ortholog is 100%.

Group of orthologs #82. Best score 132 bits
Score difference with first non-orthologous sequence - B.bovis:132 C.trachomatis:132

A7AUU1              	100.00%		O84557              	100.00%
Bootstrap support for A7AUU1 as seed ortholog is 100%.
Bootstrap support for O84557 as seed ortholog is 100%.

Group of orthologs #83. Best score 125 bits
Score difference with first non-orthologous sequence - B.bovis:125 C.trachomatis:125

A7AWC0              	100.00%		O84260              	100.00%
Bootstrap support for A7AWC0 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 100%.

Group of orthologs #84. Best score 123 bits
Score difference with first non-orthologous sequence - B.bovis:123 C.trachomatis:123

A7AR07              	100.00%		O84026              	100.00%
Bootstrap support for A7AR07 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 100%.

Group of orthologs #85. Best score 122 bits
Score difference with first non-orthologous sequence - B.bovis:122 C.trachomatis:122

A7AWW1              	100.00%		O84709              	100.00%
Bootstrap support for A7AWW1 as seed ortholog is 100%.
Bootstrap support for O84709 as seed ortholog is 100%.

Group of orthologs #86. Best score 120 bits
Score difference with first non-orthologous sequence - B.bovis:75 C.trachomatis:120

A7APE9              	100.00%		O84589              	100.00%
Bootstrap support for A7APE9 as seed ortholog is 98%.
Bootstrap support for O84589 as seed ortholog is 100%.

Group of orthologs #87. Best score 115 bits
Score difference with first non-orthologous sequence - B.bovis:115 C.trachomatis:115

A7AUF5              	100.00%		O84033              	100.00%
Bootstrap support for A7AUF5 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #88. Best score 114 bits
Score difference with first non-orthologous sequence - B.bovis:4 C.trachomatis:114

A7AVE0              	100.00%		O84546              	100.00%
Bootstrap support for A7AVE0 as seed ortholog is 55%.
Alternative seed ortholog is A7AT14 (4 bits away from this cluster)
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #89. Best score 113 bits
Score difference with first non-orthologous sequence - B.bovis:113 C.trachomatis:113

A7AWL2              	100.00%		O84720              	100.00%
Bootstrap support for A7AWL2 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #90. Best score 110 bits
Score difference with first non-orthologous sequence - B.bovis:110 C.trachomatis:110

A7AMD4              	100.00%		O84649              	100.00%
A7AST5              	13.53%		
Bootstrap support for A7AMD4 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #91. Best score 110 bits
Score difference with first non-orthologous sequence - B.bovis:110 C.trachomatis:110

A7ASC9              	100.00%		O84065              	100.00%
Bootstrap support for A7ASC9 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #92. Best score 109 bits
Score difference with first non-orthologous sequence - B.bovis:109 C.trachomatis:109

A7ANF8              	100.00%		O84508              	100.00%
Bootstrap support for A7ANF8 as seed ortholog is 100%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #93. Best score 107 bits
Score difference with first non-orthologous sequence - B.bovis:107 C.trachomatis:107

A7AMM8              	100.00%		O84215              	100.00%
Bootstrap support for A7AMM8 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #94. Best score 106 bits
Score difference with first non-orthologous sequence - B.bovis:106 C.trachomatis:106

A7AXC0              	100.00%		O84007              	100.00%
Bootstrap support for A7AXC0 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #95. Best score 102 bits
Score difference with first non-orthologous sequence - B.bovis:102 C.trachomatis:102

A7ATN0              	100.00%		O84686              	100.00%
Bootstrap support for A7ATN0 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #96. Best score 97 bits
Score difference with first non-orthologous sequence - B.bovis:97 C.trachomatis:97

A7AVK2              	100.00%		O84456              	100.00%
Bootstrap support for A7AVK2 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #97. Best score 97 bits
Score difference with first non-orthologous sequence - B.bovis:97 C.trachomatis:97

A7AW91              	100.00%		O84507              	100.00%
Bootstrap support for A7AW91 as seed ortholog is 100%.
Bootstrap support for O84507 as seed ortholog is 100%.

Group of orthologs #98. Best score 96 bits
Score difference with first non-orthologous sequence - B.bovis:49 C.trachomatis:96

A7AXG1              	100.00%		P66370              	100.00%
Bootstrap support for A7AXG1 as seed ortholog is 98%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #99. Best score 95 bits
Score difference with first non-orthologous sequence - B.bovis:28 C.trachomatis:95

A7APB3              	100.00%		O84578              	100.00%
Bootstrap support for A7APB3 as seed ortholog is 77%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #100. Best score 93 bits
Score difference with first non-orthologous sequence - B.bovis:93 C.trachomatis:93

A7APL3              	100.00%		O84391              	100.00%
Bootstrap support for A7APL3 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #101. Best score 92 bits
Score difference with first non-orthologous sequence - B.bovis:46 C.trachomatis:92

A7APH5              	100.00%		O84435              	100.00%
Bootstrap support for A7APH5 as seed ortholog is 90%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #102. Best score 92 bits
Score difference with first non-orthologous sequence - B.bovis:92 C.trachomatis:92

A7AQS0              	100.00%		O84595              	100.00%
Bootstrap support for A7AQS0 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #103. Best score 91 bits
Score difference with first non-orthologous sequence - B.bovis:91 C.trachomatis:91

A7APL5              	100.00%		O84200              	100.00%
Bootstrap support for A7APL5 as seed ortholog is 100%.
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #104. Best score 91 bits
Score difference with first non-orthologous sequence - B.bovis:25 C.trachomatis:91

A7AT08              	100.00%		O84358              	100.00%
Bootstrap support for A7AT08 as seed ortholog is 81%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #105. Best score 91 bits
Score difference with first non-orthologous sequence - B.bovis:91 C.trachomatis:91

A7AXG8              	100.00%		P0CD83              	100.00%
Bootstrap support for A7AXG8 as seed ortholog is 100%.
Bootstrap support for P0CD83 as seed ortholog is 100%.

Group of orthologs #106. Best score 86 bits
Score difference with first non-orthologous sequence - B.bovis:86 C.trachomatis:86

A7ANK1              	100.00%		O84096              	100.00%
Bootstrap support for A7ANK1 as seed ortholog is 100%.
Bootstrap support for O84096 as seed ortholog is 100%.

Group of orthologs #107. Best score 86 bits
Score difference with first non-orthologous sequence - B.bovis:86 C.trachomatis:86

A7AP96              	100.00%		O84247              	100.00%
Bootstrap support for A7AP96 as seed ortholog is 100%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #108. Best score 82 bits
Score difference with first non-orthologous sequence - B.bovis:82 C.trachomatis:82

A7AQA5              	100.00%		O84390              	100.00%
Bootstrap support for A7AQA5 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #109. Best score 80 bits
Score difference with first non-orthologous sequence - B.bovis:80 C.trachomatis:80

A7AM49              	100.00%		O84822              	100.00%
Bootstrap support for A7AM49 as seed ortholog is 100%.
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #110. Best score 79 bits
Score difference with first non-orthologous sequence - B.bovis:79 C.trachomatis:79

A7AQ79              	100.00%		O84665              	100.00%
                    	       		O84108              	5.91%
Bootstrap support for A7AQ79 as seed ortholog is 100%.
Bootstrap support for O84665 as seed ortholog is 100%.

Group of orthologs #111. Best score 79 bits
Score difference with first non-orthologous sequence - B.bovis:79 C.trachomatis:79

A7AM28              	100.00%		O84851              	100.00%
Bootstrap support for A7AM28 as seed ortholog is 100%.
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #112. Best score 79 bits
Score difference with first non-orthologous sequence - B.bovis:79 C.trachomatis:79

A7AQM0              	100.00%		O84650              	100.00%
Bootstrap support for A7AQM0 as seed ortholog is 100%.
Bootstrap support for O84650 as seed ortholog is 100%.

Group of orthologs #113. Best score 77 bits
Score difference with first non-orthologous sequence - B.bovis:77 C.trachomatis:77

A7AQW2              	100.00%		O84127              	100.00%
A7AQV4              	42.51%		
Bootstrap support for A7AQW2 as seed ortholog is 100%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #114. Best score 77 bits
Score difference with first non-orthologous sequence - B.bovis:77 C.trachomatis:77

A7APA8              	100.00%		O84533              	100.00%
Bootstrap support for A7APA8 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #115. Best score 77 bits
Score difference with first non-orthologous sequence - B.bovis:77 C.trachomatis:77

A7AUW3              	100.00%		O84599              	100.00%
Bootstrap support for A7AUW3 as seed ortholog is 100%.
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #116. Best score 74 bits
Score difference with first non-orthologous sequence - B.bovis:74 C.trachomatis:74

A7ATE5              	100.00%		O84338              	100.00%
A7AMS6              	22.50%		
A7AVJ2              	19.38%		
Bootstrap support for A7ATE5 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #117. Best score 74 bits
Score difference with first non-orthologous sequence - B.bovis:74 C.trachomatis:74

A7ANE7              	100.00%		O84547              	100.00%
Bootstrap support for A7ANE7 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #118. Best score 74 bits
Score difference with first non-orthologous sequence - B.bovis:7 C.trachomatis:74

A7ATQ9              	100.00%		O84544              	100.00%
Bootstrap support for A7ATQ9 as seed ortholog is 65%.
Alternative seed ortholog is A7AQ22 (7 bits away from this cluster)
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #119. Best score 74 bits
Score difference with first non-orthologous sequence - B.bovis:74 C.trachomatis:74

A7AUE2              	100.00%		O84864              	100.00%
Bootstrap support for A7AUE2 as seed ortholog is 100%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #120. Best score 72 bits
Score difference with first non-orthologous sequence - B.bovis:72 C.trachomatis:72

A7ARE6              	100.00%		O84494              	100.00%
Bootstrap support for A7ARE6 as seed ortholog is 100%.
Bootstrap support for O84494 as seed ortholog is 100%.

Group of orthologs #121. Best score 71 bits
Score difference with first non-orthologous sequence - B.bovis:71 C.trachomatis:71

A7AQJ0              	100.00%		O84719              	100.00%
Bootstrap support for A7AQJ0 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #122. Best score 69 bits
Score difference with first non-orthologous sequence - B.bovis:69 C.trachomatis:69

A7AM23              	100.00%		O84221              	100.00%
Bootstrap support for A7AM23 as seed ortholog is 100%.
Bootstrap support for O84221 as seed ortholog is 100%.

Group of orthologs #123. Best score 68 bits
Score difference with first non-orthologous sequence - B.bovis:68 C.trachomatis:68

A7AVU1              	100.00%		O84680              	100.00%
A7ANH6              	26.01%		
A7AUV3              	14.61%		
A7API5              	9.02%		
A7AMV1              	6.32%		
A7ANK3              	6.22%		
A7ATY2              	5.49%		
A7AQU4              	5.18%		
Bootstrap support for A7AVU1 as seed ortholog is 100%.
Bootstrap support for O84680 as seed ortholog is 100%.

Group of orthologs #124. Best score 68 bits
Score difference with first non-orthologous sequence - B.bovis:68 C.trachomatis:68

A7AS15              	100.00%		O84321              	100.00%
Bootstrap support for A7AS15 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #125. Best score 67 bits
Score difference with first non-orthologous sequence - B.bovis:67 C.trachomatis:67

A7AQS8              	100.00%		O84128              	100.00%
Bootstrap support for A7AQS8 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #126. Best score 67 bits
Score difference with first non-orthologous sequence - B.bovis:67 C.trachomatis:67

A7ATL0              	100.00%		P0CE03              	100.00%
Bootstrap support for A7ATL0 as seed ortholog is 100%.
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #127. Best score 67 bits
Score difference with first non-orthologous sequence - B.bovis:67 C.trachomatis:67

A7AVQ2              	100.00%		O84441              	100.00%
Bootstrap support for A7AVQ2 as seed ortholog is 100%.
Bootstrap support for O84441 as seed ortholog is 100%.

Group of orthologs #128. Best score 67 bits
Score difference with first non-orthologous sequence - B.bovis:67 C.trachomatis:67

A7AWG8              	100.00%		O84703              	100.00%
Bootstrap support for A7AWG8 as seed ortholog is 100%.
Bootstrap support for O84703 as seed ortholog is 100%.

Group of orthologs #129. Best score 67 bits
Score difference with first non-orthologous sequence - B.bovis:67 C.trachomatis:67

A7AWV1              	100.00%		P0C0Z8              	100.00%
Bootstrap support for A7AWV1 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #130. Best score 66 bits
Score difference with first non-orthologous sequence - B.bovis:66 C.trachomatis:66

A7AQH5              	100.00%		P18584              	100.00%
Bootstrap support for A7AQH5 as seed ortholog is 100%.
Bootstrap support for P18584 as seed ortholog is 100%.

Group of orthologs #131. Best score 65 bits
Score difference with first non-orthologous sequence - B.bovis:20 C.trachomatis:65

A7ANR6              	100.00%		P0CD81              	100.00%
Bootstrap support for A7ANR6 as seed ortholog is 82%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #132. Best score 64 bits
Score difference with first non-orthologous sequence - B.bovis:7 C.trachomatis:64

A7ANH8              	100.00%		O84469              	100.00%
Bootstrap support for A7ANH8 as seed ortholog is 56%.
Alternative seed ortholog is A7ASP1 (7 bits away from this cluster)
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #133. Best score 64 bits
Score difference with first non-orthologous sequence - B.bovis:64 C.trachomatis:64

A7ARL1              	100.00%		P36424              	100.00%
Bootstrap support for A7ARL1 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #134. Best score 62 bits
Score difference with first non-orthologous sequence - B.bovis:62 C.trachomatis:62

A7ANX9              	100.00%		P38004              	100.00%
Bootstrap support for A7ANX9 as seed ortholog is 100%.
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #135. Best score 59 bits
Score difference with first non-orthologous sequence - B.bovis:59 C.trachomatis:59

A7ARA7              	100.00%		P66123              	100.00%
Bootstrap support for A7ARA7 as seed ortholog is 100%.
Bootstrap support for P66123 as seed ortholog is 100%.

Group of orthologs #136. Best score 58 bits
Score difference with first non-orthologous sequence - B.bovis:58 C.trachomatis:58

A7APD7              	100.00%		O84478              	100.00%
Bootstrap support for A7APD7 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #137. Best score 58 bits
Score difference with first non-orthologous sequence - B.bovis:58 C.trachomatis:58

A7AT61              	100.00%		O84527              	100.00%
Bootstrap support for A7AT61 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #138. Best score 57 bits
Score difference with first non-orthologous sequence - B.bovis:57 C.trachomatis:57

A7ANI5              	100.00%		O84842              	100.00%
Bootstrap support for A7ANI5 as seed ortholog is 100%.
Bootstrap support for O84842 as seed ortholog is 100%.

Group of orthologs #139. Best score 56 bits
Score difference with first non-orthologous sequence - B.bovis:56 C.trachomatis:56

A7ARZ3              	100.00%		O84499              	100.00%
Bootstrap support for A7ARZ3 as seed ortholog is 100%.
Bootstrap support for O84499 as seed ortholog is 100%.

Group of orthologs #140. Best score 56 bits
Score difference with first non-orthologous sequence - B.bovis:56 C.trachomatis:56

A7AUL2              	100.00%		O84496              	100.00%
Bootstrap support for A7AUL2 as seed ortholog is 100%.
Bootstrap support for O84496 as seed ortholog is 100%.

Group of orthologs #141. Best score 56 bits
Score difference with first non-orthologous sequence - B.bovis:56 C.trachomatis:56

A7AXB0              	100.00%		O84032              	100.00%
Bootstrap support for A7AXB0 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.

Group of orthologs #142. Best score 54 bits
Score difference with first non-orthologous sequence - B.bovis:54 C.trachomatis:54

A7AVX4              	100.00%		P0A4C8              	100.00%
Bootstrap support for A7AVX4 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #143. Best score 53 bits
Score difference with first non-orthologous sequence - B.bovis:53 C.trachomatis:53

A7AX44              	100.00%		P0CE06              	100.00%
Bootstrap support for A7AX44 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #144. Best score 51 bits
Score difference with first non-orthologous sequence - B.bovis:51 C.trachomatis:51

A7AN22              	100.00%		P0CD84              	100.00%
Bootstrap support for A7AN22 as seed ortholog is 100%.
Bootstrap support for P0CD84 as seed ortholog is 100%.

Group of orthologs #145. Best score 51 bits
Score difference with first non-orthologous sequence - B.bovis:51 C.trachomatis:51

A7APC2              	100.00%		O84687              	100.00%
Bootstrap support for A7APC2 as seed ortholog is 100%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #146. Best score 50 bits
Score difference with first non-orthologous sequence - B.bovis:50 C.trachomatis:50

A7AQT7              	100.00%		P0CE04              	100.00%
Bootstrap support for A7AQT7 as seed ortholog is 100%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #147. Best score 49 bits
Score difference with first non-orthologous sequence - B.bovis:49 C.trachomatis:49

A7AW78              	100.00%		P0CD85              	100.00%
Bootstrap support for A7AW78 as seed ortholog is 100%.
Bootstrap support for P0CD85 as seed ortholog is 100%.

Group of orthologs #148. Best score 48 bits
Score difference with first non-orthologous sequence - B.bovis:48 C.trachomatis:48

A7AR22              	100.00%		O84771              	100.00%
Bootstrap support for A7AR22 as seed ortholog is 100%.
Bootstrap support for O84771 as seed ortholog is 100%.

Group of orthologs #149. Best score 47 bits
Score difference with first non-orthologous sequence - B.bovis:47 C.trachomatis:47

A7ASH3              	100.00%		O84548              	100.00%
A7AQ46              	32.67%		
Bootstrap support for A7ASH3 as seed ortholog is 100%.
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #150. Best score 43 bits
Score difference with first non-orthologous sequence - B.bovis:43 C.trachomatis:43

A7AP75              	100.00%		O84353              	100.00%
Bootstrap support for A7AP75 as seed ortholog is 100%.
Bootstrap support for O84353 as seed ortholog is 100%.

Group of orthologs #151. Best score 41 bits
Score difference with first non-orthologous sequence - B.bovis:41 C.trachomatis:41

A7AQT8              	100.00%		P0CD88              	100.00%
Bootstrap support for A7AQT8 as seed ortholog is 100%.
Bootstrap support for P0CD88 as seed ortholog is 100%.