###################################
200 groups of orthologs
322 in-paralogs from A.pisum
204 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 863 bits
Score difference with first non-orthologous sequence - A.pisum:608 C.trachomatis:863

J9K111              	100.00%		O84022              	100.00%
Bootstrap support for J9K111 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 830 bits
Score difference with first non-orthologous sequence - A.pisum:830 C.trachomatis:830

J9JLP6              	100.00%		O84250              	100.00%
Bootstrap support for J9JLP6 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 706 bits
Score difference with first non-orthologous sequence - A.pisum:149 C.trachomatis:706

J9JWD2              	100.00%		P17821              	100.00%
Bootstrap support for J9JWD2 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #4. Best score 675 bits
Score difference with first non-orthologous sequence - A.pisum:675 C.trachomatis:675

J9JSV8              	100.00%		O84348              	100.00%
Bootstrap support for J9JSV8 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #5. Best score 611 bits
Score difference with first non-orthologous sequence - A.pisum:611 C.trachomatis:611

J9JP04              	100.00%		O84716              	100.00%
Bootstrap support for J9JP04 as seed ortholog is 100%.
Bootstrap support for O84716 as seed ortholog is 100%.

Group of orthologs #6. Best score 534 bits
Score difference with first non-orthologous sequence - A.pisum:371 C.trachomatis:534

J9K4Z7              	100.00%		O84067              	100.00%
Bootstrap support for J9K4Z7 as seed ortholog is 100%.
Bootstrap support for O84067 as seed ortholog is 100%.

Group of orthologs #7. Best score 529 bits
Score difference with first non-orthologous sequence - A.pisum:452 C.trachomatis:339

J9K8K7              	100.00%		P0C0Z7              	100.00%
Bootstrap support for J9K8K7 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #8. Best score 517 bits
Score difference with first non-orthologous sequence - A.pisum:166 C.trachomatis:517

J9K4G5              	100.00%		O84444              	100.00%
Bootstrap support for J9K4G5 as seed ortholog is 99%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #9. Best score 512 bits
Score difference with first non-orthologous sequence - A.pisum:360 C.trachomatis:512

J9JJC7              	100.00%		O84304              	100.00%
Bootstrap support for J9JJC7 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #10. Best score 509 bits
Score difference with first non-orthologous sequence - A.pisum:509 C.trachomatis:509

J9K7C2              	100.00%		O84057              	100.00%
Bootstrap support for J9K7C2 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #11. Best score 502 bits
Score difference with first non-orthologous sequence - A.pisum:502 C.trachomatis:502

J9JR38              	100.00%		O84754              	100.00%
Bootstrap support for J9JR38 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #12. Best score 496 bits
Score difference with first non-orthologous sequence - A.pisum:496 C.trachomatis:496

J9JRH9              	100.00%		O84585              	100.00%
Bootstrap support for J9JRH9 as seed ortholog is 100%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #13. Best score 492 bits
Score difference with first non-orthologous sequence - A.pisum:492 C.trachomatis:492

J9JZV3              	100.00%		O84863              	100.00%
Bootstrap support for J9JZV3 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #14. Best score 483 bits
Score difference with first non-orthologous sequence - A.pisum:483 C.trachomatis:483

J9K6N9              	100.00%		O84066              	100.00%
Bootstrap support for J9K6N9 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #15. Best score 454 bits
Score difference with first non-orthologous sequence - A.pisum:454 C.trachomatis:454

J9JUD2              	100.00%		O84834              	100.00%
J9K831              	100.00%		
J9K800              	92.24%		
J9JRR3              	92.24%		
J9K304              	14.59%		
Bootstrap support for J9JUD2 as seed ortholog is 100%.
Bootstrap support for J9K831 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #16. Best score 444 bits
Score difference with first non-orthologous sequence - A.pisum:444 C.trachomatis:444

J9JYB5              	100.00%		O84848              	100.00%
J9K6J1              	6.26%		
Bootstrap support for J9JYB5 as seed ortholog is 100%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #17. Best score 424 bits
Score difference with first non-orthologous sequence - A.pisum:31 C.trachomatis:424

J9K1I1              	100.00%		P0CD71              	100.00%
Bootstrap support for J9K1I1 as seed ortholog is 82%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #18. Best score 420 bits
Score difference with first non-orthologous sequence - A.pisum:420 C.trachomatis:420

J9K8I5              	100.00%		O84849              	100.00%
Bootstrap support for J9K8I5 as seed ortholog is 100%.
Bootstrap support for O84849 as seed ortholog is 100%.

Group of orthologs #19. Best score 420 bits
Score difference with first non-orthologous sequence - A.pisum:420 C.trachomatis:420

J9KAW1              	100.00%		Q59321              	100.00%
Bootstrap support for J9KAW1 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #20. Best score 393 bits
Score difference with first non-orthologous sequence - A.pisum:393 C.trachomatis:393

J9K280              	100.00%		O84126              	100.00%
Bootstrap support for J9K280 as seed ortholog is 100%.
Bootstrap support for O84126 as seed ortholog is 100%.

Group of orthologs #21. Best score 379 bits
Score difference with first non-orthologous sequence - A.pisum:139 C.trachomatis:379

J9K9Z1              	100.00%		P0CE13              	100.00%
J9JPX2              	70.40%		
J9K727              	69.68%		
J9K8A8              	66.79%		
Bootstrap support for J9K9Z1 as seed ortholog is 99%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #22. Best score 374 bits
Score difference with first non-orthologous sequence - A.pisum:374 C.trachomatis:232

J9JQM5              	100.00%		O84310              	100.00%
Bootstrap support for J9JQM5 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #23. Best score 354 bits
Score difference with first non-orthologous sequence - A.pisum:354 C.trachomatis:354

J9JZC3              	100.00%		O84591              	100.00%
Bootstrap support for J9JZC3 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #24. Best score 341 bits
Score difference with first non-orthologous sequence - A.pisum:244 C.trachomatis:341

J9JLF1              	100.00%		O84831              	100.00%
Bootstrap support for J9JLF1 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #25. Best score 339 bits
Score difference with first non-orthologous sequence - A.pisum:274 C.trachomatis:339

J9JS13              	100.00%		O84115              	100.00%
                    	       		O84288              	17.42%
Bootstrap support for J9JS13 as seed ortholog is 100%.
Bootstrap support for O84115 as seed ortholog is 100%.

Group of orthologs #26. Best score 333 bits
Score difference with first non-orthologous sequence - A.pisum:333 C.trachomatis:333

J9K9I8              	100.00%		O84829              	100.00%
Bootstrap support for J9K9I8 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #27. Best score 323 bits
Score difference with first non-orthologous sequence - A.pisum:323 C.trachomatis:323

J9JSF4              	100.00%		O84823              	100.00%
Bootstrap support for J9JSF4 as seed ortholog is 100%.
Bootstrap support for O84823 as seed ortholog is 100%.

Group of orthologs #28. Best score 321 bits
Score difference with first non-orthologous sequence - A.pisum:321 C.trachomatis:321

J9K4W4              	100.00%		P0CD78              	100.00%
Bootstrap support for J9K4W4 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #29. Best score 319 bits
Score difference with first non-orthologous sequence - A.pisum:319 C.trachomatis:319

J9JLF6              	100.00%		P0CD73              	100.00%
Bootstrap support for J9JLF6 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #30. Best score 316 bits
Score difference with first non-orthologous sequence - A.pisum:209 C.trachomatis:316

J9K6D5              	100.00%		O84546              	100.00%
Bootstrap support for J9K6D5 as seed ortholog is 99%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #31. Best score 313 bits
Score difference with first non-orthologous sequence - A.pisum:313 C.trachomatis:313

J9JXY1              	100.00%		O84248              	100.00%
Bootstrap support for J9JXY1 as seed ortholog is 100%.
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #32. Best score 310 bits
Score difference with first non-orthologous sequence - A.pisum:260 C.trachomatis:310

J9K9F3              	100.00%		O84786              	100.00%
Bootstrap support for J9K9F3 as seed ortholog is 100%.
Bootstrap support for O84786 as seed ortholog is 100%.

Group of orthologs #33. Best score 309 bits
Score difference with first non-orthologous sequence - A.pisum:173 C.trachomatis:309

J9JTC9              	100.00%		O84561              	100.00%
Bootstrap support for J9JTC9 as seed ortholog is 99%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #34. Best score 309 bits
Score difference with first non-orthologous sequence - A.pisum:178 C.trachomatis:309

J9K661              	100.00%		O84035              	100.00%
Bootstrap support for J9K661 as seed ortholog is 99%.
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #35. Best score 307 bits
Score difference with first non-orthologous sequence - A.pisum:168 C.trachomatis:307

J9JR33              	100.00%		P0CE21              	100.00%
Bootstrap support for J9JR33 as seed ortholog is 99%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #36. Best score 295 bits
Score difference with first non-orthologous sequence - A.pisum:53 C.trachomatis:295

J9JV55              	100.00%		O84316              	100.00%
J9JT31              	97.37%		
J9K336              	5.92%		
Bootstrap support for J9JV55 as seed ortholog is 81%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #37. Best score 279 bits
Score difference with first non-orthologous sequence - A.pisum:279 C.trachomatis:279

J9K8K5              	100.00%		O84828              	100.00%
Bootstrap support for J9K8K5 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #38. Best score 277 bits
Score difference with first non-orthologous sequence - A.pisum:277 C.trachomatis:277

J9JYK6              	100.00%		O84775              	100.00%
Bootstrap support for J9JYK6 as seed ortholog is 100%.
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #39. Best score 271 bits
Score difference with first non-orthologous sequence - A.pisum:271 C.trachomatis:271

J9K531              	100.00%		O84451              	100.00%
Bootstrap support for J9K531 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #40. Best score 261 bits
Score difference with first non-orthologous sequence - A.pisum:93 C.trachomatis:261

J9K4M7              	100.00%		O84797              	100.00%
Bootstrap support for J9K4M7 as seed ortholog is 89%.
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #41. Best score 258 bits
Score difference with first non-orthologous sequence - A.pisum:258 C.trachomatis:258

J9K0L8              	100.00%		O84344              	100.00%
Bootstrap support for J9K0L8 as seed ortholog is 100%.
Bootstrap support for O84344 as seed ortholog is 100%.

Group of orthologs #42. Best score 257 bits
Score difference with first non-orthologous sequence - A.pisum:151 C.trachomatis:257

J9KAX2              	100.00%		O84352              	100.00%
J9K665              	13.62%		
J9K379              	12.40%		
J9K7W5              	12.06%		
Bootstrap support for J9KAX2 as seed ortholog is 99%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #43. Best score 257 bits
Score difference with first non-orthologous sequence - A.pisum:257 C.trachomatis:257

J9JQ54              	100.00%		P0CD72              	100.00%
Bootstrap support for J9JQ54 as seed ortholog is 100%.
Bootstrap support for P0CD72 as seed ortholog is 100%.

Group of orthologs #44. Best score 256 bits
Score difference with first non-orthologous sequence - A.pisum:74 C.trachomatis:105

J9JMC9              	100.00%		O84249              	100.00%
Bootstrap support for J9JMC9 as seed ortholog is 96%.
Bootstrap support for O84249 as seed ortholog is 98%.

Group of orthologs #45. Best score 255 bits
Score difference with first non-orthologous sequence - A.pisum:255 C.trachomatis:255

J9JKQ2              	100.00%		O84188              	100.00%
Bootstrap support for J9JKQ2 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #46. Best score 254 bits
Score difference with first non-orthologous sequence - A.pisum:254 C.trachomatis:254

J9JIS1              	100.00%		O84642              	100.00%
J9K0F6              	18.60%		
J9JV62              	12.62%		
J9JRT0              	8.31%		
Bootstrap support for J9JIS1 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #47. Best score 254 bits
Score difference with first non-orthologous sequence - A.pisum:254 C.trachomatis:254

J9JK89              	100.00%		O84315              	100.00%
Bootstrap support for J9JK89 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #48. Best score 253 bits
Score difference with first non-orthologous sequence - A.pisum:206 C.trachomatis:253

J9JVX1              	100.00%		O84381              	100.00%
J9JMB3              	65.52%		
J9JKM7              	65.02%		
J9JWA6              	23.89%		
Bootstrap support for J9JVX1 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #49. Best score 252 bits
Score difference with first non-orthologous sequence - A.pisum:252 C.trachomatis:252

J9JNI6              	100.00%		O84562              	100.00%
Bootstrap support for J9JNI6 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #50. Best score 251 bits
Score difference with first non-orthologous sequence - A.pisum:145 C.trachomatis:251

J9JUQ1              	100.00%		O84006              	100.00%
Bootstrap support for J9JUQ1 as seed ortholog is 99%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #51. Best score 250 bits
Score difference with first non-orthologous sequence - A.pisum:59 C.trachomatis:250

J9JUE2              	100.00%		O84360              	100.00%
Bootstrap support for J9JUE2 as seed ortholog is 89%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #52. Best score 245 bits
Score difference with first non-orthologous sequence - A.pisum:77 C.trachomatis:245

J9JNM1              	100.00%		O84787              	100.00%
Bootstrap support for J9JNM1 as seed ortholog is 93%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #53. Best score 245 bits
Score difference with first non-orthologous sequence - A.pisum:245 C.trachomatis:245

J9K2Q4              	100.00%		P36431              	100.00%
Bootstrap support for J9K2Q4 as seed ortholog is 100%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #54. Best score 243 bits
Score difference with first non-orthologous sequence - A.pisum:173 C.trachomatis:122

J9KAU8              	100.00%		O84309              	100.00%
Bootstrap support for J9KAU8 as seed ortholog is 100%.
Bootstrap support for O84309 as seed ortholog is 99%.

Group of orthologs #55. Best score 241 bits
Score difference with first non-orthologous sequence - A.pisum:241 C.trachomatis:241

J9K837              	100.00%		P0CE09              	100.00%
J9K0J8              	16.72%		
Bootstrap support for J9K837 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #56. Best score 239 bits
Score difference with first non-orthologous sequence - A.pisum:239 C.trachomatis:74

J9K671              	100.00%		O84026              	100.00%
Bootstrap support for J9K671 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 98%.

Group of orthologs #57. Best score 224 bits
Score difference with first non-orthologous sequence - A.pisum:103 C.trachomatis:57

J9JT36              	100.00%		O84058              	100.00%
Bootstrap support for J9JT36 as seed ortholog is 100%.
Bootstrap support for O84058 as seed ortholog is 96%.

Group of orthologs #58. Best score 223 bits
Score difference with first non-orthologous sequence - A.pisum:223 C.trachomatis:223

J9JYY5              	100.00%		O84296              	100.00%
Bootstrap support for J9JYY5 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #59. Best score 222 bits
Score difference with first non-orthologous sequence - A.pisum:222 C.trachomatis:222

J9JX07              	100.00%		O84711              	100.00%
Bootstrap support for J9JX07 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #60. Best score 219 bits
Score difference with first non-orthologous sequence - A.pisum:219 C.trachomatis:219

J9JRX2              	100.00%		O84065              	100.00%
J9JN88              	73.54%		
Bootstrap support for J9JRX2 as seed ortholog is 100%.
Bootstrap support for O84065 as seed ortholog is 100%.

Group of orthologs #61. Best score 219 bits
Score difference with first non-orthologous sequence - A.pisum:219 C.trachomatis:219

J9JY75              	100.00%		O84081              	100.00%
Bootstrap support for J9JY75 as seed ortholog is 100%.
Bootstrap support for O84081 as seed ortholog is 100%.

Group of orthologs #62. Best score 218 bits
Score difference with first non-orthologous sequence - A.pisum:82 C.trachomatis:218

J9JWQ8              	100.00%		O84049              	100.00%
Bootstrap support for J9JWQ8 as seed ortholog is 97%.
Bootstrap support for O84049 as seed ortholog is 100%.

Group of orthologs #63. Best score 218 bits
Score difference with first non-orthologous sequence - A.pisum:218 C.trachomatis:218

J9KAJ4              	100.00%		O84638              	100.00%
Bootstrap support for J9KAJ4 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #64. Best score 216 bits
Score difference with first non-orthologous sequence - A.pisum:216 C.trachomatis:216

J9JX87              	100.00%		O84297              	100.00%
Bootstrap support for J9JX87 as seed ortholog is 100%.
Bootstrap support for O84297 as seed ortholog is 100%.

Group of orthologs #65. Best score 213 bits
Score difference with first non-orthologous sequence - A.pisum:213 C.trachomatis:213

J9KA28              	100.00%		O84196              	100.00%
Bootstrap support for J9KA28 as seed ortholog is 100%.
Bootstrap support for O84196 as seed ortholog is 100%.

Group of orthologs #66. Best score 211 bits
Score difference with first non-orthologous sequence - A.pisum:211 C.trachomatis:87

C4WWX4              	100.00%		O84712              	100.00%
Bootstrap support for C4WWX4 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 99%.

Group of orthologs #67. Best score 210 bits
Score difference with first non-orthologous sequence - A.pisum:210 C.trachomatis:210

J9K857              	100.00%		O84690              	100.00%
Bootstrap support for J9K857 as seed ortholog is 100%.
Bootstrap support for O84690 as seed ortholog is 100%.

Group of orthologs #68. Best score 208 bits
Score difference with first non-orthologous sequence - A.pisum:25 C.trachomatis:208

J9K2H1              	100.00%		O84345              	100.00%
Bootstrap support for J9K2H1 as seed ortholog is 82%.
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #69. Best score 203 bits
Score difference with first non-orthologous sequence - A.pisum:91 C.trachomatis:67

J9JKB6              	100.00%		O84028              	100.00%
Bootstrap support for J9JKB6 as seed ortholog is 99%.
Bootstrap support for O84028 as seed ortholog is 97%.

Group of orthologs #70. Best score 200 bits
Score difference with first non-orthologous sequence - A.pisum:25 C.trachomatis:200

J9K124              	100.00%		O84423              	100.00%
Bootstrap support for J9K124 as seed ortholog is 76%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #71. Best score 199 bits
Score difference with first non-orthologous sequence - A.pisum:199 C.trachomatis:199

J9K704              	100.00%		O84812              	100.00%
J9JW94              	47.91%		
J9KNR1              	5.95%		
Bootstrap support for J9K704 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #72. Best score 199 bits
Score difference with first non-orthologous sequence - A.pisum:199 C.trachomatis:199

C4WT45              	100.00%		O84332              	100.00%
Bootstrap support for C4WT45 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #73. Best score 197 bits
Score difference with first non-orthologous sequence - A.pisum:197 C.trachomatis:197

J9JNV1              	100.00%		O84007              	100.00%
Bootstrap support for J9JNV1 as seed ortholog is 100%.
Bootstrap support for O84007 as seed ortholog is 100%.

Group of orthologs #74. Best score 197 bits
Score difference with first non-orthologous sequence - A.pisum:197 C.trachomatis:197

J9K3N0              	100.00%		O84596              	100.00%
Bootstrap support for J9K3N0 as seed ortholog is 100%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #75. Best score 191 bits
Score difference with first non-orthologous sequence - A.pisum:191 C.trachomatis:94

J9JM35              	100.00%		O84406              	100.00%
J9K1P4              	13.42%		
Bootstrap support for J9JM35 as seed ortholog is 100%.
Bootstrap support for O84406 as seed ortholog is 99%.

Group of orthologs #76. Best score 191 bits
Score difference with first non-orthologous sequence - A.pisum:191 C.trachomatis:92

J9JQV2              	100.00%		O84755              	100.00%
Bootstrap support for J9JQV2 as seed ortholog is 100%.
Bootstrap support for O84755 as seed ortholog is 94%.

Group of orthologs #77. Best score 188 bits
Score difference with first non-orthologous sequence - A.pisum:57 C.trachomatis:188

J9JTT9              	100.00%		O84266              	100.00%
J9K9R9              	100.00%		
Bootstrap support for J9JTT9 as seed ortholog is 93%.
Bootstrap support for J9K9R9 as seed ortholog is 92%.
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #78. Best score 186 bits
Score difference with first non-orthologous sequence - A.pisum:133 C.trachomatis:32

J9LP47              	100.00%		O84204              	100.00%
Bootstrap support for J9LP47 as seed ortholog is 100%.
Bootstrap support for O84204 as seed ortholog is 84%.

Group of orthologs #79. Best score 185 bits
Score difference with first non-orthologous sequence - A.pisum:109 C.trachomatis:185

J9JUD8              	100.00%		O84608              	100.00%
J9JQE9              	25.40%		
J9JUC5              	23.49%		
Bootstrap support for J9JUD8 as seed ortholog is 100%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #80. Best score 185 bits
Score difference with first non-orthologous sequence - A.pisum:120 C.trachomatis:21

J9LQR0              	100.00%		O84695              	100.00%
Bootstrap support for J9LQR0 as seed ortholog is 99%.
Bootstrap support for O84695 as seed ortholog is 78%.

Group of orthologs #81. Best score 180 bits
Score difference with first non-orthologous sequence - A.pisum:180 C.trachomatis:180

J9JN07              	100.00%		O84704              	100.00%
Bootstrap support for J9JN07 as seed ortholog is 100%.
Bootstrap support for O84704 as seed ortholog is 100%.

Group of orthologs #82. Best score 178 bits
Score difference with first non-orthologous sequence - A.pisum:178 C.trachomatis:178

J9JQ77              	100.00%		O84859              	100.00%
C4WUS7              	10.64%		
Bootstrap support for J9JQ77 as seed ortholog is 100%.
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #83. Best score 178 bits
Score difference with first non-orthologous sequence - A.pisum:178 C.trachomatis:178

J9M7D5              	100.00%		O84474              	100.00%
Bootstrap support for J9M7D5 as seed ortholog is 100%.
Bootstrap support for O84474 as seed ortholog is 100%.

Group of orthologs #84. Best score 177 bits
Score difference with first non-orthologous sequence - A.pisum:83 C.trachomatis:177

J9JQR0              	100.00%		O84247              	100.00%
Bootstrap support for J9JQR0 as seed ortholog is 99%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #85. Best score 176 bits
Score difference with first non-orthologous sequence - A.pisum:82 C.trachomatis:176

J9K955              	100.00%		O84200              	100.00%
Bootstrap support for J9K955 as seed ortholog is 98%.
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #86. Best score 170 bits
Score difference with first non-orthologous sequence - A.pisum:121 C.trachomatis:170

J9JPX7              	100.00%		O84589              	100.00%
Bootstrap support for J9JPX7 as seed ortholog is 99%.
Bootstrap support for O84589 as seed ortholog is 100%.

Group of orthologs #87. Best score 169 bits
Score difference with first non-orthologous sequence - A.pisum:169 C.trachomatis:169

J9K2N2              	100.00%		O84460              	100.00%
Bootstrap support for J9K2N2 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #88. Best score 167 bits
Score difference with first non-orthologous sequence - A.pisum:35 C.trachomatis:167

J9JW61              	100.00%		O84734              	100.00%
Bootstrap support for J9JW61 as seed ortholog is 79%.
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #89. Best score 165 bits
Score difference with first non-orthologous sequence - A.pisum:165 C.trachomatis:165

J9JW65              	100.00%		O84720              	100.00%
Bootstrap support for J9JW65 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #90. Best score 165 bits
Score difference with first non-orthologous sequence - A.pisum:165 C.trachomatis:55

J9K571              	100.00%		O84260              	100.00%
Bootstrap support for J9K571 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 92%.

Group of orthologs #91. Best score 161 bits
Score difference with first non-orthologous sequence - A.pisum:161 C.trachomatis:161

C4WUL0              	100.00%		O84456              	100.00%
J9JYW9              	69.23%		
Bootstrap support for C4WUL0 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #92. Best score 161 bits
Score difference with first non-orthologous sequence - A.pisum:161 C.trachomatis:161

J9JR32              	100.00%		O84579              	100.00%
Bootstrap support for J9JR32 as seed ortholog is 100%.
Bootstrap support for O84579 as seed ortholog is 100%.

Group of orthologs #93. Best score 161 bits
Score difference with first non-orthologous sequence - A.pisum:161 C.trachomatis:161

J9JUM8              	100.00%		O84074              	100.00%
Bootstrap support for J9JUM8 as seed ortholog is 100%.
Bootstrap support for O84074 as seed ortholog is 100%.

Group of orthologs #94. Best score 158 bits
Score difference with first non-orthologous sequence - A.pisum:17 C.trachomatis:117

J9K306              	100.00%		P38004              	100.00%
Bootstrap support for J9K306 as seed ortholog is 74%.
Alternative seed ortholog is J9JZM4 (17 bits away from this cluster)
Bootstrap support for P38004 as seed ortholog is 99%.

Group of orthologs #95. Best score 151 bits
Score difference with first non-orthologous sequence - A.pisum:151 C.trachomatis:151

Q201V3              	100.00%		O84727              	100.00%
J9JT11              	62.33%		
J9K275              	33.88%		
Bootstrap support for Q201V3 as seed ortholog is 100%.
Bootstrap support for O84727 as seed ortholog is 100%.

Group of orthologs #96. Best score 148 bits
Score difference with first non-orthologous sequence - A.pisum:148 C.trachomatis:148

J9JUM7              	100.00%		O84752              	100.00%
Bootstrap support for J9JUM7 as seed ortholog is 100%.
Bootstrap support for O84752 as seed ortholog is 100%.

Group of orthologs #97. Best score 147 bits
Score difference with first non-orthologous sequence - A.pisum:41 C.trachomatis:147

J9JWI7              	100.00%		O84864              	100.00%
J9JRK3              	33.03%		
J9JU03              	27.54%		
J9JIX9              	23.85%		
J9K0H6              	17.86%		
J9K1L4              	16.27%		
J9JUB7              	16.17%		
Bootstrap support for J9JWI7 as seed ortholog is 94%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #98. Best score 143 bits
Score difference with first non-orthologous sequence - A.pisum:143 C.trachomatis:143

J9K300              	100.00%		O84098              	100.00%
Bootstrap support for J9K300 as seed ortholog is 100%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #99. Best score 141 bits
Score difference with first non-orthologous sequence - A.pisum:141 C.trachomatis:141

J9JUH0              	100.00%		O84123              	100.00%
Bootstrap support for J9JUH0 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #100. Best score 140 bits
Score difference with first non-orthologous sequence - A.pisum:140 C.trachomatis:140

J9JZT4              	100.00%		O84274              	100.00%
Bootstrap support for J9JZT4 as seed ortholog is 100%.
Bootstrap support for O84274 as seed ortholog is 100%.

Group of orthologs #101. Best score 134 bits
Score difference with first non-orthologous sequence - A.pisum:134 C.trachomatis:134

J9JRD6              	100.00%		O84234              	100.00%
J9JSA8              	24.76%		
J9K6Y9              	21.43%		
J9JSJ1              	15.58%		
Bootstrap support for J9JRD6 as seed ortholog is 100%.
Bootstrap support for O84234 as seed ortholog is 100%.

Group of orthologs #102. Best score 133 bits
Score difference with first non-orthologous sequence - A.pisum:133 C.trachomatis:133

J9K048              	100.00%		O84732              	100.00%
J9K6M4              	100.00%		
J9K6W8              	100.00%		
J9K395              	75.41%		
J9K3E1              	57.65%		
J9JVN5              	16.63%		
Bootstrap support for J9K048 as seed ortholog is 100%.
Bootstrap support for J9K6M4 as seed ortholog is 100%.
Bootstrap support for J9K6W8 as seed ortholog is 100%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #103. Best score 130 bits
Score difference with first non-orthologous sequence - A.pisum:130 C.trachomatis:130

J9JKM4              	100.00%		O84241              	100.00%
Bootstrap support for J9JKM4 as seed ortholog is 100%.
Bootstrap support for O84241 as seed ortholog is 100%.

Group of orthologs #104. Best score 127 bits
Score difference with first non-orthologous sequence - A.pisum:127 C.trachomatis:127

J9K177              	100.00%		O84835              	100.00%
Bootstrap support for J9K177 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #105. Best score 122 bits
Score difference with first non-orthologous sequence - A.pisum:122 C.trachomatis:122

J9JYR4              	100.00%		O84033              	100.00%
Bootstrap support for J9JYR4 as seed ortholog is 100%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #106. Best score 121 bits
Score difference with first non-orthologous sequence - A.pisum:29 C.trachomatis:121

C4WT06              	100.00%		O84130              	100.00%
J9JPU2              	7.82%		
Bootstrap support for C4WT06 as seed ortholog is 79%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #107. Best score 119 bits
Score difference with first non-orthologous sequence - A.pisum:119 C.trachomatis:119

J9K9Q3              	100.00%		O84492              	100.00%
Bootstrap support for J9K9Q3 as seed ortholog is 100%.
Bootstrap support for O84492 as seed ortholog is 100%.

Group of orthologs #108. Best score 116 bits
Score difference with first non-orthologous sequence - A.pisum:116 C.trachomatis:116

J9K335              	100.00%		O84649              	100.00%
J9K7K9              	16.77%		
Bootstrap support for J9K335 as seed ortholog is 100%.
Bootstrap support for O84649 as seed ortholog is 100%.

Group of orthologs #109. Best score 110 bits
Score difference with first non-orthologous sequence - A.pisum:110 C.trachomatis:110

J9JPK5              	100.00%		P55137              	100.00%
J9K649              	12.55%		
J9JNG6              	5.31%		
Bootstrap support for J9JPK5 as seed ortholog is 100%.
Bootstrap support for P55137 as seed ortholog is 100%.

Group of orthologs #110. Best score 107 bits
Score difference with first non-orthologous sequence - A.pisum:107 C.trachomatis:107

C4WS56              	100.00%		O84435              	100.00%
Bootstrap support for C4WS56 as seed ortholog is 100%.
Bootstrap support for O84435 as seed ortholog is 100%.

Group of orthologs #111. Best score 105 bits
Score difference with first non-orthologous sequence - A.pisum:10 C.trachomatis:105

J9JVQ6              	100.00%		O84843              	100.00%
Bootstrap support for J9JVQ6 as seed ortholog is 59%.
Alternative seed ortholog is J9JLR5 (10 bits away from this cluster)
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #112. Best score 104 bits
Score difference with first non-orthologous sequence - A.pisum:38 C.trachomatis:104

Q1W9N6              	100.00%		O84508              	100.00%
Q201X7              	79.72%		
Bootstrap support for Q1W9N6 as seed ortholog is 96%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #113. Best score 104 bits
Score difference with first non-orthologous sequence - A.pisum:54 C.trachomatis:104

C4WX29              	100.00%		P66370              	100.00%
Bootstrap support for C4WX29 as seed ortholog is 99%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #114. Best score 103 bits
Score difference with first non-orthologous sequence - A.pisum:42 C.trachomatis:7

J9JJC8              	100.00%		O84071              	100.00%
Bootstrap support for J9JJC8 as seed ortholog is 91%.
Bootstrap support for O84071 as seed ortholog is 59%.
Alternative seed ortholog is O84421 (7 bits away from this cluster)

Group of orthologs #115. Best score 102 bits
Score difference with first non-orthologous sequence - A.pisum:102 C.trachomatis:102

J9K100              	100.00%		O84535              	100.00%
Bootstrap support for J9K100 as seed ortholog is 100%.
Bootstrap support for O84535 as seed ortholog is 100%.

Group of orthologs #116. Best score 102 bits
Score difference with first non-orthologous sequence - A.pisum:102 C.trachomatis:102

J9LK73              	100.00%		O84737              	100.00%
Bootstrap support for J9LK73 as seed ortholog is 100%.
Bootstrap support for O84737 as seed ortholog is 100%.

Group of orthologs #117. Best score 101 bits
Score difference with first non-orthologous sequence - A.pisum:101 C.trachomatis:101

J9K6V0              	100.00%		O84301              	100.00%
Bootstrap support for J9K6V0 as seed ortholog is 100%.
Bootstrap support for O84301 as seed ortholog is 100%.

Group of orthologs #118. Best score 99 bits
Score difference with first non-orthologous sequence - A.pisum:99 C.trachomatis:99

C4WSJ7              	100.00%		O84391              	100.00%
J9K240              	100.00%		
Bootstrap support for C4WSJ7 as seed ortholog is 100%.
Bootstrap support for J9K240 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #119. Best score 98 bits
Score difference with first non-orthologous sequence - A.pisum:98 C.trachomatis:98

J9K558              	100.00%		O84781              	100.00%
J9K5Y7              	18.90%		
J9JLU8              	16.43%		
J9JLU3              	8.26%		
J9JTQ5              	6.71%		
J9K3P8              	6.20%		
Bootstrap support for J9K558 as seed ortholog is 100%.
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #120. Best score 98 bits
Score difference with first non-orthologous sequence - A.pisum:98 C.trachomatis:98

C4WVN5              	100.00%		O84358              	100.00%
Bootstrap support for C4WVN5 as seed ortholog is 100%.
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #121. Best score 97 bits
Score difference with first non-orthologous sequence - A.pisum:97 C.trachomatis:97

J9K4H0              	100.00%		O84390              	100.00%
Bootstrap support for J9K4H0 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #122. Best score 96 bits
Score difference with first non-orthologous sequence - A.pisum:96 C.trachomatis:96

J9JX51              	100.00%		O84710              	100.00%
                    	       		O84415              	8.58%
Bootstrap support for J9JX51 as seed ortholog is 100%.
Bootstrap support for O84710 as seed ortholog is 100%.

Group of orthologs #123. Best score 96 bits
Score difference with first non-orthologous sequence - A.pisum:26 C.trachomatis:96

C4WSN2              	100.00%		O84530              	100.00%
Bootstrap support for C4WSN2 as seed ortholog is 81%.
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #124. Best score 96 bits
Score difference with first non-orthologous sequence - A.pisum:96 C.trachomatis:96

J9K6G9              	100.00%		P0CD79              	100.00%
Bootstrap support for J9K6G9 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #125. Best score 95 bits
Score difference with first non-orthologous sequence - A.pisum:25 C.trachomatis:15

J9L4N1              	100.00%		O84660              	100.00%
J9M7A0              	27.33%		
Bootstrap support for J9L4N1 as seed ortholog is 80%.
Bootstrap support for O84660 as seed ortholog is 67%.
Alternative seed ortholog is O84421 (15 bits away from this cluster)

Group of orthologs #126. Best score 94 bits
Score difference with first non-orthologous sequence - A.pisum:94 C.trachomatis:94

J9JMZ2              	100.00%		O84442              	100.00%
J9JXA4              	11.59%		
J9JN78              	11.51%		
Bootstrap support for J9JMZ2 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #127. Best score 94 bits
Score difference with first non-orthologous sequence - A.pisum:94 C.trachomatis:94

J9JWW2              	100.00%		O84874              	100.00%
Bootstrap support for J9JWW2 as seed ortholog is 100%.
Bootstrap support for O84874 as seed ortholog is 100%.

Group of orthologs #128. Best score 94 bits
Score difference with first non-orthologous sequence - A.pisum:94 C.trachomatis:94

J9K8P6              	100.00%		O84865              	100.00%
Bootstrap support for J9K8P6 as seed ortholog is 100%.
Bootstrap support for O84865 as seed ortholog is 100%.

Group of orthologs #129. Best score 92 bits
Score difference with first non-orthologous sequence - A.pisum:92 C.trachomatis:92

J9K9P9              	100.00%		O84215              	100.00%
Bootstrap support for J9K9P9 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #130. Best score 91 bits
Score difference with first non-orthologous sequence - A.pisum:27 C.trachomatis:91

J9JXS8              	100.00%		O84211              	100.00%
Bootstrap support for J9JXS8 as seed ortholog is 56%.
Alternative seed ortholog is J9K444 (27 bits away from this cluster)
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #131. Best score 90 bits
Score difference with first non-orthologous sequence - A.pisum:90 C.trachomatis:90

J9JZY9              	100.00%		O84548              	100.00%
Bootstrap support for J9JZY9 as seed ortholog is 100%.
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #132. Best score 89 bits
Score difference with first non-orthologous sequence - A.pisum:89 C.trachomatis:89

J9JMH0              	100.00%		O84782              	100.00%
J9JJ47              	72.40%		
J9K2R8              	6.82%		
J9JZW3              	6.30%		
J9K1I0              	5.46%		
Bootstrap support for J9JMH0 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #133. Best score 89 bits
Score difference with first non-orthologous sequence - A.pisum:15 C.trachomatis:89

J9JVZ0              	100.00%		O84650              	100.00%
Bootstrap support for J9JVZ0 as seed ortholog is 67%.
Alternative seed ortholog is J9K6J4 (15 bits away from this cluster)
Bootstrap support for O84650 as seed ortholog is 100%.

Group of orthologs #134. Best score 88 bits
Score difference with first non-orthologous sequence - A.pisum:40 C.trachomatis:88

C4WVL9              	100.00%		P0CE06              	100.00%
Bootstrap support for C4WVL9 as seed ortholog is 90%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #135. Best score 87 bits
Score difference with first non-orthologous sequence - A.pisum:87 C.trachomatis:87

J9JU73              	100.00%		O84321              	100.00%
Bootstrap support for J9JU73 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #136. Best score 86 bits
Score difference with first non-orthologous sequence - A.pisum:86 C.trachomatis:86

J9JR82              	100.00%		O84599              	100.00%
J9K5A0              	8.08%		
Bootstrap support for J9JR82 as seed ortholog is 100%.
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #137. Best score 86 bits
Score difference with first non-orthologous sequence - A.pisum:1 C.trachomatis:86

C4WSP8              	100.00%		O84544              	100.00%
Bootstrap support for C4WSP8 as seed ortholog is 50%.
Alternative seed ortholog is J9JLN6 (1 bits away from this cluster)
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #138. Best score 85 bits
Score difference with first non-orthologous sequence - A.pisum:85 C.trachomatis:85

J9K528              	100.00%		O84338              	100.00%
J9K578              	21.48%		
J9K5U8              	20.42%		
Bootstrap support for J9K528 as seed ortholog is 100%.
Bootstrap support for O84338 as seed ortholog is 100%.

Group of orthologs #139. Best score 85 bits
Score difference with first non-orthologous sequence - A.pisum:85 C.trachomatis:85

J9K969              	100.00%		O84212              	100.00%
J9JVA9              	8.40%		
Bootstrap support for J9K969 as seed ortholog is 100%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #140. Best score 85 bits
Score difference with first non-orthologous sequence - A.pisum:85 C.trachomatis:85

J9JSU0              	100.00%		O84686              	100.00%
Bootstrap support for J9JSU0 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #141. Best score 84 bits
Score difference with first non-orthologous sequence - A.pisum:84 C.trachomatis:84

J9JT66              	100.00%		O84595              	100.00%
Bootstrap support for J9JT66 as seed ortholog is 100%.
Bootstrap support for O84595 as seed ortholog is 100%.

Group of orthologs #142. Best score 84 bits
Score difference with first non-orthologous sequence - A.pisum:84 C.trachomatis:84

J9KB06              	100.00%		O84687              	100.00%
Bootstrap support for J9KB06 as seed ortholog is 100%.
Bootstrap support for O84687 as seed ortholog is 100%.

Group of orthologs #143. Best score 81 bits
Score difference with first non-orthologous sequence - A.pisum:81 C.trachomatis:81

J9JNH6              	100.00%		O84658              	100.00%
J9K1S9              	6.42%		
Bootstrap support for J9JNH6 as seed ortholog is 100%.
Bootstrap support for O84658 as seed ortholog is 100%.

Group of orthologs #144. Best score 78 bits
Score difference with first non-orthologous sequence - A.pisum:78 C.trachomatis:78

J9JU83              	100.00%		O84533              	100.00%
Bootstrap support for J9JU83 as seed ortholog is 100%.
Bootstrap support for O84533 as seed ortholog is 100%.

Group of orthologs #145. Best score 77 bits
Score difference with first non-orthologous sequence - A.pisum:77 C.trachomatis:77

J9JQN3              	100.00%		O84307              	100.00%
J9K3R8              	55.48%		
J9JZE6              	52.98%		
Bootstrap support for J9JQN3 as seed ortholog is 100%.
Bootstrap support for O84307 as seed ortholog is 100%.

Group of orthologs #146. Best score 77 bits
Score difference with first non-orthologous sequence - A.pisum:77 C.trachomatis:77

J9JT63              	100.00%		O84357              	100.00%
Bootstrap support for J9JT63 as seed ortholog is 100%.
Bootstrap support for O84357 as seed ortholog is 100%.

Group of orthologs #147. Best score 76 bits
Score difference with first non-orthologous sequence - A.pisum:3 C.trachomatis:11

J9K9T9              	100.00%		O84154              	100.00%
J9JV78              	17.58%		
J9JTU1              	12.32%		
Bootstrap support for J9K9T9 as seed ortholog is 46%.
Alternative seed ortholog is J9JZD3 (3 bits away from this cluster)
Bootstrap support for O84154 as seed ortholog is 64%.
Alternative seed ortholog is O84696 (11 bits away from this cluster)

Group of orthologs #148. Best score 76 bits
Score difference with first non-orthologous sequence - A.pisum:76 C.trachomatis:76

C4WTK9              	100.00%		O84294              	100.00%
Bootstrap support for C4WTK9 as seed ortholog is 100%.
Bootstrap support for O84294 as seed ortholog is 100%.

Group of orthologs #149. Best score 76 bits
Score difference with first non-orthologous sequence - A.pisum:76 C.trachomatis:76

J9JNW9              	100.00%		O84719              	100.00%
Bootstrap support for J9JNW9 as seed ortholog is 100%.
Bootstrap support for O84719 as seed ortholog is 100%.

Group of orthologs #150. Best score 76 bits
Score difference with first non-orthologous sequence - A.pisum:76 C.trachomatis:76

J9JYY4              	100.00%		O84578              	100.00%
Bootstrap support for J9JYY4 as seed ortholog is 100%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #151. Best score 76 bits
Score difference with first non-orthologous sequence - A.pisum:76 C.trachomatis:76

J9KH64              	100.00%		O84757              	100.00%
Bootstrap support for J9KH64 as seed ortholog is 100%.
Bootstrap support for O84757 as seed ortholog is 100%.

Group of orthologs #152. Best score 75 bits
Score difference with first non-orthologous sequence - A.pisum:75 C.trachomatis:75

J9JKJ8              	100.00%		P0C0Z8              	100.00%
Bootstrap support for J9JKJ8 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #153. Best score 74 bits
Score difference with first non-orthologous sequence - A.pisum:74 C.trachomatis:74

C4WU61              	100.00%		O84284              	100.00%
Bootstrap support for C4WU61 as seed ortholog is 100%.
Bootstrap support for O84284 as seed ortholog is 100%.

Group of orthologs #154. Best score 74 bits
Score difference with first non-orthologous sequence - A.pisum:74 C.trachomatis:74

J9JTH7              	100.00%		O84851              	100.00%
Bootstrap support for J9JTH7 as seed ortholog is 100%.
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #155. Best score 74 bits
Score difference with first non-orthologous sequence - A.pisum:74 C.trachomatis:74

J9K0I9              	100.00%		O84189              	100.00%
Bootstrap support for J9K0I9 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #156. Best score 72 bits
Score difference with first non-orthologous sequence - A.pisum:23 C.trachomatis:72

J9JMZ9              	100.00%		O84822              	100.00%
Bootstrap support for J9JMZ9 as seed ortholog is 71%.
Alternative seed ortholog is J9K1M9 (23 bits away from this cluster)
Bootstrap support for O84822 as seed ortholog is 100%.

Group of orthologs #157. Best score 72 bits
Score difference with first non-orthologous sequence - A.pisum:7 C.trachomatis:72

J9JVU5              	100.00%		P0CE03              	100.00%
Bootstrap support for J9JVU5 as seed ortholog is 69%.
Alternative seed ortholog is C4WSJ6 (7 bits away from this cluster)
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #158. Best score 72 bits
Score difference with first non-orthologous sequence - A.pisum:72 C.trachomatis:72

J9K543              	100.00%		O84408              	100.00%
Bootstrap support for J9K543 as seed ortholog is 100%.
Bootstrap support for O84408 as seed ortholog is 100%.

Group of orthologs #159. Best score 71 bits
Score difference with first non-orthologous sequence - A.pisum:71 C.trachomatis:71

J9LF72              	100.00%		O84385              	100.00%
Bootstrap support for J9LF72 as seed ortholog is 100%.
Bootstrap support for O84385 as seed ortholog is 100%.

Group of orthologs #160. Best score 70 bits
Score difference with first non-orthologous sequence - A.pisum:70 C.trachomatis:70

J9JXA7              	100.00%		O84547              	100.00%
Bootstrap support for J9JXA7 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #161. Best score 69 bits
Score difference with first non-orthologous sequence - A.pisum:21 C.trachomatis:69

C4WRU2              	100.00%		P0CD81              	100.00%
Bootstrap support for C4WRU2 as seed ortholog is 81%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #162. Best score 68 bits
Score difference with first non-orthologous sequence - A.pisum:68 C.trachomatis:68

J9LB65              	100.00%		O84366              	100.00%
Bootstrap support for J9LB65 as seed ortholog is 100%.
Bootstrap support for O84366 as seed ortholog is 100%.

Group of orthologs #163. Best score 67 bits
Score difference with first non-orthologous sequence - A.pisum:67 C.trachomatis:67

C4WVU0              	100.00%		O84618              	100.00%
Bootstrap support for C4WVU0 as seed ortholog is 100%.
Bootstrap support for O84618 as seed ortholog is 100%.

Group of orthologs #164. Best score 67 bits
Score difference with first non-orthologous sequence - A.pisum:67 C.trachomatis:67

J9KRH6              	100.00%		O84860              	100.00%
Bootstrap support for J9KRH6 as seed ortholog is 100%.
Bootstrap support for O84860 as seed ortholog is 100%.

Group of orthologs #165. Best score 65 bits
Score difference with first non-orthologous sequence - A.pisum:65 C.trachomatis:65

G0Y6R6              	100.00%		O84379              	100.00%
J9K634              	77.44%		
J9JXH6              	46.70%		
J9JK47              	45.28%		
J9JT70              	44.95%		
J9JN32              	40.02%		
J9JYF5              	40.02%		
J9JXL3              	39.85%		
J9JUA3              	35.76%		
J9KAK6              	30.08%		
J9JK91              	28.91%		
Bootstrap support for G0Y6R6 as seed ortholog is 100%.
Bootstrap support for O84379 as seed ortholog is 100%.

Group of orthologs #166. Best score 65 bits
Score difference with first non-orthologous sequence - A.pisum:65 C.trachomatis:65

C4WSH2              	100.00%		O84128              	100.00%
Bootstrap support for C4WSH2 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #167. Best score 65 bits
Score difference with first non-orthologous sequence - A.pisum:65 C.trachomatis:65

J9K7E2              	100.00%		O84703              	100.00%
Bootstrap support for J9K7E2 as seed ortholog is 100%.
Bootstrap support for O84703 as seed ortholog is 100%.

Group of orthologs #168. Best score 64 bits
Score difference with first non-orthologous sequence - A.pisum:64 C.trachomatis:64

C4WTT3              	100.00%		P36424              	100.00%
Bootstrap support for C4WTT3 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #169. Best score 64 bits
Score difference with first non-orthologous sequence - A.pisum:64 C.trachomatis:64

J9JIV4              	100.00%		P0CE04              	100.00%
Bootstrap support for J9JIV4 as seed ortholog is 100%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #170. Best score 64 bits
Score difference with first non-orthologous sequence - A.pisum:64 C.trachomatis:64

J9K867              	100.00%		O84611              	100.00%
Bootstrap support for J9K867 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #171. Best score 62 bits
Score difference with first non-orthologous sequence - A.pisum:62 C.trachomatis:62

J9K8U0              	100.00%		O84139              	100.00%
Bootstrap support for J9K8U0 as seed ortholog is 100%.
Bootstrap support for O84139 as seed ortholog is 100%.

Group of orthologs #172. Best score 61 bits
Score difference with first non-orthologous sequence - A.pisum:61 C.trachomatis:61

C4WUC2              	100.00%		O84138              	100.00%
C4WUC3              	50.90%		
J9JVM0              	48.07%		
Bootstrap support for C4WUC2 as seed ortholog is 100%.
Bootstrap support for O84138 as seed ortholog is 100%.

Group of orthologs #173. Best score 61 bits
Score difference with first non-orthologous sequence - A.pisum:61 C.trachomatis:61

C4WV71              	100.00%		O84842              	100.00%
Bootstrap support for C4WV71 as seed ortholog is 100%.
Bootstrap support for O84842 as seed ortholog is 100%.

Group of orthologs #174. Best score 60 bits
Score difference with first non-orthologous sequence - A.pisum:60 C.trachomatis:60

J9K2I3              	100.00%		O84469              	100.00%
J9KAK1              	100.00%		
Bootstrap support for J9K2I3 as seed ortholog is 100%.
Bootstrap support for J9KAK1 as seed ortholog is 100%.
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #175. Best score 60 bits
Score difference with first non-orthologous sequence - A.pisum:60 C.trachomatis:60

J9K8U2              	100.00%		O84750              	100.00%
Bootstrap support for J9K8U2 as seed ortholog is 100%.
Bootstrap support for O84750 as seed ortholog is 100%.

Group of orthologs #176. Best score 58 bits
Score difference with first non-orthologous sequence - A.pisum:58 C.trachomatis:58

J9JL84              	100.00%		O84772              	100.00%
J9K9S2              	51.34%		O84433              	17.12%
J9JQ35              	21.11%		
Bootstrap support for J9JL84 as seed ortholog is 100%.
Bootstrap support for O84772 as seed ortholog is 100%.

Group of orthologs #177. Best score 57 bits
Score difference with first non-orthologous sequence - A.pisum:57 C.trachomatis:57

C4WSI2              	100.00%		P0A4C8              	100.00%
Bootstrap support for C4WSI2 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #178. Best score 56 bits
Score difference with first non-orthologous sequence - A.pisum:56 C.trachomatis:56

J9JT62              	100.00%		O84665              	100.00%
                    	       		O84108              	9.43%
Bootstrap support for J9JT62 as seed ortholog is 100%.
Bootstrap support for O84665 as seed ortholog is 100%.

Group of orthologs #179. Best score 56 bits
Score difference with first non-orthologous sequence - A.pisum:56 C.trachomatis:56

J9K409              	100.00%		O84689              	100.00%
Bootstrap support for J9K409 as seed ortholog is 100%.
Bootstrap support for O84689 as seed ortholog is 100%.

Group of orthologs #180. Best score 56 bits
Score difference with first non-orthologous sequence - A.pisum:56 C.trachomatis:56

J9K7K3              	100.00%		O84532              	100.00%
Bootstrap support for J9K7K3 as seed ortholog is 100%.
Bootstrap support for O84532 as seed ortholog is 100%.

Group of orthologs #181. Best score 55 bits
Score difference with first non-orthologous sequence - A.pisum:55 C.trachomatis:55

J9JNE4              	100.00%		O84395              	100.00%
J9JZE2              	78.14%		
Bootstrap support for J9JNE4 as seed ortholog is 100%.
Bootstrap support for O84395 as seed ortholog is 100%.

Group of orthologs #182. Best score 55 bits
Score difference with first non-orthologous sequence - A.pisum:55 C.trachomatis:55

J9KB74              	100.00%		O84778              	100.00%
Bootstrap support for J9KB74 as seed ortholog is 100%.
Bootstrap support for O84778 as seed ortholog is 100%.

Group of orthologs #183. Best score 52 bits
Score difference with first non-orthologous sequence - A.pisum:52 C.trachomatis:52

J9JVH9              	100.00%		O84680              	100.00%
J9KAX7              	37.93%		
J9JQB4              	26.07%		
J9JTB4              	23.03%		
J9JY47              	15.59%		
C4WW67              	14.90%		
J9K734              	13.24%		
J9JP19              	13.24%		
J9JYN1              	12.55%		
J9JWI5              	12.28%		
J9K8L1              	12.14%		
J9JTH4              	12.00%		
J9K911              	12.00%		
J9JZB1              	11.59%		
J9JXR5              	11.17%		
J9JUH5              	10.07%		
J9K5Q7              	9.79%		
J9JXP3              	9.52%		
J9JQ78              	9.52%		
J9JZ83              	9.38%		
J9JQJ9              	9.24%		
J9K4U2              	8.83%		
J9JQD5              	7.86%		
J9K9C4              	7.59%		
J9JUX2              	7.45%		
J9JP30              	6.90%		
J9K5A3              	5.66%		
J9JJH8              	5.52%		
J9K6N4              	5.24%		
J9LM86              	5.24%		
Bootstrap support for J9JVH9 as seed ortholog is 100%.
Bootstrap support for O84680 as seed ortholog is 100%.

Group of orthologs #184. Best score 52 bits
Score difference with first non-orthologous sequence - A.pisum:52 C.trachomatis:52

C4WW30              	100.00%		O84779              	100.00%
J9K7Y0              	31.79%		
Bootstrap support for C4WW30 as seed ortholog is 100%.
Bootstrap support for O84779 as seed ortholog is 100%.

Group of orthologs #185. Best score 52 bits
Score difference with first non-orthologous sequence - A.pisum:52 C.trachomatis:52

J9JWH8              	100.00%		O84684              	100.00%
J9JR21              	76.92%		
Bootstrap support for J9JWH8 as seed ortholog is 100%.
Bootstrap support for O84684 as seed ortholog is 100%.

Group of orthologs #186. Best score 52 bits
Score difference with first non-orthologous sequence - A.pisum:52 C.trachomatis:52

C4WUE9              	100.00%		O84127              	100.00%
Bootstrap support for C4WUE9 as seed ortholog is 100%.
Bootstrap support for O84127 as seed ortholog is 100%.

Group of orthologs #187. Best score 52 bits
Score difference with first non-orthologous sequence - A.pisum:52 C.trachomatis:52

J9K9E4              	100.00%		O84792              	100.00%
Bootstrap support for J9K9E4 as seed ortholog is 100%.
Bootstrap support for O84792 as seed ortholog is 100%.

Group of orthologs #188. Best score 52 bits
Score difference with first non-orthologous sequence - A.pisum:52 C.trachomatis:52

J9LYE1              	100.00%		O84764              	100.00%
Bootstrap support for J9LYE1 as seed ortholog is 100%.
Bootstrap support for O84764 as seed ortholog is 100%.

Group of orthologs #189. Best score 51 bits
Score difference with first non-orthologous sequence - A.pisum:51 C.trachomatis:51

J9JRD4              	100.00%		O84633              	100.00%
Bootstrap support for J9JRD4 as seed ortholog is 100%.
Bootstrap support for O84633 as seed ortholog is 100%.

Group of orthologs #190. Best score 51 bits
Score difference with first non-orthologous sequence - A.pisum:51 C.trachomatis:51

J9JYI1              	100.00%		O84776              	100.00%
Bootstrap support for J9JYI1 as seed ortholog is 100%.
Bootstrap support for O84776 as seed ortholog is 100%.

Group of orthologs #191. Best score 50 bits
Score difference with first non-orthologous sequence - A.pisum:50 C.trachomatis:50

J9K7V3              	100.00%		O84826              	100.00%
J9K186              	71.91%		
C4WRJ7              	7.51%		
Bootstrap support for J9K7V3 as seed ortholog is 100%.
Bootstrap support for O84826 as seed ortholog is 100%.

Group of orthologs #192. Best score 50 bits
Score difference with first non-orthologous sequence - A.pisum:50 C.trachomatis:50

J9JYG1              	100.00%		O84496              	100.00%
J9K9Q0              	16.57%		
Bootstrap support for J9JYG1 as seed ortholog is 100%.
Bootstrap support for O84496 as seed ortholog is 100%.

Group of orthologs #193. Best score 50 bits
Score difference with first non-orthologous sequence - A.pisum:50 C.trachomatis:50

J9JZQ5              	100.00%		O84527              	100.00%
Bootstrap support for J9JZQ5 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #194. Best score 50 bits
Score difference with first non-orthologous sequence - A.pisum:50 C.trachomatis:50

J9K1S6              	100.00%		O84219              	100.00%
Bootstrap support for J9K1S6 as seed ortholog is 100%.
Bootstrap support for O84219 as seed ortholog is 100%.

Group of orthologs #195. Best score 47 bits
Score difference with first non-orthologous sequence - A.pisum:47 C.trachomatis:47

C4WYG5              	100.00%		P0CE02              	100.00%
Bootstrap support for C4WYG5 as seed ortholog is 100%.
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #196. Best score 47 bits
Score difference with first non-orthologous sequence - A.pisum:47 C.trachomatis:47

J9K1H7              	100.00%		O84777              	100.00%
Bootstrap support for J9K1H7 as seed ortholog is 100%.
Bootstrap support for O84777 as seed ortholog is 100%.

Group of orthologs #197. Best score 47 bits
Score difference with first non-orthologous sequence - A.pisum:47 C.trachomatis:47

J9LP49              	100.00%		O84473              	100.00%
Bootstrap support for J9LP49 as seed ortholog is 100%.
Bootstrap support for O84473 as seed ortholog is 100%.

Group of orthologs #198. Best score 46 bits
Score difference with first non-orthologous sequence - A.pisum:46 C.trachomatis:46

J9K977              	100.00%		O84032              	100.00%
Bootstrap support for J9K977 as seed ortholog is 100%.
Bootstrap support for O84032 as seed ortholog is 100%.

Group of orthologs #199. Best score 42 bits
Score difference with first non-orthologous sequence - A.pisum:42 C.trachomatis:42

C4WS14              	100.00%		P0CE05              	100.00%
Bootstrap support for C4WS14 as seed ortholog is 100%.
Bootstrap support for P0CE05 as seed ortholog is 100%.

Group of orthologs #200. Best score 42 bits
Score difference with first non-orthologous sequence - A.pisum:42 C.trachomatis:42

J9JW85              	100.00%		O84655              	100.00%
Bootstrap support for J9JW85 as seed ortholog is 100%.
Bootstrap support for O84655 as seed ortholog is 100%.