###################################
1467 groups of orthologs
1542 in-paralogs from A.gossypii
2008 in-paralogs from C.japonica
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 2990 bits
Score difference with first non-orthologous sequence - A.gossypii:2990 C.japonica:2990

Q75D15              	100.00%		K7H9K0              	100.00%
Bootstrap support for Q75D15 as seed ortholog is 100%.
Bootstrap support for K7H9K0 as seed ortholog is 100%.

Group of orthologs #2. Best score 1987 bits
Score difference with first non-orthologous sequence - A.gossypii:1987 C.japonica:1249

Q9C1M7              	100.00%		H2WEJ8              	100.00%
Bootstrap support for Q9C1M7 as seed ortholog is 100%.
Bootstrap support for H2WEJ8 as seed ortholog is 100%.

Group of orthologs #3. Best score 1693 bits
Score difference with first non-orthologous sequence - A.gossypii:672 C.japonica:1693

Q75BK8              	100.00%		H2WCA3              	100.00%
Bootstrap support for Q75BK8 as seed ortholog is 100%.
Bootstrap support for H2WCA3 as seed ortholog is 100%.

Group of orthologs #4. Best score 1544 bits
Score difference with first non-orthologous sequence - A.gossypii:1544 C.japonica:1544

Q756A8              	100.00%		H2W8N8              	100.00%
Bootstrap support for Q756A8 as seed ortholog is 100%.
Bootstrap support for H2W8N8 as seed ortholog is 100%.

Group of orthologs #5. Best score 1518 bits
Score difference with first non-orthologous sequence - A.gossypii:1518 C.japonica:1518

Q759I7              	100.00%		H2VL49              	100.00%
Bootstrap support for Q759I7 as seed ortholog is 100%.
Bootstrap support for H2VL49 as seed ortholog is 100%.

Group of orthologs #6. Best score 1345 bits
Score difference with first non-orthologous sequence - A.gossypii:1345 C.japonica:1345

Q753Q4              	100.00%		K7HCA1              	100.00%
Bootstrap support for Q753Q4 as seed ortholog is 100%.
Bootstrap support for K7HCA1 as seed ortholog is 100%.

Group of orthologs #7. Best score 1291 bits
Score difference with first non-orthologous sequence - A.gossypii:930 C.japonica:1291

Q75A34              	100.00%		K7GY35              	100.00%
Bootstrap support for Q75A34 as seed ortholog is 100%.
Bootstrap support for K7GY35 as seed ortholog is 100%.

Group of orthologs #8. Best score 1146 bits
Score difference with first non-orthologous sequence - A.gossypii:1003 C.japonica:1022

Q754C8              	100.00%		H2WJK3              	100.00%
Bootstrap support for Q754C8 as seed ortholog is 100%.
Bootstrap support for H2WJK3 as seed ortholog is 100%.

Group of orthologs #9. Best score 1119 bits
Score difference with first non-orthologous sequence - A.gossypii:1119 C.japonica:1119

Q75B52              	100.00%		H2WW66              	100.00%
Bootstrap support for Q75B52 as seed ortholog is 100%.
Bootstrap support for H2WW66 as seed ortholog is 100%.

Group of orthologs #10. Best score 1114 bits
Score difference with first non-orthologous sequence - A.gossypii:1114 C.japonica:1114

Q75EK8              	100.00%		H2WA02              	100.00%
Bootstrap support for Q75EK8 as seed ortholog is 100%.
Bootstrap support for H2WA02 as seed ortholog is 100%.

Group of orthologs #11. Best score 1106 bits
Score difference with first non-orthologous sequence - A.gossypii:664 C.japonica:775

Q754B2              	100.00%		H2WIY5              	100.00%
                    	       		H2WKT2              	63.77%
Bootstrap support for Q754B2 as seed ortholog is 100%.
Bootstrap support for H2WIY5 as seed ortholog is 100%.

Group of orthologs #12. Best score 1072 bits
Score difference with first non-orthologous sequence - A.gossypii:558 C.japonica:1072

Q756K2              	100.00%		H2VQC4              	100.00%
Bootstrap support for Q756K2 as seed ortholog is 100%.
Bootstrap support for H2VQC4 as seed ortholog is 100%.

Group of orthologs #13. Best score 1071 bits
Score difference with first non-orthologous sequence - A.gossypii:269 C.japonica:1071

Q75AI4              	100.00%		H2VWB4              	100.00%
Bootstrap support for Q75AI4 as seed ortholog is 100%.
Bootstrap support for H2VWB4 as seed ortholog is 100%.

Group of orthologs #14. Best score 1052 bits
Score difference with first non-orthologous sequence - A.gossypii:1052 C.japonica:461

Q755V8              	100.00%		H2WBZ3              	100.00%
Bootstrap support for Q755V8 as seed ortholog is 100%.
Bootstrap support for H2WBZ3 as seed ortholog is 100%.

Group of orthologs #15. Best score 1047 bits
Score difference with first non-orthologous sequence - A.gossypii:239 C.japonica:857

Q75AE9              	100.00%		H2VQM3              	100.00%
Bootstrap support for Q75AE9 as seed ortholog is 99%.
Bootstrap support for H2VQM3 as seed ortholog is 100%.

Group of orthologs #16. Best score 980 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.japonica:134

Q756R7              	100.00%		H2WA00              	100.00%
Q754F6              	28.04%		
Bootstrap support for Q756R7 as seed ortholog is 100%.
Bootstrap support for H2WA00 as seed ortholog is 99%.

Group of orthologs #17. Best score 966 bits
Score difference with first non-orthologous sequence - A.gossypii:966 C.japonica:966

Q74Z60              	100.00%		H2WN49              	100.00%
Bootstrap support for Q74Z60 as seed ortholog is 100%.
Bootstrap support for H2WN49 as seed ortholog is 100%.

Group of orthologs #18. Best score 959 bits
Score difference with first non-orthologous sequence - A.gossypii:785 C.japonica:430

Q75EP5              	100.00%		H2VK29              	100.00%
Bootstrap support for Q75EP5 as seed ortholog is 100%.
Bootstrap support for H2VK29 as seed ortholog is 100%.

Group of orthologs #19. Best score 955 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.japonica:269

Q750B0              	100.00%		H2VX23              	100.00%
                    	       		H2WL32              	12.30%
Bootstrap support for Q750B0 as seed ortholog is 99%.
Bootstrap support for H2VX23 as seed ortholog is 99%.

Group of orthologs #20. Best score 954 bits
Score difference with first non-orthologous sequence - A.gossypii:303 C.japonica:260

Q75EQ9              	100.00%		H2VUT3              	100.00%
Bootstrap support for Q75EQ9 as seed ortholog is 100%.
Bootstrap support for H2VUT3 as seed ortholog is 100%.

Group of orthologs #21. Best score 936 bits
Score difference with first non-orthologous sequence - A.gossypii:517 C.japonica:652

Q75AK6              	100.00%		H2VTX2              	100.00%
Bootstrap support for Q75AK6 as seed ortholog is 100%.
Bootstrap support for H2VTX2 as seed ortholog is 100%.

Group of orthologs #22. Best score 935 bits
Score difference with first non-orthologous sequence - A.gossypii:661 C.japonica:935

Q75A42              	100.00%		H2VWS1              	100.00%
Bootstrap support for Q75A42 as seed ortholog is 100%.
Bootstrap support for H2VWS1 as seed ortholog is 100%.

Group of orthologs #23. Best score 922 bits
Score difference with first non-orthologous sequence - A.gossypii:922 C.japonica:922

Q759E3              	100.00%		H2W0V9              	100.00%
Bootstrap support for Q759E3 as seed ortholog is 100%.
Bootstrap support for H2W0V9 as seed ortholog is 100%.

Group of orthologs #24. Best score 904 bits
Score difference with first non-orthologous sequence - A.gossypii:639 C.japonica:904

Q755K6              	100.00%		H2VJK2              	100.00%
Bootstrap support for Q755K6 as seed ortholog is 100%.
Bootstrap support for H2VJK2 as seed ortholog is 100%.

Group of orthologs #25. Best score 860 bits
Score difference with first non-orthologous sequence - A.gossypii:860 C.japonica:860

Q75DB0              	100.00%		H2VSQ0              	100.00%
Bootstrap support for Q75DB0 as seed ortholog is 100%.
Bootstrap support for H2VSQ0 as seed ortholog is 100%.

Group of orthologs #26. Best score 850 bits
Score difference with first non-orthologous sequence - A.gossypii:850 C.japonica:233

Q8J2M3              	100.00%		H2WES9              	100.00%
Bootstrap support for Q8J2M3 as seed ortholog is 100%.
Bootstrap support for H2WES9 as seed ortholog is 100%.

Group of orthologs #27. Best score 833 bits
Score difference with first non-orthologous sequence - A.gossypii:833 C.japonica:833

Q75DS1              	100.00%		H2W645              	100.00%
Bootstrap support for Q75DS1 as seed ortholog is 100%.
Bootstrap support for H2W645 as seed ortholog is 100%.

Group of orthologs #28. Best score 833 bits
Score difference with first non-orthologous sequence - A.gossypii:833 C.japonica:298

Q755Z3              	100.00%		H2WM83              	100.00%
Bootstrap support for Q755Z3 as seed ortholog is 100%.
Bootstrap support for H2WM83 as seed ortholog is 100%.

Group of orthologs #29. Best score 827 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.japonica:122

Q75C78              	100.00%		H2VNB5              	100.00%
                    	       		H2W3Y4              	58.12%
Bootstrap support for Q75C78 as seed ortholog is 99%.
Bootstrap support for H2VNB5 as seed ortholog is 99%.

Group of orthologs #30. Best score 824 bits
Score difference with first non-orthologous sequence - A.gossypii:824 C.japonica:824

Q75D82              	100.00%		H2VUX2              	100.00%
Bootstrap support for Q75D82 as seed ortholog is 100%.
Bootstrap support for H2VUX2 as seed ortholog is 100%.

Group of orthologs #31. Best score 810 bits
Score difference with first non-orthologous sequence - A.gossypii:810 C.japonica:810

Q75C64              	100.00%		H2X0Y2              	100.00%
                    	       		H2W315              	54.14%
Bootstrap support for Q75C64 as seed ortholog is 100%.
Bootstrap support for H2X0Y2 as seed ortholog is 100%.

Group of orthologs #32. Best score 805 bits
Score difference with first non-orthologous sequence - A.gossypii:805 C.japonica:805

Q754V7              	100.00%		H2VJ69              	100.00%
Q752N7              	16.67%		
Bootstrap support for Q754V7 as seed ortholog is 100%.
Bootstrap support for H2VJ69 as seed ortholog is 100%.

Group of orthologs #33. Best score 805 bits
Score difference with first non-orthologous sequence - A.gossypii:249 C.japonica:251

Q753R1              	100.00%		H2VRY7              	100.00%
Bootstrap support for Q753R1 as seed ortholog is 100%.
Bootstrap support for H2VRY7 as seed ortholog is 100%.

Group of orthologs #34. Best score 797 bits
Score difference with first non-orthologous sequence - A.gossypii:797 C.japonica:201

Q75C49              	100.00%		H2WE16              	100.00%
                    	       		H2VKG6              	32.01%
                    	       		H2W609              	14.32%
                    	       		H2W8W8              	13.26%
                    	       		H2VLI7              	13.03%
                    	       		H2VUU0              	11.08%
                    	       		H2VJX1              	7.31%
Bootstrap support for Q75C49 as seed ortholog is 100%.
Bootstrap support for H2WE16 as seed ortholog is 97%.

Group of orthologs #35. Best score 796 bits
Score difference with first non-orthologous sequence - A.gossypii:796 C.japonica:796

Q9UVJ8              	100.00%		H2VUQ8              	100.00%
Bootstrap support for Q9UVJ8 as seed ortholog is 100%.
Bootstrap support for H2VUQ8 as seed ortholog is 100%.

Group of orthologs #36. Best score 761 bits
Score difference with first non-orthologous sequence - A.gossypii:509 C.japonica:518

P41752              	100.00%		H2WAF6              	100.00%
Bootstrap support for P41752 as seed ortholog is 100%.
Bootstrap support for H2WAF6 as seed ortholog is 100%.

Group of orthologs #37. Best score 754 bits
Score difference with first non-orthologous sequence - A.gossypii:754 C.japonica:754

Q753N2              	100.00%		H2WFN1              	100.00%
Bootstrap support for Q753N2 as seed ortholog is 100%.
Bootstrap support for H2WFN1 as seed ortholog is 100%.

Group of orthologs #38. Best score 751 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:224

Q759C7              	100.00%		K7H518              	100.00%
Bootstrap support for Q759C7 as seed ortholog is 93%.
Bootstrap support for K7H518 as seed ortholog is 99%.

Group of orthologs #39. Best score 748 bits
Score difference with first non-orthologous sequence - A.gossypii:748 C.japonica:657

Q74ZS3              	100.00%		H2WD39              	100.00%
Bootstrap support for Q74ZS3 as seed ortholog is 100%.
Bootstrap support for H2WD39 as seed ortholog is 100%.

Group of orthologs #40. Best score 746 bits
Score difference with first non-orthologous sequence - A.gossypii:746 C.japonica:746

Q755D6              	100.00%		H2VI22              	100.00%
Bootstrap support for Q755D6 as seed ortholog is 100%.
Bootstrap support for H2VI22 as seed ortholog is 100%.

Group of orthologs #41. Best score 741 bits
Score difference with first non-orthologous sequence - A.gossypii:603 C.japonica:637

Q753G0              	100.00%		H2VMU7              	100.00%
Bootstrap support for Q753G0 as seed ortholog is 100%.
Bootstrap support for H2VMU7 as seed ortholog is 85%.

Group of orthologs #42. Best score 731 bits
Score difference with first non-orthologous sequence - A.gossypii:731 C.japonica:731

Q751H8              	100.00%		H2WD33              	100.00%
Bootstrap support for Q751H8 as seed ortholog is 100%.
Bootstrap support for H2WD33 as seed ortholog is 100%.

Group of orthologs #43. Best score 727 bits
Score difference with first non-orthologous sequence - A.gossypii:727 C.japonica:727

Q75CP0              	100.00%		H2WJ24              	100.00%
Q756S6              	36.07%		
Bootstrap support for Q75CP0 as seed ortholog is 100%.
Bootstrap support for H2WJ24 as seed ortholog is 100%.

Group of orthologs #44. Best score 723 bits
Score difference with first non-orthologous sequence - A.gossypii:345 C.japonica:206

Q74ZS5              	100.00%		H2WE03              	100.00%
Bootstrap support for Q74ZS5 as seed ortholog is 100%.
Bootstrap support for H2WE03 as seed ortholog is 99%.

Group of orthologs #45. Best score 719 bits
Score difference with first non-orthologous sequence - A.gossypii:719 C.japonica:719

Q75DQ3              	100.00%		K7GUH8              	100.00%
Bootstrap support for Q75DQ3 as seed ortholog is 100%.
Bootstrap support for K7GUH8 as seed ortholog is 100%.

Group of orthologs #46. Best score 717 bits
Score difference with first non-orthologous sequence - A.gossypii:717 C.japonica:717

Q75BE4              	100.00%		H2VJT5              	100.00%
                    	       		H2VP51              	50.76%
Bootstrap support for Q75BE4 as seed ortholog is 100%.
Bootstrap support for H2VJT5 as seed ortholog is 100%.

Group of orthologs #47. Best score 717 bits
Score difference with first non-orthologous sequence - A.gossypii:717 C.japonica:717

Q75D54              	100.00%		H2WJ19              	100.00%
Bootstrap support for Q75D54 as seed ortholog is 100%.
Bootstrap support for H2WJ19 as seed ortholog is 100%.

Group of orthologs #48. Best score 712 bits
Score difference with first non-orthologous sequence - A.gossypii:712 C.japonica:178

Q758Q9              	100.00%		H2VM85              	100.00%
Bootstrap support for Q758Q9 as seed ortholog is 100%.
Bootstrap support for H2VM85 as seed ortholog is 99%.

Group of orthologs #49. Best score 712 bits
Score difference with first non-orthologous sequence - A.gossypii:712 C.japonica:712

Q75AP8              	100.00%		K7H1A3              	100.00%
Bootstrap support for Q75AP8 as seed ortholog is 100%.
Bootstrap support for K7H1A3 as seed ortholog is 100%.

Group of orthologs #50. Best score 708 bits
Score difference with first non-orthologous sequence - A.gossypii:708 C.japonica:243

Q759C3              	100.00%		K7HA22              	100.00%
Bootstrap support for Q759C3 as seed ortholog is 100%.
Bootstrap support for K7HA22 as seed ortholog is 99%.

Group of orthologs #51. Best score 707 bits
Score difference with first non-orthologous sequence - A.gossypii:468 C.japonica:393

Q75BP6              	100.00%		H2VTQ7              	100.00%
                    	       		H2VXN4              	100.00%
                    	       		H2VVE4              	73.87%
                    	       		H2VXL4              	71.36%
                    	       		H2WRJ4              	64.42%
Bootstrap support for Q75BP6 as seed ortholog is 100%.
Bootstrap support for H2VTQ7 as seed ortholog is 100%.
Bootstrap support for H2VXN4 as seed ortholog is 100%.

Group of orthologs #52. Best score 705 bits
Score difference with first non-orthologous sequence - A.gossypii:498 C.japonica:98

Q752Y2              	100.00%		H2VJA5              	100.00%
                    	       		H2W8E3              	89.15%
                    	       		H2VRC4              	41.04%
                    	       		H2WHA1              	25.00%
                    	       		H2W667              	12.26%
Bootstrap support for Q752Y2 as seed ortholog is 100%.
Bootstrap support for H2VJA5 as seed ortholog is 99%.

Group of orthologs #53. Best score 698 bits
Score difference with first non-orthologous sequence - A.gossypii:369 C.japonica:450

Q75CZ5              	100.00%		H2WCF4              	100.00%
Bootstrap support for Q75CZ5 as seed ortholog is 100%.
Bootstrap support for H2WCF4 as seed ortholog is 100%.

Group of orthologs #54. Best score 692 bits
Score difference with first non-orthologous sequence - A.gossypii:299 C.japonica:291

Q75D00              	100.00%		H2XE92              	100.00%
                    	       		H2WNE8              	38.24%
Bootstrap support for Q75D00 as seed ortholog is 100%.
Bootstrap support for H2XE92 as seed ortholog is 100%.

Group of orthologs #55. Best score 691 bits
Score difference with first non-orthologous sequence - A.gossypii:414 C.japonica:691

Q753Z4              	100.00%		H2WQL9              	100.00%
Bootstrap support for Q753Z4 as seed ortholog is 100%.
Bootstrap support for H2WQL9 as seed ortholog is 100%.

Group of orthologs #56. Best score 679 bits
Score difference with first non-orthologous sequence - A.gossypii:679 C.japonica:679

Q75DY5              	100.00%		H2VR32              	100.00%
Bootstrap support for Q75DY5 as seed ortholog is 100%.
Bootstrap support for H2VR32 as seed ortholog is 100%.

Group of orthologs #57. Best score 664 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:80

Q75E97              	100.00%		K7GYM1              	100.00%
Bootstrap support for Q75E97 as seed ortholog is 99%.
Bootstrap support for K7GYM1 as seed ortholog is 96%.

Group of orthologs #58. Best score 662 bits
Score difference with first non-orthologous sequence - A.gossypii:335 C.japonica:662

Q753A6              	100.00%		H2VRV3              	100.00%
Bootstrap support for Q753A6 as seed ortholog is 100%.
Bootstrap support for H2VRV3 as seed ortholog is 100%.

Group of orthologs #59. Best score 658 bits
Score difference with first non-orthologous sequence - A.gossypii:658 C.japonica:658

Q75ES1              	100.00%		H2VNV9              	100.00%
Bootstrap support for Q75ES1 as seed ortholog is 100%.
Bootstrap support for H2VNV9 as seed ortholog is 100%.

Group of orthologs #60. Best score 642 bits
Score difference with first non-orthologous sequence - A.gossypii:300 C.japonica:642

Q755Z2              	100.00%		H2WJ27              	100.00%
Q752L2              	22.04%		
Bootstrap support for Q755Z2 as seed ortholog is 100%.
Bootstrap support for H2WJ27 as seed ortholog is 100%.

Group of orthologs #61. Best score 639 bits
Score difference with first non-orthologous sequence - A.gossypii:639 C.japonica:487

Q75ED6              	100.00%		K7H102              	100.00%
Bootstrap support for Q75ED6 as seed ortholog is 100%.
Bootstrap support for K7H102 as seed ortholog is 100%.

Group of orthologs #62. Best score 637 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.japonica:637

Q750C0              	100.00%		H2VYQ6              	100.00%
Bootstrap support for Q750C0 as seed ortholog is 100%.
Bootstrap support for H2VYQ6 as seed ortholog is 100%.

Group of orthologs #63. Best score 634 bits
Score difference with first non-orthologous sequence - A.gossypii:435 C.japonica:634

Q75D18              	100.00%		H2VUB3              	100.00%
Bootstrap support for Q75D18 as seed ortholog is 100%.
Bootstrap support for H2VUB3 as seed ortholog is 100%.

Group of orthologs #64. Best score 631 bits
Score difference with first non-orthologous sequence - A.gossypii:354 C.japonica:476

Q755V3              	100.00%		H2VHQ1              	100.00%
Bootstrap support for Q755V3 as seed ortholog is 100%.
Bootstrap support for H2VHQ1 as seed ortholog is 100%.

Group of orthologs #65. Best score 626 bits
Score difference with first non-orthologous sequence - A.gossypii:626 C.japonica:198

Q757M5              	100.00%		H2VV12              	100.00%
Bootstrap support for Q757M5 as seed ortholog is 100%.
Bootstrap support for H2VV12 as seed ortholog is 100%.

Group of orthologs #66. Best score 626 bits
Score difference with first non-orthologous sequence - A.gossypii:626 C.japonica:626

Q758L0              	100.00%		H2WMC1              	100.00%
Bootstrap support for Q758L0 as seed ortholog is 100%.
Bootstrap support for H2WMC1 as seed ortholog is 100%.

Group of orthologs #67. Best score 624 bits
Score difference with first non-orthologous sequence - A.gossypii:624 C.japonica:624

Q753T3              	100.00%		H2WF06              	100.00%
Bootstrap support for Q753T3 as seed ortholog is 100%.
Bootstrap support for H2WF06 as seed ortholog is 100%.

Group of orthologs #68. Best score 621 bits
Score difference with first non-orthologous sequence - A.gossypii:539 C.japonica:621

Q754B5              	100.00%		H2VRM4              	100.00%
Bootstrap support for Q754B5 as seed ortholog is 100%.
Bootstrap support for H2VRM4 as seed ortholog is 100%.

Group of orthologs #69. Best score 618 bits
Score difference with first non-orthologous sequence - A.gossypii:320 C.japonica:618

Q754K5              	100.00%		H2VYE2              	100.00%
Bootstrap support for Q754K5 as seed ortholog is 100%.
Bootstrap support for H2VYE2 as seed ortholog is 100%.

Group of orthologs #70. Best score 617 bits
Score difference with first non-orthologous sequence - A.gossypii:617 C.japonica:617

Q75D48              	100.00%		H2WFA9              	100.00%
Bootstrap support for Q75D48 as seed ortholog is 100%.
Bootstrap support for H2WFA9 as seed ortholog is 100%.

Group of orthologs #71. Best score 615 bits
Score difference with first non-orthologous sequence - A.gossypii:615 C.japonica:615

Q75CE3              	100.00%		H2VU08              	100.00%
Bootstrap support for Q75CE3 as seed ortholog is 100%.
Bootstrap support for H2VU08 as seed ortholog is 100%.

Group of orthologs #72. Best score 611 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.japonica:611

Q75AE3              	100.00%		H2VHF7              	100.00%
Bootstrap support for Q75AE3 as seed ortholog is 100%.
Bootstrap support for H2VHF7 as seed ortholog is 100%.

Group of orthologs #73. Best score 603 bits
Score difference with first non-orthologous sequence - A.gossypii:351 C.japonica:492

Q751B1              	100.00%		H2W6X4              	100.00%
Bootstrap support for Q751B1 as seed ortholog is 100%.
Bootstrap support for H2W6X4 as seed ortholog is 100%.

Group of orthologs #74. Best score 602 bits
Score difference with first non-orthologous sequence - A.gossypii:466 C.japonica:466

Q752K7              	100.00%		H2WNB8              	100.00%
                    	       		K7H4X2              	15.35%
Bootstrap support for Q752K7 as seed ortholog is 100%.
Bootstrap support for H2WNB8 as seed ortholog is 100%.

Group of orthologs #75. Best score 601 bits
Score difference with first non-orthologous sequence - A.gossypii:601 C.japonica:601

Q750T6              	100.00%		H2VQH4              	100.00%
Bootstrap support for Q750T6 as seed ortholog is 100%.
Bootstrap support for H2VQH4 as seed ortholog is 100%.

Group of orthologs #76. Best score 600 bits
Score difference with first non-orthologous sequence - A.gossypii:600 C.japonica:600

Q75DS7              	100.00%		H2VWX3              	100.00%
Bootstrap support for Q75DS7 as seed ortholog is 100%.
Bootstrap support for H2VWX3 as seed ortholog is 100%.

Group of orthologs #77. Best score 597 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.japonica:120

Q75F90              	100.00%		H2WQZ7              	100.00%
Bootstrap support for Q75F90 as seed ortholog is 95%.
Bootstrap support for H2WQZ7 as seed ortholog is 98%.

Group of orthologs #78. Best score 585 bits
Score difference with first non-orthologous sequence - A.gossypii:585 C.japonica:585

Q74Z74              	100.00%		H2VP84              	100.00%
Bootstrap support for Q74Z74 as seed ortholog is 100%.
Bootstrap support for H2VP84 as seed ortholog is 100%.

Group of orthologs #79. Best score 584 bits
Score difference with first non-orthologous sequence - A.gossypii:584 C.japonica:289

Q750J4              	100.00%		H2WEA2              	100.00%
                    	       		H2VKW1              	48.89%
Bootstrap support for Q750J4 as seed ortholog is 100%.
Bootstrap support for H2WEA2 as seed ortholog is 100%.

Group of orthologs #80. Best score 582 bits
Score difference with first non-orthologous sequence - A.gossypii:582 C.japonica:582

Q75BD7              	100.00%		H2VVY8              	100.00%
Bootstrap support for Q75BD7 as seed ortholog is 100%.
Bootstrap support for H2VVY8 as seed ortholog is 100%.

Group of orthologs #81. Best score 581 bits
Score difference with first non-orthologous sequence - A.gossypii:581 C.japonica:581

Q752Y8              	100.00%		H2VMG3              	100.00%
Bootstrap support for Q752Y8 as seed ortholog is 100%.
Bootstrap support for H2VMG3 as seed ortholog is 100%.

Group of orthologs #82. Best score 581 bits
Score difference with first non-orthologous sequence - A.gossypii:287 C.japonica:411

Q74Z73              	100.00%		K7GUU4              	100.00%
Bootstrap support for Q74Z73 as seed ortholog is 100%.
Bootstrap support for K7GUU4 as seed ortholog is 100%.

Group of orthologs #83. Best score 580 bits
Score difference with first non-orthologous sequence - A.gossypii:580 C.japonica:448

Q756T4              	100.00%		K7HAZ6              	100.00%
Bootstrap support for Q756T4 as seed ortholog is 100%.
Bootstrap support for K7HAZ6 as seed ortholog is 100%.

Group of orthologs #84. Best score 578 bits
Score difference with first non-orthologous sequence - A.gossypii:578 C.japonica:578

Q756H2              	100.00%		H2W490              	100.00%
Bootstrap support for Q756H2 as seed ortholog is 100%.
Bootstrap support for H2W490 as seed ortholog is 100%.

Group of orthologs #85. Best score 575 bits
Score difference with first non-orthologous sequence - A.gossypii:575 C.japonica:421

Q752R1              	100.00%		H2WPW4              	100.00%
Bootstrap support for Q752R1 as seed ortholog is 100%.
Bootstrap support for H2WPW4 as seed ortholog is 100%.

Group of orthologs #86. Best score 574 bits
Score difference with first non-orthologous sequence - A.gossypii:574 C.japonica:181

Q755Q5              	100.00%		H2W817              	100.00%
Q758H0              	20.77%		
Bootstrap support for Q755Q5 as seed ortholog is 100%.
Bootstrap support for H2W817 as seed ortholog is 99%.

Group of orthologs #87. Best score 574 bits
Score difference with first non-orthologous sequence - A.gossypii:574 C.japonica:574

Q757I5              	100.00%		H2VS21              	100.00%
Bootstrap support for Q757I5 as seed ortholog is 100%.
Bootstrap support for H2VS21 as seed ortholog is 100%.

Group of orthologs #88. Best score 571 bits
Score difference with first non-orthologous sequence - A.gossypii:571 C.japonica:571

Q751L7              	100.00%		H2W7I0              	100.00%
Bootstrap support for Q751L7 as seed ortholog is 100%.
Bootstrap support for H2W7I0 as seed ortholog is 100%.

Group of orthologs #89. Best score 568 bits
Score difference with first non-orthologous sequence - A.gossypii:568 C.japonica:568

Q752M7              	100.00%		H2VR40              	100.00%
Bootstrap support for Q752M7 as seed ortholog is 100%.
Bootstrap support for H2VR40 as seed ortholog is 100%.

Group of orthologs #90. Best score 566 bits
Score difference with first non-orthologous sequence - A.gossypii:386 C.japonica:283

Q756K0              	100.00%		H2WEG0              	100.00%
Bootstrap support for Q756K0 as seed ortholog is 100%.
Bootstrap support for H2WEG0 as seed ortholog is 100%.

Group of orthologs #91. Best score 564 bits
Score difference with first non-orthologous sequence - A.gossypii:411 C.japonica:564

Q757G0              	100.00%		H2VZD6              	100.00%
Bootstrap support for Q757G0 as seed ortholog is 100%.
Bootstrap support for H2VZD6 as seed ortholog is 100%.

Group of orthologs #92. Best score 557 bits
Score difference with first non-orthologous sequence - A.gossypii:273 C.japonica:295

Q754T2              	100.00%		H2WKE4              	100.00%
                    	       		H2WPY3              	42.22%
                    	       		K7H509              	25.75%
Bootstrap support for Q754T2 as seed ortholog is 99%.
Bootstrap support for H2WKE4 as seed ortholog is 99%.

Group of orthologs #93. Best score 554 bits
Score difference with first non-orthologous sequence - A.gossypii:250 C.japonica:381

Q75BS4              	100.00%		H2WKJ1              	100.00%
Bootstrap support for Q75BS4 as seed ortholog is 100%.
Bootstrap support for H2WKJ1 as seed ortholog is 100%.

Group of orthologs #94. Best score 553 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.japonica:40

Q754A6              	100.00%		H2W5Y1              	100.00%
Bootstrap support for Q754A6 as seed ortholog is 100%.
Bootstrap support for H2W5Y1 as seed ortholog is 97%.

Group of orthologs #95. Best score 553 bits
Score difference with first non-orthologous sequence - A.gossypii:553 C.japonica:553

Q75EU2              	100.00%		H2WKX2              	100.00%
Bootstrap support for Q75EU2 as seed ortholog is 100%.
Bootstrap support for H2WKX2 as seed ortholog is 100%.

Group of orthologs #96. Best score 552 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:154

Q74Z12              	100.00%		H2VUW8              	100.00%
                    	       		H2VPG4              	41.22%
                    	       		H2WC95              	6.59%
Bootstrap support for Q74Z12 as seed ortholog is 99%.
Bootstrap support for H2VUW8 as seed ortholog is 99%.

Group of orthologs #97. Best score 552 bits
Score difference with first non-orthologous sequence - A.gossypii:173 C.japonica:152

Q757P4              	100.00%		K7H6I1              	100.00%
Bootstrap support for Q757P4 as seed ortholog is 99%.
Bootstrap support for K7H6I1 as seed ortholog is 99%.

Group of orthologs #98. Best score 549 bits
Score difference with first non-orthologous sequence - A.gossypii:549 C.japonica:549

Q75BQ6              	100.00%		H2W4W2              	100.00%
Bootstrap support for Q75BQ6 as seed ortholog is 100%.
Bootstrap support for H2W4W2 as seed ortholog is 100%.

Group of orthologs #99. Best score 547 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:547

Q75A77              	100.00%		H2WL50              	100.00%
Bootstrap support for Q75A77 as seed ortholog is 99%.
Bootstrap support for H2WL50 as seed ortholog is 100%.

Group of orthologs #100. Best score 544 bits
Score difference with first non-orthologous sequence - A.gossypii:332 C.japonica:544

Q756Z5              	100.00%		H2WAN6              	100.00%
Bootstrap support for Q756Z5 as seed ortholog is 100%.
Bootstrap support for H2WAN6 as seed ortholog is 100%.

Group of orthologs #101. Best score 543 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.japonica:543

Q75CF8              	100.00%		H2VH42              	100.00%
Bootstrap support for Q75CF8 as seed ortholog is 100%.
Bootstrap support for H2VH42 as seed ortholog is 100%.

Group of orthologs #102. Best score 542 bits
Score difference with first non-orthologous sequence - A.gossypii:542 C.japonica:262

Q753C2              	100.00%		H2VWG4              	100.00%
Bootstrap support for Q753C2 as seed ortholog is 100%.
Bootstrap support for H2VWG4 as seed ortholog is 100%.

Group of orthologs #103. Best score 542 bits
Score difference with first non-orthologous sequence - A.gossypii:542 C.japonica:542

Q74ZJ9              	100.00%		H2WBK6              	100.00%
Bootstrap support for Q74ZJ9 as seed ortholog is 100%.
Bootstrap support for H2WBK6 as seed ortholog is 100%.

Group of orthologs #104. Best score 537 bits
Score difference with first non-orthologous sequence - A.gossypii:537 C.japonica:537

Q757N2              	100.00%		H2VSB4              	100.00%
Bootstrap support for Q757N2 as seed ortholog is 100%.
Bootstrap support for H2VSB4 as seed ortholog is 100%.

Group of orthologs #105. Best score 536 bits
Score difference with first non-orthologous sequence - A.gossypii:536 C.japonica:381

Q75EA4              	100.00%		K7GW36              	100.00%
                    	       		H2VRJ4              	26.21%
Bootstrap support for Q75EA4 as seed ortholog is 100%.
Bootstrap support for K7GW36 as seed ortholog is 100%.

Group of orthologs #106. Best score 530 bits
Score difference with first non-orthologous sequence - A.gossypii:290 C.japonica:530

Q752H7              	100.00%		H2VN44              	100.00%
Bootstrap support for Q752H7 as seed ortholog is 100%.
Bootstrap support for H2VN44 as seed ortholog is 100%.

Group of orthologs #107. Best score 530 bits
Score difference with first non-orthologous sequence - A.gossypii:530 C.japonica:25

Q75AI2              	100.00%		H2VND3              	100.00%
Bootstrap support for Q75AI2 as seed ortholog is 100%.
Bootstrap support for H2VND3 as seed ortholog is 57%.
Alternative seed ortholog is H2VVB6 (25 bits away from this cluster)

Group of orthologs #108. Best score 530 bits
Score difference with first non-orthologous sequence - A.gossypii:530 C.japonica:103

Q751N2              	100.00%		H2WLB3              	100.00%
Bootstrap support for Q751N2 as seed ortholog is 100%.
Bootstrap support for H2WLB3 as seed ortholog is 98%.

Group of orthologs #109. Best score 529 bits
Score difference with first non-orthologous sequence - A.gossypii:529 C.japonica:529

Q757F2              	100.00%		H2VHE1              	100.00%
Q75ET8              	18.67%		H2WLP4              	7.61%
Bootstrap support for Q757F2 as seed ortholog is 100%.
Bootstrap support for H2VHE1 as seed ortholog is 100%.

Group of orthologs #110. Best score 528 bits
Score difference with first non-orthologous sequence - A.gossypii:291 C.japonica:379

Q759L6              	100.00%		K7H2V1              	100.00%
Bootstrap support for Q759L6 as seed ortholog is 100%.
Bootstrap support for K7H2V1 as seed ortholog is 100%.

Group of orthologs #111. Best score 526 bits
Score difference with first non-orthologous sequence - A.gossypii:526 C.japonica:267

Q75F41              	100.00%		H2W2J4              	100.00%
Bootstrap support for Q75F41 as seed ortholog is 100%.
Bootstrap support for H2W2J4 as seed ortholog is 100%.

Group of orthologs #112. Best score 525 bits
Score difference with first non-orthologous sequence - A.gossypii:525 C.japonica:525

Q757N3              	100.00%		H2WGE2              	100.00%
Bootstrap support for Q757N3 as seed ortholog is 100%.
Bootstrap support for H2WGE2 as seed ortholog is 100%.

Group of orthologs #113. Best score 524 bits
Score difference with first non-orthologous sequence - A.gossypii:219 C.japonica:524

Q753F9              	100.00%		H2VHX7              	100.00%
Bootstrap support for Q753F9 as seed ortholog is 99%.
Bootstrap support for H2VHX7 as seed ortholog is 100%.

Group of orthologs #114. Best score 524 bits
Score difference with first non-orthologous sequence - A.gossypii:524 C.japonica:260

Q74ZC0              	100.00%		H2WMV9              	100.00%
Bootstrap support for Q74ZC0 as seed ortholog is 100%.
Bootstrap support for H2WMV9 as seed ortholog is 100%.

Group of orthologs #115. Best score 523 bits
Score difference with first non-orthologous sequence - A.gossypii:456 C.japonica:523

Q75AF7              	100.00%		K7H4U1              	100.00%
Bootstrap support for Q75AF7 as seed ortholog is 100%.
Bootstrap support for K7H4U1 as seed ortholog is 100%.

Group of orthologs #116. Best score 522 bits
Score difference with first non-orthologous sequence - A.gossypii:522 C.japonica:522

Q74ZE0              	100.00%		H2WF17              	100.00%
Bootstrap support for Q74ZE0 as seed ortholog is 100%.
Bootstrap support for H2WF17 as seed ortholog is 100%.

Group of orthologs #117. Best score 522 bits
Score difference with first non-orthologous sequence - A.gossypii:522 C.japonica:522

Q74ZK6              	100.00%		H2WN24              	100.00%
Bootstrap support for Q74ZK6 as seed ortholog is 100%.
Bootstrap support for H2WN24 as seed ortholog is 100%.

Group of orthologs #118. Best score 521 bits
Score difference with first non-orthologous sequence - A.gossypii:521 C.japonica:521

Q755X5              	100.00%		H2VX37              	100.00%
Bootstrap support for Q755X5 as seed ortholog is 100%.
Bootstrap support for H2VX37 as seed ortholog is 100%.

Group of orthologs #119. Best score 519 bits
Score difference with first non-orthologous sequence - A.gossypii:519 C.japonica:519

Q759U6              	100.00%		H2WL67              	100.00%
Q759Z6              	19.76%		H2W9T3              	20.32%
                    	       		K7H5B4              	16.18%
Bootstrap support for Q759U6 as seed ortholog is 100%.
Bootstrap support for H2WL67 as seed ortholog is 100%.

Group of orthologs #120. Best score 519 bits
Score difference with first non-orthologous sequence - A.gossypii:519 C.japonica:519

Q759R7              	100.00%		H2XB77              	100.00%
Bootstrap support for Q759R7 as seed ortholog is 100%.
Bootstrap support for H2XB77 as seed ortholog is 100%.

Group of orthologs #121. Best score 517 bits
Score difference with first non-orthologous sequence - A.gossypii:517 C.japonica:517

Q750R1              	100.00%		H2WAX7              	100.00%
Bootstrap support for Q750R1 as seed ortholog is 100%.
Bootstrap support for H2WAX7 as seed ortholog is 100%.

Group of orthologs #122. Best score 515 bits
Score difference with first non-orthologous sequence - A.gossypii:515 C.japonica:515

Q757Q0              	100.00%		H2VXR4              	100.00%
Bootstrap support for Q757Q0 as seed ortholog is 100%.
Bootstrap support for H2VXR4 as seed ortholog is 100%.

Group of orthologs #123. Best score 510 bits
Score difference with first non-orthologous sequence - A.gossypii:510 C.japonica:510

Q756A7              	100.00%		H2WAP1              	100.00%
Bootstrap support for Q756A7 as seed ortholog is 100%.
Bootstrap support for H2WAP1 as seed ortholog is 100%.

Group of orthologs #124. Best score 509 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.japonica:193

Q755N4              	100.00%		H2VKI9              	100.00%
Bootstrap support for Q755N4 as seed ortholog is 99%.
Bootstrap support for H2VKI9 as seed ortholog is 99%.

Group of orthologs #125. Best score 509 bits
Score difference with first non-orthologous sequence - A.gossypii:509 C.japonica:509

Q758T5              	100.00%		H2VMQ8              	100.00%
Bootstrap support for Q758T5 as seed ortholog is 100%.
Bootstrap support for H2VMQ8 as seed ortholog is 100%.

Group of orthologs #126. Best score 508 bits
Score difference with first non-orthologous sequence - A.gossypii:508 C.japonica:508

Q751Y3              	100.00%		H2WQL3              	100.00%
                    	       		H2WHD9              	37.66%
Bootstrap support for Q751Y3 as seed ortholog is 100%.
Bootstrap support for H2WQL3 as seed ortholog is 100%.

Group of orthologs #127. Best score 508 bits
Score difference with first non-orthologous sequence - A.gossypii:508 C.japonica:508

Q75AF0              	100.00%		K7GYA7              	100.00%
Bootstrap support for Q75AF0 as seed ortholog is 100%.
Bootstrap support for K7GYA7 as seed ortholog is 100%.

Group of orthologs #128. Best score 507 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.japonica:507

Q75ES5              	100.00%		H2VL02              	100.00%
Bootstrap support for Q75ES5 as seed ortholog is 99%.
Bootstrap support for H2VL02 as seed ortholog is 100%.

Group of orthologs #129. Best score 505 bits
Score difference with first non-orthologous sequence - A.gossypii:247 C.japonica:174

Q75B50              	100.00%		H2VQ92              	100.00%
                    	       		K7GZ01              	9.54%
Bootstrap support for Q75B50 as seed ortholog is 100%.
Bootstrap support for H2VQ92 as seed ortholog is 99%.

Group of orthologs #130. Best score 505 bits
Score difference with first non-orthologous sequence - A.gossypii:505 C.japonica:505

Q750H4              	100.00%		H2W9C3              	100.00%
Bootstrap support for Q750H4 as seed ortholog is 100%.
Bootstrap support for H2W9C3 as seed ortholog is 100%.

Group of orthologs #131. Best score 502 bits
Score difference with first non-orthologous sequence - A.gossypii:502 C.japonica:502

O60028              	100.00%		H2VNV3              	100.00%
Bootstrap support for O60028 as seed ortholog is 100%.
Bootstrap support for H2VNV3 as seed ortholog is 100%.

Group of orthologs #132. Best score 499 bits
Score difference with first non-orthologous sequence - A.gossypii:242 C.japonica:499

Q74ZC3              	100.00%		K7GYJ5              	100.00%
Bootstrap support for Q74ZC3 as seed ortholog is 100%.
Bootstrap support for K7GYJ5 as seed ortholog is 100%.

Group of orthologs #133. Best score 498 bits
Score difference with first non-orthologous sequence - A.gossypii:16 C.japonica:320

Q755W0              	100.00%		H2W3Q1              	100.00%
                    	       		H2VXK5              	90.66%
Bootstrap support for Q755W0 as seed ortholog is 69%.
Alternative seed ortholog is Q75BL8 (16 bits away from this cluster)
Bootstrap support for H2W3Q1 as seed ortholog is 100%.

Group of orthologs #134. Best score 497 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.japonica:98

Q75CG3              	100.00%		H2WL47              	100.00%
Q758W1              	27.59%		
Bootstrap support for Q75CG3 as seed ortholog is 99%.
Bootstrap support for H2WL47 as seed ortholog is 99%.

Group of orthologs #135. Best score 497 bits
Score difference with first non-orthologous sequence - A.gossypii:497 C.japonica:497

Q759B4              	100.00%		K7GX60              	100.00%
Bootstrap support for Q759B4 as seed ortholog is 100%.
Bootstrap support for K7GX60 as seed ortholog is 100%.

Group of orthologs #136. Best score 496 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.japonica:152

Q75A21              	100.00%		H2VKQ9              	100.00%
Bootstrap support for Q75A21 as seed ortholog is 99%.
Bootstrap support for H2VKQ9 as seed ortholog is 100%.

Group of orthologs #137. Best score 493 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.japonica:493

Q75DQ8              	100.00%		H2VJJ6              	100.00%
Q75EQ4              	19.34%		H2XF24              	100.00%
Bootstrap support for Q75DQ8 as seed ortholog is 99%.
Bootstrap support for H2VJJ6 as seed ortholog is 100%.
Bootstrap support for H2XF24 as seed ortholog is 100%.

Group of orthologs #138. Best score 492 bits
Score difference with first non-orthologous sequence - A.gossypii:372 C.japonica:347

Q753Y9              	100.00%		H2WQ30              	100.00%
Bootstrap support for Q753Y9 as seed ortholog is 100%.
Bootstrap support for H2WQ30 as seed ortholog is 100%.

Group of orthologs #139. Best score 484 bits
Score difference with first non-orthologous sequence - A.gossypii:484 C.japonica:484

Q75F16              	100.00%		K7HD78              	100.00%
Bootstrap support for Q75F16 as seed ortholog is 100%.
Bootstrap support for K7HD78 as seed ortholog is 100%.

Group of orthologs #140. Best score 483 bits
Score difference with first non-orthologous sequence - A.gossypii:483 C.japonica:483

Q75BK3              	100.00%		H2VMA0              	100.00%
Bootstrap support for Q75BK3 as seed ortholog is 100%.
Bootstrap support for H2VMA0 as seed ortholog is 100%.

Group of orthologs #141. Best score 483 bits
Score difference with first non-orthologous sequence - A.gossypii:483 C.japonica:483

Q758Z0              	100.00%		H2W677              	100.00%
Bootstrap support for Q758Z0 as seed ortholog is 100%.
Bootstrap support for H2W677 as seed ortholog is 100%.

Group of orthologs #142. Best score 481 bits
Score difference with first non-orthologous sequence - A.gossypii:481 C.japonica:481

Q753L7              	100.00%		H2WBC0              	100.00%
Bootstrap support for Q753L7 as seed ortholog is 100%.
Bootstrap support for H2WBC0 as seed ortholog is 100%.

Group of orthologs #143. Best score 480 bits
Score difference with first non-orthologous sequence - A.gossypii:480 C.japonica:480

Q75DA4              	100.00%		H2VSU8              	100.00%
Bootstrap support for Q75DA4 as seed ortholog is 100%.
Bootstrap support for H2VSU8 as seed ortholog is 100%.

Group of orthologs #144. Best score 477 bits
Score difference with first non-orthologous sequence - A.gossypii:477 C.japonica:192

Q751A1              	100.00%		H2VPE1              	100.00%
Bootstrap support for Q751A1 as seed ortholog is 100%.
Bootstrap support for H2VPE1 as seed ortholog is 99%.

Group of orthologs #145. Best score 476 bits
Score difference with first non-orthologous sequence - A.gossypii:476 C.japonica:476

Q752D6              	100.00%		H2XHJ5              	100.00%
Bootstrap support for Q752D6 as seed ortholog is 100%.
Bootstrap support for H2XHJ5 as seed ortholog is 100%.

Group of orthologs #146. Best score 475 bits
Score difference with first non-orthologous sequence - A.gossypii:475 C.japonica:475

Q756R6              	100.00%		H2W365              	100.00%
Bootstrap support for Q756R6 as seed ortholog is 100%.
Bootstrap support for H2W365 as seed ortholog is 100%.

Group of orthologs #147. Best score 471 bits
Score difference with first non-orthologous sequence - A.gossypii:471 C.japonica:471

Q759A9              	100.00%		H2WP86              	100.00%
                    	       		H2WFI4              	31.16%
Bootstrap support for Q759A9 as seed ortholog is 100%.
Bootstrap support for H2WP86 as seed ortholog is 100%.

Group of orthologs #148. Best score 471 bits
Score difference with first non-orthologous sequence - A.gossypii:471 C.japonica:471

Q752T2              	100.00%		K7IHF4              	100.00%
Bootstrap support for Q752T2 as seed ortholog is 100%.
Bootstrap support for K7IHF4 as seed ortholog is 100%.

Group of orthologs #149. Best score 470 bits
Score difference with first non-orthologous sequence - A.gossypii:228 C.japonica:191

Q75AD4              	100.00%		H2WI70              	100.00%
                    	       		H2VMT7              	43.41%
Bootstrap support for Q75AD4 as seed ortholog is 100%.
Bootstrap support for H2WI70 as seed ortholog is 100%.

Group of orthologs #150. Best score 470 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.japonica:369

Q75C71              	100.00%		H2WD08              	100.00%
Bootstrap support for Q75C71 as seed ortholog is 100%.
Bootstrap support for H2WD08 as seed ortholog is 100%.

Group of orthologs #151. Best score 469 bits
Score difference with first non-orthologous sequence - A.gossypii:469 C.japonica:469

Q758N1              	100.00%		H2W410              	100.00%
Bootstrap support for Q758N1 as seed ortholog is 100%.
Bootstrap support for H2W410 as seed ortholog is 100%.

Group of orthologs #152. Best score 469 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.japonica:199

Q759G0              	100.00%		H2W7I1              	100.00%
Bootstrap support for Q759G0 as seed ortholog is 99%.
Bootstrap support for H2W7I1 as seed ortholog is 100%.

Group of orthologs #153. Best score 468 bits
Score difference with first non-orthologous sequence - A.gossypii:468 C.japonica:468

Q758E3              	100.00%		K7H926              	100.00%
Q757E6              	5.70%		
Bootstrap support for Q758E3 as seed ortholog is 100%.
Bootstrap support for K7H926 as seed ortholog is 100%.

Group of orthologs #154. Best score 467 bits
Score difference with first non-orthologous sequence - A.gossypii:388 C.japonica:467

Q758M7              	100.00%		H2VUR1              	100.00%
Bootstrap support for Q758M7 as seed ortholog is 100%.
Bootstrap support for H2VUR1 as seed ortholog is 100%.

Group of orthologs #155. Best score 466 bits
Score difference with first non-orthologous sequence - A.gossypii:408 C.japonica:466

Q75CR7              	100.00%		K7H6T4              	100.00%
                    	       		K7HK16              	34.37%
                    	       		K7IFN3              	34.06%
Bootstrap support for Q75CR7 as seed ortholog is 100%.
Bootstrap support for K7H6T4 as seed ortholog is 100%.

Group of orthologs #156. Best score 465 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:465

Q75BI5              	100.00%		H2WRE7              	100.00%
Bootstrap support for Q75BI5 as seed ortholog is 98%.
Bootstrap support for H2WRE7 as seed ortholog is 100%.

Group of orthologs #157. Best score 462 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.japonica:218

Q750T4              	100.00%		H2WAA1              	100.00%
Bootstrap support for Q750T4 as seed ortholog is 100%.
Bootstrap support for H2WAA1 as seed ortholog is 100%.

Group of orthologs #158. Best score 462 bits
Score difference with first non-orthologous sequence - A.gossypii:462 C.japonica:195

Q753K9              	100.00%		H2WKV6              	100.00%
Bootstrap support for Q753K9 as seed ortholog is 100%.
Bootstrap support for H2WKV6 as seed ortholog is 99%.

Group of orthologs #159. Best score 460 bits
Score difference with first non-orthologous sequence - A.gossypii:460 C.japonica:460

Q75BQ2              	100.00%		H2VHN9              	100.00%
Bootstrap support for Q75BQ2 as seed ortholog is 100%.
Bootstrap support for H2VHN9 as seed ortholog is 100%.

Group of orthologs #160. Best score 459 bits
Score difference with first non-orthologous sequence - A.gossypii:419 C.japonica:459

Q753S4              	100.00%		H2WJC1              	100.00%
Bootstrap support for Q753S4 as seed ortholog is 100%.
Bootstrap support for H2WJC1 as seed ortholog is 100%.

Group of orthologs #161. Best score 457 bits
Score difference with first non-orthologous sequence - A.gossypii:457 C.japonica:457

Q753V9              	100.00%		K7H093              	100.00%
Bootstrap support for Q753V9 as seed ortholog is 100%.
Bootstrap support for K7H093 as seed ortholog is 100%.

Group of orthologs #162. Best score 456 bits
Score difference with first non-orthologous sequence - A.gossypii:456 C.japonica:456

Q756Z0              	100.00%		H2WBI2              	100.00%
                    	       		K7H5Q4              	11.77%
Bootstrap support for Q756Z0 as seed ortholog is 100%.
Bootstrap support for H2WBI2 as seed ortholog is 100%.

Group of orthologs #163. Best score 456 bits
Score difference with first non-orthologous sequence - A.gossypii:456 C.japonica:456

Q751G2              	100.00%		H2WK08              	100.00%
                    	       		H2VXQ2              	63.41%
Bootstrap support for Q751G2 as seed ortholog is 100%.
Bootstrap support for H2WK08 as seed ortholog is 100%.

Group of orthologs #164. Best score 453 bits
Score difference with first non-orthologous sequence - A.gossypii:453 C.japonica:453

Q754E1              	100.00%		K7H0F9              	100.00%
Bootstrap support for Q754E1 as seed ortholog is 100%.
Bootstrap support for K7H0F9 as seed ortholog is 100%.

Group of orthologs #165. Best score 453 bits
Score difference with first non-orthologous sequence - A.gossypii:453 C.japonica:453

Q75DB4              	100.00%		K7H9F7              	100.00%
Bootstrap support for Q75DB4 as seed ortholog is 100%.
Bootstrap support for K7H9F7 as seed ortholog is 100%.

Group of orthologs #166. Best score 452 bits
Score difference with first non-orthologous sequence - A.gossypii:452 C.japonica:264

Q751B3              	100.00%		H2WE23              	100.00%
Bootstrap support for Q751B3 as seed ortholog is 100%.
Bootstrap support for H2WE23 as seed ortholog is 100%.

Group of orthologs #167. Best score 451 bits
Score difference with first non-orthologous sequence - A.gossypii:451 C.japonica:167

Q754U6              	100.00%		H2VTF1              	100.00%
Bootstrap support for Q754U6 as seed ortholog is 100%.
Bootstrap support for H2VTF1 as seed ortholog is 99%.

Group of orthologs #168. Best score 450 bits
Score difference with first non-orthologous sequence - A.gossypii:450 C.japonica:450

Q751U1              	100.00%		H2XBV7              	100.00%
Bootstrap support for Q751U1 as seed ortholog is 100%.
Bootstrap support for H2XBV7 as seed ortholog is 100%.

Group of orthologs #169. Best score 449 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:68

Q75F55              	100.00%		H2VY21              	100.00%
Bootstrap support for Q75F55 as seed ortholog is 93%.
Bootstrap support for H2VY21 as seed ortholog is 87%.

Group of orthologs #170. Best score 449 bits
Score difference with first non-orthologous sequence - A.gossypii:449 C.japonica:170

Q757P3              	100.00%		H2WCP2              	100.00%
Bootstrap support for Q757P3 as seed ortholog is 100%.
Bootstrap support for H2WCP2 as seed ortholog is 99%.

Group of orthologs #171. Best score 448 bits
Score difference with first non-orthologous sequence - A.gossypii:448 C.japonica:448

Q75BT9              	100.00%		H2WKI2              	100.00%
                    	       		H2WJQ8              	15.25%
                    	       		H2VKG7              	6.20%
Bootstrap support for Q75BT9 as seed ortholog is 100%.
Bootstrap support for H2WKI2 as seed ortholog is 100%.

Group of orthologs #172. Best score 448 bits
Score difference with first non-orthologous sequence - A.gossypii:448 C.japonica:448

Q753X7              	100.00%		H2W694              	100.00%
Bootstrap support for Q753X7 as seed ortholog is 100%.
Bootstrap support for H2W694 as seed ortholog is 100%.

Group of orthologs #173. Best score 448 bits
Score difference with first non-orthologous sequence - A.gossypii:448 C.japonica:448

Q75EN8              	100.00%		H2WDG3              	100.00%
Bootstrap support for Q75EN8 as seed ortholog is 100%.
Bootstrap support for H2WDG3 as seed ortholog is 100%.

Group of orthologs #174. Best score 448 bits
Score difference with first non-orthologous sequence - A.gossypii:448 C.japonica:448

Q75CB7              	100.00%		H2WPH2              	100.00%
Bootstrap support for Q75CB7 as seed ortholog is 100%.
Bootstrap support for H2WPH2 as seed ortholog is 100%.

Group of orthologs #175. Best score 446 bits
Score difference with first non-orthologous sequence - A.gossypii:446 C.japonica:446

Q75B31              	100.00%		H2VRT4              	100.00%
Bootstrap support for Q75B31 as seed ortholog is 100%.
Bootstrap support for H2VRT4 as seed ortholog is 100%.

Group of orthologs #176. Best score 446 bits
Score difference with first non-orthologous sequence - A.gossypii:356 C.japonica:365

Q756W4              	100.00%		H2W867              	100.00%
Bootstrap support for Q756W4 as seed ortholog is 100%.
Bootstrap support for H2W867 as seed ortholog is 100%.

Group of orthologs #177. Best score 444 bits
Score difference with first non-orthologous sequence - A.gossypii:397 C.japonica:306

Q74ZS6              	100.00%		H2WJU8              	100.00%
                    	       		H2WMM2              	32.94%
Bootstrap support for Q74ZS6 as seed ortholog is 100%.
Bootstrap support for H2WJU8 as seed ortholog is 100%.

Group of orthologs #178. Best score 444 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.japonica:185

Q754N7              	100.00%		H2VY06              	100.00%
Bootstrap support for Q754N7 as seed ortholog is 99%.
Bootstrap support for H2VY06 as seed ortholog is 99%.

Group of orthologs #179. Best score 443 bits
Score difference with first non-orthologous sequence - A.gossypii:325 C.japonica:443

Q74ZS1              	100.00%		H2VMI9              	100.00%
                    	       		K7GUG0              	5.19%
Bootstrap support for Q74ZS1 as seed ortholog is 100%.
Bootstrap support for H2VMI9 as seed ortholog is 100%.

Group of orthologs #180. Best score 440 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.japonica:36

Q758Q4              	100.00%		H2WL72              	100.00%
Bootstrap support for Q758Q4 as seed ortholog is 99%.
Bootstrap support for H2WL72 as seed ortholog is 76%.

Group of orthologs #181. Best score 439 bits
Score difference with first non-orthologous sequence - A.gossypii:439 C.japonica:439

Q75CR3              	100.00%		H2WHK9              	100.00%
Bootstrap support for Q75CR3 as seed ortholog is 100%.
Bootstrap support for H2WHK9 as seed ortholog is 100%.

Group of orthologs #182. Best score 429 bits
Score difference with first non-orthologous sequence - A.gossypii:429 C.japonica:429

Q753I4              	100.00%		H2WDL6              	100.00%
Bootstrap support for Q753I4 as seed ortholog is 100%.
Bootstrap support for H2WDL6 as seed ortholog is 100%.

Group of orthologs #183. Best score 428 bits
Score difference with first non-orthologous sequence - A.gossypii:428 C.japonica:428

Q74ZY9              	100.00%		H2VLK8              	100.00%
Bootstrap support for Q74ZY9 as seed ortholog is 100%.
Bootstrap support for H2VLK8 as seed ortholog is 100%.

Group of orthologs #184. Best score 428 bits
Score difference with first non-orthologous sequence - A.gossypii:428 C.japonica:134

Q74ZK4              	100.00%		H2WCV5              	100.00%
Bootstrap support for Q74ZK4 as seed ortholog is 100%.
Bootstrap support for H2WCV5 as seed ortholog is 99%.

Group of orthologs #185. Best score 427 bits
Score difference with first non-orthologous sequence - A.gossypii:427 C.japonica:427

Q756M5              	100.00%		K7H8S4              	100.00%
Bootstrap support for Q756M5 as seed ortholog is 100%.
Bootstrap support for K7H8S4 as seed ortholog is 100%.

Group of orthologs #186. Best score 426 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.japonica:314

Q75EZ9              	100.00%		H2VL50              	100.00%
Bootstrap support for Q75EZ9 as seed ortholog is 100%.
Bootstrap support for H2VL50 as seed ortholog is 100%.

Group of orthologs #187. Best score 426 bits
Score difference with first non-orthologous sequence - A.gossypii:426 C.japonica:426

Q75A67              	100.00%		H2WGI6              	100.00%
Bootstrap support for Q75A67 as seed ortholog is 100%.
Bootstrap support for H2WGI6 as seed ortholog is 100%.

Group of orthologs #188. Best score 425 bits
Score difference with first non-orthologous sequence - A.gossypii:425 C.japonica:425

Q75EB0              	100.00%		H2VZF2              	100.00%
Bootstrap support for Q75EB0 as seed ortholog is 100%.
Bootstrap support for H2VZF2 as seed ortholog is 100%.

Group of orthologs #189. Best score 423 bits
Score difference with first non-orthologous sequence - A.gossypii:423 C.japonica:423

Q75BT4              	100.00%		H2VV32              	100.00%
Bootstrap support for Q75BT4 as seed ortholog is 100%.
Bootstrap support for H2VV32 as seed ortholog is 100%.

Group of orthologs #190. Best score 423 bits
Score difference with first non-orthologous sequence - A.gossypii:423 C.japonica:423

Q75E56              	100.00%		K7HVX8              	100.00%
Bootstrap support for Q75E56 as seed ortholog is 100%.
Bootstrap support for K7HVX8 as seed ortholog is 100%.

Group of orthologs #191. Best score 421 bits
Score difference with first non-orthologous sequence - A.gossypii:357 C.japonica:119

Q74ZV2              	100.00%		K7H680              	100.00%
Bootstrap support for Q74ZV2 as seed ortholog is 100%.
Bootstrap support for K7H680 as seed ortholog is 99%.

Group of orthologs #192. Best score 420 bits
Score difference with first non-orthologous sequence - A.gossypii:420 C.japonica:420

Q75F62              	100.00%		H2W2F3              	100.00%
Bootstrap support for Q75F62 as seed ortholog is 100%.
Bootstrap support for H2W2F3 as seed ortholog is 100%.

Group of orthologs #193. Best score 420 bits
Score difference with first non-orthologous sequence - A.gossypii:420 C.japonica:420

Q756G7              	100.00%		H2WFP3              	100.00%
Bootstrap support for Q756G7 as seed ortholog is 100%.
Bootstrap support for H2WFP3 as seed ortholog is 100%.

Group of orthologs #194. Best score 419 bits
Score difference with first non-orthologous sequence - A.gossypii:419 C.japonica:419

Q75F64              	100.00%		H2W081              	100.00%
Bootstrap support for Q75F64 as seed ortholog is 100%.
Bootstrap support for H2W081 as seed ortholog is 100%.

Group of orthologs #195. Best score 417 bits
Score difference with first non-orthologous sequence - A.gossypii:417 C.japonica:417

Q750X3              	100.00%		K7GX47              	100.00%
Bootstrap support for Q750X3 as seed ortholog is 100%.
Bootstrap support for K7GX47 as seed ortholog is 100%.

Group of orthologs #196. Best score 416 bits
Score difference with first non-orthologous sequence - A.gossypii:416 C.japonica:127

Q75C66              	100.00%		K7HML3              	100.00%
Bootstrap support for Q75C66 as seed ortholog is 100%.
Bootstrap support for K7HML3 as seed ortholog is 99%.

Group of orthologs #197. Best score 414 bits
Score difference with first non-orthologous sequence - A.gossypii:414 C.japonica:298

Q75ED8              	100.00%		H2WMW3              	100.00%
Bootstrap support for Q75ED8 as seed ortholog is 100%.
Bootstrap support for H2WMW3 as seed ortholog is 100%.

Group of orthologs #198. Best score 413 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.japonica:144

Q757W8              	100.00%		H2W661              	100.00%
Bootstrap support for Q757W8 as seed ortholog is 99%.
Bootstrap support for H2W661 as seed ortholog is 99%.

Group of orthologs #199. Best score 413 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.japonica:280

Q74ZG2              	100.00%		K7GVL3              	100.00%
Bootstrap support for Q74ZG2 as seed ortholog is 100%.
Bootstrap support for K7GVL3 as seed ortholog is 100%.

Group of orthologs #200. Best score 413 bits
Score difference with first non-orthologous sequence - A.gossypii:413 C.japonica:413

Q753P8              	100.00%		K7I6I5              	100.00%
Bootstrap support for Q753P8 as seed ortholog is 100%.
Bootstrap support for K7I6I5 as seed ortholog is 100%.

Group of orthologs #201. Best score 411 bits
Score difference with first non-orthologous sequence - A.gossypii:268 C.japonica:411

Q755U7              	100.00%		H2VHR2              	100.00%
Bootstrap support for Q755U7 as seed ortholog is 100%.
Bootstrap support for H2VHR2 as seed ortholog is 100%.

Group of orthologs #202. Best score 411 bits
Score difference with first non-orthologous sequence - A.gossypii:239 C.japonica:285

Q757U8              	100.00%		H2WAL7              	100.00%
Bootstrap support for Q757U8 as seed ortholog is 100%.
Bootstrap support for H2WAL7 as seed ortholog is 100%.

Group of orthologs #203. Best score 410 bits
Score difference with first non-orthologous sequence - A.gossypii:410 C.japonica:205

Q755P1              	100.00%		H2WAY9              	100.00%
Bootstrap support for Q755P1 as seed ortholog is 100%.
Bootstrap support for H2WAY9 as seed ortholog is 99%.

Group of orthologs #204. Best score 410 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:7

Q755B6              	100.00%		K7H8J9              	100.00%
Bootstrap support for Q755B6 as seed ortholog is 99%.
Bootstrap support for K7H8J9 as seed ortholog is 56%.
Alternative seed ortholog is K7H5V7 (7 bits away from this cluster)

Group of orthologs #205. Best score 409 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.japonica:260

Q75BT0              	100.00%		H2WNL8              	100.00%
                    	       		K7HUN2              	26.65%
                    	       		H2WGE0              	20.74%
Bootstrap support for Q75BT0 as seed ortholog is 100%.
Bootstrap support for H2WNL8 as seed ortholog is 100%.

Group of orthologs #206. Best score 409 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.japonica:196

Q75EW9              	100.00%		H2WLG9              	100.00%
Bootstrap support for Q75EW9 as seed ortholog is 100%.
Bootstrap support for H2WLG9 as seed ortholog is 100%.

Group of orthologs #207. Best score 409 bits
Score difference with first non-orthologous sequence - A.gossypii:287 C.japonica:328

Q75CD0              	100.00%		K7H0K1              	100.00%
Bootstrap support for Q75CD0 as seed ortholog is 100%.
Bootstrap support for K7H0K1 as seed ortholog is 100%.

Group of orthologs #208. Best score 407 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:64

Q75DK7              	100.00%		H2X993              	100.00%
Bootstrap support for Q75DK7 as seed ortholog is 99%.
Bootstrap support for H2X993 as seed ortholog is 92%.

Group of orthologs #209. Best score 406 bits
Score difference with first non-orthologous sequence - A.gossypii:406 C.japonica:406

Q75CF3              	100.00%		K7H013              	100.00%
Bootstrap support for Q75CF3 as seed ortholog is 100%.
Bootstrap support for K7H013 as seed ortholog is 100%.

Group of orthologs #210. Best score 405 bits
Score difference with first non-orthologous sequence - A.gossypii:328 C.japonica:405

Q75AZ9              	100.00%		H2VLM4              	100.00%
Bootstrap support for Q75AZ9 as seed ortholog is 100%.
Bootstrap support for H2VLM4 as seed ortholog is 100%.

Group of orthologs #211. Best score 404 bits
Score difference with first non-orthologous sequence - A.gossypii:404 C.japonica:404

Q75C45              	100.00%		H2W5T3              	100.00%
Bootstrap support for Q75C45 as seed ortholog is 100%.
Bootstrap support for H2W5T3 as seed ortholog is 100%.

Group of orthologs #212. Best score 401 bits
Score difference with first non-orthologous sequence - A.gossypii:15 C.japonica:206

Q75AM5              	100.00%		H2WD31              	100.00%
Bootstrap support for Q75AM5 as seed ortholog is 34%.
Alternative seed ortholog is Q759R9 (15 bits away from this cluster)
Bootstrap support for H2WD31 as seed ortholog is 100%.

Group of orthologs #213. Best score 397 bits
Score difference with first non-orthologous sequence - A.gossypii:271 C.japonica:187

Q752Y9              	100.00%		H2WE29              	100.00%
                    	       		K7IK70              	29.41%
                    	       		K7IKV1              	29.22%
                    	       		H2VQ78              	23.66%
                    	       		H2VW53              	23.42%
                    	       		H2VTJ9              	20.94%
                    	       		H2XFP9              	20.51%
                    	       		K7H4U8              	18.56%
                    	       		H2VQ83              	18.47%
                    	       		K7HDW0              	18.04%
                    	       		H2VSY0              	14.99%
                    	       		H2W775              	11.42%
Bootstrap support for Q752Y9 as seed ortholog is 100%.
Bootstrap support for H2WE29 as seed ortholog is 99%.

Group of orthologs #214. Best score 397 bits
Score difference with first non-orthologous sequence - A.gossypii:397 C.japonica:355

Q75DS8              	100.00%		H2VL94              	100.00%
Bootstrap support for Q75DS8 as seed ortholog is 100%.
Bootstrap support for H2VL94 as seed ortholog is 100%.

Group of orthologs #215. Best score 397 bits
Score difference with first non-orthologous sequence - A.gossypii:339 C.japonica:115

Q75E20              	100.00%		H2W1H4              	100.00%
Bootstrap support for Q75E20 as seed ortholog is 100%.
Bootstrap support for H2W1H4 as seed ortholog is 99%.

Group of orthologs #216. Best score 396 bits
Score difference with first non-orthologous sequence - A.gossypii:396 C.japonica:290

Q74ZX3              	100.00%		H2W317              	100.00%
Bootstrap support for Q74ZX3 as seed ortholog is 100%.
Bootstrap support for H2W317 as seed ortholog is 100%.

Group of orthologs #217. Best score 395 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.japonica:395

Q758F4              	100.00%		H2WQU2              	100.00%
Bootstrap support for Q758F4 as seed ortholog is 99%.
Bootstrap support for H2WQU2 as seed ortholog is 100%.

Group of orthologs #218. Best score 395 bits
Score difference with first non-orthologous sequence - A.gossypii:395 C.japonica:395

Q758R9              	100.00%		H2WRD4              	100.00%
Bootstrap support for Q758R9 as seed ortholog is 100%.
Bootstrap support for H2WRD4 as seed ortholog is 100%.

Group of orthologs #219. Best score 394 bits
Score difference with first non-orthologous sequence - A.gossypii:394 C.japonica:394

Q75EA7              	100.00%		H2W4Y4              	100.00%
                    	       		K7HSL3              	81.28%
Bootstrap support for Q75EA7 as seed ortholog is 100%.
Bootstrap support for H2W4Y4 as seed ortholog is 100%.

Group of orthologs #220. Best score 394 bits
Score difference with first non-orthologous sequence - A.gossypii:231 C.japonica:193

Q75B16              	100.00%		H2VWN1              	100.00%
Bootstrap support for Q75B16 as seed ortholog is 99%.
Bootstrap support for H2VWN1 as seed ortholog is 99%.

Group of orthologs #221. Best score 393 bits
Score difference with first non-orthologous sequence - A.gossypii:31 C.japonica:283

Q75C31              	100.00%		H2VPJ7              	100.00%
Bootstrap support for Q75C31 as seed ortholog is 62%.
Alternative seed ortholog is Q750J2 (31 bits away from this cluster)
Bootstrap support for H2VPJ7 as seed ortholog is 100%.

Group of orthologs #222. Best score 390 bits
Score difference with first non-orthologous sequence - A.gossypii:390 C.japonica:390

Q75CS4              	100.00%		H2W3W2              	100.00%
Bootstrap support for Q75CS4 as seed ortholog is 100%.
Bootstrap support for H2W3W2 as seed ortholog is 100%.

Group of orthologs #223. Best score 388 bits
Score difference with first non-orthologous sequence - A.gossypii:388 C.japonica:388

Q759A5              	100.00%		H2WCJ3              	100.00%
Bootstrap support for Q759A5 as seed ortholog is 100%.
Bootstrap support for H2WCJ3 as seed ortholog is 100%.

Group of orthologs #224. Best score 387 bits
Score difference with first non-orthologous sequence - A.gossypii:387 C.japonica:255

Q74ZU5              	100.00%		H2W723              	100.00%
Bootstrap support for Q74ZU5 as seed ortholog is 100%.
Bootstrap support for H2W723 as seed ortholog is 100%.

Group of orthologs #225. Best score 387 bits
Score difference with first non-orthologous sequence - A.gossypii:387 C.japonica:387

Q750Q5              	100.00%		K7GU16              	100.00%
Bootstrap support for Q750Q5 as seed ortholog is 100%.
Bootstrap support for K7GU16 as seed ortholog is 100%.

Group of orthologs #226. Best score 386 bits
Score difference with first non-orthologous sequence - A.gossypii:282 C.japonica:101

Q758J2              	100.00%		H2WGI3              	100.00%
                    	       		H2W1V2              	5.98%
Bootstrap support for Q758J2 as seed ortholog is 100%.
Bootstrap support for H2WGI3 as seed ortholog is 98%.

Group of orthologs #227. Best score 386 bits
Score difference with first non-orthologous sequence - A.gossypii:386 C.japonica:386

Q756G8              	100.00%		H2VGG9              	100.00%
Bootstrap support for Q756G8 as seed ortholog is 100%.
Bootstrap support for H2VGG9 as seed ortholog is 100%.

Group of orthologs #228. Best score 385 bits
Score difference with first non-orthologous sequence - A.gossypii:385 C.japonica:385

Q75AY3              	100.00%		K7GUL6              	100.00%
Bootstrap support for Q75AY3 as seed ortholog is 100%.
Bootstrap support for K7GUL6 as seed ortholog is 100%.

Group of orthologs #229. Best score 383 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:383

Q754Q9              	100.00%		H2W8W7              	100.00%
Bootstrap support for Q754Q9 as seed ortholog is 86%.
Bootstrap support for H2W8W7 as seed ortholog is 100%.

Group of orthologs #230. Best score 383 bits
Score difference with first non-orthologous sequence - A.gossypii:383 C.japonica:383

Q753S2              	100.00%		H2WCQ3              	100.00%
Bootstrap support for Q753S2 as seed ortholog is 100%.
Bootstrap support for H2WCQ3 as seed ortholog is 100%.

Group of orthologs #231. Best score 381 bits
Score difference with first non-orthologous sequence - A.gossypii:381 C.japonica:381

Q759A4              	100.00%		H2W3P0              	100.00%
Bootstrap support for Q759A4 as seed ortholog is 100%.
Bootstrap support for H2W3P0 as seed ortholog is 100%.

Group of orthologs #232. Best score 381 bits
Score difference with first non-orthologous sequence - A.gossypii:381 C.japonica:159

Q758H3              	100.00%		H2W6J4              	100.00%
Bootstrap support for Q758H3 as seed ortholog is 100%.
Bootstrap support for H2W6J4 as seed ortholog is 100%.

Group of orthologs #233. Best score 380 bits
Score difference with first non-orthologous sequence - A.gossypii:380 C.japonica:380

Q74ZH6              	100.00%		H2W805              	100.00%
Bootstrap support for Q74ZH6 as seed ortholog is 100%.
Bootstrap support for H2W805 as seed ortholog is 100%.

Group of orthologs #234. Best score 379 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.japonica:379

Q751A4              	100.00%		H2WDI6              	100.00%
Q74Z35              	10.53%		K7HES1              	8.57%
Bootstrap support for Q751A4 as seed ortholog is 95%.
Bootstrap support for H2WDI6 as seed ortholog is 100%.

Group of orthologs #235. Best score 379 bits
Score difference with first non-orthologous sequence - A.gossypii:379 C.japonica:298

Q751I9              	100.00%		H2W486              	100.00%
Bootstrap support for Q751I9 as seed ortholog is 100%.
Bootstrap support for H2W486 as seed ortholog is 100%.

Group of orthologs #236. Best score 379 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.japonica:379

Q752H0              	100.00%		H2W7K0              	100.00%
Bootstrap support for Q752H0 as seed ortholog is 99%.
Bootstrap support for H2W7K0 as seed ortholog is 100%.

Group of orthologs #237. Best score 378 bits
Score difference with first non-orthologous sequence - A.gossypii:218 C.japonica:242

Q756Z1              	100.00%		H2WK62              	100.00%
                    	       		K7HX13              	11.51%
Bootstrap support for Q756Z1 as seed ortholog is 100%.
Bootstrap support for H2WK62 as seed ortholog is 100%.

Group of orthologs #238. Best score 378 bits
Score difference with first non-orthologous sequence - A.gossypii:378 C.japonica:378

Q75D85              	100.00%		K7H2Z4              	100.00%
Bootstrap support for Q75D85 as seed ortholog is 100%.
Bootstrap support for K7H2Z4 as seed ortholog is 100%.

Group of orthologs #239. Best score 377 bits
Score difference with first non-orthologous sequence - A.gossypii:377 C.japonica:76

Q750E9              	100.00%		H2WHT7              	100.00%
Bootstrap support for Q750E9 as seed ortholog is 100%.
Bootstrap support for H2WHT7 as seed ortholog is 99%.

Group of orthologs #240. Best score 376 bits
Score difference with first non-orthologous sequence - A.gossypii:295 C.japonica:322

Q750K1              	100.00%		H2WAK8              	100.00%
Bootstrap support for Q750K1 as seed ortholog is 100%.
Bootstrap support for H2WAK8 as seed ortholog is 100%.

Group of orthologs #241. Best score 372 bits
Score difference with first non-orthologous sequence - A.gossypii:317 C.japonica:372

Q75BY3              	100.00%		H2W7R8              	100.00%
Bootstrap support for Q75BY3 as seed ortholog is 100%.
Bootstrap support for H2W7R8 as seed ortholog is 100%.

Group of orthologs #242. Best score 371 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:81

Q757K5              	100.00%		H2WDS3              	100.00%
Bootstrap support for Q757K5 as seed ortholog is 99%.
Bootstrap support for H2WDS3 as seed ortholog is 97%.

Group of orthologs #243. Best score 370 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.japonica:370

Q754S8              	100.00%		H2VGB4              	100.00%
Bootstrap support for Q754S8 as seed ortholog is 100%.
Bootstrap support for H2VGB4 as seed ortholog is 100%.

Group of orthologs #244. Best score 369 bits
Score difference with first non-orthologous sequence - A.gossypii:369 C.japonica:369

Q755A1              	100.00%		H2WD44              	100.00%
Bootstrap support for Q755A1 as seed ortholog is 100%.
Bootstrap support for H2WD44 as seed ortholog is 100%.

Group of orthologs #245. Best score 369 bits
Score difference with first non-orthologous sequence - A.gossypii:235 C.japonica:113

Q75AG7              	100.00%		K7H786              	100.00%
Bootstrap support for Q75AG7 as seed ortholog is 100%.
Bootstrap support for K7H786 as seed ortholog is 97%.

Group of orthologs #246. Best score 368 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.japonica:67

Q74ZA9              	100.00%		H2W6I1              	100.00%
Bootstrap support for Q74ZA9 as seed ortholog is 100%.
Bootstrap support for H2W6I1 as seed ortholog is 99%.

Group of orthologs #247. Best score 367 bits
Score difference with first non-orthologous sequence - A.gossypii:367 C.japonica:367

Q75DW1              	100.00%		H2VP67              	100.00%
Bootstrap support for Q75DW1 as seed ortholog is 100%.
Bootstrap support for H2VP67 as seed ortholog is 100%.

Group of orthologs #248. Best score 366 bits
Score difference with first non-orthologous sequence - A.gossypii:366 C.japonica:233

Q751B0              	100.00%		H2W7P3              	100.00%
Bootstrap support for Q751B0 as seed ortholog is 100%.
Bootstrap support for H2W7P3 as seed ortholog is 100%.

Group of orthologs #249. Best score 365 bits
Score difference with first non-orthologous sequence - A.gossypii:286 C.japonica:365

Q75AP7              	100.00%		H2WHF6              	100.00%
Bootstrap support for Q75AP7 as seed ortholog is 100%.
Bootstrap support for H2WHF6 as seed ortholog is 100%.

Group of orthologs #250. Best score 364 bits
Score difference with first non-orthologous sequence - A.gossypii:364 C.japonica:364

Q75A16              	100.00%		H2W9H6              	100.00%
Bootstrap support for Q75A16 as seed ortholog is 100%.
Bootstrap support for H2W9H6 as seed ortholog is 100%.

Group of orthologs #251. Best score 364 bits
Score difference with first non-orthologous sequence - A.gossypii:364 C.japonica:145

Q75BY2              	100.00%		H2WH43              	100.00%
Bootstrap support for Q75BY2 as seed ortholog is 100%.
Bootstrap support for H2WH43 as seed ortholog is 99%.

Group of orthologs #252. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.japonica:131

Q754D3              	100.00%		H2VN53              	100.00%
Bootstrap support for Q754D3 as seed ortholog is 100%.
Bootstrap support for H2VN53 as seed ortholog is 99%.

Group of orthologs #253. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:363 C.japonica:363

Q75DM3              	100.00%		H2VJW5              	100.00%
Bootstrap support for Q75DM3 as seed ortholog is 100%.
Bootstrap support for H2VJW5 as seed ortholog is 100%.

Group of orthologs #254. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:363 C.japonica:180

Q756A3              	100.00%		H2WE11              	100.00%
Bootstrap support for Q756A3 as seed ortholog is 100%.
Bootstrap support for H2WE11 as seed ortholog is 99%.

Group of orthologs #255. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:363 C.japonica:363

Q75A83              	100.00%		H2WK35              	100.00%
Bootstrap support for Q75A83 as seed ortholog is 100%.
Bootstrap support for H2WK35 as seed ortholog is 100%.

Group of orthologs #256. Best score 362 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.japonica:155

Q758U3              	100.00%		H2VM35              	100.00%
Bootstrap support for Q758U3 as seed ortholog is 99%.
Bootstrap support for H2VM35 as seed ortholog is 99%.

Group of orthologs #257. Best score 362 bits
Score difference with first non-orthologous sequence - A.gossypii:362 C.japonica:362

Q753Z3              	100.00%		H2W6N2              	100.00%
Bootstrap support for Q753Z3 as seed ortholog is 100%.
Bootstrap support for H2W6N2 as seed ortholog is 100%.

Group of orthologs #258. Best score 362 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:31

Q753W1              	100.00%		H2W9W6              	100.00%
Bootstrap support for Q753W1 as seed ortholog is 99%.
Bootstrap support for H2W9W6 as seed ortholog is 80%.

Group of orthologs #259. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:361 C.japonica:361

Q755G5              	100.00%		H2W4I6              	100.00%
Bootstrap support for Q755G5 as seed ortholog is 100%.
Bootstrap support for H2W4I6 as seed ortholog is 100%.

Group of orthologs #260. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:361 C.japonica:361

Q75DC5              	100.00%		H2W487              	100.00%
Bootstrap support for Q75DC5 as seed ortholog is 100%.
Bootstrap support for H2W487 as seed ortholog is 100%.

Group of orthologs #261. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:361 C.japonica:230

Q752H4              	100.00%		K7GWI1              	100.00%
Bootstrap support for Q752H4 as seed ortholog is 100%.
Bootstrap support for K7GWI1 as seed ortholog is 100%.

Group of orthologs #262. Best score 360 bits
Score difference with first non-orthologous sequence - A.gossypii:360 C.japonica:360

Q75CW2              	100.00%		H2WKA2              	100.00%
Bootstrap support for Q75CW2 as seed ortholog is 100%.
Bootstrap support for H2WKA2 as seed ortholog is 100%.

Group of orthologs #263. Best score 359 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:210

Q759M3              	100.00%		H2W8H5              	100.00%
                    	       		H2VMV0              	33.42%
Bootstrap support for Q759M3 as seed ortholog is 99%.
Bootstrap support for H2W8H5 as seed ortholog is 100%.

Group of orthologs #264. Best score 359 bits
Score difference with first non-orthologous sequence - A.gossypii:359 C.japonica:359

Q752V5              	100.00%		H2VU71              	100.00%
Bootstrap support for Q752V5 as seed ortholog is 100%.
Bootstrap support for H2VU71 as seed ortholog is 100%.

Group of orthologs #265. Best score 359 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:39

Q75A61              	100.00%		H2WFM3              	100.00%
Bootstrap support for Q75A61 as seed ortholog is 98%.
Bootstrap support for H2WFM3 as seed ortholog is 89%.

Group of orthologs #266. Best score 358 bits
Score difference with first non-orthologous sequence - A.gossypii:358 C.japonica:358

Q75F36              	100.00%		H2VJ42              	100.00%
Bootstrap support for Q75F36 as seed ortholog is 100%.
Bootstrap support for H2VJ42 as seed ortholog is 100%.

Group of orthologs #267. Best score 356 bits
Score difference with first non-orthologous sequence - A.gossypii:356 C.japonica:356

Q750I3              	100.00%		H2W4Z4              	100.00%
Bootstrap support for Q750I3 as seed ortholog is 100%.
Bootstrap support for H2W4Z4 as seed ortholog is 100%.

Group of orthologs #268. Best score 355 bits
Score difference with first non-orthologous sequence - A.gossypii:355 C.japonica:355

Q75CF4              	100.00%		H2VKA8              	100.00%
Bootstrap support for Q75CF4 as seed ortholog is 100%.
Bootstrap support for H2VKA8 as seed ortholog is 100%.

Group of orthologs #269. Best score 354 bits
Score difference with first non-orthologous sequence - A.gossypii:168 C.japonica:97

Q759V7              	100.00%		H2W401              	100.00%
Bootstrap support for Q759V7 as seed ortholog is 99%.
Bootstrap support for H2W401 as seed ortholog is 99%.

Group of orthologs #270. Best score 353 bits
Score difference with first non-orthologous sequence - A.gossypii:353 C.japonica:353

Q75BJ2              	100.00%		K7H7Z4              	100.00%
Bootstrap support for Q75BJ2 as seed ortholog is 100%.
Bootstrap support for K7H7Z4 as seed ortholog is 100%.

Group of orthologs #271. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:352 C.japonica:88

Q8J1G4              	100.00%		H2VW10              	100.00%
Bootstrap support for Q8J1G4 as seed ortholog is 100%.
Bootstrap support for H2VW10 as seed ortholog is 97%.

Group of orthologs #272. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:352 C.japonica:128

Q758U9              	100.00%		H2WKQ9              	100.00%
Bootstrap support for Q758U9 as seed ortholog is 100%.
Bootstrap support for H2WKQ9 as seed ortholog is 99%.

Group of orthologs #273. Best score 352 bits
Score difference with first non-orthologous sequence - A.gossypii:352 C.japonica:352

Q75E89              	100.00%		H2WF81              	100.00%
Bootstrap support for Q75E89 as seed ortholog is 100%.
Bootstrap support for H2WF81 as seed ortholog is 100%.

Group of orthologs #274. Best score 351 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.japonica:155

Q750G3              	100.00%		H2VKM8              	100.00%
Bootstrap support for Q750G3 as seed ortholog is 99%.
Bootstrap support for H2VKM8 as seed ortholog is 98%.

Group of orthologs #275. Best score 351 bits
Score difference with first non-orthologous sequence - A.gossypii:351 C.japonica:351

Q75ED5              	100.00%		H2W7I5              	100.00%
Bootstrap support for Q75ED5 as seed ortholog is 100%.
Bootstrap support for H2W7I5 as seed ortholog is 100%.

Group of orthologs #276. Best score 351 bits
Score difference with first non-orthologous sequence - A.gossypii:351 C.japonica:351

Q75CI4              	100.00%		K7H1V6              	100.00%
Bootstrap support for Q75CI4 as seed ortholog is 100%.
Bootstrap support for K7H1V6 as seed ortholog is 100%.

Group of orthologs #277. Best score 349 bits
Score difference with first non-orthologous sequence - A.gossypii:349 C.japonica:349

Q75CB5              	100.00%		H2VN25              	100.00%
                    	       		H2VQA8              	78.88%
                    	       		H2VR20              	56.99%
Bootstrap support for Q75CB5 as seed ortholog is 100%.
Bootstrap support for H2VN25 as seed ortholog is 100%.

Group of orthologs #278. Best score 349 bits
Score difference with first non-orthologous sequence - A.gossypii:349 C.japonica:349

Q757E3              	100.00%		H2W1U9              	100.00%
Bootstrap support for Q757E3 as seed ortholog is 100%.
Bootstrap support for H2W1U9 as seed ortholog is 100%.

Group of orthologs #279. Best score 349 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.japonica:17

Q75B34              	100.00%		H2WCJ6              	100.00%
Bootstrap support for Q75B34 as seed ortholog is 99%.
Bootstrap support for H2WCJ6 as seed ortholog is 63%.
Alternative seed ortholog is H2W2T3 (17 bits away from this cluster)

Group of orthologs #280. Best score 347 bits
Score difference with first non-orthologous sequence - A.gossypii:347 C.japonica:347

Q75DL9              	100.00%		H2VQ99              	100.00%
Bootstrap support for Q75DL9 as seed ortholog is 100%.
Bootstrap support for H2VQ99 as seed ortholog is 100%.

Group of orthologs #281. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:219 C.japonica:346

Q751N9              	100.00%		H2WAX8              	100.00%
Bootstrap support for Q751N9 as seed ortholog is 99%.
Bootstrap support for H2WAX8 as seed ortholog is 100%.

Group of orthologs #282. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:346 C.japonica:346

Q759Q4              	100.00%		H2WFX4              	100.00%
Bootstrap support for Q759Q4 as seed ortholog is 100%.
Bootstrap support for H2WFX4 as seed ortholog is 100%.

Group of orthologs #283. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:346 C.japonica:346

Q757W9              	100.00%		H2WK38              	100.00%
Bootstrap support for Q757W9 as seed ortholog is 100%.
Bootstrap support for H2WK38 as seed ortholog is 100%.

Group of orthologs #284. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:346 C.japonica:346

Q75F61              	100.00%		H2X6B1              	100.00%
Bootstrap support for Q75F61 as seed ortholog is 100%.
Bootstrap support for H2X6B1 as seed ortholog is 100%.

Group of orthologs #285. Best score 344 bits
Score difference with first non-orthologous sequence - A.gossypii:344 C.japonica:344

Q75CV3              	100.00%		H2W4U6              	100.00%
Bootstrap support for Q75CV3 as seed ortholog is 100%.
Bootstrap support for H2W4U6 as seed ortholog is 100%.

Group of orthologs #286. Best score 343 bits
Score difference with first non-orthologous sequence - A.gossypii:343 C.japonica:343

Q751P6              	100.00%		H2WGL4              	100.00%
                    	       		K7IKX5              	51.75%
Bootstrap support for Q751P6 as seed ortholog is 100%.
Bootstrap support for H2WGL4 as seed ortholog is 100%.

Group of orthologs #287. Best score 343 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.japonica:74

Q750A9              	100.00%		K7H0P3              	100.00%
Bootstrap support for Q750A9 as seed ortholog is 88%.
Bootstrap support for K7H0P3 as seed ortholog is 98%.

Group of orthologs #288. Best score 342 bits
Score difference with first non-orthologous sequence - A.gossypii:342 C.japonica:342

Q75EP8              	100.00%		H2WA76              	100.00%
Bootstrap support for Q75EP8 as seed ortholog is 100%.
Bootstrap support for H2WA76 as seed ortholog is 100%.

Group of orthologs #289. Best score 341 bits
Score difference with first non-orthologous sequence - A.gossypii:270 C.japonica:341

Q75DQ0              	100.00%		H2W5K7              	100.00%
Q757I1              	42.58%		
Q75EJ5              	40.63%		
Bootstrap support for Q75DQ0 as seed ortholog is 100%.
Bootstrap support for H2W5K7 as seed ortholog is 100%.

Group of orthologs #290. Best score 341 bits
Score difference with first non-orthologous sequence - A.gossypii:341 C.japonica:341

Q75A13              	100.00%		H2W665              	100.00%
Bootstrap support for Q75A13 as seed ortholog is 100%.
Bootstrap support for H2W665 as seed ortholog is 100%.

Group of orthologs #291. Best score 340 bits
Score difference with first non-orthologous sequence - A.gossypii:340 C.japonica:340

Q75E73              	100.00%		H2VKV7              	100.00%
Bootstrap support for Q75E73 as seed ortholog is 100%.
Bootstrap support for H2VKV7 as seed ortholog is 100%.

Group of orthologs #292. Best score 340 bits
Score difference with first non-orthologous sequence - A.gossypii:340 C.japonica:163

Q75F49              	100.00%		H2W6I7              	100.00%
Bootstrap support for Q75F49 as seed ortholog is 100%.
Bootstrap support for H2W6I7 as seed ortholog is 99%.

Group of orthologs #293. Best score 340 bits
Score difference with first non-orthologous sequence - A.gossypii:340 C.japonica:340

Q75BG3              	100.00%		H2WD94              	100.00%
Bootstrap support for Q75BG3 as seed ortholog is 100%.
Bootstrap support for H2WD94 as seed ortholog is 100%.

Group of orthologs #294. Best score 339 bits
Score difference with first non-orthologous sequence - A.gossypii:339 C.japonica:339

Q75CG9              	100.00%		H2VI90              	100.00%
Bootstrap support for Q75CG9 as seed ortholog is 100%.
Bootstrap support for H2VI90 as seed ortholog is 100%.

Group of orthologs #295. Best score 336 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.japonica:84

Q754Q3              	100.00%		K7GZ49              	100.00%
Q75CV7              	12.72%		
Bootstrap support for Q754Q3 as seed ortholog is 74%.
Alternative seed ortholog is Q756M2 (24 bits away from this cluster)
Bootstrap support for K7GZ49 as seed ortholog is 99%.

Group of orthologs #296. Best score 333 bits
Score difference with first non-orthologous sequence - A.gossypii:333 C.japonica:333

Q752M1              	100.00%		H2W9F8              	100.00%
Bootstrap support for Q752M1 as seed ortholog is 100%.
Bootstrap support for H2W9F8 as seed ortholog is 100%.

Group of orthologs #297. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:258 C.japonica:331

Q755L3              	100.00%		H2VI74              	100.00%
Bootstrap support for Q755L3 as seed ortholog is 100%.
Bootstrap support for H2VI74 as seed ortholog is 100%.

Group of orthologs #298. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:331 C.japonica:331

Q754V9              	100.00%		H2VTJ6              	100.00%
Bootstrap support for Q754V9 as seed ortholog is 100%.
Bootstrap support for H2VTJ6 as seed ortholog is 100%.

Group of orthologs #299. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:331 C.japonica:331

Q75A55              	100.00%		H2W963              	100.00%
Bootstrap support for Q75A55 as seed ortholog is 100%.
Bootstrap support for H2W963 as seed ortholog is 100%.

Group of orthologs #300. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:331 C.japonica:331

Q75FB3              	100.00%		H2W6W1              	100.00%
Bootstrap support for Q75FB3 as seed ortholog is 100%.
Bootstrap support for H2W6W1 as seed ortholog is 100%.

Group of orthologs #301. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:331 C.japonica:331

Q75EI5              	100.00%		H2WGS7              	100.00%
Bootstrap support for Q75EI5 as seed ortholog is 100%.
Bootstrap support for H2WGS7 as seed ortholog is 100%.

Group of orthologs #302. Best score 329 bits
Score difference with first non-orthologous sequence - A.gossypii:254 C.japonica:253

Q753X3              	100.00%		H2VW56              	100.00%
Bootstrap support for Q753X3 as seed ortholog is 100%.
Bootstrap support for H2VW56 as seed ortholog is 100%.

Group of orthologs #303. Best score 329 bits
Score difference with first non-orthologous sequence - A.gossypii:329 C.japonica:329

Q757G2              	100.00%		H2WIS1              	100.00%
Bootstrap support for Q757G2 as seed ortholog is 100%.
Bootstrap support for H2WIS1 as seed ortholog is 100%.

Group of orthologs #304. Best score 329 bits
Score difference with first non-orthologous sequence - A.gossypii:329 C.japonica:329

Q756N5              	100.00%		H2WKG9              	100.00%
Bootstrap support for Q756N5 as seed ortholog is 100%.
Bootstrap support for H2WKG9 as seed ortholog is 100%.

Group of orthologs #305. Best score 328 bits
Score difference with first non-orthologous sequence - A.gossypii:328 C.japonica:43

Q75C94              	100.00%		H2W193              	100.00%
Q751Z2              	16.91%		
Bootstrap support for Q75C94 as seed ortholog is 100%.
Bootstrap support for H2W193 as seed ortholog is 80%.

Group of orthologs #306. Best score 327 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:69

Q759W9              	100.00%		H2VIX2              	100.00%
                    	       		H2VQN9              	27.60%
                    	       		H2W1W5              	11.20%
                    	       		H2WGQ0              	9.64%
                    	       		H2VWF0              	6.25%
Bootstrap support for Q759W9 as seed ortholog is 93%.
Bootstrap support for H2VIX2 as seed ortholog is 97%.

Group of orthologs #307. Best score 325 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.japonica:3

Q75AZ3              	100.00%		H2W8R1              	100.00%
                    	       		H2WKX5              	100.00%
Bootstrap support for Q75AZ3 as seed ortholog is 100%.
Bootstrap support for H2W8R1 as seed ortholog is 51%.
Alternative seed ortholog is H2WGY1 (3 bits away from this cluster)
Bootstrap support for H2WKX5 as seed ortholog is 54%.
Alternative seed ortholog is H2WGY1 (3 bits away from this cluster)

Group of orthologs #308. Best score 325 bits
Score difference with first non-orthologous sequence - A.gossypii:325 C.japonica:325

Q75EW4              	100.00%		H2W4G9              	100.00%
Bootstrap support for Q75EW4 as seed ortholog is 100%.
Bootstrap support for H2W4G9 as seed ortholog is 100%.

Group of orthologs #309. Best score 324 bits
Score difference with first non-orthologous sequence - A.gossypii:324 C.japonica:231

Q75DN5              	100.00%		H2W4P4              	100.00%
                    	       		H2WJV3              	37.11%
Bootstrap support for Q75DN5 as seed ortholog is 100%.
Bootstrap support for H2W4P4 as seed ortholog is 99%.

Group of orthologs #310. Best score 324 bits
Score difference with first non-orthologous sequence - A.gossypii:324 C.japonica:324

Q75E77              	100.00%		H2VZD9              	100.00%
Bootstrap support for Q75E77 as seed ortholog is 100%.
Bootstrap support for H2VZD9 as seed ortholog is 100%.

Group of orthologs #311. Best score 323 bits
Score difference with first non-orthologous sequence - A.gossypii:323 C.japonica:323

Q754D6              	100.00%		K7GVE7              	100.00%
                    	       		H2WKC3              	49.55%
Bootstrap support for Q754D6 as seed ortholog is 100%.
Bootstrap support for K7GVE7 as seed ortholog is 100%.

Group of orthologs #312. Best score 323 bits
Score difference with first non-orthologous sequence - A.gossypii:323 C.japonica:323

Q75BS1              	100.00%		H2VS16              	100.00%
Bootstrap support for Q75BS1 as seed ortholog is 100%.
Bootstrap support for H2VS16 as seed ortholog is 100%.

Group of orthologs #313. Best score 322 bits
Score difference with first non-orthologous sequence - A.gossypii:167 C.japonica:207

Q74ZC1              	100.00%		H2WKW5              	100.00%
Bootstrap support for Q74ZC1 as seed ortholog is 99%.
Bootstrap support for H2WKW5 as seed ortholog is 99%.

Group of orthologs #314. Best score 321 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.japonica:148

Q756G5              	100.00%		H2W059              	100.00%
Bootstrap support for Q756G5 as seed ortholog is 99%.
Bootstrap support for H2W059 as seed ortholog is 99%.

Group of orthologs #315. Best score 321 bits
Score difference with first non-orthologous sequence - A.gossypii:254 C.japonica:321

Q74ZL8              	100.00%		H2WD79              	100.00%
Bootstrap support for Q74ZL8 as seed ortholog is 99%.
Bootstrap support for H2WD79 as seed ortholog is 100%.

Group of orthologs #316. Best score 319 bits
Score difference with first non-orthologous sequence - A.gossypii:319 C.japonica:319

Q758H4              	100.00%		H2VZQ7              	100.00%
Bootstrap support for Q758H4 as seed ortholog is 100%.
Bootstrap support for H2VZQ7 as seed ortholog is 100%.

Group of orthologs #317. Best score 319 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.japonica:319

Q74ZW3              	100.00%		K7H6L6              	100.00%
Bootstrap support for Q74ZW3 as seed ortholog is 100%.
Bootstrap support for K7H6L6 as seed ortholog is 100%.

Group of orthologs #318. Best score 318 bits
Score difference with first non-orthologous sequence - A.gossypii:318 C.japonica:318

Q75CU7              	100.00%		H2WFH3              	100.00%
                    	       		K7I7G1              	67.80%
Bootstrap support for Q75CU7 as seed ortholog is 100%.
Bootstrap support for H2WFH3 as seed ortholog is 100%.

Group of orthologs #319. Best score 318 bits
Score difference with first non-orthologous sequence - A.gossypii:318 C.japonica:318

Q74ZW9              	100.00%		H2VGK3              	100.00%
Bootstrap support for Q74ZW9 as seed ortholog is 100%.
Bootstrap support for H2VGK3 as seed ortholog is 100%.

Group of orthologs #320. Best score 318 bits
Score difference with first non-orthologous sequence - A.gossypii:318 C.japonica:216

Q75CI8              	100.00%		H2VK81              	100.00%
Bootstrap support for Q75CI8 as seed ortholog is 100%.
Bootstrap support for H2VK81 as seed ortholog is 99%.

Group of orthologs #321. Best score 318 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:318

Q754X6              	100.00%		H2W787              	100.00%
Bootstrap support for Q754X6 as seed ortholog is 98%.
Bootstrap support for H2W787 as seed ortholog is 100%.

Group of orthologs #322. Best score 317 bits
Score difference with first non-orthologous sequence - A.gossypii:317 C.japonica:317

Q75B10              	100.00%		K7GYJ8              	100.00%
                    	       		H2VTV6              	19.82%
Bootstrap support for Q75B10 as seed ortholog is 100%.
Bootstrap support for K7GYJ8 as seed ortholog is 100%.

Group of orthologs #323. Best score 317 bits
Score difference with first non-orthologous sequence - A.gossypii:317 C.japonica:317

Q751T0              	100.00%		H2VNT6              	100.00%
Bootstrap support for Q751T0 as seed ortholog is 100%.
Bootstrap support for H2VNT6 as seed ortholog is 100%.

Group of orthologs #324. Best score 317 bits
Score difference with first non-orthologous sequence - A.gossypii:317 C.japonica:317

Q75E90              	100.00%		H2VG52              	100.00%
Bootstrap support for Q75E90 as seed ortholog is 100%.
Bootstrap support for H2VG52 as seed ortholog is 100%.

Group of orthologs #325. Best score 317 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:317

Q756M9              	100.00%		H2W416              	100.00%
Bootstrap support for Q756M9 as seed ortholog is 98%.
Bootstrap support for H2W416 as seed ortholog is 100%.

Group of orthologs #326. Best score 316 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.japonica:193

Q757R7              	100.00%		H2VT93              	100.00%
Bootstrap support for Q757R7 as seed ortholog is 99%.
Bootstrap support for H2VT93 as seed ortholog is 99%.

Group of orthologs #327. Best score 313 bits
Score difference with first non-orthologous sequence - A.gossypii:313 C.japonica:313

Q75AE7              	100.00%		H2VUH6              	100.00%
Bootstrap support for Q75AE7 as seed ortholog is 100%.
Bootstrap support for H2VUH6 as seed ortholog is 100%.

Group of orthologs #328. Best score 312 bits
Score difference with first non-orthologous sequence - A.gossypii:312 C.japonica:312

Q759G5              	100.00%		H2WEN4              	100.00%
                    	       		K7I837              	38.83%
                    	       		K7IEB6              	16.24%
                    	       		K7HFY4              	15.99%
                    	       		K7HK26              	15.99%
                    	       		K7IF33              	15.48%
Bootstrap support for Q759G5 as seed ortholog is 100%.
Bootstrap support for H2WEN4 as seed ortholog is 100%.

Group of orthologs #329. Best score 312 bits
Score difference with first non-orthologous sequence - A.gossypii:312 C.japonica:312

Q74ZU1              	100.00%		H2VQA2              	100.00%
                    	       		H2VVU3              	48.00%
Bootstrap support for Q74ZU1 as seed ortholog is 100%.
Bootstrap support for H2VQA2 as seed ortholog is 100%.

Group of orthologs #330. Best score 312 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.japonica:59

Q758E1              	100.00%		H2WRJ0              	100.00%
Q755B5              	42.24%		
Bootstrap support for Q758E1 as seed ortholog is 99%.
Bootstrap support for H2WRJ0 as seed ortholog is 95%.

Group of orthologs #331. Best score 311 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:32

Q9HF56              	100.00%		H2VZA0              	100.00%
Bootstrap support for Q9HF56 as seed ortholog is 99%.
Bootstrap support for H2VZA0 as seed ortholog is 93%.

Group of orthologs #332. Best score 310 bits
Score difference with first non-orthologous sequence - A.gossypii:12 C.japonica:144

Q751T7              	100.00%		K7GXJ4              	100.00%
Bootstrap support for Q751T7 as seed ortholog is 54%.
Alternative seed ortholog is Q757T3 (12 bits away from this cluster)
Bootstrap support for K7GXJ4 as seed ortholog is 99%.

Group of orthologs #333. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.japonica:131

Q754U8              	100.00%		H2VYB5              	100.00%
Bootstrap support for Q754U8 as seed ortholog is 99%.
Bootstrap support for H2VYB5 as seed ortholog is 99%.

Group of orthologs #334. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:66

Q75A26              	100.00%		K7GTU0              	100.00%
Bootstrap support for Q75A26 as seed ortholog is 100%.
Bootstrap support for K7GTU0 as seed ortholog is 99%.

Group of orthologs #335. Best score 307 bits
Score difference with first non-orthologous sequence - A.gossypii:307 C.japonica:307

Q75C13              	100.00%		H2VVA8              	100.00%
Bootstrap support for Q75C13 as seed ortholog is 100%.
Bootstrap support for H2VVA8 as seed ortholog is 100%.

Group of orthologs #336. Best score 307 bits
Score difference with first non-orthologous sequence - A.gossypii:307 C.japonica:307

Q757C6              	100.00%		K7H2E1              	100.00%
Bootstrap support for Q757C6 as seed ortholog is 100%.
Bootstrap support for K7H2E1 as seed ortholog is 100%.

Group of orthologs #337. Best score 306 bits
Score difference with first non-orthologous sequence - A.gossypii:306 C.japonica:200

Q756Y6              	100.00%		H2VVL1              	100.00%
Q756M1              	5.90%		
Bootstrap support for Q756Y6 as seed ortholog is 100%.
Bootstrap support for H2VVL1 as seed ortholog is 100%.

Group of orthologs #338. Best score 306 bits
Score difference with first non-orthologous sequence - A.gossypii:306 C.japonica:306

Q756X5              	100.00%		H2W116              	100.00%
Bootstrap support for Q756X5 as seed ortholog is 100%.
Bootstrap support for H2W116 as seed ortholog is 100%.

Group of orthologs #339. Best score 306 bits
Score difference with first non-orthologous sequence - A.gossypii:306 C.japonica:306

Q759J7              	100.00%		H2WBJ6              	100.00%
Bootstrap support for Q759J7 as seed ortholog is 100%.
Bootstrap support for H2WBJ6 as seed ortholog is 100%.

Group of orthologs #340. Best score 305 bits
Score difference with first non-orthologous sequence - A.gossypii:305 C.japonica:142

Q757Y4              	100.00%		H2W4C7              	100.00%
Bootstrap support for Q757Y4 as seed ortholog is 100%.
Bootstrap support for H2W4C7 as seed ortholog is 99%.

Group of orthologs #341. Best score 305 bits
Score difference with first non-orthologous sequence - A.gossypii:305 C.japonica:230

Q75C90              	100.00%		H2WLM4              	100.00%
Bootstrap support for Q75C90 as seed ortholog is 100%.
Bootstrap support for H2WLM4 as seed ortholog is 100%.

Group of orthologs #342. Best score 304 bits
Score difference with first non-orthologous sequence - A.gossypii:304 C.japonica:304

Q74ZK8              	100.00%		K7H0H0              	100.00%
Bootstrap support for Q74ZK8 as seed ortholog is 100%.
Bootstrap support for K7H0H0 as seed ortholog is 100%.

Group of orthologs #343. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:302

Q755S1              	100.00%		H2VRW4              	100.00%
Bootstrap support for Q755S1 as seed ortholog is 95%.
Bootstrap support for H2VRW4 as seed ortholog is 100%.

Group of orthologs #344. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.japonica:302

Q755K9              	100.00%		K7GVP4              	100.00%
Bootstrap support for Q755K9 as seed ortholog is 100%.
Bootstrap support for K7GVP4 as seed ortholog is 100%.

Group of orthologs #345. Best score 302 bits
Score difference with first non-orthologous sequence - A.gossypii:302 C.japonica:302

Q759C6              	100.00%		K7H2W2              	100.00%
Bootstrap support for Q759C6 as seed ortholog is 100%.
Bootstrap support for K7H2W2 as seed ortholog is 100%.

Group of orthologs #346. Best score 301 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:95

Q75CE2              	100.00%		H2WCC8              	100.00%
                    	       		K7H3M0              	25.82%
Bootstrap support for Q75CE2 as seed ortholog is 88%.
Bootstrap support for H2WCC8 as seed ortholog is 96%.

Group of orthologs #347. Best score 301 bits
Score difference with first non-orthologous sequence - A.gossypii:301 C.japonica:301

Q750R2              	100.00%		K7H171              	100.00%
Bootstrap support for Q750R2 as seed ortholog is 100%.
Bootstrap support for K7H171 as seed ortholog is 100%.

Group of orthologs #348. Best score 298 bits
Score difference with first non-orthologous sequence - A.gossypii:298 C.japonica:298

Q750Z9              	100.00%		H2W9M5              	100.00%
Bootstrap support for Q750Z9 as seed ortholog is 100%.
Bootstrap support for H2W9M5 as seed ortholog is 100%.

Group of orthologs #349. Best score 298 bits
Score difference with first non-orthologous sequence - A.gossypii:298 C.japonica:298

Q75CQ6              	100.00%		H2W9E4              	100.00%
Bootstrap support for Q75CQ6 as seed ortholog is 100%.
Bootstrap support for H2W9E4 as seed ortholog is 100%.

Group of orthologs #350. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 C.japonica:297

Q75DT8              	100.00%		H2VY58              	100.00%
Bootstrap support for Q75DT8 as seed ortholog is 100%.
Bootstrap support for H2VY58 as seed ortholog is 100%.

Group of orthologs #351. Best score 296 bits
Score difference with first non-orthologous sequence - A.gossypii:296 C.japonica:296

Q753J9              	100.00%		H2WEU8              	100.00%
Bootstrap support for Q753J9 as seed ortholog is 100%.
Bootstrap support for H2WEU8 as seed ortholog is 100%.

Group of orthologs #352. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:295 C.japonica:295

Q756V5              	100.00%		H2VPB3              	100.00%
Bootstrap support for Q756V5 as seed ortholog is 100%.
Bootstrap support for H2VPB3 as seed ortholog is 100%.

Group of orthologs #353. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.japonica:114

Q75F95              	100.00%		H2WKD0              	100.00%
Bootstrap support for Q75F95 as seed ortholog is 99%.
Bootstrap support for H2WKD0 as seed ortholog is 99%.

Group of orthologs #354. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:294 C.japonica:294

Q759J2              	100.00%		H2WME6              	100.00%
Bootstrap support for Q759J2 as seed ortholog is 100%.
Bootstrap support for H2WME6 as seed ortholog is 100%.

Group of orthologs #355. Best score 293 bits
Score difference with first non-orthologous sequence - A.gossypii:293 C.japonica:293

Q754D2              	100.00%		H2W475              	100.00%
Bootstrap support for Q754D2 as seed ortholog is 100%.
Bootstrap support for H2W475 as seed ortholog is 100%.

Group of orthologs #356. Best score 292 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.japonica:7

Q758Q0              	100.00%		H2WEP6              	100.00%
Bootstrap support for Q758Q0 as seed ortholog is 98%.
Bootstrap support for H2WEP6 as seed ortholog is 55%.
Alternative seed ortholog is H2VW73 (7 bits away from this cluster)

Group of orthologs #357. Best score 291 bits
Score difference with first non-orthologous sequence - A.gossypii:291 C.japonica:291

Q75BA7              	100.00%		K7GW81              	100.00%
Bootstrap support for Q75BA7 as seed ortholog is 100%.
Bootstrap support for K7GW81 as seed ortholog is 100%.

Group of orthologs #358. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:290 C.japonica:168

Q759H9              	100.00%		H2VRF1              	100.00%
Bootstrap support for Q759H9 as seed ortholog is 100%.
Bootstrap support for H2VRF1 as seed ortholog is 100%.

Group of orthologs #359. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:290 C.japonica:290

Q75EA0              	100.00%		H2W2Q9              	100.00%
Bootstrap support for Q75EA0 as seed ortholog is 100%.
Bootstrap support for H2W2Q9 as seed ortholog is 100%.

Group of orthologs #360. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:289

Q757J8              	100.00%		H2VSS4              	100.00%
Bootstrap support for Q757J8 as seed ortholog is 98%.
Bootstrap support for H2VSS4 as seed ortholog is 100%.

Group of orthologs #361. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.japonica:289

Q75CY7              	100.00%		H2VXA6              	100.00%
Bootstrap support for Q75CY7 as seed ortholog is 100%.
Bootstrap support for H2VXA6 as seed ortholog is 100%.

Group of orthologs #362. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.japonica:289

Q75E36              	100.00%		H2VXP4              	100.00%
Bootstrap support for Q75E36 as seed ortholog is 100%.
Bootstrap support for H2VXP4 as seed ortholog is 100%.

Group of orthologs #363. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:289

Q75F80              	100.00%		H2VYZ5              	100.00%
Bootstrap support for Q75F80 as seed ortholog is 99%.
Bootstrap support for H2VYZ5 as seed ortholog is 100%.

Group of orthologs #364. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 C.japonica:289

Q752K8              	100.00%		H2WNX6              	100.00%
Bootstrap support for Q752K8 as seed ortholog is 100%.
Bootstrap support for H2WNX6 as seed ortholog is 100%.

Group of orthologs #365. Best score 288 bits
Score difference with first non-orthologous sequence - A.gossypii:288 C.japonica:125

Q750G1              	100.00%		H2VTG9              	100.00%
                    	       		K7I6Q6              	7.72%
Bootstrap support for Q750G1 as seed ortholog is 100%.
Bootstrap support for H2VTG9 as seed ortholog is 97%.

Group of orthologs #366. Best score 288 bits
Score difference with first non-orthologous sequence - A.gossypii:288 C.japonica:288

Q74ZJ1              	100.00%		H2WGV7              	100.00%
Bootstrap support for Q74ZJ1 as seed ortholog is 100%.
Bootstrap support for H2WGV7 as seed ortholog is 100%.

Group of orthologs #367. Best score 288 bits
Score difference with first non-orthologous sequence - A.gossypii:288 C.japonica:46

Q75DZ9              	100.00%		K7GVZ1              	100.00%
Bootstrap support for Q75DZ9 as seed ortholog is 100%.
Bootstrap support for K7GVZ1 as seed ortholog is 84%.

Group of orthologs #368. Best score 287 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.japonica:77

Q753A5              	100.00%		K7GYQ3              	100.00%
Bootstrap support for Q753A5 as seed ortholog is 100%.
Bootstrap support for K7GYQ3 as seed ortholog is 96%.

Group of orthologs #369. Best score 286 bits
Score difference with first non-orthologous sequence - A.gossypii:286 C.japonica:286

Q75AR1              	100.00%		H2VJR0              	100.00%
Bootstrap support for Q75AR1 as seed ortholog is 100%.
Bootstrap support for H2VJR0 as seed ortholog is 100%.

Group of orthologs #370. Best score 286 bits
Score difference with first non-orthologous sequence - A.gossypii:286 C.japonica:286

Q755T1              	100.00%		H2WCM3              	100.00%
Bootstrap support for Q755T1 as seed ortholog is 100%.
Bootstrap support for H2WCM3 as seed ortholog is 100%.

Group of orthologs #371. Best score 286 bits
Score difference with first non-orthologous sequence - A.gossypii:286 C.japonica:286

Q75CN5              	100.00%		H2WJC6              	100.00%
Bootstrap support for Q75CN5 as seed ortholog is 100%.
Bootstrap support for H2WJC6 as seed ortholog is 100%.

Group of orthologs #372. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.japonica:285

Q74ZF8              	100.00%		H2VZY7              	100.00%
Bootstrap support for Q74ZF8 as seed ortholog is 100%.
Bootstrap support for H2VZY7 as seed ortholog is 100%.

Group of orthologs #373. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.japonica:285

Q757X5              	100.00%		H2WFI8              	100.00%
Bootstrap support for Q757X5 as seed ortholog is 100%.
Bootstrap support for H2WFI8 as seed ortholog is 100%.

Group of orthologs #374. Best score 285 bits
Score difference with first non-orthologous sequence - A.gossypii:285 C.japonica:31

Q75D71              	100.00%		K7H8E8              	100.00%
Bootstrap support for Q75D71 as seed ortholog is 100%.
Bootstrap support for K7H8E8 as seed ortholog is 72%.
Alternative seed ortholog is H2VMV2 (31 bits away from this cluster)

Group of orthologs #375. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:284 C.japonica:284

Q754Z6              	100.00%		H2WD16              	100.00%
                    	       		K7IDR7              	21.72%
Bootstrap support for Q754Z6 as seed ortholog is 100%.
Bootstrap support for H2WD16 as seed ortholog is 100%.

Group of orthologs #376. Best score 282 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.japonica:105

Q756S0              	100.00%		H2WEH1              	100.00%
                    	       		H2VPZ1              	77.49%
                    	       		H2VLU1              	10.82%
Bootstrap support for Q756S0 as seed ortholog is 100%.
Bootstrap support for H2WEH1 as seed ortholog is 99%.

Group of orthologs #377. Best score 282 bits
Score difference with first non-orthologous sequence - A.gossypii:282 C.japonica:282

Q758F6              	100.00%		H2VKJ7              	100.00%
Bootstrap support for Q758F6 as seed ortholog is 100%.
Bootstrap support for H2VKJ7 as seed ortholog is 100%.

Group of orthologs #378. Best score 282 bits
Score difference with first non-orthologous sequence - A.gossypii:282 C.japonica:282

Q75BC3              	100.00%		K7GUF1              	100.00%
Bootstrap support for Q75BC3 as seed ortholog is 100%.
Bootstrap support for K7GUF1 as seed ortholog is 100%.

Group of orthologs #379. Best score 282 bits
Score difference with first non-orthologous sequence - A.gossypii:282 C.japonica:282

Q75CI2              	100.00%		K7GZQ5              	100.00%
Bootstrap support for Q75CI2 as seed ortholog is 100%.
Bootstrap support for K7GZQ5 as seed ortholog is 100%.

Group of orthologs #380. Best score 281 bits
Score difference with first non-orthologous sequence - A.gossypii:281 C.japonica:56

Q758K6              	100.00%		H2WQP4              	100.00%
Q75AN1              	9.56%		
Bootstrap support for Q758K6 as seed ortholog is 100%.
Bootstrap support for H2WQP4 as seed ortholog is 92%.

Group of orthologs #381. Best score 280 bits
Score difference with first non-orthologous sequence - A.gossypii:280 C.japonica:280

Q758X6              	100.00%		H2VN89              	100.00%
Bootstrap support for Q758X6 as seed ortholog is 100%.
Bootstrap support for H2VN89 as seed ortholog is 100%.

Group of orthologs #382. Best score 280 bits
Score difference with first non-orthologous sequence - A.gossypii:280 C.japonica:280

Q758F8              	100.00%		H2W134              	100.00%
Bootstrap support for Q758F8 as seed ortholog is 100%.
Bootstrap support for H2W134 as seed ortholog is 100%.

Group of orthologs #383. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:224

Q75C99              	100.00%		H2WRE4              	100.00%
                    	       		H2W8X5              	27.92%
Bootstrap support for Q75C99 as seed ortholog is 98%.
Bootstrap support for H2WRE4 as seed ortholog is 100%.

Group of orthologs #384. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.japonica:279

Q753V8              	100.00%		H2VMX6              	100.00%
Bootstrap support for Q753V8 as seed ortholog is 100%.
Bootstrap support for H2VMX6 as seed ortholog is 100%.

Group of orthologs #385. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 C.japonica:279

Q750P5              	100.00%		H2WIQ5              	100.00%
Bootstrap support for Q750P5 as seed ortholog is 100%.
Bootstrap support for H2WIQ5 as seed ortholog is 100%.

Group of orthologs #386. Best score 278 bits
Score difference with first non-orthologous sequence - A.gossypii:278 C.japonica:219

Q75F44              	100.00%		H2WLB2              	100.00%
Bootstrap support for Q75F44 as seed ortholog is 100%.
Bootstrap support for H2WLB2 as seed ortholog is 100%.

Group of orthologs #387. Best score 277 bits
Score difference with first non-orthologous sequence - A.gossypii:277 C.japonica:212

Q756K6              	100.00%		H2VHJ1              	100.00%
Bootstrap support for Q756K6 as seed ortholog is 100%.
Bootstrap support for H2VHJ1 as seed ortholog is 100%.

Group of orthologs #388. Best score 276 bits
Score difference with first non-orthologous sequence - A.gossypii:276 C.japonica:276

Q75E11              	100.00%		H2WN11              	100.00%
Bootstrap support for Q75E11 as seed ortholog is 100%.
Bootstrap support for H2WN11 as seed ortholog is 100%.

Group of orthologs #389. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.japonica:275

Q75A46              	100.00%		H2VJD4              	100.00%
Bootstrap support for Q75A46 as seed ortholog is 100%.
Bootstrap support for H2VJD4 as seed ortholog is 100%.

Group of orthologs #390. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:275 C.japonica:275

Q75CE1              	100.00%		H2VH94              	100.00%
Bootstrap support for Q75CE1 as seed ortholog is 100%.
Bootstrap support for H2VH94 as seed ortholog is 100%.

Group of orthologs #391. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:139

Q751X9              	100.00%		K7H4Z4              	100.00%
Bootstrap support for Q751X9 as seed ortholog is 99%.
Bootstrap support for K7H4Z4 as seed ortholog is 99%.

Group of orthologs #392. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 C.japonica:274

Q75BE8              	100.00%		H2VIT5              	100.00%
                    	       		H2W8C3              	18.40%
Bootstrap support for Q75BE8 as seed ortholog is 100%.
Bootstrap support for H2VIT5 as seed ortholog is 100%.

Group of orthologs #393. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 C.japonica:212

Q759R0              	100.00%		H2W4N9              	100.00%
Bootstrap support for Q759R0 as seed ortholog is 100%.
Bootstrap support for H2W4N9 as seed ortholog is 99%.

Group of orthologs #394. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 C.japonica:274

Q752U0              	100.00%		H2WCX0              	100.00%
Bootstrap support for Q752U0 as seed ortholog is 100%.
Bootstrap support for H2WCX0 as seed ortholog is 100%.

Group of orthologs #395. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:273 C.japonica:273

Q755D9              	100.00%		H2WJS9              	100.00%
Bootstrap support for Q755D9 as seed ortholog is 100%.
Bootstrap support for H2WJS9 as seed ortholog is 100%.

Group of orthologs #396. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:273 C.japonica:273

Q756Z9              	100.00%		H2WI39              	100.00%
Bootstrap support for Q756Z9 as seed ortholog is 100%.
Bootstrap support for H2WI39 as seed ortholog is 100%.

Group of orthologs #397. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:60

Q75D02              	100.00%		H2WC34              	100.00%
Bootstrap support for Q75D02 as seed ortholog is 99%.
Bootstrap support for H2WC34 as seed ortholog is 99%.

Group of orthologs #398. Best score 272 bits
Score difference with first non-orthologous sequence - A.gossypii:272 C.japonica:216

Q75CU3              	100.00%		H2W6T7              	100.00%
                    	       		H2WFL2              	32.22%
Bootstrap support for Q75CU3 as seed ortholog is 100%.
Bootstrap support for H2W6T7 as seed ortholog is 99%.

Group of orthologs #399. Best score 271 bits
Score difference with first non-orthologous sequence - A.gossypii:271 C.japonica:193

Q74ZR4              	100.00%		K7H701              	100.00%
Bootstrap support for Q74ZR4 as seed ortholog is 100%.
Bootstrap support for K7H701 as seed ortholog is 100%.

Group of orthologs #400. Best score 271 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:129

Q752E9              	100.00%		K7H4Z7              	100.00%
Bootstrap support for Q752E9 as seed ortholog is 95%.
Bootstrap support for K7H4Z7 as seed ortholog is 99%.

Group of orthologs #401. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.japonica:270

Q75BF4              	100.00%		H2VYS7              	100.00%
Bootstrap support for Q75BF4 as seed ortholog is 100%.
Bootstrap support for H2VYS7 as seed ortholog is 100%.

Group of orthologs #402. Best score 269 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.japonica:89

Q755C4              	100.00%		H2W3P3              	100.00%
                    	       		H2WV25              	100.00%
Bootstrap support for Q755C4 as seed ortholog is 99%.
Bootstrap support for H2W3P3 as seed ortholog is 99%.
Bootstrap support for H2WV25 as seed ortholog is 99%.

Group of orthologs #403. Best score 269 bits
Score difference with first non-orthologous sequence - A.gossypii:269 C.japonica:269

Q752X7              	100.00%		H2VRE1              	100.00%
Bootstrap support for Q752X7 as seed ortholog is 100%.
Bootstrap support for H2VRE1 as seed ortholog is 100%.

Group of orthologs #404. Best score 269 bits
Score difference with first non-orthologous sequence - A.gossypii:269 C.japonica:269

Q756I7              	100.00%		H2VMZ3              	100.00%
Bootstrap support for Q756I7 as seed ortholog is 100%.
Bootstrap support for H2VMZ3 as seed ortholog is 100%.

Group of orthologs #405. Best score 269 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:72

Q755T4              	100.00%		H2WBW1              	100.00%
Bootstrap support for Q755T4 as seed ortholog is 99%.
Bootstrap support for H2WBW1 as seed ortholog is 99%.

Group of orthologs #406. Best score 268 bits
Score difference with first non-orthologous sequence - A.gossypii:145 C.japonica:268

Q756T8              	100.00%		H2WHR6              	100.00%
                    	       		H2W5J8              	25.13%
Bootstrap support for Q756T8 as seed ortholog is 99%.
Bootstrap support for H2WHR6 as seed ortholog is 100%.

Group of orthologs #407. Best score 268 bits
Score difference with first non-orthologous sequence - A.gossypii:268 C.japonica:268

Q756Y3              	100.00%		H2VQM5              	100.00%
Bootstrap support for Q756Y3 as seed ortholog is 100%.
Bootstrap support for H2VQM5 as seed ortholog is 100%.

Group of orthologs #408. Best score 268 bits
Score difference with first non-orthologous sequence - A.gossypii:268 C.japonica:268

Q757P6              	100.00%		H2W218              	100.00%
Bootstrap support for Q757P6 as seed ortholog is 100%.
Bootstrap support for H2W218 as seed ortholog is 100%.

Group of orthologs #409. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.japonica:267

Q75CI9              	100.00%		H2VRX9              	100.00%
Bootstrap support for Q75CI9 as seed ortholog is 100%.
Bootstrap support for H2VRX9 as seed ortholog is 100%.

Group of orthologs #410. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.japonica:267

Q756U4              	100.00%		H2W1C2              	100.00%
Bootstrap support for Q756U4 as seed ortholog is 100%.
Bootstrap support for H2W1C2 as seed ortholog is 100%.

Group of orthologs #411. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 C.japonica:267

Q758U0              	100.00%		H2VZV0              	100.00%
Bootstrap support for Q758U0 as seed ortholog is 100%.
Bootstrap support for H2VZV0 as seed ortholog is 100%.

Group of orthologs #412. Best score 266 bits
Score difference with first non-orthologous sequence - A.gossypii:266 C.japonica:266

Q74Z82              	100.00%		H2VS39              	100.00%
Bootstrap support for Q74Z82 as seed ortholog is 100%.
Bootstrap support for H2VS39 as seed ortholog is 100%.

Group of orthologs #413. Best score 266 bits
Score difference with first non-orthologous sequence - A.gossypii:266 C.japonica:153

Q756T0              	100.00%		H2VVD5              	100.00%
Bootstrap support for Q756T0 as seed ortholog is 100%.
Bootstrap support for H2VVD5 as seed ortholog is 100%.

Group of orthologs #414. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.japonica:265

Q755A7              	100.00%		H2VJJ4              	100.00%
Bootstrap support for Q755A7 as seed ortholog is 100%.
Bootstrap support for H2VJJ4 as seed ortholog is 100%.

Group of orthologs #415. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.japonica:265

Q754W9              	100.00%		H2W032              	100.00%
Bootstrap support for Q754W9 as seed ortholog is 100%.
Bootstrap support for H2W032 as seed ortholog is 100%.

Group of orthologs #416. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.japonica:265

Q759T6              	100.00%		H2W5K1              	100.00%
Bootstrap support for Q759T6 as seed ortholog is 100%.
Bootstrap support for H2W5K1 as seed ortholog is 100%.

Group of orthologs #417. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.japonica:265

Q755T8              	100.00%		H2WQC6              	100.00%
Bootstrap support for Q755T8 as seed ortholog is 100%.
Bootstrap support for H2WQC6 as seed ortholog is 100%.

Group of orthologs #418. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.japonica:265

Q759R5              	100.00%		H2WPV0              	100.00%
Bootstrap support for Q759R5 as seed ortholog is 100%.
Bootstrap support for H2WPV0 as seed ortholog is 100%.

Group of orthologs #419. Best score 265 bits
Score difference with first non-orthologous sequence - A.gossypii:265 C.japonica:265

Q757U6              	100.00%		K7HQH2              	100.00%
Bootstrap support for Q757U6 as seed ortholog is 100%.
Bootstrap support for K7HQH2 as seed ortholog is 100%.

Group of orthologs #420. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:264 C.japonica:74

Q75CR2              	100.00%		H2VGV8              	100.00%
                    	       		K7GWE0              	20.40%
Bootstrap support for Q75CR2 as seed ortholog is 100%.
Bootstrap support for H2VGV8 as seed ortholog is 89%.

Group of orthologs #421. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:264 C.japonica:264

Q758S7              	100.00%		H2VP44              	100.00%
                    	       		H2VQK1              	77.61%
Bootstrap support for Q758S7 as seed ortholog is 100%.
Bootstrap support for H2VP44 as seed ortholog is 100%.

Group of orthologs #422. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.japonica:264

Q750C1              	100.00%		H2VVA7              	100.00%
Bootstrap support for Q750C1 as seed ortholog is 100%.
Bootstrap support for H2VVA7 as seed ortholog is 100%.

Group of orthologs #423. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.japonica:264

Q757D0              	100.00%		H2VXR6              	100.00%
Bootstrap support for Q757D0 as seed ortholog is 77%.
Bootstrap support for H2VXR6 as seed ortholog is 100%.

Group of orthologs #424. Best score 263 bits
Score difference with first non-orthologous sequence - A.gossypii:263 C.japonica:263

Q751I2              	100.00%		H2VH08              	100.00%
Bootstrap support for Q751I2 as seed ortholog is 100%.
Bootstrap support for H2VH08 as seed ortholog is 100%.

Group of orthologs #425. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.japonica:262

Q752Z5              	100.00%		H2VHS4              	100.00%
Bootstrap support for Q752Z5 as seed ortholog is 100%.
Bootstrap support for H2VHS4 as seed ortholog is 100%.

Group of orthologs #426. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.japonica:262

Q750Y8              	100.00%		H2WJ11              	100.00%
Bootstrap support for Q750Y8 as seed ortholog is 100%.
Bootstrap support for H2WJ11 as seed ortholog is 100%.

Group of orthologs #427. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 C.japonica:183

Q75AJ9              	100.00%		H2WEP1              	100.00%
Bootstrap support for Q75AJ9 as seed ortholog is 100%.
Bootstrap support for H2WEP1 as seed ortholog is 99%.

Group of orthologs #428. Best score 261 bits
Score difference with first non-orthologous sequence - A.gossypii:261 C.japonica:164

Q750T7              	100.00%		H2W8T3              	100.00%
Q758X0              	44.29%		
Bootstrap support for Q750T7 as seed ortholog is 100%.
Bootstrap support for H2W8T3 as seed ortholog is 99%.

Group of orthologs #429. Best score 260 bits
Score difference with first non-orthologous sequence - A.gossypii:260 C.japonica:260

Q759C0              	100.00%		H2VPV5              	100.00%
Bootstrap support for Q759C0 as seed ortholog is 100%.
Bootstrap support for H2VPV5 as seed ortholog is 100%.

Group of orthologs #430. Best score 260 bits
Score difference with first non-orthologous sequence - A.gossypii:260 C.japonica:215

Q756J9              	100.00%		H2VWG6              	100.00%
Bootstrap support for Q756J9 as seed ortholog is 100%.
Bootstrap support for H2VWG6 as seed ortholog is 100%.

Group of orthologs #431. Best score 260 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.japonica:260

Q758L6              	100.00%		H2WL93              	100.00%
Bootstrap support for Q758L6 as seed ortholog is 100%.
Bootstrap support for H2WL93 as seed ortholog is 100%.

Group of orthologs #432. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.japonica:259

Q75D52              	100.00%		H2WDZ8              	100.00%
Bootstrap support for Q75D52 as seed ortholog is 100%.
Bootstrap support for H2WDZ8 as seed ortholog is 100%.

Group of orthologs #433. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.japonica:259

Q753D4              	100.00%		K7H1Y5              	100.00%
Bootstrap support for Q753D4 as seed ortholog is 100%.
Bootstrap support for K7H1Y5 as seed ortholog is 100%.

Group of orthologs #434. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:259 C.japonica:259

Q753J4              	100.00%		K7H920              	100.00%
Bootstrap support for Q753J4 as seed ortholog is 100%.
Bootstrap support for K7H920 as seed ortholog is 100%.

Group of orthologs #435. Best score 258 bits
Score difference with first non-orthologous sequence - A.gossypii:258 C.japonica:258

Q757G9              	100.00%		H2VJK4              	100.00%
Bootstrap support for Q757G9 as seed ortholog is 100%.
Bootstrap support for H2VJK4 as seed ortholog is 100%.

Group of orthologs #436. Best score 257 bits
Score difference with first non-orthologous sequence - A.gossypii:257 C.japonica:177

Q75ED1              	100.00%		H2WGY3              	100.00%
                    	       		H2WGA0              	27.24%
                    	       		K7IH70              	5.10%
Bootstrap support for Q75ED1 as seed ortholog is 100%.
Bootstrap support for H2WGY3 as seed ortholog is 99%.

Group of orthologs #437. Best score 257 bits
Score difference with first non-orthologous sequence - A.gossypii:257 C.japonica:257

Q756X6              	100.00%		H2WQH8              	100.00%
Bootstrap support for Q756X6 as seed ortholog is 100%.
Bootstrap support for H2WQH8 as seed ortholog is 100%.

Group of orthologs #438. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.japonica:97

Q75C20              	100.00%		H2WKU2              	100.00%
                    	       		H2W2W7              	23.77%
Bootstrap support for Q75C20 as seed ortholog is 100%.
Bootstrap support for H2WKU2 as seed ortholog is 98%.

Group of orthologs #439. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:256 C.japonica:256

Q754U3              	100.00%		H2WCT9              	100.00%
Bootstrap support for Q754U3 as seed ortholog is 100%.
Bootstrap support for H2WCT9 as seed ortholog is 100%.

Group of orthologs #440. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:256 C.japonica:256

Q74ZQ3              	100.00%		H2WIR8              	100.00%
Bootstrap support for Q74ZQ3 as seed ortholog is 100%.
Bootstrap support for H2WIR8 as seed ortholog is 100%.

Group of orthologs #441. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:256 C.japonica:256

Q75AG4              	100.00%		H2WA21              	100.00%
Bootstrap support for Q75AG4 as seed ortholog is 100%.
Bootstrap support for H2WA21 as seed ortholog is 100%.

Group of orthologs #442. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:256 C.japonica:107

Q75DI8              	100.00%		H2WFC6              	100.00%
Bootstrap support for Q75DI8 as seed ortholog is 100%.
Bootstrap support for H2WFC6 as seed ortholog is 99%.

Group of orthologs #443. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:65

Q757S7              	100.00%		K7GUC9              	100.00%
Bootstrap support for Q757S7 as seed ortholog is 88%.
Bootstrap support for K7GUC9 as seed ortholog is 88%.

Group of orthologs #444. Best score 255 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.japonica:162

Q753G9              	100.00%		K7H6J8              	100.00%
                    	       		H2VMY4              	24.77%
                    	       		H2VS52              	22.34%
Bootstrap support for Q753G9 as seed ortholog is 83%.
Bootstrap support for K7H6J8 as seed ortholog is 99%.

Group of orthologs #445. Best score 255 bits
Score difference with first non-orthologous sequence - A.gossypii:255 C.japonica:255

Q74ZH1              	100.00%		H2VWI5              	100.00%
Bootstrap support for Q74ZH1 as seed ortholog is 100%.
Bootstrap support for H2VWI5 as seed ortholog is 100%.

Group of orthologs #446. Best score 255 bits
Score difference with first non-orthologous sequence - A.gossypii:255 C.japonica:255

Q757D2              	100.00%		H2W3B4              	100.00%
Bootstrap support for Q757D2 as seed ortholog is 100%.
Bootstrap support for H2W3B4 as seed ortholog is 100%.

Group of orthologs #447. Best score 255 bits
Score difference with first non-orthologous sequence - A.gossypii:255 C.japonica:255

Q75CQ9              	100.00%		H2VZF3              	100.00%
Bootstrap support for Q75CQ9 as seed ortholog is 100%.
Bootstrap support for H2VZF3 as seed ortholog is 100%.

Group of orthologs #448. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.japonica:254

Q753N3              	100.00%		H2VSZ3              	100.00%
                    	       		H2VJ83              	7.16%
Bootstrap support for Q753N3 as seed ortholog is 100%.
Bootstrap support for H2VSZ3 as seed ortholog is 100%.

Group of orthologs #449. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:254 C.japonica:254

Q74Z71              	100.00%		H2WKZ8              	100.00%
Bootstrap support for Q74Z71 as seed ortholog is 100%.
Bootstrap support for H2WKZ8 as seed ortholog is 100%.

Group of orthologs #450. Best score 254 bits
Score difference with first non-orthologous sequence - A.gossypii:39 C.japonica:39

Q75BH1              	100.00%		H2W8N5              	100.00%
Bootstrap support for Q75BH1 as seed ortholog is 87%.
Bootstrap support for H2W8N5 as seed ortholog is 87%.

Group of orthologs #451. Best score 253 bits
Score difference with first non-orthologous sequence - A.gossypii:253 C.japonica:157

Q75A66              	100.00%		H2VWY5              	100.00%
                    	       		H2WGC2              	9.28%
Bootstrap support for Q75A66 as seed ortholog is 100%.
Bootstrap support for H2VWY5 as seed ortholog is 99%.

Group of orthologs #452. Best score 253 bits
Score difference with first non-orthologous sequence - A.gossypii:253 C.japonica:253

Q757Z5              	100.00%		H2VWT0              	100.00%
Bootstrap support for Q757Z5 as seed ortholog is 100%.
Bootstrap support for H2VWT0 as seed ortholog is 100%.

Group of orthologs #453. Best score 253 bits
Score difference with first non-orthologous sequence - A.gossypii:253 C.japonica:253

Q74ZB1              	100.00%		H2WEB0              	100.00%
Bootstrap support for Q74ZB1 as seed ortholog is 100%.
Bootstrap support for H2WEB0 as seed ortholog is 100%.

Group of orthologs #454. Best score 252 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.japonica:252

Q75DR0              	100.00%		H2VQ12              	100.00%
                    	       		K7H0L1              	20.16%
Bootstrap support for Q75DR0 as seed ortholog is 99%.
Bootstrap support for H2VQ12 as seed ortholog is 100%.

Group of orthologs #455. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.japonica:50

Q756F8              	100.00%		K7H2T2              	100.00%
Bootstrap support for Q756F8 as seed ortholog is 100%.
Bootstrap support for K7H2T2 as seed ortholog is 90%.

Group of orthologs #456. Best score 251 bits
Score difference with first non-orthologous sequence - A.gossypii:251 C.japonica:251

Q75E55              	100.00%		K7IG09              	100.00%
Bootstrap support for Q75E55 as seed ortholog is 100%.
Bootstrap support for K7IG09 as seed ortholog is 100%.

Group of orthologs #457. Best score 250 bits
Score difference with first non-orthologous sequence - A.gossypii:10 C.japonica:250

Q754F9              	100.00%		H2W294              	100.00%
Bootstrap support for Q754F9 as seed ortholog is 55%.
Alternative seed ortholog is Q756L6 (10 bits away from this cluster)
Bootstrap support for H2W294 as seed ortholog is 100%.

Group of orthologs #458. Best score 248 bits
Score difference with first non-orthologous sequence - A.gossypii:248 C.japonica:248

Q750D0              	100.00%		H2VTC2              	100.00%
Bootstrap support for Q750D0 as seed ortholog is 100%.
Bootstrap support for H2VTC2 as seed ortholog is 100%.

Group of orthologs #459. Best score 248 bits
Score difference with first non-orthologous sequence - A.gossypii:248 C.japonica:248

Q75B75              	100.00%		H2WEM6              	100.00%
Bootstrap support for Q75B75 as seed ortholog is 100%.
Bootstrap support for H2WEM6 as seed ortholog is 100%.

Group of orthologs #460. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:32

Q9HF54              	100.00%		K7H5X0              	100.00%
Q75D41              	41.18%		
Bootstrap support for Q9HF54 as seed ortholog is 99%.
Bootstrap support for K7H5X0 as seed ortholog is 91%.

Group of orthologs #461. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:247

Q758V2              	100.00%		K7GUS9              	100.00%
Bootstrap support for Q758V2 as seed ortholog is 99%.
Bootstrap support for K7GUS9 as seed ortholog is 100%.

Group of orthologs #462. Best score 246 bits
Score difference with first non-orthologous sequence - A.gossypii:246 C.japonica:246

Q75B99              	100.00%		H2XDA6              	100.00%
Bootstrap support for Q75B99 as seed ortholog is 100%.
Bootstrap support for H2XDA6 as seed ortholog is 100%.

Group of orthologs #463. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.japonica:245

Q75ER7              	100.00%		H2WJE5              	100.00%
                    	       		K7HZL9              	63.68%
Bootstrap support for Q75ER7 as seed ortholog is 100%.
Bootstrap support for H2WJE5 as seed ortholog is 100%.

Group of orthologs #464. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.japonica:245

Q754W1              	100.00%		K7H9W1              	100.00%
                    	       		K7I2Y7              	53.28%
Bootstrap support for Q754W1 as seed ortholog is 100%.
Bootstrap support for K7H9W1 as seed ortholog is 100%.

Group of orthologs #465. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.japonica:245

Q75B77              	100.00%		K7HSQ1              	100.00%
                    	       		K7I6Y6              	100.00%
Bootstrap support for Q75B77 as seed ortholog is 100%.
Bootstrap support for K7HSQ1 as seed ortholog is 100%.
Bootstrap support for K7I6Y6 as seed ortholog is 100%.

Group of orthologs #466. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.japonica:245

Q75F11              	100.00%		H2VZC4              	100.00%
Bootstrap support for Q75F11 as seed ortholog is 100%.
Bootstrap support for H2VZC4 as seed ortholog is 100%.

Group of orthologs #467. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 C.japonica:245

Q755W8              	100.00%		H2WB44              	100.00%
Bootstrap support for Q755W8 as seed ortholog is 100%.
Bootstrap support for H2WB44 as seed ortholog is 100%.

Group of orthologs #468. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.japonica:122

Q75BM2              	100.00%		H2WK22              	100.00%
Bootstrap support for Q75BM2 as seed ortholog is 98%.
Bootstrap support for H2WK22 as seed ortholog is 99%.

Group of orthologs #469. Best score 244 bits
Score difference with first non-orthologous sequence - A.gossypii:244 C.japonica:244

Q74ZK3              	100.00%		H2WEU4              	100.00%
Bootstrap support for Q74ZK3 as seed ortholog is 100%.
Bootstrap support for H2WEU4 as seed ortholog is 100%.

Group of orthologs #470. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.japonica:243

Q756F9              	100.00%		H2WET9              	100.00%
                    	       		H2VM05              	5.16%
Bootstrap support for Q756F9 as seed ortholog is 100%.
Bootstrap support for H2WET9 as seed ortholog is 100%.

Group of orthologs #471. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.japonica:181

Q759L2              	100.00%		H2WKI5              	100.00%
Bootstrap support for Q759L2 as seed ortholog is 100%.
Bootstrap support for H2WKI5 as seed ortholog is 100%.

Group of orthologs #472. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:243 C.japonica:243

Q75D62              	100.00%		K7H1L0              	100.00%
Bootstrap support for Q75D62 as seed ortholog is 100%.
Bootstrap support for K7H1L0 as seed ortholog is 100%.

Group of orthologs #473. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:242 C.japonica:242

Q75A91              	100.00%		H2WCB3              	100.00%
Bootstrap support for Q75A91 as seed ortholog is 100%.
Bootstrap support for H2WCB3 as seed ortholog is 100%.

Group of orthologs #474. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:242 C.japonica:242

Q75A24              	100.00%		H2WCS2              	100.00%
Bootstrap support for Q75A24 as seed ortholog is 100%.
Bootstrap support for H2WCS2 as seed ortholog is 100%.

Group of orthologs #475. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:242 C.japonica:242

Q751S5              	100.00%		H2WN99              	100.00%
Bootstrap support for Q751S5 as seed ortholog is 100%.
Bootstrap support for H2WN99 as seed ortholog is 100%.

Group of orthologs #476. Best score 241 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:105

Q74ZE2              	100.00%		H2W2X5              	100.00%
                    	       		H2WBZ8              	49.42%
Bootstrap support for Q74ZE2 as seed ortholog is 99%.
Bootstrap support for H2W2X5 as seed ortholog is 99%.

Group of orthologs #477. Best score 241 bits
Score difference with first non-orthologous sequence - A.gossypii:241 C.japonica:241

Q758T9              	100.00%		H2VTB5              	100.00%
Bootstrap support for Q758T9 as seed ortholog is 100%.
Bootstrap support for H2VTB5 as seed ortholog is 100%.

Group of orthologs #478. Best score 240 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:43

Q757N1              	100.00%		H2W926              	100.00%
                    	       		H2X1L0              	61.54%
                    	       		K7IIE8              	34.62%
Bootstrap support for Q757N1 as seed ortholog is 100%.
Bootstrap support for H2W926 as seed ortholog is 99%.

Group of orthologs #479. Best score 240 bits
Score difference with first non-orthologous sequence - A.gossypii:240 C.japonica:240

Q75B12              	100.00%		H2VW37              	100.00%
Bootstrap support for Q75B12 as seed ortholog is 100%.
Bootstrap support for H2VW37 as seed ortholog is 100%.

Group of orthologs #480. Best score 240 bits
Score difference with first non-orthologous sequence - A.gossypii:240 C.japonica:240

Q753M7              	100.00%		H2WG11              	100.00%
Bootstrap support for Q753M7 as seed ortholog is 100%.
Bootstrap support for H2WG11 as seed ortholog is 100%.

Group of orthologs #481. Best score 239 bits
Score difference with first non-orthologous sequence - A.gossypii:239 C.japonica:239

Q75A87              	100.00%		H2WFC7              	100.00%
Bootstrap support for Q75A87 as seed ortholog is 100%.
Bootstrap support for H2WFC7 as seed ortholog is 100%.

Group of orthologs #482. Best score 239 bits
Score difference with first non-orthologous sequence - A.gossypii:239 C.japonica:239

Q758D0              	100.00%		H2WLF5              	100.00%
Bootstrap support for Q758D0 as seed ortholog is 100%.
Bootstrap support for H2WLF5 as seed ortholog is 100%.

Group of orthologs #483. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:238 C.japonica:238

Q756R4              	100.00%		K7GXP1              	100.00%
                    	       		K7H0L2              	19.61%
                    	       		H2WHE3              	14.87%
                    	       		H2WKA5              	12.28%
                    	       		H2VSF1              	6.14%
                    	       		K7H6X2              	5.28%
Bootstrap support for Q756R4 as seed ortholog is 100%.
Bootstrap support for K7GXP1 as seed ortholog is 100%.

Group of orthologs #484. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.japonica:62

Q75BX7              	100.00%		H2WAY4              	100.00%
                    	       		H2W058              	13.95%
Bootstrap support for Q75BX7 as seed ortholog is 99%.
Bootstrap support for H2WAY4 as seed ortholog is 94%.

Group of orthologs #485. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:238 C.japonica:238

Q75CB2              	100.00%		H2VPT6              	100.00%
Bootstrap support for Q75CB2 as seed ortholog is 100%.
Bootstrap support for H2VPT6 as seed ortholog is 100%.

Group of orthologs #486. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:238 C.japonica:146

Q750Q9              	100.00%		H2W3E2              	100.00%
Bootstrap support for Q750Q9 as seed ortholog is 100%.
Bootstrap support for H2W3E2 as seed ortholog is 100%.

Group of orthologs #487. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:25 C.japonica:19

Q753W7              	100.00%		H2WJ66              	100.00%
Bootstrap support for Q753W7 as seed ortholog is 82%.
Bootstrap support for H2WJ66 as seed ortholog is 67%.
Alternative seed ortholog is H2VMU5 (19 bits away from this cluster)

Group of orthologs #488. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:238 C.japonica:136

Q74ZL1              	100.00%		H2XFI0              	100.00%
Bootstrap support for Q74ZL1 as seed ortholog is 100%.
Bootstrap support for H2XFI0 as seed ortholog is 100%.

Group of orthologs #489. Best score 238 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:238

Q75BY6              	100.00%		H2WNP9              	100.00%
Bootstrap support for Q75BY6 as seed ortholog is 99%.
Bootstrap support for H2WNP9 as seed ortholog is 100%.

Group of orthologs #490. Best score 237 bits
Score difference with first non-orthologous sequence - A.gossypii:237 C.japonica:167

Q752D9              	100.00%		H2WAC9              	100.00%
Bootstrap support for Q752D9 as seed ortholog is 100%.
Bootstrap support for H2WAC9 as seed ortholog is 99%.

Group of orthologs #491. Best score 237 bits
Score difference with first non-orthologous sequence - A.gossypii:237 C.japonica:237

Q756H0              	100.00%		H2WNT4              	100.00%
Bootstrap support for Q756H0 as seed ortholog is 100%.
Bootstrap support for H2WNT4 as seed ortholog is 100%.

Group of orthologs #492. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:236 C.japonica:236

Q75B74              	100.00%		K7GXM2              	100.00%
Bootstrap support for Q75B74 as seed ortholog is 100%.
Bootstrap support for K7GXM2 as seed ortholog is 100%.

Group of orthologs #493. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:236 C.japonica:236

Q74ZY3              	100.00%		K7HKR9              	100.00%
Bootstrap support for Q74ZY3 as seed ortholog is 100%.
Bootstrap support for K7HKR9 as seed ortholog is 100%.

Group of orthologs #494. Best score 234 bits
Score difference with first non-orthologous sequence - A.gossypii:234 C.japonica:234

Q757G4              	100.00%		H2W562              	100.00%
Bootstrap support for Q757G4 as seed ortholog is 100%.
Bootstrap support for H2W562 as seed ortholog is 100%.

Group of orthologs #495. Best score 234 bits
Score difference with first non-orthologous sequence - A.gossypii:234 C.japonica:234

Q751U6              	100.00%		H2WJ64              	100.00%
Bootstrap support for Q751U6 as seed ortholog is 100%.
Bootstrap support for H2WJ64 as seed ortholog is 100%.

Group of orthologs #496. Best score 234 bits
Score difference with first non-orthologous sequence - A.gossypii:234 C.japonica:234

Q750J7              	100.00%		H2WMA9              	100.00%
Bootstrap support for Q750J7 as seed ortholog is 100%.
Bootstrap support for H2WMA9 as seed ortholog is 100%.

Group of orthologs #497. Best score 234 bits
Score difference with first non-orthologous sequence - A.gossypii:234 C.japonica:234

Q75BC1              	100.00%		H2XD98              	100.00%
Bootstrap support for Q75BC1 as seed ortholog is 100%.
Bootstrap support for H2XD98 as seed ortholog is 100%.

Group of orthologs #498. Best score 233 bits
Score difference with first non-orthologous sequence - A.gossypii:233 C.japonica:233

Q759C8              	100.00%		H2VIM0              	100.00%
Bootstrap support for Q759C8 as seed ortholog is 100%.
Bootstrap support for H2VIM0 as seed ortholog is 100%.

Group of orthologs #499. Best score 233 bits
Score difference with first non-orthologous sequence - A.gossypii:233 C.japonica:233

Q755P9              	100.00%		H2VXF9              	100.00%
Bootstrap support for Q755P9 as seed ortholog is 100%.
Bootstrap support for H2VXF9 as seed ortholog is 100%.

Group of orthologs #500. Best score 233 bits
Score difference with first non-orthologous sequence - A.gossypii:233 C.japonica:233

Q74Z31              	100.00%		H2WF49              	100.00%
Bootstrap support for Q74Z31 as seed ortholog is 100%.
Bootstrap support for H2WF49 as seed ortholog is 100%.

Group of orthologs #501. Best score 233 bits
Score difference with first non-orthologous sequence - A.gossypii:233 C.japonica:233

Q759D9              	100.00%		H2WBR7              	100.00%
Bootstrap support for Q759D9 as seed ortholog is 100%.
Bootstrap support for H2WBR7 as seed ortholog is 100%.

Group of orthologs #502. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.japonica:178

Q755R8              	100.00%		H2VS31              	100.00%
                    	       		H2WPD8              	41.67%
Bootstrap support for Q755R8 as seed ortholog is 99%.
Bootstrap support for H2VS31 as seed ortholog is 100%.

Group of orthologs #503. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.japonica:232

Q75DR9              	100.00%		H2VPK8              	100.00%
Bootstrap support for Q75DR9 as seed ortholog is 100%.
Bootstrap support for H2VPK8 as seed ortholog is 100%.

Group of orthologs #504. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.japonica:232

Q75EB1              	100.00%		H2VRR5              	100.00%
Bootstrap support for Q75EB1 as seed ortholog is 100%.
Bootstrap support for H2VRR5 as seed ortholog is 100%.

Group of orthologs #505. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:59

Q75CA9              	100.00%		H2W1B3              	100.00%
Bootstrap support for Q75CA9 as seed ortholog is 100%.
Bootstrap support for H2W1B3 as seed ortholog is 99%.

Group of orthologs #506. Best score 232 bits
Score difference with first non-orthologous sequence - A.gossypii:232 C.japonica:232

Q758X9              	100.00%		H2WQG7              	100.00%
Bootstrap support for Q758X9 as seed ortholog is 100%.
Bootstrap support for H2WQG7 as seed ortholog is 100%.

Group of orthologs #507. Best score 231 bits
Score difference with first non-orthologous sequence - A.gossypii:231 C.japonica:59

Q750W6              	100.00%		H2WK98              	100.00%
Q756U6              	100.00%		H2VYN0              	100.00%
                    	       		H2W750              	33.86%
Bootstrap support for Q750W6 as seed ortholog is 100%.
Bootstrap support for Q756U6 as seed ortholog is 100%.
Bootstrap support for H2WK98 as seed ortholog is 99%.
Bootstrap support for H2VYN0 as seed ortholog is 96%.

Group of orthologs #508. Best score 231 bits
Score difference with first non-orthologous sequence - A.gossypii:231 C.japonica:231

Q759R3              	100.00%		K7H4J1              	100.00%
Bootstrap support for Q759R3 as seed ortholog is 100%.
Bootstrap support for K7H4J1 as seed ortholog is 100%.

Group of orthologs #509. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:154 C.japonica:49

Q751R9              	100.00%		H2WDK0              	100.00%
Bootstrap support for Q751R9 as seed ortholog is 99%.
Bootstrap support for H2WDK0 as seed ortholog is 88%.

Group of orthologs #510. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:230 C.japonica:230

Q75F07              	100.00%		H2W6N3              	100.00%
Bootstrap support for Q75F07 as seed ortholog is 100%.
Bootstrap support for H2W6N3 as seed ortholog is 100%.

Group of orthologs #511. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.japonica:230

Q75EI1              	100.00%		K7GZH5              	100.00%
Bootstrap support for Q75EI1 as seed ortholog is 99%.
Bootstrap support for K7GZH5 as seed ortholog is 100%.

Group of orthologs #512. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.japonica:62

Q75ES0              	100.00%		K7H0I7              	100.00%
Bootstrap support for Q75ES0 as seed ortholog is 84%.
Bootstrap support for K7H0I7 as seed ortholog is 96%.

Group of orthologs #513. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:229 C.japonica:229

Q75EE7              	100.00%		H2VUX4              	100.00%
Bootstrap support for Q75EE7 as seed ortholog is 100%.
Bootstrap support for H2VUX4 as seed ortholog is 100%.

Group of orthologs #514. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.japonica:18

Q751V1              	100.00%		H2XB33              	100.00%
Bootstrap support for Q751V1 as seed ortholog is 100%.
Bootstrap support for H2XB33 as seed ortholog is 73%.
Alternative seed ortholog is H2XGW2 (18 bits away from this cluster)

Group of orthologs #515. Best score 229 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:81

Q75BN2              	100.00%		K7H5U1              	100.00%
Bootstrap support for Q75BN2 as seed ortholog is 99%.
Bootstrap support for K7H5U1 as seed ortholog is 97%.

Group of orthologs #516. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.japonica:38

Q756A9              	100.00%		H2WFV8              	100.00%
                    	       		H2WG97              	100.00%
                    	       		H2WL22              	88.10%
                    	       		K7GZV7              	37.12%
                    	       		H2VIX0              	23.14%
Bootstrap support for Q756A9 as seed ortholog is 100%.
Bootstrap support for H2WFV8 as seed ortholog is 77%.
Bootstrap support for H2WG97 as seed ortholog is 77%.

Group of orthologs #517. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.japonica:227

Q75EL3              	100.00%		H2WKV5              	100.00%
                    	       		K7IAT5              	45.24%
Bootstrap support for Q75EL3 as seed ortholog is 100%.
Bootstrap support for H2WKV5 as seed ortholog is 100%.

Group of orthologs #518. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.japonica:227

Q753Q1              	100.00%		H2VM11              	100.00%
Bootstrap support for Q753Q1 as seed ortholog is 100%.
Bootstrap support for H2VM11 as seed ortholog is 100%.

Group of orthologs #519. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:227 C.japonica:227

Q75EH1              	100.00%		H2WAE6              	100.00%
Bootstrap support for Q75EH1 as seed ortholog is 100%.
Bootstrap support for H2WAE6 as seed ortholog is 100%.

Group of orthologs #520. Best score 227 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.japonica:108

Q75EB8              	100.00%		H2WHH9              	100.00%
Bootstrap support for Q75EB8 as seed ortholog is 100%.
Bootstrap support for H2WHH9 as seed ortholog is 99%.

Group of orthologs #521. Best score 226 bits
Score difference with first non-orthologous sequence - A.gossypii:226 C.japonica:226

Q757J3              	100.00%		H2VYI5              	100.00%
Bootstrap support for Q757J3 as seed ortholog is 100%.
Bootstrap support for H2VYI5 as seed ortholog is 100%.

Group of orthologs #522. Best score 226 bits
Score difference with first non-orthologous sequence - A.gossypii:226 C.japonica:226

Q75E53              	100.00%		K7IAR7              	100.00%
Bootstrap support for Q75E53 as seed ortholog is 100%.
Bootstrap support for K7IAR7 as seed ortholog is 100%.

Group of orthologs #523. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.japonica:83

Q751V7              	100.00%		H2VM31              	100.00%
                    	       		H2VMM7              	30.39%
                    	       		K7I937              	6.45%
Bootstrap support for Q751V7 as seed ortholog is 100%.
Bootstrap support for H2VM31 as seed ortholog is 98%.

Group of orthologs #524. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.japonica:225

Q751A3              	100.00%		H2VP99              	100.00%
Bootstrap support for Q751A3 as seed ortholog is 100%.
Bootstrap support for H2VP99 as seed ortholog is 100%.

Group of orthologs #525. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:225

Q759E2              	100.00%		H2VWR5              	100.00%
Bootstrap support for Q759E2 as seed ortholog is 82%.
Bootstrap support for H2VWR5 as seed ortholog is 100%.

Group of orthologs #526. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.japonica:225

Q751N3              	100.00%		H2W911              	100.00%
Bootstrap support for Q751N3 as seed ortholog is 100%.
Bootstrap support for H2W911 as seed ortholog is 100%.

Group of orthologs #527. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.japonica:148

Q750S7              	100.00%		H2WQE8              	100.00%
Bootstrap support for Q750S7 as seed ortholog is 91%.
Bootstrap support for H2WQE8 as seed ortholog is 99%.

Group of orthologs #528. Best score 225 bits
Score difference with first non-orthologous sequence - A.gossypii:225 C.japonica:225

Q75B86              	100.00%		K7GYL1              	100.00%
Bootstrap support for Q75B86 as seed ortholog is 100%.
Bootstrap support for K7GYL1 as seed ortholog is 100%.

Group of orthologs #529. Best score 224 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.japonica:129

Q755D7              	100.00%		H2W069              	100.00%
                    	       		H2WG89              	70.00%
Bootstrap support for Q755D7 as seed ortholog is 100%.
Bootstrap support for H2W069 as seed ortholog is 100%.

Group of orthologs #530. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.japonica:170

Q75BS2              	100.00%		H2VN72              	100.00%
                    	       		K7I0A7              	51.90%
Bootstrap support for Q75BS2 as seed ortholog is 99%.
Bootstrap support for H2VN72 as seed ortholog is 100%.

Group of orthologs #531. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:223 C.japonica:223

Q758E0              	100.00%		H2W6M8              	100.00%
Bootstrap support for Q758E0 as seed ortholog is 100%.
Bootstrap support for H2W6M8 as seed ortholog is 100%.

Group of orthologs #532. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.japonica:68

Q753V5              	100.00%		K7GZM0              	100.00%
Bootstrap support for Q753V5 as seed ortholog is 76%.
Bootstrap support for K7GZM0 as seed ortholog is 90%.

Group of orthologs #533. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:222 C.japonica:222

Q75BP5              	100.00%		K7I784              	100.00%
Q74ZU7              	15.46%		K7HKH4              	84.28%
Bootstrap support for Q75BP5 as seed ortholog is 100%.
Bootstrap support for K7I784 as seed ortholog is 100%.

Group of orthologs #534. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:222 C.japonica:222

Q756S5              	100.00%		H2VG73              	100.00%
Bootstrap support for Q756S5 as seed ortholog is 100%.
Bootstrap support for H2VG73 as seed ortholog is 100%.

Group of orthologs #535. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:222 C.japonica:222

Q75F99              	100.00%		H2VU11              	100.00%
Bootstrap support for Q75F99 as seed ortholog is 100%.
Bootstrap support for H2VU11 as seed ortholog is 100%.

Group of orthologs #536. Best score 222 bits
Score difference with first non-orthologous sequence - A.gossypii:222 C.japonica:222

Q753N8              	100.00%		H2WFG9              	100.00%
Bootstrap support for Q753N8 as seed ortholog is 100%.
Bootstrap support for H2WFG9 as seed ortholog is 100%.

Group of orthologs #537. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.japonica:221

Q75EF1              	100.00%		H2VTL8              	100.00%
                    	       		K7I6N9              	39.86%
Bootstrap support for Q75EF1 as seed ortholog is 100%.
Bootstrap support for H2VTL8 as seed ortholog is 100%.

Group of orthologs #538. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.japonica:221

Q754Q0              	100.00%		H2VYW5              	100.00%
Bootstrap support for Q754Q0 as seed ortholog is 100%.
Bootstrap support for H2VYW5 as seed ortholog is 100%.

Group of orthologs #539. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.japonica:221

Q755M2              	100.00%		H2WIA5              	100.00%
Bootstrap support for Q755M2 as seed ortholog is 100%.
Bootstrap support for H2WIA5 as seed ortholog is 100%.

Group of orthologs #540. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 C.japonica:82

Q75B78              	100.00%		H2X2E4              	100.00%
Bootstrap support for Q75B78 as seed ortholog is 100%.
Bootstrap support for H2X2E4 as seed ortholog is 93%.

Group of orthologs #541. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.japonica:220

Q75D84              	100.00%		K7HC26              	100.00%
                    	       		H2WAD6              	36.38%
Bootstrap support for Q75D84 as seed ortholog is 100%.
Bootstrap support for K7HC26 as seed ortholog is 100%.

Group of orthologs #542. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.japonica:220

Q751P4              	100.00%		H2VJV9              	100.00%
Bootstrap support for Q751P4 as seed ortholog is 100%.
Bootstrap support for H2VJV9 as seed ortholog is 100%.

Group of orthologs #543. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.japonica:220

Q753A2              	100.00%		H2WBT1              	100.00%
Bootstrap support for Q753A2 as seed ortholog is 100%.
Bootstrap support for H2WBT1 as seed ortholog is 100%.

Group of orthologs #544. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:220 C.japonica:220

Q752Z8              	100.00%		H2WDM2              	100.00%
Bootstrap support for Q752Z8 as seed ortholog is 100%.
Bootstrap support for H2WDM2 as seed ortholog is 100%.

Group of orthologs #545. Best score 220 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:220

Q75C48              	100.00%		H2W7D6              	100.00%
Bootstrap support for Q75C48 as seed ortholog is 99%.
Bootstrap support for H2W7D6 as seed ortholog is 100%.

Group of orthologs #546. Best score 219 bits
Score difference with first non-orthologous sequence - A.gossypii:219 C.japonica:34

Q750W7              	100.00%		H2VXN8              	100.00%
                    	       		H2XAT6              	34.38%
                    	       		K7HIU3              	34.00%
                    	       		H2WAX5              	29.62%
                    	       		K7HHK5              	22.54%
                    	       		K7H6H4              	14.46%
                    	       		H2VX42              	11.54%
                    	       		H2WIM5              	11.08%
                    	       		H2WFQ2              	9.69%
                    	       		H2VM07              	7.38%
                    	       		K7H769              	6.62%
                    	       		K7I3Q4              	6.15%
                    	       		K7H1Q6              	5.69%
                    	       		K7HNG8              	5.62%
                    	       		K7HYR8              	5.62%
                    	       		K7II94              	5.00%
                    	       		K7HLC5              	5.00%
Bootstrap support for Q750W7 as seed ortholog is 100%.
Bootstrap support for H2VXN8 as seed ortholog is 81%.

Group of orthologs #547. Best score 219 bits
Score difference with first non-orthologous sequence - A.gossypii:219 C.japonica:138

Q751M0              	100.00%		H2W6H1              	100.00%
                    	       		H2W344              	44.93%
Bootstrap support for Q751M0 as seed ortholog is 100%.
Bootstrap support for H2W6H1 as seed ortholog is 100%.

Group of orthologs #548. Best score 219 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:25

Q74ZI1              	100.00%		H2VV44              	100.00%
Bootstrap support for Q74ZI1 as seed ortholog is 98%.
Bootstrap support for H2VV44 as seed ortholog is 84%.

Group of orthologs #549. Best score 219 bits
Score difference with first non-orthologous sequence - A.gossypii:40 C.japonica:5

Q74ZE6              	100.00%		H2W172              	100.00%
Bootstrap support for Q74ZE6 as seed ortholog is 86%.
Bootstrap support for H2W172 as seed ortholog is 56%.
Alternative seed ortholog is H2VNX3 (5 bits away from this cluster)

Group of orthologs #550. Best score 218 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.japonica:132

Q74ZS7              	100.00%		H2VZX6              	100.00%
Bootstrap support for Q74ZS7 as seed ortholog is 100%.
Bootstrap support for H2VZX6 as seed ortholog is 100%.

Group of orthologs #551. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.japonica:217

Q75BF3              	100.00%		H2VYL7              	100.00%
Q75DP5              	9.75%		
Bootstrap support for Q75BF3 as seed ortholog is 100%.
Bootstrap support for H2VYL7 as seed ortholog is 100%.

Group of orthologs #552. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.japonica:217

Q750I1              	100.00%		H2VMS8              	100.00%
Bootstrap support for Q750I1 as seed ortholog is 100%.
Bootstrap support for H2VMS8 as seed ortholog is 100%.

Group of orthologs #553. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 C.japonica:217

Q75EY8              	100.00%		H2W302              	100.00%
Bootstrap support for Q75EY8 as seed ortholog is 100%.
Bootstrap support for H2W302 as seed ortholog is 100%.

Group of orthologs #554. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:13

Q751F5              	100.00%		H2VI99              	100.00%
Bootstrap support for Q751F5 as seed ortholog is 97%.
Bootstrap support for H2VI99 as seed ortholog is 72%.
Alternative seed ortholog is H2W1M6 (13 bits away from this cluster)

Group of orthologs #555. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.japonica:216

Q75CL1              	100.00%		H2VU13              	100.00%
Bootstrap support for Q75CL1 as seed ortholog is 100%.
Bootstrap support for H2VU13 as seed ortholog is 100%.

Group of orthologs #556. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.japonica:216

Q754X1              	100.00%		H2W843              	100.00%
Bootstrap support for Q754X1 as seed ortholog is 100%.
Bootstrap support for H2W843 as seed ortholog is 100%.

Group of orthologs #557. Best score 216 bits
Score difference with first non-orthologous sequence - A.gossypii:216 C.japonica:216

Q75AM2              	100.00%		H2WLV9              	100.00%
Bootstrap support for Q75AM2 as seed ortholog is 100%.
Bootstrap support for H2WLV9 as seed ortholog is 100%.

Group of orthologs #558. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:148

Q750E3              	100.00%		H2WBH3              	100.00%
                    	       		H2VW33              	39.91%
                    	       		H2VP18              	30.04%
Bootstrap support for Q750E3 as seed ortholog is 94%.
Bootstrap support for H2WBH3 as seed ortholog is 99%.

Group of orthologs #559. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.japonica:67

Q75C92              	100.00%		H2VL72              	100.00%
                    	       		H2VYJ9              	100.00%
Bootstrap support for Q75C92 as seed ortholog is 100%.
Bootstrap support for H2VL72 as seed ortholog is 92%.
Bootstrap support for H2VYJ9 as seed ortholog is 88%.

Group of orthologs #560. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.japonica:215

Q751D8              	100.00%		H2VWX7              	100.00%
Bootstrap support for Q751D8 as seed ortholog is 100%.
Bootstrap support for H2VWX7 as seed ortholog is 100%.

Group of orthologs #561. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.japonica:39

Q756N0              	100.00%		H2W3D6              	100.00%
Bootstrap support for Q756N0 as seed ortholog is 100%.
Bootstrap support for H2W3D6 as seed ortholog is 75%.

Group of orthologs #562. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.japonica:215

Q75D59              	100.00%		H2W9X5              	100.00%
Bootstrap support for Q75D59 as seed ortholog is 100%.
Bootstrap support for H2W9X5 as seed ortholog is 100%.

Group of orthologs #563. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:143

Q75BL1              	100.00%		H2WPG4              	100.00%
Bootstrap support for Q75BL1 as seed ortholog is 99%.
Bootstrap support for H2WPG4 as seed ortholog is 99%.

Group of orthologs #564. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:215 C.japonica:215

Q751F3              	100.00%		K7GUG3              	100.00%
Bootstrap support for Q751F3 as seed ortholog is 100%.
Bootstrap support for K7GUG3 as seed ortholog is 100%.

Group of orthologs #565. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 C.japonica:213

Q75ER3              	100.00%		H2WN60              	100.00%
Q75EP7              	11.00%		
Bootstrap support for Q75ER3 as seed ortholog is 100%.
Bootstrap support for H2WN60 as seed ortholog is 100%.

Group of orthologs #566. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:213

Q752C7              	100.00%		H2WLI7              	100.00%
Bootstrap support for Q752C7 as seed ortholog is 99%.
Bootstrap support for H2WLI7 as seed ortholog is 100%.

Group of orthologs #567. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 C.japonica:213

Q75C82              	100.00%		K7GZ64              	100.00%
Bootstrap support for Q75C82 as seed ortholog is 100%.
Bootstrap support for K7GZ64 as seed ortholog is 100%.

Group of orthologs #568. Best score 212 bits
Score difference with first non-orthologous sequence - A.gossypii:212 C.japonica:141

Q758V7              	100.00%		H2VK90              	100.00%
Bootstrap support for Q758V7 as seed ortholog is 100%.
Bootstrap support for H2VK90 as seed ortholog is 99%.

Group of orthologs #569. Best score 211 bits
Score difference with first non-orthologous sequence - A.gossypii:211 C.japonica:211

Q75B05              	100.00%		H2W5A4              	100.00%
                    	       		K7HNX5              	99.74%
Bootstrap support for Q75B05 as seed ortholog is 100%.
Bootstrap support for H2W5A4 as seed ortholog is 100%.

Group of orthologs #570. Best score 211 bits
Score difference with first non-orthologous sequence - A.gossypii:211 C.japonica:211

Q758H5              	100.00%		K7H4N7              	100.00%
Bootstrap support for Q758H5 as seed ortholog is 100%.
Bootstrap support for K7H4N7 as seed ortholog is 100%.

Group of orthologs #571. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.japonica:210

Q75F47              	100.00%		H2WIR4              	100.00%
                    	       		H2VM04              	15.64%
                    	       		H2W0U8              	5.86%
Bootstrap support for Q75F47 as seed ortholog is 96%.
Bootstrap support for H2WIR4 as seed ortholog is 100%.

Group of orthologs #572. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.japonica:94

Q756F0              	100.00%		H2W4G6              	100.00%
                    	       		K7H8D9              	7.48%
Bootstrap support for Q756F0 as seed ortholog is 100%.
Bootstrap support for H2W4G6 as seed ortholog is 100%.

Group of orthologs #573. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 C.japonica:210

Q75AX9              	100.00%		K7GVB7              	100.00%
Bootstrap support for Q75AX9 as seed ortholog is 100%.
Bootstrap support for K7GVB7 as seed ortholog is 100%.

Group of orthologs #574. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 C.japonica:209

Q752J5              	100.00%		H2WR56              	100.00%
Bootstrap support for Q752J5 as seed ortholog is 100%.
Bootstrap support for H2WR56 as seed ortholog is 100%.

Group of orthologs #575. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:24 C.japonica:88

Q754V5              	100.00%		K7GW20              	100.00%
                    	       		H2VP62              	32.99%
Bootstrap support for Q754V5 as seed ortholog is 70%.
Alternative seed ortholog is Q755L9 (24 bits away from this cluster)
Bootstrap support for K7GW20 as seed ortholog is 97%.

Group of orthologs #576. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.japonica:208

Q751V5              	100.00%		H2VP91              	100.00%
Bootstrap support for Q751V5 as seed ortholog is 100%.
Bootstrap support for H2VP91 as seed ortholog is 100%.

Group of orthologs #577. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.japonica:109

Q758Y8              	100.00%		H2W0G9              	100.00%
Bootstrap support for Q758Y8 as seed ortholog is 99%.
Bootstrap support for H2W0G9 as seed ortholog is 99%.

Group of orthologs #578. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:208 C.japonica:208

Q75C46              	100.00%		H2X0H9              	100.00%
Bootstrap support for Q75C46 as seed ortholog is 100%.
Bootstrap support for H2X0H9 as seed ortholog is 100%.

Group of orthologs #579. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:57

Q75EY4              	100.00%		H2VHR4              	100.00%
                    	       		K7IB92              	53.00%
Bootstrap support for Q75EY4 as seed ortholog is 99%.
Bootstrap support for H2VHR4 as seed ortholog is 98%.

Group of orthologs #580. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.japonica:207

Q75C44              	100.00%		H2VYM4              	100.00%
Q75C14              	13.27%		
Bootstrap support for Q75C44 as seed ortholog is 100%.
Bootstrap support for H2VYM4 as seed ortholog is 100%.

Group of orthologs #581. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.japonica:47

Q74Z34              	100.00%		H2VNU9              	100.00%
Bootstrap support for Q74Z34 as seed ortholog is 100%.
Bootstrap support for H2VNU9 as seed ortholog is 94%.

Group of orthologs #582. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.japonica:30

Q75AB5              	100.00%		H2VYY9              	100.00%
Bootstrap support for Q75AB5 as seed ortholog is 100%.
Bootstrap support for H2VYY9 as seed ortholog is 78%.

Group of orthologs #583. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:207 C.japonica:207

Q75BY4              	100.00%		H2WH96              	100.00%
Bootstrap support for Q75BY4 as seed ortholog is 100%.
Bootstrap support for H2WH96 as seed ortholog is 100%.

Group of orthologs #584. Best score 206 bits
Score difference with first non-orthologous sequence - A.gossypii:206 C.japonica:97

Q758C3              	100.00%		H2WJL5              	100.00%
                    	       		K7HRP7              	25.00%
                    	       		H2VST4              	23.40%
Bootstrap support for Q758C3 as seed ortholog is 100%.
Bootstrap support for H2WJL5 as seed ortholog is 99%.

Group of orthologs #585. Best score 206 bits
Score difference with first non-orthologous sequence - A.gossypii:206 C.japonica:206

Q74Z09              	100.00%		H2WCS4              	100.00%
Bootstrap support for Q74Z09 as seed ortholog is 100%.
Bootstrap support for H2WCS4 as seed ortholog is 100%.

Group of orthologs #586. Best score 206 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:64

Q75ET2              	100.00%		H2VW69              	100.00%
Bootstrap support for Q75ET2 as seed ortholog is 99%.
Bootstrap support for H2VW69 as seed ortholog is 20%.
Alternative seed ortholog is H2W2T3 (64 bits away from this cluster)

Group of orthologs #587. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:205 C.japonica:143

Q757A9              	100.00%		H2WGK2              	100.00%
                    	       		K7IKS1              	97.59%
Bootstrap support for Q757A9 as seed ortholog is 100%.
Bootstrap support for H2WGK2 as seed ortholog is 99%.

Group of orthologs #588. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:205 C.japonica:149

Q757C0              	100.00%		K7GU56              	100.00%
                    	       		H2WLH0              	21.52%
Bootstrap support for Q757C0 as seed ortholog is 100%.
Bootstrap support for K7GU56 as seed ortholog is 100%.

Group of orthologs #589. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:133

O60029              	100.00%		H2VZE1              	100.00%
Bootstrap support for O60029 as seed ortholog is 99%.
Bootstrap support for H2VZE1 as seed ortholog is 99%.

Group of orthologs #590. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:82

Q750E7              	100.00%		H2W951              	100.00%
Bootstrap support for Q750E7 as seed ortholog is 97%.
Bootstrap support for H2W951 as seed ortholog is 97%.

Group of orthologs #591. Best score 205 bits
Score difference with first non-orthologous sequence - A.gossypii:205 C.japonica:205

Q75EG2              	100.00%		H2VVA6              	100.00%
Bootstrap support for Q75EG2 as seed ortholog is 100%.
Bootstrap support for H2VVA6 as seed ortholog is 100%.

Group of orthologs #592. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:11

Q75EF7              	100.00%		H2VMY2              	100.00%
                    	       		H2WKT5              	20.92%
                    	       		H2VLN6              	7.63%
                    	       		H2VMC7              	7.63%
Bootstrap support for Q75EF7 as seed ortholog is 100%.
Bootstrap support for H2VMY2 as seed ortholog is 57%.
Alternative seed ortholog is H2W9P4 (11 bits away from this cluster)

Group of orthologs #593. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:204

Q75EC1              	100.00%		H2W187              	100.00%
                    	       		H2WIA0              	57.29%
Bootstrap support for Q75EC1 as seed ortholog is 100%.
Bootstrap support for H2W187 as seed ortholog is 100%.

Group of orthologs #594. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:204

Q754F1              	100.00%		H2VSI0              	100.00%
Bootstrap support for Q754F1 as seed ortholog is 100%.
Bootstrap support for H2VSI0 as seed ortholog is 100%.

Group of orthologs #595. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:204

Q75AS7              	100.00%		H2WDC9              	100.00%
Bootstrap support for Q75AS7 as seed ortholog is 100%.
Bootstrap support for H2WDC9 as seed ortholog is 100%.

Group of orthologs #596. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:204

Q75AB0              	100.00%		H2WEG6              	100.00%
Bootstrap support for Q75AB0 as seed ortholog is 100%.
Bootstrap support for H2WEG6 as seed ortholog is 100%.

Group of orthologs #597. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:204

Q75DQ2              	100.00%		H2WEP0              	100.00%
Bootstrap support for Q75DQ2 as seed ortholog is 100%.
Bootstrap support for H2WEP0 as seed ortholog is 100%.

Group of orthologs #598. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:204 C.japonica:204

Q751Q9              	100.00%		K7I2R9              	100.00%
Bootstrap support for Q751Q9 as seed ortholog is 100%.
Bootstrap support for K7I2R9 as seed ortholog is 100%.

Group of orthologs #599. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q75BE2              	100.00%		H2VLG4              	100.00%
                    	       		H2W039              	44.87%
Bootstrap support for Q75BE2 as seed ortholog is 100%.
Bootstrap support for H2VLG4 as seed ortholog is 100%.

Group of orthologs #600. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q752U1              	100.00%		H2VSG5              	100.00%
Bootstrap support for Q752U1 as seed ortholog is 100%.
Bootstrap support for H2VSG5 as seed ortholog is 100%.

Group of orthologs #601. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q751Y9              	100.00%		H2VWW4              	100.00%
Bootstrap support for Q751Y9 as seed ortholog is 100%.
Bootstrap support for H2VWW4 as seed ortholog is 100%.

Group of orthologs #602. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q758X7              	100.00%		H2W4L4              	100.00%
Bootstrap support for Q758X7 as seed ortholog is 100%.
Bootstrap support for H2W4L4 as seed ortholog is 100%.

Group of orthologs #603. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q759L8              	100.00%		H2W673              	100.00%
Bootstrap support for Q759L8 as seed ortholog is 100%.
Bootstrap support for H2W673 as seed ortholog is 100%.

Group of orthologs #604. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q75EV8              	100.00%		K7H4P9              	100.00%
Bootstrap support for Q75EV8 as seed ortholog is 100%.
Bootstrap support for K7H4P9 as seed ortholog is 100%.

Group of orthologs #605. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:203 C.japonica:203

Q751J4              	100.00%		K7HW53              	100.00%
Bootstrap support for Q751J4 as seed ortholog is 100%.
Bootstrap support for K7HW53 as seed ortholog is 100%.

Group of orthologs #606. Best score 202 bits
Score difference with first non-orthologous sequence - A.gossypii:202 C.japonica:202

Q75A47              	100.00%		H2VPT9              	100.00%
Bootstrap support for Q75A47 as seed ortholog is 100%.
Bootstrap support for H2VPT9 as seed ortholog is 100%.

Group of orthologs #607. Best score 202 bits
Score difference with first non-orthologous sequence - A.gossypii:202 C.japonica:130

Q757W4              	100.00%		H2VUI5              	100.00%
Bootstrap support for Q757W4 as seed ortholog is 100%.
Bootstrap support for H2VUI5 as seed ortholog is 100%.

Group of orthologs #608. Best score 202 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:85

Q75CE7              	100.00%		H2WG88              	100.00%
Bootstrap support for Q75CE7 as seed ortholog is 97%.
Bootstrap support for H2WG88 as seed ortholog is 99%.

Group of orthologs #609. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:13 C.japonica:52

Q75CM6              	100.00%		H2VNW1              	100.00%
                    	       		H2WLD4              	24.34%
                    	       		H2WQR5              	9.07%
Bootstrap support for Q75CM6 as seed ortholog is 66%.
Alternative seed ortholog is Q755W7 (13 bits away from this cluster)
Bootstrap support for H2VNW1 as seed ortholog is 91%.

Group of orthologs #610. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.japonica:201

Q756A0              	100.00%		H2VTS5              	100.00%
Bootstrap support for Q756A0 as seed ortholog is 100%.
Bootstrap support for H2VTS5 as seed ortholog is 100%.

Group of orthologs #611. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.japonica:201

Q75CH3              	100.00%		H2VY23              	100.00%
Bootstrap support for Q75CH3 as seed ortholog is 99%.
Bootstrap support for H2VY23 as seed ortholog is 100%.

Group of orthologs #612. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 C.japonica:201

Q755Y9              	100.00%		K7H3Z0              	100.00%
Bootstrap support for Q755Y9 as seed ortholog is 100%.
Bootstrap support for K7H3Z0 as seed ortholog is 100%.

Group of orthologs #613. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:200 C.japonica:200

Q754G6              	100.00%		H2VZP4              	100.00%
Bootstrap support for Q754G6 as seed ortholog is 100%.
Bootstrap support for H2VZP4 as seed ortholog is 100%.

Group of orthologs #614. Best score 200 bits
Score difference with first non-orthologous sequence - A.gossypii:30 C.japonica:200

Q75C30              	100.00%		H2VYU0              	100.00%
Bootstrap support for Q75C30 as seed ortholog is 81%.
Bootstrap support for H2VYU0 as seed ortholog is 100%.

Group of orthologs #615. Best score 199 bits
Score difference with first non-orthologous sequence - A.gossypii:199 C.japonica:199

Q75CP8              	100.00%		K7H4I0              	100.00%
                    	       		K7HFS6              	29.10%
Bootstrap support for Q75CP8 as seed ortholog is 100%.
Bootstrap support for K7H4I0 as seed ortholog is 100%.

Group of orthologs #616. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.japonica:198

Q755I4              	100.00%		H2VPK6              	100.00%
Bootstrap support for Q755I4 as seed ortholog is 100%.
Bootstrap support for H2VPK6 as seed ortholog is 100%.

Group of orthologs #617. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.japonica:198

Q75AM4              	100.00%		H2VQ05              	100.00%
Bootstrap support for Q75AM4 as seed ortholog is 100%.
Bootstrap support for H2VQ05 as seed ortholog is 100%.

Group of orthologs #618. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.japonica:198

Q75E64              	100.00%		H2W7F0              	100.00%
Bootstrap support for Q75E64 as seed ortholog is 100%.
Bootstrap support for H2W7F0 as seed ortholog is 100%.

Group of orthologs #619. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.japonica:152

Q75DD1              	100.00%		H2W8M4              	100.00%
Bootstrap support for Q75DD1 as seed ortholog is 100%.
Bootstrap support for H2W8M4 as seed ortholog is 100%.

Group of orthologs #620. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 C.japonica:198

Q758L7              	100.00%		H2WJZ3              	100.00%
Bootstrap support for Q758L7 as seed ortholog is 100%.
Bootstrap support for H2WJZ3 as seed ortholog is 100%.

Group of orthologs #621. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.japonica:196

Q75B81              	100.00%		H2VP63              	100.00%
Bootstrap support for Q75B81 as seed ortholog is 100%.
Bootstrap support for H2VP63 as seed ortholog is 100%.

Group of orthologs #622. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 C.japonica:196

Q75A48              	100.00%		H2WLN7              	100.00%
Bootstrap support for Q75A48 as seed ortholog is 100%.
Bootstrap support for H2WLN7 as seed ortholog is 100%.

Group of orthologs #623. Best score 195 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.japonica:59

Q757L4              	100.00%		H2WI54              	100.00%
Q74ZL4              	98.31%		H2VIM6              	92.45%
                    	       		K7I048              	90.57%
                    	       		K7IH80              	52.83%
                    	       		K7I254              	35.85%
Bootstrap support for Q757L4 as seed ortholog is 100%.
Bootstrap support for H2WI54 as seed ortholog is 99%.

Group of orthologs #624. Best score 195 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.japonica:195

Q75BY0              	100.00%		H2VRN7              	100.00%
                    	       		H2X2L6              	37.33%
                    	       		H2WNY3              	16.38%
                    	       		H2X0I2              	14.67%
                    	       		K7HJR8              	12.38%
Bootstrap support for Q75BY0 as seed ortholog is 100%.
Bootstrap support for H2VRN7 as seed ortholog is 100%.

Group of orthologs #625. Best score 195 bits
Score difference with first non-orthologous sequence - A.gossypii:195 C.japonica:195

Q75CE5              	100.00%		H2X728              	100.00%
Bootstrap support for Q75CE5 as seed ortholog is 100%.
Bootstrap support for H2X728 as seed ortholog is 100%.

Group of orthologs #626. Best score 194 bits
Score difference with first non-orthologous sequence - A.gossypii:194 C.japonica:194

Q757D8              	100.00%		H2VKZ0              	100.00%
Bootstrap support for Q757D8 as seed ortholog is 100%.
Bootstrap support for H2VKZ0 as seed ortholog is 100%.

Group of orthologs #627. Best score 194 bits
Score difference with first non-orthologous sequence - A.gossypii:194 C.japonica:194

Q75D31              	100.00%		K7H6A7              	100.00%
Bootstrap support for Q75D31 as seed ortholog is 100%.
Bootstrap support for K7H6A7 as seed ortholog is 100%.

Group of orthologs #628. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.japonica:123

Q755U9              	100.00%		H2WF02              	100.00%
                    	       		H2VRQ1              	32.95%
Bootstrap support for Q755U9 as seed ortholog is 100%.
Bootstrap support for H2WF02 as seed ortholog is 99%.

Group of orthologs #629. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:193

Q759N3              	100.00%		H2VIK5              	100.00%
Bootstrap support for Q759N3 as seed ortholog is 99%.
Bootstrap support for H2VIK5 as seed ortholog is 100%.

Group of orthologs #630. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.japonica:193

Q75CC4              	100.00%		H2VJH5              	100.00%
Bootstrap support for Q75CC4 as seed ortholog is 100%.
Bootstrap support for H2VJH5 as seed ortholog is 100%.

Group of orthologs #631. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.japonica:193

Q753H0              	100.00%		H2WDT9              	100.00%
Bootstrap support for Q753H0 as seed ortholog is 100%.
Bootstrap support for H2WDT9 as seed ortholog is 100%.

Group of orthologs #632. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.japonica:193

Q756E0              	100.00%		H2WMK4              	100.00%
Bootstrap support for Q756E0 as seed ortholog is 100%.
Bootstrap support for H2WMK4 as seed ortholog is 100%.

Group of orthologs #633. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 C.japonica:193

Q75E05              	100.00%		H2WIS9              	100.00%
Bootstrap support for Q75E05 as seed ortholog is 100%.
Bootstrap support for H2WIS9 as seed ortholog is 100%.

Group of orthologs #634. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.japonica:192

Q752R9              	100.00%		H2VI14              	100.00%
                    	       		H2VLU8              	7.06%
Bootstrap support for Q752R9 as seed ortholog is 100%.
Bootstrap support for H2VI14 as seed ortholog is 100%.

Group of orthologs #635. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.japonica:192

Q75ER1              	100.00%		H2WI72              	100.00%
Bootstrap support for Q75ER1 as seed ortholog is 100%.
Bootstrap support for H2WI72 as seed ortholog is 100%.

Group of orthologs #636. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:192 C.japonica:192

Q75CA5              	100.00%		H2WRJ8              	100.00%
Bootstrap support for Q75CA5 as seed ortholog is 100%.
Bootstrap support for H2WRJ8 as seed ortholog is 100%.

Group of orthologs #637. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.japonica:191

Q75AX1              	100.00%		H2X2G5              	100.00%
Q757K0              	100.00%		H2VXY2              	52.94%
Bootstrap support for Q75AX1 as seed ortholog is 100%.
Bootstrap support for Q757K0 as seed ortholog is 100%.
Bootstrap support for H2X2G5 as seed ortholog is 100%.

Group of orthologs #638. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:52

Q75BA4              	100.00%		H2VQV9              	100.00%
                    	       		H2W0T3              	12.26%
Bootstrap support for Q75BA4 as seed ortholog is 99%.
Bootstrap support for H2VQV9 as seed ortholog is 99%.

Group of orthologs #639. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.japonica:191

Q757N7              	100.00%		H2VRY9              	100.00%
Bootstrap support for Q757N7 as seed ortholog is 100%.
Bootstrap support for H2VRY9 as seed ortholog is 100%.

Group of orthologs #640. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.japonica:191

Q75B62              	100.00%		H2WDH7              	100.00%
Bootstrap support for Q75B62 as seed ortholog is 100%.
Bootstrap support for H2WDH7 as seed ortholog is 100%.

Group of orthologs #641. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.japonica:191

Q757V3              	100.00%		K7H3F1              	100.00%
Bootstrap support for Q757V3 as seed ortholog is 100%.
Bootstrap support for K7H3F1 as seed ortholog is 100%.

Group of orthologs #642. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 C.japonica:191

Q75AY6              	100.00%		K7H0D9              	100.00%
Bootstrap support for Q75AY6 as seed ortholog is 100%.
Bootstrap support for K7H0D9 as seed ortholog is 100%.

Group of orthologs #643. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:190

Q759V2              	100.00%		H2W9D7              	100.00%
Q75AW2              	13.18%		
Bootstrap support for Q759V2 as seed ortholog is 100%.
Bootstrap support for H2W9D7 as seed ortholog is 100%.

Group of orthologs #644. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:190

Q754V6              	100.00%		H2VMX8              	100.00%
Bootstrap support for Q754V6 as seed ortholog is 100%.
Bootstrap support for H2VMX8 as seed ortholog is 100%.

Group of orthologs #645. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:21 C.japonica:29

Q75B39              	100.00%		H2VTM2              	100.00%
Bootstrap support for Q75B39 as seed ortholog is 51%.
Alternative seed ortholog is Q752V9 (21 bits away from this cluster)
Bootstrap support for H2VTM2 as seed ortholog is 71%.
Alternative seed ortholog is H2WLC9 (29 bits away from this cluster)

Group of orthologs #646. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:29

Q750P3              	100.00%		H2WE82              	100.00%
Bootstrap support for Q750P3 as seed ortholog is 100%.
Bootstrap support for H2WE82 as seed ortholog is 72%.
Alternative seed ortholog is H2W3H2 (29 bits away from this cluster)

Group of orthologs #647. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:190

Q757S9              	100.00%		H2W9Q7              	100.00%
Bootstrap support for Q757S9 as seed ortholog is 100%.
Bootstrap support for H2W9Q7 as seed ortholog is 100%.

Group of orthologs #648. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:190

Q75DW4              	100.00%		H2W6K9              	100.00%
Bootstrap support for Q75DW4 as seed ortholog is 100%.
Bootstrap support for H2W6K9 as seed ortholog is 100%.

Group of orthologs #649. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:6

Q756D1              	100.00%		H2WKF4              	100.00%
Bootstrap support for Q756D1 as seed ortholog is 100%.
Bootstrap support for H2WKF4 as seed ortholog is 56%.
Alternative seed ortholog is H2VY81 (6 bits away from this cluster)

Group of orthologs #650. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 C.japonica:190

Q754D7              	100.00%		K7GV47              	100.00%
Bootstrap support for Q754D7 as seed ortholog is 100%.
Bootstrap support for K7GV47 as seed ortholog is 100%.

Group of orthologs #651. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:189 C.japonica:110

Q755I0              	100.00%		H2W442              	100.00%
Bootstrap support for Q755I0 as seed ortholog is 100%.
Bootstrap support for H2W442 as seed ortholog is 98%.

Group of orthologs #652. Best score 189 bits
Score difference with first non-orthologous sequence - A.gossypii:189 C.japonica:189

Q758S8              	100.00%		H2WL45              	100.00%
Bootstrap support for Q758S8 as seed ortholog is 100%.
Bootstrap support for H2WL45 as seed ortholog is 100%.

Group of orthologs #653. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.japonica:188

Q757J1              	100.00%		H2WF87              	100.00%
Q751M5              	100.00%		H2VGT4              	100.00%
                    	       		K7GUZ8              	22.12%
                    	       		H2VWT6              	16.43%
Bootstrap support for Q757J1 as seed ortholog is 92%.
Bootstrap support for Q751M5 as seed ortholog is 89%.
Bootstrap support for H2WF87 as seed ortholog is 100%.
Bootstrap support for H2VGT4 as seed ortholog is 100%.

Group of orthologs #654. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:188 C.japonica:10

Q759X1              	100.00%		H2W4R3              	100.00%
Q759M4              	22.98%		
Q75AT4              	5.25%		
Bootstrap support for Q759X1 as seed ortholog is 100%.
Bootstrap support for H2W4R3 as seed ortholog is 64%.
Alternative seed ortholog is K7H5B3 (10 bits away from this cluster)

Group of orthologs #655. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:188

Q75CF2              	100.00%		H2W613              	100.00%
Bootstrap support for Q75CF2 as seed ortholog is 95%.
Bootstrap support for H2W613 as seed ortholog is 100%.

Group of orthologs #656. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:74

Q758E7              	100.00%		H2WKW1              	100.00%
Bootstrap support for Q758E7 as seed ortholog is 98%.
Bootstrap support for H2WKW1 as seed ortholog is 98%.

Group of orthologs #657. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:188

Q75DX7              	100.00%		H2WHT3              	100.00%
Bootstrap support for Q75DX7 as seed ortholog is 95%.
Bootstrap support for H2WHT3 as seed ortholog is 100%.

Group of orthologs #658. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:27 C.japonica:109

Q754J6              	100.00%		H2W9A7              	100.00%
Bootstrap support for Q754J6 as seed ortholog is 75%.
Bootstrap support for H2W9A7 as seed ortholog is 99%.

Group of orthologs #659. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:187 C.japonica:187

Q75D60              	100.00%		H2W4M9              	100.00%
Bootstrap support for Q75D60 as seed ortholog is 100%.
Bootstrap support for H2W4M9 as seed ortholog is 100%.

Group of orthologs #660. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:186

Q750F7              	100.00%		H2VSE0              	100.00%
Bootstrap support for Q750F7 as seed ortholog is 100%.
Bootstrap support for H2VSE0 as seed ortholog is 100%.

Group of orthologs #661. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:186

Q75AB1              	100.00%		H2VI66              	100.00%
Bootstrap support for Q75AB1 as seed ortholog is 100%.
Bootstrap support for H2VI66 as seed ortholog is 100%.

Group of orthologs #662. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:186

Q757T2              	100.00%		H2VVX8              	100.00%
Bootstrap support for Q757T2 as seed ortholog is 100%.
Bootstrap support for H2VVX8 as seed ortholog is 100%.

Group of orthologs #663. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:186

Q752X0              	100.00%		H2WDS1              	100.00%
Bootstrap support for Q752X0 as seed ortholog is 100%.
Bootstrap support for H2WDS1 as seed ortholog is 100%.

Group of orthologs #664. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:53

Q75CT2              	100.00%		H2W2Y8              	100.00%
Bootstrap support for Q75CT2 as seed ortholog is 100%.
Bootstrap support for H2W2Y8 as seed ortholog is 99%.

Group of orthologs #665. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:186

Q74Z36              	100.00%		H2WPT6              	100.00%
Bootstrap support for Q74Z36 as seed ortholog is 100%.
Bootstrap support for H2WPT6 as seed ortholog is 100%.

Group of orthologs #666. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:82

Q758C2              	100.00%		H2WHW1              	100.00%
Bootstrap support for Q758C2 as seed ortholog is 100%.
Bootstrap support for H2WHW1 as seed ortholog is 95%.

Group of orthologs #667. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:186

Q75DX3              	100.00%		H2WHV7              	100.00%
Bootstrap support for Q75DX3 as seed ortholog is 100%.
Bootstrap support for H2WHV7 as seed ortholog is 100%.

Group of orthologs #668. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:186 C.japonica:35

Q751Z8              	100.00%		K7H722              	100.00%
Bootstrap support for Q751Z8 as seed ortholog is 100%.
Bootstrap support for K7H722 as seed ortholog is 72%.
Alternative seed ortholog is H2VKU3 (35 bits away from this cluster)

Group of orthologs #669. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q755G4              	100.00%		H2WQI0              	100.00%
Q757T6              	100.00%		H2WC24              	25.78%
Bootstrap support for Q755G4 as seed ortholog is 100%.
Bootstrap support for Q757T6 as seed ortholog is 100%.
Bootstrap support for H2WQI0 as seed ortholog is 100%.

Group of orthologs #670. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q753F8              	100.00%		H2WFB3              	100.00%
                    	       		H2VWE6              	66.67%
Bootstrap support for Q753F8 as seed ortholog is 100%.
Bootstrap support for H2WFB3 as seed ortholog is 100%.

Group of orthologs #671. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q75CF0              	100.00%		H2WR81              	100.00%
                    	       		H2WQC4              	54.82%
Bootstrap support for Q75CF0 as seed ortholog is 100%.
Bootstrap support for H2WR81 as seed ortholog is 100%.

Group of orthologs #672. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:138

Q75BS3              	100.00%		H2VJE7              	100.00%
Bootstrap support for Q75BS3 as seed ortholog is 100%.
Bootstrap support for H2VJE7 as seed ortholog is 99%.

Group of orthologs #673. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.japonica:117

Q74ZW2              	100.00%		H2W6C5              	100.00%
Bootstrap support for Q74ZW2 as seed ortholog is 99%.
Bootstrap support for H2W6C5 as seed ortholog is 99%.

Group of orthologs #674. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q75C11              	100.00%		H2VXZ7              	100.00%
Bootstrap support for Q75C11 as seed ortholog is 100%.
Bootstrap support for H2VXZ7 as seed ortholog is 100%.

Group of orthologs #675. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q75F45              	100.00%		H2W4U7              	100.00%
Bootstrap support for Q75F45 as seed ortholog is 100%.
Bootstrap support for H2W4U7 as seed ortholog is 100%.

Group of orthologs #676. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q75C07              	100.00%		H2WWJ3              	100.00%
Bootstrap support for Q75C07 as seed ortholog is 100%.
Bootstrap support for H2WWJ3 as seed ortholog is 100%.

Group of orthologs #677. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q755M0              	100.00%		K7H4Y8              	100.00%
Bootstrap support for Q755M0 as seed ortholog is 100%.
Bootstrap support for K7H4Y8 as seed ortholog is 100%.

Group of orthologs #678. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:185 C.japonica:185

Q75E49              	100.00%		K7H9P6              	100.00%
Bootstrap support for Q75E49 as seed ortholog is 100%.
Bootstrap support for K7H9P6 as seed ortholog is 100%.

Group of orthologs #679. Best score 184 bits
Score difference with first non-orthologous sequence - A.gossypii:11 C.japonica:184

Q75AL4              	100.00%		H2VM36              	100.00%
Bootstrap support for Q75AL4 as seed ortholog is 62%.
Alternative seed ortholog is Q75C62 (11 bits away from this cluster)
Bootstrap support for H2VM36 as seed ortholog is 100%.

Group of orthologs #680. Best score 184 bits
Score difference with first non-orthologous sequence - A.gossypii:184 C.japonica:184

Q75AT1              	100.00%		H2WKY7              	100.00%
Bootstrap support for Q75AT1 as seed ortholog is 100%.
Bootstrap support for H2WKY7 as seed ortholog is 100%.

Group of orthologs #681. Best score 184 bits
Score difference with first non-orthologous sequence - A.gossypii:184 C.japonica:184

Q75EK1              	100.00%		H2WMW9              	100.00%
Bootstrap support for Q75EK1 as seed ortholog is 100%.
Bootstrap support for H2WMW9 as seed ortholog is 100%.

Group of orthologs #682. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:28 C.japonica:114

Q750M1              	100.00%		H2VUY1              	100.00%
Bootstrap support for Q750M1 as seed ortholog is 74%.
Alternative seed ortholog is Q751L2 (28 bits away from this cluster)
Bootstrap support for H2VUY1 as seed ortholog is 99%.

Group of orthologs #683. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.japonica:183

Q754S9              	100.00%		H2VZJ9              	100.00%
Bootstrap support for Q754S9 as seed ortholog is 100%.
Bootstrap support for H2VZJ9 as seed ortholog is 100%.

Group of orthologs #684. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.japonica:183

Q756G4              	100.00%		H2WLS9              	100.00%
Bootstrap support for Q756G4 as seed ortholog is 100%.
Bootstrap support for H2WLS9 as seed ortholog is 100%.

Group of orthologs #685. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 C.japonica:183

Q752N9              	100.00%		K7HYY9              	100.00%
Bootstrap support for Q752N9 as seed ortholog is 100%.
Bootstrap support for K7HYY9 as seed ortholog is 100%.

Group of orthologs #686. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:21 C.japonica:182

Q75BY1              	100.00%		K7HDU3              	100.00%
                    	       		K7IAU1              	100.00%
Bootstrap support for Q75BY1 as seed ortholog is 78%.
Bootstrap support for K7HDU3 as seed ortholog is 100%.
Bootstrap support for K7IAU1 as seed ortholog is 100%.

Group of orthologs #687. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.japonica:32

Q752R6              	100.00%		H2WBB0              	100.00%
Bootstrap support for Q752R6 as seed ortholog is 90%.
Bootstrap support for H2WBB0 as seed ortholog is 76%.

Group of orthologs #688. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:182

Q750V1              	100.00%		H2WID5              	100.00%
Bootstrap support for Q750V1 as seed ortholog is 99%.
Bootstrap support for H2WID5 as seed ortholog is 100%.

Group of orthologs #689. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:182 C.japonica:182

Q751E6              	100.00%		H2WXE6              	100.00%
Bootstrap support for Q751E6 as seed ortholog is 100%.
Bootstrap support for H2WXE6 as seed ortholog is 100%.

Group of orthologs #690. Best score 182 bits
Score difference with first non-orthologous sequence - A.gossypii:182 C.japonica:130

Q754T6              	100.00%		K7H6K3              	100.00%
Bootstrap support for Q754T6 as seed ortholog is 100%.
Bootstrap support for K7H6K3 as seed ortholog is 99%.

Group of orthologs #691. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.japonica:109

Q757Q7              	100.00%		H2VSJ8              	100.00%
Bootstrap support for Q757Q7 as seed ortholog is 100%.
Bootstrap support for H2VSJ8 as seed ortholog is 99%.

Group of orthologs #692. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.japonica:8

Q75DC8              	100.00%		H2W7U3              	100.00%
Bootstrap support for Q75DC8 as seed ortholog is 75%.
Bootstrap support for H2W7U3 as seed ortholog is 80%.

Group of orthologs #693. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:181 C.japonica:181

Q759F6              	100.00%		H2WE89              	100.00%
Bootstrap support for Q759F6 as seed ortholog is 100%.
Bootstrap support for H2WE89 as seed ortholog is 100%.

Group of orthologs #694. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:181 C.japonica:181

Q75B56              	100.00%		H2WDI3              	100.00%
Bootstrap support for Q75B56 as seed ortholog is 100%.
Bootstrap support for H2WDI3 as seed ortholog is 100%.

Group of orthologs #695. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:105

Q758V4              	100.00%		K7GXW4              	100.00%
Bootstrap support for Q758V4 as seed ortholog is 99%.
Bootstrap support for K7GXW4 as seed ortholog is 99%.

Group of orthologs #696. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:23

Q756J7              	100.00%		H2VJP0              	100.00%
Bootstrap support for Q756J7 as seed ortholog is 100%.
Bootstrap support for H2VJP0 as seed ortholog is 90%.

Group of orthologs #697. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:180

P62583              	100.00%		H2VTQ4              	100.00%
Bootstrap support for P62583 as seed ortholog is 100%.
Bootstrap support for H2VTQ4 as seed ortholog is 100%.

Group of orthologs #698. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:180

Q75AA8              	100.00%		H2VPP0              	100.00%
Bootstrap support for Q75AA8 as seed ortholog is 100%.
Bootstrap support for H2VPP0 as seed ortholog is 100%.

Group of orthologs #699. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:180

Q75D29              	100.00%		H2VRF3              	100.00%
Bootstrap support for Q75D29 as seed ortholog is 100%.
Bootstrap support for H2VRF3 as seed ortholog is 100%.

Group of orthologs #700. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:180

Q756I1              	100.00%		H2W400              	100.00%
Bootstrap support for Q756I1 as seed ortholog is 100%.
Bootstrap support for H2W400 as seed ortholog is 100%.

Group of orthologs #701. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:180

Q75D05              	100.00%		H2W0B6              	100.00%
Bootstrap support for Q75D05 as seed ortholog is 100%.
Bootstrap support for H2W0B6 as seed ortholog is 100%.

Group of orthologs #702. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:30

Q75D95              	100.00%		H2W9C5              	100.00%
Bootstrap support for Q75D95 as seed ortholog is 100%.
Bootstrap support for H2W9C5 as seed ortholog is 65%.
Alternative seed ortholog is H2VR26 (30 bits away from this cluster)

Group of orthologs #703. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 C.japonica:180

Q754N8              	100.00%		H2XG97              	100.00%
Bootstrap support for Q754N8 as seed ortholog is 100%.
Bootstrap support for H2XG97 as seed ortholog is 100%.

Group of orthologs #704. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 C.japonica:179

Q757H7              	100.00%		H2VPC6              	100.00%
                    	       		K7IBX7              	40.66%
Bootstrap support for Q757H7 as seed ortholog is 100%.
Bootstrap support for H2VPC6 as seed ortholog is 100%.

Group of orthologs #705. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:179

Q75BN9              	100.00%		H2WKV7              	100.00%
                    	       		H2WC44              	36.73%
Bootstrap support for Q75BN9 as seed ortholog is 99%.
Bootstrap support for H2WKV7 as seed ortholog is 100%.

Group of orthologs #706. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 C.japonica:179

Q74ZF7              	100.00%		H2VKE0              	100.00%
Bootstrap support for Q74ZF7 as seed ortholog is 100%.
Bootstrap support for H2VKE0 as seed ortholog is 100%.

Group of orthologs #707. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:59

Q75CM3              	100.00%		H2WHB9              	100.00%
Bootstrap support for Q75CM3 as seed ortholog is 99%.
Bootstrap support for H2WHB9 as seed ortholog is 98%.

Group of orthologs #708. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:178 C.japonica:78

Q75CL0              	100.00%		H2WE05              	100.00%
                    	       		H2W8H3              	19.21%
                    	       		H2WP75              	14.63%
Bootstrap support for Q75CL0 as seed ortholog is 100%.
Bootstrap support for H2WE05 as seed ortholog is 91%.

Group of orthologs #709. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:178

Q752C6              	100.00%		H2VVR5              	100.00%
Bootstrap support for Q752C6 as seed ortholog is 99%.
Bootstrap support for H2VVR5 as seed ortholog is 100%.

Group of orthologs #710. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:178 C.japonica:178

Q75B54              	100.00%		H2VN46              	100.00%
Bootstrap support for Q75B54 as seed ortholog is 100%.
Bootstrap support for H2VN46 as seed ortholog is 100%.

Group of orthologs #711. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.japonica:177

Q753V1              	100.00%		H2VJU0              	100.00%
Q75AS9              	100.00%		H2W7I8              	100.00%
Q75C79              	38.31%		
Bootstrap support for Q753V1 as seed ortholog is 100%.
Bootstrap support for Q75AS9 as seed ortholog is 100%.
Bootstrap support for H2VJU0 as seed ortholog is 100%.
Bootstrap support for H2W7I8 as seed ortholog is 100%.

Group of orthologs #712. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.japonica:177

Q754L4              	100.00%		H2VIT8              	100.00%
Bootstrap support for Q754L4 as seed ortholog is 100%.
Bootstrap support for H2VIT8 as seed ortholog is 100%.

Group of orthologs #713. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.japonica:177

Q75ET0              	100.00%		H2VHL1              	100.00%
Bootstrap support for Q75ET0 as seed ortholog is 100%.
Bootstrap support for H2VHL1 as seed ortholog is 100%.

Group of orthologs #714. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:177 C.japonica:126

Q75F52              	100.00%		H2VSV5              	100.00%
Bootstrap support for Q75F52 as seed ortholog is 100%.
Bootstrap support for H2VSV5 as seed ortholog is 99%.

Group of orthologs #715. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.japonica:176

Q757Z7              	100.00%		H2VI00              	100.00%
Bootstrap support for Q757Z7 as seed ortholog is 100%.
Bootstrap support for H2VI00 as seed ortholog is 100%.

Group of orthologs #716. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.japonica:176

Q754J8              	100.00%		H2W3X2              	100.00%
Bootstrap support for Q754J8 as seed ortholog is 100%.
Bootstrap support for H2W3X2 as seed ortholog is 100%.

Group of orthologs #717. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 C.japonica:176

Q75AN0              	100.00%		H2WR00              	100.00%
Bootstrap support for Q75AN0 as seed ortholog is 100%.
Bootstrap support for H2WR00 as seed ortholog is 100%.

Group of orthologs #718. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:51

Q754E6              	100.00%		K7GX73              	100.00%
Bootstrap support for Q754E6 as seed ortholog is 99%.
Bootstrap support for K7GX73 as seed ortholog is 98%.

Group of orthologs #719. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.japonica:175

Q751M7              	100.00%		H2VG47              	100.00%
Bootstrap support for Q751M7 as seed ortholog is 100%.
Bootstrap support for H2VG47 as seed ortholog is 100%.

Group of orthologs #720. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.japonica:175

Q753I2              	100.00%		H2VL98              	100.00%
Bootstrap support for Q753I2 as seed ortholog is 100%.
Bootstrap support for H2VL98 as seed ortholog is 100%.

Group of orthologs #721. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:108

Q754D9              	100.00%		H2WIH0              	100.00%
Bootstrap support for Q754D9 as seed ortholog is 98%.
Bootstrap support for H2WIH0 as seed ortholog is 99%.

Group of orthologs #722. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.japonica:42

Q755C1              	100.00%		H2WP88              	100.00%
Bootstrap support for Q755C1 as seed ortholog is 100%.
Bootstrap support for H2WP88 as seed ortholog is 83%.

Group of orthologs #723. Best score 175 bits
Score difference with first non-orthologous sequence - A.gossypii:175 C.japonica:175

Q75EH7              	100.00%		H2WMS1              	100.00%
Bootstrap support for Q75EH7 as seed ortholog is 100%.
Bootstrap support for H2WMS1 as seed ortholog is 100%.

Group of orthologs #724. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.japonica:174

O74267              	100.00%		H2VXT3              	100.00%
Q74ZK0              	26.08%		
Bootstrap support for O74267 as seed ortholog is 100%.
Bootstrap support for H2VXT3 as seed ortholog is 100%.

Group of orthologs #725. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.japonica:174

Q751K5              	100.00%		H2VY92              	100.00%
Bootstrap support for Q751K5 as seed ortholog is 100%.
Bootstrap support for H2VY92 as seed ortholog is 100%.

Group of orthologs #726. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.japonica:174

Q759W2              	100.00%		H2VZJ0              	100.00%
Bootstrap support for Q759W2 as seed ortholog is 100%.
Bootstrap support for H2VZJ0 as seed ortholog is 100%.

Group of orthologs #727. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:174 C.japonica:174

Q75BD8              	100.00%		H2W7W5              	100.00%
Bootstrap support for Q75BD8 as seed ortholog is 100%.
Bootstrap support for H2W7W5 as seed ortholog is 100%.

Group of orthologs #728. Best score 174 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.japonica:66

Q75B41              	100.00%		H2WLP6              	100.00%
Bootstrap support for Q75B41 as seed ortholog is 87%.
Bootstrap support for H2WLP6 as seed ortholog is 97%.

Group of orthologs #729. Best score 173 bits
Score difference with first non-orthologous sequence - A.gossypii:173 C.japonica:173

Q755M8              	100.00%		H2VLR3              	100.00%
Bootstrap support for Q755M8 as seed ortholog is 100%.
Bootstrap support for H2VLR3 as seed ortholog is 100%.

Group of orthologs #730. Best score 173 bits
Score difference with first non-orthologous sequence - A.gossypii:173 C.japonica:173

Q75CA8              	100.00%		K7GY07              	100.00%
Bootstrap support for Q75CA8 as seed ortholog is 100%.
Bootstrap support for K7GY07 as seed ortholog is 100%.

Group of orthologs #731. Best score 172 bits
Score difference with first non-orthologous sequence - A.gossypii:172 C.japonica:172

Q74ZU8              	100.00%		K7I2N1              	100.00%
                    	       		H2W9W7              	61.99%
Bootstrap support for Q74ZU8 as seed ortholog is 100%.
Bootstrap support for K7I2N1 as seed ortholog is 100%.

Group of orthologs #732. Best score 172 bits
Score difference with first non-orthologous sequence - A.gossypii:172 C.japonica:172

Q750W9              	100.00%		H2VT16              	100.00%
Bootstrap support for Q750W9 as seed ortholog is 100%.
Bootstrap support for H2VT16 as seed ortholog is 100%.

Group of orthologs #733. Best score 172 bits
Score difference with first non-orthologous sequence - A.gossypii:172 C.japonica:172

Q756I6              	100.00%		K7HM11              	100.00%
Bootstrap support for Q756I6 as seed ortholog is 100%.
Bootstrap support for K7HM11 as seed ortholog is 100%.

Group of orthologs #734. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:35 C.japonica:13

Q74ZY1              	100.00%		H2VQZ6              	100.00%
                    	       		K7GZU9              	45.36%
                    	       		H2WLE8              	18.04%
                    	       		K7H5S2              	17.04%
                    	       		K7GVQ3              	8.75%
Bootstrap support for Q74ZY1 as seed ortholog is 77%.
Bootstrap support for H2VQZ6 as seed ortholog is 67%.
Alternative seed ortholog is H2VMP1 (13 bits away from this cluster)

Group of orthologs #735. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.japonica:171

Q758U5              	100.00%		H2WEW7              	100.00%
                    	       		K7I0M8              	10.69%
Bootstrap support for Q758U5 as seed ortholog is 100%.
Bootstrap support for H2WEW7 as seed ortholog is 100%.

Group of orthologs #736. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.japonica:171

Q75CJ5              	100.00%		H2VJ18              	100.00%
Bootstrap support for Q75CJ5 as seed ortholog is 100%.
Bootstrap support for H2VJ18 as seed ortholog is 100%.

Group of orthologs #737. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.japonica:171

Q757V5              	100.00%		H2VW78              	100.00%
Bootstrap support for Q757V5 as seed ortholog is 100%.
Bootstrap support for H2VW78 as seed ortholog is 100%.

Group of orthologs #738. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:4

Q75DG7              	100.00%		H2WDP5              	100.00%
Bootstrap support for Q75DG7 as seed ortholog is 99%.
Bootstrap support for H2WDP5 as seed ortholog is 56%.
Alternative seed ortholog is H2VLZ2 (4 bits away from this cluster)

Group of orthologs #739. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 C.japonica:171

Q75CJ8              	100.00%		H2WKN5              	100.00%
Bootstrap support for Q75CJ8 as seed ortholog is 100%.
Bootstrap support for H2WKN5 as seed ortholog is 100%.

Group of orthologs #740. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q757A4              	100.00%		H2VHE9              	100.00%
Bootstrap support for Q757A4 as seed ortholog is 100%.
Bootstrap support for H2VHE9 as seed ortholog is 100%.

Group of orthologs #741. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q756A4              	100.00%		H2VN14              	100.00%
Bootstrap support for Q756A4 as seed ortholog is 100%.
Bootstrap support for H2VN14 as seed ortholog is 100%.

Group of orthologs #742. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q759X7              	100.00%		H2VV26              	100.00%
Bootstrap support for Q759X7 as seed ortholog is 100%.
Bootstrap support for H2VV26 as seed ortholog is 100%.

Group of orthologs #743. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q759X6              	100.00%		H2VVB7              	100.00%
Bootstrap support for Q759X6 as seed ortholog is 100%.
Bootstrap support for H2VVB7 as seed ortholog is 100%.

Group of orthologs #744. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q75E84              	100.00%		H2W525              	100.00%
Bootstrap support for Q75E84 as seed ortholog is 100%.
Bootstrap support for H2W525 as seed ortholog is 100%.

Group of orthologs #745. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q759L9              	100.00%		H2WF94              	100.00%
Bootstrap support for Q759L9 as seed ortholog is 100%.
Bootstrap support for H2WF94 as seed ortholog is 100%.

Group of orthologs #746. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:170 C.japonica:170

Q755G8              	100.00%		H2WJR7              	100.00%
Bootstrap support for Q755G8 as seed ortholog is 100%.
Bootstrap support for H2WJR7 as seed ortholog is 100%.

Group of orthologs #747. Best score 170 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:32

Q750Z0              	100.00%		H2WRB2              	100.00%
Bootstrap support for Q750Z0 as seed ortholog is 99%.
Bootstrap support for H2WRB2 as seed ortholog is 66%.
Alternative seed ortholog is H2VLZ2 (32 bits away from this cluster)

Group of orthologs #748. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 C.japonica:169

Q75DV1              	100.00%		H2VRC0              	100.00%
                    	       		K7HR47              	55.09%
Bootstrap support for Q75DV1 as seed ortholog is 100%.
Bootstrap support for H2VRC0 as seed ortholog is 100%.

Group of orthologs #749. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:169

Q75CB3              	100.00%		H2W1D8              	100.00%
Q753H5              	20.28%		
Bootstrap support for Q75CB3 as seed ortholog is 98%.
Bootstrap support for H2W1D8 as seed ortholog is 100%.

Group of orthologs #750. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 C.japonica:169

Q754I2              	100.00%		H2VRA7              	100.00%
Bootstrap support for Q754I2 as seed ortholog is 100%.
Bootstrap support for H2VRA7 as seed ortholog is 100%.

Group of orthologs #751. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 C.japonica:169

Q75B45              	100.00%		H2VVH4              	100.00%
Bootstrap support for Q75B45 as seed ortholog is 100%.
Bootstrap support for H2VVH4 as seed ortholog is 100%.

Group of orthologs #752. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:9 C.japonica:169

Q757K9              	100.00%		K7IFN4              	100.00%
Bootstrap support for Q757K9 as seed ortholog is 60%.
Alternative seed ortholog is Q75DN9 (9 bits away from this cluster)
Bootstrap support for K7IFN4 as seed ortholog is 100%.

Group of orthologs #753. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:168 C.japonica:168

Q8J1F8              	100.00%		K7HNQ9              	100.00%
Q74ZL5              	100.00%		K7I396              	100.00%
                    	       		K7I6T0              	100.00%
                    	       		K7HW29              	100.00%
                    	       		K7ILC1              	100.00%
                    	       		K7ILR0              	94.59%
                    	       		K7I0S5              	83.78%
                    	       		K7HR38              	78.38%
                    	       		K7HS03              	67.57%
Bootstrap support for Q8J1F8 as seed ortholog is 100%.
Bootstrap support for Q74ZL5 as seed ortholog is 100%.
Bootstrap support for K7HNQ9 as seed ortholog is 100%.
Bootstrap support for K7I396 as seed ortholog is 100%.
Bootstrap support for K7I6T0 as seed ortholog is 100%.
Bootstrap support for K7HW29 as seed ortholog is 100%.
Bootstrap support for K7ILC1 as seed ortholog is 100%.

Group of orthologs #754. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:168 C.japonica:71

Q74ZC8              	100.00%		H2VYH3              	100.00%
                    	       		H2WG54              	26.20%
Bootstrap support for Q74ZC8 as seed ortholog is 100%.
Bootstrap support for H2VYH3 as seed ortholog is 93%.

Group of orthologs #755. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:168 C.japonica:49

Q75AL9              	100.00%		H2VRG7              	100.00%
                    	       		K7H136              	26.89%
Bootstrap support for Q75AL9 as seed ortholog is 100%.
Bootstrap support for H2VRG7 as seed ortholog is 84%.

Group of orthologs #756. Best score 167 bits
Score difference with first non-orthologous sequence - A.gossypii:167 C.japonica:167

Q754R9              	100.00%		H2WE15              	100.00%
Bootstrap support for Q754R9 as seed ortholog is 100%.
Bootstrap support for H2WE15 as seed ortholog is 100%.

Group of orthologs #757. Best score 167 bits
Score difference with first non-orthologous sequence - A.gossypii:167 C.japonica:167

Q75E32              	100.00%		H2WCK6              	100.00%
Bootstrap support for Q75E32 as seed ortholog is 100%.
Bootstrap support for H2WCK6 as seed ortholog is 100%.

Group of orthologs #758. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.japonica:166

Q750G7              	100.00%		H2VNX4              	100.00%
Bootstrap support for Q750G7 as seed ortholog is 100%.
Bootstrap support for H2VNX4 as seed ortholog is 100%.

Group of orthologs #759. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.japonica:67

Q752M3              	100.00%		H2W387              	100.00%
Bootstrap support for Q752M3 as seed ortholog is 57%.
Alternative seed ortholog is Q754R5 (48 bits away from this cluster)
Bootstrap support for H2W387 as seed ortholog is 89%.

Group of orthologs #760. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.japonica:166

Q753B2              	100.00%		H2WI30              	100.00%
Bootstrap support for Q753B2 as seed ortholog is 100%.
Bootstrap support for H2WI30 as seed ortholog is 100%.

Group of orthologs #761. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 C.japonica:166

Q75DB6              	100.00%		H2WNB3              	100.00%
Bootstrap support for Q75DB6 as seed ortholog is 100%.
Bootstrap support for H2WNB3 as seed ortholog is 100%.

Group of orthologs #762. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.japonica:5

Q75BV1              	100.00%		H2W2C5              	100.00%
                    	       		H2X1R2              	7.11%
Bootstrap support for Q75BV1 as seed ortholog is 100%.
Bootstrap support for H2W2C5 as seed ortholog is 55%.
Alternative seed ortholog is H2VNT2 (5 bits away from this cluster)

Group of orthologs #763. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.japonica:165

Q752B3              	100.00%		H2VIE4              	100.00%
Bootstrap support for Q752B3 as seed ortholog is 100%.
Bootstrap support for H2VIE4 as seed ortholog is 100%.

Group of orthologs #764. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.japonica:104

Q75CL8              	100.00%		H2VWM9              	100.00%
Bootstrap support for Q75CL8 as seed ortholog is 99%.
Bootstrap support for H2VWM9 as seed ortholog is 99%.

Group of orthologs #765. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.japonica:165

Q75F88              	100.00%		H2W7L3              	100.00%
Bootstrap support for Q75F88 as seed ortholog is 100%.
Bootstrap support for H2W7L3 as seed ortholog is 100%.

Group of orthologs #766. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 C.japonica:165

Q75BC0              	100.00%		H2WHX4              	100.00%
Bootstrap support for Q75BC0 as seed ortholog is 100%.
Bootstrap support for H2WHX4 as seed ortholog is 100%.

Group of orthologs #767. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 C.japonica:164

Q75AU0              	100.00%		H2W084              	100.00%
Bootstrap support for Q75AU0 as seed ortholog is 100%.
Bootstrap support for H2W084 as seed ortholog is 100%.

Group of orthologs #768. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 C.japonica:164

Q752A1              	100.00%		H2WD30              	100.00%
Bootstrap support for Q752A1 as seed ortholog is 100%.
Bootstrap support for H2WD30 as seed ortholog is 100%.

Group of orthologs #769. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 C.japonica:28

Q751L8              	100.00%		H2WL43              	100.00%
Bootstrap support for Q751L8 as seed ortholog is 100%.
Bootstrap support for H2WL43 as seed ortholog is 85%.

Group of orthologs #770. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q754M7              	100.00%		K7GZR1              	100.00%
                    	       		H2WHD4              	18.06%
                    	       		H2W5N9              	16.47%
                    	       		H2W4V1              	15.77%
                    	       		H2VG85              	14.48%
                    	       		H2VXH2              	12.10%
                    	       		H2WNP4              	6.35%
Bootstrap support for Q754M7 as seed ortholog is 100%.
Bootstrap support for K7GZR1 as seed ortholog is 100%.

Group of orthologs #771. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:103

Q75EQ5              	100.00%		H2WPB2              	100.00%
                    	       		H2WIN3              	5.19%
Bootstrap support for Q75EQ5 as seed ortholog is 100%.
Bootstrap support for H2WPB2 as seed ortholog is 99%.

Group of orthologs #772. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q753B1              	100.00%		H2VHX1              	100.00%
Bootstrap support for Q753B1 as seed ortholog is 100%.
Bootstrap support for H2VHX1 as seed ortholog is 100%.

Group of orthologs #773. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q758L9              	100.00%		H2VLA0              	100.00%
Bootstrap support for Q758L9 as seed ortholog is 100%.
Bootstrap support for H2VLA0 as seed ortholog is 100%.

Group of orthologs #774. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q74Z47              	100.00%		H2WA92              	100.00%
Bootstrap support for Q74Z47 as seed ortholog is 100%.
Bootstrap support for H2WA92 as seed ortholog is 100%.

Group of orthologs #775. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q75E78              	100.00%		H2VT80              	100.00%
Bootstrap support for Q75E78 as seed ortholog is 100%.
Bootstrap support for H2VT80 as seed ortholog is 100%.

Group of orthologs #776. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q751A8              	100.00%		H2WZ45              	100.00%
Bootstrap support for Q751A8 as seed ortholog is 100%.
Bootstrap support for H2WZ45 as seed ortholog is 100%.

Group of orthologs #777. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:44

Q756N2              	100.00%		K7GTW6              	100.00%
Bootstrap support for Q756N2 as seed ortholog is 89%.
Bootstrap support for K7GTW6 as seed ortholog is 84%.

Group of orthologs #778. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 C.japonica:163

Q750R4              	100.00%		K7HY12              	100.00%
Bootstrap support for Q750R4 as seed ortholog is 100%.
Bootstrap support for K7HY12 as seed ortholog is 100%.

Group of orthologs #779. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.japonica:162

Q75DV2              	100.00%		H2VID6              	100.00%
Bootstrap support for Q75DV2 as seed ortholog is 100%.
Bootstrap support for H2VID6 as seed ortholog is 100%.

Group of orthologs #780. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.japonica:92

Q758L4              	100.00%		H2W104              	100.00%
Bootstrap support for Q758L4 as seed ortholog is 99%.
Bootstrap support for H2W104 as seed ortholog is 99%.

Group of orthologs #781. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.japonica:162

Q75C61              	100.00%		H2W2X4              	100.00%
Bootstrap support for Q75C61 as seed ortholog is 100%.
Bootstrap support for H2W2X4 as seed ortholog is 100%.

Group of orthologs #782. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.japonica:162

Q74ZD1              	100.00%		H2WGY2              	100.00%
Bootstrap support for Q74ZD1 as seed ortholog is 100%.
Bootstrap support for H2WGY2 as seed ortholog is 100%.

Group of orthologs #783. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.japonica:109

Q757X1              	100.00%		H2WKX1              	100.00%
Bootstrap support for Q757X1 as seed ortholog is 100%.
Bootstrap support for H2WKX1 as seed ortholog is 99%.

Group of orthologs #784. Best score 162 bits
Score difference with first non-orthologous sequence - A.gossypii:162 C.japonica:162

Q758L5              	100.00%		K7GTZ1              	100.00%
Bootstrap support for Q758L5 as seed ortholog is 100%.
Bootstrap support for K7GTZ1 as seed ortholog is 100%.

Group of orthologs #785. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.japonica:161

Q757Y2              	100.00%		H2VI62              	100.00%
Bootstrap support for Q757Y2 as seed ortholog is 100%.
Bootstrap support for H2VI62 as seed ortholog is 100%.

Group of orthologs #786. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 C.japonica:161

Q75C28              	100.00%		H2VQA3              	100.00%
Bootstrap support for Q75C28 as seed ortholog is 100%.
Bootstrap support for H2VQA3 as seed ortholog is 100%.

Group of orthologs #787. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:27 C.japonica:36

Q75B13              	100.00%		H2VRY5              	100.00%
Bootstrap support for Q75B13 as seed ortholog is 84%.
Bootstrap support for H2VRY5 as seed ortholog is 89%.

Group of orthologs #788. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 C.japonica:60

Q75CC6              	100.00%		H2WQM2              	100.00%
Bootstrap support for Q75CC6 as seed ortholog is 100%.
Bootstrap support for H2WQM2 as seed ortholog is 99%.

Group of orthologs #789. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:159 C.japonica:159

Q75E54              	100.00%		H2W170              	100.00%
                    	       		K7I9Z4              	79.25%
                    	       		K7I5G9              	79.07%
                    	       		K7IE04              	78.35%
                    	       		K7HSP2              	66.55%
                    	       		K7HM51              	59.21%
Bootstrap support for Q75E54 as seed ortholog is 100%.
Bootstrap support for H2W170 as seed ortholog is 100%.

Group of orthologs #790. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.japonica:91

Q750D1              	100.00%		H2W8X6              	100.00%
                    	       		K7HTW5              	60.58%
Bootstrap support for Q750D1 as seed ortholog is 100%.
Bootstrap support for H2W8X6 as seed ortholog is 98%.

Group of orthologs #791. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.japonica:158

Q754E7              	100.00%		H2VQJ6              	100.00%
Bootstrap support for Q754E7 as seed ortholog is 100%.
Bootstrap support for H2VQJ6 as seed ortholog is 100%.

Group of orthologs #792. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:73

Q759V3              	100.00%		H2VSD3              	100.00%
Bootstrap support for Q759V3 as seed ortholog is 99%.
Bootstrap support for H2VSD3 as seed ortholog is 99%.

Group of orthologs #793. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 C.japonica:158

Q759B6              	100.00%		H2WHM5              	100.00%
Bootstrap support for Q759B6 as seed ortholog is 100%.
Bootstrap support for H2WHM5 as seed ortholog is 100%.

Group of orthologs #794. Best score 157 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.japonica:157

Q758B7              	100.00%		H2VUD7              	100.00%
Q757G3              	10.47%		
Bootstrap support for Q758B7 as seed ortholog is 100%.
Bootstrap support for H2VUD7 as seed ortholog is 100%.

Group of orthologs #795. Best score 157 bits
Score difference with first non-orthologous sequence - A.gossypii:157 C.japonica:157

Q751D7              	100.00%		K7H4H6              	100.00%
Bootstrap support for Q751D7 as seed ortholog is 100%.
Bootstrap support for K7H4H6 as seed ortholog is 100%.

Group of orthologs #796. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:23 C.japonica:69

Q74Z16              	100.00%		K7II67              	100.00%
                    	       		H2WQ96              	47.89%
Bootstrap support for Q74Z16 as seed ortholog is 80%.
Bootstrap support for K7II67 as seed ortholog is 83%.

Group of orthologs #797. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.japonica:156

Q752I6              	100.00%		H2VL46              	100.00%
Bootstrap support for Q752I6 as seed ortholog is 100%.
Bootstrap support for H2VL46 as seed ortholog is 100%.

Group of orthologs #798. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.japonica:156

Q750X1              	100.00%		H2WAD1              	100.00%
Bootstrap support for Q750X1 as seed ortholog is 100%.
Bootstrap support for H2WAD1 as seed ortholog is 100%.

Group of orthologs #799. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.japonica:156

Q757R6              	100.00%		H2W3P9              	100.00%
Bootstrap support for Q757R6 as seed ortholog is 99%.
Bootstrap support for H2W3P9 as seed ortholog is 100%.

Group of orthologs #800. Best score 156 bits
Score difference with first non-orthologous sequence - A.gossypii:156 C.japonica:10

Q75EA9              	100.00%		H2WAL4              	100.00%
Bootstrap support for Q75EA9 as seed ortholog is 100%.
Bootstrap support for H2WAL4 as seed ortholog is 56%.
Alternative seed ortholog is H2WIJ8 (10 bits away from this cluster)

Group of orthologs #801. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.japonica:79

Q757I9              	100.00%		H2WQD0              	100.00%
Bootstrap support for Q757I9 as seed ortholog is 100%.
Bootstrap support for H2WQD0 as seed ortholog is 99%.

Group of orthologs #802. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.japonica:155

Q759A8              	100.00%		K7GTT0              	100.00%
Bootstrap support for Q759A8 as seed ortholog is 100%.
Bootstrap support for K7GTT0 as seed ortholog is 100%.

Group of orthologs #803. Best score 155 bits
Score difference with first non-orthologous sequence - A.gossypii:155 C.japonica:155

Q753Q2              	100.00%		K7H9Y0              	100.00%
Bootstrap support for Q753Q2 as seed ortholog is 100%.
Bootstrap support for K7H9Y0 as seed ortholog is 100%.

Group of orthologs #804. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:18

Q75CK3              	100.00%		H2W7V9              	100.00%
Q75F92              	8.80%		
Bootstrap support for Q75CK3 as seed ortholog is 99%.
Bootstrap support for H2W7V9 as seed ortholog is 76%.

Group of orthologs #805. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:154 C.japonica:154

Q755S0              	100.00%		H2VLN3              	100.00%
Bootstrap support for Q755S0 as seed ortholog is 100%.
Bootstrap support for H2VLN3 as seed ortholog is 100%.

Group of orthologs #806. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:154 C.japonica:154

Q759T2              	100.00%		H2VRE0              	100.00%
Bootstrap support for Q759T2 as seed ortholog is 100%.
Bootstrap support for H2VRE0 as seed ortholog is 100%.

Group of orthologs #807. Best score 154 bits
Score difference with first non-orthologous sequence - A.gossypii:154 C.japonica:154

Q75CG2              	100.00%		H2WB42              	100.00%
Bootstrap support for Q75CG2 as seed ortholog is 100%.
Bootstrap support for H2WB42 as seed ortholog is 100%.

Group of orthologs #808. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.japonica:30

Q756H4              	100.00%		H2VMB3              	100.00%
                    	       		K7HWS8              	99.41%
                    	       		K7H019              	44.62%
                    	       		H2WDN8              	5.45%
Bootstrap support for Q756H4 as seed ortholog is 82%.
Bootstrap support for H2VMB3 as seed ortholog is 78%.

Group of orthologs #809. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:98

Q753W2              	100.00%		H2VYK9              	100.00%
Bootstrap support for Q753W2 as seed ortholog is 99%.
Bootstrap support for H2VYK9 as seed ortholog is 99%.

Group of orthologs #810. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.japonica:153

Q75B80              	100.00%		H2VWI4              	100.00%
Bootstrap support for Q75B80 as seed ortholog is 100%.
Bootstrap support for H2VWI4 as seed ortholog is 100%.

Group of orthologs #811. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.japonica:102

Q754W7              	100.00%		H2WGV6              	100.00%
Bootstrap support for Q754W7 as seed ortholog is 100%.
Bootstrap support for H2WGV6 as seed ortholog is 100%.

Group of orthologs #812. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 C.japonica:153

Q75FA8              	100.00%		H2WGD9              	100.00%
Bootstrap support for Q75FA8 as seed ortholog is 100%.
Bootstrap support for H2WGD9 as seed ortholog is 100%.

Group of orthologs #813. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:152

Q756U5              	100.00%		H2VM97              	100.00%
                    	       		K7H339              	23.07%
Bootstrap support for Q756U5 as seed ortholog is 90%.
Bootstrap support for H2VM97 as seed ortholog is 100%.

Group of orthologs #814. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.japonica:67

Q74ZT3              	100.00%		H2WPS9              	100.00%
                    	       		K7HKZ2              	24.39%
Bootstrap support for Q74ZT3 as seed ortholog is 100%.
Bootstrap support for H2WPS9 as seed ortholog is 98%.

Group of orthologs #815. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.japonica:152

Q75AT6              	100.00%		H2WJX2              	100.00%
                    	       		H2VZG2              	32.12%
Bootstrap support for Q75AT6 as seed ortholog is 100%.
Bootstrap support for H2WJX2 as seed ortholog is 100%.

Group of orthologs #816. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.japonica:152

Q750S2              	100.00%		H2VKE4              	100.00%
Bootstrap support for Q750S2 as seed ortholog is 100%.
Bootstrap support for H2VKE4 as seed ortholog is 100%.

Group of orthologs #817. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.japonica:152

Q75DF7              	100.00%		H2VLM1              	100.00%
Bootstrap support for Q75DF7 as seed ortholog is 100%.
Bootstrap support for H2VLM1 as seed ortholog is 100%.

Group of orthologs #818. Best score 152 bits
Score difference with first non-orthologous sequence - A.gossypii:152 C.japonica:152

Q74ZM0              	100.00%		H2WDZ4              	100.00%
Bootstrap support for Q74ZM0 as seed ortholog is 100%.
Bootstrap support for H2WDZ4 as seed ortholog is 100%.

Group of orthologs #819. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.japonica:90

Q759H8              	100.00%		H2W3P7              	100.00%
                    	       		K7HPK5              	26.29%
Bootstrap support for Q759H8 as seed ortholog is 100%.
Bootstrap support for H2W3P7 as seed ortholog is 99%.

Group of orthologs #820. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.japonica:151

Q750N9              	100.00%		H2VN42              	100.00%
Bootstrap support for Q750N9 as seed ortholog is 100%.
Bootstrap support for H2VN42 as seed ortholog is 100%.

Group of orthologs #821. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.japonica:151

Q751N1              	100.00%		H2VTX7              	100.00%
Bootstrap support for Q751N1 as seed ortholog is 100%.
Bootstrap support for H2VTX7 as seed ortholog is 100%.

Group of orthologs #822. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:81

Q75CK2              	100.00%		H2VLB6              	100.00%
Bootstrap support for Q75CK2 as seed ortholog is 96%.
Bootstrap support for H2VLB6 as seed ortholog is 95%.

Group of orthologs #823. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 C.japonica:151

Q75E60              	100.00%		H2VJI0              	100.00%
Bootstrap support for Q75E60 as seed ortholog is 100%.
Bootstrap support for H2VJI0 as seed ortholog is 100%.

Group of orthologs #824. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:95

Q75AV1              	100.00%		H2WM76              	100.00%
Bootstrap support for Q75AV1 as seed ortholog is 100%.
Bootstrap support for H2WM76 as seed ortholog is 99%.

Group of orthologs #825. Best score 150 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.japonica:150

Q754K4              	100.00%		H2VNC3              	100.00%
Bootstrap support for Q754K4 as seed ortholog is 99%.
Bootstrap support for H2VNC3 as seed ortholog is 100%.

Group of orthologs #826. Best score 150 bits
Score difference with first non-orthologous sequence - A.gossypii:150 C.japonica:150

Q750U5              	100.00%		H2W4N8              	100.00%
Bootstrap support for Q750U5 as seed ortholog is 100%.
Bootstrap support for H2W4N8 as seed ortholog is 100%.

Group of orthologs #827. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q752G1              	100.00%		H2WPQ6              	100.00%
                    	       		H2WK80              	31.81%
Bootstrap support for Q752G1 as seed ortholog is 100%.
Bootstrap support for H2WPQ6 as seed ortholog is 100%.

Group of orthologs #828. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q74ZP6              	100.00%		H2WA39              	100.00%
Bootstrap support for Q74ZP6 as seed ortholog is 100%.
Bootstrap support for H2WA39 as seed ortholog is 100%.

Group of orthologs #829. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q75DC3              	100.00%		H2W1Y7              	100.00%
Bootstrap support for Q75DC3 as seed ortholog is 100%.
Bootstrap support for H2W1Y7 as seed ortholog is 100%.

Group of orthologs #830. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q755X7              	100.00%		H2WIP1              	100.00%
Bootstrap support for Q755X7 as seed ortholog is 100%.
Bootstrap support for H2WIP1 as seed ortholog is 100%.

Group of orthologs #831. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q75CR9              	100.00%		H2WC42              	100.00%
Bootstrap support for Q75CR9 as seed ortholog is 100%.
Bootstrap support for H2WC42 as seed ortholog is 100%.

Group of orthologs #832. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q75ES9              	100.00%		H2WNL3              	100.00%
Bootstrap support for Q75ES9 as seed ortholog is 100%.
Bootstrap support for H2WNL3 as seed ortholog is 100%.

Group of orthologs #833. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:104

Q75C33              	100.00%		K7HCA8              	100.00%
Bootstrap support for Q75C33 as seed ortholog is 100%.
Bootstrap support for K7HCA8 as seed ortholog is 99%.

Group of orthologs #834. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 C.japonica:149

Q75EK7              	100.00%		K7H9G6              	100.00%
Bootstrap support for Q75EK7 as seed ortholog is 100%.
Bootstrap support for K7H9G6 as seed ortholog is 100%.

Group of orthologs #835. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.japonica:148

Q757U7              	100.00%		H2WBD8              	100.00%
Bootstrap support for Q757U7 as seed ortholog is 100%.
Bootstrap support for H2WBD8 as seed ortholog is 100%.

Group of orthologs #836. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 C.japonica:148

Q759P8              	100.00%		H2WFJ1              	100.00%
Bootstrap support for Q759P8 as seed ortholog is 100%.
Bootstrap support for H2WFJ1 as seed ortholog is 100%.

Group of orthologs #837. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.japonica:147

Q757V8              	100.00%		H2VTQ6              	100.00%
Bootstrap support for Q757V8 as seed ortholog is 100%.
Bootstrap support for H2VTQ6 as seed ortholog is 100%.

Group of orthologs #838. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.japonica:147

Q756R5              	100.00%		H2W180              	100.00%
Bootstrap support for Q756R5 as seed ortholog is 100%.
Bootstrap support for H2W180 as seed ortholog is 100%.

Group of orthologs #839. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:147 C.japonica:147

Q75CV0              	100.00%		H2WJX3              	100.00%
Bootstrap support for Q75CV0 as seed ortholog is 100%.
Bootstrap support for H2WJX3 as seed ortholog is 100%.

Group of orthologs #840. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q751M1              	100.00%		H2VWE9              	100.00%
                    	       		K7HU94              	100.00%
Bootstrap support for Q751M1 as seed ortholog is 100%.
Bootstrap support for H2VWE9 as seed ortholog is 100%.
Bootstrap support for K7HU94 as seed ortholog is 100%.

Group of orthologs #841. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q751B5              	100.00%		H2VH89              	100.00%
Bootstrap support for Q751B5 as seed ortholog is 100%.
Bootstrap support for H2VH89 as seed ortholog is 100%.

Group of orthologs #842. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q753X8              	100.00%		H2VGY9              	100.00%
Bootstrap support for Q753X8 as seed ortholog is 100%.
Bootstrap support for H2VGY9 as seed ortholog is 100%.

Group of orthologs #843. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:92

Q74ZT7              	100.00%		H2VXW7              	100.00%
Bootstrap support for Q74ZT7 as seed ortholog is 100%.
Bootstrap support for H2VXW7 as seed ortholog is 99%.

Group of orthologs #844. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q75B73              	100.00%		H2W0S3              	100.00%
Bootstrap support for Q75B73 as seed ortholog is 100%.
Bootstrap support for H2W0S3 as seed ortholog is 100%.

Group of orthologs #845. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q756E6              	100.00%		H2W6R8              	100.00%
Bootstrap support for Q756E6 as seed ortholog is 100%.
Bootstrap support for H2W6R8 as seed ortholog is 100%.

Group of orthologs #846. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q75D36              	100.00%		H2WQ59              	100.00%
Bootstrap support for Q75D36 as seed ortholog is 100%.
Bootstrap support for H2WQ59 as seed ortholog is 100%.

Group of orthologs #847. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q75DK2              	100.00%		H2WQY1              	100.00%
Bootstrap support for Q75DK2 as seed ortholog is 100%.
Bootstrap support for H2WQY1 as seed ortholog is 100%.

Group of orthologs #848. Best score 146 bits
Score difference with first non-orthologous sequence - A.gossypii:146 C.japonica:146

Q75ET1              	100.00%		K7GYX3              	100.00%
Bootstrap support for Q75ET1 as seed ortholog is 100%.
Bootstrap support for K7GYX3 as seed ortholog is 100%.

Group of orthologs #849. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:145 C.japonica:145

Q758P1              	100.00%		H2W9Q6              	100.00%
Bootstrap support for Q758P1 as seed ortholog is 100%.
Bootstrap support for H2W9Q6 as seed ortholog is 100%.

Group of orthologs #850. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:145 C.japonica:145

Q75FB4              	100.00%		H2X3P1              	100.00%
Bootstrap support for Q75FB4 as seed ortholog is 100%.
Bootstrap support for H2X3P1 as seed ortholog is 100%.

Group of orthologs #851. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:145 C.japonica:145

Q74ZP9              	100.00%		K7I888              	100.00%
Bootstrap support for Q74ZP9 as seed ortholog is 100%.
Bootstrap support for K7I888 as seed ortholog is 100%.

Group of orthologs #852. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.japonica:77

Q750P2              	100.00%		H2VPW0              	100.00%
Bootstrap support for Q750P2 as seed ortholog is 100%.
Bootstrap support for H2VPW0 as seed ortholog is 93%.

Group of orthologs #853. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.japonica:144

Q751L1              	100.00%		H2W307              	100.00%
Bootstrap support for Q751L1 as seed ortholog is 100%.
Bootstrap support for H2W307 as seed ortholog is 100%.

Group of orthologs #854. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.japonica:144

Q75B51              	100.00%		H2W4R2              	100.00%
Bootstrap support for Q75B51 as seed ortholog is 100%.
Bootstrap support for H2W4R2 as seed ortholog is 100%.

Group of orthologs #855. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 C.japonica:144

Q757P7              	100.00%		H2WFP1              	100.00%
Bootstrap support for Q757P7 as seed ortholog is 100%.
Bootstrap support for H2WFP1 as seed ortholog is 100%.

Group of orthologs #856. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.japonica:143

Q751R6              	100.00%		H2VRN0              	100.00%
                    	       		H2VMT8              	6.67%
Bootstrap support for Q751R6 as seed ortholog is 100%.
Bootstrap support for H2VRN0 as seed ortholog is 100%.

Group of orthologs #857. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.japonica:143

Q75C85              	100.00%		H2WR47              	100.00%
Bootstrap support for Q75C85 as seed ortholog is 100%.
Bootstrap support for H2WR47 as seed ortholog is 100%.

Group of orthologs #858. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 C.japonica:143

Q75D68              	100.00%		H2WVI4              	100.00%
Bootstrap support for Q75D68 as seed ortholog is 100%.
Bootstrap support for H2WVI4 as seed ortholog is 100%.

Group of orthologs #859. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:142

Q757T8              	100.00%		H2W575              	100.00%
Q75EN2              	5.22%		
Bootstrap support for Q757T8 as seed ortholog is 100%.
Bootstrap support for H2W575 as seed ortholog is 100%.

Group of orthologs #860. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:142

Q757U3              	100.00%		K7H7F2              	100.00%
                    	       		H2WA50              	7.63%
Bootstrap support for Q757U3 as seed ortholog is 100%.
Bootstrap support for K7H7F2 as seed ortholog is 100%.

Group of orthologs #861. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:142

Q754M0              	100.00%		H2VGG6              	100.00%
Bootstrap support for Q754M0 as seed ortholog is 100%.
Bootstrap support for H2VGG6 as seed ortholog is 100%.

Group of orthologs #862. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:12 C.japonica:142

Q759W8              	100.00%		H2VNR8              	100.00%
Bootstrap support for Q759W8 as seed ortholog is 62%.
Alternative seed ortholog is Q758Z5 (12 bits away from this cluster)
Bootstrap support for H2VNR8 as seed ortholog is 100%.

Group of orthologs #863. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:142

Q75DG3              	100.00%		H2W0C1              	100.00%
Bootstrap support for Q75DG3 as seed ortholog is 100%.
Bootstrap support for H2W0C1 as seed ortholog is 100%.

Group of orthologs #864. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 C.japonica:142

Q75E34              	100.00%		H2WCM1              	100.00%
Bootstrap support for Q75E34 as seed ortholog is 100%.
Bootstrap support for H2WCM1 as seed ortholog is 100%.

Group of orthologs #865. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.japonica:141

Q75CA7              	100.00%		H2VP27              	100.00%
Bootstrap support for Q75CA7 as seed ortholog is 100%.
Bootstrap support for H2VP27 as seed ortholog is 100%.

Group of orthologs #866. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.japonica:141

Q75AU7              	100.00%		H2VSC1              	100.00%
Bootstrap support for Q75AU7 as seed ortholog is 100%.
Bootstrap support for H2VSC1 as seed ortholog is 100%.

Group of orthologs #867. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 C.japonica:141

Q75EL4              	100.00%		H2W2E2              	100.00%
Bootstrap support for Q75EL4 as seed ortholog is 100%.
Bootstrap support for H2W2E2 as seed ortholog is 100%.

Group of orthologs #868. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:141

Q759U7              	100.00%		H2WBT2              	100.00%
Bootstrap support for Q759U7 as seed ortholog is 88%.
Bootstrap support for H2WBT2 as seed ortholog is 100%.

Group of orthologs #869. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:140 C.japonica:140

Q752A6              	100.00%		K7GY89              	100.00%
Q753L1              	7.92%		
Q751Q3              	6.03%		
Bootstrap support for Q752A6 as seed ortholog is 100%.
Bootstrap support for K7GY89 as seed ortholog is 100%.

Group of orthologs #870. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:140 C.japonica:140

Q751I7              	100.00%		H2VGV2              	100.00%
Bootstrap support for Q751I7 as seed ortholog is 100%.
Bootstrap support for H2VGV2 as seed ortholog is 100%.

Group of orthologs #871. Best score 140 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.japonica:140

Q750E5              	100.00%		H2WGK8              	100.00%
Bootstrap support for Q750E5 as seed ortholog is 98%.
Bootstrap support for H2WGK8 as seed ortholog is 100%.

Group of orthologs #872. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.japonica:139

Q759B3              	100.00%		H2WDC0              	100.00%
                    	       		H2W441              	28.49%
Bootstrap support for Q759B3 as seed ortholog is 100%.
Bootstrap support for H2WDC0 as seed ortholog is 100%.

Group of orthologs #873. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 C.japonica:139

Q751C7              	100.00%		K7HNS5              	100.00%
                    	       		K7I3Y2              	51.10%
Bootstrap support for Q751C7 as seed ortholog is 100%.
Bootstrap support for K7HNS5 as seed ortholog is 100%.

Group of orthologs #874. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:35

Q754Y9              	100.00%		H2WD64              	100.00%
                    	       		H2VR24              	69.43%
                    	       		H2W7P8              	21.24%
Bootstrap support for Q754Y9 as seed ortholog is 100%.
Bootstrap support for H2WD64 as seed ortholog is 90%.

Group of orthologs #875. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:138

Q753B5              	100.00%		H2VX99              	100.00%
Bootstrap support for Q753B5 as seed ortholog is 100%.
Bootstrap support for H2VX99 as seed ortholog is 100%.

Group of orthologs #876. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:138

Q756B7              	100.00%		H2W868              	100.00%
Bootstrap support for Q756B7 as seed ortholog is 100%.
Bootstrap support for H2W868 as seed ortholog is 100%.

Group of orthologs #877. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:138

Q754S7              	100.00%		H2WFT5              	100.00%
Bootstrap support for Q754S7 as seed ortholog is 100%.
Bootstrap support for H2WFT5 as seed ortholog is 100%.

Group of orthologs #878. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:138

Q74ZN0              	100.00%		H2WL94              	100.00%
Bootstrap support for Q74ZN0 as seed ortholog is 100%.
Bootstrap support for H2WL94 as seed ortholog is 100%.

Group of orthologs #879. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:66

Q75C26              	100.00%		H2WK19              	100.00%
Bootstrap support for Q75C26 as seed ortholog is 100%.
Bootstrap support for H2WK19 as seed ortholog is 95%.

Group of orthologs #880. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 C.japonica:138

Q75AK7              	100.00%		H2XCV4              	100.00%
Bootstrap support for Q75AK7 as seed ortholog is 100%.
Bootstrap support for H2XCV4 as seed ortholog is 100%.

Group of orthologs #881. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.japonica:137

Q755P0              	100.00%		H2VP40              	100.00%
Bootstrap support for Q755P0 as seed ortholog is 100%.
Bootstrap support for H2VP40 as seed ortholog is 100%.

Group of orthologs #882. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:137 C.japonica:137

Q750Q2              	100.00%		H2W6N6              	100.00%
Bootstrap support for Q750Q2 as seed ortholog is 100%.
Bootstrap support for H2W6N6 as seed ortholog is 100%.

Group of orthologs #883. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.japonica:136

Q753W6              	100.00%		H2VVB3              	100.00%
                    	       		K7HXA2              	73.21%
                    	       		H2VTH7              	70.02%
                    	       		H2W192              	34.70%
                    	       		K7H3J4              	25.11%
                    	       		K7I4E2              	19.48%
                    	       		K7I567              	17.35%
Bootstrap support for Q753W6 as seed ortholog is 84%.
Bootstrap support for H2VVB3 as seed ortholog is 100%.

Group of orthologs #884. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.japonica:136

Q74Z42              	100.00%		H2VN43              	100.00%
Bootstrap support for Q74Z42 as seed ortholog is 100%.
Bootstrap support for H2VN43 as seed ortholog is 100%.

Group of orthologs #885. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.japonica:48

Q75D55              	100.00%		H2VM77              	100.00%
Bootstrap support for Q75D55 as seed ortholog is 100%.
Bootstrap support for H2VM77 as seed ortholog is 94%.

Group of orthologs #886. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.japonica:136

Q75ER0              	100.00%		H2W1V7              	100.00%
Bootstrap support for Q75ER0 as seed ortholog is 100%.
Bootstrap support for H2W1V7 as seed ortholog is 100%.

Group of orthologs #887. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.japonica:136

Q752J1              	100.00%		H2WHD1              	100.00%
Bootstrap support for Q752J1 as seed ortholog is 100%.
Bootstrap support for H2WHD1 as seed ortholog is 100%.

Group of orthologs #888. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 C.japonica:53

Q750R7              	100.00%		K7HE52              	100.00%
Bootstrap support for Q750R7 as seed ortholog is 100%.
Bootstrap support for K7HE52 as seed ortholog is 93%.

Group of orthologs #889. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.japonica:135

Q752U5              	100.00%		H2W331              	100.00%
Bootstrap support for Q752U5 as seed ortholog is 100%.
Bootstrap support for H2W331 as seed ortholog is 100%.

Group of orthologs #890. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:135 C.japonica:135

Q75AQ8              	100.00%		H2W4X1              	100.00%
Bootstrap support for Q75AQ8 as seed ortholog is 100%.
Bootstrap support for H2W4X1 as seed ortholog is 100%.

Group of orthologs #891. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:59

Q75F71              	100.00%		H2W6D9              	100.00%
Bootstrap support for Q75F71 as seed ortholog is 99%.
Bootstrap support for H2W6D9 as seed ortholog is 99%.

Group of orthologs #892. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:13

Q756U7              	100.00%		K7H1B0              	100.00%
Bootstrap support for Q756U7 as seed ortholog is 99%.
Bootstrap support for K7H1B0 as seed ortholog is 66%.
Alternative seed ortholog is H2W4Y2 (13 bits away from this cluster)

Group of orthologs #893. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.japonica:134

Q74Z62              	100.00%		K7HEX9              	100.00%
                    	       		H2W151              	50.48%
Bootstrap support for Q74Z62 as seed ortholog is 100%.
Bootstrap support for K7HEX9 as seed ortholog is 100%.

Group of orthologs #894. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.japonica:134

Q75BK1              	100.00%		H2VWL1              	100.00%
Bootstrap support for Q75BK1 as seed ortholog is 100%.
Bootstrap support for H2VWL1 as seed ortholog is 100%.

Group of orthologs #895. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.japonica:70

Q75ET3              	100.00%		H2W7U7              	100.00%
Bootstrap support for Q75ET3 as seed ortholog is 100%.
Bootstrap support for H2W7U7 as seed ortholog is 97%.

Group of orthologs #896. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.japonica:66

Q75AC6              	100.00%		H2WP24              	100.00%
Bootstrap support for Q75AC6 as seed ortholog is 93%.
Bootstrap support for H2WP24 as seed ortholog is 96%.

Group of orthologs #897. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 C.japonica:134

Q75EF9              	100.00%		K7HHI0              	100.00%
Bootstrap support for Q75EF9 as seed ortholog is 100%.
Bootstrap support for K7HHI0 as seed ortholog is 100%.

Group of orthologs #898. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:133

Q754J9              	100.00%		H2VK17              	100.00%
Bootstrap support for Q754J9 as seed ortholog is 100%.
Bootstrap support for H2VK17 as seed ortholog is 100%.

Group of orthologs #899. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:133

Q754P8              	100.00%		H2VWF6              	100.00%
Bootstrap support for Q754P8 as seed ortholog is 100%.
Bootstrap support for H2VWF6 as seed ortholog is 100%.

Group of orthologs #900. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:133

Q75DM9              	100.00%		H2W9D4              	100.00%
Bootstrap support for Q75DM9 as seed ortholog is 100%.
Bootstrap support for H2W9D4 as seed ortholog is 100%.

Group of orthologs #901. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:133

Q758N4              	100.00%		H2WQ10              	100.00%
Bootstrap support for Q758N4 as seed ortholog is 100%.
Bootstrap support for H2WQ10 as seed ortholog is 100%.

Group of orthologs #902. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:133

Q75CL7              	100.00%		K7GYL8              	100.00%
Bootstrap support for Q75CL7 as seed ortholog is 100%.
Bootstrap support for K7GYL8 as seed ortholog is 100%.

Group of orthologs #903. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 C.japonica:133

Q75BR4              	100.00%		K7H9Y3              	100.00%
Bootstrap support for Q75BR4 as seed ortholog is 100%.
Bootstrap support for K7H9Y3 as seed ortholog is 100%.

Group of orthologs #904. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.japonica:132

Q75EJ7              	100.00%		H2W8P0              	100.00%
Q754N5              	25.15%		H2VIG7              	56.58%
Bootstrap support for Q75EJ7 as seed ortholog is 100%.
Bootstrap support for H2W8P0 as seed ortholog is 100%.

Group of orthologs #905. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.japonica:132

Q751S0              	100.00%		H2WNK2              	100.00%
Bootstrap support for Q751S0 as seed ortholog is 100%.
Bootstrap support for H2WNK2 as seed ortholog is 100%.

Group of orthologs #906. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 C.japonica:132

Q757P1              	100.00%		K7GUE8              	100.00%
Bootstrap support for Q757P1 as seed ortholog is 100%.
Bootstrap support for K7GUE8 as seed ortholog is 100%.

Group of orthologs #907. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.japonica:6

Q757B7              	100.00%		H2VN30              	100.00%
                    	       		K7IF87              	7.91%
Bootstrap support for Q757B7 as seed ortholog is 100%.
Bootstrap support for H2VN30 as seed ortholog is 60%.
Alternative seed ortholog is K7H276 (6 bits away from this cluster)

Group of orthologs #908. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.japonica:131

Q75CT1              	100.00%		H2VI81              	100.00%
                    	       		K7I335              	47.52%
Bootstrap support for Q75CT1 as seed ortholog is 100%.
Bootstrap support for H2VI81 as seed ortholog is 100%.

Group of orthologs #909. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.japonica:131

Q75BG9              	100.00%		H2WHB0              	100.00%
Bootstrap support for Q75BG9 as seed ortholog is 100%.
Bootstrap support for H2WHB0 as seed ortholog is 100%.

Group of orthologs #910. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 C.japonica:131

Q75EP2              	100.00%		H2WF97              	100.00%
Bootstrap support for Q75EP2 as seed ortholog is 100%.
Bootstrap support for H2WF97 as seed ortholog is 100%.

Group of orthologs #911. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:39

Q75AV8              	100.00%		H2WI80              	100.00%
                    	       		H2WII7              	17.92%
                    	       		H2WQ48              	12.47%
Bootstrap support for Q75AV8 as seed ortholog is 100%.
Bootstrap support for H2WI80 as seed ortholog is 91%.

Group of orthologs #912. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:18

Q75A51              	100.00%		H2VQL8              	100.00%
                    	       		H2VM72              	23.89%
Bootstrap support for Q75A51 as seed ortholog is 100%.
Bootstrap support for H2VQL8 as seed ortholog is 74%.
Alternative seed ortholog is K7GT90 (18 bits away from this cluster)

Group of orthologs #913. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:130

Q753A0              	100.00%		H2VHM3              	100.00%
Bootstrap support for Q753A0 as seed ortholog is 100%.
Bootstrap support for H2VHM3 as seed ortholog is 100%.

Group of orthologs #914. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:130

Q752F0              	100.00%		H2VN22              	100.00%
Bootstrap support for Q752F0 as seed ortholog is 100%.
Bootstrap support for H2VN22 as seed ortholog is 100%.

Group of orthologs #915. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:130

Q759D1              	100.00%		H2VKF8              	100.00%
Bootstrap support for Q759D1 as seed ortholog is 100%.
Bootstrap support for H2VKF8 as seed ortholog is 100%.

Group of orthologs #916. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:130

Q75A17              	100.00%		H2VLB2              	100.00%
Bootstrap support for Q75A17 as seed ortholog is 100%.
Bootstrap support for H2VLB2 as seed ortholog is 100%.

Group of orthologs #917. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 C.japonica:130

Q75EE9              	100.00%		H2WNU6              	100.00%
Bootstrap support for Q75EE9 as seed ortholog is 100%.
Bootstrap support for H2WNU6 as seed ortholog is 100%.

Group of orthologs #918. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:129

Q75A73              	100.00%		H2VPP1              	100.00%
Bootstrap support for Q75A73 as seed ortholog is 91%.
Bootstrap support for H2VPP1 as seed ortholog is 100%.

Group of orthologs #919. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.japonica:129

Q752P7              	100.00%		H2W0K5              	100.00%
Bootstrap support for Q752P7 as seed ortholog is 100%.
Bootstrap support for H2W0K5 as seed ortholog is 100%.

Group of orthologs #920. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 C.japonica:129

Q75DI4              	100.00%		H2VTF9              	100.00%
Bootstrap support for Q75DI4 as seed ortholog is 100%.
Bootstrap support for H2VTF9 as seed ortholog is 100%.

Group of orthologs #921. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.japonica:129

Q74ZJ6              	100.00%		H2WJE2              	100.00%
Bootstrap support for Q74ZJ6 as seed ortholog is 64%.
Alternative seed ortholog is Q756C5 (44 bits away from this cluster)
Bootstrap support for H2WJE2 as seed ortholog is 100%.

Group of orthologs #922. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:25 C.japonica:129

Q75DI7              	100.00%		K7I6J1              	100.00%
Bootstrap support for Q75DI7 as seed ortholog is 82%.
Bootstrap support for K7I6J1 as seed ortholog is 100%.

Group of orthologs #923. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q755A4              	100.00%		H2VWZ2              	100.00%
                    	       		H2WBU1              	35.75%
Bootstrap support for Q755A4 as seed ortholog is 100%.
Bootstrap support for H2VWZ2 as seed ortholog is 100%.

Group of orthologs #924. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q757G6              	100.00%		H2VSZ5              	100.00%
Bootstrap support for Q757G6 as seed ortholog is 100%.
Bootstrap support for H2VSZ5 as seed ortholog is 100%.

Group of orthologs #925. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q75BM3              	100.00%		H2W1I8              	100.00%
Bootstrap support for Q75BM3 as seed ortholog is 100%.
Bootstrap support for H2W1I8 as seed ortholog is 100%.

Group of orthologs #926. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q752H9              	100.00%		H2WD71              	100.00%
Bootstrap support for Q752H9 as seed ortholog is 100%.
Bootstrap support for H2WD71 as seed ortholog is 100%.

Group of orthologs #927. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q751Y7              	100.00%		H2WLP3              	100.00%
Bootstrap support for Q751Y7 as seed ortholog is 100%.
Bootstrap support for H2WLP3 as seed ortholog is 100%.

Group of orthologs #928. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q75AE5              	100.00%		K7I4Y9              	100.00%
Bootstrap support for Q75AE5 as seed ortholog is 100%.
Bootstrap support for K7I4Y9 as seed ortholog is 100%.

Group of orthologs #929. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 C.japonica:128

Q75EW8              	100.00%		K7IBD4              	100.00%
Bootstrap support for Q75EW8 as seed ortholog is 100%.
Bootstrap support for K7IBD4 as seed ortholog is 100%.

Group of orthologs #930. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.japonica:43

Q75A60              	100.00%		H2VHB3              	100.00%
                    	       		K7HW35              	41.91%
                    	       		H2W8L3              	31.12%
Bootstrap support for Q75A60 as seed ortholog is 100%.
Bootstrap support for H2VHB3 as seed ortholog is 91%.

Group of orthologs #931. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.japonica:127

Q750F6              	100.00%		H2VJ88              	100.00%
Bootstrap support for Q750F6 as seed ortholog is 100%.
Bootstrap support for H2VJ88 as seed ortholog is 100%.

Group of orthologs #932. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 C.japonica:127

Q754Z0              	100.00%		H2VZ56              	100.00%
Bootstrap support for Q754Z0 as seed ortholog is 100%.
Bootstrap support for H2VZ56 as seed ortholog is 100%.

Group of orthologs #933. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.japonica:126

Q757D7              	100.00%		H2W250              	100.00%
Bootstrap support for Q757D7 as seed ortholog is 100%.
Bootstrap support for H2W250 as seed ortholog is 100%.

Group of orthologs #934. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.japonica:126

Q750F9              	100.00%		H2WDY6              	100.00%
Bootstrap support for Q750F9 as seed ortholog is 100%.
Bootstrap support for H2WDY6 as seed ortholog is 100%.

Group of orthologs #935. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.japonica:126

Q75CP5              	100.00%		H2W2C1              	100.00%
Bootstrap support for Q75CP5 as seed ortholog is 100%.
Bootstrap support for H2W2C1 as seed ortholog is 100%.

Group of orthologs #936. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 C.japonica:126

Q75AY5              	100.00%		K7H108              	100.00%
Bootstrap support for Q75AY5 as seed ortholog is 100%.
Bootstrap support for K7H108 as seed ortholog is 100%.

Group of orthologs #937. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.japonica:125

Q755Y7              	100.00%		H2WC38              	100.00%
Q75C65              	17.08%		
Bootstrap support for Q755Y7 as seed ortholog is 100%.
Bootstrap support for H2WC38 as seed ortholog is 100%.

Group of orthologs #938. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.japonica:125

Q75DP9              	100.00%		H2WPM4              	100.00%
Bootstrap support for Q75DP9 as seed ortholog is 100%.
Bootstrap support for H2WPM4 as seed ortholog is 100%.

Group of orthologs #939. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 C.japonica:125

Q75BA9              	100.00%		K7GVG0              	100.00%
Bootstrap support for Q75BA9 as seed ortholog is 100%.
Bootstrap support for K7GVG0 as seed ortholog is 100%.

Group of orthologs #940. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:124

Q754Y4              	100.00%		H2VVE8              	100.00%
Bootstrap support for Q754Y4 as seed ortholog is 100%.
Bootstrap support for H2VVE8 as seed ortholog is 100%.

Group of orthologs #941. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:124

Q756V2              	100.00%		H2WHH3              	100.00%
Bootstrap support for Q756V2 as seed ortholog is 100%.
Bootstrap support for H2WHH3 as seed ortholog is 100%.

Group of orthologs #942. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:30

Q757F7              	100.00%		H2WH81              	100.00%
Bootstrap support for Q757F7 as seed ortholog is 99%.
Bootstrap support for H2WH81 as seed ortholog is 93%.

Group of orthologs #943. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:124

Q758A5              	100.00%		H2WHT6              	100.00%
Bootstrap support for Q758A5 as seed ortholog is 100%.
Bootstrap support for H2WHT6 as seed ortholog is 100%.

Group of orthologs #944. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:36

Q755X2              	100.00%		H2WL68              	100.00%
Bootstrap support for Q755X2 as seed ortholog is 100%.
Bootstrap support for H2WL68 as seed ortholog is 97%.

Group of orthologs #945. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:124

Q75DK9              	100.00%		H2WHM2              	100.00%
Bootstrap support for Q75DK9 as seed ortholog is 100%.
Bootstrap support for H2WHM2 as seed ortholog is 100%.

Group of orthologs #946. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 C.japonica:124

Q755Y0              	100.00%		K7GXF5              	100.00%
Bootstrap support for Q755Y0 as seed ortholog is 100%.
Bootstrap support for K7GXF5 as seed ortholog is 100%.

Group of orthologs #947. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.japonica:123

Q753W3              	100.00%		H2VYZ7              	100.00%
                    	       		H2W4J6              	10.54%
Bootstrap support for Q753W3 as seed ortholog is 100%.
Bootstrap support for H2VYZ7 as seed ortholog is 100%.

Group of orthologs #948. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.japonica:34

Q754K8              	100.00%		H2VJ19              	100.00%
Bootstrap support for Q754K8 as seed ortholog is 100%.
Bootstrap support for H2VJ19 as seed ortholog is 95%.

Group of orthologs #949. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.japonica:123

Q759S7              	100.00%		H2VWG8              	100.00%
Bootstrap support for Q759S7 as seed ortholog is 100%.
Bootstrap support for H2VWG8 as seed ortholog is 100%.

Group of orthologs #950. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.japonica:123

Q758A8              	100.00%		H2W8J8              	100.00%
Bootstrap support for Q758A8 as seed ortholog is 100%.
Bootstrap support for H2W8J8 as seed ortholog is 100%.

Group of orthologs #951. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 C.japonica:123

Q756E2              	100.00%		K7HA98              	100.00%
Bootstrap support for Q756E2 as seed ortholog is 100%.
Bootstrap support for K7HA98 as seed ortholog is 100%.

Group of orthologs #952. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:18 C.japonica:36

Q75D99              	100.00%		H2W5G5              	100.00%
Q750T1              	30.21%		H2VR63              	15.37%
Q75D98              	29.90%		K7GW34              	10.21%
Q753I6              	16.47%		
Bootstrap support for Q75D99 as seed ortholog is 72%.
Alternative seed ortholog is Q75EV6 (18 bits away from this cluster)
Bootstrap support for H2W5G5 as seed ortholog is 76%.

Group of orthologs #953. Best score 122 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.japonica:65

Q75DP0              	100.00%		H2VW64              	100.00%
                    	       		H2WAB9              	14.52%
Bootstrap support for Q75DP0 as seed ortholog is 41%.
Alternative seed ortholog is Q751L2 (22 bits away from this cluster)
Bootstrap support for H2VW64 as seed ortholog is 98%.

Group of orthologs #954. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:121

Q75DY8              	100.00%		H2WNN7              	100.00%
                    	       		K7IK47              	100.00%
                    	       		K7HR18              	28.78%
Bootstrap support for Q75DY8 as seed ortholog is 100%.
Bootstrap support for H2WNN7 as seed ortholog is 100%.
Bootstrap support for K7IK47 as seed ortholog is 100%.

Group of orthologs #955. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:25 C.japonica:2

Q751G7              	100.00%		H2W0W5              	100.00%
                    	       		H2X711              	66.28%
Bootstrap support for Q751G7 as seed ortholog is 81%.
Bootstrap support for H2W0W5 as seed ortholog is 51%.
Alternative seed ortholog is H2W6N8 (2 bits away from this cluster)

Group of orthologs #956. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:121

Q752I3              	100.00%		H2W213              	100.00%
                    	       		K7HFR5              	7.33%
Bootstrap support for Q752I3 as seed ortholog is 100%.
Bootstrap support for H2W213 as seed ortholog is 100%.

Group of orthologs #957. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:121

Q758J1              	100.00%		H2VI48              	100.00%
Bootstrap support for Q758J1 as seed ortholog is 100%.
Bootstrap support for H2VI48 as seed ortholog is 100%.

Group of orthologs #958. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:121

Q755J2              	100.00%		H2WEB8              	100.00%
Bootstrap support for Q755J2 as seed ortholog is 100%.
Bootstrap support for H2WEB8 as seed ortholog is 100%.

Group of orthologs #959. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:121

Q759U2              	100.00%		K7H556              	100.00%
Bootstrap support for Q759U2 as seed ortholog is 100%.
Bootstrap support for K7H556 as seed ortholog is 100%.

Group of orthologs #960. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:121

Q75EG8              	100.00%		K7IDI6              	100.00%
Bootstrap support for Q75EG8 as seed ortholog is 100%.
Bootstrap support for K7IDI6 as seed ortholog is 100%.

Group of orthologs #961. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 C.japonica:22

Q75C74              	100.00%		K7IJX0              	100.00%
Bootstrap support for Q75C74 as seed ortholog is 100%.
Bootstrap support for K7IJX0 as seed ortholog is 73%.
Alternative seed ortholog is K7H625 (22 bits away from this cluster)

Group of orthologs #962. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.japonica:120

Q75D63              	100.00%		H2VM21              	100.00%
                    	       		K7GWG1              	42.32%
                    	       		H2WN03              	37.37%
                    	       		K7H3Q0              	18.22%
Bootstrap support for Q75D63 as seed ortholog is 100%.
Bootstrap support for H2VM21 as seed ortholog is 100%.

Group of orthologs #963. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.japonica:120

Q754C5              	100.00%		H2WRF5              	100.00%
Q758U4              	10.59%		H2WB74              	7.61%
Bootstrap support for Q754C5 as seed ortholog is 100%.
Bootstrap support for H2WRF5 as seed ortholog is 100%.

Group of orthologs #964. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.japonica:120

Q75BX4              	100.00%		H2WDD7              	100.00%
                    	       		K7IGP0              	48.96%
Bootstrap support for Q75BX4 as seed ortholog is 100%.
Bootstrap support for H2WDD7 as seed ortholog is 100%.

Group of orthologs #965. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.japonica:120

Q750J5              	100.00%		H2WD89              	100.00%
Bootstrap support for Q750J5 as seed ortholog is 100%.
Bootstrap support for H2WD89 as seed ortholog is 100%.

Group of orthologs #966. Best score 120 bits
Score difference with first non-orthologous sequence - A.gossypii:120 C.japonica:120

Q752B0              	100.00%		K7GTB6              	100.00%
Bootstrap support for Q752B0 as seed ortholog is 100%.
Bootstrap support for K7GTB6 as seed ortholog is 100%.

Group of orthologs #967. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:55

Q75DM0              	100.00%		K7H864              	100.00%
Q75CJ2              	100.00%		H2W337              	100.00%
                    	       		H2WG51              	69.75%
                    	       		H2WLC2              	33.06%
                    	       		H2VGY5              	21.95%
                    	       		H2WLN3              	11.35%
Bootstrap support for Q75DM0 as seed ortholog is 94%.
Bootstrap support for Q75CJ2 as seed ortholog is 80%.
Bootstrap support for K7H864 as seed ortholog is 91%.
Bootstrap support for H2W337 as seed ortholog is 85%.

Group of orthologs #968. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.japonica:40

Q751A9              	100.00%		H2VGA0              	100.00%
                    	       		H2WDW4              	9.25%
                    	       		H2WA88              	5.15%
Bootstrap support for Q751A9 as seed ortholog is 100%.
Bootstrap support for H2VGA0 as seed ortholog is 81%.

Group of orthologs #969. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.japonica:119

Q754I7              	100.00%		H2VT74              	100.00%
Bootstrap support for Q754I7 as seed ortholog is 100%.
Bootstrap support for H2VT74 as seed ortholog is 100%.

Group of orthologs #970. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.japonica:119

Q75C72              	100.00%		H2VS25              	100.00%
Bootstrap support for Q75C72 as seed ortholog is 100%.
Bootstrap support for H2VS25 as seed ortholog is 100%.

Group of orthologs #971. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.japonica:119

Q75C52              	100.00%		H2VVH0              	100.00%
Bootstrap support for Q75C52 as seed ortholog is 100%.
Bootstrap support for H2VVH0 as seed ortholog is 100%.

Group of orthologs #972. Best score 119 bits
Score difference with first non-orthologous sequence - A.gossypii:119 C.japonica:119

Q754U7              	100.00%		H2W4V5              	100.00%
Bootstrap support for Q754U7 as seed ortholog is 100%.
Bootstrap support for H2W4V5 as seed ortholog is 100%.

Group of orthologs #973. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.japonica:118

Q75F86              	100.00%		H2VJ77              	100.00%
Bootstrap support for Q75F86 as seed ortholog is 100%.
Bootstrap support for H2VJ77 as seed ortholog is 100%.

Group of orthologs #974. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:118

Q75DS3              	100.00%		H2VNB9              	100.00%
Bootstrap support for Q75DS3 as seed ortholog is 98%.
Bootstrap support for H2VNB9 as seed ortholog is 100%.

Group of orthologs #975. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.japonica:118

Q74ZC2              	100.00%		K7HCR1              	100.00%
Bootstrap support for Q74ZC2 as seed ortholog is 100%.
Bootstrap support for K7HCR1 as seed ortholog is 100%.

Group of orthologs #976. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 C.japonica:118

Q758M6              	100.00%		K7H205              	100.00%
Bootstrap support for Q758M6 as seed ortholog is 100%.
Bootstrap support for K7H205 as seed ortholog is 100%.

Group of orthologs #977. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.japonica:117

Q75AK5              	100.00%		H2W2I0              	100.00%
                    	       		K7I2S9              	16.50%
Bootstrap support for Q75AK5 as seed ortholog is 100%.
Bootstrap support for H2W2I0 as seed ortholog is 100%.

Group of orthologs #978. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.japonica:117

Q758W6              	100.00%		H2VS56              	100.00%
Bootstrap support for Q758W6 as seed ortholog is 100%.
Bootstrap support for H2VS56 as seed ortholog is 100%.

Group of orthologs #979. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.japonica:117

Q75A75              	100.00%		H2VVN4              	100.00%
Bootstrap support for Q75A75 as seed ortholog is 100%.
Bootstrap support for H2VVN4 as seed ortholog is 100%.

Group of orthologs #980. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.japonica:117

Q752L4              	100.00%		H2WKW9              	100.00%
Bootstrap support for Q752L4 as seed ortholog is 100%.
Bootstrap support for H2WKW9 as seed ortholog is 100%.

Group of orthologs #981. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 C.japonica:63

Q75C23              	100.00%		H2WMB3              	100.00%
Bootstrap support for Q75C23 as seed ortholog is 100%.
Bootstrap support for H2WMB3 as seed ortholog is 95%.

Group of orthologs #982. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.japonica:116

Q75BL0              	100.00%		H2VWT4              	100.00%
Bootstrap support for Q75BL0 as seed ortholog is 100%.
Bootstrap support for H2VWT4 as seed ortholog is 100%.

Group of orthologs #983. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.japonica:116

Q74ZA6              	100.00%		H2WGD3              	100.00%
Bootstrap support for Q74ZA6 as seed ortholog is 100%.
Bootstrap support for H2WGD3 as seed ortholog is 100%.

Group of orthologs #984. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.japonica:116

Q75DI9              	100.00%		H2X6V3              	100.00%
Bootstrap support for Q75DI9 as seed ortholog is 100%.
Bootstrap support for H2X6V3 as seed ortholog is 100%.

Group of orthologs #985. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:116 C.japonica:116

Q756N9              	100.00%		K7H7P7              	100.00%
Bootstrap support for Q756N9 as seed ortholog is 100%.
Bootstrap support for K7H7P7 as seed ortholog is 100%.

Group of orthologs #986. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.japonica:115

E7FHS1              	100.00%		H2VYD8              	100.00%
Bootstrap support for E7FHS1 as seed ortholog is 100%.
Bootstrap support for H2VYD8 as seed ortholog is 100%.

Group of orthologs #987. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.japonica:115

Q753R8              	100.00%		H2VV06              	100.00%
Bootstrap support for Q753R8 as seed ortholog is 100%.
Bootstrap support for H2VV06 as seed ortholog is 100%.

Group of orthologs #988. Best score 115 bits
Score difference with first non-orthologous sequence - A.gossypii:115 C.japonica:115

Q756T5              	100.00%		H2VWV8              	100.00%
Bootstrap support for Q756T5 as seed ortholog is 100%.
Bootstrap support for H2VWV8 as seed ortholog is 100%.

Group of orthologs #989. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:114

Q755V0              	100.00%		H2VP90              	100.00%
                    	       		H2X4G1              	35.32%
Bootstrap support for Q755V0 as seed ortholog is 100%.
Bootstrap support for H2VP90 as seed ortholog is 100%.

Group of orthologs #990. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:114

Q750R5              	100.00%		H2W1U3              	100.00%
                    	       		H2VG36              	27.14%
Bootstrap support for Q750R5 as seed ortholog is 100%.
Bootstrap support for H2W1U3 as seed ortholog is 100%.

Group of orthologs #991. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:21

Q75EH9              	100.00%		H2W9Z5              	100.00%
Q75EI0              	8.83%		
Bootstrap support for Q75EH9 as seed ortholog is 100%.
Bootstrap support for H2W9Z5 as seed ortholog is 76%.

Group of orthologs #992. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:59

Q75CT5              	100.00%		H2WNI5              	100.00%
                    	       		K7GZP9              	37.00%
Bootstrap support for Q75CT5 as seed ortholog is 100%.
Bootstrap support for H2WNI5 as seed ortholog is 91%.

Group of orthologs #993. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:114

Q750U6              	100.00%		H2VPY2              	100.00%
Bootstrap support for Q750U6 as seed ortholog is 100%.
Bootstrap support for H2VPY2 as seed ortholog is 100%.

Group of orthologs #994. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:69

Q75AX6              	100.00%		H2W1Q6              	100.00%
Bootstrap support for Q75AX6 as seed ortholog is 100%.
Bootstrap support for H2W1Q6 as seed ortholog is 98%.

Group of orthologs #995. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 C.japonica:114

Q759U5              	100.00%		H2WG93              	100.00%
Bootstrap support for Q759U5 as seed ortholog is 100%.
Bootstrap support for H2WG93 as seed ortholog is 100%.

Group of orthologs #996. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:113

Q75AL8              	100.00%		H2WD00              	100.00%
Q75AS5              	23.11%		K7H673              	15.83%
Q75AS6              	22.32%		H2WWS6              	13.10%
                    	       		H2W7P4              	10.56%
Bootstrap support for Q75AL8 as seed ortholog is 100%.
Bootstrap support for H2WD00 as seed ortholog is 100%.

Group of orthologs #997. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:49

Q75E33              	100.00%		H2VYQ7              	100.00%
                    	       		H2WNH9              	100.00%
                    	       		H2VHG9              	85.99%
                    	       		H2WQ31              	61.87%
Bootstrap support for Q75E33 as seed ortholog is 100%.
Bootstrap support for H2VYQ7 as seed ortholog is 93%.
Bootstrap support for H2WNH9 as seed ortholog is 94%.

Group of orthologs #998. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:113

Q75EZ3              	100.00%		H2W1C4              	100.00%
                    	       		K7HVR2              	63.08%
Bootstrap support for Q75EZ3 as seed ortholog is 100%.
Bootstrap support for H2W1C4 as seed ortholog is 100%.

Group of orthologs #999. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:113

Q75AT3              	100.00%		K7GZX3              	100.00%
                    	       		K7HN97              	48.19%
Bootstrap support for Q75AT3 as seed ortholog is 100%.
Bootstrap support for K7GZX3 as seed ortholog is 100%.

Group of orthologs #1000. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:113

Q75CQ1              	100.00%		K7H7S3              	100.00%
                    	       		H2VRV1              	15.70%
Bootstrap support for Q75CQ1 as seed ortholog is 100%.
Bootstrap support for K7H7S3 as seed ortholog is 100%.

Group of orthologs #1001. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:113

Q75BQ4              	100.00%		K7GX50              	100.00%
Bootstrap support for Q75BQ4 as seed ortholog is 100%.
Bootstrap support for K7GX50 as seed ortholog is 100%.

Group of orthologs #1002. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 C.japonica:113

Q754Z5              	100.00%		K7IBT1              	100.00%
Bootstrap support for Q754Z5 as seed ortholog is 100%.
Bootstrap support for K7IBT1 as seed ortholog is 100%.

Group of orthologs #1003. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.japonica:112

Q75DA3              	100.00%		H2VPN7              	100.00%
Bootstrap support for Q75DA3 as seed ortholog is 100%.
Bootstrap support for H2VPN7 as seed ortholog is 100%.

Group of orthologs #1004. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.japonica:112

Q74ZL0              	100.00%		H2WHQ5              	100.00%
Bootstrap support for Q74ZL0 as seed ortholog is 100%.
Bootstrap support for H2WHQ5 as seed ortholog is 100%.

Group of orthologs #1005. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 C.japonica:112

Q75A65              	100.00%		H2WEU1              	100.00%
Bootstrap support for Q75A65 as seed ortholog is 100%.
Bootstrap support for H2WEU1 as seed ortholog is 100%.

Group of orthologs #1006. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q75DN1              	100.00%		H2WPH5              	100.00%
                    	       		K7HGT3              	46.00%
Bootstrap support for Q75DN1 as seed ortholog is 100%.
Bootstrap support for H2WPH5 as seed ortholog is 100%.

Group of orthologs #1007. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:69

Q75A56              	100.00%		K7HFR4              	100.00%
                    	       		H2WCW7              	10.85%
Bootstrap support for Q75A56 as seed ortholog is 100%.
Bootstrap support for K7HFR4 as seed ortholog is 99%.

Group of orthologs #1008. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q75AS8              	100.00%		H2VKB0              	100.00%
Bootstrap support for Q75AS8 as seed ortholog is 100%.
Bootstrap support for H2VKB0 as seed ortholog is 100%.

Group of orthologs #1009. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.japonica:111

Q754Z9              	100.00%		H2VTJ4              	100.00%
Bootstrap support for Q754Z9 as seed ortholog is 99%.
Bootstrap support for H2VTJ4 as seed ortholog is 100%.

Group of orthologs #1010. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q750C6              	100.00%		H2W1Y6              	100.00%
Bootstrap support for Q750C6 as seed ortholog is 100%.
Bootstrap support for H2W1Y6 as seed ortholog is 100%.

Group of orthologs #1011. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q752B7              	100.00%		H2W8J9              	100.00%
Bootstrap support for Q752B7 as seed ortholog is 100%.
Bootstrap support for H2W8J9 as seed ortholog is 100%.

Group of orthologs #1012. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q74Z43              	100.00%		H2WFC5              	100.00%
Bootstrap support for Q74Z43 as seed ortholog is 100%.
Bootstrap support for H2WFC5 as seed ortholog is 100%.

Group of orthologs #1013. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q755N5              	100.00%		H2W9X4              	100.00%
Bootstrap support for Q755N5 as seed ortholog is 100%.
Bootstrap support for H2W9X4 as seed ortholog is 100%.

Group of orthologs #1014. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 C.japonica:111

Q753C6              	100.00%		H2WHI9              	100.00%
Bootstrap support for Q753C6 as seed ortholog is 100%.
Bootstrap support for H2WHI9 as seed ortholog is 100%.

Group of orthologs #1015. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.japonica:110

Q751H2              	100.00%		H2VV16              	100.00%
                    	       		H2W535              	29.29%
                    	       		H2VTR1              	7.55%
Bootstrap support for Q751H2 as seed ortholog is 100%.
Bootstrap support for H2VV16 as seed ortholog is 100%.

Group of orthologs #1016. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 C.japonica:110

Q751H4              	100.00%		H2WNX8              	100.00%
Bootstrap support for Q751H4 as seed ortholog is 100%.
Bootstrap support for H2WNX8 as seed ortholog is 100%.

Group of orthologs #1017. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q75CI7              	100.00%		K7H6S3              	100.00%
                    	       		H2WIJ1              	17.57%
                    	       		H2WCB4              	17.05%
                    	       		H2W9D2              	14.94%
                    	       		H2W3E5              	12.30%
Bootstrap support for Q75CI7 as seed ortholog is 100%.
Bootstrap support for K7H6S3 as seed ortholog is 100%.

Group of orthologs #1018. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q752E8              	100.00%		H2VJG9              	100.00%
Q759I8              	31.54%		K7HA21              	33.07%
                    	       		H2WMQ1              	9.65%
Bootstrap support for Q752E8 as seed ortholog is 100%.
Bootstrap support for H2VJG9 as seed ortholog is 100%.

Group of orthologs #1019. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q75BU0              	100.00%		H2VKT8              	100.00%
                    	       		H2WGK4              	37.98%
Bootstrap support for Q75BU0 as seed ortholog is 100%.
Bootstrap support for H2VKT8 as seed ortholog is 100%.

Group of orthologs #1020. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:39 C.japonica:109

Q75AA7              	100.00%		H2VQC3              	100.00%
                    	       		H2WES0              	9.91%
Bootstrap support for Q75AA7 as seed ortholog is 86%.
Bootstrap support for H2VQC3 as seed ortholog is 100%.

Group of orthologs #1021. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q758B8              	100.00%		H2W0H6              	100.00%
                    	       		K7HWX3              	51.44%
Bootstrap support for Q758B8 as seed ortholog is 100%.
Bootstrap support for H2W0H6 as seed ortholog is 100%.

Group of orthologs #1022. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.japonica:109

Q754A7              	100.00%		H2X8X8              	100.00%
                    	       		K7HP36              	45.48%
Bootstrap support for Q754A7 as seed ortholog is 98%.
Bootstrap support for H2X8X8 as seed ortholog is 100%.

Group of orthologs #1023. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q75A81              	100.00%		H2VHD9              	100.00%
Bootstrap support for Q75A81 as seed ortholog is 100%.
Bootstrap support for H2VHD9 as seed ortholog is 100%.

Group of orthologs #1024. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q753F6              	100.00%		H2VVY2              	100.00%
Bootstrap support for Q753F6 as seed ortholog is 100%.
Bootstrap support for H2VVY2 as seed ortholog is 100%.

Group of orthologs #1025. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q74ZD2              	100.00%		H2WB50              	100.00%
Bootstrap support for Q74ZD2 as seed ortholog is 100%.
Bootstrap support for H2WB50 as seed ortholog is 100%.

Group of orthologs #1026. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q752C9              	100.00%		H2W9M7              	100.00%
Bootstrap support for Q752C9 as seed ortholog is 100%.
Bootstrap support for H2W9M7 as seed ortholog is 100%.

Group of orthologs #1027. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q755B4              	100.00%		H2WD18              	100.00%
Bootstrap support for Q755B4 as seed ortholog is 100%.
Bootstrap support for H2WD18 as seed ortholog is 100%.

Group of orthologs #1028. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 C.japonica:109

Q75CP6              	100.00%		H2WR39              	100.00%
Bootstrap support for Q75CP6 as seed ortholog is 100%.
Bootstrap support for H2WR39 as seed ortholog is 100%.

Group of orthologs #1029. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:23

Q75E42              	100.00%		H2VTC5              	100.00%
                    	       		H2WBT8              	7.12%
                    	       		K7GV80              	6.82%
                    	       		H2WH98              	6.21%
                    	       		H2VVI1              	5.45%
                    	       		H2W102              	5.00%
Bootstrap support for Q75E42 as seed ortholog is 100%.
Bootstrap support for H2VTC5 as seed ortholog is 69%.
Alternative seed ortholog is H2WNW0 (23 bits away from this cluster)

Group of orthologs #1030. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q75E17              	100.00%		H2WF41              	100.00%
                    	       		K7I2H2              	28.89%
Bootstrap support for Q75E17 as seed ortholog is 100%.
Bootstrap support for H2WF41 as seed ortholog is 100%.

Group of orthologs #1031. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q75CU9              	100.00%		H2WHD7              	100.00%
                    	       		H2WA41              	21.80%
Bootstrap support for Q75CU9 as seed ortholog is 100%.
Bootstrap support for H2WHD7 as seed ortholog is 100%.

Group of orthologs #1032. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q74Z75              	100.00%		H2VSQ3              	100.00%
Bootstrap support for Q74Z75 as seed ortholog is 100%.
Bootstrap support for H2VSQ3 as seed ortholog is 100%.

Group of orthologs #1033. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:49

Q75DW3              	100.00%		H2VJL2              	100.00%
Bootstrap support for Q75DW3 as seed ortholog is 100%.
Bootstrap support for H2VJL2 as seed ortholog is 93%.

Group of orthologs #1034. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:34

Q759T0              	100.00%		H2VTK8              	100.00%
Bootstrap support for Q759T0 as seed ortholog is 100%.
Bootstrap support for H2VTK8 as seed ortholog is 98%.

Group of orthologs #1035. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q750K3              	100.00%		H2W4W5              	100.00%
Bootstrap support for Q750K3 as seed ortholog is 100%.
Bootstrap support for H2W4W5 as seed ortholog is 100%.

Group of orthologs #1036. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q74ZX9              	100.00%		H2W5T0              	100.00%
Bootstrap support for Q74ZX9 as seed ortholog is 100%.
Bootstrap support for H2W5T0 as seed ortholog is 100%.

Group of orthologs #1037. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q75BV8              	100.00%		H2VTH4              	100.00%
Bootstrap support for Q75BV8 as seed ortholog is 100%.
Bootstrap support for H2VTH4 as seed ortholog is 100%.

Group of orthologs #1038. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:30

Q75A97              	100.00%		H2WE62              	100.00%
Bootstrap support for Q75A97 as seed ortholog is 100%.
Bootstrap support for H2WE62 as seed ortholog is 85%.

Group of orthologs #1039. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q759B9              	100.00%		H2WHN1              	100.00%
Bootstrap support for Q759B9 as seed ortholog is 100%.
Bootstrap support for H2WHN1 as seed ortholog is 100%.

Group of orthologs #1040. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q75C01              	100.00%		H2WGA5              	100.00%
Bootstrap support for Q75C01 as seed ortholog is 100%.
Bootstrap support for H2WGA5 as seed ortholog is 100%.

Group of orthologs #1041. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q75AC0              	100.00%		H2WLL2              	100.00%
Bootstrap support for Q75AC0 as seed ortholog is 100%.
Bootstrap support for H2WLL2 as seed ortholog is 100%.

Group of orthologs #1042. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 C.japonica:108

Q75EG0              	100.00%		K7HBJ3              	100.00%
Bootstrap support for Q75EG0 as seed ortholog is 100%.
Bootstrap support for K7HBJ3 as seed ortholog is 100%.

Group of orthologs #1043. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:57

Q75DG9              	100.00%		H2VH31              	100.00%
                    	       		H2W9X2              	26.35%
Bootstrap support for Q75DG9 as seed ortholog is 100%.
Bootstrap support for H2VH31 as seed ortholog is 63%.
Alternative seed ortholog is K7H078 (57 bits away from this cluster)

Group of orthologs #1044. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:107

Q758T0              	100.00%		H2VLE4              	100.00%
Bootstrap support for Q758T0 as seed ortholog is 100%.
Bootstrap support for H2VLE4 as seed ortholog is 100%.

Group of orthologs #1045. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.japonica:107

Q75CH9              	100.00%		H2VML7              	100.00%
Bootstrap support for Q75CH9 as seed ortholog is 85%.
Bootstrap support for H2VML7 as seed ortholog is 100%.

Group of orthologs #1046. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:107

Q751P0              	100.00%		H2W4C5              	100.00%
Bootstrap support for Q751P0 as seed ortholog is 100%.
Bootstrap support for H2W4C5 as seed ortholog is 100%.

Group of orthologs #1047. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:67

Q75AJ0              	100.00%		H2WFH0              	100.00%
Bootstrap support for Q75AJ0 as seed ortholog is 100%.
Bootstrap support for H2WFH0 as seed ortholog is 99%.

Group of orthologs #1048. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 C.japonica:107

Q755B3              	100.00%		H2XG41              	100.00%
Bootstrap support for Q755B3 as seed ortholog is 100%.
Bootstrap support for H2XG41 as seed ortholog is 100%.

Group of orthologs #1049. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q756N6              	100.00%		H2VYC6              	100.00%
                    	       		K7GTH2              	65.30%
                    	       		K7H1S3              	18.25%
Bootstrap support for Q756N6 as seed ortholog is 100%.
Bootstrap support for H2VYC6 as seed ortholog is 100%.

Group of orthologs #1050. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q756R3              	100.00%		H2VJA8              	100.00%
Bootstrap support for Q756R3 as seed ortholog is 100%.
Bootstrap support for H2VJA8 as seed ortholog is 100%.

Group of orthologs #1051. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q75A14              	100.00%		H2VJJ8              	100.00%
Bootstrap support for Q75A14 as seed ortholog is 100%.
Bootstrap support for H2VJJ8 as seed ortholog is 100%.

Group of orthologs #1052. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q75E02              	100.00%		H2WB58              	100.00%
Bootstrap support for Q75E02 as seed ortholog is 100%.
Bootstrap support for H2WB58 as seed ortholog is 100%.

Group of orthologs #1053. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q759I3              	100.00%		H2WIJ0              	100.00%
Bootstrap support for Q759I3 as seed ortholog is 100%.
Bootstrap support for H2WIJ0 as seed ortholog is 100%.

Group of orthologs #1054. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q74ZA3              	100.00%		K7HYR4              	100.00%
Bootstrap support for Q74ZA3 as seed ortholog is 100%.
Bootstrap support for K7HYR4 as seed ortholog is 100%.

Group of orthologs #1055. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q75AP0              	100.00%		K7I4L9              	100.00%
Bootstrap support for Q75AP0 as seed ortholog is 100%.
Bootstrap support for K7I4L9 as seed ortholog is 100%.

Group of orthologs #1056. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 C.japonica:106

Q75E80              	100.00%		K7IKH1              	100.00%
Bootstrap support for Q75E80 as seed ortholog is 100%.
Bootstrap support for K7IKH1 as seed ortholog is 100%.

Group of orthologs #1057. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:19 C.japonica:105

Q754S6              	100.00%		H2W3S1              	100.00%
                    	       		K7I2B9              	39.20%
Bootstrap support for Q754S6 as seed ortholog is 77%.
Bootstrap support for H2W3S1 as seed ortholog is 100%.

Group of orthologs #1058. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.japonica:105

Q750E4              	100.00%		H2WFV9              	100.00%
Bootstrap support for Q750E4 as seed ortholog is 100%.
Bootstrap support for H2WFV9 as seed ortholog is 100%.

Group of orthologs #1059. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.japonica:105

Q753F5              	100.00%		H2WM36              	100.00%
Bootstrap support for Q753F5 as seed ortholog is 100%.
Bootstrap support for H2WM36 as seed ortholog is 100%.

Group of orthologs #1060. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 C.japonica:43

Q75DL2              	100.00%		K7HBW4              	100.00%
Bootstrap support for Q75DL2 as seed ortholog is 100%.
Bootstrap support for K7HBW4 as seed ortholog is 92%.

Group of orthologs #1061. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q75B64              	100.00%		H2W0R8              	100.00%
                    	       		H2W0D5              	36.31%
                    	       		H2VMK4              	34.23%
Bootstrap support for Q75B64 as seed ortholog is 100%.
Bootstrap support for H2W0R8 as seed ortholog is 100%.

Group of orthologs #1062. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q75A25              	100.00%		H2VGY8              	100.00%
                    	       		K7I273              	19.23%
Bootstrap support for Q75A25 as seed ortholog is 100%.
Bootstrap support for H2VGY8 as seed ortholog is 100%.

Group of orthologs #1063. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q753F4              	100.00%		H2WIC6              	100.00%
                    	       		H2VMB2              	62.79%
Bootstrap support for Q753F4 as seed ortholog is 100%.
Bootstrap support for H2WIC6 as seed ortholog is 100%.

Group of orthologs #1064. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q75A22              	100.00%		H2VR50              	100.00%
Bootstrap support for Q75A22 as seed ortholog is 100%.
Bootstrap support for H2VR50 as seed ortholog is 100%.

Group of orthologs #1065. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q750X7              	100.00%		H2WEV5              	100.00%
Bootstrap support for Q750X7 as seed ortholog is 100%.
Bootstrap support for H2WEV5 as seed ortholog is 100%.

Group of orthologs #1066. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:39

Q75BB7              	100.00%		H2WPT3              	100.00%
Bootstrap support for Q75BB7 as seed ortholog is 100%.
Bootstrap support for H2WPT3 as seed ortholog is 79%.

Group of orthologs #1067. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q75DH5              	100.00%		H2WNZ1              	100.00%
Bootstrap support for Q75DH5 as seed ortholog is 100%.
Bootstrap support for H2WNZ1 as seed ortholog is 100%.

Group of orthologs #1068. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q754Z4              	100.00%		K7H9G0              	100.00%
Bootstrap support for Q754Z4 as seed ortholog is 100%.
Bootstrap support for K7H9G0 as seed ortholog is 100%.

Group of orthologs #1069. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q754Y8              	100.00%		K7HA42              	100.00%
Bootstrap support for Q754Y8 as seed ortholog is 100%.
Bootstrap support for K7HA42 as seed ortholog is 100%.

Group of orthologs #1070. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 C.japonica:104

Q75A02              	100.00%		K7H8J8              	100.00%
Bootstrap support for Q75A02 as seed ortholog is 100%.
Bootstrap support for K7H8J8 as seed ortholog is 100%.

Group of orthologs #1071. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:104

Q75DR1              	100.00%		K7IEA5              	100.00%
Bootstrap support for Q75DR1 as seed ortholog is 95%.
Bootstrap support for K7IEA5 as seed ortholog is 100%.

Group of orthologs #1072. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:103

Q752F2              	100.00%		H2WKW0              	100.00%
Q752I9              	39.38%		K7H4V8              	22.74%
                    	       		H2WKB7              	20.32%
                    	       		H2WSL5              	18.91%
                    	       		H2WI11              	14.29%
                    	       		K7HAC4              	11.87%
                    	       		H2VZB7              	9.26%
                    	       		K7HWN6              	6.24%
Bootstrap support for Q752F2 as seed ortholog is 100%.
Bootstrap support for H2WKW0 as seed ortholog is 100%.

Group of orthologs #1073. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:103

Q75BZ5              	100.00%		K7HWT7              	100.00%
                    	       		H2W5E7              	45.54%
Bootstrap support for Q75BZ5 as seed ortholog is 100%.
Bootstrap support for K7HWT7 as seed ortholog is 100%.

Group of orthologs #1074. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:103

Q750X4              	100.00%		H2W736              	100.00%
Bootstrap support for Q750X4 as seed ortholog is 100%.
Bootstrap support for H2W736 as seed ortholog is 100%.

Group of orthologs #1075. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:24

Q754V1              	100.00%		H2WDI2              	100.00%
Bootstrap support for Q754V1 as seed ortholog is 100%.
Bootstrap support for H2WDI2 as seed ortholog is 84%.

Group of orthologs #1076. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:103

Q752U6              	100.00%		H2WI37              	100.00%
Bootstrap support for Q752U6 as seed ortholog is 100%.
Bootstrap support for H2WI37 as seed ortholog is 100%.

Group of orthologs #1077. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 C.japonica:103

Q75BZ9              	100.00%		H2WNR5              	100.00%
Bootstrap support for Q75BZ9 as seed ortholog is 100%.
Bootstrap support for H2WNR5 as seed ortholog is 100%.

Group of orthologs #1078. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:102

Q75EL9              	100.00%		H2VUV8              	100.00%
                    	       		H2WPN1              	59.39%
Bootstrap support for Q75EL9 as seed ortholog is 100%.
Bootstrap support for H2VUV8 as seed ortholog is 100%.

Group of orthologs #1079. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.japonica:102

Q75C42              	100.00%		K7ILD6              	100.00%
                    	       		K7HG48              	94.27%
Bootstrap support for Q75C42 as seed ortholog is 95%.
Bootstrap support for K7ILD6 as seed ortholog is 100%.

Group of orthologs #1080. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:102

Q755L1              	100.00%		H2W384              	100.00%
Bootstrap support for Q755L1 as seed ortholog is 100%.
Bootstrap support for H2W384 as seed ortholog is 100%.

Group of orthologs #1081. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:102

Q751E3              	100.00%		H2WAP7              	100.00%
Bootstrap support for Q751E3 as seed ortholog is 100%.
Bootstrap support for H2WAP7 as seed ortholog is 100%.

Group of orthologs #1082. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:102

Q75DS4              	100.00%		H2VZ79              	100.00%
Bootstrap support for Q75DS4 as seed ortholog is 100%.
Bootstrap support for H2VZ79 as seed ortholog is 100%.

Group of orthologs #1083. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:102

Q751F6              	100.00%		H2WFT6              	100.00%
Bootstrap support for Q751F6 as seed ortholog is 100%.
Bootstrap support for H2WFT6 as seed ortholog is 100%.

Group of orthologs #1084. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 C.japonica:102

Q75BP1              	100.00%		H2WIB8              	100.00%
Bootstrap support for Q75BP1 as seed ortholog is 100%.
Bootstrap support for H2WIB8 as seed ortholog is 100%.

Group of orthologs #1085. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:101

Q759W0              	100.00%		H2W3F0              	100.00%
                    	       		H2W8H2              	58.06%
                    	       		H2W5C2              	22.95%
                    	       		H2W2K0              	21.45%
                    	       		H2WDJ6              	20.17%
                    	       		K7GZZ9              	19.64%
                    	       		H2WBV8              	18.68%
                    	       		H2WB49              	17.18%
                    	       		H2VV24              	15.58%
                    	       		K7HZH9              	11.21%
Bootstrap support for Q759W0 as seed ortholog is 100%.
Bootstrap support for H2W3F0 as seed ortholog is 100%.

Group of orthologs #1086. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:101

Q757L1              	100.00%		H2VQD4              	100.00%
                    	       		H2WYE8              	38.49%
                    	       		K7H170              	19.46%
Bootstrap support for Q757L1 as seed ortholog is 100%.
Bootstrap support for H2VQD4 as seed ortholog is 100%.

Group of orthologs #1087. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:35

Q757R2              	100.00%		H2W096              	100.00%
                    	       		H2WLP2              	66.38%
Bootstrap support for Q757R2 as seed ortholog is 100%.
Bootstrap support for H2W096 as seed ortholog is 77%.

Group of orthologs #1088. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:101

Q74ZE3              	100.00%		H2VLV4              	100.00%
Bootstrap support for Q74ZE3 as seed ortholog is 100%.
Bootstrap support for H2VLV4 as seed ortholog is 100%.

Group of orthologs #1089. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:101

Q75CK4              	100.00%		H2W6U7              	100.00%
Bootstrap support for Q75CK4 as seed ortholog is 100%.
Bootstrap support for H2W6U7 as seed ortholog is 100%.

Group of orthologs #1090. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:101

Q75DF9              	100.00%		H2W740              	100.00%
Bootstrap support for Q75DF9 as seed ortholog is 100%.
Bootstrap support for H2W740 as seed ortholog is 100%.

Group of orthologs #1091. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 C.japonica:101

Q750F5              	100.00%		H2WP30              	100.00%
Bootstrap support for Q750F5 as seed ortholog is 100%.
Bootstrap support for H2WP30 as seed ortholog is 100%.

Group of orthologs #1092. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:100

Q750E1              	100.00%		H2VG99              	100.00%
Bootstrap support for Q750E1 as seed ortholog is 100%.
Bootstrap support for H2VG99 as seed ortholog is 100%.

Group of orthologs #1093. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:100

Q752Z9              	100.00%		H2VHQ4              	100.00%
Bootstrap support for Q752Z9 as seed ortholog is 100%.
Bootstrap support for H2VHQ4 as seed ortholog is 100%.

Group of orthologs #1094. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:100

Q75A86              	100.00%		H2W577              	100.00%
Bootstrap support for Q75A86 as seed ortholog is 100%.
Bootstrap support for H2W577 as seed ortholog is 100%.

Group of orthologs #1095. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:100

Q757M2              	100.00%		H2WER5              	100.00%
Bootstrap support for Q757M2 as seed ortholog is 100%.
Bootstrap support for H2WER5 as seed ortholog is 100%.

Group of orthologs #1096. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 C.japonica:100

Q75D20              	100.00%		H2WUJ1              	100.00%
Bootstrap support for Q75D20 as seed ortholog is 100%.
Bootstrap support for H2WUJ1 as seed ortholog is 100%.

Group of orthologs #1097. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:99

Q753P0              	100.00%		K7GW64              	100.00%
                    	       		H2WIG2              	6.08%
Bootstrap support for Q753P0 as seed ortholog is 100%.
Bootstrap support for K7GW64 as seed ortholog is 100%.

Group of orthologs #1098. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:50

Q754L9              	100.00%		H2W2N0              	100.00%
Bootstrap support for Q754L9 as seed ortholog is 100%.
Bootstrap support for H2W2N0 as seed ortholog is 99%.

Group of orthologs #1099. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:15

Q755G2              	100.00%		H2W3Q7              	100.00%
Bootstrap support for Q755G2 as seed ortholog is 100%.
Bootstrap support for H2W3Q7 as seed ortholog is 62%.
Alternative seed ortholog is H2VTU3 (15 bits away from this cluster)

Group of orthologs #1100. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:99

Q75DL3              	100.00%		H2W372              	100.00%
Bootstrap support for Q75DL3 as seed ortholog is 100%.
Bootstrap support for H2W372 as seed ortholog is 100%.

Group of orthologs #1101. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:99

Q759V8              	100.00%		H2W9J2              	100.00%
Bootstrap support for Q759V8 as seed ortholog is 100%.
Bootstrap support for H2W9J2 as seed ortholog is 100%.

Group of orthologs #1102. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 C.japonica:99

Q758L8              	100.00%		H2WGB6              	100.00%
Bootstrap support for Q758L8 as seed ortholog is 100%.
Bootstrap support for H2WGB6 as seed ortholog is 100%.

Group of orthologs #1103. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q759M0              	100.00%		H2W2Q1              	100.00%
Q754A9              	16.67%		
Bootstrap support for Q759M0 as seed ortholog is 100%.
Bootstrap support for H2W2Q1 as seed ortholog is 100%.

Group of orthologs #1104. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q750A5              	100.00%		H2WLI0              	100.00%
                    	       		H2WGK1              	5.02%
Bootstrap support for Q750A5 as seed ortholog is 100%.
Bootstrap support for H2WLI0 as seed ortholog is 100%.

Group of orthologs #1105. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q758Y2              	100.00%		H2WU11              	100.00%
                    	       		K7H365              	51.81%
Bootstrap support for Q758Y2 as seed ortholog is 100%.
Bootstrap support for H2WU11 as seed ortholog is 100%.

Group of orthologs #1106. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q751W7              	100.00%		H2VPT7              	100.00%
Bootstrap support for Q751W7 as seed ortholog is 100%.
Bootstrap support for H2VPT7 as seed ortholog is 100%.

Group of orthologs #1107. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:26 C.japonica:16

Q74ZV8              	100.00%		H2VVV1              	100.00%
Bootstrap support for Q74ZV8 as seed ortholog is 76%.
Bootstrap support for H2VVV1 as seed ortholog is 64%.
Alternative seed ortholog is H2WPI3 (16 bits away from this cluster)

Group of orthologs #1108. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q75BL6              	100.00%		H2VQH9              	100.00%
Bootstrap support for Q75BL6 as seed ortholog is 100%.
Bootstrap support for H2VQH9 as seed ortholog is 100%.

Group of orthologs #1109. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q750M6              	100.00%		H2W4J5              	100.00%
Bootstrap support for Q750M6 as seed ortholog is 100%.
Bootstrap support for H2W4J5 as seed ortholog is 100%.

Group of orthologs #1110. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:98

Q750G9              	100.00%		H2WLG5              	100.00%
Bootstrap support for Q750G9 as seed ortholog is 100%.
Bootstrap support for H2WLG5 as seed ortholog is 100%.

Group of orthologs #1111. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:98 C.japonica:23

Q75CB4              	100.00%		K7IEC7              	100.00%
Bootstrap support for Q75CB4 as seed ortholog is 100%.
Bootstrap support for K7IEC7 as seed ortholog is 73%.
Alternative seed ortholog is H2WQT5 (23 bits away from this cluster)

Group of orthologs #1112. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:38 C.japonica:19

Q752L3              	100.00%		H2X9J5              	100.00%
                    	       		H2X0R0              	66.44%
                    	       		K7GU47              	45.41%
                    	       		H2XE80              	33.33%
                    	       		K7HUB4              	18.79%
                    	       		H2W9G2              	8.72%
                    	       		H2W6J1              	5.37%
Bootstrap support for Q752L3 as seed ortholog is 91%.
Bootstrap support for H2X9J5 as seed ortholog is 71%.
Alternative seed ortholog is H2VKC0 (19 bits away from this cluster)

Group of orthologs #1113. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.japonica:97

Q753B6              	100.00%		H2VJ79              	100.00%
Bootstrap support for Q753B6 as seed ortholog is 100%.
Bootstrap support for H2VJ79 as seed ortholog is 100%.

Group of orthologs #1114. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.japonica:21

Q75AT0              	100.00%		H2VTZ3              	100.00%
Bootstrap support for Q75AT0 as seed ortholog is 97%.
Bootstrap support for H2VTZ3 as seed ortholog is 88%.

Group of orthologs #1115. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.japonica:97

Q750P0              	100.00%		H2WIS7              	100.00%
Bootstrap support for Q750P0 as seed ortholog is 100%.
Bootstrap support for H2WIS7 as seed ortholog is 100%.

Group of orthologs #1116. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:35 C.japonica:97

Q75BJ7              	100.00%		H2WNP1              	100.00%
Bootstrap support for Q75BJ7 as seed ortholog is 89%.
Bootstrap support for H2WNP1 as seed ortholog is 100%.

Group of orthologs #1117. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:97 C.japonica:30

Q75CV4              	100.00%		H2WQB5              	100.00%
Bootstrap support for Q75CV4 as seed ortholog is 100%.
Bootstrap support for H2WQB5 as seed ortholog is 98%.

Group of orthologs #1118. Best score 97 bits
Score difference with first non-orthologous sequence - A.gossypii:19 C.japonica:97

Q756R8              	100.00%		K7GUV7              	100.00%
Bootstrap support for Q756R8 as seed ortholog is 80%.
Bootstrap support for K7GUV7 as seed ortholog is 100%.

Group of orthologs #1119. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q751Q4              	100.00%		H2WJF7              	100.00%
Q753U7              	54.59%		H2VHZ0              	12.63%
Bootstrap support for Q751Q4 as seed ortholog is 100%.
Bootstrap support for H2WJF7 as seed ortholog is 100%.

Group of orthologs #1120. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q756W6              	100.00%		H2VI12              	100.00%
Q758H7              	6.17%		
Bootstrap support for Q756W6 as seed ortholog is 100%.
Bootstrap support for H2VI12 as seed ortholog is 100%.

Group of orthologs #1121. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q753F1              	100.00%		H2VG79              	100.00%
Bootstrap support for Q753F1 as seed ortholog is 100%.
Bootstrap support for H2VG79 as seed ortholog is 100%.

Group of orthologs #1122. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q757N0              	100.00%		H2VIQ0              	100.00%
Bootstrap support for Q757N0 as seed ortholog is 100%.
Bootstrap support for H2VIQ0 as seed ortholog is 100%.

Group of orthologs #1123. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q75CF1              	100.00%		H2VGV0              	100.00%
Bootstrap support for Q75CF1 as seed ortholog is 100%.
Bootstrap support for H2VGV0 as seed ortholog is 100%.

Group of orthologs #1124. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q750F1              	100.00%		H2VXJ7              	100.00%
Bootstrap support for Q750F1 as seed ortholog is 100%.
Bootstrap support for H2VXJ7 as seed ortholog is 100%.

Group of orthologs #1125. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:39 C.japonica:40

Q759R2              	100.00%		H2VP23              	100.00%
Bootstrap support for Q759R2 as seed ortholog is 90%.
Bootstrap support for H2VP23 as seed ortholog is 92%.

Group of orthologs #1126. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q759N2              	100.00%		H2VQF8              	100.00%
Bootstrap support for Q759N2 as seed ortholog is 100%.
Bootstrap support for H2VQF8 as seed ortholog is 100%.

Group of orthologs #1127. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:2

Q755N6              	100.00%		H2VZS4              	100.00%
Bootstrap support for Q755N6 as seed ortholog is 100%.
Bootstrap support for H2VZS4 as seed ortholog is 52%.
Alternative seed ortholog is K7IAU8 (2 bits away from this cluster)

Group of orthologs #1128. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q75BI7              	100.00%		H2VZU9              	100.00%
Bootstrap support for Q75BI7 as seed ortholog is 100%.
Bootstrap support for H2VZU9 as seed ortholog is 100%.

Group of orthologs #1129. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q754T0              	100.00%		H2W8Y1              	100.00%
Bootstrap support for Q754T0 as seed ortholog is 100%.
Bootstrap support for H2W8Y1 as seed ortholog is 100%.

Group of orthologs #1130. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q753S5              	100.00%		H2WCC2              	100.00%
Bootstrap support for Q753S5 as seed ortholog is 100%.
Bootstrap support for H2WCC2 as seed ortholog is 100%.

Group of orthologs #1131. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q755A3              	100.00%		K7H668              	100.00%
Bootstrap support for Q755A3 as seed ortholog is 100%.
Bootstrap support for K7H668 as seed ortholog is 100%.

Group of orthologs #1132. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q75A94              	100.00%		K7GZW0              	100.00%
Bootstrap support for Q75A94 as seed ortholog is 100%.
Bootstrap support for K7GZW0 as seed ortholog is 100%.

Group of orthologs #1133. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 C.japonica:96

Q75DJ8              	100.00%		K7HB81              	100.00%
Bootstrap support for Q75DJ8 as seed ortholog is 100%.
Bootstrap support for K7HB81 as seed ortholog is 100%.

Group of orthologs #1134. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.japonica:95

Q750L4              	100.00%		H2WE93              	100.00%
Bootstrap support for Q750L4 as seed ortholog is 100%.
Bootstrap support for H2WE93 as seed ortholog is 100%.

Group of orthologs #1135. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.japonica:95

Q754R8              	100.00%		H2WP95              	100.00%
Bootstrap support for Q754R8 as seed ortholog is 100%.
Bootstrap support for H2WP95 as seed ortholog is 100%.

Group of orthologs #1136. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:95 C.japonica:95

Q752K5              	100.00%		K7HVM6              	100.00%
Bootstrap support for Q752K5 as seed ortholog is 100%.
Bootstrap support for K7HVM6 as seed ortholog is 100%.

Group of orthologs #1137. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.japonica:94

Q754Q7              	100.00%		H2W303              	100.00%
Bootstrap support for Q754Q7 as seed ortholog is 100%.
Bootstrap support for H2W303 as seed ortholog is 100%.

Group of orthologs #1138. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.japonica:94

Q756P4              	100.00%		H2WA83              	100.00%
Bootstrap support for Q756P4 as seed ortholog is 100%.
Bootstrap support for H2WA83 as seed ortholog is 100%.

Group of orthologs #1139. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.japonica:21

Q758D5              	100.00%		H2WM14              	100.00%
Bootstrap support for Q758D5 as seed ortholog is 100%.
Bootstrap support for H2WM14 as seed ortholog is 70%.
Alternative seed ortholog is K7GU40 (21 bits away from this cluster)

Group of orthologs #1140. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 C.japonica:12

Q75DB7              	100.00%		H2WQE5              	100.00%
Bootstrap support for Q75DB7 as seed ortholog is 100%.
Bootstrap support for H2WQE5 as seed ortholog is 72%.
Alternative seed ortholog is H2WNS2 (12 bits away from this cluster)

Group of orthologs #1141. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:93

Q755C8              	100.00%		H2VS73              	100.00%
Bootstrap support for Q755C8 as seed ortholog is 100%.
Bootstrap support for H2VS73 as seed ortholog is 100%.

Group of orthologs #1142. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:93

Q75BQ0              	100.00%		H2W4D3              	100.00%
Bootstrap support for Q75BQ0 as seed ortholog is 100%.
Bootstrap support for H2W4D3 as seed ortholog is 100%.

Group of orthologs #1143. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.japonica:34

Q751A6              	100.00%		H2WG41              	100.00%
Bootstrap support for Q751A6 as seed ortholog is 80%.
Bootstrap support for H2WG41 as seed ortholog is 89%.

Group of orthologs #1144. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:93

Q756E7              	100.00%		H2WDW9              	100.00%
Bootstrap support for Q756E7 as seed ortholog is 100%.
Bootstrap support for H2WDW9 as seed ortholog is 100%.

Group of orthologs #1145. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:93

Q75EU5              	100.00%		H2W6D6              	100.00%
Bootstrap support for Q75EU5 as seed ortholog is 100%.
Bootstrap support for H2W6D6 as seed ortholog is 100%.

Group of orthologs #1146. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:93

Q758Z9              	100.00%		H2WNN4              	100.00%
Bootstrap support for Q758Z9 as seed ortholog is 100%.
Bootstrap support for H2WNN4 as seed ortholog is 100%.

Group of orthologs #1147. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:6 C.japonica:33

Q752A4              	100.00%		K7H7X8              	100.00%
Bootstrap support for Q752A4 as seed ortholog is 60%.
Alternative seed ortholog is Q751J1 (6 bits away from this cluster)
Bootstrap support for K7H7X8 as seed ortholog is 37%.
Alternative seed ortholog is H2WEL4 (33 bits away from this cluster)

Group of orthologs #1148. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:12

Q75CQ0              	100.00%		K7GVU0              	100.00%
Bootstrap support for Q75CQ0 as seed ortholog is 100%.
Bootstrap support for K7GVU0 as seed ortholog is 76%.

Group of orthologs #1149. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 C.japonica:93

Q75AN6              	100.00%		K7HQU6              	100.00%
Bootstrap support for Q75AN6 as seed ortholog is 100%.
Bootstrap support for K7HQU6 as seed ortholog is 100%.

Group of orthologs #1150. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q759K6              	100.00%		K7H1G1              	100.00%
                    	       		H2VL36              	5.53%
Bootstrap support for Q759K6 as seed ortholog is 100%.
Bootstrap support for K7H1G1 as seed ortholog is 100%.

Group of orthologs #1151. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q750Y3              	100.00%		H2VNU0              	100.00%
Bootstrap support for Q750Y3 as seed ortholog is 100%.
Bootstrap support for H2VNU0 as seed ortholog is 100%.

Group of orthologs #1152. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q75AA9              	100.00%		H2VMN0              	100.00%
Bootstrap support for Q75AA9 as seed ortholog is 100%.
Bootstrap support for H2VMN0 as seed ortholog is 100%.

Group of orthologs #1153. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q755I6              	100.00%		H2VUB4              	100.00%
Bootstrap support for Q755I6 as seed ortholog is 100%.
Bootstrap support for H2VUB4 as seed ortholog is 100%.

Group of orthologs #1154. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q753N4              	100.00%		H2VXI5              	100.00%
Bootstrap support for Q753N4 as seed ortholog is 100%.
Bootstrap support for H2VXI5 as seed ortholog is 100%.

Group of orthologs #1155. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q75E91              	100.00%		H2VK30              	100.00%
Bootstrap support for Q75E91 as seed ortholog is 100%.
Bootstrap support for H2VK30 as seed ortholog is 100%.

Group of orthologs #1156. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:22 C.japonica:92

Q75DH6              	100.00%		H2VM41              	100.00%
Bootstrap support for Q75DH6 as seed ortholog is 94%.
Bootstrap support for H2VM41 as seed ortholog is 100%.

Group of orthologs #1157. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q75G38              	100.00%		H2VQB2              	100.00%
Bootstrap support for Q75G38 as seed ortholog is 100%.
Bootstrap support for H2VQB2 as seed ortholog is 100%.

Group of orthologs #1158. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q752W1              	100.00%		H2WEV3              	100.00%
Bootstrap support for Q752W1 as seed ortholog is 100%.
Bootstrap support for H2WEV3 as seed ortholog is 100%.

Group of orthologs #1159. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q74ZE5              	100.00%		H2WIM1              	100.00%
Bootstrap support for Q74ZE5 as seed ortholog is 100%.
Bootstrap support for H2WIM1 as seed ortholog is 100%.

Group of orthologs #1160. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q75CB9              	100.00%		H2W651              	100.00%
Bootstrap support for Q75CB9 as seed ortholog is 100%.
Bootstrap support for H2W651 as seed ortholog is 100%.

Group of orthologs #1161. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q757D9              	100.00%		H2WNE0              	100.00%
Bootstrap support for Q757D9 as seed ortholog is 100%.
Bootstrap support for H2WNE0 as seed ortholog is 100%.

Group of orthologs #1162. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:22

Q752K2              	100.00%		K7GY26              	100.00%
Bootstrap support for Q752K2 as seed ortholog is 100%.
Bootstrap support for K7GY26 as seed ortholog is 71%.
Alternative seed ortholog is H2WF57 (22 bits away from this cluster)

Group of orthologs #1163. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 C.japonica:92

Q75B71              	100.00%		K7GZ40              	100.00%
Bootstrap support for Q75B71 as seed ortholog is 100%.
Bootstrap support for K7GZ40 as seed ortholog is 100%.

Group of orthologs #1164. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:28

Q750T3              	100.00%		H2VTG6              	100.00%
                    	       		H2W8W6              	7.89%
                    	       		H2W7U0              	5.52%
Bootstrap support for Q750T3 as seed ortholog is 100%.
Bootstrap support for H2VTG6 as seed ortholog is 74%.
Alternative seed ortholog is H2WAJ7 (28 bits away from this cluster)

Group of orthologs #1165. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:91

Q750Y9              	100.00%		H2XJB1              	100.00%
                    	       		H2W8V5              	64.84%
Bootstrap support for Q750Y9 as seed ortholog is 100%.
Bootstrap support for H2XJB1 as seed ortholog is 100%.

Group of orthologs #1166. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:91

Q75EH2              	100.00%		H2W997              	100.00%
Bootstrap support for Q75EH2 as seed ortholog is 100%.
Bootstrap support for H2W997 as seed ortholog is 100%.

Group of orthologs #1167. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:91

Q75DT3              	100.00%		H2WAC8              	100.00%
Bootstrap support for Q75DT3 as seed ortholog is 100%.
Bootstrap support for H2WAC8 as seed ortholog is 100%.

Group of orthologs #1168. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:91

Q753Z0              	100.00%		H2X0L0              	100.00%
Bootstrap support for Q753Z0 as seed ortholog is 100%.
Bootstrap support for H2X0L0 as seed ortholog is 100%.

Group of orthologs #1169. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 C.japonica:91

Q750B2              	100.00%		K7I3P8              	100.00%
Bootstrap support for Q750B2 as seed ortholog is 100%.
Bootstrap support for K7I3P8 as seed ortholog is 100%.

Group of orthologs #1170. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:90

Q755F3              	100.00%		H2X2M8              	100.00%
                    	       		K7IEC1              	61.86%
                    	       		K7HU26              	61.55%
                    	       		K7H2T5              	60.91%
Bootstrap support for Q755F3 as seed ortholog is 100%.
Bootstrap support for H2X2M8 as seed ortholog is 100%.

Group of orthologs #1171. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:1

Q75CU2              	100.00%		H2WM71              	100.00%
                    	       		K7H7I2              	24.32%
Bootstrap support for Q75CU2 as seed ortholog is 100%.
Bootstrap support for H2WM71 as seed ortholog is 49%.
Alternative seed ortholog is H2WMU5 (1 bits away from this cluster)

Group of orthologs #1172. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:90

Q759R1              	100.00%		H2VMC5              	100.00%
Bootstrap support for Q759R1 as seed ortholog is 100%.
Bootstrap support for H2VMC5 as seed ortholog is 100%.

Group of orthologs #1173. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:11

Q756F7              	100.00%		H2VSI5              	100.00%
Bootstrap support for Q756F7 as seed ortholog is 100%.
Bootstrap support for H2VSI5 as seed ortholog is 72%.
Alternative seed ortholog is H2X678 (11 bits away from this cluster)

Group of orthologs #1174. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:90

Q752Q9              	100.00%		H2WC97              	100.00%
Bootstrap support for Q752Q9 as seed ortholog is 100%.
Bootstrap support for H2WC97 as seed ortholog is 100%.

Group of orthologs #1175. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 C.japonica:90

Q755C6              	100.00%		H2WPE2              	100.00%
Bootstrap support for Q755C6 as seed ortholog is 100%.
Bootstrap support for H2WPE2 as seed ortholog is 100%.

Group of orthologs #1176. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q75C22              	100.00%		H2VYW3              	100.00%
                    	       		H2WB34              	47.44%
                    	       		H2VLE1              	44.23%
                    	       		H2WTX3              	41.35%
Bootstrap support for Q75C22 as seed ortholog is 100%.
Bootstrap support for H2VYW3 as seed ortholog is 100%.

Group of orthologs #1177. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q74Z77              	100.00%		H2WJE0              	100.00%
                    	       		H2XG52              	92.55%
                    	       		H2WZQ2              	91.58%
                    	       		H2W6T5              	61.42%
Bootstrap support for Q74Z77 as seed ortholog is 100%.
Bootstrap support for H2WJE0 as seed ortholog is 100%.

Group of orthologs #1178. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q758F2              	100.00%		H2VHT5              	100.00%
Q75E23              	26.25%		H2VP80              	19.24%
Bootstrap support for Q758F2 as seed ortholog is 100%.
Bootstrap support for H2VHT5 as seed ortholog is 100%.

Group of orthologs #1179. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q75AW7              	100.00%		H2VH34              	100.00%
                    	       		K7I650              	46.93%
Bootstrap support for Q75AW7 as seed ortholog is 100%.
Bootstrap support for H2VH34 as seed ortholog is 100%.

Group of orthologs #1180. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q756X3              	100.00%		H2W6Z0              	100.00%
Bootstrap support for Q756X3 as seed ortholog is 100%.
Bootstrap support for H2W6Z0 as seed ortholog is 100%.

Group of orthologs #1181. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q752V7              	100.00%		H2WDW8              	100.00%
Bootstrap support for Q752V7 as seed ortholog is 100%.
Bootstrap support for H2WDW8 as seed ortholog is 100%.

Group of orthologs #1182. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q754C9              	100.00%		H2WCN7              	100.00%
Bootstrap support for Q754C9 as seed ortholog is 100%.
Bootstrap support for H2WCN7 as seed ortholog is 100%.

Group of orthologs #1183. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:15

Q75DE1              	100.00%		H2WCD6              	100.00%
Bootstrap support for Q75DE1 as seed ortholog is 100%.
Bootstrap support for H2WCD6 as seed ortholog is 72%.
Alternative seed ortholog is H2VXL7 (15 bits away from this cluster)

Group of orthologs #1184. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 C.japonica:89

Q75BZ3              	100.00%		H2WFM5              	100.00%
Bootstrap support for Q75BZ3 as seed ortholog is 100%.
Bootstrap support for H2WFM5 as seed ortholog is 100%.

Group of orthologs #1185. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.japonica:88

Q75A09              	100.00%		H2VGL7              	100.00%
Bootstrap support for Q75A09 as seed ortholog is 100%.
Bootstrap support for H2VGL7 as seed ortholog is 100%.

Group of orthologs #1186. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.japonica:88

Q75DL1              	100.00%		H2VRD7              	100.00%
Bootstrap support for Q75DL1 as seed ortholog is 100%.
Bootstrap support for H2VRD7 as seed ortholog is 100%.

Group of orthologs #1187. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 C.japonica:88

Q758Y7              	100.00%		H2W584              	100.00%
Bootstrap support for Q758Y7 as seed ortholog is 100%.
Bootstrap support for H2W584 as seed ortholog is 100%.

Group of orthologs #1188. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q75DJ1              	100.00%		H2WJ63              	100.00%
                    	       		K7ICP3              	12.67%
                    	       		K7HGK5              	7.33%
                    	       		K7IJC9              	7.33%
Bootstrap support for Q75DJ1 as seed ortholog is 100%.
Bootstrap support for H2WJ63 as seed ortholog is 100%.

Group of orthologs #1189. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q758R7              	100.00%		H2W3X1              	100.00%
                    	       		H2WA37              	34.45%
Bootstrap support for Q758R7 as seed ortholog is 100%.
Bootstrap support for H2W3X1 as seed ortholog is 100%.

Group of orthologs #1190. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:21

Q75DD9              	100.00%		H2WKE9              	100.00%
                    	       		H2W0D6              	10.21%
Bootstrap support for Q75DD9 as seed ortholog is 100%.
Bootstrap support for H2WKE9 as seed ortholog is 65%.
Alternative seed ortholog is H2VZF0 (21 bits away from this cluster)

Group of orthologs #1191. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q75D70              	100.00%		H2WX80              	100.00%
                    	       		K7IJ00              	45.08%
Bootstrap support for Q75D70 as seed ortholog is 100%.
Bootstrap support for H2WX80 as seed ortholog is 100%.

Group of orthologs #1192. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q751Y1              	100.00%		H2W794              	100.00%
Bootstrap support for Q751Y1 as seed ortholog is 100%.
Bootstrap support for H2W794 as seed ortholog is 100%.

Group of orthologs #1193. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q74ZP5              	100.00%		H2WAS2              	100.00%
Bootstrap support for Q74ZP5 as seed ortholog is 100%.
Bootstrap support for H2WAS2 as seed ortholog is 100%.

Group of orthologs #1194. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q75DI1              	100.00%		H2WL03              	100.00%
Bootstrap support for Q75DI1 as seed ortholog is 100%.
Bootstrap support for H2WL03 as seed ortholog is 100%.

Group of orthologs #1195. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 C.japonica:87

Q75A04              	100.00%		K7H6G5              	100.00%
Bootstrap support for Q75A04 as seed ortholog is 100%.
Bootstrap support for K7H6G5 as seed ortholog is 100%.

Group of orthologs #1196. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:40

Q75F17              	100.00%		H2W663              	100.00%
                    	       		K7HW24              	42.63%
                    	       		H2VSI1              	6.07%
Bootstrap support for Q75F17 as seed ortholog is 100%.
Bootstrap support for H2W663 as seed ortholog is 89%.

Group of orthologs #1197. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:29

Q74ZQ9              	100.00%		H2VR54              	100.00%
Bootstrap support for Q74ZQ9 as seed ortholog is 100%.
Bootstrap support for H2VR54 as seed ortholog is 49%.
Alternative seed ortholog is H2WP72 (29 bits away from this cluster)

Group of orthologs #1198. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:86

Q750R9              	100.00%		H2W1T7              	100.00%
Bootstrap support for Q750R9 as seed ortholog is 100%.
Bootstrap support for H2W1T7 as seed ortholog is 100%.

Group of orthologs #1199. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:86

Q753P6              	100.00%		H2W188              	100.00%
Bootstrap support for Q753P6 as seed ortholog is 100%.
Bootstrap support for H2W188 as seed ortholog is 100%.

Group of orthologs #1200. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:86

Q755F2              	100.00%		H2W7U5              	100.00%
Bootstrap support for Q755F2 as seed ortholog is 100%.
Bootstrap support for H2W7U5 as seed ortholog is 100%.

Group of orthologs #1201. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:86

Q756J2              	100.00%		H2WLL8              	100.00%
Bootstrap support for Q756J2 as seed ortholog is 100%.
Bootstrap support for H2WLL8 as seed ortholog is 100%.

Group of orthologs #1202. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:86

Q75A80              	100.00%		H2WQC9              	100.00%
Bootstrap support for Q75A80 as seed ortholog is 100%.
Bootstrap support for H2WQC9 as seed ortholog is 100%.

Group of orthologs #1203. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 C.japonica:86

Q75B46              	100.00%		H2XDD2              	100.00%
Bootstrap support for Q75B46 as seed ortholog is 100%.
Bootstrap support for H2XDD2 as seed ortholog is 100%.

Group of orthologs #1204. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:85

Q758I0              	100.00%		H2WHA6              	100.00%
                    	       		H2VVW0              	41.44%
                    	       		H2X034              	33.63%
                    	       		H2VSJ6              	21.80%
                    	       		H2VTU0              	8.48%
Bootstrap support for Q758I0 as seed ortholog is 100%.
Bootstrap support for H2WHA6 as seed ortholog is 100%.

Group of orthologs #1205. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:85

Q758J7              	100.00%		H2VUU3              	100.00%
Bootstrap support for Q758J7 as seed ortholog is 100%.
Bootstrap support for H2VUU3 as seed ortholog is 100%.

Group of orthologs #1206. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:3

Q75AY7              	100.00%		H2VSJ5              	100.00%
Bootstrap support for Q75AY7 as seed ortholog is 100%.
Bootstrap support for H2VSJ5 as seed ortholog is 47%.
Alternative seed ortholog is H2WIX8 (3 bits away from this cluster)

Group of orthologs #1207. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:85

Q751F1              	100.00%		H2WBD4              	100.00%
Bootstrap support for Q751F1 as seed ortholog is 100%.
Bootstrap support for H2WBD4 as seed ortholog is 100%.

Group of orthologs #1208. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:85

Q75B24              	100.00%		H2W362              	100.00%
Bootstrap support for Q75B24 as seed ortholog is 100%.
Bootstrap support for H2W362 as seed ortholog is 100%.

Group of orthologs #1209. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:85

Q753B3              	100.00%		H2X3C7              	100.00%
Bootstrap support for Q753B3 as seed ortholog is 100%.
Bootstrap support for H2X3C7 as seed ortholog is 100%.

Group of orthologs #1210. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 C.japonica:85

Q75A35              	100.00%		K7GXA4              	100.00%
Bootstrap support for Q75A35 as seed ortholog is 100%.
Bootstrap support for K7GXA4 as seed ortholog is 100%.

Group of orthologs #1211. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.japonica:84

Q752R3              	100.00%		H2WE67              	100.00%
                    	       		H2W1N3              	32.68%
Bootstrap support for Q752R3 as seed ortholog is 100%.
Bootstrap support for H2WE67 as seed ortholog is 100%.

Group of orthologs #1212. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.japonica:84

Q75B32              	100.00%		H2VRH2              	100.00%
Bootstrap support for Q75B32 as seed ortholog is 100%.
Bootstrap support for H2VRH2 as seed ortholog is 100%.

Group of orthologs #1213. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.japonica:84

Q75DC1              	100.00%		H2VTW6              	100.00%
Bootstrap support for Q75DC1 as seed ortholog is 100%.
Bootstrap support for H2VTW6 as seed ortholog is 100%.

Group of orthologs #1214. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 C.japonica:84

Q75C08              	100.00%		H2W8Q5              	100.00%
Bootstrap support for Q75C08 as seed ortholog is 100%.
Bootstrap support for H2W8Q5 as seed ortholog is 100%.

Group of orthologs #1215. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.japonica:30

Q75DT7              	100.00%		H2VIB7              	100.00%
Bootstrap support for Q75DT7 as seed ortholog is 100%.
Bootstrap support for H2VIB7 as seed ortholog is 89%.

Group of orthologs #1216. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.japonica:83

Q74ZR8              	100.00%		H2VZW3              	100.00%
Bootstrap support for Q74ZR8 as seed ortholog is 100%.
Bootstrap support for H2VZW3 as seed ortholog is 100%.

Group of orthologs #1217. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 C.japonica:83

Q75CE4              	100.00%		H2VQH6              	100.00%
Bootstrap support for Q75CE4 as seed ortholog is 100%.
Bootstrap support for H2VQH6 as seed ortholog is 100%.

Group of orthologs #1218. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q754F0              	100.00%		H2WGT1              	100.00%
                    	       		K7HMG6              	25.43%
Bootstrap support for Q754F0 as seed ortholog is 100%.
Bootstrap support for H2WGT1 as seed ortholog is 100%.

Group of orthologs #1219. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q74Z19              	100.00%		H2VK15              	100.00%
Bootstrap support for Q74Z19 as seed ortholog is 100%.
Bootstrap support for H2VK15 as seed ortholog is 100%.

Group of orthologs #1220. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q755J1              	100.00%		H2VGT1              	100.00%
Bootstrap support for Q755J1 as seed ortholog is 100%.
Bootstrap support for H2VGT1 as seed ortholog is 100%.

Group of orthologs #1221. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q75F50              	100.00%		H2VU04              	100.00%
Bootstrap support for Q75F50 as seed ortholog is 100%.
Bootstrap support for H2VU04 as seed ortholog is 100%.

Group of orthologs #1222. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q75EC5              	100.00%		H2VY16              	100.00%
Bootstrap support for Q75EC5 as seed ortholog is 100%.
Bootstrap support for H2VY16 as seed ortholog is 100%.

Group of orthologs #1223. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q75E18              	100.00%		H2WD13              	100.00%
Bootstrap support for Q75E18 as seed ortholog is 100%.
Bootstrap support for H2WD13 as seed ortholog is 100%.

Group of orthologs #1224. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 C.japonica:82

Q753I5              	100.00%		K7H585              	100.00%
Bootstrap support for Q753I5 as seed ortholog is 100%.
Bootstrap support for K7H585 as seed ortholog is 100%.

Group of orthologs #1225. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:2 C.japonica:81

Q75BU2              	100.00%		H2VKU1              	100.00%
                    	       		K7HIN6              	51.43%
Bootstrap support for Q75BU2 as seed ortholog is 54%.
Alternative seed ortholog is Q756Q1 (2 bits away from this cluster)
Bootstrap support for H2VKU1 as seed ortholog is 100%.

Group of orthologs #1226. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q750R8              	100.00%		H2WCM2              	100.00%
                    	       		K7I4X6              	100.00%
Bootstrap support for Q750R8 as seed ortholog is 100%.
Bootstrap support for H2WCM2 as seed ortholog is 100%.
Bootstrap support for K7I4X6 as seed ortholog is 100%.

Group of orthologs #1227. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q75AQ4              	100.00%		H2VKD4              	100.00%
Bootstrap support for Q75AQ4 as seed ortholog is 100%.
Bootstrap support for H2VKD4 as seed ortholog is 100%.

Group of orthologs #1228. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q75DF1              	100.00%		H2VH06              	100.00%
Bootstrap support for Q75DF1 as seed ortholog is 100%.
Bootstrap support for H2VH06 as seed ortholog is 100%.

Group of orthologs #1229. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q752F5              	100.00%		H2WMH7              	100.00%
Bootstrap support for Q752F5 as seed ortholog is 100%.
Bootstrap support for H2WMH7 as seed ortholog is 100%.

Group of orthologs #1230. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q75BJ0              	100.00%		H2WLS1              	100.00%
Bootstrap support for Q75BJ0 as seed ortholog is 100%.
Bootstrap support for H2WLS1 as seed ortholog is 100%.

Group of orthologs #1231. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q751K8              	100.00%		K7HFA7              	100.00%
Bootstrap support for Q751K8 as seed ortholog is 100%.
Bootstrap support for K7HFA7 as seed ortholog is 100%.

Group of orthologs #1232. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 C.japonica:81

Q75DR5              	100.00%		K7H264              	100.00%
Bootstrap support for Q75DR5 as seed ortholog is 100%.
Bootstrap support for K7H264 as seed ortholog is 100%.

Group of orthologs #1233. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.japonica:80

Q751K2              	100.00%		H2WB43              	100.00%
                    	       		K7HFP4              	83.80%
Bootstrap support for Q751K2 as seed ortholog is 100%.
Bootstrap support for H2WB43 as seed ortholog is 100%.

Group of orthologs #1234. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.japonica:80

Q75CY8              	100.00%		H2VJ21              	100.00%
Bootstrap support for Q75CY8 as seed ortholog is 100%.
Bootstrap support for H2VJ21 as seed ortholog is 100%.

Group of orthologs #1235. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.japonica:80

Q755Q3              	100.00%		H2W029              	100.00%
Bootstrap support for Q755Q3 as seed ortholog is 100%.
Bootstrap support for H2W029 as seed ortholog is 100%.

Group of orthologs #1236. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 C.japonica:80

Q757K3              	100.00%		H2W8E1              	100.00%
Bootstrap support for Q757K3 as seed ortholog is 100%.
Bootstrap support for H2W8E1 as seed ortholog is 100%.

Group of orthologs #1237. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.japonica:79

Q75DN6              	100.00%		H2VT40              	100.00%
                    	       		H2WC04              	28.23%
Bootstrap support for Q75DN6 as seed ortholog is 100%.
Bootstrap support for H2VT40 as seed ortholog is 100%.

Group of orthologs #1238. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.japonica:4

Q750S0              	100.00%		H2VVH5              	100.00%
Bootstrap support for Q750S0 as seed ortholog is 100%.
Bootstrap support for H2VVH5 as seed ortholog is 49%.
Alternative seed ortholog is H2WQG4 (4 bits away from this cluster)

Group of orthologs #1239. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:18 C.japonica:79

Q756B1              	100.00%		H2VSR6              	100.00%
Bootstrap support for Q756B1 as seed ortholog is 70%.
Alternative seed ortholog is Q75C41 (18 bits away from this cluster)
Bootstrap support for H2VSR6 as seed ortholog is 100%.

Group of orthologs #1240. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.japonica:79

Q755H7              	100.00%		H2WB91              	100.00%
Bootstrap support for Q755H7 as seed ortholog is 100%.
Bootstrap support for H2WB91 as seed ortholog is 100%.

Group of orthologs #1241. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.japonica:79

Q75BE9              	100.00%		H2W8S5              	100.00%
Bootstrap support for Q75BE9 as seed ortholog is 100%.
Bootstrap support for H2W8S5 as seed ortholog is 100%.

Group of orthologs #1242. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.japonica:79

Q75BJ4              	100.00%		H2WFU2              	100.00%
Bootstrap support for Q75BJ4 as seed ortholog is 100%.
Bootstrap support for H2WFU2 as seed ortholog is 100%.

Group of orthologs #1243. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 C.japonica:79

Q754L8              	100.00%		H2WP39              	100.00%
Bootstrap support for Q754L8 as seed ortholog is 100%.
Bootstrap support for H2WP39 as seed ortholog is 100%.

Group of orthologs #1244. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.japonica:78

Q754Y2              	100.00%		H2VHN2              	100.00%
                    	       		K7HQH7              	46.01%
Bootstrap support for Q754Y2 as seed ortholog is 100%.
Bootstrap support for H2VHN2 as seed ortholog is 100%.

Group of orthologs #1245. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.japonica:78

Q753W5              	100.00%		K7HDY3              	100.00%
                    	       		K7HXS3              	79.52%
Bootstrap support for Q753W5 as seed ortholog is 100%.
Bootstrap support for K7HDY3 as seed ortholog is 100%.

Group of orthologs #1246. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.japonica:78

Q751R1              	100.00%		H2XHC3              	100.00%
Bootstrap support for Q751R1 as seed ortholog is 100%.
Bootstrap support for H2XHC3 as seed ortholog is 100%.

Group of orthologs #1247. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 C.japonica:78

Q752G7              	100.00%		K7GTW4              	100.00%
Bootstrap support for Q752G7 as seed ortholog is 100%.
Bootstrap support for K7GTW4 as seed ortholog is 100%.

Group of orthologs #1248. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:6

Q755Z4              	100.00%		H2VSR3              	100.00%
                    	       		H2WFB6              	100.00%
                    	       		K7H5T6              	25.72%
                    	       		H2WEJ7              	22.35%
                    	       		K7HT31              	14.63%
                    	       		H2WM18              	6.51%
Bootstrap support for Q755Z4 as seed ortholog is 100%.
Bootstrap support for H2VSR3 as seed ortholog is 59%.
Alternative seed ortholog is H2VKC0 (6 bits away from this cluster)
Bootstrap support for H2WFB6 as seed ortholog is 57%.
Alternative seed ortholog is H2VKC0 (6 bits away from this cluster)

Group of orthologs #1249. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:77

Q75F12              	100.00%		K7GYI3              	100.00%
                    	       		K7H7Y9              	14.58%
                    	       		H2XBD4              	13.95%
Bootstrap support for Q75F12 as seed ortholog is 100%.
Bootstrap support for K7GYI3 as seed ortholog is 100%.

Group of orthologs #1250. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:28

Q75B97              	100.00%		H2VLZ4              	100.00%
Bootstrap support for Q75B97 as seed ortholog is 100%.
Bootstrap support for H2VLZ4 as seed ortholog is 80%.

Group of orthologs #1251. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:77

Q75DR6              	100.00%		H2VJ93              	100.00%
Bootstrap support for Q75DR6 as seed ortholog is 100%.
Bootstrap support for H2VJ93 as seed ortholog is 100%.

Group of orthologs #1252. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:77

Q756Y9              	100.00%		H2W983              	100.00%
Bootstrap support for Q756Y9 as seed ortholog is 100%.
Bootstrap support for H2W983 as seed ortholog is 100%.

Group of orthologs #1253. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:77

Q754J4              	100.00%		H2WFT9              	100.00%
Bootstrap support for Q754J4 as seed ortholog is 100%.
Bootstrap support for H2WFT9 as seed ortholog is 100%.

Group of orthologs #1254. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:77

Q75CX9              	100.00%		H2WH10              	100.00%
Bootstrap support for Q75CX9 as seed ortholog is 100%.
Bootstrap support for H2WH10 as seed ortholog is 100%.

Group of orthologs #1255. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 C.japonica:77

Q75DF4              	100.00%		K7HRZ5              	100.00%
Bootstrap support for Q75DF4 as seed ortholog is 100%.
Bootstrap support for K7HRZ5 as seed ortholog is 100%.

Group of orthologs #1256. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.japonica:76

Q75C86              	100.00%		H2W4P6              	100.00%
                    	       		H2WK73              	32.39%
                    	       		H2VVW4              	29.98%
                    	       		H2W470              	22.64%
                    	       		K7GTE7              	21.49%
                    	       		H2VZJ8              	11.53%
Bootstrap support for Q75C86 as seed ortholog is 100%.
Bootstrap support for H2W4P6 as seed ortholog is 100%.

Group of orthologs #1257. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.japonica:76

Q74ZB6              	100.00%		H2WJK2              	100.00%
                    	       		H2WGJ0              	13.56%
Bootstrap support for Q74ZB6 as seed ortholog is 100%.
Bootstrap support for H2WJK2 as seed ortholog is 100%.

Group of orthologs #1258. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.japonica:76

Q75E13              	100.00%		H2X8S0              	100.00%
                    	       		H2VZ54              	43.75%
Bootstrap support for Q75E13 as seed ortholog is 100%.
Bootstrap support for H2X8S0 as seed ortholog is 100%.

Group of orthologs #1259. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.japonica:76

Q75D11              	100.00%		H2W260              	100.00%
Bootstrap support for Q75D11 as seed ortholog is 100%.
Bootstrap support for H2W260 as seed ortholog is 100%.

Group of orthologs #1260. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:16 C.japonica:29

Q759U0              	100.00%		H2WAT4              	100.00%
Bootstrap support for Q759U0 as seed ortholog is 53%.
Alternative seed ortholog is Q750I9 (16 bits away from this cluster)
Bootstrap support for H2WAT4 as seed ortholog is 51%.
Alternative seed ortholog is K7GTD4 (29 bits away from this cluster)

Group of orthologs #1261. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 C.japonica:76

Q756Q4              	100.00%		H2WLZ4              	100.00%
Bootstrap support for Q756Q4 as seed ortholog is 100%.
Bootstrap support for H2WLZ4 as seed ortholog is 100%.

Group of orthologs #1262. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:75

Q759C2              	100.00%		H2W6L6              	100.00%
                    	       		H2VJN0              	22.92%
Bootstrap support for Q759C2 as seed ortholog is 100%.
Bootstrap support for H2W6L6 as seed ortholog is 100%.

Group of orthologs #1263. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:75

Q74Z17              	100.00%		H2VRT6              	100.00%
Bootstrap support for Q74Z17 as seed ortholog is 100%.
Bootstrap support for H2VRT6 as seed ortholog is 100%.

Group of orthologs #1264. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:75

Q75AK4              	100.00%		H2VP74              	100.00%
Bootstrap support for Q75AK4 as seed ortholog is 100%.
Bootstrap support for H2VP74 as seed ortholog is 100%.

Group of orthologs #1265. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:30

Q75B82              	100.00%		H2VR66              	100.00%
Bootstrap support for Q75B82 as seed ortholog is 100%.
Bootstrap support for H2VR66 as seed ortholog is 92%.

Group of orthologs #1266. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:75

Q756H6              	100.00%		H2W9Y3              	100.00%
Bootstrap support for Q756H6 as seed ortholog is 100%.
Bootstrap support for H2W9Y3 as seed ortholog is 100%.

Group of orthologs #1267. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:75

Q751X8              	100.00%		H2WLI8              	100.00%
Bootstrap support for Q751X8 as seed ortholog is 100%.
Bootstrap support for H2WLI8 as seed ortholog is 100%.

Group of orthologs #1268. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 C.japonica:75

Q75B91              	100.00%		H2WRC7              	100.00%
Bootstrap support for Q75B91 as seed ortholog is 100%.
Bootstrap support for H2WRC7 as seed ortholog is 100%.

Group of orthologs #1269. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:17 C.japonica:9

Q75DB2              	100.00%		H2VL96              	100.00%
Q75CX5              	82.75%		
Q75DB1              	81.25%		
Q75CX6              	67.50%		
Q75BV0              	36.50%		
Bootstrap support for Q75DB2 as seed ortholog is 71%.
Alternative seed ortholog is Q75DF0 (17 bits away from this cluster)
Bootstrap support for H2VL96 as seed ortholog is 59%.
Alternative seed ortholog is H2WEU3 (9 bits away from this cluster)

Group of orthologs #1270. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.japonica:74

Q751L5              	100.00%		H2W7H2              	100.00%
                    	       		H2VGX5              	25.78%
Bootstrap support for Q751L5 as seed ortholog is 100%.
Bootstrap support for H2W7H2 as seed ortholog is 100%.

Group of orthologs #1271. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.japonica:74

Q755K0              	100.00%		H2W3L9              	100.00%
                    	       		K7HYP3              	100.00%
Bootstrap support for Q755K0 as seed ortholog is 100%.
Bootstrap support for H2W3L9 as seed ortholog is 100%.
Bootstrap support for K7HYP3 as seed ortholog is 100%.

Group of orthologs #1272. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.japonica:74

Q755Q7              	100.00%		H2VUY9              	100.00%
Bootstrap support for Q755Q7 as seed ortholog is 100%.
Bootstrap support for H2VUY9 as seed ortholog is 100%.

Group of orthologs #1273. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.japonica:74

Q75CH0              	100.00%		H2VQ67              	100.00%
Bootstrap support for Q75CH0 as seed ortholog is 100%.
Bootstrap support for H2VQ67 as seed ortholog is 100%.

Group of orthologs #1274. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.japonica:74

Q75BW7              	100.00%		H2VT77              	100.00%
Bootstrap support for Q75BW7 as seed ortholog is 100%.
Bootstrap support for H2VT77 as seed ortholog is 100%.

Group of orthologs #1275. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 C.japonica:74

Q752J8              	100.00%		H2WBJ3              	100.00%
Bootstrap support for Q752J8 as seed ortholog is 100%.
Bootstrap support for H2WBJ3 as seed ortholog is 100%.

Group of orthologs #1276. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q75AF9              	100.00%		H2VGC9              	100.00%
                    	       		H2XFQ4              	42.37%
Bootstrap support for Q75AF9 as seed ortholog is 100%.
Bootstrap support for H2VGC9 as seed ortholog is 100%.

Group of orthologs #1277. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q754J0              	100.00%		H2VNX1              	100.00%
                    	       		K7IBL4              	95.90%
Bootstrap support for Q754J0 as seed ortholog is 100%.
Bootstrap support for H2VNX1 as seed ortholog is 100%.

Group of orthologs #1278. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q752R2              	100.00%		H2VLN8              	100.00%
Bootstrap support for Q752R2 as seed ortholog is 100%.
Bootstrap support for H2VLN8 as seed ortholog is 100%.

Group of orthologs #1279. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q753N1              	100.00%		H2VTV0              	100.00%
Bootstrap support for Q753N1 as seed ortholog is 100%.
Bootstrap support for H2VTV0 as seed ortholog is 100%.

Group of orthologs #1280. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q75B38              	100.00%		H2VLE2              	100.00%
Bootstrap support for Q75B38 as seed ortholog is 100%.
Bootstrap support for H2VLE2 as seed ortholog is 100%.

Group of orthologs #1281. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:13

Q75CT7              	100.00%		H2VVR9              	100.00%
Bootstrap support for Q75CT7 as seed ortholog is 100%.
Bootstrap support for H2VVR9 as seed ortholog is 71%.
Alternative seed ortholog is H2VGZ0 (13 bits away from this cluster)

Group of orthologs #1282. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q758N3              	100.00%		H2WA66              	100.00%
Bootstrap support for Q758N3 as seed ortholog is 100%.
Bootstrap support for H2WA66 as seed ortholog is 100%.

Group of orthologs #1283. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q753Y8              	100.00%		H2WR30              	100.00%
Bootstrap support for Q753Y8 as seed ortholog is 100%.
Bootstrap support for H2WR30 as seed ortholog is 100%.

Group of orthologs #1284. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 C.japonica:73

Q75EE3              	100.00%		H2WMH9              	100.00%
Bootstrap support for Q75EE3 as seed ortholog is 100%.
Bootstrap support for H2WMH9 as seed ortholog is 100%.

Group of orthologs #1285. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.japonica:72

Q750J3              	100.00%		H2VQE8              	100.00%
                    	       		H2W4H4              	97.94%
                    	       		K7HIC0              	96.22%
Bootstrap support for Q750J3 as seed ortholog is 100%.
Bootstrap support for H2VQE8 as seed ortholog is 100%.

Group of orthologs #1286. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.japonica:72

Q750C7              	100.00%		H2VQT7              	100.00%
Bootstrap support for Q750C7 as seed ortholog is 100%.
Bootstrap support for H2VQT7 as seed ortholog is 100%.

Group of orthologs #1287. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.japonica:72

Q755T6              	100.00%		H2VZK6              	100.00%
Bootstrap support for Q755T6 as seed ortholog is 100%.
Bootstrap support for H2VZK6 as seed ortholog is 100%.

Group of orthologs #1288. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.japonica:72

Q758M9              	100.00%		H2W8R3              	100.00%
Bootstrap support for Q758M9 as seed ortholog is 100%.
Bootstrap support for H2W8R3 as seed ortholog is 100%.

Group of orthologs #1289. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.japonica:72

Q75F32              	100.00%		H2W522              	100.00%
Bootstrap support for Q75F32 as seed ortholog is 100%.
Bootstrap support for H2W522 as seed ortholog is 100%.

Group of orthologs #1290. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 C.japonica:72

Q75BB9              	100.00%		H2WJS7              	100.00%
Bootstrap support for Q75BB9 as seed ortholog is 100%.
Bootstrap support for H2WJS7 as seed ortholog is 100%.

Group of orthologs #1291. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:22

Q75EU7              	100.00%		H2VIR8              	100.00%
                    	       		H2VH21              	19.06%
                    	       		H2WIQ3              	11.88%
                    	       		H2W430              	10.54%
Bootstrap support for Q75EU7 as seed ortholog is 100%.
Bootstrap support for H2VIR8 as seed ortholog is 38%.
Alternative seed ortholog is K7IGG0 (22 bits away from this cluster)

Group of orthologs #1292. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:71

Q754D0              	100.00%		H2VWK6              	100.00%
Bootstrap support for Q754D0 as seed ortholog is 100%.
Bootstrap support for H2VWK6 as seed ortholog is 100%.

Group of orthologs #1293. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:71

Q75C67              	100.00%		H2VXK9              	100.00%
Bootstrap support for Q75C67 as seed ortholog is 100%.
Bootstrap support for H2VXK9 as seed ortholog is 100%.

Group of orthologs #1294. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:27 C.japonica:71

Q75C54              	100.00%		H2W9B8              	100.00%
Bootstrap support for Q75C54 as seed ortholog is 87%.
Bootstrap support for H2W9B8 as seed ortholog is 100%.

Group of orthologs #1295. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:71

Q757W2              	100.00%		H2WEU9              	100.00%
Bootstrap support for Q757W2 as seed ortholog is 100%.
Bootstrap support for H2WEU9 as seed ortholog is 100%.

Group of orthologs #1296. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:71

Q75BN3              	100.00%		H2WBH8              	100.00%
Bootstrap support for Q75BN3 as seed ortholog is 100%.
Bootstrap support for H2WBH8 as seed ortholog is 100%.

Group of orthologs #1297. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 C.japonica:28

Q754S1              	100.00%		K7H499              	100.00%
Bootstrap support for Q754S1 as seed ortholog is 100%.
Bootstrap support for K7H499 as seed ortholog is 82%.

Group of orthologs #1298. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.japonica:25

Q753Q9              	100.00%		H2WP54              	100.00%
                    	       		H2W7T4              	53.04%
                    	       		H2W249              	48.50%
                    	       		H2W2L7              	45.51%
                    	       		H2W3H1              	44.17%
                    	       		K7H4S5              	29.82%
                    	       		H2W9U6              	27.45%
                    	       		K7I1Z6              	19.20%
                    	       		H2WVW4              	13.93%
                    	       		H2WP56              	6.91%
                    	       		H2WFA6              	5.37%
Bootstrap support for Q753Q9 as seed ortholog is 100%.
Bootstrap support for H2WP54 as seed ortholog is 69%.
Alternative seed ortholog is K7H114 (25 bits away from this cluster)

Group of orthologs #1299. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:26 C.japonica:70

Q75A92              	100.00%		H2W7X1              	100.00%
                    	       		K7HEB5              	65.10%
Bootstrap support for Q75A92 as seed ortholog is 76%.
Bootstrap support for H2W7X1 as seed ortholog is 100%.

Group of orthologs #1300. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.japonica:70

Q75CM1              	100.00%		H2W200              	100.00%
Bootstrap support for Q75CM1 as seed ortholog is 100%.
Bootstrap support for H2W200 as seed ortholog is 100%.

Group of orthologs #1301. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.japonica:11

Q756D0              	100.00%		H2WKG0              	100.00%
Bootstrap support for Q756D0 as seed ortholog is 100%.
Bootstrap support for H2WKG0 as seed ortholog is 56%.
Alternative seed ortholog is K7HD41 (11 bits away from this cluster)

Group of orthologs #1302. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.japonica:70

Q75F04              	100.00%		H2WMK5              	100.00%
Bootstrap support for Q75F04 as seed ortholog is 100%.
Bootstrap support for H2WMK5 as seed ortholog is 100%.

Group of orthologs #1303. Best score 70 bits
Score difference with first non-orthologous sequence - A.gossypii:70 C.japonica:70

Q75AV2              	100.00%		K7GUK6              	100.00%
Bootstrap support for Q75AV2 as seed ortholog is 100%.
Bootstrap support for K7GUK6 as seed ortholog is 100%.

Group of orthologs #1304. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:69

Q75DZ8              	100.00%		H2W962              	100.00%
Q753B4              	25.33%		
Bootstrap support for Q75DZ8 as seed ortholog is 100%.
Bootstrap support for H2W962 as seed ortholog is 100%.

Group of orthologs #1305. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:14

Q753R3              	100.00%		H2VKP6              	100.00%
Bootstrap support for Q753R3 as seed ortholog is 100%.
Bootstrap support for H2VKP6 as seed ortholog is 81%.

Group of orthologs #1306. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:69

Q753Q5              	100.00%		H2W0A9              	100.00%
Bootstrap support for Q753Q5 as seed ortholog is 100%.
Bootstrap support for H2W0A9 as seed ortholog is 100%.

Group of orthologs #1307. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:7

Q75FA9              	100.00%		H2VNP7              	100.00%
Bootstrap support for Q75FA9 as seed ortholog is 100%.
Bootstrap support for H2VNP7 as seed ortholog is 57%.
Alternative seed ortholog is H2WPP2 (7 bits away from this cluster)

Group of orthologs #1308. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:69

Q758W9              	100.00%		H2W948              	100.00%
Bootstrap support for Q758W9 as seed ortholog is 100%.
Bootstrap support for H2W948 as seed ortholog is 100%.

Group of orthologs #1309. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:69

Q75CM9              	100.00%		H2W9Q3              	100.00%
Bootstrap support for Q75CM9 as seed ortholog is 100%.
Bootstrap support for H2W9Q3 as seed ortholog is 100%.

Group of orthologs #1310. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:69

Q74Z49              	100.00%		H2XEP0              	100.00%
Bootstrap support for Q74Z49 as seed ortholog is 100%.
Bootstrap support for H2XEP0 as seed ortholog is 100%.

Group of orthologs #1311. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:69

Q75B92              	100.00%		K7H037              	100.00%
Bootstrap support for Q75B92 as seed ortholog is 100%.
Bootstrap support for K7H037 as seed ortholog is 100%.

Group of orthologs #1312. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 C.japonica:6

Q75CN9              	100.00%		K7IJL1              	100.00%
Bootstrap support for Q75CN9 as seed ortholog is 100%.
Bootstrap support for K7IJL1 as seed ortholog is 60%.
Alternative seed ortholog is K7HB53 (6 bits away from this cluster)

Group of orthologs #1313. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.japonica:68

Q756A6              	100.00%		H2WKI9              	100.00%
                    	       		H2W0Q5              	43.93%
Bootstrap support for Q756A6 as seed ortholog is 100%.
Bootstrap support for H2WKI9 as seed ortholog is 100%.

Group of orthologs #1314. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.japonica:68

Q759P0              	100.00%		K7GY38              	100.00%
                    	       		H2WQQ2              	8.65%
Bootstrap support for Q759P0 as seed ortholog is 100%.
Bootstrap support for K7GY38 as seed ortholog is 100%.

Group of orthologs #1315. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.japonica:68

Q756P9              	100.00%		H2W3W3              	100.00%
Bootstrap support for Q756P9 as seed ortholog is 100%.
Bootstrap support for H2W3W3 as seed ortholog is 100%.

Group of orthologs #1316. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.japonica:68

Q75CN1              	100.00%		H2W6N7              	100.00%
Bootstrap support for Q75CN1 as seed ortholog is 100%.
Bootstrap support for H2W6N7 as seed ortholog is 100%.

Group of orthologs #1317. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.japonica:8

Q755K7              	100.00%		K7H974              	100.00%
Bootstrap support for Q755K7 as seed ortholog is 100%.
Bootstrap support for K7H974 as seed ortholog is 47%.
Alternative seed ortholog is K7HTV1 (8 bits away from this cluster)

Group of orthologs #1318. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 C.japonica:68

Q755X8              	100.00%		K7HI19              	100.00%
Bootstrap support for Q755X8 as seed ortholog is 100%.
Bootstrap support for K7HI19 as seed ortholog is 100%.

Group of orthologs #1319. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q757B0              	100.00%		H2VRL0              	100.00%
                    	       		H2WL21              	16.67%
Bootstrap support for Q757B0 as seed ortholog is 100%.
Bootstrap support for H2VRL0 as seed ortholog is 100%.

Group of orthologs #1320. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q751F9              	100.00%		H2WBF6              	100.00%
                    	       		K7IBK3              	43.43%
Bootstrap support for Q751F9 as seed ortholog is 100%.
Bootstrap support for H2WBF6 as seed ortholog is 100%.

Group of orthologs #1321. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q75DF5              	100.00%		H2WQR4              	100.00%
                    	       		K7HX35              	100.00%
Bootstrap support for Q75DF5 as seed ortholog is 100%.
Bootstrap support for H2WQR4 as seed ortholog is 100%.
Bootstrap support for K7HX35 as seed ortholog is 100%.

Group of orthologs #1322. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q75BK5              	100.00%		K7H6H7              	100.00%
                    	       		H2VTW0              	15.42%
Bootstrap support for Q75BK5 as seed ortholog is 100%.
Bootstrap support for K7H6H7 as seed ortholog is 100%.

Group of orthologs #1323. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:17

Q751W5              	100.00%		H2VKF5              	100.00%
Bootstrap support for Q751W5 as seed ortholog is 100%.
Bootstrap support for H2VKF5 as seed ortholog is 82%.

Group of orthologs #1324. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q757C1              	100.00%		H2VJP5              	100.00%
Bootstrap support for Q757C1 as seed ortholog is 100%.
Bootstrap support for H2VJP5 as seed ortholog is 100%.

Group of orthologs #1325. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:1 C.japonica:67

Q75DM1              	100.00%		H2VXC1              	100.00%
Bootstrap support for Q75DM1 as seed ortholog is 53%.
Alternative seed ortholog is Q750H1 (1 bits away from this cluster)
Bootstrap support for H2VXC1 as seed ortholog is 100%.

Group of orthologs #1326. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q75CR5              	100.00%		H2W3D0              	100.00%
Bootstrap support for Q75CR5 as seed ortholog is 100%.
Bootstrap support for H2W3D0 as seed ortholog is 100%.

Group of orthologs #1327. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q757J6              	100.00%		H2WNA1              	100.00%
Bootstrap support for Q757J6 as seed ortholog is 100%.
Bootstrap support for H2WNA1 as seed ortholog is 100%.

Group of orthologs #1328. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 C.japonica:67

Q75EQ3              	100.00%		H2WLM9              	100.00%
Bootstrap support for Q75EQ3 as seed ortholog is 100%.
Bootstrap support for H2WLM9 as seed ortholog is 100%.

Group of orthologs #1329. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:66

Q755M7              	100.00%		H2VZH7              	100.00%
                    	       		H2W9J1              	73.81%
                    	       		K7I1Y2              	40.87%
                    	       		H2WE59              	27.65%
                    	       		H2WLU0              	23.28%
                    	       		K7HA17              	21.16%
                    	       		H2VHJ8              	16.53%
                    	       		H2VU24              	16.53%
                    	       		H2VZB2              	15.74%
                    	       		H2VMN1              	15.21%
                    	       		K7HEI3              	12.57%
Bootstrap support for Q755M7 as seed ortholog is 100%.
Bootstrap support for H2VZH7 as seed ortholog is 100%.

Group of orthologs #1330. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:3

Q752Y1              	100.00%		H2VXS1              	100.00%
Q755Y2              	5.26%		H2WKW7              	5.00%
Bootstrap support for Q752Y1 as seed ortholog is 100%.
Bootstrap support for H2VXS1 as seed ortholog is 51%.
Alternative seed ortholog is H2VJB0 (3 bits away from this cluster)

Group of orthologs #1331. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:16 C.japonica:66

Q75B19              	100.00%		K7I978              	100.00%
                    	       		H2WIS3              	58.69%
Bootstrap support for Q75B19 as seed ortholog is 67%.
Alternative seed ortholog is Q74ZB5 (16 bits away from this cluster)
Bootstrap support for K7I978 as seed ortholog is 100%.

Group of orthologs #1332. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:66

Q753X6              	100.00%		H2VYX5              	100.00%
Bootstrap support for Q753X6 as seed ortholog is 100%.
Bootstrap support for H2VYX5 as seed ortholog is 100%.

Group of orthologs #1333. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:66

Q750U3              	100.00%		H2WK02              	100.00%
Bootstrap support for Q750U3 as seed ortholog is 100%.
Bootstrap support for H2WK02 as seed ortholog is 100%.

Group of orthologs #1334. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:66

Q759J6              	100.00%		H2WKJ7              	100.00%
Bootstrap support for Q759J6 as seed ortholog is 100%.
Bootstrap support for H2WKJ7 as seed ortholog is 100%.

Group of orthologs #1335. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:66

Q75D12              	100.00%		H2WGP6              	100.00%
Bootstrap support for Q75D12 as seed ortholog is 100%.
Bootstrap support for H2WGP6 as seed ortholog is 100%.

Group of orthologs #1336. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 C.japonica:66

Q74ZF9              	100.00%		K7H5R3              	100.00%
Bootstrap support for Q74ZF9 as seed ortholog is 100%.
Bootstrap support for K7H5R3 as seed ortholog is 100%.

Group of orthologs #1337. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:65

Q75F24              	100.00%		H2XDJ8              	100.00%
                    	       		H2WCL0              	52.21%
                    	       		H2W5Q7              	35.06%
                    	       		H2VHS9              	34.32%
                    	       		H2VJA9              	19.56%
                    	       		H2WIC9              	5.54%
Bootstrap support for Q75F24 as seed ortholog is 100%.
Bootstrap support for H2XDJ8 as seed ortholog is 100%.

Group of orthologs #1338. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:6

Q753F2              	100.00%		H2WAR0              	100.00%
Q75AB2              	8.17%		
Bootstrap support for Q753F2 as seed ortholog is 100%.
Bootstrap support for H2WAR0 as seed ortholog is 53%.
Alternative seed ortholog is H2VX51 (6 bits away from this cluster)

Group of orthologs #1339. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:65

Q758I6              	100.00%		H2WLW8              	100.00%
                    	       		K7I682              	22.69%
Bootstrap support for Q758I6 as seed ortholog is 100%.
Bootstrap support for H2WLW8 as seed ortholog is 100%.

Group of orthologs #1340. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:65

Q75CV6              	100.00%		H2WP13              	100.00%
                    	       		K7I9P3              	38.70%
Bootstrap support for Q75CV6 as seed ortholog is 100%.
Bootstrap support for H2WP13 as seed ortholog is 100%.

Group of orthologs #1341. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:65

Q753A7              	100.00%		H2WAI7              	100.00%
Bootstrap support for Q753A7 as seed ortholog is 100%.
Bootstrap support for H2WAI7 as seed ortholog is 100%.

Group of orthologs #1342. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:65

Q75EY3              	100.00%		H2WR40              	100.00%
Bootstrap support for Q75EY3 as seed ortholog is 100%.
Bootstrap support for H2WR40 as seed ortholog is 100%.

Group of orthologs #1343. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 C.japonica:23

Q75AB4              	100.00%		K7GY87              	100.00%
Bootstrap support for Q75AB4 as seed ortholog is 100%.
Bootstrap support for K7GY87 as seed ortholog is 79%.

Group of orthologs #1344. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q75DI2              	100.00%		K7H238              	100.00%
                    	       		K7HI28              	51.94%
Bootstrap support for Q75DI2 as seed ortholog is 100%.
Bootstrap support for K7H238 as seed ortholog is 100%.

Group of orthologs #1345. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q754T8              	100.00%		K7IG92              	100.00%
                    	       		H2VPY1              	59.53%
Bootstrap support for Q754T8 as seed ortholog is 100%.
Bootstrap support for K7IG92 as seed ortholog is 100%.

Group of orthologs #1346. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q74ZD0              	100.00%		H2VR21              	100.00%
Bootstrap support for Q74ZD0 as seed ortholog is 100%.
Bootstrap support for H2VR21 as seed ortholog is 100%.

Group of orthologs #1347. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q75CS8              	100.00%		H2VWV1              	100.00%
Bootstrap support for Q75CS8 as seed ortholog is 100%.
Bootstrap support for H2VWV1 as seed ortholog is 100%.

Group of orthologs #1348. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:21 C.japonica:64

Q759W7              	100.00%		H2W202              	100.00%
Bootstrap support for Q759W7 as seed ortholog is 92%.
Bootstrap support for H2W202 as seed ortholog is 100%.

Group of orthologs #1349. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q75BR7              	100.00%		H2WMM9              	100.00%
Bootstrap support for Q75BR7 as seed ortholog is 100%.
Bootstrap support for H2WMM9 as seed ortholog is 100%.

Group of orthologs #1350. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:3 C.japonica:64

Q755V5              	100.00%		K7GTT8              	100.00%
Bootstrap support for Q755V5 as seed ortholog is 53%.
Alternative seed ortholog is Q756D7 (3 bits away from this cluster)
Bootstrap support for K7GTT8 as seed ortholog is 100%.

Group of orthologs #1351. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q75C43              	100.00%		K7H3J8              	100.00%
Bootstrap support for Q75C43 as seed ortholog is 100%.
Bootstrap support for K7H3J8 as seed ortholog is 100%.

Group of orthologs #1352. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 C.japonica:64

Q75CU5              	100.00%		K7IEK5              	100.00%
Bootstrap support for Q75CU5 as seed ortholog is 100%.
Bootstrap support for K7IEK5 as seed ortholog is 100%.

Group of orthologs #1353. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.japonica:63

Q752I4              	100.00%		H2WN46              	100.00%
Bootstrap support for Q752I4 as seed ortholog is 100%.
Bootstrap support for H2WN46 as seed ortholog is 100%.

Group of orthologs #1354. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 C.japonica:63

Q758G8              	100.00%		K7H705              	100.00%
Bootstrap support for Q758G8 as seed ortholog is 100%.
Bootstrap support for K7H705 as seed ortholog is 100%.

Group of orthologs #1355. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:13 C.japonica:62

Q75DK1              	100.00%		H2WCE3              	100.00%
                    	       		H2WQW8              	16.79%
                    	       		H2VX47              	9.03%
                    	       		H2WPL8              	5.09%
Bootstrap support for Q75DK1 as seed ortholog is 64%.
Alternative seed ortholog is Q752B5 (13 bits away from this cluster)
Bootstrap support for H2WCE3 as seed ortholog is 100%.

Group of orthologs #1356. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:62

Q755N3              	100.00%		H2W3M3              	100.00%
                    	       		K7IHE0              	100.00%
Bootstrap support for Q755N3 as seed ortholog is 100%.
Bootstrap support for H2W3M3 as seed ortholog is 100%.
Bootstrap support for K7IHE0 as seed ortholog is 100%.

Group of orthologs #1357. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:62

Q75F60              	100.00%		H2W9W8              	100.00%
                    	       		K7I595              	56.29%
Bootstrap support for Q75F60 as seed ortholog is 100%.
Bootstrap support for H2W9W8 as seed ortholog is 100%.

Group of orthologs #1358. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:62

Q752S2              	100.00%		H2VXH9              	100.00%
Bootstrap support for Q752S2 as seed ortholog is 100%.
Bootstrap support for H2VXH9 as seed ortholog is 100%.

Group of orthologs #1359. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:62

Q755K2              	100.00%		H2W1W1              	100.00%
Bootstrap support for Q755K2 as seed ortholog is 100%.
Bootstrap support for H2W1W1 as seed ortholog is 100%.

Group of orthologs #1360. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:62

Q754Q6              	100.00%		H2WB54              	100.00%
Bootstrap support for Q754Q6 as seed ortholog is 100%.
Bootstrap support for H2WB54 as seed ortholog is 100%.

Group of orthologs #1361. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:12

Q750D9              	100.00%		K7HI20              	100.00%
Bootstrap support for Q750D9 as seed ortholog is 100%.
Bootstrap support for K7HI20 as seed ortholog is 65%.
Alternative seed ortholog is H2VNT7 (12 bits away from this cluster)

Group of orthologs #1362. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 C.japonica:62

Q75BA0              	100.00%		K7H9H8              	100.00%
Bootstrap support for Q75BA0 as seed ortholog is 100%.
Bootstrap support for K7H9H8 as seed ortholog is 100%.

Group of orthologs #1363. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.japonica:61

Q75E92              	100.00%		H2W6Z3              	100.00%
Bootstrap support for Q75E92 as seed ortholog is 100%.
Bootstrap support for H2W6Z3 as seed ortholog is 100%.

Group of orthologs #1364. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.japonica:61

Q752T0              	100.00%		K7GT82              	100.00%
Bootstrap support for Q752T0 as seed ortholog is 100%.
Bootstrap support for K7GT82 as seed ortholog is 100%.

Group of orthologs #1365. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.japonica:61

Q750Z4              	100.00%		K7H9E1              	100.00%
Bootstrap support for Q750Z4 as seed ortholog is 100%.
Bootstrap support for K7H9E1 as seed ortholog is 100%.

Group of orthologs #1366. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 C.japonica:61

Q757L0              	100.00%		K7I5D9              	100.00%
Bootstrap support for Q757L0 as seed ortholog is 100%.
Bootstrap support for K7I5D9 as seed ortholog is 100%.

Group of orthologs #1367. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.japonica:60

Q74ZU0              	100.00%		H2VXH7              	100.00%
                    	       		K7H6V7              	73.75%
                    	       		H2W7H4              	47.50%
                    	       		K7H671              	44.08%
                    	       		K7HAP1              	43.02%
                    	       		K7ILN3              	38.09%
                    	       		H2X5T1              	36.80%
                    	       		H2VWM7              	32.93%
                    	       		K7GYV0              	32.55%
                    	       		H2WCP1              	26.25%
                    	       		H2VSU4              	20.94%
                    	       		K7HA43              	18.06%
                    	       		K7HPY8              	17.60%
                    	       		K7HC05              	13.73%
                    	       		H2VK92              	11.99%
                    	       		H2VPQ4              	11.68%
                    	       		K7IFB3              	10.47%
                    	       		H2VT51              	9.48%
                    	       		H2WM99              	9.48%
                    	       		K7H3X9              	9.48%
                    	       		K7IAD3              	9.18%
                    	       		H2VIA5              	8.57%
                    	       		H2X2F3              	5.16%
Bootstrap support for Q74ZU0 as seed ortholog is 100%.
Bootstrap support for H2VXH7 as seed ortholog is 100%.

Group of orthologs #1368. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.japonica:60

Q75CP1              	100.00%		H2VXS8              	100.00%
                    	       		H2VPD9              	15.26%
                    	       		H2WB53              	10.48%
Bootstrap support for Q75CP1 as seed ortholog is 100%.
Bootstrap support for H2VXS8 as seed ortholog is 100%.

Group of orthologs #1369. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.japonica:60

Q75AA5              	100.00%		H2W1Y5              	100.00%
Bootstrap support for Q75AA5 as seed ortholog is 100%.
Bootstrap support for H2W1Y5 as seed ortholog is 100%.

Group of orthologs #1370. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 C.japonica:60

Q74ZL2              	100.00%		H2WNN1              	100.00%
Bootstrap support for Q74ZL2 as seed ortholog is 100%.
Bootstrap support for H2WNN1 as seed ortholog is 100%.

Group of orthologs #1371. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:59

Q755B9              	100.00%		H2VLZ0              	100.00%
                    	       		H2WES3              	15.58%
                    	       		H2W2E6              	14.52%
                    	       		H2WA77              	13.92%
Bootstrap support for Q755B9 as seed ortholog is 100%.
Bootstrap support for H2VLZ0 as seed ortholog is 100%.

Group of orthologs #1372. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:59

Q750U4              	100.00%		H2W0L2              	100.00%
Bootstrap support for Q750U4 as seed ortholog is 100%.
Bootstrap support for H2W0L2 as seed ortholog is 100%.

Group of orthologs #1373. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:59

Q757S6              	100.00%		H2VYW2              	100.00%
Bootstrap support for Q757S6 as seed ortholog is 100%.
Bootstrap support for H2VYW2 as seed ortholog is 100%.

Group of orthologs #1374. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:59

Q756L1              	100.00%		H2W5Y8              	100.00%
Bootstrap support for Q756L1 as seed ortholog is 100%.
Bootstrap support for H2W5Y8 as seed ortholog is 100%.

Group of orthologs #1375. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:59

Q75F72              	100.00%		H2VXX2              	100.00%
Bootstrap support for Q75F72 as seed ortholog is 100%.
Bootstrap support for H2VXX2 as seed ortholog is 100%.

Group of orthologs #1376. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:59

Q74Z39              	100.00%		H2WMH4              	100.00%
Bootstrap support for Q74Z39 as seed ortholog is 100%.
Bootstrap support for H2WMH4 as seed ortholog is 100%.

Group of orthologs #1377. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 C.japonica:2

Q75AV7              	100.00%		K7HD93              	100.00%
Bootstrap support for Q75AV7 as seed ortholog is 100%.
Bootstrap support for K7HD93 as seed ortholog is 47%.
Alternative seed ortholog is H2VJ45 (2 bits away from this cluster)

Group of orthologs #1378. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q75CN3              	100.00%		H2W0T2              	100.00%
Q75D64              	100.00%		H2WLY9              	100.00%
Q755R4              	100.00%		H2W3W9              	100.00%
Q755R6              	100.00%		K7I4S8              	100.00%
Q755R5              	51.12%		H2WB14              	88.75%
                    	       		K7HU99              	74.23%
                    	       		H2VXB7              	55.72%
                    	       		H2VSH4              	37.93%
                    	       		H2VZ32              	33.22%
                    	       		K7IIC0              	32.69%
                    	       		H2WJ37              	28.62%
                    	       		H2WJ32              	20.67%
                    	       		K7HZ64              	19.26%
                    	       		H2VMY7              	18.90%
                    	       		H2WBQ4              	17.90%
                    	       		H2WNP5              	16.70%
                    	       		H2VIC9              	16.67%
                    	       		H2WG30              	14.34%
                    	       		H2VZ40              	13.54%
                    	       		H2VJS3              	10.19%
                    	       		H2WEB7              	6.31%
                    	       		H2WBC7              	6.15%
Bootstrap support for Q75CN3 as seed ortholog is 100%.
Bootstrap support for Q75D64 as seed ortholog is 100%.
Bootstrap support for Q755R4 as seed ortholog is 100%.
Bootstrap support for Q755R6 as seed ortholog is 100%.
Bootstrap support for H2W0T2 as seed ortholog is 100%.
Bootstrap support for H2WLY9 as seed ortholog is 100%.
Bootstrap support for H2W3W9 as seed ortholog is 100%.
Bootstrap support for K7I4S8 as seed ortholog is 100%.

Group of orthologs #1379. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q754B3              	100.00%		H2VJ63              	100.00%
                    	       		K7HAG7              	64.23%
Bootstrap support for Q754B3 as seed ortholog is 100%.
Bootstrap support for H2VJ63 as seed ortholog is 100%.

Group of orthologs #1380. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q74Z40              	100.00%		H2WGJ4              	100.00%
Bootstrap support for Q74Z40 as seed ortholog is 100%.
Bootstrap support for H2WGJ4 as seed ortholog is 100%.

Group of orthologs #1381. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q74ZP1              	100.00%		H2WJK7              	100.00%
Bootstrap support for Q74ZP1 as seed ortholog is 100%.
Bootstrap support for H2WJK7 as seed ortholog is 100%.

Group of orthologs #1382. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q75AZ2              	100.00%		H2W8T2              	100.00%
Bootstrap support for Q75AZ2 as seed ortholog is 100%.
Bootstrap support for H2W8T2 as seed ortholog is 100%.

Group of orthologs #1383. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q75DX8              	100.00%		H2WIW2              	100.00%
Bootstrap support for Q75DX8 as seed ortholog is 100%.
Bootstrap support for H2WIW2 as seed ortholog is 100%.

Group of orthologs #1384. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q750K4              	100.00%		K7HD96              	100.00%
Bootstrap support for Q750K4 as seed ortholog is 100%.
Bootstrap support for K7HD96 as seed ortholog is 100%.

Group of orthologs #1385. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:58

Q75E14              	100.00%		K7HDR9              	100.00%
Bootstrap support for Q75E14 as seed ortholog is 100%.
Bootstrap support for K7HDR9 as seed ortholog is 100%.

Group of orthologs #1386. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 C.japonica:11

Q75AR2              	100.00%		K7I0C3              	100.00%
Bootstrap support for Q75AR2 as seed ortholog is 100%.
Bootstrap support for K7I0C3 as seed ortholog is 64%.
Alternative seed ortholog is K7I322 (11 bits away from this cluster)

Group of orthologs #1387. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q75AV5              	100.00%		H2VMX1              	100.00%
                    	       		H2VN20              	31.04%
Bootstrap support for Q75AV5 as seed ortholog is 100%.
Bootstrap support for H2VMX1 as seed ortholog is 100%.

Group of orthologs #1388. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q756H3              	100.00%		H2WDF7              	100.00%
                    	       		H2WLL4              	26.65%
Bootstrap support for Q756H3 as seed ortholog is 100%.
Bootstrap support for H2WDF7 as seed ortholog is 100%.

Group of orthologs #1389. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q753C9              	100.00%		H2VMB1              	100.00%
Bootstrap support for Q753C9 as seed ortholog is 100%.
Bootstrap support for H2VMB1 as seed ortholog is 100%.

Group of orthologs #1390. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q75CG1              	100.00%		H2VXR1              	100.00%
Bootstrap support for Q75CG1 as seed ortholog is 100%.
Bootstrap support for H2VXR1 as seed ortholog is 100%.

Group of orthologs #1391. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q751U4              	100.00%		H2WKV3              	100.00%
Bootstrap support for Q751U4 as seed ortholog is 100%.
Bootstrap support for H2WKV3 as seed ortholog is 100%.

Group of orthologs #1392. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q751G0              	100.00%		H2X9L6              	100.00%
Bootstrap support for Q751G0 as seed ortholog is 100%.
Bootstrap support for H2X9L6 as seed ortholog is 100%.

Group of orthologs #1393. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q753C7              	100.00%		K7H2H2              	100.00%
Bootstrap support for Q753C7 as seed ortholog is 100%.
Bootstrap support for K7H2H2 as seed ortholog is 100%.

Group of orthologs #1394. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 C.japonica:57

Q75AD0              	100.00%		K7H3Z9              	100.00%
Bootstrap support for Q75AD0 as seed ortholog is 100%.
Bootstrap support for K7H3Z9 as seed ortholog is 100%.

Group of orthologs #1395. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

Q751R3              	100.00%		H2VI15              	100.00%
                    	       		K7HSI9              	40.54%
Bootstrap support for Q751R3 as seed ortholog is 100%.
Bootstrap support for H2VI15 as seed ortholog is 100%.

Group of orthologs #1396. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

D8FGB7              	100.00%		H2W368              	100.00%
                    	       		K7HTR5              	100.00%
Bootstrap support for D8FGB7 as seed ortholog is 100%.
Bootstrap support for H2W368 as seed ortholog is 100%.
Bootstrap support for K7HTR5 as seed ortholog is 100%.

Group of orthologs #1397. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

Q752L7              	100.00%		K7I8F6              	100.00%
                    	       		K7GXP5              	30.17%
Bootstrap support for Q752L7 as seed ortholog is 100%.
Bootstrap support for K7I8F6 as seed ortholog is 100%.

Group of orthologs #1398. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

Q75A20              	100.00%		H2VLP0              	100.00%
Bootstrap support for Q75A20 as seed ortholog is 100%.
Bootstrap support for H2VLP0 as seed ortholog is 100%.

Group of orthologs #1399. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

Q754W2              	100.00%		H2VZM1              	100.00%
Bootstrap support for Q754W2 as seed ortholog is 100%.
Bootstrap support for H2VZM1 as seed ortholog is 100%.

Group of orthologs #1400. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

Q750A3              	100.00%		H2WCS1              	100.00%
Bootstrap support for Q750A3 as seed ortholog is 100%.
Bootstrap support for H2WCS1 as seed ortholog is 100%.

Group of orthologs #1401. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 C.japonica:56

Q75AI5              	100.00%		H2WP12              	100.00%
Bootstrap support for Q75AI5 as seed ortholog is 100%.
Bootstrap support for H2WP12 as seed ortholog is 100%.

Group of orthologs #1402. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 C.japonica:55

Q757P5              	100.00%		H2VLG0              	100.00%
Bootstrap support for Q757P5 as seed ortholog is 100%.
Bootstrap support for H2VLG0 as seed ortholog is 100%.

Group of orthologs #1403. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 C.japonica:55

Q75D32              	100.00%		H2WR72              	100.00%
Bootstrap support for Q75D32 as seed ortholog is 100%.
Bootstrap support for H2WR72 as seed ortholog is 100%.

Group of orthologs #1404. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:54

Q752E2              	100.00%		H2VPF7              	100.00%
Bootstrap support for Q752E2 as seed ortholog is 100%.
Bootstrap support for H2VPF7 as seed ortholog is 100%.

Group of orthologs #1405. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:54

Q74ZK1              	100.00%		H2WCF7              	100.00%
Bootstrap support for Q74ZK1 as seed ortholog is 100%.
Bootstrap support for H2WCF7 as seed ortholog is 100%.

Group of orthologs #1406. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:54

Q75D21              	100.00%		H2W5S9              	100.00%
Bootstrap support for Q75D21 as seed ortholog is 100%.
Bootstrap support for H2W5S9 as seed ortholog is 100%.

Group of orthologs #1407. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:54

Q75AA1              	100.00%		H2WKS1              	100.00%
Bootstrap support for Q75AA1 as seed ortholog is 100%.
Bootstrap support for H2WKS1 as seed ortholog is 100%.

Group of orthologs #1408. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:54

Q75BB8              	100.00%		K7H260              	100.00%
Bootstrap support for Q75BB8 as seed ortholog is 100%.
Bootstrap support for K7H260 as seed ortholog is 100%.

Group of orthologs #1409. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 C.japonica:54

Q759Q9              	100.00%		K7IEB9              	100.00%
Bootstrap support for Q759Q9 as seed ortholog is 100%.
Bootstrap support for K7IEB9 as seed ortholog is 100%.

Group of orthologs #1410. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.japonica:53

Q75AG5              	100.00%		H2VLC4              	100.00%
Bootstrap support for Q75AG5 as seed ortholog is 100%.
Bootstrap support for H2VLC4 as seed ortholog is 100%.

Group of orthologs #1411. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.japonica:53

Q757U1              	100.00%		K7GY09              	100.00%
Bootstrap support for Q757U1 as seed ortholog is 100%.
Bootstrap support for K7GY09 as seed ortholog is 100%.

Group of orthologs #1412. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 C.japonica:53

Q74ZD3              	100.00%		K7HYV2              	100.00%
Bootstrap support for Q74ZD3 as seed ortholog is 100%.
Bootstrap support for K7HYV2 as seed ortholog is 100%.

Group of orthologs #1413. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q75AD1              	100.00%		H2VGU4              	100.00%
                    	       		K7I1H3              	100.00%
Bootstrap support for Q75AD1 as seed ortholog is 100%.
Bootstrap support for H2VGU4 as seed ortholog is 100%.
Bootstrap support for K7I1H3 as seed ortholog is 100%.

Group of orthologs #1414. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q753K7              	100.00%		H2WQ22              	100.00%
                    	       		K7HXC2              	44.87%
Bootstrap support for Q753K7 as seed ortholog is 100%.
Bootstrap support for H2WQ22 as seed ortholog is 100%.

Group of orthologs #1415. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q75AC1              	100.00%		K7HUA1              	100.00%
                    	       		K7I163              	55.45%
Bootstrap support for Q75AC1 as seed ortholog is 100%.
Bootstrap support for K7HUA1 as seed ortholog is 100%.

Group of orthologs #1416. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q753P4              	100.00%		H2VXC2              	100.00%
Bootstrap support for Q753P4 as seed ortholog is 100%.
Bootstrap support for H2VXC2 as seed ortholog is 100%.

Group of orthologs #1417. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q74ZX1              	100.00%		H2W7S0              	100.00%
Bootstrap support for Q74ZX1 as seed ortholog is 100%.
Bootstrap support for H2W7S0 as seed ortholog is 100%.

Group of orthologs #1418. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q75AK0              	100.00%		H2W2F5              	100.00%
Bootstrap support for Q75AK0 as seed ortholog is 100%.
Bootstrap support for H2W2F5 as seed ortholog is 100%.

Group of orthologs #1419. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:6

Q75C81              	100.00%		H2WEM2              	100.00%
Bootstrap support for Q75C81 as seed ortholog is 100%.
Bootstrap support for H2WEM2 as seed ortholog is 64%.
Alternative seed ortholog is K7GW54 (6 bits away from this cluster)

Group of orthologs #1420. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 C.japonica:52

Q74ZN4              	100.00%		K7H3S0              	100.00%
Bootstrap support for Q74ZN4 as seed ortholog is 100%.
Bootstrap support for K7H3S0 as seed ortholog is 100%.

Group of orthologs #1421. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q759G8              	100.00%		H2VRQ7              	100.00%
Q757T9              	7.59%		H2W095              	22.66%
Bootstrap support for Q759G8 as seed ortholog is 100%.
Bootstrap support for H2VRQ7 as seed ortholog is 100%.

Group of orthologs #1422. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q759N8              	100.00%		H2WEI5              	100.00%
Q755C3              	9.52%		
Bootstrap support for Q759N8 as seed ortholog is 100%.
Bootstrap support for H2WEI5 as seed ortholog is 100%.

Group of orthologs #1423. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q75AY2              	100.00%		H2WGY8              	100.00%
                    	       		K7IGY6              	50.61%
Bootstrap support for Q75AY2 as seed ortholog is 100%.
Bootstrap support for H2WGY8 as seed ortholog is 100%.

Group of orthologs #1424. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q758M1              	100.00%		H2WK11              	100.00%
Bootstrap support for Q758M1 as seed ortholog is 100%.
Bootstrap support for H2WK11 as seed ortholog is 100%.

Group of orthologs #1425. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q75DC6              	100.00%		H2WE51              	100.00%
Bootstrap support for Q75DC6 as seed ortholog is 100%.
Bootstrap support for H2WE51 as seed ortholog is 100%.

Group of orthologs #1426. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q750L1              	100.00%		H2XHP6              	100.00%
Bootstrap support for Q750L1 as seed ortholog is 100%.
Bootstrap support for H2XHP6 as seed ortholog is 100%.

Group of orthologs #1427. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q75EM5              	100.00%		H2WL05              	100.00%
Bootstrap support for Q75EM5 as seed ortholog is 100%.
Bootstrap support for H2WL05 as seed ortholog is 100%.

Group of orthologs #1428. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 C.japonica:51

Q75AI6              	100.00%		H2X3Z6              	100.00%
Bootstrap support for Q75AI6 as seed ortholog is 100%.
Bootstrap support for H2X3Z6 as seed ortholog is 100%.

Group of orthologs #1429. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.japonica:50

Q75F63              	100.00%		H2VJG8              	100.00%
                    	       		K7IAP6              	77.19%
Bootstrap support for Q75F63 as seed ortholog is 100%.
Bootstrap support for H2VJG8 as seed ortholog is 100%.

Group of orthologs #1430. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 C.japonica:50

Q757S0              	100.00%		H2VV96              	100.00%
Bootstrap support for Q757S0 as seed ortholog is 100%.
Bootstrap support for H2VV96 as seed ortholog is 100%.

Group of orthologs #1431. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:49

Q75DB3              	100.00%		H2VSK6              	100.00%
Q759E7              	5.34%		H2W8A5              	16.80%
                    	       		H2WPC1              	13.73%
                    	       		H2VN67              	7.23%
                    	       		H2W9B1              	6.50%
                    	       		H2WI01              	6.50%
Bootstrap support for Q75DB3 as seed ortholog is 100%.
Bootstrap support for H2VSK6 as seed ortholog is 100%.

Group of orthologs #1432. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:4

Q752M0              	100.00%		H2W0B4              	100.00%
                    	       		H2W6C7              	10.38%
Bootstrap support for Q752M0 as seed ortholog is 100%.
Bootstrap support for H2W0B4 as seed ortholog is 54%.
Alternative seed ortholog is H2VQR4 (4 bits away from this cluster)

Group of orthologs #1433. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:49

Q758A0              	100.00%		H2VNL6              	100.00%
Bootstrap support for Q758A0 as seed ortholog is 100%.
Bootstrap support for H2VNL6 as seed ortholog is 100%.

Group of orthologs #1434. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:49

Q75CX4              	100.00%		H2VI82              	100.00%
Bootstrap support for Q75CX4 as seed ortholog is 100%.
Bootstrap support for H2VI82 as seed ortholog is 100%.

Group of orthologs #1435. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:49

D8FGE1              	100.00%		H2W2J1              	100.00%
Bootstrap support for D8FGE1 as seed ortholog is 100%.
Bootstrap support for H2W2J1 as seed ortholog is 100%.

Group of orthologs #1436. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:49

Q753R0              	100.00%		H2W0J5              	100.00%
Bootstrap support for Q753R0 as seed ortholog is 100%.
Bootstrap support for H2W0J5 as seed ortholog is 100%.

Group of orthologs #1437. Best score 49 bits
Score difference with first non-orthologous sequence - A.gossypii:49 C.japonica:49

Q75DZ3              	100.00%		H2W795              	100.00%
Bootstrap support for Q75DZ3 as seed ortholog is 100%.
Bootstrap support for H2W795 as seed ortholog is 100%.

Group of orthologs #1438. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.japonica:48

Q752F4              	100.00%		H2VY42              	100.00%
                    	       		K7GTM2              	32.67%
                    	       		H2WKP0              	28.85%
                    	       		H2VX68              	24.90%
Bootstrap support for Q752F4 as seed ortholog is 100%.
Bootstrap support for H2VY42 as seed ortholog is 100%.

Group of orthologs #1439. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 C.japonica:48

Q752P6              	100.00%		H2WNP3              	100.00%
Bootstrap support for Q752P6 as seed ortholog is 100%.
Bootstrap support for H2WNP3 as seed ortholog is 100%.

Group of orthologs #1440. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.japonica:47

Q755F1              	100.00%		H2WH07              	100.00%
                    	       		H2WH14              	40.78%
                    	       		H2W2C3              	20.92%
                    	       		H2W4J8              	19.98%
                    	       		H2VSH5              	15.63%
                    	       		H2W9U4              	5.52%
Bootstrap support for Q755F1 as seed ortholog is 100%.
Bootstrap support for H2WH07 as seed ortholog is 100%.

Group of orthologs #1441. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.japonica:47

Q753R2              	100.00%		H2VT03              	100.00%
Bootstrap support for Q753R2 as seed ortholog is 100%.
Bootstrap support for H2VT03 as seed ortholog is 100%.

Group of orthologs #1442. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.japonica:47

Q75DS2              	100.00%		H2WJX9              	100.00%
Bootstrap support for Q75DS2 as seed ortholog is 100%.
Bootstrap support for H2WJX9 as seed ortholog is 100%.

Group of orthologs #1443. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 C.japonica:47

Q74Z56              	100.00%		K7I3T9              	100.00%
Bootstrap support for Q74Z56 as seed ortholog is 100%.
Bootstrap support for K7I3T9 as seed ortholog is 100%.

Group of orthologs #1444. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.japonica:46

Q750F0              	100.00%		H2WZU0              	100.00%
                    	       		H2W017              	50.90%
                    	       		H2W1A2              	14.86%
Bootstrap support for Q750F0 as seed ortholog is 100%.
Bootstrap support for H2WZU0 as seed ortholog is 100%.

Group of orthologs #1445. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.japonica:46

Q751T2              	100.00%		H2VHS5              	100.00%
Bootstrap support for Q751T2 as seed ortholog is 100%.
Bootstrap support for H2VHS5 as seed ortholog is 100%.

Group of orthologs #1446. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 C.japonica:46

Q75EE5              	100.00%		H2WB39              	100.00%
Bootstrap support for Q75EE5 as seed ortholog is 100%.
Bootstrap support for H2WB39 as seed ortholog is 100%.

Group of orthologs #1447. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.japonica:45

Q74Z66              	100.00%		H2VHJ2              	100.00%
Bootstrap support for Q74Z66 as seed ortholog is 100%.
Bootstrap support for H2VHJ2 as seed ortholog is 100%.

Group of orthologs #1448. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.japonica:45

Q750C2              	100.00%		H2VJ68              	100.00%
Bootstrap support for Q750C2 as seed ortholog is 100%.
Bootstrap support for H2VJ68 as seed ortholog is 100%.

Group of orthologs #1449. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 C.japonica:45

Q75BW1              	100.00%		H2W9I4              	100.00%
Bootstrap support for Q75BW1 as seed ortholog is 100%.
Bootstrap support for H2W9I4 as seed ortholog is 100%.

Group of orthologs #1450. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.japonica:44

Q75CD8              	100.00%		K7H097              	100.00%
                    	       		H2W3R2              	45.78%
                    	       		H2VSW0              	7.53%
Bootstrap support for Q75CD8 as seed ortholog is 100%.
Bootstrap support for K7H097 as seed ortholog is 100%.

Group of orthologs #1451. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.japonica:44

Q75AP9              	100.00%		K7HYB6              	100.00%
                    	       		H2WNT3              	95.85%
Bootstrap support for Q75AP9 as seed ortholog is 100%.
Bootstrap support for K7HYB6 as seed ortholog is 100%.

Group of orthologs #1452. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.japonica:44

Q751E4              	100.00%		H2X2W8              	100.00%
Bootstrap support for Q751E4 as seed ortholog is 100%.
Bootstrap support for H2X2W8 as seed ortholog is 100%.

Group of orthologs #1453. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 C.japonica:44

Q750I2              	100.00%		K7H4R3              	100.00%
Bootstrap support for Q750I2 as seed ortholog is 100%.
Bootstrap support for K7H4R3 as seed ortholog is 100%.

Group of orthologs #1454. Best score 43 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.japonica:2

Q757V0              	100.00%		H2VIQ3              	100.00%
                    	       		H2VY22              	8.45%
Bootstrap support for Q757V0 as seed ortholog is 100%.
Bootstrap support for H2VIQ3 as seed ortholog is 50%.
Alternative seed ortholog is H2WGH8 (2 bits away from this cluster)

Group of orthologs #1455. Best score 43 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.japonica:43

Q754M8              	100.00%		H2W4E3              	100.00%
                    	       		K7HHG4              	58.71%
Bootstrap support for Q754M8 as seed ortholog is 100%.
Bootstrap support for H2W4E3 as seed ortholog is 100%.

Group of orthologs #1456. Best score 43 bits
Score difference with first non-orthologous sequence - A.gossypii:43 C.japonica:43

Q754H9              	100.00%		H2WAY7              	100.00%
Q758F7              	15.96%		
Bootstrap support for Q754H9 as seed ortholog is 100%.
Bootstrap support for H2WAY7 as seed ortholog is 100%.

Group of orthologs #1457. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.japonica:42

D8FGE9              	100.00%		H2WKC5              	100.00%
Q752D3              	69.38%		H2VXQ6              	12.37%
                    	       		H2WJ61              	11.83%
                    	       		K7HXN9              	11.83%
                    	       		K7GUC3              	9.68%
                    	       		H2WDY5              	6.45%
                    	       		K7HIE4              	5.91%
Bootstrap support for D8FGE9 as seed ortholog is 100%.
Bootstrap support for H2WKC5 as seed ortholog is 100%.

Group of orthologs #1458. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.japonica:42

Q75CM8              	100.00%		H2VSM9              	100.00%
                    	       		K7I8W2              	97.55%
Bootstrap support for Q75CM8 as seed ortholog is 100%.
Bootstrap support for H2VSM9 as seed ortholog is 100%.

Group of orthologs #1459. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.japonica:42

Q751X1              	100.00%		H2VJ15              	100.00%
Bootstrap support for Q751X1 as seed ortholog is 100%.
Bootstrap support for H2VJ15 as seed ortholog is 100%.

Group of orthologs #1460. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.japonica:42

Q74ZZ9              	100.00%		H2VM47              	100.00%
Bootstrap support for Q74ZZ9 as seed ortholog is 100%.
Bootstrap support for H2VM47 as seed ortholog is 100%.

Group of orthologs #1461. Best score 42 bits
Score difference with first non-orthologous sequence - A.gossypii:42 C.japonica:42

Q753X9              	100.00%		H2VTV3              	100.00%
Bootstrap support for Q753X9 as seed ortholog is 100%.
Bootstrap support for H2VTV3 as seed ortholog is 100%.

Group of orthologs #1462. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.japonica:41

Q75BN7              	100.00%		H2VM00              	100.00%
                    	       		K7HRY4              	70.97%
Bootstrap support for Q75BN7 as seed ortholog is 100%.
Bootstrap support for H2VM00 as seed ortholog is 100%.

Group of orthologs #1463. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.japonica:41

Q75F30              	100.00%		H2W0H5              	100.00%
                    	       		K7HXY1              	38.30%
Bootstrap support for Q75F30 as seed ortholog is 100%.
Bootstrap support for H2W0H5 as seed ortholog is 100%.

Group of orthologs #1464. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.japonica:41

Q750G6              	100.00%		H2VT50              	100.00%
Bootstrap support for Q750G6 as seed ortholog is 100%.
Bootstrap support for H2VT50 as seed ortholog is 100%.

Group of orthologs #1465. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.japonica:41

Q757R5              	100.00%		H2WPL5              	100.00%
Bootstrap support for Q757R5 as seed ortholog is 100%.
Bootstrap support for H2WPL5 as seed ortholog is 100%.

Group of orthologs #1466. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 C.japonica:41

Q75EA8              	100.00%		K7GVQ7              	100.00%
Bootstrap support for Q75EA8 as seed ortholog is 100%.
Bootstrap support for K7GVQ7 as seed ortholog is 100%.

Group of orthologs #1467. Best score 40 bits
Score difference with first non-orthologous sequence - A.gossypii:40 C.japonica:40

Q74ZP2              	100.00%		K7IG64              	100.00%
Q758Y6              	6.42%		H2VQK4              	97.31%
Bootstrap support for Q74ZP2 as seed ortholog is 100%.
Bootstrap support for K7IG64 as seed ortholog is 100%.