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33 groups of orthologs
40 in-paralogs from A.delicata
35 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
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Group of orthologs #1. Best score 471 bits
Score difference with first non-orthologous sequence - A.delicata:471 C.trachomatis:471

J0WWP9              	100.00%		O84754              	100.00%
Bootstrap support for J0WWP9 as seed ortholog is 100%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #2. Best score 446 bits
Score difference with first non-orthologous sequence - A.delicata:446 C.trachomatis:446

J0DAI3              	100.00%		O84834              	100.00%
Bootstrap support for J0DAI3 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #3. Best score 373 bits
Score difference with first non-orthologous sequence - A.delicata:373 C.trachomatis:373

J0LKN7              	100.00%		P0CE13              	100.00%
Bootstrap support for J0LKN7 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #4. Best score 287 bits
Score difference with first non-orthologous sequence - A.delicata:287 C.trachomatis:287

J0WKQ1              	100.00%		P17821              	100.00%
J0WMD6              	30.02%		
Bootstrap support for J0WKQ1 as seed ortholog is 100%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #5. Best score 226 bits
Score difference with first non-orthologous sequence - A.delicata:226 C.trachomatis:88

J0LEV2              	100.00%		O84026              	100.00%
Bootstrap support for J0LEV2 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 99%.

Group of orthologs #6. Best score 218 bits
Score difference with first non-orthologous sequence - A.delicata:218 C.trachomatis:218

J0WTW9              	100.00%		O84787              	100.00%
Bootstrap support for J0WTW9 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #7. Best score 205 bits
Score difference with first non-orthologous sequence - A.delicata:83 C.trachomatis:205

J0CVZ1              	100.00%		O84732              	100.00%
Bootstrap support for J0CVZ1 as seed ortholog is 94%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #8. Best score 205 bits
Score difference with first non-orthologous sequence - A.delicata:205 C.trachomatis:205

J0D7B3              	100.00%		O84734              	100.00%
Bootstrap support for J0D7B3 as seed ortholog is 100%.
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #9. Best score 195 bits
Score difference with first non-orthologous sequence - A.delicata:195 C.trachomatis:195

J0D2C5              	100.00%		O84444              	100.00%
J0WS50              	13.02%		
Bootstrap support for J0D2C5 as seed ortholog is 100%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #10. Best score 187 bits
Score difference with first non-orthologous sequence - A.delicata:187 C.trachomatis:187

J0WSE3              	100.00%		O84630              	100.00%
Bootstrap support for J0WSE3 as seed ortholog is 100%.
Bootstrap support for O84630 as seed ortholog is 100%.

Group of orthologs #11. Best score 126 bits
Score difference with first non-orthologous sequence - A.delicata:11 C.trachomatis:126

J0DAR8              	100.00%		P38004              	100.00%
Bootstrap support for J0DAR8 as seed ortholog is 64%.
Alternative seed ortholog is J0LFI0 (11 bits away from this cluster)
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #12. Best score 126 bits
Score difference with first non-orthologous sequence - A.delicata:126 C.trachomatis:126

J0WT25              	100.00%		O84006              	100.00%
Bootstrap support for J0WT25 as seed ortholog is 100%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #13. Best score 123 bits
Score difference with first non-orthologous sequence - A.delicata:123 C.trachomatis:123

J0CZ38              	100.00%		O84456              	100.00%
Bootstrap support for J0CZ38 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #14. Best score 111 bits
Score difference with first non-orthologous sequence - A.delicata:111 C.trachomatis:111

J0DD48              	100.00%		O84215              	100.00%
Bootstrap support for J0DD48 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #15. Best score 108 bits
Score difference with first non-orthologous sequence - A.delicata:108 C.trachomatis:108

J0DCY0              	100.00%		O84442              	100.00%
Bootstrap support for J0DCY0 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #16. Best score 105 bits
Score difference with first non-orthologous sequence - A.delicata:105 C.trachomatis:105

J0WNF2              	100.00%		O84374              	100.00%
Bootstrap support for J0WNF2 as seed ortholog is 100%.
Bootstrap support for O84374 as seed ortholog is 100%.

Group of orthologs #17. Best score 101 bits
Score difference with first non-orthologous sequence - A.delicata:101 C.trachomatis:50

J0D0D3              	100.00%		O84266              	100.00%
Bootstrap support for J0D0D3 as seed ortholog is 100%.
Bootstrap support for O84266 as seed ortholog is 93%.

Group of orthologs #18. Best score 91 bits
Score difference with first non-orthologous sequence - A.delicata:91 C.trachomatis:91

J0WVQ4              	100.00%		O84478              	100.00%
Bootstrap support for J0WVQ4 as seed ortholog is 100%.
Bootstrap support for O84478 as seed ortholog is 100%.

Group of orthologs #19. Best score 88 bits
Score difference with first non-orthologous sequence - A.delicata:88 C.trachomatis:88

J0CX71              	100.00%		O84027              	100.00%
Bootstrap support for J0CX71 as seed ortholog is 100%.
Bootstrap support for O84027 as seed ortholog is 100%.

Group of orthologs #20. Best score 84 bits
Score difference with first non-orthologous sequence - A.delicata:84 C.trachomatis:84

J0WRF2              	100.00%		O84546              	100.00%
Bootstrap support for J0WRF2 as seed ortholog is 100%.
Bootstrap support for O84546 as seed ortholog is 100%.

Group of orthologs #21. Best score 77 bits
Score difference with first non-orthologous sequence - A.delicata:77 C.trachomatis:77

J0WP91              	100.00%		O84835              	100.00%
J0D3G0              	23.84%		
J0CR43              	23.13%		
J0L9Z7              	19.22%		
J0WQS6              	19.04%		
Bootstrap support for J0WP91 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #22. Best score 76 bits
Score difference with first non-orthologous sequence - A.delicata:76 C.trachomatis:76

J0LKH5              	100.00%		P0CD71              	100.00%
Bootstrap support for J0LKH5 as seed ortholog is 100%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #23. Best score 68 bits
Score difference with first non-orthologous sequence - A.delicata:68 C.trachomatis:68

J0LDL0              	100.00%		P0CD81              	100.00%
Bootstrap support for J0LDL0 as seed ortholog is 100%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #24. Best score 67 bits
Score difference with first non-orthologous sequence - A.delicata:67 C.trachomatis:67

J0LFB2              	100.00%		P0C0Z7              	100.00%
                    	       		O84609              	14.74%
                    	       		O84760              	6.60%
Bootstrap support for J0LFB2 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #25. Best score 67 bits
Score difference with first non-orthologous sequence - A.delicata:67 C.trachomatis:67

J0D757              	100.00%		O84301              	100.00%
Bootstrap support for J0D757 as seed ortholog is 100%.
Bootstrap support for O84301 as seed ortholog is 100%.

Group of orthologs #26. Best score 64 bits
Score difference with first non-orthologous sequence - A.delicata:20 C.trachomatis:64

J0LDT5              	100.00%		O84469              	100.00%
Bootstrap support for J0LDT5 as seed ortholog is 68%.
Alternative seed ortholog is J0CVY8 (20 bits away from this cluster)
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #27. Best score 60 bits
Score difference with first non-orthologous sequence - A.delicata:60 C.trachomatis:60

J0WU13              	100.00%		O84544              	100.00%
Bootstrap support for J0WU13 as seed ortholog is 100%.
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #28. Best score 57 bits
Score difference with first non-orthologous sequence - A.delicata:57 C.trachomatis:57

J0WTI0              	100.00%		O84693              	100.00%
J0LGI4              	41.32%		
Bootstrap support for J0WTI0 as seed ortholog is 100%.
Bootstrap support for O84693 as seed ortholog is 100%.

Group of orthologs #29. Best score 57 bits
Score difference with first non-orthologous sequence - A.delicata:1 C.trachomatis:57

J0DBI2              	100.00%		P0CE04              	100.00%
Bootstrap support for J0DBI2 as seed ortholog is 47%.
Alternative seed ortholog is J0WTN7 (1 bits away from this cluster)
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #30. Best score 57 bits
Score difference with first non-orthologous sequence - A.delicata:57 C.trachomatis:57

J0WVJ6              	100.00%		O84727              	100.00%
Bootstrap support for J0WVJ6 as seed ortholog is 100%.
Bootstrap support for O84727 as seed ortholog is 100%.

Group of orthologs #31. Best score 55 bits
Score difference with first non-orthologous sequence - A.delicata:55 C.trachomatis:55

J0DCI2              	100.00%		O84527              	100.00%
Bootstrap support for J0DCI2 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #32. Best score 54 bits
Score difference with first non-orthologous sequence - A.delicata:54 C.trachomatis:54

J0CXY0              	100.00%		O84381              	100.00%
Bootstrap support for J0CXY0 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #33. Best score 52 bits
Score difference with first non-orthologous sequence - A.delicata:52 C.trachomatis:52

J0LFP8              	100.00%		P0CE07              	100.00%
Bootstrap support for J0LFP8 as seed ortholog is 100%.
Bootstrap support for P0CE07 as seed ortholog is 100%.