###################################
144 groups of orthologs
199 in-paralogs from A.darlingi
152 in-paralogs from C.trachomatis
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 888 bits
Score difference with first non-orthologous sequence - A.darlingi:653 C.trachomatis:888

E3XBA2              	100.00%		O84022              	100.00%
Bootstrap support for E3XBA2 as seed ortholog is 100%.
Bootstrap support for O84022 as seed ortholog is 100%.

Group of orthologs #2. Best score 834 bits
Score difference with first non-orthologous sequence - A.darlingi:834 C.trachomatis:834

E3X3Y6              	100.00%		O84250              	100.00%
Bootstrap support for E3X3Y6 as seed ortholog is 100%.
Bootstrap support for O84250 as seed ortholog is 100%.

Group of orthologs #3. Best score 696 bits
Score difference with first non-orthologous sequence - A.darlingi:139 C.trachomatis:696

E3WTZ7              	100.00%		P17821              	100.00%
Bootstrap support for E3WTZ7 as seed ortholog is 99%.
Bootstrap support for P17821 as seed ortholog is 100%.

Group of orthologs #4. Best score 661 bits
Score difference with first non-orthologous sequence - A.darlingi:661 C.trachomatis:661

E3WPM6              	100.00%		O84348              	100.00%
Bootstrap support for E3WPM6 as seed ortholog is 100%.
Bootstrap support for O84348 as seed ortholog is 100%.

Group of orthologs #5. Best score 595 bits
Score difference with first non-orthologous sequence - A.darlingi:595 C.trachomatis:595

E3X2Y6              	100.00%		O84716              	100.00%
Bootstrap support for E3X2Y6 as seed ortholog is 100%.
Bootstrap support for O84716 as seed ortholog is 100%.

Group of orthologs #6. Best score 542 bits
Score difference with first non-orthologous sequence - A.darlingi:346 C.trachomatis:396

E3X9S6              	100.00%		O84444              	100.00%
Bootstrap support for E3X9S6 as seed ortholog is 100%.
Bootstrap support for O84444 as seed ortholog is 100%.

Group of orthologs #7. Best score 531 bits
Score difference with first non-orthologous sequence - A.darlingi:468 C.trachomatis:362

E3XFN3              	100.00%		P0C0Z7              	100.00%
Bootstrap support for E3XFN3 as seed ortholog is 100%.
Bootstrap support for P0C0Z7 as seed ortholog is 100%.

Group of orthologs #8. Best score 519 bits
Score difference with first non-orthologous sequence - A.darlingi:347 C.trachomatis:519

E3WJN3              	100.00%		O84304              	100.00%
E3X5F6              	7.10%		
Bootstrap support for E3WJN3 as seed ortholog is 100%.
Bootstrap support for O84304 as seed ortholog is 100%.

Group of orthologs #9. Best score 512 bits
Score difference with first non-orthologous sequence - A.darlingi:512 C.trachomatis:512

E3WK16              	100.00%		O84057              	100.00%
Bootstrap support for E3WK16 as seed ortholog is 100%.
Bootstrap support for O84057 as seed ortholog is 100%.

Group of orthologs #10. Best score 488 bits
Score difference with first non-orthologous sequence - A.darlingi:488 C.trachomatis:488

E3WN89              	100.00%		O84585              	100.00%
Bootstrap support for E3WN89 as seed ortholog is 100%.
Bootstrap support for O84585 as seed ortholog is 100%.

Group of orthologs #11. Best score 475 bits
Score difference with first non-orthologous sequence - A.darlingi:475 C.trachomatis:475

E3WVS1              	100.00%		O84863              	100.00%
Bootstrap support for E3WVS1 as seed ortholog is 100%.
Bootstrap support for O84863 as seed ortholog is 100%.

Group of orthologs #12. Best score 470 bits
Score difference with first non-orthologous sequence - A.darlingi:190 C.trachomatis:470

E3WW65              	100.00%		O84754              	100.00%
Bootstrap support for E3WW65 as seed ortholog is 99%.
Bootstrap support for O84754 as seed ortholog is 100%.

Group of orthologs #13. Best score 465 bits
Score difference with first non-orthologous sequence - A.darlingi:465 C.trachomatis:465

E3WJ53              	100.00%		O84834              	100.00%
Bootstrap support for E3WJ53 as seed ortholog is 100%.
Bootstrap support for O84834 as seed ortholog is 100%.

Group of orthologs #14. Best score 424 bits
Score difference with first non-orthologous sequence - A.darlingi:424 C.trachomatis:424

E3X6C6              	100.00%		O84848              	100.00%
Bootstrap support for E3X6C6 as seed ortholog is 100%.
Bootstrap support for O84848 as seed ortholog is 100%.

Group of orthologs #15. Best score 413 bits
Score difference with first non-orthologous sequence - A.darlingi:413 C.trachomatis:413

E3X1B0              	100.00%		P0CD73              	100.00%
Bootstrap support for E3X1B0 as seed ortholog is 100%.
Bootstrap support for P0CD73 as seed ortholog is 100%.

Group of orthologs #16. Best score 396 bits
Score difference with first non-orthologous sequence - A.darlingi:396 C.trachomatis:396

E3WV78              	100.00%		O84849              	100.00%
Bootstrap support for E3WV78 as seed ortholog is 100%.
Bootstrap support for O84849 as seed ortholog is 100%.

Group of orthologs #17. Best score 394 bits
Score difference with first non-orthologous sequence - A.darlingi:68 C.trachomatis:394

E3XFR7              	100.00%		P0CD71              	100.00%
Bootstrap support for E3XFR7 as seed ortholog is 98%.
Bootstrap support for P0CD71 as seed ortholog is 100%.

Group of orthologs #18. Best score 387 bits
Score difference with first non-orthologous sequence - A.darlingi:387 C.trachomatis:387

E3X1E0              	100.00%		O84211              	100.00%
Bootstrap support for E3X1E0 as seed ortholog is 100%.
Bootstrap support for O84211 as seed ortholog is 100%.

Group of orthologs #19. Best score 387 bits
Score difference with first non-orthologous sequence - A.darlingi:387 C.trachomatis:387

E3WZK3              	100.00%		P0CE13              	100.00%
Bootstrap support for E3WZK3 as seed ortholog is 100%.
Bootstrap support for P0CE13 as seed ortholog is 100%.

Group of orthologs #20. Best score 380 bits
Score difference with first non-orthologous sequence - A.darlingi:380 C.trachomatis:380

E3XAD1              	100.00%		O84310              	100.00%
Bootstrap support for E3XAD1 as seed ortholog is 100%.
Bootstrap support for O84310 as seed ortholog is 100%.

Group of orthologs #21. Best score 345 bits
Score difference with first non-orthologous sequence - A.darlingi:345 C.trachomatis:345

E3XDY5              	100.00%		O84591              	100.00%
Bootstrap support for E3XDY5 as seed ortholog is 100%.
Bootstrap support for O84591 as seed ortholog is 100%.

Group of orthologs #22. Best score 339 bits
Score difference with first non-orthologous sequence - A.darlingi:339 C.trachomatis:339

E3X5F9              	100.00%		O84831              	100.00%
Bootstrap support for E3X5F9 as seed ortholog is 100%.
Bootstrap support for O84831 as seed ortholog is 100%.

Group of orthologs #23. Best score 331 bits
Score difference with first non-orthologous sequence - A.darlingi:291 C.trachomatis:331

E3X5R6              	100.00%		O84711              	100.00%
Bootstrap support for E3X5R6 as seed ortholog is 100%.
Bootstrap support for O84711 as seed ortholog is 100%.

Group of orthologs #24. Best score 318 bits
Score difference with first non-orthologous sequence - A.darlingi:318 C.trachomatis:318

E3X668              	100.00%		O84829              	100.00%
Bootstrap support for E3X668 as seed ortholog is 100%.
Bootstrap support for O84829 as seed ortholog is 100%.

Group of orthologs #25. Best score 307 bits
Score difference with first non-orthologous sequence - A.darlingi:307 C.trachomatis:307

E3XA56              	100.00%		O84775              	100.00%
Bootstrap support for E3XA56 as seed ortholog is 100%.
Bootstrap support for O84775 as seed ortholog is 100%.

Group of orthologs #26. Best score 288 bits
Score difference with first non-orthologous sequence - A.darlingi:288 C.trachomatis:288

E3WZK4              	100.00%		Q59321              	100.00%
Bootstrap support for E3WZK4 as seed ortholog is 100%.
Bootstrap support for Q59321 as seed ortholog is 100%.

Group of orthologs #27. Best score 278 bits
Score difference with first non-orthologous sequence - A.darlingi:278 C.trachomatis:278

E3WX13              	100.00%		P0CE21              	100.00%
Bootstrap support for E3WX13 as seed ortholog is 100%.
Bootstrap support for P0CE21 as seed ortholog is 100%.

Group of orthologs #28. Best score 272 bits
Score difference with first non-orthologous sequence - A.darlingi:272 C.trachomatis:272

E3XBN5              	100.00%		P0CD78              	100.00%
Bootstrap support for E3XBN5 as seed ortholog is 100%.
Bootstrap support for P0CD78 as seed ortholog is 100%.

Group of orthologs #29. Best score 269 bits
Score difference with first non-orthologous sequence - A.darlingi:269 C.trachomatis:269

E3X5H8              	100.00%		O84316              	100.00%
E3XD74              	8.37%		
Bootstrap support for E3X5H8 as seed ortholog is 100%.
Bootstrap support for O84316 as seed ortholog is 100%.

Group of orthologs #30. Best score 269 bits
Score difference with first non-orthologous sequence - A.darlingi:130 C.trachomatis:269

E3X3E3              	100.00%		O84249              	100.00%
Bootstrap support for E3X3E3 as seed ortholog is 99%.
Bootstrap support for O84249 as seed ortholog is 100%.

Group of orthologs #31. Best score 268 bits
Score difference with first non-orthologous sequence - A.darlingi:268 C.trachomatis:268

E3WSY6              	100.00%		P0CE09              	100.00%
E3X721              	11.72%		
Bootstrap support for E3WSY6 as seed ortholog is 100%.
Bootstrap support for P0CE09 as seed ortholog is 100%.

Group of orthologs #32. Best score 268 bits
Score difference with first non-orthologous sequence - A.darlingi:140 C.trachomatis:268

E3X573              	100.00%		O84006              	100.00%
Bootstrap support for E3X573 as seed ortholog is 99%.
Bootstrap support for O84006 as seed ortholog is 100%.

Group of orthologs #33. Best score 265 bits
Score difference with first non-orthologous sequence - A.darlingi:265 C.trachomatis:265

E3X0U7              	100.00%		O84315              	100.00%
Bootstrap support for E3X0U7 as seed ortholog is 100%.
Bootstrap support for O84315 as seed ortholog is 100%.

Group of orthologs #34. Best score 265 bits
Score difference with first non-orthologous sequence - A.darlingi:265 C.trachomatis:265

E3X7E4              	100.00%		O84828              	100.00%
Bootstrap support for E3X7E4 as seed ortholog is 100%.
Bootstrap support for O84828 as seed ortholog is 100%.

Group of orthologs #35. Best score 264 bits
Score difference with first non-orthologous sequence - A.darlingi:264 C.trachomatis:264

E3WZU1              	100.00%		O84451              	100.00%
Bootstrap support for E3WZU1 as seed ortholog is 100%.
Bootstrap support for O84451 as seed ortholog is 100%.

Group of orthologs #36. Best score 262 bits
Score difference with first non-orthologous sequence - A.darlingi:262 C.trachomatis:262

E3WTS1              	100.00%		O84381              	100.00%
Bootstrap support for E3WTS1 as seed ortholog is 100%.
Bootstrap support for O84381 as seed ortholog is 100%.

Group of orthologs #37. Best score 258 bits
Score difference with first non-orthologous sequence - A.darlingi:258 C.trachomatis:258

E3WP73              	100.00%		O84439              	100.00%
Bootstrap support for E3WP73 as seed ortholog is 100%.
Bootstrap support for O84439 as seed ortholog is 100%.

Group of orthologs #38. Best score 253 bits
Score difference with first non-orthologous sequence - A.darlingi:157 C.trachomatis:253

E3X0W8              	100.00%		O84352              	100.00%
E3WLG2              	13.36%		
E3X290              	10.98%		
Bootstrap support for E3X0W8 as seed ortholog is 99%.
Bootstrap support for O84352 as seed ortholog is 100%.

Group of orthologs #39. Best score 253 bits
Score difference with first non-orthologous sequence - A.darlingi:184 C.trachomatis:253

E3XA70              	100.00%		O84309              	100.00%
Bootstrap support for E3XA70 as seed ortholog is 99%.
Bootstrap support for O84309 as seed ortholog is 100%.

Group of orthologs #40. Best score 251 bits
Score difference with first non-orthologous sequence - A.darlingi:154 C.trachomatis:251

E3WLN9              	100.00%		O84797              	100.00%
Bootstrap support for E3WLN9 as seed ortholog is 99%.
Bootstrap support for O84797 as seed ortholog is 100%.

Group of orthologs #41. Best score 248 bits
Score difference with first non-orthologous sequence - A.darlingi:248 C.trachomatis:248

E3WW53              	100.00%		O84188              	100.00%
Bootstrap support for E3WW53 as seed ortholog is 100%.
Bootstrap support for O84188 as seed ortholog is 100%.

Group of orthologs #42. Best score 247 bits
Score difference with first non-orthologous sequence - A.darlingi:247 C.trachomatis:87

E3X4J0              	100.00%		O84026              	100.00%
Bootstrap support for E3X4J0 as seed ortholog is 100%.
Bootstrap support for O84026 as seed ortholog is 99%.

Group of orthologs #43. Best score 243 bits
Score difference with first non-orthologous sequence - A.darlingi:243 C.trachomatis:243

E3X8A9              	100.00%		O84787              	100.00%
Bootstrap support for E3X8A9 as seed ortholog is 100%.
Bootstrap support for O84787 as seed ortholog is 100%.

Group of orthologs #44. Best score 241 bits
Score difference with first non-orthologous sequence - A.darlingi:108 C.trachomatis:241

E3WM93              	100.00%		O84732              	100.00%
E3XGD1              	54.48%		
Bootstrap support for E3WM93 as seed ortholog is 98%.
Bootstrap support for O84732 as seed ortholog is 100%.

Group of orthologs #45. Best score 232 bits
Score difference with first non-orthologous sequence - A.darlingi:232 C.trachomatis:232

E3XFL0              	100.00%		O84642              	100.00%
E3X8U1              	10.09%		
Bootstrap support for E3XFL0 as seed ortholog is 100%.
Bootstrap support for O84642 as seed ortholog is 100%.

Group of orthologs #46. Best score 232 bits
Score difference with first non-orthologous sequence - A.darlingi:232 C.trachomatis:232

E3X697              	100.00%		O84562              	100.00%
Bootstrap support for E3X697 as seed ortholog is 100%.
Bootstrap support for O84562 as seed ortholog is 100%.

Group of orthologs #47. Best score 230 bits
Score difference with first non-orthologous sequence - A.darlingi:230 C.trachomatis:230

E3X6P1              	100.00%		P36431              	100.00%
Bootstrap support for E3X6P1 as seed ortholog is 100%.
Bootstrap support for P36431 as seed ortholog is 100%.

Group of orthologs #48. Best score 215 bits
Score difference with first non-orthologous sequence - A.darlingi:215 C.trachomatis:79

E3WTW2              	100.00%		O84028              	100.00%
Bootstrap support for E3WTW2 as seed ortholog is 100%.
Bootstrap support for O84028 as seed ortholog is 98%.

Group of orthologs #49. Best score 214 bits
Score difference with first non-orthologous sequence - A.darlingi:214 C.trachomatis:214

E3WR39              	100.00%		O84812              	100.00%
Bootstrap support for E3WR39 as seed ortholog is 100%.
Bootstrap support for O84812 as seed ortholog is 100%.

Group of orthologs #50. Best score 213 bits
Score difference with first non-orthologous sequence - A.darlingi:213 C.trachomatis:213

E3WKQ7              	100.00%		O84596              	100.00%
Bootstrap support for E3WKQ7 as seed ortholog is 100%.
Bootstrap support for O84596 as seed ortholog is 100%.

Group of orthologs #51. Best score 209 bits
Score difference with first non-orthologous sequence - A.darlingi:209 C.trachomatis:209

E3XA52              	100.00%		O84066              	100.00%
Bootstrap support for E3XA52 as seed ortholog is 100%.
Bootstrap support for O84066 as seed ortholog is 100%.

Group of orthologs #52. Best score 208 bits
Score difference with first non-orthologous sequence - A.darlingi:32 C.trachomatis:208

E3WW64              	100.00%		O84423              	100.00%
Bootstrap support for E3WW64 as seed ortholog is 92%.
Bootstrap support for O84423 as seed ortholog is 100%.

Group of orthologs #53. Best score 206 bits
Score difference with first non-orthologous sequence - A.darlingi:14 C.trachomatis:206

E3WJN7              	100.00%		O84248              	100.00%
Bootstrap support for E3WJN7 as seed ortholog is 65%.
Alternative seed ortholog is E3X1A9 (14 bits away from this cluster)
Bootstrap support for O84248 as seed ortholog is 100%.

Group of orthologs #54. Best score 205 bits
Score difference with first non-orthologous sequence - A.darlingi:205 C.trachomatis:205

E3XEA4              	100.00%		O84296              	100.00%
Bootstrap support for E3XEA4 as seed ortholog is 100%.
Bootstrap support for O84296 as seed ortholog is 100%.

Group of orthologs #55. Best score 201 bits
Score difference with first non-orthologous sequence - A.darlingi:201 C.trachomatis:201

E3XFQ3              	100.00%		O84196              	100.00%
Bootstrap support for E3XFQ3 as seed ortholog is 100%.
Bootstrap support for O84196 as seed ortholog is 100%.

Group of orthologs #56. Best score 200 bits
Score difference with first non-orthologous sequence - A.darlingi:138 C.trachomatis:200

E3XFH6              	100.00%		O84297              	100.00%
Bootstrap support for E3XFH6 as seed ortholog is 99%.
Bootstrap support for O84297 as seed ortholog is 100%.

Group of orthologs #57. Best score 192 bits
Score difference with first non-orthologous sequence - A.darlingi:108 C.trachomatis:192

E3WKW2              	100.00%		O84608              	100.00%
Bootstrap support for E3WKW2 as seed ortholog is 99%.
Bootstrap support for O84608 as seed ortholog is 100%.

Group of orthologs #58. Best score 189 bits
Score difference with first non-orthologous sequence - A.darlingi:189 C.trachomatis:189

E3WKV2              	100.00%		O84332              	100.00%
Bootstrap support for E3WKV2 as seed ortholog is 100%.
Bootstrap support for O84332 as seed ortholog is 100%.

Group of orthologs #59. Best score 186 bits
Score difference with first non-orthologous sequence - A.darlingi:1 C.trachomatis:186

E3X9F5              	100.00%		O84859              	100.00%
Bootstrap support for E3X9F5 as seed ortholog is 47%.
Alternative seed ortholog is E3WWC6 (1 bits away from this cluster)
Bootstrap support for O84859 as seed ortholog is 100%.

Group of orthologs #60. Best score 182 bits
Score difference with first non-orthologous sequence - A.darlingi:182 C.trachomatis:78

E3WQZ7              	100.00%		O84406              	100.00%
E3X3Z0              	12.62%		
Bootstrap support for E3WQZ7 as seed ortholog is 100%.
Bootstrap support for O84406 as seed ortholog is 99%.

Group of orthologs #61. Best score 177 bits
Score difference with first non-orthologous sequence - A.darlingi:43 C.trachomatis:177

E3WP11              	100.00%		O84345              	100.00%
Bootstrap support for E3WP11 as seed ortholog is 73%.
Alternative seed ortholog is E3XAX2 (43 bits away from this cluster)
Bootstrap support for O84345 as seed ortholog is 100%.

Group of orthologs #62. Best score 176 bits
Score difference with first non-orthologous sequence - A.darlingi:176 C.trachomatis:176

E3X3J9              	100.00%		O84638              	100.00%
Bootstrap support for E3X3J9 as seed ortholog is 100%.
Bootstrap support for O84638 as seed ortholog is 100%.

Group of orthologs #63. Best score 175 bits
Score difference with first non-orthologous sequence - A.darlingi:67 C.trachomatis:175

E3WTY2              	100.00%		O84247              	100.00%
E3XDC7              	55.81%		
Bootstrap support for E3WTY2 as seed ortholog is 97%.
Bootstrap support for O84247 as seed ortholog is 100%.

Group of orthologs #64. Best score 173 bits
Score difference with first non-orthologous sequence - A.darlingi:44 C.trachomatis:173

E3XEC7              	100.00%		O84676              	100.00%
                    	       		O84722              	11.18%
Bootstrap support for E3XEC7 as seed ortholog is 86%.
Bootstrap support for O84676 as seed ortholog is 100%.

Group of orthologs #65. Best score 172 bits
Score difference with first non-orthologous sequence - A.darlingi:172 C.trachomatis:172

E3X7Y2              	100.00%		O84720              	100.00%
Bootstrap support for E3X7Y2 as seed ortholog is 100%.
Bootstrap support for O84720 as seed ortholog is 100%.

Group of orthologs #66. Best score 167 bits
Score difference with first non-orthologous sequence - A.darlingi:167 C.trachomatis:167

E3WYH2              	100.00%		O84561              	100.00%
Bootstrap support for E3WYH2 as seed ortholog is 100%.
Bootstrap support for O84561 as seed ortholog is 100%.

Group of orthologs #67. Best score 166 bits
Score difference with first non-orthologous sequence - A.darlingi:166 C.trachomatis:40

E3XA42              	100.00%		O84712              	100.00%
Bootstrap support for E3XA42 as seed ortholog is 100%.
Bootstrap support for O84712 as seed ortholog is 97%.

Group of orthologs #68. Best score 161 bits
Score difference with first non-orthologous sequence - A.darlingi:21 C.trachomatis:161

E3WKK3              	100.00%		O84734              	100.00%
Bootstrap support for E3WKK3 as seed ortholog is 68%.
Alternative seed ortholog is E3WP46 (21 bits away from this cluster)
Bootstrap support for O84734 as seed ortholog is 100%.

Group of orthologs #69. Best score 160 bits
Score difference with first non-orthologous sequence - A.darlingi:160 C.trachomatis:160

E3WKG7              	100.00%		O84360              	100.00%
Bootstrap support for E3WKG7 as seed ortholog is 100%.
Bootstrap support for O84360 as seed ortholog is 100%.

Group of orthologs #70. Best score 159 bits
Score difference with first non-orthologous sequence - A.darlingi:159 C.trachomatis:159

E3XF57              	100.00%		O84727              	100.00%
E3X498              	28.21%		
Bootstrap support for E3XF57 as seed ortholog is 100%.
Bootstrap support for O84727 as seed ortholog is 100%.

Group of orthologs #71. Best score 156 bits
Score difference with first non-orthologous sequence - A.darlingi:30 C.trachomatis:156

E3X571              	100.00%		O84058              	100.00%
Bootstrap support for E3X571 as seed ortholog is 56%.
Alternative seed ortholog is E3WLG0 (30 bits away from this cluster)
Bootstrap support for O84058 as seed ortholog is 100%.

Group of orthologs #72. Best score 155 bits
Score difference with first non-orthologous sequence - A.darlingi:155 C.trachomatis:155

E3X7Z4              	100.00%		O84460              	100.00%
Bootstrap support for E3X7Z4 as seed ortholog is 100%.
Bootstrap support for O84460 as seed ortholog is 100%.

Group of orthologs #73. Best score 154 bits
Score difference with first non-orthologous sequence - A.darlingi:154 C.trachomatis:154

E3WVL9              	100.00%		O84456              	100.00%
Bootstrap support for E3WVL9 as seed ortholog is 100%.
Bootstrap support for O84456 as seed ortholog is 100%.

Group of orthologs #74. Best score 153 bits
Score difference with first non-orthologous sequence - A.darlingi:88 C.trachomatis:153

E3X4A2              	100.00%		O84234              	100.00%
E3WLJ4              	22.78%		
E3X056              	16.06%		
E3WXH6              	15.78%		
E3WJP1              	13.94%		
E3WJ54              	13.54%		
E3WVP7              	13.14%		
E3WJP2              	11.65%		
E3WUV1              	10.27%		
E3WJP6              	9.24%		
E3WPI0              	9.06%		
E3WJP4              	8.84%		
Bootstrap support for E3X4A2 as seed ortholog is 98%.
Bootstrap support for O84234 as seed ortholog is 100%.

Group of orthologs #75. Best score 152 bits
Score difference with first non-orthologous sequence - A.darlingi:152 C.trachomatis:152

E3XC91              	100.00%		P18584              	100.00%
Bootstrap support for E3XC91 as seed ortholog is 100%.
Bootstrap support for P18584 as seed ortholog is 100%.

Group of orthologs #76. Best score 147 bits
Score difference with first non-orthologous sequence - A.darlingi:16 C.trachomatis:147

E3WYM3              	100.00%		O84266              	100.00%
Bootstrap support for E3WYM3 as seed ortholog is 65%.
Alternative seed ortholog is E3WTL6 (16 bits away from this cluster)
Bootstrap support for O84266 as seed ortholog is 100%.

Group of orthologs #77. Best score 144 bits
Score difference with first non-orthologous sequence - A.darlingi:144 C.trachomatis:144

E3X6G0              	100.00%		O84752              	100.00%
Bootstrap support for E3X6G0 as seed ortholog is 100%.
Bootstrap support for O84752 as seed ortholog is 100%.

Group of orthologs #78. Best score 144 bits
Score difference with first non-orthologous sequence - A.darlingi:38 C.trachomatis:82

E3X9N9              	100.00%		O84546              	100.00%
Bootstrap support for E3X9N9 as seed ortholog is 86%.
Bootstrap support for O84546 as seed ortholog is 96%.

Group of orthologs #79. Best score 142 bits
Score difference with first non-orthologous sequence - A.darlingi:142 C.trachomatis:142

E3X5H9              	100.00%		O84049              	100.00%
Bootstrap support for E3X5H9 as seed ortholog is 100%.
Bootstrap support for O84049 as seed ortholog is 100%.

Group of orthologs #80. Best score 141 bits
Score difference with first non-orthologous sequence - A.darlingi:141 C.trachomatis:141

E3WXK9              	100.00%		O84864              	100.00%
E3X4H6              	31.14%		
E3WXL0              	30.65%		
E3X9K5              	23.98%		
E3WXL1              	23.58%		
Bootstrap support for E3WXK9 as seed ortholog is 100%.
Bootstrap support for O84864 as seed ortholog is 100%.

Group of orthologs #81. Best score 141 bits
Score difference with first non-orthologous sequence - A.darlingi:141 C.trachomatis:141

E3WNB9              	100.00%		O84874              	100.00%
Bootstrap support for E3WNB9 as seed ortholog is 100%.
Bootstrap support for O84874 as seed ortholog is 100%.

Group of orthologs #82. Best score 141 bits
Score difference with first non-orthologous sequence - A.darlingi:141 C.trachomatis:141

E3X8J9              	100.00%		O84383              	100.00%
Bootstrap support for E3X8J9 as seed ortholog is 100%.
Bootstrap support for O84383 as seed ortholog is 100%.

Group of orthologs #83. Best score 139 bits
Score difference with first non-orthologous sequence - A.darlingi:139 C.trachomatis:40

E3X863              	100.00%		O84260              	100.00%
Bootstrap support for E3X863 as seed ortholog is 100%.
Bootstrap support for O84260 as seed ortholog is 83%.

Group of orthologs #84. Best score 137 bits
Score difference with first non-orthologous sequence - A.darlingi:15 C.trachomatis:137

E3X653              	100.00%		P38004              	100.00%
E3WU92              	40.17%		
Bootstrap support for E3X653 as seed ortholog is 74%.
Alternative seed ortholog is E3WWD0 (15 bits away from this cluster)
Bootstrap support for P38004 as seed ortholog is 100%.

Group of orthologs #85. Best score 134 bits
Score difference with first non-orthologous sequence - A.darlingi:134 C.trachomatis:134

E3XAA8              	100.00%		O84274              	100.00%
Bootstrap support for E3XAA8 as seed ortholog is 100%.
Bootstrap support for O84274 as seed ortholog is 100%.

Group of orthologs #86. Best score 131 bits
Score difference with first non-orthologous sequence - A.darlingi:131 C.trachomatis:131

E3WT49              	100.00%		O84835              	100.00%
Bootstrap support for E3WT49 as seed ortholog is 100%.
Bootstrap support for O84835 as seed ortholog is 100%.

Group of orthologs #87. Best score 119 bits
Score difference with first non-orthologous sequence - A.darlingi:62 C.trachomatis:119

E3X023              	100.00%		O84033              	100.00%
Bootstrap support for E3X023 as seed ortholog is 99%.
Bootstrap support for O84033 as seed ortholog is 100%.

Group of orthologs #88. Best score 113 bits
Score difference with first non-orthologous sequence - A.darlingi:113 C.trachomatis:113

E3WTG0              	100.00%		O84098              	100.00%
Bootstrap support for E3WTG0 as seed ortholog is 100%.
Bootstrap support for O84098 as seed ortholog is 100%.

Group of orthologs #89. Best score 111 bits
Score difference with first non-orthologous sequence - A.darlingi:111 C.trachomatis:111

E3WT91              	100.00%		O84508              	100.00%
Bootstrap support for E3WT91 as seed ortholog is 100%.
Bootstrap support for O84508 as seed ortholog is 100%.

Group of orthologs #90. Best score 110 bits
Score difference with first non-orthologous sequence - A.darlingi:51 C.trachomatis:110

E3WLZ3              	100.00%		O84548              	100.00%
Bootstrap support for E3WLZ3 as seed ortholog is 76%.
Bootstrap support for O84548 as seed ortholog is 100%.

Group of orthologs #91. Best score 103 bits
Score difference with first non-orthologous sequence - A.darlingi:32 C.trachomatis:103

E3XGD8              	100.00%		O84130              	100.00%
Bootstrap support for E3XGD8 as seed ortholog is 83%.
Bootstrap support for O84130 as seed ortholog is 100%.

Group of orthologs #92. Best score 103 bits
Score difference with first non-orthologous sequence - A.darlingi:103 C.trachomatis:103

E3XF90              	100.00%		O84843              	100.00%
Bootstrap support for E3XF90 as seed ortholog is 100%.
Bootstrap support for O84843 as seed ortholog is 100%.

Group of orthologs #93. Best score 99 bits
Score difference with first non-orthologous sequence - A.darlingi:18 C.trachomatis:99

E3XFQ2              	100.00%		O84781              	100.00%
E3XCS6              	12.25%		
Bootstrap support for E3XFQ2 as seed ortholog is 66%.
Alternative seed ortholog is E3X6W5 (18 bits away from this cluster)
Bootstrap support for O84781 as seed ortholog is 100%.

Group of orthologs #94. Best score 99 bits
Score difference with first non-orthologous sequence - A.darlingi:22 C.trachomatis:99

E3X248              	100.00%		O84035              	100.00%
Bootstrap support for E3X248 as seed ortholog is 72%.
Alternative seed ortholog is E3WZR6 (22 bits away from this cluster)
Bootstrap support for O84035 as seed ortholog is 100%.

Group of orthologs #95. Best score 99 bits
Score difference with first non-orthologous sequence - A.darlingi:20 C.trachomatis:99

E3XDI3              	100.00%		O84358              	100.00%
Bootstrap support for E3XDI3 as seed ortholog is 72%.
Alternative seed ortholog is E3XCH3 (20 bits away from this cluster)
Bootstrap support for O84358 as seed ortholog is 100%.

Group of orthologs #96. Best score 98 bits
Score difference with first non-orthologous sequence - A.darlingi:98 C.trachomatis:98

E3X8Y7              	100.00%		O84215              	100.00%
Bootstrap support for E3X8Y7 as seed ortholog is 100%.
Bootstrap support for O84215 as seed ortholog is 100%.

Group of orthologs #97. Best score 96 bits
Score difference with first non-orthologous sequence - A.darlingi:96 C.trachomatis:96

E3WQK1              	100.00%		O84123              	100.00%
Bootstrap support for E3WQK1 as seed ortholog is 100%.
Bootstrap support for O84123 as seed ortholog is 100%.

Group of orthologs #98. Best score 96 bits
Score difference with first non-orthologous sequence - A.darlingi:45 C.trachomatis:96

E3WVR4              	100.00%		P66370              	100.00%
Bootstrap support for E3WVR4 as seed ortholog is 98%.
Bootstrap support for P66370 as seed ortholog is 100%.

Group of orthologs #99. Best score 96 bits
Score difference with first non-orthologous sequence - A.darlingi:96 C.trachomatis:96

E3X9C6              	100.00%		O84442              	100.00%
Bootstrap support for E3X9C6 as seed ortholog is 100%.
Bootstrap support for O84442 as seed ortholog is 100%.

Group of orthologs #100. Best score 94 bits
Score difference with first non-orthologous sequence - A.darlingi:94 C.trachomatis:94

E3XE51              	100.00%		O84321              	100.00%
Bootstrap support for E3XE51 as seed ortholog is 100%.
Bootstrap support for O84321 as seed ortholog is 100%.

Group of orthologs #101. Best score 92 bits
Score difference with first non-orthologous sequence - A.darlingi:47 C.trachomatis:92

E3WPZ0              	100.00%		O84027              	100.00%
Bootstrap support for E3WPZ0 as seed ortholog is 92%.
Bootstrap support for O84027 as seed ortholog is 100%.

Group of orthologs #102. Best score 91 bits
Score difference with first non-orthologous sequence - A.darlingi:16 C.trachomatis:91

B6DDR9              	100.00%		O84530              	100.00%
Bootstrap support for B6DDR9 as seed ortholog is 67%.
Alternative seed ortholog is E3WPM5 (16 bits away from this cluster)
Bootstrap support for O84530 as seed ortholog is 100%.

Group of orthologs #103. Best score 91 bits
Score difference with first non-orthologous sequence - A.darlingi:91 C.trachomatis:91

E3WSL8              	100.00%		P0CE06              	100.00%
Bootstrap support for E3WSL8 as seed ortholog is 100%.
Bootstrap support for P0CE06 as seed ortholog is 100%.

Group of orthologs #104. Best score 91 bits
Score difference with first non-orthologous sequence - A.darlingi:91 C.trachomatis:91

E3X9E8              	100.00%		O84750              	100.00%
Bootstrap support for E3X9E8 as seed ortholog is 100%.
Bootstrap support for O84750 as seed ortholog is 100%.

Group of orthologs #105. Best score 90 bits
Score difference with first non-orthologous sequence - A.darlingi:90 C.trachomatis:90

E3X9G5              	100.00%		O84390              	100.00%
Bootstrap support for E3X9G5 as seed ortholog is 100%.
Bootstrap support for O84390 as seed ortholog is 100%.

Group of orthologs #106. Best score 89 bits
Score difference with first non-orthologous sequence - A.darlingi:22 C.trachomatis:89

E3WVH5              	100.00%		O84660              	100.00%
Bootstrap support for E3WVH5 as seed ortholog is 79%.
Bootstrap support for O84660 as seed ortholog is 100%.

Group of orthologs #107. Best score 88 bits
Score difference with first non-orthologous sequence - A.darlingi:88 C.trachomatis:88

E3WT34              	100.00%		O84782              	100.00%
E3X3Y5              	10.63%		
Bootstrap support for E3WT34 as seed ortholog is 100%.
Bootstrap support for O84782 as seed ortholog is 100%.

Group of orthologs #108. Best score 82 bits
Score difference with first non-orthologous sequence - A.darlingi:82 C.trachomatis:82

E3WT68              	100.00%		O84599              	100.00%
Bootstrap support for E3WT68 as seed ortholog is 100%.
Bootstrap support for O84599 as seed ortholog is 100%.

Group of orthologs #109. Best score 81 bits
Score difference with first non-orthologous sequence - A.darlingi:81 C.trachomatis:81

E3WJI7              	100.00%		O84391              	100.00%
Bootstrap support for E3WJI7 as seed ortholog is 100%.
Bootstrap support for O84391 as seed ortholog is 100%.

Group of orthologs #110. Best score 79 bits
Score difference with first non-orthologous sequence - A.darlingi:79 C.trachomatis:79

E3WXX0              	100.00%		O84547              	100.00%
E3XDS7              	48.07%		
Bootstrap support for E3WXX0 as seed ortholog is 100%.
Bootstrap support for O84547 as seed ortholog is 100%.

Group of orthologs #111. Best score 78 bits
Score difference with first non-orthologous sequence - A.darlingi:78 C.trachomatis:78

E3WZZ3              	100.00%		O84851              	100.00%
Bootstrap support for E3WZZ3 as seed ortholog is 100%.
Bootstrap support for O84851 as seed ortholog is 100%.

Group of orthologs #112. Best score 77 bits
Score difference with first non-orthologous sequence - A.darlingi:77 C.trachomatis:77

E3X5A8              	100.00%		P36424              	100.00%
Bootstrap support for E3X5A8 as seed ortholog is 100%.
Bootstrap support for P36424 as seed ortholog is 100%.

Group of orthologs #113. Best score 76 bits
Score difference with first non-orthologous sequence - A.darlingi:76 C.trachomatis:76

E3WJ00              	100.00%		O84500              	100.00%
Bootstrap support for E3WJ00 as seed ortholog is 100%.
Bootstrap support for O84500 as seed ortholog is 100%.

Group of orthologs #114. Best score 76 bits
Score difference with first non-orthologous sequence - A.darlingi:76 C.trachomatis:76

E3XCA5              	100.00%		P0CD79              	100.00%
Bootstrap support for E3XCA5 as seed ortholog is 100%.
Bootstrap support for P0CD79 as seed ortholog is 100%.

Group of orthologs #115. Best score 75 bits
Score difference with first non-orthologous sequence - A.darlingi:75 C.trachomatis:75

E3WZ73              	100.00%		O84686              	100.00%
Bootstrap support for E3WZ73 as seed ortholog is 100%.
Bootstrap support for O84686 as seed ortholog is 100%.

Group of orthologs #116. Best score 75 bits
Score difference with first non-orthologous sequence - A.darlingi:75 C.trachomatis:75

E3X451              	100.00%		O84544              	100.00%
Bootstrap support for E3X451 as seed ortholog is 100%.
Bootstrap support for O84544 as seed ortholog is 100%.

Group of orthologs #117. Best score 74 bits
Score difference with first non-orthologous sequence - A.darlingi:74 C.trachomatis:74

E3XBI2              	100.00%		O84200              	100.00%
Bootstrap support for E3XBI2 as seed ortholog is 100%.
Bootstrap support for O84200 as seed ortholog is 100%.

Group of orthologs #118. Best score 71 bits
Score difference with first non-orthologous sequence - A.darlingi:10 C.trachomatis:71

E3WZX2              	100.00%		O84469              	100.00%
Bootstrap support for E3WZX2 as seed ortholog is 59%.
Alternative seed ortholog is E3WJI8 (10 bits away from this cluster)
Bootstrap support for O84469 as seed ortholog is 100%.

Group of orthologs #119. Best score 70 bits
Score difference with first non-orthologous sequence - A.darlingi:70 C.trachomatis:70

B6DDR5              	100.00%		P0CE03              	100.00%
E3X6H1              	100.00%		
Bootstrap support for B6DDR5 as seed ortholog is 100%.
Bootstrap support for E3X6H1 as seed ortholog is 100%.
Bootstrap support for P0CE03 as seed ortholog is 100%.

Group of orthologs #120. Best score 70 bits
Score difference with first non-orthologous sequence - A.darlingi:70 C.trachomatis:70

E3X5V5              	100.00%		O84611              	100.00%
Bootstrap support for E3X5V5 as seed ortholog is 100%.
Bootstrap support for O84611 as seed ortholog is 100%.

Group of orthologs #121. Best score 69 bits
Score difference with first non-orthologous sequence - A.darlingi:69 C.trachomatis:69

E3WZB9              	100.00%		O84212              	100.00%
E3XCK7              	15.14%		
Bootstrap support for E3WZB9 as seed ortholog is 100%.
Bootstrap support for O84212 as seed ortholog is 100%.

Group of orthologs #122. Best score 69 bits
Score difference with first non-orthologous sequence - A.darlingi:69 C.trachomatis:69

E3WK61              	100.00%		O84189              	100.00%
Bootstrap support for E3WK61 as seed ortholog is 100%.
Bootstrap support for O84189 as seed ortholog is 100%.

Group of orthologs #123. Best score 68 bits
Score difference with first non-orthologous sequence - A.darlingi:68 C.trachomatis:68

E3WRY2              	100.00%		O84415              	100.00%
                    	       		O84710              	11.33%
Bootstrap support for E3WRY2 as seed ortholog is 100%.
Bootstrap support for O84415 as seed ortholog is 100%.

Group of orthologs #124. Best score 67 bits
Score difference with first non-orthologous sequence - A.darlingi:67 C.trachomatis:67

E3WQD8              	100.00%		O84578              	100.00%
E3WS11              	42.03%		
E3WJK3              	25.75%		
Bootstrap support for E3WQD8 as seed ortholog is 100%.
Bootstrap support for O84578 as seed ortholog is 100%.

Group of orthologs #125. Best score 67 bits
Score difference with first non-orthologous sequence - A.darlingi:67 C.trachomatis:67

E3XFE3              	100.00%		O84684              	100.00%
Bootstrap support for E3XFE3 as seed ortholog is 100%.
Bootstrap support for O84684 as seed ortholog is 100%.

Group of orthologs #126. Best score 66 bits
Score difference with first non-orthologous sequence - A.darlingi:66 C.trachomatis:66

E3WUD4              	100.00%		P0CE04              	100.00%
Bootstrap support for E3WUD4 as seed ortholog is 100%.
Bootstrap support for P0CE04 as seed ortholog is 100%.

Group of orthologs #127. Best score 64 bits
Score difference with first non-orthologous sequence - A.darlingi:64 C.trachomatis:64

E3WUL2              	100.00%		O84779              	100.00%
E3XFS4              	16.52%		
Bootstrap support for E3WUL2 as seed ortholog is 100%.
Bootstrap support for O84779 as seed ortholog is 100%.

Group of orthologs #128. Best score 63 bits
Score difference with first non-orthologous sequence - A.darlingi:63 C.trachomatis:63

E3X4W1              	100.00%		O84139              	100.00%
Bootstrap support for E3X4W1 as seed ortholog is 100%.
Bootstrap support for O84139 as seed ortholog is 100%.

Group of orthologs #129. Best score 61 bits
Score difference with first non-orthologous sequence - A.darlingi:61 C.trachomatis:61

E3WUI5              	100.00%		O84680              	100.00%
E3WJ97              	18.54%		
E3WXL3              	14.38%		
E3X7R4              	10.57%		
E3X9B0              	9.36%		
E3XEW5              	9.36%		
E3WN69              	8.84%		
E3WPS2              	8.84%		
E3WM14              	8.15%		
E3X3C3              	7.80%		
E3XBE1              	7.45%		
E3XAY4              	7.28%		
E3WTB9              	7.28%		
E3WSY4              	6.59%		
E3WJ70              	6.41%		
E3WKL2              	6.24%		
E3WRM0              	6.07%		
E3X6D7              	5.89%		
E3X192              	5.37%		
E3X974              	5.37%		
E3WUK2              	5.20%		
Bootstrap support for E3WUI5 as seed ortholog is 100%.
Bootstrap support for O84680 as seed ortholog is 100%.

Group of orthologs #130. Best score 59 bits
Score difference with first non-orthologous sequence - A.darlingi:59 C.trachomatis:59

E3X6Y5              	100.00%		O84792              	100.00%
Bootstrap support for E3X6Y5 as seed ortholog is 100%.
Bootstrap support for O84792 as seed ortholog is 100%.

Group of orthologs #131. Best score 59 bits
Score difference with first non-orthologous sequence - A.darlingi:59 C.trachomatis:59

E3X6S9              	100.00%		P0C0Z8              	100.00%
Bootstrap support for E3X6S9 as seed ortholog is 100%.
Bootstrap support for P0C0Z8 as seed ortholog is 100%.

Group of orthologs #132. Best score 58 bits
Score difference with first non-orthologous sequence - A.darlingi:58 C.trachomatis:58

E3WZY4              	100.00%		O84128              	100.00%
Bootstrap support for E3WZY4 as seed ortholog is 100%.
Bootstrap support for O84128 as seed ortholog is 100%.

Group of orthologs #133. Best score 57 bits
Score difference with first non-orthologous sequence - A.darlingi:57 C.trachomatis:57

E3X499              	100.00%		O84108              	100.00%
                    	       		O84665              	10.27%
Bootstrap support for E3X499 as seed ortholog is 100%.
Bootstrap support for O84108 as seed ortholog is 100%.

Group of orthologs #134. Best score 57 bits
Score difference with first non-orthologous sequence - A.darlingi:57 C.trachomatis:57

E3X4S9              	100.00%		P0A4C8              	100.00%
Bootstrap support for E3X4S9 as seed ortholog is 100%.
Bootstrap support for P0A4C8 as seed ortholog is 100%.

Group of orthologs #135. Best score 56 bits
Score difference with first non-orthologous sequence - A.darlingi:56 C.trachomatis:56

E3WVZ8              	100.00%		O84205              	100.00%
                    	       		O84695              	20.28%
                    	       		O84204              	17.48%
                    	       		O84696              	17.25%
                    	       		O84132              	10.02%
                    	       		O84071              	5.36%
Bootstrap support for E3WVZ8 as seed ortholog is 100%.
Bootstrap support for O84205 as seed ortholog is 100%.

Group of orthologs #136. Best score 56 bits
Score difference with first non-orthologous sequence - A.darlingi:56 C.trachomatis:56

E3WVU2              	100.00%		O84527              	100.00%
Bootstrap support for E3WVU2 as seed ortholog is 100%.
Bootstrap support for O84527 as seed ortholog is 100%.

Group of orthologs #137. Best score 54 bits
Score difference with first non-orthologous sequence - A.darlingi:54 C.trachomatis:54

E3WTU3              	100.00%		O84395              	100.00%
Bootstrap support for E3WTU3 as seed ortholog is 100%.
Bootstrap support for O84395 as seed ortholog is 100%.

Group of orthologs #138. Best score 53 bits
Score difference with first non-orthologous sequence - A.darlingi:53 C.trachomatis:53

B6DDV2              	100.00%		P66480              	100.00%
Bootstrap support for B6DDV2 as seed ortholog is 100%.
Bootstrap support for P66480 as seed ortholog is 100%.

Group of orthologs #139. Best score 52 bits
Score difference with first non-orthologous sequence - A.darlingi:11 C.trachomatis:52

B6DDS4              	100.00%		P0CE02              	100.00%
Bootstrap support for B6DDS4 as seed ortholog is 69%.
Alternative seed ortholog is E3X1F7 (11 bits away from this cluster)
Bootstrap support for P0CE02 as seed ortholog is 100%.

Group of orthologs #140. Best score 48 bits
Score difference with first non-orthologous sequence - A.darlingi:48 C.trachomatis:48

E3WNX3              	100.00%		P0CD80              	100.00%
Bootstrap support for E3WNX3 as seed ortholog is 100%.
Bootstrap support for P0CD80 as seed ortholog is 100%.

Group of orthologs #141. Best score 47 bits
Score difference with first non-orthologous sequence - A.darlingi:47 C.trachomatis:47

E3X8M1              	100.00%		O84496              	100.00%
E3XAF1              	17.17%		
Bootstrap support for E3X8M1 as seed ortholog is 100%.
Bootstrap support for O84496 as seed ortholog is 100%.

Group of orthologs #142. Best score 46 bits
Score difference with first non-orthologous sequence - A.darlingi:46 C.trachomatis:46

E3WMV1              	100.00%		O84658              	100.00%
Bootstrap support for E3WMV1 as seed ortholog is 100%.
Bootstrap support for O84658 as seed ortholog is 100%.

Group of orthologs #143. Best score 45 bits
Score difference with first non-orthologous sequence - A.darlingi:45 C.trachomatis:45

E3X5A6              	100.00%		P0CD81              	100.00%
Bootstrap support for E3X5A6 as seed ortholog is 100%.
Bootstrap support for P0CD81 as seed ortholog is 100%.

Group of orthologs #144. Best score 44 bits
Score difference with first non-orthologous sequence - A.darlingi:44 C.trachomatis:44

E3X0R9              	100.00%		O84219              	100.00%
Bootstrap support for E3X0R9 as seed ortholog is 100%.
Bootstrap support for O84219 as seed ortholog is 100%.