<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1267" inparalogs="3808"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    </database>
    <notes>
      <additionalInformation abbreviation="R.delemar" link="http://www.uniprot.org/taxonomy/246409"/>
    </notes>
  </species>
  <species name="Trypanosoma cruzi " NCBITaxId="5693">
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        <gene id="3247" protId="K4EC55" geneId="TCSYLVIO_001067"/>
        <gene id="3249" protId="K4E7K4" geneId="TCSYLVIO_002281"/>
        <gene id="3251" protId="K4EB15" geneId="TCSYLVIO_001296"/>
        <gene id="3259" protId="K4E714" geneId="TCSYLVIO_002742"/>
        <gene id="3264" protId="K4EA07" geneId="TCSYLVIO_001395"/>
        <gene id="3266" protId="K4DQV7" geneId="TCSYLVIO_008388"/>
        <gene id="3275" protId="K4DU77" geneId="TCSYLVIO_007073"/>
        <gene id="3276" protId="K4E9W2" geneId="TCSYLVIO_001430"/>
        <gene id="3277" protId="K4DW82" geneId="TCSYLVIO_006560"/>
        <gene id="3278" protId="K4E483" geneId="TCSYLVIO_003953"/>
        <gene id="3279" protId="K4EBW1" geneId="TCSYLVIO_001156"/>
        <gene id="3280" protId="K4DV51" geneId="TCSYLVIO_007155"/>
        <gene id="3283" protId="K4DUI9" geneId="TCSYLVIO_007034"/>
        <gene id="3285" protId="K4E6Y1" geneId="TCSYLVIO_002637"/>
        <gene id="3287" protId="K4E1J1" geneId="TCSYLVIO_004444"/>
        <gene id="3298" protId="K4DXR0" geneId="TCSYLVIO_005834"/>
        <gene id="3301" protId="K4EDW5" geneId="TCSYLVIO_000001"/>
        <gene id="3303" protId="K4DYM7" geneId="TCSYLVIO_005716"/>
        <gene id="3305" protId="K4E391" geneId="TCSYLVIO_004056"/>
        <gene id="3307" protId="K4E7V9" geneId="TCSYLVIO_002389"/>
        <gene id="3309" protId="K4E7R0" geneId="TCSYLVIO_002669"/>
        <gene id="3312" protId="K4E3B2" geneId="TCSYLVIO_003911"/>
        <gene id="3313" protId="K4DML9" geneId="TCSYLVIO_009589"/>
        <gene id="3315" protId="K4DM04" geneId="TCSYLVIO_009746"/>
        <gene id="3317" protId="K4E6E6" geneId="TCSYLVIO_002860"/>
        <gene id="3319" protId="K4E9S7" geneId="TCSYLVIO_001621"/>
        <gene id="3322" protId="K4E5Q3" geneId="TCSYLVIO_002977"/>
        <gene id="3324" protId="K4EEA4" geneId="TCSYLVIO_000207"/>
        <gene id="3325" protId="K4EE10" geneId="TCSYLVIO_000206"/>
        <gene id="3327" protId="K4DYF8" geneId="TCSYLVIO_005815"/>
        <gene id="3329" protId="K4E376" geneId="TCSYLVIO_003869"/>
        <gene id="3338" protId="K4EDS5" geneId="TCSYLVIO_000464"/>
        <gene id="3341" protId="K4DJJ8" geneId="TCSYLVIO_010757"/>
        <gene id="3342" protId="K4ECF9" geneId="TCSYLVIO_000782"/>
        <gene id="3343" protId="K4DQ79" geneId="TCSYLVIO_008649"/>
        <gene id="3345" protId="K4DXJ9" geneId="TCSYLVIO_005867"/>
        <gene id="3346" protId="K4DY39" geneId="TCSYLVIO_005784"/>
        <gene id="3348" protId="K4E9B4" geneId="TCSYLVIO_001687"/>
        <gene id="3350" protId="K4E4L6" geneId="TCSYLVIO_003559"/>
        <gene id="3351" protId="K4E3W1" geneId="TCSYLVIO_003620"/>
        <gene id="3353" protId="K4E5Y8" geneId="TCSYLVIO_002979"/>
        <gene id="3355" protId="K4EBA2" geneId="TCSYLVIO_001198"/>
        <gene id="3357" protId="K4ECS4" geneId="TCSYLVIO_000476"/>
        <gene id="3359" protId="K4DU59" geneId="TCSYLVIO_007336"/>
        <gene id="3362" protId="K4E3U9" geneId="TCSYLVIO_003747"/>
        <gene id="3365" protId="K4EBB2" geneId="TCSYLVIO_001183"/>
        <gene id="3367" protId="K4DQS9" geneId="TCSYLVIO_008415"/>
        <gene id="3369" protId="K4E9S4" geneId="TCSYLVIO_001928"/>
        <gene id="3371" protId="K4EDE1" geneId="TCSYLVIO_000285"/>
        <gene id="3373" protId="K4DYA9" geneId="TCSYLVIO_005851"/>
        <gene id="3375" protId="K4E2U3" geneId="TCSYLVIO_003981"/>
        <gene id="3377" protId="K4DLZ1" geneId="TCSYLVIO_009923"/>
        <gene id="3379" protId="K4E0W9" geneId="TCSYLVIO_004666"/>
        <gene id="3381" protId="K4EDG6" geneId="TCSYLVIO_000395"/>
        <gene id="3383" protId="K4EBJ4" geneId="TCSYLVIO_001088"/>
        <gene id="3396" protId="K4DSQ5" geneId="TCSYLVIO_007595"/>
        <gene id="3397" protId="K4DKT1" geneId="TCSYLVIO_010326"/>
        <gene id="3402" protId="K4DM56" geneId="TCSYLVIO_009718"/>
        <gene id="3405" protId="K4DXE2" geneId="TCSYLVIO_006008"/>
        <gene id="3407" protId="K4DTH9" geneId="TCSYLVIO_007337"/>
        <gene id="3409" protId="K4E9Q0" geneId="TCSYLVIO_001951"/>
        <gene id="3428" protId="K4DY10" geneId="TCSYLVIO_006136"/>
        <gene id="3432" protId="K4DSN6" geneId="TCSYLVIO_007716"/>
        <gene id="3436" protId="K4EAR6" geneId="TCSYLVIO_001364"/>
        <gene id="3438" protId="K4DXW5" geneId="TCSYLVIO_005733"/>
        <gene id="3440" protId="K4E5P4" geneId="TCSYLVIO_002943"/>
        <gene id="3442" protId="K4DTE0" geneId="TCSYLVIO_007384"/>
        <gene id="3444" protId="K4E1M7" geneId="TCSYLVIO_004421"/>
        <gene id="3448" protId="K4E8N3" geneId="TCSYLVIO_001875"/>
        <gene id="3451" protId="K4E3V5" geneId="TCSYLVIO_003743"/>
        <gene id="3453" protId="K4DSQ7" geneId="TCSYLVIO_007606"/>
        <gene id="3455" protId="K4E8Q1" geneId="TCSYLVIO_002088"/>
        <gene id="3457" protId="K4E4V1" geneId="TCSYLVIO_003389"/>
        <gene id="3459" protId="K4DUV1" geneId="TCSYLVIO_006827"/>
        <gene id="3461" protId="K4EAS8" geneId="TCSYLVIO_001559"/>
        <gene id="3464" protId="K4E1S5" geneId="TCSYLVIO_004817"/>
        <gene id="3467" protId="K4E8I2" geneId="TCSYLVIO_002073"/>
        <gene id="3469" protId="K4DXS5" geneId="TCSYLVIO_005778"/>
        <gene id="3471" protId="K4E5Q6" geneId="TCSYLVIO_003073"/>
        <gene id="3473" protId="K4E638" geneId="TCSYLVIO_002819"/>
        <gene id="3475" protId="K4DY58" geneId="TCSYLVIO_005645"/>
        <gene id="3477" protId="K4E0X0" geneId="TCSYLVIO_004770"/>
        <gene id="3480" protId="K4DZC6" geneId="TCSYLVIO_005449"/>
        <gene id="3482" protId="K4DWI4" geneId="TCSYLVIO_006463"/>
        <gene id="3484" protId="K4EE03" geneId="TCSYLVIO_000382"/>
        <gene id="3486" protId="K4DY25" geneId="TCSYLVIO_006116"/>
        <gene id="3488" protId="K4E2G4" geneId="TCSYLVIO_004094"/>
        <gene id="3490" protId="K4E4Y7" geneId="TCSYLVIO_003199"/>
        <gene id="3495" protId="K4DW09" geneId="TCSYLVIO_006496"/>
        <gene id="3496" protId="K4E796" geneId="TCSYLVIO_002370"/>
        <gene id="3499" protId="K4EBD6" geneId="TCSYLVIO_001355"/>
        <gene id="3501" protId="K4DJD7" geneId="TCSYLVIO_010723"/>
        <gene id="3503" protId="K4E7K0" geneId="TCSYLVIO_002498"/>
        <gene id="3505" protId="K4E0K4" geneId="TCSYLVIO_004783"/>
        <gene id="3507" protId="K4DT06" geneId="TCSYLVIO_007510"/>
        <gene id="3525" protId="K4EBL8" geneId="TCSYLVIO_001057"/>
        <gene id="3528" protId="K4E3I4" geneId="TCSYLVIO_003728"/>
        <gene id="3529" protId="K4E924" geneId="TCSYLVIO_001803"/>
        <gene id="3530" protId="K4E2P4" geneId="TCSYLVIO_004054"/>
        <gene id="3534" protId="K4ECT2" geneId="TCSYLVIO_000834"/>
        <gene id="3536" protId="K4DLE8" geneId="TCSYLVIO_009980"/>
        <gene id="3538" protId="K4DU74" geneId="TCSYLVIO_007314"/>
        <gene id="3540" protId="K4DR99" geneId="TCSYLVIO_008244"/>
        <gene id="3542" protId="K4DUU2" geneId="TCSYLVIO_007062"/>
        <gene id="3544" protId="K4DUT5" geneId="TCSYLVIO_007289"/>
        <gene id="3546" protId="K4E0V4" geneId="TCSYLVIO_004677"/>
        <gene id="3548" protId="K4E8I3" geneId="TCSYLVIO_001926"/>
        <gene id="3552" protId="K4E0Z9" geneId="TCSYLVIO_004651"/>
        <gene id="3554" protId="K4E9R2" geneId="TCSYLVIO_001723"/>
        <gene id="3555" protId="K4E277" geneId="TCSYLVIO_004328"/>
        <gene id="3557" protId="K4E774" geneId="TCSYLVIO_002391"/>
        <gene id="3558" protId="K4E8H9" geneId="TCSYLVIO_002390"/>
        <gene id="3560" protId="K4DRA8" geneId="TCSYLVIO_008241"/>
        <gene id="3561" protId="K4DR51" geneId="TCSYLVIO_008242"/>
        <gene id="3564" protId="K4E9Z0" geneId="TCSYLVIO_001860"/>
        <gene id="3567" protId="K4DTG5" geneId="TCSYLVIO_007567"/>
        <gene id="3570" protId="K4EAN3" geneId="TCSYLVIO_001163"/>
        <gene id="3572" protId="K4DSZ6" geneId="TCSYLVIO_007601"/>
        <gene id="3574" protId="K4EAF6" geneId="TCSYLVIO_001248"/>
        <gene id="3577" protId="K4DNH9" geneId="TCSYLVIO_009375"/>
        <gene id="3580" protId="K4E5V2" geneId="TCSYLVIO_003388"/>
        <gene id="3583" protId="K4EB13" geneId="TCSYLVIO_001459"/>
        <gene id="3585" protId="K4E410" geneId="TCSYLVIO_003567"/>
        <gene id="3587" protId="K4EBK6" geneId="TCSYLVIO_001074"/>
        <gene id="3589" protId="K4DWJ0" geneId="TCSYLVIO_006461"/>
        <gene id="3610" protId="K4E816" geneId="TCSYLVIO_002143"/>
        <gene id="3611" protId="K4DKQ1" geneId="TCSYLVIO_010233"/>
        <gene id="3612" protId="K4E649" geneId="TCSYLVIO_002800"/>
        <gene id="3613" protId="K4DTS3" geneId="TCSYLVIO_007211"/>
        <gene id="3614" protId="K4EE26" geneId="TCSYLVIO_000356"/>
        <gene id="3615" protId="K4EBW5" geneId="TCSYLVIO_000863"/>
        <gene id="3616" protId="K4DVI4" geneId="TCSYLVIO_006581"/>
        <gene id="3617" protId="K4DS65" geneId="TCSYLVIO_007823"/>
        <gene id="3620" protId="K4DNP3" geneId="TCSYLVIO_009204"/>
        <gene id="3623" protId="K4EAT4" geneId="TCSYLVIO_001158"/>
        <gene id="3626" protId="K4DWF7" geneId="TCSYLVIO_006284"/>
        <gene id="3628" protId="K4DWA5" geneId="TCSYLVIO_006540"/>
        <gene id="3630" protId="K4E8G9" geneId="TCSYLVIO_002095"/>
        <gene id="3632" protId="K4E779" geneId="TCSYLVIO_002382"/>
        <gene id="3635" protId="K4DUA8" geneId="TCSYLVIO_007021"/>
        <gene id="3636" protId="K4DXQ0" geneId="TCSYLVIO_005907"/>
        <gene id="3638" protId="K4DUJ7" geneId="TCSYLVIO_007413"/>
        <gene id="3639" protId="K4DZB9" geneId="TCSYLVIO_005685"/>
        <gene id="3641" protId="K4DLZ0" geneId="TCSYLVIO_009815"/>
        <gene id="3643" protId="K4E5X6" geneId="TCSYLVIO_003115"/>
        <gene id="3647" protId="K4DZ57" geneId="TCSYLVIO_005288"/>
        <gene id="3648" protId="K4DWX4" geneId="TCSYLVIO_006080"/>
        <gene id="3649" protId="K4E0M3" geneId="TCSYLVIO_004762"/>
        <gene id="3652" protId="K4E6E0" geneId="TCSYLVIO_002944"/>
        <gene id="3655" protId="K4EA71" geneId="TCSYLVIO_001808"/>
        <gene id="3656" protId="K4E640" geneId="TCSYLVIO_003034"/>
        <gene id="3659" protId="K4DZ53" geneId="TCSYLVIO_005296"/>
        <gene id="3661" protId="K4DQ05" geneId="TCSYLVIO_008887"/>
        <gene id="3662" protId="K4DU71" geneId="TCSYLVIO_007080"/>
        <gene id="3665" protId="K4DNU0" geneId="TCSYLVIO_009259"/>
        <gene id="3671" protId="K4DM15" geneId="TCSYLVIO_009790"/>
        <gene id="3672" protId="K4E0J3" geneId="TCSYLVIO_004889"/>
        <gene id="3675" protId="K4E197" geneId="TCSYLVIO_004995"/>
        <gene id="3677" protId="K4E9Z8" geneId="TCSYLVIO_001547"/>
        <gene id="3689" protId="K4DZB2" geneId="TCSYLVIO_005255"/>
        <gene id="3690" protId="K4E6X1" geneId="TCSYLVIO_002799"/>
        <gene id="3691" protId="K4DN55" geneId="TCSYLVIO_009519"/>
        <gene id="3692" protId="K4EBI2" geneId="TCSYLVIO_000861"/>
        <gene id="3693" protId="K4DUM0" geneId="TCSYLVIO_007370"/>
        <gene id="3694" protId="K4DNP0" geneId="TCSYLVIO_009146"/>
        <gene id="3695" protId="K4E8Z1" geneId="TCSYLVIO_001794"/>
        <gene id="3696" protId="K4DMY7" geneId="TCSYLVIO_009487"/>
        <gene id="3697" protId="K4DXK7" geneId="TCSYLVIO_005899"/>
        <gene id="3698" protId="K4E8E1" geneId="TCSYLVIO_002118"/>
        <gene id="3699" protId="K4DP56" geneId="TCSYLVIO_009129"/>
        <gene id="3700" protId="K4DMY9" geneId="TCSYLVIO_009591"/>
        <gene id="3701" protId="K4EBA0" geneId="TCSYLVIO_001397"/>
        <gene id="3702" protId="K4DL89" geneId="TCSYLVIO_010048"/>
        <gene id="3703" protId="K4DVS1" geneId="TCSYLVIO_006522"/>
        <gene id="3704" protId="K4ECQ5" geneId="TCSYLVIO_000578"/>
        <gene id="3705" protId="K4DNL9" geneId="TCSYLVIO_009235"/>
        <gene id="3706" protId="K4ECC1" geneId="TCSYLVIO_000617"/>
        <gene id="3707" protId="K4DKL6" geneId="TCSYLVIO_010284"/>
        <gene id="3708" protId="K4DIJ9" geneId="TCSYLVIO_011043"/>
        <gene id="3709" protId="K4DLC7" geneId="TCSYLVIO_010119"/>
        <gene id="3710" protId="K4ECK0" geneId="TCSYLVIO_000494"/>
        <gene id="3711" protId="K4ED35" geneId="TCSYLVIO_000369"/>
        <gene id="3712" protId="K4ECD1" geneId="TCSYLVIO_000723"/>
        <gene id="3713" protId="K4EE12" geneId="TCSYLVIO_000101"/>
        <gene id="3714" protId="K4EDN9" geneId="TCSYLVIO_000267"/>
        <gene id="3717" protId="K4DY96" geneId="TCSYLVIO_005702"/>
        <gene id="3720" protId="K4E3V6" geneId="TCSYLVIO_004075"/>
        <gene id="3722" protId="K4E8W2" geneId="TCSYLVIO_002273"/>
        <gene id="3723" protId="K4E7Q5" geneId="TCSYLVIO_002274"/>
        <gene id="3725" protId="K4E2Q3" geneId="TCSYLVIO_004045"/>
        <gene id="3726" protId="K4E761" geneId="TCSYLVIO_002553"/>
        <gene id="3728" protId="K4E0H6" geneId="TCSYLVIO_005027"/>
        <gene id="3731" protId="K4DKB2" geneId="TCSYLVIO_010363"/>
        <gene id="3732" protId="K4E381" geneId="TCSYLVIO_003937"/>
        <gene id="3733" protId="K4DU29" geneId="TCSYLVIO_007207"/>
        <gene id="3737" protId="K4DIR1" geneId="TCSYLVIO_010959"/>
        <gene id="3741" protId="K4E6Z2" geneId="TCSYLVIO_002956"/>
        <gene id="3744" protId="K4DU00" geneId="TCSYLVIO_007148"/>
        <gene id="3747" protId="K4DY07" geneId="TCSYLVIO_005818"/>
        <gene id="3749" protId="K4DK49" geneId="TCSYLVIO_010489"/>
        <gene id="3751" protId="K4DN18" geneId="TCSYLVIO_009372"/>
        <gene id="3753" protId="K4E3P9" geneId="TCSYLVIO_003691"/>
        <gene id="3755" protId="K4E8N0" geneId="TCSYLVIO_002345"/>
        <gene id="3757" protId="K4E2X4" geneId="TCSYLVIO_004199"/>
        <gene id="3759" protId="K4E9Q2" geneId="TCSYLVIO_001644"/>
        <gene id="3760" protId="K4E2V5" geneId="TCSYLVIO_004439"/>
        <gene id="3762" protId="K4E6Y2" geneId="TCSYLVIO_002785"/>
        <gene id="3764" protId="K4E959" geneId="TCSYLVIO_001922"/>
        <gene id="3766" protId="K4E940" geneId="TCSYLVIO_001732"/>
        <gene id="3768" protId="K4DJI6" geneId="TCSYLVIO_010670"/>
        <gene id="3770" protId="K4DTP4" geneId="TCSYLVIO_007498"/>
        <gene id="3772" protId="K4DPI3" geneId="TCSYLVIO_008925"/>
        <gene id="3773" protId="K4DPS8" geneId="TCSYLVIO_008924"/>
        <gene id="3774" protId="K4DPX4" geneId="TCSYLVIO_008926"/>
        <gene id="3777" protId="K4E148" geneId="TCSYLVIO_004598"/>
        <gene id="3779" protId="K4E1I2" geneId="TCSYLVIO_004544"/>
        <gene id="3781" protId="K4EAS5" geneId="TCSYLVIO_001115"/>
        <gene id="3782" protId="K4DQS6" geneId="TCSYLVIO_008471"/>
        <gene id="3785" protId="K4E1B3" geneId="TCSYLVIO_004977"/>
        <gene id="3787" protId="K4EAN1" geneId="TCSYLVIO_001402"/>
        <gene id="3788" protId="K4E9Z6" geneId="TCSYLVIO_001401"/>
        <gene id="3790" protId="K4DVU6" geneId="TCSYLVIO_006502"/>
        <gene id="3792" protId="K4DXR4" geneId="TCSYLVIO_005831"/>
        <gene id="3795" protId="K4E0W3" geneId="TCSYLVIO_004695"/>
        <gene id="3797" protId="K4EDV4" geneId="TCSYLVIO_000176"/>
        <gene id="3799" protId="K4DX01" geneId="TCSYLVIO_006086"/>
        <gene id="3801" protId="K4E5B9" geneId="TCSYLVIO_003549"/>
        <gene id="3807" protId="K4DQT8" geneId="TCSYLVIO_008413"/>
        <gene id="3808" protId="K4DQX8" geneId="TCSYLVIO_008414"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="T.cruzi" link="http://www.uniprot.org/taxonomy/5693"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="2307"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="1832"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="1320"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="0.898"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="1273"/>
      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="1241"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1196"/>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
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