<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="538" inparalogs="1895"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Perkinsus marinus " NCBITaxId="423536">
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    <notes>
      <additionalInformation abbreviation="P.marinus" link="http://www.uniprot.org/taxonomy/423536"/>
    </notes>
  </species>
  <species name="Rhodotorula glutinis" NCBITaxId="1001064">
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    <notes>
      <additionalInformation abbreviation="R.glutinis" link="http://www.uniprot.org/taxonomy/1001064"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.981"/>
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      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="1467"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.748"/>
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