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    <notes>
      <additionalInformation abbreviation="P.jiroveci" link="http://www.uniprot.org/taxonomy/1209962"/>
    </notes>
  </species>
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        <gene id="2986" protId="G8ZZM2" geneId="TDEL0H02070"/>
        <gene id="2988" protId="G8ZM95" geneId="TDEL0A04070"/>
        <gene id="2990" protId="G8ZTH7" geneId="TDEL0D03370"/>
        <gene id="2992" protId="G8ZUN2" geneId="TDEL0E00830"/>
        <gene id="2994" protId="G8ZPR9" geneId="TDEL0B04840"/>
        <gene id="2996" protId="G8ZUG0" geneId="TDEL0E00110"/>
        <gene id="2998" protId="G8ZPX6" geneId="TDEL0B05410"/>
        <gene id="3000" protId="G8ZRS4" geneId="TDEL0C03270"/>
        <gene id="3002" protId="G8ZTA9" geneId="TDEL0D02690"/>
        <gene id="3004" protId="G8ZXT6" geneId="TDEL0G03360"/>
        <gene id="3006" protId="G8ZVD5" geneId="TDEL0E03360"/>
        <gene id="3008" protId="G8ZYR5" geneId="TDEL0G01730"/>
        <gene id="3011" protId="G8ZZM8" geneId="TDEL0H02130"/>
        <gene id="3013" protId="G8ZMI4" geneId="TDEL0A04960"/>
        <gene id="3015" protId="G8ZNI2" geneId="TDEL0B00470"/>
        <gene id="3017" protId="G8ZVI3" geneId="TDEL0E03840"/>
        <gene id="3019" protId="G8ZWA6" geneId="TDEL0F00890"/>
        <gene id="3021" protId="G8ZM56" geneId="TDEL0A03680"/>
        <gene id="3023" protId="G8ZP16" geneId="TDEL0B02310"/>
        <gene id="3025" protId="G8ZQQ2" geneId="TDEL0C06500"/>
        <gene id="3027" protId="G8ZS26" geneId="TDEL0C04290"/>
        <gene id="3029" protId="G8ZV37" geneId="TDEL0E02380"/>
        <gene id="3031" protId="G8ZT43" geneId="TDEL0D02030"/>
        <gene id="3034" protId="G8ZNZ0" geneId="TDEL0B02050"/>
        <gene id="3036" protId="G8ZP86" geneId="TDEL0B03010"/>
        <gene id="3038" protId="G8ZNH7" geneId="TDEL0B00420"/>
        <gene id="3040" protId="G8ZQX6" geneId="TDEL0C00290"/>
        <gene id="3042" protId="G8ZST9" geneId="TDEL0D00990"/>
        <gene id="3044" protId="G8ZU16" geneId="TDEL0D05260"/>
        <gene id="3046" protId="G8ZUR7" geneId="TDEL0E01180"/>
        <gene id="3048" protId="G8ZS00" geneId="TDEL0C04030"/>
        <gene id="3050" protId="G8ZYW3" geneId="TDEL0G02210"/>
        <gene id="3052" protId="G9A037" geneId="TDEL0H03720"/>
        <gene id="3055" protId="G8ZN75" geneId="TDEL0A07370"/>
        <gene id="3057" protId="G8ZL85" geneId="TDEL0A00470"/>
        <gene id="3059" protId="G8ZTG8" geneId="TDEL0D03280"/>
        <gene id="3061" protId="G8ZMX2" geneId="TDEL0A06340"/>
        <gene id="3063" protId="G8ZLI4" geneId="TDEL0A01460"/>
        <gene id="3065" protId="G8ZRT3" geneId="TDEL0C03360"/>
        <gene id="3067" protId="G8ZR30" geneId="TDEL0C00830"/>
        <gene id="3069" protId="G8ZR37" geneId="TDEL0C00900"/>
        <gene id="3071" protId="G8ZUQ6" geneId="TDEL0E01070"/>
        <gene id="3073" protId="G8ZTJ1" geneId="TDEL0D03510"/>
        <gene id="3075" protId="G8ZT76" geneId="TDEL0D02360"/>
        <gene id="3077" protId="G8ZRU6" geneId="TDEL0C03490"/>
        <gene id="3079" protId="G8ZRA0" geneId="TDEL0C01530"/>
        <gene id="3081" protId="G8ZR55" geneId="TDEL0C01080"/>
        <gene id="3083" protId="G8ZPL1" geneId="TDEL0B04260"/>
        <gene id="3085" protId="G8ZQ90" geneId="TDEL0B06550"/>
        <gene id="3087" protId="G8ZTC9" geneId="TDEL0D02890"/>
        <gene id="3089" protId="G8ZYZ8" geneId="TDEL0G02560"/>
        <gene id="3091" protId="G8ZW23" geneId="TDEL0E05740"/>
        <gene id="3092" protId="G8ZQR6" geneId="TDEL0C06640"/>
        <gene id="3094" protId="G8ZTQ0" geneId="TDEL0D04100"/>
        <gene id="3096" protId="G8ZMI1" geneId="TDEL0A04930"/>
        <gene id="3098" protId="G8ZQ02" geneId="TDEL0B05670"/>
        <gene id="3100" protId="G8ZRR3" geneId="TDEL0C03160"/>
        <gene id="3102" protId="G8ZQK8" geneId="TDEL0C06060"/>
        <gene id="3104" protId="G8ZRM8" geneId="TDEL0C02810"/>
        <gene id="3106" protId="G8ZTQ2" geneId="TDEL0D04120"/>
        <gene id="3108" protId="G8ZYZ5" geneId="TDEL0G02530"/>
        <gene id="3109" protId="G8ZSV2" geneId="TDEL0D01120"/>
        <gene id="3111" protId="G8ZR31" geneId="TDEL0C00840"/>
        <gene id="3113" protId="G8ZT58" geneId="TDEL0D02180"/>
        <gene id="3115" protId="G8ZZW7" geneId="TDEL0H03020"/>
        <gene id="3117" protId="G8ZZH2" geneId="TDEL0H01570"/>
        <gene id="3119" protId="G8ZZX4" geneId="TDEL0H03090"/>
        <gene id="3121" protId="G8ZZX3" geneId="TDEL0H03080"/>
        <gene id="3124" protId="G8ZX62" geneId="TDEL0F03950"/>
        <gene id="3126" protId="G8ZN16" geneId="TDEL0A06780"/>
        <gene id="3128" protId="G8ZQ72" geneId="TDEL0B06370"/>
        <gene id="3130" protId="G8ZW85" geneId="TDEL0F00680"/>
        <gene id="3132" protId="G8ZLZ6" geneId="TDEL0A03080"/>
        <gene id="3134" protId="G8ZRU8" geneId="TDEL0C03510"/>
        <gene id="3136" protId="G8ZNT6" geneId="TDEL0B01510"/>
        <gene id="3138" protId="G8ZPF1" geneId="TDEL0B03660"/>
        <gene id="3140" protId="G8ZPQ2" geneId="TDEL0B04670"/>
        <gene id="3142" protId="G8ZLG3" geneId="TDEL0A01250"/>
        <gene id="3144" protId="G8ZN96" geneId="TDEL0A07580"/>
        <gene id="3147" protId="G8ZPD6" geneId="TDEL0B03510"/>
        <gene id="3149" protId="G8ZQY1" geneId="TDEL0C00340"/>
        <gene id="3151" protId="G8ZP80" geneId="TDEL0B02950"/>
        <gene id="3153" protId="G8ZSX9" geneId="TDEL0D01390"/>
        <gene id="3155" protId="G8ZTX2" geneId="TDEL0D04820"/>
        <gene id="3157" protId="G8ZWD8" geneId="TDEL0F01210"/>
        <gene id="3159" protId="G8ZYG0" geneId="TDEL0G00680"/>
        <gene id="3161" protId="G8ZWC5" geneId="TDEL0F01080"/>
        <gene id="3163" protId="G8ZRJ8" geneId="TDEL0C02510"/>
        <gene id="3165" protId="G8ZYT9" geneId="TDEL0G01970"/>
        <gene id="3168" protId="G8ZQR0" geneId="TDEL0C06580"/>
        <gene id="3170" protId="G8ZVE7" geneId="TDEL0E03480"/>
        <gene id="3172" protId="G8ZR88" geneId="TDEL0C01410"/>
        <gene id="3174" protId="G8ZPE6" geneId="TDEL0B03610"/>
        <gene id="3176" protId="G8ZTE9" geneId="TDEL0D03090"/>
        <gene id="3178" protId="G8ZQG7" geneId="TDEL0B07320"/>
        <gene id="3180" protId="G8ZSE4" geneId="TDEL0C05470"/>
        <gene id="3182" protId="G8ZS75" geneId="TDEL0C04780"/>
        <gene id="3184" protId="G8ZWY9" geneId="TDEL0F03220"/>
        <gene id="3187" protId="G8ZNC1" geneId="TDEL0A07830"/>
        <gene id="3189" protId="G8ZLK8" geneId="TDEL0A01700"/>
        <gene id="3191" protId="G8ZQH4" geneId="TDEL0B07390"/>
        <gene id="3193" protId="G8ZSD8" geneId="TDEL0C05410"/>
        <gene id="3195" protId="G8ZQA9" geneId="TDEL0B06740"/>
        <gene id="3197" protId="G8ZN68" geneId="TDEL0A07300"/>
        <gene id="3199" protId="G8ZVU2" geneId="TDEL0E04930"/>
        <gene id="3201" protId="G8ZXZ4" geneId="TDEL0G03940"/>
        <gene id="3203" protId="G8ZVI5" geneId="TDEL0E03860"/>
        <gene id="3205" protId="G8ZQZ1" geneId="TDEL0C00440"/>
        <gene id="3207" protId="G8ZN22" geneId="TDEL0A06840"/>
        <gene id="3209" protId="G8ZZT3" geneId="TDEL0H02680"/>
        <gene id="3211" protId="G8ZMM0" geneId="TDEL0A05320"/>
        <gene id="3213" protId="G8ZN67" geneId="TDEL0A07290"/>
        <gene id="3215" protId="G8ZRS1" geneId="TDEL0C03240"/>
        <gene id="3217" protId="G8ZQB5" geneId="TDEL0B06800"/>
        <gene id="3219" protId="G8ZW16" geneId="TDEL0E05670"/>
        <gene id="3221" protId="G8ZMS9" geneId="TDEL0A05910"/>
        <gene id="3223" protId="G8ZLQ7" geneId="TDEL0A02190"/>
        <gene id="3225" protId="G8ZTX3" geneId="TDEL0D04830"/>
        <gene id="3227" protId="G8ZRZ8" geneId="TDEL0C04010"/>
        <gene id="3229" protId="G8ZPA3" geneId="TDEL0B03180"/>
        <gene id="3231" protId="G8ZLX2" geneId="TDEL0A02840"/>
        <gene id="3233" protId="G8ZM50" geneId="TDEL0A03620"/>
        <gene id="3235" protId="G8ZWF4" geneId="TDEL0F01370"/>
        <gene id="3237" protId="G8ZQ48" geneId="TDEL0B06130"/>
        <gene id="3239" protId="G8ZSH1" geneId="TDEL0C05740"/>
        <gene id="3241" protId="G8ZWK1" geneId="TDEL0F01840"/>
        <gene id="3243" protId="G8ZXE9" geneId="TDEL0F04820"/>
        <gene id="3245" protId="G8ZTX9" geneId="TDEL0D04890"/>
        <gene id="3247" protId="G8ZQ40" geneId="TDEL0B06050"/>
        <gene id="3249" protId="G8ZRE3" geneId="TDEL0C01960"/>
        <gene id="3251" protId="G8ZWE0" geneId="TDEL0F01230"/>
        <gene id="3253" protId="G8ZWF2" geneId="TDEL0F01350"/>
        <gene id="3255" protId="G8ZL67" geneId="TDEL0A00290"/>
        <gene id="3257" protId="G8ZQH7" geneId="TDEL0B07420"/>
        <gene id="3259" protId="G8ZS72" geneId="TDEL0C04750"/>
        <gene id="3261" protId="G8ZVR9" geneId="TDEL0E04700"/>
        <gene id="3263" protId="G8ZWH8" geneId="TDEL0F01610"/>
        <gene id="3265" protId="G8ZU83" geneId="TDEL0D05930"/>
        <gene id="3267" protId="G8ZS70" geneId="TDEL0C04730"/>
        <gene id="3269" protId="G8ZX70" geneId="TDEL0F04030"/>
        <gene id="3271" protId="G8ZV33" geneId="TDEL0E02340"/>
        <gene id="3273" protId="G8ZZ47" geneId="TDEL0H00320"/>
        <gene id="3275" protId="G8ZMW9" geneId="TDEL0A06310"/>
        <gene id="3277" protId="G8ZNX2" geneId="TDEL0B01870"/>
        <gene id="3279" protId="G8ZX29" geneId="TDEL0F03620"/>
        <gene id="3281" protId="G8ZZS0" geneId="TDEL0H02550"/>
        <gene id="3283" protId="G8ZYN2" geneId="TDEL0G01400"/>
        <gene id="3285" protId="G8ZMY0" geneId="TDEL0A06420"/>
        <gene id="3287" protId="G8ZT27" geneId="TDEL0D01870"/>
        <gene id="3289" protId="G8ZPS9" geneId="TDEL0B04940"/>
        <gene id="3291" protId="G8ZPT9" geneId="TDEL0B05040"/>
        <gene id="3293" protId="G8ZT22" geneId="TDEL0D01820"/>
        <gene id="3295" protId="G8ZT24" geneId="TDEL0D01840"/>
        <gene id="3297" protId="G8ZRN6" geneId="TDEL0C02890"/>
        <gene id="3299" protId="G8ZWD4" geneId="TDEL0F01170"/>
        <gene id="3301" protId="G8ZWT3" geneId="TDEL0F02660"/>
        <gene id="3304" protId="G8ZL69" geneId="TDEL0A00310"/>
        <gene id="3307" protId="G8ZY29" geneId="TDEL0G04290"/>
        <gene id="3309" protId="G8ZU88" geneId="TDEL0D05980"/>
        <gene id="3311" protId="G8ZLI1" geneId="TDEL0A01430"/>
        <gene id="3313" protId="G8ZPQ8" geneId="TDEL0B04730"/>
        <gene id="3315" protId="G8ZZ62" geneId="TDEL0H00470"/>
        <gene id="3317" protId="G8ZZF8" geneId="TDEL0H01430"/>
        <gene id="3319" protId="G8ZT11" geneId="TDEL0D01710"/>
        <gene id="3321" protId="G8ZVG2" geneId="TDEL0E03630"/>
        <gene id="3323" protId="G8ZXG3" geneId="TDEL0F04960"/>
        <gene id="3325" protId="G8ZXN9" geneId="TDEL0G02890"/>
        <gene id="3327" protId="G8ZRU9" geneId="TDEL0C03520"/>
        <gene id="3329" protId="G8ZWJ0" geneId="TDEL0F01730"/>
        <gene id="3331" protId="G8ZU31" geneId="TDEL0D05410"/>
        <gene id="3333" protId="G8ZZ78" geneId="TDEL0H00630"/>
        <gene id="3335" protId="G8ZW62" geneId="TDEL0F00450"/>
        <gene id="3337" protId="G9A017" geneId="TDEL0H03520"/>
        <gene id="3340" protId="G8ZMD7" geneId="TDEL0A04490"/>
        <gene id="3342" protId="G8ZXP9" geneId="TDEL0G02990"/>
        <gene id="3344" protId="G8ZZP1" geneId="TDEL0H02260"/>
        <gene id="3347" protId="G8ZUC4" geneId="TDEL0D06340"/>
        <gene id="3349" protId="G8ZPW7" geneId="TDEL0B05320"/>
        <gene id="3351" protId="G8ZP62" geneId="TDEL0B02770"/>
        <gene id="3353" protId="G8ZXD0" geneId="TDEL0F04630"/>
        <gene id="3355" protId="G9A057" geneId="TDEL0H03920"/>
        <gene id="3357" protId="G8ZMD4" geneId="TDEL0A04460"/>
        <gene id="3359" protId="G8ZRQ8" geneId="TDEL0C03110"/>
        <gene id="3361" protId="G8ZVL6" geneId="TDEL0E04170"/>
        <gene id="3363" protId="G8ZS85" geneId="TDEL0C04880"/>
        <gene id="3365" protId="G8ZZ61" geneId="TDEL0H00460"/>
        <gene id="3367" protId="G8ZZC9" geneId="TDEL0H01140"/>
        <gene id="3369" protId="G8ZM00" geneId="TDEL0A03120"/>
        <gene id="3371" protId="G8ZNF5" geneId="TDEL0B00200"/>
        <gene id="3373" protId="G8ZNT7" geneId="TDEL0B01520"/>
        <gene id="3375" protId="G8ZV72" geneId="TDEL0E02730"/>
        <gene id="3377" protId="G8ZVC2" geneId="TDEL0E03230"/>
        <gene id="3379" protId="G8ZT54" geneId="TDEL0D02140"/>
        <gene id="3381" protId="G8ZYC7" geneId="TDEL0G00350"/>
        <gene id="3383" protId="G8ZV01" geneId="TDEL0E02020"/>
        <gene id="3385" protId="G8ZZJ6" geneId="TDEL0H01810"/>
        <gene id="3387" protId="G8ZXS8" geneId="TDEL0G03280"/>
        <gene id="3389" protId="G8ZPK3" geneId="TDEL0B04180"/>
        <gene id="3391" protId="G8ZQR2" geneId="TDEL0C06600"/>
        <gene id="3393" protId="G8ZNN8" geneId="TDEL0B01030"/>
        <gene id="3395" protId="G8ZXD6" geneId="TDEL0F04690"/>
        <gene id="3397" protId="G8ZS96" geneId="TDEL0C04990"/>
        <gene id="3399" protId="G9A092" geneId="TDEL0H04270"/>
        <gene id="3401" protId="G8ZZ39" geneId="TDEL0H00240"/>
        <gene id="3403" protId="G8ZTE2" geneId="TDEL0D03020"/>
        <gene id="3405" protId="G8ZSA5" geneId="TDEL0C05080"/>
        <gene id="3407" protId="G8ZN73" geneId="TDEL0A07350"/>
        <gene id="3409" protId="G8ZT81" geneId="TDEL0D02410"/>
        <gene id="3411" protId="G8ZZ14" geneId="TDEL0G02720"/>
        <gene id="3413" protId="G8ZN92" geneId="TDEL0A07540"/>
        <gene id="3415" protId="G8ZNH3" geneId="TDEL0B00380"/>
        <gene id="3417" protId="G8ZXY2" geneId="TDEL0G03820"/>
        <gene id="3420" protId="G8ZP22" geneId="TDEL0B02370"/>
        <gene id="3422" protId="G8ZRB2" geneId="TDEL0C01650"/>
        <gene id="3424" protId="G8ZQP5" geneId="TDEL0C06430"/>
        <gene id="3426" protId="G8ZTM6" geneId="TDEL0D03860"/>
        <gene id="3428" protId="G8ZM57" geneId="TDEL0A03690"/>
        <gene id="3430" protId="G9A007" geneId="TDEL0H03420"/>
        <gene id="3432" protId="G8ZP70" geneId="TDEL0B02850"/>
        <gene id="3434" protId="G8ZVN9" geneId="TDEL0E04400"/>
        <gene id="3436" protId="G8ZPS5" geneId="TDEL0B04900"/>
        <gene id="3438" protId="G9A098" geneId="TDEL0H04330"/>
        <gene id="3440" protId="G8ZMY9" geneId="TDEL0A06510"/>
        <gene id="3442" protId="G8ZND1" geneId="TDEL0A07930"/>
        <gene id="3444" protId="G8ZM10" geneId="TDEL0A03220"/>
        <gene id="3446" protId="G8ZQQ8" geneId="TDEL0C06560"/>
        <gene id="3448" protId="G8ZZQ0" geneId="TDEL0H02350"/>
        <gene id="3450" protId="G8ZPN9" geneId="TDEL0B04540"/>
        <gene id="3452" protId="G8ZWN7" geneId="TDEL0F02200"/>
        <gene id="3454" protId="G8ZVE6" geneId="TDEL0E03470"/>
        <gene id="3456" protId="G8ZX69" geneId="TDEL0F04020"/>
        <gene id="3458" protId="G8ZNS8" geneId="TDEL0B01430"/>
        <gene id="3460" protId="G8ZN10" geneId="TDEL0A06720"/>
        <gene id="3462" protId="G8ZTX0" geneId="TDEL0D04800"/>
        <gene id="3464" protId="G8ZQV2" geneId="TDEL0C07000"/>
        <gene id="3466" protId="G8ZW99" geneId="TDEL0F00820"/>
        <gene id="3469" protId="G8ZU25" geneId="TDEL0D05350"/>
        <gene id="3471" protId="G8ZR62" geneId="TDEL0C01150"/>
        <gene id="3473" protId="G8ZLJ0" geneId="TDEL0A01520"/>
        <gene id="3475" protId="G8ZMG8" geneId="TDEL0A04800"/>
        <gene id="3477" protId="G8ZPU8" geneId="TDEL0B05130"/>
        <gene id="3479" protId="G8ZRR6" geneId="TDEL0C03190"/>
        <gene id="3481" protId="G8ZV85" geneId="TDEL0E02860"/>
        <gene id="3483" protId="G8ZWT5" geneId="TDEL0F02680"/>
        <gene id="3485" protId="G8ZUP0" geneId="TDEL0E00910"/>
        <gene id="3487" protId="G8ZVK0" geneId="TDEL0E04010"/>
        <gene id="3489" protId="G8ZMZ7" geneId="TDEL0A06590"/>
        <gene id="3491" protId="G8ZTW8" geneId="TDEL0D04780"/>
        <gene id="3493" protId="G8ZXQ5" geneId="TDEL0G03050"/>
        <gene id="3495" protId="G8ZZE4" geneId="TDEL0H01290"/>
        <gene id="3497" protId="G8ZXX9" geneId="TDEL0G03790"/>
        <gene id="3499" protId="G8ZMC7" geneId="TDEL0A04390"/>
        <gene id="3501" protId="G8ZM63" geneId="TDEL0A03750"/>
        <gene id="3503" protId="G8ZQF4" geneId="TDEL0B07190"/>
        <gene id="3505" protId="G8ZVM1" geneId="TDEL0E04220"/>
        <gene id="3507" protId="G8ZYB8" geneId="TDEL0G00260"/>
        <gene id="3510" protId="G8ZR15" geneId="TDEL0C00680"/>
        <gene id="3512" protId="G8ZPE4" geneId="TDEL0B03590"/>
        <gene id="3514" protId="G8ZMJ3" geneId="TDEL0A05050"/>
        <gene id="3516" protId="G8ZSM1" geneId="TDEL0D00310"/>
        <gene id="3518" protId="G8ZWW2" geneId="TDEL0F02950"/>
        <gene id="3520" protId="G8ZU56" geneId="TDEL0D05660"/>
        <gene id="3522" protId="G8ZZU5" geneId="TDEL0H02800"/>
        <gene id="3524" protId="G8ZW92" geneId="TDEL0F00750"/>
        <gene id="3526" protId="G8ZTE6" geneId="TDEL0D03060"/>
        <gene id="3528" protId="G8ZRS7" geneId="TDEL0C03300"/>
        <gene id="3530" protId="G8ZLQ5" geneId="TDEL0A02170"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="T.delbrueckii" link="http://www.uniprot.org/taxonomy/1076872"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="2901"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="2560"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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