<?xml version="1.0" encoding="utf-8"?>
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  </notes>
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    <notes>
      <additionalInformation abbreviation="P.alecto" link="http://www.uniprot.org/taxonomy/9402"/>
    </notes>
  </species>
  <species name="Thermodesulfovibrio yellowstonii " NCBITaxId="289376">
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        <gene id="743" protId="B5YJL6" geneId="THEYE_A0588"/>
        <gene id="744" protId="B5YJC2" geneId="THEYE_A0492"/>
        <gene id="746" protId="B5YJL0" geneId="rimI"/>
        <gene id="748" protId="B5YK94" geneId="rpsP"/>
        <gene id="750" protId="B5YG40" geneId="rplP"/>
        <gene id="752" protId="B5YFY8" geneId="rph"/>
        <gene id="754" protId="B5YKK5" geneId="THEYE_A0934"/>
        <gene id="755" protId="B5YKU7" geneId="THEYE_A1034"/>
        <gene id="758" protId="B5YG07" geneId="THEYE_A1404"/>
        <gene id="760" protId="B5YG41" geneId="rpsC"/>
        <gene id="762" protId="B5YJJ7" geneId="THEYE_A0569"/>
        <gene id="764" protId="B5YIE2" geneId="THEYE_A1984"/>
        <gene id="769" protId="B5YG33" geneId="rpsH"/>
        <gene id="772" protId="B5YI07" geneId="THEYE_A0224"/>
        <gene id="774" protId="B5YKS8" geneId="THEYE_A1014"/>
        <gene id="805" protId="B5YKZ7" geneId="cas3_1"/>
        <gene id="806" protId="B5YIV2" geneId="cas3_2"/>
        <gene id="809" protId="B5YG43" geneId="rpsS"/>
        <gene id="811" protId="B5YIM4" geneId="rplI"/>
        <gene id="815" protId="B5YHQ6" geneId="THEYE_A1852"/>
        <gene id="816" protId="B5YJH0" geneId="pyrK"/>
        <gene id="818" protId="B5YG42" geneId="rplV"/>
        <gene id="820" protId="B5YG38" geneId="rpsQ"/>
        <gene id="824" protId="B5YJG1" geneId="recA"/>
        <gene id="826" protId="B5YGK9" geneId="THEYE_A1612"/>
        <gene id="827" protId="B5YIH1" geneId="THEYE_A0282"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.yellowstonii" link="http://www.uniprot.org/taxonomy/289376"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="753"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="0.307"/>
      </geneRef>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
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