<?xml version="1.0" encoding="utf-8"?>
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  <notes>
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    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="P.alecto" link="http://www.uniprot.org/taxonomy/9402"/>
    </notes>
  </species>
  <species name="Rhodopirellula baltica " NCBITaxId="243090">
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        <gene id="989" protId="Q7UIC6" geneId="rpsK"/>
        <gene id="991" protId="Q7UM40" geneId="ALR1602"/>
        <gene id="1004" protId="Q7USW3" geneId="RB4267"/>
        <gene id="1007" protId="Q7UQR7" geneId="tas"/>
        <gene id="1010" protId="Q7UN31" geneId="rpsG"/>
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        <gene id="1016" protId="Q7USY7" geneId="dinB"/>
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        <gene id="1047" protId="Q7UHZ6" geneId="fmt"/>
        <gene id="1050" protId="Q7UM44" geneId="RB9080"/>
        <gene id="1052" protId="Q7UFZ7" geneId="hemH"/>
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        <gene id="1062" protId="Q7UNW8" geneId="rimK"/>
        <gene id="1064" protId="Q7USJ1" geneId="RB4467"/>
        <gene id="1066" protId="Q7UV78" geneId="ugpQ"/>
        <gene id="1069" protId="Q7UXK8" geneId="RB1263"/>
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        <gene id="1123" protId="Q7UTZ8" geneId="kel"/>
        <gene id="1125" protId="Q7UK80" geneId="RB10805"/>
        <gene id="1127" protId="Q7UFB6" geneId="atpG"/>
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        <gene id="1149" protId="Q7UUK6" geneId="fkpA"/>
        <gene id="1152" protId="Q7UL31" geneId="RB9771"/>
        <gene id="1155" protId="Q7UNT7" geneId="sprE"/>
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        <gene id="1180" protId="Q7UTH0" geneId="frr"/>
        <gene id="1183" protId="Q7UR86" geneId="RB5824"/>
        <gene id="1185" protId="Q7UP94" geneId="RB7087"/>
        <gene id="1187" protId="Q7UEU2" geneId="sdhB"/>
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        <gene id="1191" protId="Q7UP77" geneId="pheT"/>
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        <gene id="1198" protId="Q7UES7" geneId="RB10583"/>
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        <gene id="1213" protId="Q7UU01" geneId="nifU"/>
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        <gene id="1231" protId="Q7UYY2" geneId="acpP"/>
        <gene id="1233" protId="Q7UNJ5" geneId="RB7548"/>
        <gene id="1238" protId="Q7UVK3" geneId="eutE"/>
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        <gene id="1242" protId="Q7UFB8" geneId="atpH"/>
        <gene id="1244" protId="Q7UF31" geneId="trxA"/>
        <gene id="1246" protId="Q7UIR4" geneId="rsmA"/>
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        <gene id="1253" protId="Q7UH13" geneId="RB4904"/>
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        <gene id="1263" protId="Q7UTG5" geneId="inlE"/>
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        <gene id="1280" protId="Q7UUL0" geneId="RB3234"/>
        <gene id="1281" protId="Q7UI62" geneId="gnl"/>
        <gene id="1283" protId="Q7UZ77" geneId="RB136"/>
        <gene id="1285" protId="Q7UK72" geneId="RB10820"/>
        <gene id="1290" protId="Q7UUK3" geneId="RB3245"/>
        <gene id="1291" protId="Q7UFS9" geneId="Pph1"/>
        <gene id="1294" protId="Q7UGS7" geneId="RB5042"/>
        <gene id="1297" protId="Q7UEP2" geneId="kptA"/>
        <gene id="1299" protId="Q7UG85" geneId="spoU"/>
        <gene id="1301" protId="Q7UYT0" geneId="pgi"/>
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        <gene id="1304" protId="Q7UQI5" geneId="RB6305"/>
        <gene id="1305" protId="Q7UYZ8" geneId="RB289"/>
        <gene id="1307" protId="Q7UMR9" geneId="ykuE"/>
        <gene id="1309" protId="Q7UF87" geneId="crtI"/>
        <gene id="1310" protId="Q7UJE6" geneId="RB11943"/>
        <gene id="1312" protId="Q7UF01" geneId="RB10436"/>
        <gene id="1314" protId="Q7UFM3" geneId="parvA"/>
        <gene id="1316" protId="Q7UN14" geneId="rpsC"/>
        <gene id="1318" protId="Q7UKV4" geneId="rplI"/>
        <gene id="1323" protId="Q7UZ40" geneId="RB203"/>
        <gene id="1325" protId="Q7UMV9" geneId="RB7947"/>
        <gene id="1327" protId="Q7UTC8" geneId="RB3959"/>
        <gene id="1329" protId="Q7UXE5" geneId="dys1"/>
        <gene id="1331" protId="Q7UEY4" geneId="rpsI"/>
        <gene id="1335" protId="Q7UXJ9" geneId="RB1279"/>
        <gene id="1338" protId="Q7UL00" geneId="RB9832"/>
        <gene id="1340" protId="Q7UUY9" geneId="RB2978"/>
        <gene id="1342" protId="Q7US06" geneId="nasE"/>
        <gene id="1345" protId="Q7UED7" geneId="RB11397"/>
        <gene id="1346" protId="Q7UHG3" geneId="RB13222"/>
        <gene id="1348" protId="Q7UFI7" geneId="pfpI"/>
        <gene id="1349" protId="Q7USN8" geneId="RB4394"/>
        <gene id="1350" protId="Q7UKW3" geneId="RB9898"/>
        <gene id="1353" protId="Q7UHT1" geneId="RB13002"/>
        <gene id="1355" protId="Q7UJG0" geneId="RB11923"/>
        <gene id="1358" protId="Q7UFN6" geneId="nadD"/>
        <gene id="1362" protId="Q7UJJ0" geneId="recA"/>
        <gene id="1365" protId="Q7UTT6" geneId="RB3689"/>
        <gene id="1367" protId="Q7URH0" geneId="moeB"/>
        <gene id="1369" protId="Q7UN22" geneId="rpsJ"/>
        <gene id="1371" protId="Q7UPS3" geneId="RB6755"/>
        <gene id="1373" protId="Q7UU37" geneId="RB3532"/>
        <gene id="1375" protId="Q7UPM5" geneId="glmU"/>
        <gene id="1378" protId="Q7USG1" geneId="RB4517"/>
        <gene id="1380" protId="Q7UFR1" geneId="tdk"/>
        <gene id="1382" protId="Q7UIE3" geneId="RB12590"/>
        <gene id="1384" protId="Q7ULX4" geneId="nnrE"/>
        <gene id="1386" protId="Q7UIC9" geneId="folA"/>
        <gene id="1388" protId="Q7UN15" geneId="rplV"/>
        <gene id="1390" protId="Q7UXF5" geneId="glgC"/>
        <gene id="1400" protId="Q7UWN2" geneId="RB1909"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="R.baltica" link="http://www.uniprot.org/taxonomy/243090"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
    <orthologGroup id="1">
      <score id="bit" value="1064"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="948"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="0.24"/>
      </geneRef>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="775"/>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="0.744"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="0.684"/>
      </geneRef>
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</orthoXML>
