<?xml version="1.0" encoding="utf-8"?>
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  </notes>
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    <notes>
      <additionalInformation abbreviation="P.aerophilum" link="http://www.uniprot.org/taxonomy/178306"/>
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        <gene id="461" protId="A3GG91" geneId="KPR4"/>
        <gene id="462" protId="A3LTI2" geneId="PRS1"/>
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        <gene id="469" protId="A3M0F2" geneId="CIT1"/>
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        <gene id="474" protId="A3LR58" geneId="CDR5"/>
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        <gene id="603" protId="A3LR75" geneId="PICST_57591"/>
        <gene id="605" protId="A3GH30" geneId="COQ1"/>
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        <gene id="610" protId="A3GEY7" geneId="MAP1"/>
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        <gene id="614" protId="A3LS70" geneId="PICST_30944"/>
        <gene id="616" protId="A3LT93" geneId="PICST_58964"/>
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        <gene id="841" protId="A3LRY6" geneId="PICST_44059"/>
        <gene id="846" protId="A3LTU5" geneId="PICST_45688"/>
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        <gene id="851" protId="A3LST9" geneId="STE24"/>
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        <gene id="855" protId="A3LWU7" geneId="PHO3.2"/>
        <gene id="857" protId="A3GI76" geneId="PICST_39982"/>
        <gene id="859" protId="A3GGY3" geneId="PICST_51362"/>
        <gene id="861" protId="A3LTU3" geneId="PICST_31531"/>
        <gene id="863" protId="A3LYZ0" geneId="PICST_63621"/>
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        <gene id="867" protId="A3GHB0" geneId="PICST_69783"/>
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        <gene id="873" protId="A3GFU4" geneId="RPL7B"/>
        <gene id="874" protId="A3LXY8" geneId="PICST_62698"/>
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        <gene id="880" protId="A3LUD7" geneId="PICST_59509"/>
        <gene id="882" protId="A3LX38" geneId="RPL13"/>
        <gene id="885" protId="A3GFC3" geneId="VPS29"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="S.stipitis" link="http://www.uniprot.org/taxonomy/322104"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.82"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="766"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="660"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="634"/>
      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="8">
        <score id="inparalog" value="0.354"/>
      </geneRef>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.98"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="514"/>
      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
      <geneRef id="11">
        <score id="inparalog" value="0.059"/>
      </geneRef>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="13">
        <score id="inparalog" value="0.39"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="479"/>
      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="478"/>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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