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  <notes>
    <stats ortholog_groups="2350" inparalogs="6306"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Oreochromis niloticus " NCBITaxId="8128">
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    <notes>
      <additionalInformation abbreviation="O.niloticus" link="http://www.uniprot.org/taxonomy/8128"/>
    </notes>
  </species>
  <species name="Paracoccidioides brasiliensis " NCBITaxId="482561">
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    <notes>
      <additionalInformation abbreviation="P.brasiliensis" link="http://www.uniprot.org/taxonomy/482561"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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