<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1867" inparalogs="5010"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Meleagris gallopavo " NCBITaxId="9103">
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    <notes>
      <additionalInformation abbreviation="M.gallopavo" link="http://www.uniprot.org/taxonomy/9103"/>
    </notes>
  </species>
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        <gene id="4724" protId="B8CF09" geneId="THAPSDRAFT_264728"/>
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        <gene id="4748" protId="B5YLM8" geneId="THAPS_10835"/>
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        <gene id="4751" protId="B8BWT8" geneId="THAPSDRAFT_21600"/>
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        <gene id="4755" protId="B8BVV5" geneId="THAPSDRAFT_39726"/>
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        <gene id="4795" protId="B5YNG1" geneId="THAPS_7138"/>
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        <gene id="4804" protId="B8BVQ4" geneId="THAPSDRAFT_261569"/>
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        <gene id="4823" protId="B8C915" geneId="THAPSDRAFT_263622"/>
        <gene id="4824" protId="B8BYQ7" geneId="THAPSDRAFT_261895"/>
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        <gene id="4953" protId="B8CBS7" geneId="THAPSDRAFT_9598"/>
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        <gene id="4959" protId="B8CD65" geneId="THAPSDRAFT_24977"/>
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        <gene id="4991" protId="B8CG82" geneId="THAPSDRAFT_270121"/>
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        <gene id="4996" protId="B8LC03" geneId="THAPSDRAFT_8773"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.pseudonana" link="http://www.uniprot.org/taxonomy/35128"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3224"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="3155"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="0.297"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="0.29"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="3078"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="10">
        <score id="inparalog" value="0.437"/>
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      <geneRef id="11">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="2085"/>
      <geneRef id="12">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="13">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="1603"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="1552"/>
      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="17">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
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      <geneRef id="18">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="19">
        <score id="inparalog" value="0.775"/>
      </geneRef>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="9">
      <score id="bit" value="1509"/>
      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="22">
        <score id="inparalog" value="0.622"/>
      </geneRef>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.78"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="10">
      <score id="bit" value="1388"/>
      <geneRef id="24">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="25">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="1354"/>
      <geneRef id="26">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="27">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="12">
      <score id="bit" value="1339"/>
      <geneRef id="28">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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