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  <notes>
    <stats ortholog_groups="1942" inparalogs="5112"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Meleagris gallopavo " NCBITaxId="9103">
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    <notes>
      <additionalInformation abbreviation="M.gallopavo" link="http://www.uniprot.org/taxonomy/9103"/>
    </notes>
  </species>
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        <gene id="4826" protId="E3KAI8" geneId="PGTG_07026"/>
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        <gene id="4840" protId="E3KLN8" geneId="PGTG_11406"/>
        <gene id="4843" protId="E3KG66" geneId="PGTG_09115"/>
        <gene id="4845" protId="E3JQB0" geneId="PGTG_00335"/>
        <gene id="4847" protId="E3K9C7" geneId="PGTG_07314"/>
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        <gene id="4851" protId="E3L362" geneId="PGTG_17259"/>
        <gene id="4853" protId="E3KY02" geneId="PGTG_15044"/>
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        <gene id="4898" protId="H6QPD2" geneId="PGTG_20682"/>
        <gene id="4900" protId="E3LB28" geneId="PGTG_19780"/>
        <gene id="4903" protId="E3KB48" geneId="PGTG_07817"/>
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        <gene id="4909" protId="E3K4H2" geneId="PGTG_05479"/>
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        <gene id="4927" protId="E3LC17" geneId="PGTG_20079"/>
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        <gene id="4929" protId="E3KQK2" geneId="PGTG_12959"/>
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        <gene id="5030" protId="E3KAK6" geneId="PGTG_06951"/>
        <gene id="5032" protId="E3KLC6" geneId="PGTG_11270"/>
        <gene id="5034" protId="E3K6B1" geneId="PGTG_05066"/>
        <gene id="5038" protId="E3KFY3" geneId="PGTG_09207"/>
        <gene id="5042" protId="E3KDL8" geneId="PGTG_08410"/>
        <gene id="5044" protId="E3KJ35" geneId="PGTG_10030"/>
        <gene id="5045" protId="E3KPD6" geneId="PGTG_12117"/>
        <gene id="5047" protId="E3KL29" geneId="PGTG_11173"/>
        <gene id="5049" protId="E3K8U1" geneId="PGTG_06603"/>
        <gene id="5053" protId="E3KYF2" geneId="PGTG_15522"/>
        <gene id="5054" protId="E3KDY9" geneId="PGTG_08307"/>
        <gene id="5055" protId="E3KE06" geneId="PGTG_08319"/>
        <gene id="5058" protId="E3JXX5" geneId="PGTG_02361"/>
        <gene id="5060" protId="E3KWI8" geneId="PGTG_14747"/>
        <gene id="5061" protId="E3L3X9" geneId="PGTG_17111"/>
        <gene id="5063" protId="E3JPU7" geneId="PGTG_00516"/>
        <gene id="5065" protId="E3JSD0" geneId="PGTG_01448"/>
        <gene id="5067" protId="E3KB43" geneId="PGTG_08005"/>
        <gene id="5069" protId="E3KIK0" geneId="PGTG_10503"/>
        <gene id="5071" protId="E3L0Z3" geneId="PGTG_16496"/>
        <gene id="5073" protId="E3KPA2" geneId="PGTG_12083"/>
        <gene id="5075" protId="E3K4C3" geneId="PGTG_05722"/>
        <gene id="5086" protId="E3KT27" geneId="PGTG_13641"/>
        <gene id="5088" protId="E3K3P5" geneId="PGTG_04653"/>
        <gene id="5089" protId="E3NXW0" geneId="PGTG_20365"/>
        <gene id="5091" protId="E3JVT8" geneId="PGTG_02604"/>
        <gene id="5100" protId="E3JYF0" geneId="PGTG_03031"/>
        <gene id="5103" protId="E3JZA6" geneId="PGTG_03337"/>
        <gene id="5109" protId="E3K153" geneId="PGTG_03984"/>
        <gene id="5110" protId="E3L9M4" geneId="PGTG_19195"/>
        <gene id="5112" protId="E3KC91" geneId="PGTG_08098"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="P.graminis" link="http://www.uniprot.org/taxonomy/418459"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <score id="bit" value="4842"/>
      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3737"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2060"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="7">
        <score id="inparalog" value="0.196"/>
      </geneRef>
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