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        <gene id="537" protId="A4IDL9" geneId="LINJ_36_4620"/>
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    <notes>
      <additionalInformation abbreviation="L.infantum" link="http://www.uniprot.org/taxonomy/5671"/>
    </notes>
  </species>
  <species name="Thermodesulfovibrio yellowstonii " NCBITaxId="289376">
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        <gene id="492" protId="B5YIN1" geneId="era"/>
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        <gene id="521" protId="B5YIQ0" geneId="THEYE_A0362"/>
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        <gene id="540" protId="B5YKV0" geneId="THEYE_A1037"/>
        <gene id="542" protId="B5YGH8" geneId="rplI1"/>
        <gene id="544" protId="B5YKM8" geneId="htpX"/>
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        <gene id="548" protId="B5YJL0" geneId="rimI"/>
        <gene id="550" protId="B5YL48" geneId="THEYE_A1139"/>
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        <gene id="554" protId="B5YFY8" geneId="rph"/>
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        <gene id="559" protId="B5YJ57" geneId="THEYE_A0425"/>
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        <gene id="561" protId="B5YGE7" geneId="THEYE_A1549"/>
        <gene id="562" protId="B5YJB6" geneId="THEYE_A0486"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.yellowstonii" link="http://www.uniprot.org/taxonomy/289376"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
  <groups>
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      <geneRef id="1">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="777"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.65"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.98"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="764"/>
      <geneRef id="5">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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