<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="1979" inparalogs="5237"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Latimeria chalumnae PE=4 SV=1" NCBITaxId="7897">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="3" protId="H3AU29" geneId="CAD"/>
        <gene id="5" protId="H3AU80" geneId="ACACB"/>
        <gene id="6" protId="H3BFJ1" geneId="ACACA"/>
        <gene id="8" protId="H3B1H3" geneId="DYNC1H1"/>
        <gene id="10" protId="H3BCH2" geneId="POLE"/>
        <gene id="12" protId="H3AN14" geneId="CLTC"/>
        <gene id="13" protId="H3AKV2" geneId="CLTCL1"/>
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        <gene id="17" protId="H3A0Y3" geneId="POLR2B"/>
        <gene id="19" protId="H2ZS81" geneId="SNRNP200"/>
        <gene id="21" protId="H3BBW8" geneId="POLR3B"/>
        <gene id="23" protId="H3BGV0" geneId="POLR3A"/>
        <gene id="25" protId="H2ZUU5" geneId="uncharacterized_H2ZUU5"/>
        <gene id="27" protId="H3BI03" geneId="IARS"/>
        <gene id="29" protId="H3A6N0" geneId="uncharacterized_H3A6N0"/>
        <gene id="30" protId="H3ASK6" geneId="uncharacterized_H3ASK6"/>
        <gene id="32" protId="H3AQ24" geneId="BTAF1"/>
        <gene id="34" protId="H3AKY2" geneId="SKIV2L2"/>
        <gene id="36" protId="H3AI30" geneId="RRM1"/>
        <gene id="38" protId="H3A6E7" geneId="NAT10"/>
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        <gene id="54" protId="H3B4D4" geneId="uncharacterized_H3B4D4"/>
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        <gene id="59" protId="H3BGE5" geneId="uncharacterized_H3BGE5"/>
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        <gene id="72" protId="H2ZW74" geneId="uncharacterized_H2ZW74"/>
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        <gene id="82" protId="H3BA48" geneId="MTHFD1"/>
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        <gene id="87" protId="H3A782" geneId="AARS"/>
        <gene id="89" protId="H3B4L8" geneId="SF3B1"/>
        <gene id="91" protId="H3B5X3" geneId="VARS"/>
        <gene id="93" protId="H3B8B4" geneId="ATP13A1"/>
        <gene id="95" protId="H3AEU0" geneId="DHX15"/>
        <gene id="97" protId="H3AQ38" geneId="HSP90AB1"/>
        <gene id="98" protId="H2ZTU7" geneId="uncharacterized_H2ZTU7"/>
        <gene id="99" protId="H3B357" geneId="HSP90AA1"/>
        <gene id="101" protId="H3AQQ2" geneId="OGDHL"/>
        <gene id="102" protId="H3BAN4" geneId="OGDH"/>
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        <gene id="108" protId="H3BFV4" geneId="HSPA5"/>
        <gene id="110" protId="H3AEC4" geneId="SDHA"/>
        <gene id="112" protId="H3A8H4" geneId="MYO5A"/>
        <gene id="113" protId="H3A979" geneId="MYO5B"/>
        <gene id="114" protId="H3B961" geneId="uncharacterized_H3B961"/>
        <gene id="116" protId="H3AHX2" geneId="ATP2C1"/>
        <gene id="117" protId="H3AEX1" geneId="ATP2C2"/>
        <gene id="119" protId="H3BH99" geneId="TARSL2"/>
        <gene id="120" protId="H3ALQ1" geneId="TARS"/>
        <gene id="122" protId="H3ALJ7" geneId="MYH9"/>
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        <gene id="125" protId="H3AVX9" geneId="MYH14"/>
        <gene id="126" protId="H3AW23" geneId="uncharacterized_H3AW23"/>
        <gene id="127" protId="H3AY11" geneId="uncharacterized_H3AY11"/>
        <gene id="128" protId="H3A7R4" geneId="MYH3"/>
        <gene id="129" protId="H3A495" geneId="MYH15"/>
        <gene id="130" protId="H3BFG5" geneId="MYH7B"/>
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        <gene id="137" protId="H3B556" geneId="ATP8B4"/>
        <gene id="138" protId="H3B1E3" geneId="ATP8B2"/>
        <gene id="139" protId="H2ZWK6" geneId="ATP8B1"/>
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        <gene id="170" protId="H2ZRK0" geneId="ATP5A1"/>
        <gene id="172" protId="H3AP88" geneId="SMC4"/>
        <gene id="174" protId="H3A6Q5" geneId="GFPT2"/>
        <gene id="175" protId="H3BG06" geneId="GFPT1"/>
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        <gene id="180" protId="H3ARK4" geneId="DIS3"/>
        <gene id="182" protId="H3AL07" geneId="HSPA9"/>
        <gene id="184" protId="H3B4J9" geneId="ERCC3"/>
        <gene id="186" protId="H3B8U3" geneId="uncharacterized_H3B8U3"/>
        <gene id="188" protId="H3AUF4" geneId="EIF5B"/>
        <gene id="190" protId="H3AYI8" geneId="IDE"/>
        <gene id="192" protId="H3BGX8" geneId="PC"/>
        <gene id="194" protId="H3AF19" geneId="TUBA1A"/>
        <gene id="195" protId="H3BI79" geneId="uncharacterized_H3BI79"/>
        <gene id="196" protId="H3BI74" geneId="uncharacterized_H3BI74"/>
        <gene id="197" protId="H3BI69" geneId="uncharacterized_H3BI69"/>
        <gene id="198" protId="H3AW62" geneId="uncharacterized_H3AW62"/>
        <gene id="199" protId="H3AGU3" geneId="TUBA4A"/>
        <gene id="200" protId="H3BF86" geneId="TUBA8"/>
        <gene id="201" protId="H2ZYC4" geneId="uncharacterized_H2ZYC4"/>
        <gene id="203" protId="H3A7C7" geneId="uncharacterized_H3A7C7"/>
        <gene id="204" protId="H3A954" geneId="uncharacterized_H3A954"/>
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        <gene id="206" protId="H3ASR3" geneId="uncharacterized_H3ASR3"/>
        <gene id="207" protId="H3AS44" geneId="uncharacterized_H3AS44"/>
        <gene id="208" protId="H3A580" geneId="TUBB6"/>
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        <gene id="211" protId="H3A4D6" geneId="ATIC"/>
        <gene id="213" protId="H3AAN7" geneId="uncharacterized_H3AAN7"/>
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        <gene id="217" protId="H3AHD8" geneId="PSMD2"/>
        <gene id="219" protId="M3XI54" geneId="GART"/>
        <gene id="221" protId="H3AYQ6" geneId="DHX38"/>
        <gene id="223" protId="H3BBJ9" geneId="uncharacterized_H3BBJ9"/>
        <gene id="224" protId="H2ZUX4" geneId="uncharacterized_H2ZUX4"/>
        <gene id="225" protId="H3A754" geneId="uncharacterized_H3A754"/>
        <gene id="226" protId="H3AUT1" geneId="ACTC1"/>
        <gene id="227" protId="H3AVL6" geneId="ACTA1"/>
        <gene id="228" protId="H3A626" geneId="uncharacterized_H3A626"/>
        <gene id="229" protId="H3A440" geneId="uncharacterized_H3A440"/>
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        <gene id="232" protId="H3BD82" geneId="CHD2"/>
        <gene id="234" protId="H2ZYP0" geneId="CCT5"/>
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        <gene id="241" protId="H3B705" geneId="NADSYN1"/>
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        <gene id="245" protId="H3BB48" geneId="ATP6V1B2"/>
        <gene id="246" protId="H3A405" geneId="uncharacterized_H3A405"/>
        <gene id="248" protId="H3B5F1" geneId="LONP1"/>
        <gene id="250" protId="H3BFQ8" geneId="XPO1"/>
        <gene id="252" protId="H2ZXA7" geneId="uncharacterized_H2ZXA7"/>
        <gene id="254" protId="H3A857" geneId="CCT2"/>
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        <gene id="258" protId="H3B1D6" geneId="PIKFYVE"/>
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        <gene id="274" protId="H3B9Q4" geneId="uncharacterized_H3B9Q4"/>
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        <gene id="2004" protId="H3BF19" geneId="ARCN1"/>
        <gene id="2006" protId="M3XGI7" geneId="BUB1"/>
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        <gene id="2014" protId="H3AHC1" geneId="uncharacterized_H3AHC1"/>
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        <gene id="2017" protId="H3BDU0" geneId="uncharacterized_H3BDU0"/>
        <gene id="2019" protId="H3AYC2" geneId="GCK"/>
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        <gene id="2023" protId="H3BC69" geneId="RRAS"/>
        <gene id="2025" protId="H3AF23" geneId="uncharacterized_H3AF23"/>
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        <gene id="2029" protId="H2ZWJ1" geneId="DNAJB5"/>
        <gene id="2030" protId="H3AYG8" geneId="DNAJB4"/>
        <gene id="2031" protId="H2ZW35" geneId="DNAJB1"/>
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        <gene id="4949" protId="H3ALH2" geneId="TFIP11"/>
        <gene id="4951" protId="H3B2Y7" geneId="DNAJC28"/>
        <gene id="4953" protId="H3B6I9" geneId="GTF3C5"/>
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        <gene id="4957" protId="M3XHH6" geneId="PEX2"/>
        <gene id="4959" protId="M3XK51" geneId="DENR"/>
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        <gene id="4962" protId="H2ZVU8" geneId="H1F0"/>
        <gene id="4963" protId="H3B8C4" geneId="uncharacterized_H3B8C4"/>
        <gene id="4964" protId="H3A552" geneId="uncharacterized_H3A552"/>
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        <gene id="4967" protId="H3AW52" geneId="SMYD2"/>
        <gene id="4968" protId="H3B8B0" geneId="SMYD3"/>
        <gene id="4970" protId="H3ARR6" geneId="SLC35D1"/>
        <gene id="4971" protId="H2ZUP3" geneId="uncharacterized_H2ZUP3"/>
        <gene id="4972" protId="H2ZXI4" geneId="uncharacterized_H2ZXI4"/>
        <gene id="4974" protId="H3A093" geneId="uncharacterized_H3A093"/>
        <gene id="4976" protId="H2ZW86" geneId="ACN9"/>
        <gene id="4978" protId="H2ZTZ7" geneId="RGN"/>
        <gene id="4980" protId="H3AAG9" geneId="uncharacterized_H3AAG9"/>
        <gene id="4982" protId="H3A210" geneId="SMG6"/>
        <gene id="4984" protId="H3ASU4" geneId="PITHD1"/>
        <gene id="4986" protId="H3B722" geneId="AANAT"/>
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        <gene id="4992" protId="H3BC91" geneId="TIMM8A"/>
        <gene id="4993" protId="H3B836" geneId="TIMM8B"/>
        <gene id="4995" protId="H2ZUS9" geneId="ZMAT2"/>
        <gene id="4997" protId="H3B3N4" geneId="TOMM20"/>
        <gene id="4999" protId="H3AXF2" geneId="SRD5A3"/>
        <gene id="5001" protId="H3AZ74" geneId="RHBDD1"/>
        <gene id="5002" protId="H3B361" geneId="uncharacterized_H3B361"/>
        <gene id="5004" protId="H3B7B0" geneId="TBCA"/>
        <gene id="5006" protId="H3BH93" geneId="PTGES3"/>
        <gene id="5008" protId="H3B5J4" geneId="AMFR"/>
        <gene id="5010" protId="H3B5V4" geneId="uncharacterized_H3B5V4"/>
        <gene id="5011" protId="M3XHC3" geneId="SLC17A5"/>
        <gene id="5012" protId="H3AW83" geneId="SLC17A7"/>
        <gene id="5013" protId="H3BDJ0" geneId="SLC17A8"/>
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        <gene id="5024" protId="H2ZYJ9" geneId="SLC39A3"/>
        <gene id="5025" protId="H3AYM7" geneId="uncharacterized_H3AYM7"/>
        <gene id="5026" protId="H3AKC0" geneId="uncharacterized_H3AKC0"/>
        <gene id="5027" protId="H3AAT6" geneId="SLC39A1"/>
        <gene id="5029" protId="H3ALI4" geneId="MRPL4"/>
        <gene id="5031" protId="H3AH57" geneId="PFDN2"/>
        <gene id="5033" protId="H3ASU5" geneId="OSTF1"/>
        <gene id="5035" protId="H3B004" geneId="C11orf73"/>
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        <gene id="5038" protId="H3BDZ0" geneId="SOX6"/>
        <gene id="5039" protId="H3AJR0" geneId="uncharacterized_H3AJR0"/>
        <gene id="5041" protId="H3APD3" geneId="DNAJB9"/>
        <gene id="5042" protId="H3B1Q3" geneId="uncharacterized_H3B1Q3"/>
        <gene id="5044" protId="H3BBG7" geneId="uncharacterized_H3BBG7"/>
        <gene id="5045" protId="H3AIU6" geneId="uncharacterized_H3AIU6"/>
        <gene id="5047" protId="H3A182" geneId="MRPS7"/>
        <gene id="5049" protId="H3AHD6" geneId="TMA16"/>
        <gene id="5051" protId="H3ALN9" geneId="MRPL44"/>
        <gene id="5053" protId="H3BD25" geneId="C22orf25"/>
        <gene id="5055" protId="H3BFP2" geneId="DERL2"/>
        <gene id="5056" protId="H3ANF9" geneId="DERL3"/>
        <gene id="5057" protId="H3AGE4" geneId="DERL1"/>
        <gene id="5059" protId="H3ALT5" geneId="CHRAC1"/>
        <gene id="5060" protId="H3BDB2" geneId="POLE4"/>
        <gene id="5062" protId="H3BFH3" geneId="PEX11A"/>
        <gene id="5063" protId="H3BER5" geneId="PEX11B"/>
        <gene id="5065" protId="H2ZUI6" geneId="SF3B5"/>
        <gene id="5067" protId="H3AN02" geneId="GPATCH4"/>
        <gene id="5069" protId="H3ALT0" geneId="uncharacterized_H3ALT0"/>
        <gene id="5071" protId="H3AH46" geneId="MLX"/>
        <gene id="5073" protId="H3AT77" geneId="AAR2"/>
        <gene id="5075" protId="H3AMF2" geneId="MRPS14"/>
        <gene id="5077" protId="H3BFW4" geneId="uncharacterized_H3BFW4"/>
        <gene id="5078" protId="H3AIK8" geneId="uncharacterized_H3AIK8"/>
        <gene id="5079" protId="H2ZVR2" geneId="uncharacterized_H2ZVR2"/>
        <gene id="5080" protId="H2ZTX9" geneId="uncharacterized_H2ZTX9"/>
        <gene id="5082" protId="H3A930" geneId="PUF60"/>
        <gene id="5084" protId="H3ABD4" geneId="IKZF5"/>
        <gene id="5085" protId="H3ATJ4" geneId="IKZF3"/>
        <gene id="5086" protId="H3AUT9" geneId="IKZF1"/>
        <gene id="5087" protId="H3APR6" geneId="IKZF4"/>
        <gene id="5088" protId="H3B641" geneId="IKZF2"/>
        <gene id="5091" protId="H3BCR6" geneId="EN1"/>
        <gene id="5092" protId="H2ZW78" geneId="EN2"/>
        <gene id="5093" protId="H3BCT9" geneId="HOXA5"/>
        <gene id="5094" protId="H3AVJ4" geneId="LHX8"/>
        <gene id="5095" protId="H3BCQ4" geneId="HOXA4"/>
        <gene id="5097" protId="H3AQ52" geneId="HMGCL"/>
        <gene id="5098" protId="H3AGM9" geneId="HMGCLL1"/>
        <gene id="5101" protId="H3AVQ3" geneId="PCBD1"/>
        <gene id="5102" protId="H3AAL5" geneId="PCBD2"/>
        <gene id="5104" protId="H3B851" geneId="uncharacterized_H3B851"/>
        <gene id="5107" protId="H3AG46" geneId="ATP5H"/>
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        <gene id="5111" protId="H3BGN8" geneId="uncharacterized_H3BGN8"/>
        <gene id="5113" protId="H3AUK0" geneId="PLSCR3"/>
        <gene id="5114" protId="H2ZT12" geneId="uncharacterized_H2ZT12"/>
        <gene id="5115" protId="H2ZS00" geneId="uncharacterized_H2ZS00"/>
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        <gene id="5119" protId="H3AXA7" geneId="ENY2"/>
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        <gene id="5127" protId="H3AVA3" geneId="uncharacterized_H3AVA3"/>
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        <gene id="5130" protId="H3AIQ0" geneId="LMAN1"/>
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        <gene id="5140" protId="H3A9U6" geneId="ALYREF"/>
        <gene id="5142" protId="H3B3Z5" geneId="CMC4"/>
        <gene id="5144" protId="H3BAE4" geneId="uncharacterized_H3BAE4"/>
        <gene id="5146" protId="H3BFT4" geneId="EXOSC5"/>
        <gene id="5148" protId="H3AVQ6" geneId="BCL3"/>
        <gene id="5149" protId="H3AG83" geneId="NFKBIE"/>
        <gene id="5150" protId="H3ABW1" geneId="uncharacterized_H3ABW1"/>
        <gene id="5151" protId="H3BG07" geneId="NFKBIB"/>
        <gene id="5153" protId="H3A4S3" geneId="COA6"/>
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        <gene id="5161" protId="H3B668" geneId="MRPL17"/>
        <gene id="5163" protId="H2ZTJ3" geneId="SGSM3"/>
        <gene id="5164" protId="H2ZXC2" geneId="TBC1D1"/>
        <gene id="5165" protId="H3BCW4" geneId="EVI5L"/>
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        <gene id="5170" protId="H3A073" geneId="CTU2"/>
        <gene id="5172" protId="H3APQ3" geneId="NAA38"/>
        <gene id="5174" protId="H3BBA1" geneId="DPY30"/>
        <gene id="5176" protId="H3B5S5" geneId="uncharacterized_H3B5S5"/>
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        <gene id="5180" protId="H2ZTA9" geneId="uncharacterized_H2ZTA9"/>
        <gene id="5181" protId="H2ZRT1" geneId="uncharacterized_H2ZRT1"/>
        <gene id="5182" protId="H3B6N1" geneId="uncharacterized_H3B6N1"/>
        <gene id="5183" protId="H3AH72" geneId="uncharacterized_H3AH72"/>
        <gene id="5184" protId="H3AA81" geneId="uncharacterized_H3AA81"/>
        <gene id="5185" protId="H3A2D1" geneId="uncharacterized_H3A2D1"/>
        <gene id="5186" protId="H3B3F5" geneId="uncharacterized_H3B3F5"/>
        <gene id="5188" protId="H3A275" geneId="CCNY"/>
        <gene id="5189" protId="H3B8W6" geneId="uncharacterized_H3B8W6"/>
        <gene id="5192" protId="H3AKE9" geneId="uncharacterized_H3AKE9"/>
        <gene id="5193" protId="H2ZXI6" geneId="IMPAD1"/>
        <gene id="5194" protId="H3AWW3" geneId="BPNT1"/>
        <gene id="5196" protId="H3A2N7" geneId="uncharacterized_H3A2N7"/>
        <gene id="5198" protId="H3B2Y9" geneId="uncharacterized_H3B2Y9"/>
        <gene id="5200" protId="H3BFM9" geneId="POP5"/>
        <gene id="5202" protId="H3BBI5" geneId="RGS5"/>
        <gene id="5203" protId="H3ACV4" geneId="RGS16"/>
        <gene id="5204" protId="H3AIZ0" geneId="RGS8"/>
        <gene id="5205" protId="H3ADZ3" geneId="uncharacterized_H3ADZ3"/>
        <gene id="5206" protId="H3BB24" geneId="RGS4"/>
        <gene id="5207" protId="H3AFG6" geneId="uncharacterized_H3AFG6"/>
        <gene id="5208" protId="H3AKS3" geneId="RGS18"/>
        <gene id="5209" protId="H2ZUS0" geneId="uncharacterized_H2ZUS0"/>
        <gene id="5210" protId="H3AB17" geneId="RGS2"/>
        <gene id="5211" protId="H3A088" geneId="RGS13"/>
        <gene id="5212" protId="H2ZWJ0" geneId="uncharacterized_H2ZWJ0"/>
        <gene id="5213" protId="H3BAA0" geneId="RGS20"/>
        <gene id="5214" protId="H3AW72" geneId="RGS10"/>
        <gene id="5215" protId="H3AC10" geneId="uncharacterized_H3AC10"/>
        <gene id="5217" protId="H3A2L2" geneId="SSBP2"/>
        <gene id="5218" protId="H2ZWY1" geneId="SSBP3"/>
        <gene id="5219" protId="H3BD07" geneId="SSBP4"/>
        <gene id="5221" protId="H3A4F5" geneId="TGFBI"/>
        <gene id="5222" protId="H3A7B0" geneId="POSTN"/>
        <gene id="5224" protId="H2ZWW6" geneId="RPP21"/>
        <gene id="5226" protId="H3A1X6" geneId="UQCR10"/>
        <gene id="5228" protId="H3ADU3" geneId="RANGRF"/>
        <gene id="5230" protId="H3AWF2" geneId="TRMT61B"/>
        <gene id="5232" protId="H3AZJ9" geneId="SDHAF1"/>
        <gene id="5234" protId="H3BAF0" geneId="NDUFAF5"/>
        <gene id="5236" protId="H2ZUN8" geneId="MRPL38"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="L.chalumnae" link="http://www.uniprot.org/taxonomy/7897"/>
    </notes>
  </species>
  <species name="Torulaspora delbrueckii " NCBITaxId="1076872">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="251" protId="G8ZYM8" geneId="TDEL0G01360"/>
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        <gene id="5177" protId="G8ZZQ1" geneId="TDEL0H02360"/>
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        <gene id="5187" protId="G8ZXT8" geneId="TDEL0G03380"/>
        <gene id="5190" protId="G8ZUM8" geneId="TDEL0E00790"/>
        <gene id="5191" protId="G8ZZH0" geneId="TDEL0H01550"/>
        <gene id="5195" protId="G8ZTV5" geneId="TDEL0D04650"/>
        <gene id="5197" protId="G8ZL57" geneId="TDEL0A00190"/>
        <gene id="5199" protId="G8ZWD9" geneId="TDEL0F01220"/>
        <gene id="5201" protId="G9A057" geneId="TDEL0H03920"/>
        <gene id="5216" protId="G8ZWE5" geneId="TDEL0F01280"/>
        <gene id="5220" protId="G8ZRL3" geneId="TDEL0C02660"/>
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        <gene id="5225" protId="G8ZZZ7" geneId="TDEL0H03320"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.delbrueckii" link="http://www.uniprot.org/taxonomy/1076872"/>
    </notes>
  </species>
  <scores>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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