<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1720" inparalogs="4969"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Leishmania braziliensis " NCBITaxId="5660">
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        <gene id="4717" protId="A4HMG2" geneId="LBRM_34_1320"/>
        <gene id="4719" protId="E9AIV4" geneId="LBRM_33_0911"/>
        <gene id="4721" protId="A4HFL5" geneId="LBRM_27_1000"/>
        <gene id="4723" protId="A4HQC0" geneId="LBRM_35_6320"/>
        <gene id="4725" protId="A4HCY0" geneId="LBRM_23_1190"/>
        <gene id="4726" protId="A4H4H0" geneId="LBRM_06_0020"/>
        <gene id="4736" protId="A4HPX6" geneId="LBRM_35_4830"/>
        <gene id="4738" protId="A4H9V8" geneId="LBRM_19_0320"/>
        <gene id="4740" protId="A4H7N3" geneId="LBRM_14_0760"/>
        <gene id="4742" protId="A4HFA7" geneId="LBRM_26_2560"/>
        <gene id="4744" protId="A4H3R1" geneId="LBRM_03_0900"/>
        <gene id="4745" protId="A4H7G0" geneId="LBRM_13_1560"/>
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        <gene id="4752" protId="A4HQ04" geneId="LBRM_35_5120"/>
        <gene id="4754" protId="A4HGK3" geneId="LBRM_28_1670"/>
        <gene id="4755" protId="A4HGK1" geneId="LBRM_28_1650"/>
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        <gene id="4771" protId="E9AIC4" geneId="LBRM_20_4910"/>
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        <gene id="4788" protId="A4HF27" geneId="LBRM_26_1740"/>
        <gene id="4821" protId="A4HB10" geneId="LBRM_20_2490"/>
        <gene id="4827" protId="A4HNH1" geneId="LBRM_34_5030"/>
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        <gene id="4830" protId="A4HA34" geneId="LBRM_19_1080"/>
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        <gene id="4851" protId="A4HPS0" geneId="LBRM_35_4260"/>
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        <gene id="4856" protId="A4HHU0" geneId="LBRM_29_2890"/>
        <gene id="4858" protId="A4HNL2" geneId="LBRM_35_0120"/>
        <gene id="4860" protId="A4HQL3" geneId="LBRM_35_7290"/>
        <gene id="4862" protId="A4HCM3" geneId="LBRM_23_0110"/>
        <gene id="4868" protId="A4HK57" geneId="LBRM_32_0850"/>
        <gene id="4871" protId="A4HDQ3" geneId="LBRM_24_1990"/>
        <gene id="4874" protId="A4H9Q3" geneId="LBRM_18_1530"/>
        <gene id="4876" protId="A4H5T5" geneId="LBRM_09_1120"/>
        <gene id="4878" protId="A4HKI1" geneId="LBRM_32_2110"/>
        <gene id="4880" protId="A4HI61" geneId="LBRM_30_1180"/>
        <gene id="4882" protId="A4HJC8" geneId="LBRM_31_1680"/>
        <gene id="4883" protId="A4HJX1" geneId="LbrM_31_3700"/>
        <gene id="4884" protId="A4HBX3" geneId="LBRM_21_1370"/>
        <gene id="4885" protId="A4H5P0" geneId="LBRM_09_0660"/>
        <gene id="4912" protId="A4H689" geneId="LBRM_10_1110"/>
        <gene id="4915" protId="A4H562" geneId="LBRM_07_1210"/>
        <gene id="4918" protId="A4HNT1" geneId="LBRM_35_0830"/>
        <gene id="4921" protId="A4HNB4" geneId="LBRM_34_4440"/>
        <gene id="4923" protId="A4H4S8" geneId="LBRM_06_1150"/>
        <gene id="4925" protId="A4HLL3" geneId="LBRM_33_1790"/>
        <gene id="4927" protId="A4H960" geneId="LBRM_17_1160"/>
        <gene id="4928" protId="A4HGL0" geneId="LBRM_28_1740"/>
        <gene id="4929" protId="A4H956" geneId="LBRM_17_1120"/>
        <gene id="4930" protId="A4H959" geneId="LBRM_17_1150"/>
        <gene id="4932" protId="A4HGB0" geneId="LBRM_28_0720"/>
        <gene id="4936" protId="A4HL12" geneId="LBRM_32_3990"/>
        <gene id="4937" protId="A4H5P7" geneId="LBRM_09_0740"/>
        <gene id="4939" protId="A4H6Q8" geneId="LBRM_11_1120"/>
        <gene id="4941" protId="A4HAY7" geneId="LBRM_20_2260"/>
        <gene id="4943" protId="A4HAN4" geneId="LBRM_20_1200"/>
        <gene id="4945" protId="A4HDM2" geneId="LBRM_24_1680"/>
        <gene id="4950" protId="A4HI21" geneId="LBRM_30_0780"/>
        <gene id="4952" protId="A4HH79" geneId="LbrM29_V2.0730"/>
        <gene id="4954" protId="A4HM60" geneId="LBRM_34_0250"/>
        <gene id="4956" protId="A4HLK8" geneId="LBRM_33_1740"/>
        <gene id="4957" protId="A4HLK6" geneId="LBRM_33_1720"/>
        <gene id="4958" protId="A4HF08" geneId="LBRM_26_1550"/>
        <gene id="4960" protId="A4HAA9" geneId="LBRM_19_1860"/>
        <gene id="4962" protId="A4H8K3" geneId="LBRM_16_0800"/>
        <gene id="4968" protId="A4HM70" geneId="LBRM_34_0350"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="L.braziliensis" link="http://www.uniprot.org/taxonomy/5660"/>
    </notes>
  </species>
  <species name="Oreochromis niloticus " NCBITaxId="8128">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
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        <gene id="5" protId="I3JVV3" geneId="uncharacterized_I3JVV3"/>
        <gene id="6" protId="I3J424" geneId="uncharacterized_I3J424"/>
        <gene id="8" protId="I3JJG4" geneId="uncharacterized_I3JJG4"/>
        <gene id="9" protId="I3KQK5" geneId="uncharacterized_I3KQK5"/>
        <gene id="11" protId="I3KVC4" geneId="LOC100711967"/>
        <gene id="13" protId="I3KWX1" geneId="uncharacterized_I3KWX1"/>
        <gene id="15" protId="I3JC18" geneId="LOC100700807"/>
        <gene id="17" protId="I3JA38" geneId="dnah7"/>
        <gene id="18" protId="I3KLD1" geneId="uncharacterized_I3KLD1"/>
        <gene id="20" protId="I3JBA9" geneId="LOC100700433"/>
        <gene id="22" protId="I3JN21" geneId="prpf8"/>
        <gene id="24" protId="I3IZI1" geneId="mdn1"/>
        <gene id="26" protId="I3KI85" geneId="ascc3"/>
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        <gene id="29" protId="I3J8W7" geneId="LOC100696002"/>
        <gene id="31" protId="I3JJQ4" geneId="LOC100693817"/>
        <gene id="33" protId="I3K7B0" geneId="pole"/>
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        <gene id="36" protId="I3J0M0" geneId="acaca"/>
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        <gene id="39" protId="I3JD68" geneId="LOC100711908"/>
        <gene id="40" protId="I3KAA2" geneId="LOC100691387"/>
        <gene id="42" protId="I3KFG3" geneId="LOC100699965"/>
        <gene id="44" protId="I3JGC0" geneId="uncharacterized_I3JGC0"/>
        <gene id="46" protId="I3K7U3" geneId="LOC100691928"/>
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        <gene id="49" protId="I3KAG2" geneId="oplah"/>
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        <gene id="71" protId="I3K684" geneId="uncharacterized_I3K684"/>
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        <gene id="92" protId="I3IXF3" geneId="LOC100708775"/>
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        <gene id="99" protId="I3K022" geneId="ATP2A1 (1 of 2)"/>
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        <gene id="105" protId="I3KWI4" geneId="LOC100712415"/>
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        <gene id="171" protId="I3K3Y3" geneId="ATP6V1B2"/>
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        <gene id="189" protId="I3KKR9" geneId="uncharacterized_I3KKR9"/>
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        <gene id="195" protId="I3KC26" geneId="LOC100692076"/>
        <gene id="197" protId="I3KAV0" geneId="DHX15 (1 of 2)"/>
        <gene id="199" protId="I3KP76" geneId="uncharacterized_I3KP76"/>
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        <gene id="202" protId="I3IVV7" geneId="ogdh"/>
        <gene id="203" protId="I3K019" geneId="OGDH (2 of 2)"/>
        <gene id="204" protId="I3KQ77" geneId="ogdhl"/>
        <gene id="206" protId="I3KAA0" geneId="cct5"/>
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        <gene id="210" protId="I3K5Z7" geneId="LOC100689799"/>
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        <gene id="213" protId="I3J409" geneId="GPI (1 of 3)"/>
        <gene id="215" protId="I3JH32" geneId="NDUFV1 (2 of 2)"/>
        <gene id="217" protId="I3KJX9" geneId="LOC100694545"/>
        <gene id="220" protId="I3J9M7" geneId="LOC100695308"/>
        <gene id="222" protId="I3K7G2" geneId="LOC100708649"/>
        <gene id="224" protId="I3JUM4" geneId="smarca5"/>
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        <gene id="228" protId="I3KNQ2" geneId="LOC100709074"/>
        <gene id="230" protId="I3KLU2" geneId="LOC100708215"/>
        <gene id="232" protId="I3JES6" geneId="LOC100711729"/>
        <gene id="233" protId="I3IZ28" geneId="myo1e"/>
        <gene id="234" protId="I3JUV4" geneId="myo1f"/>
        <gene id="236" protId="I3JQC4" geneId="ATP5B (2 of 2)"/>
        <gene id="238" protId="I3KHC4" geneId="LOC100698498"/>
        <gene id="240" protId="I3KR58" geneId="eif5b"/>
        <gene id="242" protId="I3IWM4" geneId="LOC100698741"/>
        <gene id="244" protId="I3K374" geneId="LOC100696277"/>
        <gene id="245" protId="I3J8G4" geneId="LOC100706828"/>
        <gene id="246" protId="I3JQT0" geneId="LOC100699414"/>
        <gene id="248" protId="I3KAL1" geneId="LOC100711023"/>
        <gene id="250" protId="I3JLJ9" geneId="LOC100706962"/>
        <gene id="252" protId="I3KMI2" geneId="gtpbp4"/>
        <gene id="254" protId="I3IVR5" geneId="LOC100700698"/>
        <gene id="256" protId="I3J7X8" geneId="ATP2B1 (1 of 2)"/>
        <gene id="257" protId="I3KAA6" geneId="LOC100690326"/>
        <gene id="258" protId="I3JNB7" geneId="LOC100704157"/>
        <gene id="259" protId="I3IVJ2" geneId="LOC100696627"/>
        <gene id="260" protId="I3IVQ0" geneId="LOC100705275"/>
        <gene id="262" protId="I3JG29" geneId="abcf2"/>
        <gene id="264" protId="I3IY84" geneId="LOC100691348"/>
        <gene id="266" protId="I3JCS4" geneId="LOC100702262"/>
        <gene id="267" protId="I3IV70" geneId="ganc"/>
        <gene id="269" protId="I3J315" geneId="LOC100708662"/>
        <gene id="271" protId="I3K6A8" geneId="LOC100707907"/>
        <gene id="274" protId="I3K867" geneId="LOC100696752"/>
        <gene id="276" protId="I3J2A0" geneId="atp8a1"/>
        <gene id="277" protId="I3K9D8" geneId="atp8a2"/>
        <gene id="278" protId="I3JNV0" geneId="atp8b4"/>
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        <gene id="280" protId="I3K5U0" geneId="LOC100710384"/>
        <gene id="281" protId="I3JG82" geneId="LOC100702286"/>
        <gene id="282" protId="I3K4F8" geneId="uncharacterized_I3K4F8"/>
        <gene id="283" protId="I3KTA5" geneId="LOC100696526"/>
        <gene id="284" protId="I3JAY3" geneId="uncharacterized_I3JAY3"/>
        <gene id="286" protId="I3IY83" geneId="LOC100695284"/>
        <gene id="288" protId="I3KBL8" geneId="LOC100698444"/>
        <gene id="289" protId="I3K7J0" geneId="LOC100708802"/>
        <gene id="291" protId="I3JQ55" geneId="cct6a"/>
        <gene id="293" protId="I3JJR8" geneId="bms1"/>
        <gene id="295" protId="I3IXY1" geneId="LOC100690632"/>
        <gene id="297" protId="I3IXX3" geneId="LOC100704062"/>
        <gene id="299" protId="I3JXE6" geneId="LOC100704021"/>
        <gene id="301" protId="I3KDS6" geneId="LOC100690973"/>
        <gene id="303" protId="I3JMQ9" geneId="LOC100712325"/>
        <gene id="305" protId="I3IY02" geneId="ATP6V0A1 (2 of 2)"/>
        <gene id="306" protId="I3K6T2" geneId="uncharacterized_I3K6T2"/>
        <gene id="307" protId="I3J6G2" geneId="atp6v0a2"/>
        <gene id="308" protId="I3JBA3" geneId="LOC100698400"/>
        <gene id="310" protId="I3JF07" geneId="LOC100711282"/>
        <gene id="311" protId="I3J1P5" geneId="LOC100704539"/>
        <gene id="313" protId="I3K5Y1" geneId="nvl"/>
        <gene id="315" protId="I3J5Y4" geneId="eftud1"/>
        <gene id="317" protId="I3K0Q8" geneId="LOC100690674"/>
        <gene id="318" protId="I3K5G4" geneId="uncharacterized_I3K5G4"/>
        <gene id="320" protId="I3J2Y9" geneId="IDH2 (2 of 2)"/>
        <gene id="322" protId="I3KHY8" geneId="LOC100690634"/>
        <gene id="324" protId="I3KJ04" geneId="uncharacterized_I3KJ04"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="O.niloticus" link="http://www.uniprot.org/taxonomy/8128"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="5">
        <score id="inparalog" value="0.395"/>
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        <score id="inparalog" value="0.342"/>
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    </orthologGroup>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="9">
        <score id="inparalog" value="0.331"/>
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      <score id="bit" value="2998"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="2713"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="18">
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