<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="3288" inparalogs="7457"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
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    <notes>
      <additionalInformation abbreviation="L.bicolor" link="http://www.uniprot.org/taxonomy/486041"/>
    </notes>
  </species>
  <species name="Marssonina brunnea f. sp. multigermtubi " NCBITaxId="1072389">
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        <gene id="7241" protId="K1XAI3" geneId="MBM_04052"/>
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        <gene id="7245" protId="K1WLT9" geneId="MBM_08690"/>
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        <gene id="7276" protId="K1Y712" geneId="MBM_00092"/>
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        <gene id="7284" protId="K1WJ62" geneId="MBM_08875"/>
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        <gene id="7308" protId="K1WQT9" geneId="MBM_06913"/>
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        <gene id="7316" protId="K1X1P4" geneId="MBM_03174"/>
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        <gene id="7421" protId="K1X479" geneId="MBM_06131"/>
        <gene id="7423" protId="K1W4Z7" geneId="MBM_09858"/>
        <gene id="7425" protId="K1XIL2" geneId="MBM_09489"/>
        <gene id="7427" protId="K1Y428" geneId="MBM_01891"/>
        <gene id="7431" protId="K1XY84" geneId="MBM_04138"/>
        <gene id="7433" protId="K1WNL0" geneId="MBM_08148"/>
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        <gene id="7439" protId="K1WZX6" geneId="MBM_03994"/>
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        <gene id="7445" protId="K1XEK9" geneId="MBM_02560"/>
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      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="M.brunnea" link="http://www.uniprot.org/taxonomy/1072389"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="2">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="2">
      <score id="bit" value="3483"/>
      <geneRef id="3">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="2963"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="6">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="4">
      <score id="bit" value="2455"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="8">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="5">
      <score id="bit" value="2450"/>
      <geneRef id="9">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="6">
      <score id="bit" value="2444"/>
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        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="2227"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="14">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="8">
      <score id="bit" value="2162"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="16">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="18">
        <score id="inparalog" value="0.355"/>
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      <geneRef id="19">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
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    <orthologGroup id="10">
      <score id="bit" value="2126"/>
      <geneRef id="20">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="21">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="11">
      <score id="bit" value="2011"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="23">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="12">
      <score id="bit" value="1959"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="25">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="13">
      <score id="bit" value="1874"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="27">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="14">
      <score id="bit" value="1871"/>
      <geneRef id="28">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="29">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="15">
      <score id="bit" value="1520"/>
      <geneRef id="30">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="31">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="16">
      <score id="bit" value="1513"/>
      <geneRef id="32">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="33">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="17">
      <score id="bit" value="1508"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
      <geneRef id="35">
        <score id="inparalog" value="1"/>
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