<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="590" inparalogs="2053"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Loxodonta africana " NCBITaxId="9785">
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    <notes>
      <additionalInformation abbreviation="L.africana" link="http://www.uniprot.org/taxonomy/9785"/>
    </notes>
  </species>
  <species name="Streptomyces coelicolor " NCBITaxId="100226">
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        <gene id="1967" protId="Q9RJ77" geneId="SCO1624"/>
        <gene id="1968" protId="Q9L1C6" geneId="SCO1556"/>
        <gene id="1970" protId="Q53876" geneId="glmM"/>
        <gene id="1971" protId="Q9KZL6" geneId="SCO3028"/>
        <gene id="1972" protId="Q9KZP4" geneId="SCO1388"/>
        <gene id="1975" protId="Q9RKH4" geneId="SCO3458"/>
        <gene id="1976" protId="Q9K410" geneId="SCO1323"/>
        <gene id="1979" protId="Q9RL48" geneId="pcp"/>
        <gene id="1983" protId="Q9RJK8" geneId="SCO0380"/>
        <gene id="1985" protId="P66337" geneId="rpsJ"/>
        <gene id="1987" protId="Q9F305" geneId="trmB"/>
        <gene id="1989" protId="Q9XAD6" geneId="SCO1920"/>
        <gene id="1992" protId="Q9AD86" geneId="SCO4909"/>
        <gene id="1994" protId="Q9RKL1" geneId="purC"/>
        <gene id="1996" protId="Q9RKX3" geneId="SCO1414"/>
        <gene id="1998" protId="Q53875" geneId="rpsI"/>
        <gene id="2026" protId="Q9KZR9" geneId="SCO2882"/>
        <gene id="2027" protId="Q9RJ74" geneId="SCO1627"/>
        <gene id="2028" protId="Q9KZI8" geneId="SCO1157"/>
        <gene id="2029" protId="Q9X833" geneId="SCO6066"/>
        <gene id="2030" protId="Q9ADJ3" geneId="SCO7466"/>
        <gene id="2031" protId="O86519" geneId="SCO5537"/>
        <gene id="2032" protId="Q9KZN3" geneId="SCO1399"/>
        <gene id="2033" protId="Q9R7V6" geneId="SCO5541"/>
        <gene id="2034" protId="Q9L140" geneId="SCO7419"/>
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        <gene id="2036" protId="Q9XAE1" geneId="SCO5292"/>
        <gene id="2037" protId="Q9RJQ5" geneId="SCO0585"/>
        <gene id="2038" protId="Q9KYK1" geneId="SCO6940"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="S.coelicolor" link="http://www.uniprot.org/taxonomy/100226"/>
    </notes>
  </species>
  <scores>
    <scoreDef id="bit" desc="BLAST score in bits of seed orthologs"/>
    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
  </scores>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
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      <score id="bit" value="921"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="4">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
      </geneRef>
    </orthologGroup>
    <orthologGroup id="3">
      <score id="bit" value="865"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <geneRef id="6">
        <score id="inparalog" value="0.286"/>
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      <geneRef id="7">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="754"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="0.302"/>
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      <geneRef id="10">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="5">
      <score id="bit" value="690"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="673"/>
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        <score id="inparalog" value="1"/>
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        <score id="inparalog" value="0.614"/>
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      <geneRef id="15">
        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    </orthologGroup>
    <orthologGroup id="7">
      <score id="bit" value="629"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="0.99"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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    <orthologGroup id="9">
      <score id="bit" value="618"/>
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        <score id="inparalog" value="1"/>
        <score id="bootstrap" value="1"/>
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      <score id="bit" value="617"/>
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        <score id="bootstrap" value="1"/>
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      <geneRef id="23">
        <score id="inparalog" value="0.439"/>
      </geneRef>
      <geneRef id="24">
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