<?xml version="1.0" encoding="utf-8"?>
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  <notes>
    <stats ortholog_groups="1959" inparalogs="4761"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Komagataella pastoris " NCBITaxId="644223">
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        <gene id="4613" protId="C4R461" geneId="PAS_chr3_0307"/>
        <gene id="4615" protId="C4R7H3" geneId="PAS_chr4_0309"/>
        <gene id="4617" protId="C4R1M7" geneId="PAS_chr2-1_0750"/>
        <gene id="4619" protId="C4R327" geneId="PAS_chr2-2_0035"/>
        <gene id="4621" protId="C4R4Z5" geneId="PAS_chr3_0584"/>
        <gene id="4623" protId="C4QWN0" geneId="PAS_chr1-1_0491"/>
        <gene id="4625" protId="C4R6F0" geneId="PAS_chr3_1073"/>
        <gene id="4627" protId="C4R0G0" geneId="PAS_chr2-1_0363"/>
        <gene id="4629" protId="C4R149" geneId="PAS_chr2-1_0587"/>
        <gene id="4639" protId="C4R4Q7" geneId="PAS_chr3_0495"/>
        <gene id="4643" protId="C4R5W5" geneId="PAS_chr3_0894"/>
        <gene id="4645" protId="C4QW39" geneId="PAS_chr1-1_0100"/>
        <gene id="4647" protId="C4R5F9" geneId="PAS_chr3_0745"/>
        <gene id="4649" protId="C4R107" geneId="PAS_chr2-1_0547"/>
        <gene id="4651" protId="C4QXL5" geneId="PAS_chr1-4_0158"/>
        <gene id="4653" protId="C4R2Y6" geneId="PAS_chr2-2_0456"/>
        <gene id="4656" protId="C4QV44" geneId="PAS_chr1-3_0062"/>
        <gene id="4658" protId="C4R010" geneId="PAS_chr2-1_0224"/>
        <gene id="4660" protId="C4QVD1" geneId="PAS_chr1-3_0144"/>
        <gene id="4662" protId="C4QX97" geneId="PAS_chr1-4_0039"/>
        <gene id="4664" protId="C4R2I3" geneId="PAS_chr2-2_0210"/>
        <gene id="4666" protId="C4QX54" geneId="PAS_chr1-1_0450"/>
        <gene id="4668" protId="C4R861" geneId="PAS_chr4_0973"/>
        <gene id="4670" protId="C4QYH8" geneId="PAS_chr1-4_0450"/>
        <gene id="4672" protId="C4R074" geneId="PAS_chr2-1_0284"/>
        <gene id="4674" protId="C4QZ80" geneId="PAS_FragB_0024"/>
        <gene id="4676" protId="C4R0H1" geneId="PAS_chr2-1_0374"/>
        <gene id="4678" protId="C4R7H5" geneId="PAS_chr4_0310"/>
        <gene id="4680" protId="C4R0A9" geneId="PAS_chr2-1_0318"/>
        <gene id="4682" protId="C4R3W6" geneId="PAS_chr3_0221"/>
        <gene id="4684" protId="C4R1P1" geneId="PAS_chr2-1_0761"/>
        <gene id="4686" protId="C4QZK4" geneId="PAS_chr2-1_0077"/>
        <gene id="4691" protId="C4R965" geneId="PAS_chr4_0870"/>
        <gene id="4693" protId="C4R3F0" geneId="PAS_chr3_0057"/>
        <gene id="4695" protId="C4R4I7" geneId="PAS_chr3_0424"/>
        <gene id="4696" protId="C4R2A6" geneId="PAS_chr2-2_0283"/>
        <gene id="4698" protId="C4R1R6" geneId="PAS_chr2-1_0890"/>
        <gene id="4700" protId="C4R2X5" geneId="PAS_chr2-2_0080"/>
        <gene id="4701" protId="C4R2X6" geneId="PAS_chr2-2_0079"/>
        <gene id="4702" protId="C4R457" geneId="PAS_chr3_0302"/>
        <gene id="4704" protId="C4R8M6" geneId="PAS_chr4_0690"/>
        <gene id="4706" protId="C4R0Q1" geneId="PAS_chr2-1_0448"/>
        <gene id="4708" protId="C4QW65" geneId="PAS_chr1-1_0127"/>
        <gene id="4712" protId="C4R007" geneId="PAS_chr2-1_0221"/>
        <gene id="4715" protId="C4QY38" geneId="PAS_chr1-4_0320"/>
        <gene id="4717" protId="C4R4P8" geneId="PAS_chr3_0485"/>
        <gene id="4719" protId="C4R2E2" geneId="PAS_chr2-2_0481"/>
        <gene id="4720" protId="C4R503" geneId="PAS_chr3_0591"/>
        <gene id="4723" protId="C4R186" geneId="PAS_chr2-1_0620"/>
        <gene id="4726" protId="C4R2B0" geneId="PAS_chr2-2_0278"/>
        <gene id="4728" protId="C4QZ98" geneId="PAS_FragB_0076"/>
        <gene id="4730" protId="C4R678" geneId="PAS_chr3_1002"/>
        <gene id="4732" protId="C4R4C0" geneId="PAS_chr3_0363"/>
        <gene id="4734" protId="C4R8B2" geneId="PAS_chr4_0578"/>
        <gene id="4736" protId="C4R3K8" geneId="PAS_chr3_0114"/>
        <gene id="4738" protId="C4R0F7" geneId="PAS_chr2-1_0361"/>
        <gene id="4740" protId="C4R2X9" geneId="PAS_chr2-2_0077"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="K.pastoris" link="http://www.uniprot.org/taxonomy/644223"/>
    </notes>
  </species>
  <species name="Tribolium castaneum " NCBITaxId="7070">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="4" protId="D6WRL4" geneId="TcasGA2_TC008801"/>
        <gene id="6" protId="D6WK43" geneId="TcasGA2_TC013000"/>
        <gene id="8" protId="D6X207" geneId="TcasGA2_TC012392"/>
        <gene id="10" protId="D6WRF4" geneId="TcasGA2_TC009471"/>
        <gene id="12" protId="D6WXL5" geneId="TcasGA2_TC005546"/>
        <gene id="14" protId="D2A5X8" geneId="GLEAN_15613"/>
        <gene id="16" protId="D2A6C5" geneId="GLEAN_15014"/>
        <gene id="18" protId="D6WSX8" geneId="TcasGA2_TC009600"/>
        <gene id="20" protId="D6WBG8" geneId="TcasGA2_TC016163"/>
        <gene id="22" protId="D6WZU5" geneId="TcasGA2_TC011771"/>
        <gene id="24" protId="D2A4W5" geneId="GLEAN_15434"/>
        <gene id="26" protId="D6WK19" geneId="TcasGA2_TC014075"/>
        <gene id="28" protId="D6WDY7" geneId="TcasGA2_TC010518"/>
        <gene id="30" protId="D6W7S2" geneId="TcasGA2_TC010772"/>
        <gene id="32" protId="D6WRR0" geneId="TcasGA2_TC008784"/>
        <gene id="34" protId="D6WTD3" geneId="TER94"/>
        <gene id="36" protId="D6WW10" geneId="TcasGA2_TC005832"/>
        <gene id="38" protId="D1ZZM0" geneId="GLEAN_07435"/>
        <gene id="40" protId="D2A2I1" geneId="GLEAN_07859"/>
        <gene id="41" protId="D2A2I2" geneId="GLEAN_07860"/>
        <gene id="43" protId="D7EJ87" geneId="TcasGA2_TC006857"/>
        <gene id="45" protId="D7EKM0" geneId="TcasGA2_TC016033"/>
        <gene id="47" protId="D6W6F2" geneId="TcasGA2_TC011512"/>
        <gene id="49" protId="D6WWL1" geneId="TcasGA2_TC005725"/>
        <gene id="51" protId="D6WUB5" geneId="TcasGA2_TC010593"/>
        <gene id="53" protId="D6WF48" geneId="Top2"/>
        <gene id="55" protId="D6WBZ3" geneId="DNApol-delta"/>
        <gene id="57" protId="D6X1Z1" geneId="TcasGA2_TC012382"/>
        <gene id="60" protId="D7EIW5" geneId="TcasGA2_TC002089"/>
        <gene id="62" protId="D6WZK3" geneId="TcasGA2_TC011820"/>
        <gene id="64" protId="D2A5Z9" geneId="GLEAN_15082"/>
        <gene id="66" protId="D2A294" geneId="GLEAN_07810"/>
        <gene id="68" protId="D6WE64" geneId="TcasGA2_TC010496"/>
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        <gene id="72" protId="D6WPN1" geneId="TcasGA2_TC009783"/>
        <gene id="74" protId="D6X1R6" geneId="TcasGA2_TC012131"/>
        <gene id="76" protId="D6WJA8" geneId="TcasGA2_TC013061"/>
        <gene id="78" protId="D6X0Q6" geneId="TcasGA2_TC012162"/>
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        <gene id="85" protId="D6WA22" geneId="TcasGA2_TC000481"/>
        <gene id="87" protId="D6WMW9" geneId="TcasGA2_TC014606"/>
        <gene id="89" protId="D6WH78" geneId="TcasGA2_TC003896"/>
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        <gene id="94" protId="D6WI90" geneId="TcasGA2_TC002825"/>
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        <gene id="98" protId="D6WVS3" geneId="TcasGA2_TC006271"/>
        <gene id="100" protId="D6WNN4" geneId="TcasGA2_TC013867"/>
        <gene id="102" protId="D6WJV0" geneId="TcasGA2_TC014807"/>
        <gene id="104" protId="D6WJK6" geneId="TcasGA2_TC030624"/>
        <gene id="105" protId="D6WZ76" geneId="TcasGA2_TC012622"/>
        <gene id="107" protId="D7ELK9" geneId="TcasGA2_TC004103"/>
        <gene id="109" protId="D6W687" geneId="TcasGA2_TC004675"/>
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        <gene id="113" protId="D6WTN3" geneId="TcasGA2_TC008604"/>
        <gene id="115" protId="D6W6C6" geneId="TcasGA2_TC011526"/>
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        <gene id="119" protId="D6WXT7" geneId="TcasGA2_TC005513"/>
        <gene id="121" protId="D6X265" geneId="dom"/>
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        <gene id="125" protId="D6WEU3" geneId="TcasGA2_TC003167"/>
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        <gene id="140" protId="D2A0P2" geneId="GLEAN_08246"/>
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        <gene id="146" protId="D6W7J9" geneId="TcasGA2_TC010805"/>
        <gene id="148" protId="D6WXI0" geneId="TcasGA2_TC006548"/>
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        <gene id="152" protId="D6WKQ3" geneId="TcasGA2_TC010452"/>
        <gene id="153" protId="D7EJP0" geneId="TcasGA2_TC001880"/>
        <gene id="155" protId="D6WUJ3" geneId="TcasGA2_TC006019"/>
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        <gene id="159" protId="D6W954" geneId="TcasGA2_TC000641"/>
        <gene id="161" protId="D6WSI9" geneId="TcasGA2_TC008728"/>
        <gene id="163" protId="D6WJJ3" geneId="TcasGA2_TC030724"/>
        <gene id="165" protId="D1ZZJ4" geneId="GLEAN_07444"/>
        <gene id="167" protId="D6WVZ3" geneId="TcasGA2_TC006301"/>
        <gene id="169" protId="D2A654" geneId="GLEAN_15651"/>
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        <gene id="173" protId="D2A4R3" geneId="GLEAN_15322"/>
        <gene id="175" protId="D6WVN8" geneId="nuoG"/>
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        <gene id="179" protId="D6WWC3" geneId="TcasGA2_TC005772"/>
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        <gene id="183" protId="D6WCU5" geneId="TcasGA2_TC004938"/>
        <gene id="185" protId="D6WGP5" geneId="TcasGA2_TC010322"/>
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        <gene id="189" protId="D6WBL0" geneId="TcasGA2_TC004522"/>
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        <gene id="192" protId="D6WHV7" geneId="TcasGA2_TC002860"/>
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        <gene id="202" protId="D6X2Y9" geneId="TcasGA2_TC011969"/>
        <gene id="204" protId="D6WB87" geneId="TcasGA2_TC000308"/>
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        <gene id="208" protId="D6W6Q2" geneId="TcasGA2_TC004152"/>
        <gene id="210" protId="D6WCW8" geneId="TcasGA2_TC004437"/>
        <gene id="212" protId="D6WA55" geneId="TcasGA2_TC001103"/>
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        <gene id="216" protId="D6W9B9" geneId="TcasGA2_TC000969"/>
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        <gene id="224" protId="D6WK76" geneId="TcasGA2_TC014092"/>
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        <gene id="230" protId="D2A4L3" geneId="GLEAN_15346"/>
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        <gene id="233" protId="D6WK74" geneId="TcasGA2_TC014090"/>
        <gene id="234" protId="D2A482" geneId="GLEAN_14880"/>
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        <gene id="240" protId="D7EIB8" geneId="TcasGA2_TC008570"/>
        <gene id="241" protId="D6WK75" geneId="TcasGA2_TC014091"/>
        <gene id="242" protId="D6WLN0" geneId="TcasGA2_TC014379"/>
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        <gene id="248" protId="D2A2F6" geneId="GLEAN_07848"/>
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        <gene id="251" protId="D6WLE1" geneId="TcasGA2_TC013457"/>
        <gene id="253" protId="D6WBZ5" geneId="TcasGA2_TC005004"/>
        <gene id="255" protId="D6WIS4" geneId="glu"/>
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        <gene id="261" protId="D6WKB4" geneId="nuoF"/>
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        <gene id="275" protId="D6WRF8" geneId="TcasGA2_TC009342"/>
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        <gene id="329" protId="D2A579" geneId="nuoD"/>
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        <gene id="341" protId="D6WB64" geneId="TcasGA2_TC004569"/>
        <gene id="343" protId="D2A5D2" geneId="rept"/>
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        <gene id="347" protId="D6WG88" geneId="TcasGA2_TC002540"/>
        <gene id="349" protId="D2CG00" geneId="GLEAN_05088"/>
        <gene id="350" protId="D6WXX5" geneId="TcasGA2_TC002184"/>
        <gene id="352" protId="D6WU61" geneId="TcasGA2_TC009707"/>
        <gene id="354" protId="D6WR57" geneId="TcasGA2_TC008833"/>
        <gene id="356" protId="D6WK37" geneId="DNApol-alpha180"/>
        <gene id="358" protId="D6WS20" geneId="TcasGA2_TC030755"/>
        <gene id="360" protId="D6WIP4" geneId="TcasGA2_TC002784"/>
        <gene id="362" protId="D7EIL5" geneId="TcasGA2_TC001467"/>
        <gene id="364" protId="D2CFW9" geneId="GLEAN_10569"/>
        <gene id="366" protId="D6X0K4" geneId="TcasGA2_TC012279"/>
        <gene id="368" protId="D6WUR2" geneId="TcasGA2_TC005373"/>
        <gene id="370" protId="D2A3L0" geneId="GLEAN_07999"/>
        <gene id="372" protId="D6WE66" geneId="TcasGA2_TC010557"/>
        <gene id="374" protId="D6WMM4" geneId="TcasGA2_TC013214"/>
        <gene id="375" protId="D6WMM6" geneId="TcasGA2_TC014588"/>
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        <gene id="4610" protId="D2A635" geneId="GLEAN_15064"/>
        <gene id="4612" protId="D6WPF3" geneId="TcasGA2_TC009084"/>
        <gene id="4614" protId="D6WL53" geneId="TcasGA2_TC013506"/>
        <gene id="4616" protId="D6WVD0" geneId="TcasGA2_TC006199"/>
        <gene id="4618" protId="D2A5G9" geneId="GLEAN_15175"/>
        <gene id="4620" protId="D6WAR0" geneId="Ndufa13"/>
        <gene id="4622" protId="D6WFS0" geneId="TcasGA2_TC001558"/>
        <gene id="4624" protId="D6WSR1" geneId="TcasGA2_TC010137"/>
        <gene id="4626" protId="D6WI62" geneId="TcasGA2_TC002842"/>
        <gene id="4628" protId="D6WXC3" geneId="TcasGA2_TC006519"/>
        <gene id="4630" protId="D6WIS2" geneId="TcasGA2_TC000097"/>
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        <gene id="4632" protId="D6W995" geneId="TcasGA2_TC000625"/>
        <gene id="4633" protId="D6W8H0" geneId="TcasGA2_TC000756"/>
        <gene id="4634" protId="D6X4B6" geneId="TcasGA2_TC011379"/>
        <gene id="4635" protId="D6WHI0" geneId="TcasGA2_TC003544"/>
        <gene id="4636" protId="D6W946" geneId="chp"/>
        <gene id="4637" protId="D6WM91" geneId="TcasGA2_TC014491"/>
        <gene id="4638" protId="D2A0W0" geneId="GLEAN_08280"/>
        <gene id="4640" protId="D2A4Q3" geneId="GLEAN_15326"/>
        <gene id="4641" protId="D2A4Q5" geneId="GLEAN_15325"/>
        <gene id="4642" protId="D2A4Q4" geneId="GLEAN_15404"/>
        <gene id="4644" protId="D6WAK6" geneId="TcasGA2_TC000380"/>
        <gene id="4646" protId="D6WKQ4" geneId="TcasGA2_TC030556"/>
        <gene id="4648" protId="D6WXE2" geneId="TcasGA2_TC006526"/>
        <gene id="4650" protId="D7EI01" geneId="TcasGA2_TC010483"/>
        <gene id="4652" protId="D2A370" geneId="GLEAN_07934"/>
        <gene id="4654" protId="D6WV69" geneId="TcasGA2_TC005329"/>
        <gene id="4655" protId="D6W6A6" geneId="TcasGA2_TC004699"/>
        <gene id="4657" protId="D2A526" geneId="GLEAN_15461"/>
        <gene id="4659" protId="D6WEE0" geneId="TcasGA2_TC003204"/>
        <gene id="4661" protId="D6WN83" geneId="TcasGA2_TC010896"/>
        <gene id="4663" protId="D6WPG1" geneId="TcasGA2_TC009080"/>
        <gene id="4665" protId="D6WLZ4" geneId="TcasGA2_TC013365"/>
        <gene id="4667" protId="D6WSW4" geneId="TcasGA2_TC030592"/>
        <gene id="4669" protId="D6WIX9" geneId="TcasGA2_TC013835"/>
        <gene id="4671" protId="D6X4R1" geneId="TcasGA2_TC016225"/>
        <gene id="4673" protId="D6W8H4" geneId="TcasGA2_TC030599"/>
        <gene id="4675" protId="D6WDA4" geneId="TcasGA2_TC000117"/>
        <gene id="4677" protId="D6WQH0" geneId="TcasGA2_TC009931"/>
        <gene id="4679" protId="D6WVV7" geneId="TcasGA2_TC006286"/>
        <gene id="4681" protId="D2A1X7" geneId="GLEAN_07790"/>
        <gene id="4683" protId="D2A293" geneId="GLEAN_07683"/>
        <gene id="4685" protId="D6WNM3" geneId="TcasGA2_TC013873"/>
        <gene id="4687" protId="D6X3J2" geneId="TcasGA2_TC011224"/>
        <gene id="4688" protId="D6WUZ1" geneId="TcasGA2_TC005986"/>
        <gene id="4689" protId="D6WAI9" geneId="TcasGA2_TC001166"/>
        <gene id="4690" protId="D6WUZ2" geneId="TcasGA2_TC005985"/>
        <gene id="4692" protId="D2A1I7" geneId="GLEAN_07093"/>
        <gene id="4694" protId="D6WDX7" geneId="TcasGA2_TC010523"/>
        <gene id="4697" protId="D6WTA5" geneId="TcasGA2_TC009618"/>
        <gene id="4699" protId="D6W6E1" geneId="TcasGA2_TC011518"/>
        <gene id="4703" protId="D6WYS2" geneId="TcasGA2_TC006048"/>
        <gene id="4705" protId="D2A5J4" geneId="GLEAN_15162"/>
        <gene id="4707" protId="D7EIT5" geneId="TcasGA2_TC002073"/>
        <gene id="4709" protId="D6X329" geneId="TcasGA2_TC012531"/>
        <gene id="4710" protId="D6X328" geneId="TcasGA2_TC012530"/>
        <gene id="4711" protId="D6X327" geneId="TcasGA2_TC012529"/>
        <gene id="4713" protId="D6W6L6" geneId="TcasGA2_TC001634"/>
        <gene id="4714" protId="D6X3H3" geneId="TcasGA2_TC011250"/>
        <gene id="4716" protId="D6WQ75" geneId="TcasGA2_TC009884"/>
        <gene id="4718" protId="D6X3H9" geneId="TcasGA2_TC011256"/>
        <gene id="4721" protId="D6WSZ8" geneId="TcasGA2_TC009198"/>
        <gene id="4722" protId="D6WPV5" geneId="TcasGA2_TC009014"/>
        <gene id="4724" protId="D6WW61" geneId="TcasGA2_TC005810"/>
        <gene id="4725" protId="D7EHU8" geneId="TcasGA2_TC002314"/>
        <gene id="4727" protId="D6WJH8" geneId="TcasGA2_TC013774"/>
        <gene id="4729" protId="D6WSW3" geneId="TcasGA2_TC030692"/>
        <gene id="4731" protId="D6X186" geneId="TcasGA2_TC030563"/>
        <gene id="4733" protId="D2A2F4" geneId="GLEAN_07660"/>
        <gene id="4735" protId="D6WK56" geneId="TcasGA2_TC014816"/>
        <gene id="4737" protId="D6WR88" geneId="TcasGA2_TC030622"/>
        <gene id="4739" protId="D6WSW7" geneId="TcasGA2_TC009596"/>
        <gene id="4741" protId="D2A6J1" geneId="GLEAN_14975"/>
        <gene id="4742" protId="D2A3L2" geneId="GLEAN_15705"/>
        <gene id="4743" protId="D2A5Y2" geneId="GLEAN_15616"/>
        <gene id="4744" protId="D2A5Y1" geneId="GLEAN_15615"/>
        <gene id="4745" protId="D2A331" geneId="GLEAN_08522"/>
        <gene id="4746" protId="D6WVI0" geneId="TcasGA2_TC005929"/>
        <gene id="4747" protId="D2A5R3" geneId="GLEAN_15583"/>
        <gene id="4748" protId="D6X3G0" geneId="TcasGA2_TC011244"/>
        <gene id="4749" protId="D2A505" geneId="GLEAN_15448"/>
        <gene id="4750" protId="D2A4M3" geneId="GLEAN_15392"/>
        <gene id="4751" protId="D6W9C3" geneId="TcasGA2_TC000611"/>
        <gene id="4752" protId="D2A6I7" geneId="GLEAN_15703"/>
        <gene id="4753" protId="D2A506" geneId="GLEAN_15449"/>
        <gene id="4754" protId="D2A6I6" geneId="GLEAN_15702"/>
        <gene id="4755" protId="D6WEZ3" geneId="TcasGA2_TC003315"/>
        <gene id="4756" protId="D2A6J0" geneId="GLEAN_14976"/>
        <gene id="4757" protId="D7EIP5" geneId="TcasGA2_TC005119"/>
        <gene id="4758" protId="D2A6A3" geneId="GLEAN_15669"/>
        <gene id="4759" protId="D6WZX0" geneId="TcasGA2_TC011756"/>
        <gene id="4760" protId="D2A504" geneId="GLEAN_15447"/>
        <gene id="4761" protId="D2A3Z2" geneId="GLEAN_14917"/>
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    </database>
    <notes>
      <additionalInformation abbreviation="T.castaneum" link="http://www.uniprot.org/taxonomy/7070"/>
    </notes>
  </species>
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    <scoreDef id="inparalog" desc="Inparalog similarity relative to seed ortholog similarity"/>
    <scoreDef id="bootstrap" desc="Reliability of seed orthologs"/>
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      </geneRef>
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        <score id="bootstrap" value="1"/>
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