<?xml version="1.0" encoding="utf-8"?>
<orthoXML xmlns="http://orthoXML.org/2011/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="0.3" origin="InParanoid" originVersion="8.0" xsi:schemaLocation="http://orthoXML.org/2011/ http://www.orthoxml.org/0.3/orthoxml.xsd">
  <notes>
    <stats ortholog_groups="330" inparalogs="979"/>
    <parameters scoreCutoff="40" confidenceCutoff="0.05" overlapCutoff="0.5" mergingCutoff="0.5" matrix="BLOSUM62"/>
  </notes>
  <species name="Korarchaeum cryptofilum " NCBITaxId="374847">
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        <gene id="849" protId="B1L4B0" geneId="Kcr_0536"/>
        <gene id="855" protId="B1L3V8" geneId="Kcr_0381"/>
        <gene id="857" protId="B1L7A5" geneId="eIF5A"/>
        <gene id="861" protId="B1L6J0" geneId="Kcr_1323"/>
        <gene id="863" protId="B1L703" geneId="Kcr_1486"/>
        <gene id="865" protId="B1L662" geneId="proS"/>
        <gene id="867" protId="B1L719" geneId="Kcr_1502"/>
        <gene id="871" protId="B1L689" geneId="Kcr_1222"/>
        <gene id="874" protId="B1L4Z4" geneId="Kcr_0776"/>
        <gene id="875" protId="B1L4A3" geneId="Kcr_0529"/>
        <gene id="877" protId="B1L6N8" geneId="Kcr_1371"/>
        <gene id="879" protId="B1L7E3" geneId="Kcr_0010"/>
        <gene id="881" protId="B1L372" geneId="Kcr_0141"/>
        <gene id="883" protId="B1L3U4" geneId="Kcr_0367"/>
        <gene id="885" protId="B1L6W9" geneId="Kcr_1452"/>
        <gene id="887" protId="B1L7K7" geneId="Kcr_0074"/>
        <gene id="889" protId="B1L5N5" geneId="rps28e"/>
        <gene id="891" protId="B1L4N7" geneId="Kcr_0664"/>
        <gene id="892" protId="B1L4H3" geneId="Kcr_0599"/>
        <gene id="900" protId="B1L751" geneId="rps27e"/>
        <gene id="902" protId="B1L687" geneId="Kcr_1220"/>
        <gene id="907" protId="B1L6N5" geneId="rpl37ae"/>
        <gene id="909" protId="B1L4W4" geneId="Kcr_0745"/>
        <gene id="911" protId="B1L787" geneId="rpl30p"/>
        <gene id="914" protId="B1L3Q2" geneId="Kcr_0323"/>
        <gene id="915" protId="B1L383" geneId="Kcr_0152"/>
        <gene id="917" protId="B1L5R0" geneId="Kcr_1043"/>
        <gene id="919" protId="B1L6J3" geneId="Kcr_1326"/>
        <gene id="921" protId="B1L5N2" geneId="Kcr_1015"/>
        <gene id="923" protId="B1L736" geneId="rps12"/>
        <gene id="925" protId="B1L6Y6" geneId="Kcr_1469"/>
        <gene id="927" protId="B1L5Q7" geneId="Kcr_1040"/>
        <gene id="929" protId="B1L5E3" geneId="Kcr_0926"/>
        <gene id="931" protId="B1L6P7" geneId="rps3ae"/>
        <gene id="933" protId="B1L6E7" geneId="Kcr_1280"/>
        <gene id="954" protId="B1L6T0" geneId="Kcr_1413"/>
        <gene id="955" protId="B1L734" geneId="Kcr_1517"/>
        <gene id="958" protId="B1L7M4" geneId="Kcr_0091"/>
        <gene id="960" protId="B1L7D1" geneId="Kcr_1615"/>
        <gene id="962" protId="B1L618" geneId="Kcr_1151"/>
        <gene id="964" protId="B1L512" geneId="Kcr_0794"/>
        <gene id="966" protId="B1L6K4" geneId="Kcr_1337"/>
        <gene id="969" protId="B1L4B3" geneId="Kcr_0539"/>
        <gene id="970" protId="B1L4M7" geneId="Kcr_0653"/>
        <gene id="972" protId="B1L4P5" geneId="Kcr_0672"/>
        <gene id="974" protId="B1L3X2" geneId="Kcr_0395"/>
        <gene id="976" protId="B1L7I8" geneId="Kcr_0055"/>
        <gene id="978" protId="B1L7Q7" geneId="rpoL"/>
      </genes>
    </database>
    <notes>
      <additionalInformation abbreviation="K.cryptofilum" link="http://www.uniprot.org/taxonomy/374847"/>
    </notes>
  </species>
  <species name="Takifugu rubripes " NCBITaxId="31033">
    <database name="UniProt" version="UniProt_Complete_Proteomes_2013_06" protLink="http://www.uniprot.org/uniprot/">
      <genes>
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        <gene id="4" protId="H2TAU8" geneId="POLR3B"/>
        <gene id="7" protId="H2TD79" geneId="SPATA5"/>
        <gene id="9" protId="H2V6N6" geneId="ABCE1"/>
        <gene id="11" protId="H2SY47" geneId="IARS"/>
        <gene id="13" protId="H2V9Q6" geneId="EEF2"/>
        <gene id="14" protId="H2UYE7" geneId="EFTUD2"/>
        <gene id="16" protId="H2TJF4" geneId="C22orf28"/>
        <gene id="18" protId="H2RQI3" geneId="ATP6V1A (1 of 2)"/>
        <gene id="20" protId="H2U6U7" geneId="EEF1A2"/>
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        <gene id="22" protId="H2SNC1" geneId="Tru.3939"/>
        <gene id="23" protId="H2SIC4" geneId="uncharacterized_H2SIC4"/>
        <gene id="24" protId="H2TDB3" geneId="uncharacterized_H2TDB3"/>
        <gene id="26" protId="H2TJ57" geneId="CTPS (1 of 2)"/>
        <gene id="28" protId="H2RZC5" geneId="TARS"/>
        <gene id="29" protId="H2S6G0" geneId="TARSL2"/>
        <gene id="30" protId="H2UN28" geneId="TARS2"/>
        <gene id="32" protId="H2SKD0" geneId="LARS"/>
        <gene id="34" protId="H2VEU6" geneId="ATP6V1B2"/>
        <gene id="36" protId="H2V735" geneId="SDHA"/>
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        <gene id="45" protId="H2TNQ1" geneId="RUVBL1"/>
        <gene id="47" protId="H2TDQ9" geneId="ENO1"/>
        <gene id="48" protId="H2UN91" geneId="uncharacterized_H2UN91"/>
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        <gene id="54" protId="H2T086" geneId="MCM2"/>
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        <gene id="85" protId="H2TCB5" geneId="SEC61A1 (1 of 2)"/>
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        <gene id="91" protId="H2VEZ4" geneId="ASS"/>
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        <gene id="108" protId="H2SQ52" geneId="uncharacterized_H2SQ52"/>
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        <gene id="112" protId="H2V5I4" geneId="GAPDHS"/>
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        <gene id="143" protId="H2RK26" geneId="GFPT2"/>
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        <gene id="185" protId="H2UJH4" geneId="STOML3 (2 of 2)"/>
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        <gene id="204" protId="H2S842" geneId="ATP7A"/>
        <gene id="206" protId="P70076" geneId="hars"/>
        <gene id="210" protId="H2SNQ5" geneId="uncharacterized_H2SNQ5"/>
        <gene id="211" protId="H2TR67" geneId="ABCB11"/>
        <gene id="212" protId="H2VA03" geneId="uncharacterized_H2VA03"/>
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        <gene id="239" protId="H2VCB6" geneId="uncharacterized_H2VCB6"/>
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        <gene id="262" protId="H2SQK9" geneId="TP53I3"/>
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        <gene id="268" protId="H2S7S1" geneId="PM20D2 (1 of 2)"/>
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        <gene id="291" protId="H2UK05" geneId="uncharacterized_H2UK05"/>
        <gene id="292" protId="H2T011" geneId="uncharacterized_H2T011"/>
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        <gene id="365" protId="H2SAY9" geneId="uncharacterized_H2SAY9"/>
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        <gene id="367" protId="H2VF25" geneId="uncharacterized_H2VF25"/>
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        <gene id="374" protId="H2RPT7" geneId="AARS"/>
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        <gene id="380" protId="H2TA57" geneId="PRDX6 (1 of 2)"/>
        <gene id="383" protId="H2TDB8" geneId="uncharacterized_H2TDB8"/>
        <gene id="384" protId="H2VC78" geneId="uncharacterized_H2VC78"/>
        <gene id="385" protId="H2RWM3" geneId="uncharacterized_H2RWM3"/>
        <gene id="387" protId="H2SG43" geneId="STT3A"/>
        <gene id="388" protId="H2U8Z1" geneId="STT3B (1 of 2)"/>
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        <gene id="392" protId="H2SMR8" geneId="PGK1"/>
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    <notes>
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